BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022131
         (302 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225431703|ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial [Vitis vinifera]
 gi|296088528|emb|CBI37519.3| unnamed protein product [Vitis vinifera]
          Length = 525

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 238/302 (78%), Positives = 280/302 (92%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT LIYGWCKINR+ +AER LGEM+ERG+E NVVTYNVLLNG+CRRASLHP +RFE+TI
Sbjct: 224 MYTILIYGWCKINRVSIAERLLGEMVERGIEANVVTYNVLLNGICRRASLHPDDRFERTI 283

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R+AEKV DEMR +GIEPDVTS+SIV+HVYSRAH+P+L+LDKL  MK+KGI PTVATY+SV
Sbjct: 284 RDAEKVLDEMRQKGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSV 343

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           VKCLCSCGR+EDAEEL+ +MV++GV PSA TYNCFFKEYRGRKD++ A++LYR+MKE+  
Sbjct: 344 VKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKMKEEYS 403

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C+P+MH+YNIL+GMF+ LNRM++V+EIW+D+K SG GPDLDSYT+LIHGLCEKQKWKEAC
Sbjct: 404 CLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEAC 463

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
            +FVEMIEKG LPQK+TFETLYRGLIQSDML+TWRRLKKKL+EESITFGSEFQ YHFKPY
Sbjct: 464 HFFVEMIEKGYLPQKITFETLYRGLIQSDMLKTWRRLKKKLEEESITFGSEFQQYHFKPY 523

Query: 301 RR 302
           RR
Sbjct: 524 RR 525



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 138/295 (46%), Gaps = 29/295 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I    K+ + D+A +F+ EM +  +EP   T+ +L+     R S+          R
Sbjct: 120 YNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRILI-----RRSVSAG-----LTR 169

Query: 62  NAEKVFDEMRVRGIEPDVTS--FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
            A + FD+M    +E D  S  F  +L   S+    +L+    N  K K        Y+ 
Sbjct: 170 QAVRAFDDMSC-FVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQRKFK-FEANAKMYTI 227

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK----------EYRGRKDANGAM 169
           ++   C   R+  AE LLGEMV  G+  +  TYN              + R  +    A 
Sbjct: 228 LIYGWCKINRVSIAERLLGEMVERGIEANVVTYNVLLNGICRRASLHPDDRFERTIRDAE 287

Query: 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
           K+  +M++ G+  P++ SY+I+I ++   ++ ++  +    +K  G+ P + +YT ++  
Sbjct: 288 KVLDEMRQKGI-EPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSVVKC 346

Query: 230 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETL---YRGLIQSD-MLRTWRRLKKK 280
           LC   + ++A +   +M++ G+ P   T+      YRG   SD  LR +R++K++
Sbjct: 347 LCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKMKEE 401



 Score = 38.5 bits (88), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 37/205 (18%), Positives = 85/205 (41%), Gaps = 33/205 (16%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           DV S+++++ + ++  Q  ++   +  M +  + PT  T+  +++   S G    A    
Sbjct: 116 DVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRILIRRSVSAGLTRQAVRAF 175

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKD---------ANGAMKLYRQM--KEDGLCVPNMH 186
            +M            +CF ++     D           G +KL  Q+  +       N  
Sbjct: 176 DDM------------SCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQRKFKFEANAK 223

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW---------- 236
            Y ILI  +  +NR+ +   +  ++   G+  ++ +Y +L++G+C +             
Sbjct: 224 MYTILIYGWCKINRVSIAERLLGEMVERGIEANVVTYNVLLNGICRRASLHPDDRFERTI 283

Query: 237 KEACQYFVEMIEKGLLPQKVTFETL 261
           ++A +   EM +KG+ P   ++  +
Sbjct: 284 RDAEKVLDEMRQKGIEPDVTSYSIV 308


>gi|147767583|emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
          Length = 525

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 236/302 (78%), Positives = 277/302 (91%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT LIYGWCKINR+ +AER LGEM+ERG+  NVVTYNVLLNG+CR ASLHP +RFE+TI
Sbjct: 224 MYTILIYGWCKINRVSIAERLLGEMVERGJXANVVTYNVLLNGICRXASLHPDDRFERTI 283

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R+AEKV DEMR  GIEPDVTS+SIV+HVYSRAH+P+L+LDKL  MK+KGI PTVATY+SV
Sbjct: 284 RDAEKVLDEMRQXGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSV 343

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           VKCLCSCGR+EDAEEL+ +MV++GV PSA TYNCFFKEYRGRKD++ A++LYR+MKE+  
Sbjct: 344 VKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKMKEEYS 403

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C+P+MH+YNIL+GMF+ LNRM++V+EIW+D+K SG GPDLDSYT+LIHGLCEKQKWKEAC
Sbjct: 404 CLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEAC 463

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
            +FVEMIEKG LPQK+TFETLYRGLIQSDML+TWRRLKKKL+EESITFGSEFQ YHFKPY
Sbjct: 464 HFFVEMIEKGYLPQKITFETLYRGLIQSDMLKTWRRLKKKLEEESITFGSEFQXYHFKPY 523

Query: 301 RR 302
           RR
Sbjct: 524 RR 525



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 138/295 (46%), Gaps = 29/295 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I    K+ + D+A +F+ EM +  +EP   T+ +L+     R S+          R
Sbjct: 120 YNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRILI-----RRSVSAG-----LTR 169

Query: 62  NAEKVFDEMRVRGIEPDVTS--FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
            A + FD+M    +E D  S  F  +L   S+    +L+    N  K K        Y+ 
Sbjct: 170 QAVRAFDDMSC-FVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQRKFK-FEANAKMYTI 227

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK----------EYRGRKDANGAM 169
           ++   C   R+  AE LLGEMV  G+  +  TYN              + R  +    A 
Sbjct: 228 LIYGWCKINRVSIAERLLGEMVERGJXANVVTYNVLLNGICRXASLHPDDRFERTIRDAE 287

Query: 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
           K+  +M++ G+  P++ SY+I+I ++   ++ ++  +    +K  G+ P + +YT ++  
Sbjct: 288 KVLDEMRQXGI-EPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSVVKC 346

Query: 230 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETL---YRGLIQSD-MLRTWRRLKKK 280
           LC   + ++A +   +M++ G+ P   T+      YRG   SD  LR +R++K++
Sbjct: 347 LCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKMKEE 401


>gi|224081016|ref|XP_002306265.1| predicted protein [Populus trichocarpa]
 gi|222855714|gb|EEE93261.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 245/302 (81%), Positives = 269/302 (89%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT LIYGWCKI RIDMAERFL E  ERG+E  VVTYNVLLNG+CRRASLHP  RFE+TI
Sbjct: 247 MYTVLIYGWCKIGRIDMAERFLKETGERGIEATVVTYNVLLNGICRRASLHPESRFERTI 306

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE +FDEMR RGIEPDVTSFSIVLHVYSRAH+P+L+LDKL  MKEKGICP+V TY+SV
Sbjct: 307 TLAENLFDEMRERGIEPDVTSFSIVLHVYSRAHKPELTLDKLKLMKEKGICPSVVTYTSV 366

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           VKCLCSCGRIEDAEELLGEMVRNGV  +A TYNCFFKEY GRKDA  A+KLY++M+EDGL
Sbjct: 367 VKCLCSCGRIEDAEELLGEMVRNGVSRTAVTYNCFFKEYMGRKDAESALKLYKKMREDGL 426

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
               +HSYNIL+ MFM LNR+D+V EIW D+K SGLGPDLDSYTMLIHGLCEK+KW+EAC
Sbjct: 427 GSLGLHSYNILLRMFMMLNRLDIVNEIWEDLKSSGLGPDLDSYTMLIHGLCEKEKWREAC 486

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
           ++FVEMIEKGLLPQKVTFETLY+GLIQSDMLRTWRRLKKKLDEESITFGSEFQNY  KPY
Sbjct: 487 KFFVEMIEKGLLPQKVTFETLYKGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYQLKPY 546

Query: 301 RR 302
           RR
Sbjct: 547 RR 548



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/191 (19%), Positives = 83/191 (43%), Gaps = 15/191 (7%)

Query: 80  TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
            ++++++ + ++  Q  +    +  M ++ + PT  T+  +++ L + G    A     +
Sbjct: 141 VTYNLMIDILAKVRQFDVCWQLIVEMDQRNVKPTSETFFVLIRRLVAAGLTRQAIRAFDD 200

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM--KEDGLCVPNMHSYNILIGMFMA 197
           M      P  ET+ CF  +   +    G +K+  ++  K      PN+  Y +LI  +  
Sbjct: 201 MESFVSEPVNETHFCFLLDTLCKY---GYVKVGVEIFNKRKHRFSPNVKMYTVLIYGWCK 257

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY----------FVEMI 247
           + R+DM      +    G+   + +Y +L++G+C +       ++          F EM 
Sbjct: 258 IGRIDMAERFLKETGERGIEATVVTYNVLLNGICRRASLHPESRFERTITLAENLFDEMR 317

Query: 248 EKGLLPQKVTF 258
           E+G+ P   +F
Sbjct: 318 ERGIEPDVTSF 328



 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 3/168 (1%)

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            TY+ ++  L    + +   +L+ EM +  V P++ET+    +          A++ +  
Sbjct: 141 VTYNLMIDILAKVRQFDVCWQLIVEMDQRNVKPTSETFFVLIRRLVAAGLTRQAIRAFDD 200

Query: 175 MKEDGLCVP-NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           M E  +  P N   +  L+        + +  EI+N  K     P++  YT+LI+G C+ 
Sbjct: 201 M-ESFVSEPVNETHFCFLLDTLCKYGYVKVGVEIFNKRKHR-FSPNVKMYTVLIYGWCKI 258

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            +   A ++  E  E+G+    VT+  L  G+ +   L    R ++ +
Sbjct: 259 GRIDMAERFLKETGERGIEATVVTYNVLLNGICRRASLHPESRFERTI 306


>gi|357455845|ref|XP_003598203.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355487251|gb|AES68454.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 503

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 232/302 (76%), Positives = 264/302 (87%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT LIYGWCKI R   A  FL EM  +GVEPNVVTYNV+LNG+CR+ASLHP ERFE+TI
Sbjct: 202 MYTVLIYGWCKIGRFKTALSFLNEMKVKGVEPNVVTYNVILNGICRKASLHPEERFERTI 261

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R+AEKVFDEMR  GIEPDVTSFSIVLHVYSRAH+PQL LDKL  MKEKGICP V TY+SV
Sbjct: 262 RDAEKVFDEMRESGIEPDVTSFSIVLHVYSRAHKPQLVLDKLGLMKEKGICPNVVTYTSV 321

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +KCLCSCGRIE+AE+L+ EMVRNGV P A TYNCFFKEYRGRKDA+ A+K +++MKEDGL
Sbjct: 322 IKCLCSCGRIEEAEDLIDEMVRNGVSPCAATYNCFFKEYRGRKDADKALKFFKKMKEDGL 381

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P  H+Y +LI MF+  + + +V+EIWND+  SG+GPDLDSYT+LIHGLCE +KW+EAC
Sbjct: 382 CEPTTHTYGVLIAMFLKADMIGVVKEIWNDMMESGVGPDLDSYTVLIHGLCESKKWREAC 441

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
           QYFVEMIEKG LPQKVTFETLYRGLIQSDMLRTWRRLKK+LD+ESITFGSEFQNYH KPY
Sbjct: 442 QYFVEMIEKGFLPQKVTFETLYRGLIQSDMLRTWRRLKKRLDQESITFGSEFQNYHLKPY 501

Query: 301 RR 302
           +R
Sbjct: 502 KR 503



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 147/331 (44%), Gaps = 41/331 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLN-----GVCRRA--SLHPSE 54
           Y  LI    K+++ D+A + + EM +  + P   T+ +L+       + R+A  + +  E
Sbjct: 98  YNLLIDIVSKVHQFDLASQLIVEMDQINLPPTPTTFFILIKRLISANLTRQAVRAFNEIE 157

Query: 55  RFEKT-------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
            +  T                   +++A ++F+    R +  DV  ++++++ + +  + 
Sbjct: 158 SYTDTKLTSDHFTYLLDTLCKYGYVKHACELFNRNSNRFV-ADVKMYTVLIYGWCKIGRF 216

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR----------IEDAEELLGEMVRNGV 145
           + +L  LN MK KG+ P V TY+ ++  +C              I DAE++  EM  +G+
Sbjct: 217 KTALSFLNEMKVKGVEPNVVTYNVILNGICRKASLHPEERFERTIRDAEKVFDEMRESGI 276

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P   +++     Y         +     MKE G+C PN+ +Y  +I    +  R++   
Sbjct: 277 EPDVTSFSIVLHVYSRAHKPQLVLDKLGLMKEKGIC-PNVVTYTSVIKCLCSCGRIEEAE 335

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL-PQKVTFETLYRG 264
           ++ +++  +G+ P   +Y         ++   +A ++F +M E GL  P   T+  L   
Sbjct: 336 DLIDEMVRNGVSPCAATYNCFFKEYRGRKDADKALKFFKKMKEDGLCEPTTHTYGVLIAM 395

Query: 265 LIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
            +++DM+   + +   + E  +  G +  +Y
Sbjct: 396 FLKADMIGVVKEIWNDMMESGV--GPDLDSY 424



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 85/199 (42%), Gaps = 9/199 (4%)

Query: 93  HQPQLSLDKLNFMKEKGICP-TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
           H  +++L   NF K     P ++ +Y+ ++  +    + + A +L+ EM +  + P+  T
Sbjct: 73  HHSKIALSLHNFSKSLPNPPLSLQSYNLLIDIVSKVHQFDLASQLIVEMDQINLPPTPTT 132

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           +    K          A++ + +++           +  L+        +    E++N  
Sbjct: 133 FFILIKRLISANLTRQAVRAFNEIESYTDTKLTSDHFTYLLDTLCKYGYVKHACELFNR- 191

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
             +    D+  YT+LI+G C+  ++K A  +  EM  KG+ P  VT+  +  G+ +   L
Sbjct: 192 NSNRFVADVKMYTVLIYGWCKIGRFKTALSFLNEMKVKGVEPNVVTYNVILNGICRKASL 251

Query: 272 -------RTWRRLKKKLDE 283
                  RT R  +K  DE
Sbjct: 252 HPEERFERTIRDAEKVFDE 270


>gi|255542990|ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548519|gb|EEF50010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 511

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 229/302 (75%), Positives = 267/302 (88%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LIYGWCKI RIDMAERF+ EM E G+E NVVTYNVLL+G+CRRA L P  RFE+TI
Sbjct: 210 IYTVLIYGWCKIGRIDMAERFIREMDEMGIEANVVTYNVLLDGICRRAKLQPEGRFERTI 269

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+KVFDEMR +GIEPDVTSFSI+LHVYSRAH+PQL++DKL  M+E GICPTVATY+SV
Sbjct: 270 MKADKVFDEMRQKGIEPDVTSFSILLHVYSRAHKPQLTVDKLKLMEEMGICPTVATYTSV 329

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +KCLCSCGRI+DAEELL +MVRNGV P+A TYNCFFKEYRGRKD   A+KLYR+++++ L
Sbjct: 330 LKCLCSCGRIDDAEELLEQMVRNGVSPNAATYNCFFKEYRGRKDPETALKLYRKIRQENL 389

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P++H+YNIL+GMFM LNR ++V EIWND++ SG GPDLDSYT+L+HGLCEKQKW++AC
Sbjct: 390 CDPSVHTYNILLGMFMKLNRFNIVNEIWNDLRSSGSGPDLDSYTLLVHGLCEKQKWQKAC 449

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
           Q+FVEMIEKGLLPQK TFE LY GLIQS+MLRTWRRLKKKLDEESI FGSEF NYH KPY
Sbjct: 450 QFFVEMIEKGLLPQKATFEMLYAGLIQSNMLRTWRRLKKKLDEESIAFGSEFSNYHLKPY 509

Query: 301 RR 302
           RR
Sbjct: 510 RR 511



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 92/202 (45%), Gaps = 27/202 (13%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG-------RI 130
           + T++++++ + S+  Q  +S   +  M +  + P   T+  +++ L S G         
Sbjct: 102 NTTTYNLIIDILSKVRQFDVSWQLIIQMDQNNLQPNSHTFLILIRRLISAGFTRQAIRAF 161

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD-ANGAMKLYRQMKEDGLCVPNMHSYN 189
           +D E  + E V        +T+ CF  +   +      A++++ + K   L  PN+  Y 
Sbjct: 162 DDMESFIAETVN-------QTHFCFLLDTLCKYGYIKVAVEVFNKRKFRFL--PNVRIYT 212

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK----------EA 239
           +LI  +  + R+DM      ++   G+  ++ +Y +L+ G+C + K +          +A
Sbjct: 213 VLIYGWCKIGRIDMAERFIREMDEMGIEANVVTYNVLLDGICRRAKLQPEGRFERTIMKA 272

Query: 240 CQYFVEMIEKGLLPQKVTFETL 261
            + F EM +KG+ P   +F  L
Sbjct: 273 DKVFDEMRQKGIEPDVTSFSIL 294



 Score = 43.9 bits (102), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 48/239 (20%), Positives = 100/239 (41%), Gaps = 7/239 (2%)

Query: 49  SLHPS---ERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH--VYSRAHQPQLSLDKLN 103
           SL PS   E   + + N    F  M        +T  S +LH  +    H  +++L   +
Sbjct: 32  SLEPSNDAEIVSEILLNHHNPFHAMESSLQLHGITLSSSLLHQTLLRLRHNSKIALSFFH 91

Query: 104 F-MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR 162
           + +          TY+ ++  L    + + + +L+ +M +N + P++ T+    +     
Sbjct: 92  YSLSLPSSSVNTTTYNLIIDILSKVRQFDVSWQLIIQMDQNNLQPNSHTFLILIRRLISA 151

Query: 163 KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS 222
                A++ +  M+       N   +  L+        + +  E++N  K   L P++  
Sbjct: 152 GFTRQAIRAFDDMESFIAETVNQTHFCFLLDTLCKYGYIKVAVEVFNKRKFRFL-PNVRI 210

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           YT+LI+G C+  +   A ++  EM E G+    VT+  L  G+ +   L+   R ++ +
Sbjct: 211 YTVLIYGWCKIGRIDMAERFIREMDEMGIEANVVTYNVLLDGICRRAKLQPEGRFERTI 269


>gi|449457341|ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
 gi|449523938|ref|XP_004168980.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
          Length = 506

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 228/302 (75%), Positives = 268/302 (88%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LIYGWCKI R +MAERFL +M+ERG+EPNVVTYNVLLNGVCRRASLHP  RFEKTI
Sbjct: 205 IYTILIYGWCKIGRFEMAERFLKDMVERGIEPNVVTYNVLLNGVCRRASLHPEGRFEKTI 264

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R+AEKVFDEMR RGIEPDVTSFSIVLHVYSRAH+P+LSLDKL  MKE GI PTVATY+SV
Sbjct: 265 RHAEKVFDEMRKRGIEPDVTSFSIVLHVYSRAHKPELSLDKLKQMKELGISPTVATYTSV 324

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +KCLCSCGR+ED E L+ EMVR+G+ PS  TYNCFFKEYRGRKD  GA++LY++M+ED L
Sbjct: 325 IKCLCSCGRLEDGENLIEEMVRSGISPSPTTYNCFFKEYRGRKDGAGALRLYKKMREDCL 384

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P++H+YNIL+ +F+ L++ + ++E+WND+K SG+GPDLDSYT +IHGLCEKQ+W EAC
Sbjct: 385 CAPSLHTYNILLALFLNLDKKETLKELWNDMKESGVGPDLDSYTTIIHGLCEKQRWSEAC 444

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
           Q+FVEMIE+G LPQKVTFE LYRGLIQSDMLRTWRRLKKKL+EES T+GSE +NYH KPY
Sbjct: 445 QFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWRRLKKKLEEESKTYGSELKNYHIKPY 504

Query: 301 RR 302
            R
Sbjct: 505 MR 506



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 123/274 (44%), Gaps = 29/274 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+    K+ + D A   + +M  +G +  ++    L++                  R
Sbjct: 105 YNILLDILAKVRQFDAAWHLILQMDHKGTDTFLLLIRRLISS--------------GRTR 150

Query: 62  NAEKVFDEMR-VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK-GICPTVATYSS 119
            A + FD++  + G +  +  F  +L V  +    +++++  N  KE+ G+   V  Y+ 
Sbjct: 151 QAIRAFDDIEGLTGNKVGIDDFCYLLDVLCKYGYVKVAVEVFNKRKEEFGV--DVKIYTI 208

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK----------EYRGRKDANGAM 169
           ++   C  GR E AE  L +MV  G+ P+  TYN              E R  K    A 
Sbjct: 209 LIYGWCKIGRFEMAERFLKDMVERGIEPNVVTYNVLLNGVCRRASLHPEGRFEKTIRHAE 268

Query: 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
           K++ +M++ G+  P++ S++I++ ++   ++ ++  +    +K  G+ P + +YT +I  
Sbjct: 269 KVFDEMRKRGI-EPDVTSFSIVLHVYSRAHKPELSLDKLKQMKELGISPTVATYTSVIKC 327

Query: 230 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
           LC   + ++      EM+  G+ P   T+   ++
Sbjct: 328 LCSCGRLEDGENLIEEMVRSGISPSPTTYNCFFK 361



 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 36/198 (18%), Positives = 84/198 (42%), Gaps = 6/198 (3%)

Query: 92  AHQPQLSLDKLNFMKEKGICP-TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
            H  +++L   ++       P +  +Y+ ++  L    + + A  L+ +M   G     +
Sbjct: 79  THHSKIALSFFDYANSLPSNPISTTSYNILLDILAKVRQFDAAWHLILQMDHKG----TD 134

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           T+    +          A++ +  ++        +  +  L+ +      + +  E++N 
Sbjct: 135 TFLLLIRRLISSGRTRQAIRAFDDIEGLTGNKVGIDDFCYLLDVLCKYGYVKVAVEVFNK 194

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
            K    G D+  YT+LI+G C+  +++ A ++  +M+E+G+ P  VT+  L  G+ +   
Sbjct: 195 RKEE-FGVDVKIYTILIYGWCKIGRFEMAERFLKDMVERGIEPNVVTYNVLLNGVCRRAS 253

Query: 271 LRTWRRLKKKLDEESITF 288
           L    R +K +      F
Sbjct: 254 LHPEGRFEKTIRHAEKVF 271


>gi|356499253|ref|XP_003518456.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Glycine max]
          Length = 510

 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 223/302 (73%), Positives = 261/302 (86%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT LIYGWCKI RI  A+ FL EMI++G+EPNVVTYNVLLNGVCR+ SLHP ERFE+TI
Sbjct: 209 MYTVLIYGWCKIGRIKTAQSFLNEMIDKGIEPNVVTYNVLLNGVCRKVSLHPEERFERTI 268

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           RNAE+VFD+MR  GIEPDVTSFSI+LHVYSRAH+PQL LDKL+ MKEKGICP V  Y+SV
Sbjct: 269 RNAEEVFDQMRESGIEPDVTSFSILLHVYSRAHKPQLVLDKLSLMKEKGICPNVVMYTSV 328

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +KCL SCG +EDAE LLGEMVR+GV P A TYNCFFKE+RGRKD   A++++++MKEDGL
Sbjct: 329 IKCLASCGWLEDAERLLGEMVRDGVSPCAATYNCFFKEFRGRKDGESALRMFKRMKEDGL 388

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C+P+ H+Y ILI MF+ L+ + +V+EIW D+K +G GPDLD YT+LIHGLCE+Q+W+EAC
Sbjct: 389 CMPSSHTYVILIRMFLRLDMIKVVKEIWQDMKETGAGPDLDLYTVLIHGLCERQRWREAC 448

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
            YFVEMIE G LP K TFE+LYRGLIQ+DMLRTWRRLKKKLDEESITFGSEFQNY  KPY
Sbjct: 449 HYFVEMIENGFLPLKGTFESLYRGLIQADMLRTWRRLKKKLDEESITFGSEFQNYQLKPY 508

Query: 301 RR 302
           RR
Sbjct: 509 RR 510



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 137/300 (45%), Gaps = 40/300 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLN-----GVCRRA--SLHPS 53
           +T LI    K+ + D+A + + EM +R  + P   T+  L+      G+ R+A  + H  
Sbjct: 104 FTLLIDTMAKVRQFDVAWQLIVEMDQRHHLTPTPSTFLTLIRRLICAGLTRQAVRAFHDI 163

Query: 54  ERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPT 113
           + F +T    +                 F ++L    +    +L+++  N  K     PT
Sbjct: 164 DAFSETKTTPQ----------------DFCVLLDTLCKYGHVRLAVEVFNKNKHT-FPPT 206

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK----------EYRGRK 163
           V  Y+ ++   C  GRI+ A+  L EM+  G+ P+  TYN              E R  +
Sbjct: 207 VKMYTVLIYGWCKIGRIKTAQSFLNEMIDKGIEPNVVTYNVLLNGVCRKVSLHPEERFER 266

Query: 164 DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSY 223
               A +++ QM+E G+  P++ S++IL+ ++   ++  +V +  + +K  G+ P++  Y
Sbjct: 267 TIRNAEEVFDQMRESGI-EPDVTSFSILLHVYSRAHKPQLVLDKLSLMKEKGICPNVVMY 325

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL---YRGLIQSD-MLRTWRRLKK 279
           T +I  L      ++A +   EM+  G+ P   T+      +RG    +  LR ++R+K+
Sbjct: 326 TSVIKCLASCGWLEDAERLLGEMVRDGVSPCAATYNCFFKEFRGRKDGESALRMFKRMKE 385



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/168 (19%), Positives = 75/168 (44%), Gaps = 2/168 (1%)

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEM-VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           ++++ ++  +    + + A +L+ EM  R+ + P+  T+    +          A++ + 
Sbjct: 102 SSFTLLIDTMAKVRQFDVAWQLIVEMDQRHHLTPTPSTFLTLIRRLICAGLTRQAVRAFH 161

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
            +            + +L+        + +  E++N  K +   P +  YT+LI+G C+ 
Sbjct: 162 DIDAFSETKTTPQDFCVLLDTLCKYGHVRLAVEVFNKNKHT-FPPTVKMYTVLIYGWCKI 220

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            + K A  +  EMI+KG+ P  VT+  L  G+ +   L    R ++ +
Sbjct: 221 GRIKTAQSFLNEMIDKGIEPNVVTYNVLLNGVCRKVSLHPEERFERTI 268


>gi|122236160|sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g13420, mitochondrial; Flags: Precursor
 gi|110738270|dbj|BAF01064.1| hypothetical protein [Arabidopsis thaliana]
          Length = 509

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 222/302 (73%), Positives = 263/302 (87%), Gaps = 1/302 (0%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI GWCK+ RIDMAE+FL EMIE G+EPNVVTYNVLLNG+CR ASLHP ERFE+ +
Sbjct: 209 VYTILIAGWCKLRRIDMAEKFLVEMIESGIEPNVVTYNVLLNGICRTASLHPEERFERNV 268

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           RNAEKVFDEMR RGIEPDVTSFSIVLH+YSRAH+ +L+LDK+  MK KGI PT+ TY+SV
Sbjct: 269 RNAEKVFDEMRQRGIEPDVTSFSIVLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTSV 328

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           VKCLCSCGR+E+AEELL  MV +G+ PS+ TYNCFFKEY+GRKDANGAM LYR+MK +GL
Sbjct: 329 VKCLCSCGRLEEAEELLETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMK-NGL 387

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P+  +YN+L+G F+ L +M+ V+EIW+D+K S  GPDLDSYT L+HGLC K+KWKEAC
Sbjct: 388 CKPSTQTYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEAC 447

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
            YFVEMIE+G LPQK+TFETLY+GLIQS+ +RTWRRLKKKLDEESITFGSEFQ Y F+PY
Sbjct: 448 GYFVEMIERGFLPQKLTFETLYKGLIQSNKMRTWRRLKKKLDEESITFGSEFQRYPFEPY 507

Query: 301 RR 302
           +R
Sbjct: 508 KR 509



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 105/230 (45%), Gaps = 37/230 (16%)

Query: 34  VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93
           +V +  LL+ +C+              + A  VF+E R      D   ++I++  + +  
Sbjct: 173 LVEFGFLLDTLCKYGY----------TKMAVGVFNE-RKEEFGSDEKVYTILIAGWCKLR 221

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           +  ++   L  M E GI P V TY+ ++                     NG+C +A  + 
Sbjct: 222 RIDMAEKFLVEMIESGIEPNVVTYNVLL---------------------NGICRTASLH- 259

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
               E R  ++   A K++ +M++ G+  P++ S++I++ M+   ++ ++  +    +K 
Sbjct: 260 ---PEERFERNVRNAEKVFDEMRQRGI-EPDVTSFSIVLHMYSRAHKAELTLDKMKLMKA 315

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            G+ P +++YT ++  LC   + +EA +    M+E G+ P   T+   ++
Sbjct: 316 KGISPTIETYTSVVKCLCSCGRLEEAEELLETMVESGISPSSATYNCFFK 365



 Score = 44.7 bits (104), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 82/195 (42%), Gaps = 15/195 (7%)

Query: 93  HQPQLSLDKLNFMKEKGICPTVAT-YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
           H  +++L    +++      T  T ++ ++  L    + +   +L+ EM +     S ET
Sbjct: 83  HNSKIALSFFQYLRSLPSPSTTPTSFNLIIDILGRVRQFDVVRQLIVEMDQT----SPET 138

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN-----MHSYNILIGMFMALNRMDMVRE 206
           +    K    R  A G  +   +  +D  C        +  +  L+          M   
Sbjct: 139 FLILVK----RLIAAGLTRQAVRAFDDAPCFLENRRFRLVEFGFLLDTLCKYGYTKMAVG 194

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++N+ K    G D   YT+LI G C+ ++   A ++ VEMIE G+ P  VT+  L  G+ 
Sbjct: 195 VFNERKEE-FGSDEKVYTILIAGWCKLRRIDMAEKFLVEMIESGIEPNVVTYNVLLNGIC 253

Query: 267 QSDMLRTWRRLKKKL 281
           ++  L    R ++ +
Sbjct: 254 RTASLHPEERFERNV 268


>gi|242071011|ref|XP_002450782.1| hypothetical protein SORBIDRAFT_05g018050 [Sorghum bicolor]
 gi|241936625|gb|EES09770.1| hypothetical protein SORBIDRAFT_05g018050 [Sorghum bicolor]
          Length = 528

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 204/303 (67%), Positives = 254/303 (83%), Gaps = 1/303 (0%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT LIYGWCK+NR DMA +FL +M++ G+EPN+VTYN+LLNG+CR ASLHP  RF++T+
Sbjct: 226 MYTILIYGWCKVNRNDMARKFLKDMLDHGIEPNIVTYNILLNGICRHASLHPDYRFDRTV 285

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +AE V  EMR RGIEPDVTS+SI+LHVYSRAH+P+L +     MK++GICPTVATY+SV
Sbjct: 286 HSAEDVLKEMRDRGIEPDVTSYSIILHVYSRAHKPELCVCMFRSMKDRGICPTVATYTSV 345

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG- 179
           +KCL SCGR+EDAE LL EMV  GVCPS  TYNCFFKEYRGR D +GA++LY +MK+ G 
Sbjct: 346 IKCLASCGRLEDAETLLDEMVAEGVCPSPATYNCFFKEYRGRNDVSGALQLYNKMKQPGS 405

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           L  P++H+YNIL+GMF+ LNR   V++IW+D+  S +GPDLDSYT+LIHG C  QKW+EA
Sbjct: 406 LTAPDIHTYNILLGMFIKLNRHGSVKDIWSDMCESTVGPDLDSYTLLIHGFCASQKWREA 465

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
           CQ+F+EMIEKG LPQK+TFETLYRGLIQ+DMLRTWRRLK+++DEE+  FG EF+ YH KP
Sbjct: 466 CQFFMEMIEKGFLPQKITFETLYRGLIQADMLRTWRRLKRRVDEEAAKFGDEFKLYHMKP 525

Query: 300 YRR 302
           Y+R
Sbjct: 526 YKR 528



 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 10/89 (11%)

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW------ 236
           PN   Y ILI  +  +NR DM R+   D+   G+ P++ +Y +L++G+C           
Sbjct: 222 PNEKMYTILIYGWCKVNRNDMARKFLKDMLDHGIEPNIVTYNILLNGICRHASLHPDYRF 281

Query: 237 ----KEACQYFVEMIEKGLLPQKVTFETL 261
                 A     EM ++G+ P   ++  +
Sbjct: 282 DRTVHSAEDVLKEMRDRGIEPDVTSYSII 310



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 2/170 (1%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P    Y +VV  L    + + A  ++ +   +G   S  ++    + Y        A++ 
Sbjct: 118 PPPDAYDAVVDALARARQFDAAWRVVVDASADGAA-SPRSFAVLARRYVAAGMTRQAVRA 176

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
           +  M+       N   +  L+          +  EI+N  K     P+   YT+LI+G C
Sbjct: 177 FDDMEAFVGREANSAEFATLLDTLCKYKYPKVATEIFNKRK-YKYNPNEKMYTILIYGWC 235

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +  +   A ++  +M++ G+ P  VT+  L  G+ +   L    R  + +
Sbjct: 236 KVNRNDMARKFLKDMLDHGIEPNIVTYNILLNGICRHASLHPDYRFDRTV 285


>gi|125561327|gb|EAZ06775.1| hypothetical protein OsI_29018 [Oryza sativa Indica Group]
          Length = 511

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 202/303 (66%), Positives = 253/303 (83%), Gaps = 1/303 (0%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT LIYGWCK+NR DMA++FL +MI  G+EPN+VTYN+LLNG+CR ASLHP  RF++T+
Sbjct: 209 MYTVLIYGWCKVNRNDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFDRTV 268

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R AE +  EM  RGIEPDVTS+S++LHVYSRAH+P+L L     MKE+GICPTVATY+SV
Sbjct: 269 RAAEDLLKEMHQRGIEPDVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSV 328

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG- 179
           +KCL SCGR++DAE LL EM   GVCPS  TYNCFFKEYRGRKD NGA++LY +MK  G 
Sbjct: 329 IKCLASCGRLDDAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPGS 388

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              P++H+YNIL+GMF+ LN+ D V ++WND+  S +GPDL+SYT+L+HGLC+ +KW+EA
Sbjct: 389 PATPDIHTYNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWREA 448

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
           CQ+F+EMIE+G LPQK+TFETLYRGLIQ+DMLRTWRRLKK++DEE+  FG EF+ YH KP
Sbjct: 449 CQFFMEMIERGFLPQKITFETLYRGLIQADMLRTWRRLKKRVDEEAAKFGEEFKPYHIKP 508

Query: 300 YRR 302
           Y+R
Sbjct: 509 YKR 511



 Score = 41.6 bits (96), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 2/166 (1%)

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
            Y +VV  L    + + A  L+ E   +G   +  T+    + Y        A++ +  M
Sbjct: 105 AYDAVVDALGRARQFDAAWRLVVEAAADGAA-TPRTFAVLARRYVAAGMTRQAVRAFDDM 163

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           +      P+   +  L+          +  E++N  K     P+   YT+LI+G C+  +
Sbjct: 164 EAFVGREPDAAEFTTLLDTLCKYKYPKVAAEVFNKRK-YKYEPNEKMYTVLIYGWCKVNR 222

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
              A ++  +MI  G+ P  VT+  L  G+ +   L    R  + +
Sbjct: 223 NDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFDRTV 268


>gi|115476116|ref|NP_001061654.1| Os08g0369200 [Oryza sativa Japonica Group]
 gi|113623623|dbj|BAF23568.1| Os08g0369200 [Oryza sativa Japonica Group]
 gi|125603197|gb|EAZ42522.1| hypothetical protein OsJ_27088 [Oryza sativa Japonica Group]
 gi|215740653|dbj|BAG97309.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 511

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 201/303 (66%), Positives = 253/303 (83%), Gaps = 1/303 (0%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT LIYGWCK+NR DMA++FL +MI  G+EPN+VTYN+LLNG+CR ASLHP  RF++T+
Sbjct: 209 MYTVLIYGWCKVNRNDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFDRTV 268

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R AE +  EM  RGIEP+VTS+S++LHVYSRAH+P+L L     MKE+GICPTVATY+SV
Sbjct: 269 RAAEDLLKEMHQRGIEPNVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSV 328

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG- 179
           +KCL SCGR++DAE LL EM   GVCPS  TYNCFFKEYRGRKD NGA++LY +MK  G 
Sbjct: 329 IKCLASCGRLDDAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPGS 388

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              P++H+YNIL+GMF+ LN+ D V ++WND+  S +GPDL+SYT+L+HGLC+ +KW+EA
Sbjct: 389 PATPDIHTYNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWREA 448

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
           CQ+F+EMIE+G LPQK+TFETLYRGLIQ+DMLRTWRRLKK++DEE+  FG EF+ YH KP
Sbjct: 449 CQFFMEMIERGFLPQKITFETLYRGLIQADMLRTWRRLKKRVDEEAAKFGEEFKPYHIKP 508

Query: 300 YRR 302
           Y+R
Sbjct: 509 YKR 511



 Score = 41.6 bits (96), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 2/166 (1%)

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
            Y +VV  L    + + A  L+ E   +G   +  T+    + Y        A++ +  M
Sbjct: 105 AYDAVVDALGRARQFDAAWRLVVEAAADGAA-TPRTFAVLARRYVAAGMTRQAVRAFDDM 163

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           +      P+   +  L+          +  E++N  K     P+   YT+LI+G C+  +
Sbjct: 164 EAFVGREPDAAEFTTLLDTLCKYKYPKVAAEVFNKRK-YKYEPNEKMYTVLIYGWCKVNR 222

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
              A ++  +MI  G+ P  VT+  L  G+ +   L    R  + +
Sbjct: 223 NDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFDRTV 268


>gi|326504802|dbj|BAK06692.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 522

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 202/303 (66%), Positives = 251/303 (82%), Gaps = 1/303 (0%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT LIYGWCK+NR DMA++FL +MI+ G+EPN+VTYN+LLNG+CR ASLHP  RF++T+
Sbjct: 220 MYTILIYGWCKVNRSDMAQKFLKDMIDHGIEPNIVTYNILLNGICRHASLHPDNRFDRTV 279

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE +  EM  RGIEPDVTS+SI+LHVYSRAH+ +L L     MK++GICPTVATY+SV
Sbjct: 280 NAAENLLKEMNDRGIEPDVTSYSIILHVYSRAHKAELCLCMFRSMKDRGICPTVATYTSV 339

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED-G 179
           +KCL SCGR+EDAE LLGEMV  GVCPS  TYNCFFKEYRGRKD +GA++LY +MK    
Sbjct: 340 IKCLASCGRLEDAESLLGEMVSEGVCPSPATYNCFFKEYRGRKDVSGALELYNKMKAPCS 399

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              P++HSYNIL+GMF+ L+R + V E+WND+    +GPDLDSYT+L+HG C K+KW+EA
Sbjct: 400 PTAPDIHSYNILLGMFIKLDRHETVMELWNDMCERAVGPDLDSYTLLVHGFCAKEKWREA 459

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
           CQ+F+EMIEKG LPQK+TFET YRGLIQ+DMLRTWRRLKK++DEES  FG E+++YH KP
Sbjct: 460 CQFFMEMIEKGFLPQKITFETPYRGLIQADMLRTWRRLKKRVDEESAKFGDEYKSYHIKP 519

Query: 300 YRR 302
           Y+R
Sbjct: 520 YKR 522



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 2/171 (1%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P    Y +VV  L    + + A  L+ E   +G   +  T+    + Y        A++ 
Sbjct: 112 PNADAYDAVVDALGRAHQFDAAWRLVVEAAADGAA-TPRTFAVLARRYVAAGLTRQAVRA 170

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
           +  M+      P+   +  L+          +  E++N  K     P+   YT+LI+G C
Sbjct: 171 FDDMEAFLGREPDAQEFTTLLDTLCKYKYPKVAVEVFNKRK-YKYEPNEKMYTILIYGWC 229

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           +  +   A ++  +MI+ G+ P  VT+  L  G+ +   L    R  + ++
Sbjct: 230 KVNRSDMAQKFLKDMIDHGIEPNIVTYNILLNGICRHASLHPDNRFDRTVN 280



 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 4/156 (2%)

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           P+  ++  V+    RAHQ   +   +      G   T  T++ + +   + G    A   
Sbjct: 112 PNADAYDAVVDALGRAHQFDAAWRLVVEAAADGAA-TPRTFAVLARRYVAAGLTRQAVRA 170

Query: 137 LGEM-VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
             +M    G  P A+ +          K    A++++ + K      PN   Y ILI  +
Sbjct: 171 FDDMEAFLGREPDAQEFTTLLDTLCKYKYPKVAVEVFNKRKYK--YEPNEKMYTILIYGW 228

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
             +NR DM ++   D+   G+ P++ +Y +L++G+C
Sbjct: 229 CKVNRSDMAQKFLKDMIDHGIEPNIVTYNILLNGIC 264


>gi|357156708|ref|XP_003577549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Brachypodium distachyon]
          Length = 522

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 204/303 (67%), Positives = 250/303 (82%), Gaps = 1/303 (0%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT LIYGWCK+NR DM+++FL +MI+ G+EPNVVTYN+LLNGVCR ASLHP  RF++T+
Sbjct: 220 MYTILIYGWCKVNRNDMSQKFLKDMIDHGIEPNVVTYNILLNGVCRHASLHPDNRFDRTV 279

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R AE +  EMR RGIEPDVTS+SIVLHVYSRAH+ +L L     MK++GICPTVATY+SV
Sbjct: 280 RAAEDLLKEMRDRGIEPDVTSYSIVLHVYSRAHKAELCLCMFRSMKDRGICPTVATYTSV 339

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +KCL SCGR+EDAE LL EM   GVCPS  TYNCFFKEYRGRKD  GA++LY++MK    
Sbjct: 340 IKCLASCGRLEDAERLLHEMASEGVCPSPATYNCFFKEYRGRKDVIGALELYKKMKAPAS 399

Query: 181 -CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              P++HSY+IL+GMF+ LN+   V E+WND+  S +GPDLDSYT+LIHG CE +KW+EA
Sbjct: 400 PTAPDIHSYHILLGMFVKLNQHGTVTELWNDMCESTVGPDLDSYTLLIHGFCENEKWREA 459

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
           CQ+F+EMIEKG LPQK+TFE LYRGLIQ+DMLRTWRRLKK++DEE+  FG E++ YH KP
Sbjct: 460 CQFFMEMIEKGFLPQKITFEILYRGLIQADMLRTWRRLKKRVDEEAAKFGDEYKLYHIKP 519

Query: 300 YRR 302
           Y+R
Sbjct: 520 YKR 522



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 68/166 (40%), Gaps = 2/166 (1%)

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
            Y +VV  L    + + A  L+ E   +G   S  T+    + Y        A++ +  M
Sbjct: 116 AYDAVVDALGRAHQFDAAWRLVVEAAADGAATS-RTFAVLARRYVAAGMTRQAVRAFDDM 174

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           +      P+   +  L+          +  E++N  K     P+   YT+LI+G C+  +
Sbjct: 175 EAFVGREPDAGEFTTLLDTLCKYKYPKVATEVFNKRK-YKYEPNEKMYTILIYGWCKVNR 233

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
              + ++  +MI+ G+ P  VT+  L  G+ +   L    R  + +
Sbjct: 234 NDMSQKFLKDMIDHGIEPNVVTYNILLNGVCRHASLHPDNRFDRTV 279


>gi|413939122|gb|AFW73673.1| hypothetical protein ZEAMMB73_530264 [Zea mays]
          Length = 526

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 201/303 (66%), Positives = 247/303 (81%), Gaps = 1/303 (0%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY+ LIYGWCK+NR DMA++FL +M+  G+EPN+VTYN+LLNG+CR ASLHP  RF++T+
Sbjct: 224 MYSILIYGWCKVNRSDMAKKFLKDMLVHGIEPNIVTYNILLNGICRHASLHPDYRFDRTV 283

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE +  EMR RGIEPDVTS+SI+LHVYSRAH+P+L L     MKE+GICPTVATY+SV
Sbjct: 284 HAAEDLLKEMRGRGIEPDVTSYSIILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSV 343

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG- 179
           +KCL SCGR+ED E LL EMV  GVCPS  TYNCF KEYRGRKD   A++LY +MK  G 
Sbjct: 344 IKCLSSCGRLEDGEILLDEMVAEGVCPSPATYNCFLKEYRGRKDVTAALELYNKMKAPGS 403

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           L  P++H+YNIL+GMF  LNR   V +IW+D+  S +GPDLDSYT+LIH  C+ QKW+EA
Sbjct: 404 LTAPDIHTYNILLGMFSKLNRHGTVMDIWSDMCESTVGPDLDSYTLLIHCFCDSQKWREA 463

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
           CQ+F+EMIEKG LPQK+TFETLYRGLIQ+DMLRTWRRLK+++DEE+  FG EF+ YH KP
Sbjct: 464 CQFFMEMIEKGFLPQKITFETLYRGLIQADMLRTWRRLKRRVDEEAAKFGDEFKLYHMKP 523

Query: 300 YRR 302
           Y+R
Sbjct: 524 YKR 526



 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 34/170 (20%), Positives = 69/170 (40%), Gaps = 2/170 (1%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P    Y +VV  L    + + A  ++ +   +G   S  T+    + Y        A++ 
Sbjct: 116 PRSDAYDAVVDALGRARQFDAAWRVVVDASADGAA-SPRTFAVLARRYVAAGMTRQAIRA 174

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
           +  M+      P+   +  L+          +  E++N  K    GP+   Y++LI+G C
Sbjct: 175 FDDMEAFVSREPDAAEFATLLDTLCKYKYPKVATEVFNKRK-YKYGPNEKMYSILIYGWC 233

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +  +   A ++  +M+  G+ P  VT+  L  G+ +   L    R  + +
Sbjct: 234 KVNRSDMAKKFLKDMLVHGIEPNIVTYNILLNGICRHASLHPDYRFDRTV 283


>gi|413953911|gb|AFW86560.1| hypothetical protein ZEAMMB73_703962 [Zea mays]
          Length = 287

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 189/287 (65%), Positives = 233/287 (81%), Gaps = 1/287 (0%)

Query: 17  MAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIE 76
           MA++FL +M+  G+EPN+VTYN+LLNG+CR ASLHP  RF++T+  AE +  EMR RGIE
Sbjct: 1   MAKKFLKDMLVHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVHAAEDLLKEMRGRGIE 60

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           PDVTS+SI+LHVYSRAH+P+L L     MKE+GICPTVATY+SV+KCL SCGR+ED E L
Sbjct: 61  PDVTSYSIILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLSSCGRLEDGEIL 120

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG-LCVPNMHSYNILIGMF 195
           L EMV  GVCPS  TYNCF KEYRGRKD   A++LY +MK  G L  P++H+YNIL+GMF
Sbjct: 121 LDEMVAEGVCPSPATYNCFLKEYRGRKDVTAALELYNKMKAPGSLTAPDIHTYNILLGMF 180

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
             LNR   V +IW+D+  S +GPDLDSYT+LIH  C+ QKW+EACQ+F+EMIEKG LPQK
Sbjct: 181 SKLNRHGTVMDIWSDMCESTVGPDLDSYTLLIHCFCDSQKWREACQFFMEMIEKGFLPQK 240

Query: 256 VTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR 302
           +TFETLYRGLIQ+DMLRTWRRLK+++DEE+  FG EF+ YH KPY+R
Sbjct: 241 ITFETLYRGLIQADMLRTWRRLKRRVDEEAAKFGDEFKLYHMKPYKR 287



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 86/177 (48%), Gaps = 16/177 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTS+I       R++  E  L EM+  GV P+  TYN  L             R  K + 
Sbjct: 101 YTSVIKCLSSCGRLEDGEILLDEMVAEGVCPSPATYNCFLK----------EYRGRKDVT 150

Query: 62  NAEKVFDEMRVRG--IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
            A +++++M+  G    PD+ +++I+L ++S+ ++    +D  + M E  + P + +Y+ 
Sbjct: 151 AALELYNKMKAPGSLTAPDIHTYNILLGMFSKLNRHGTVMDIWSDMCESTVGPDLDSYTL 210

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           ++ C C   +  +A +   EM+  G  P   T+      YRG   A+  ++ +R++K
Sbjct: 211 LIHCFCDSQKWREACQFFMEMIEKGFLPQKITFETL---YRGLIQAD-MLRTWRRLK 263



 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI- 60
           YT LI+ +C   +   A +F  EMIE+G  P  +T+  L  G+ +   L    R ++ + 
Sbjct: 208 YTLLIHCFCDSQKWREACQFFMEMIEKGFLPQKITFETLYRGLIQADMLRTWRRLKRRVD 267

Query: 61  RNAEKVFDEMRVRGIEP 77
             A K  DE ++  ++P
Sbjct: 268 EEAAKFGDEFKLYHMKP 284


>gi|326504240|dbj|BAJ90952.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 263

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 171/258 (66%), Positives = 211/258 (81%), Gaps = 1/258 (0%)

Query: 46  RRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFM 105
           R ASLHP  RF++T+  AE +  EM  RGIEPDVTS+SI+LHVYSRAH+ +L L     M
Sbjct: 6   RHASLHPDNRFDRTVNAAENLLKEMNDRGIEPDVTSYSIILHVYSRAHKAELCLCMFRSM 65

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
           K++GICPTVATY+SV+KCL SCGR+EDAE LLGEMV  GVCPS  TYNCFFKEYRGRKD 
Sbjct: 66  KDRGICPTVATYTSVIKCLASCGRLEDAESLLGEMVSEGVCPSPATYNCFFKEYRGRKDV 125

Query: 166 NGAMKLYRQMKED-GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
           +GA++LY +MK       P++HSYNIL+GMF+ L+R + V E+WND+    +GPDLDSYT
Sbjct: 126 SGALELYNKMKAPCSPTAPDIHSYNILLGMFIKLDRHETVMELWNDMCERAVGPDLDSYT 185

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
           +L+HG C K+KW+EACQ+F+EMIEKG LPQK+TFETLYRGLIQ+DMLRTWRRLKK++DEE
Sbjct: 186 LLVHGFCAKEKWREACQFFMEMIEKGFLPQKITFETLYRGLIQADMLRTWRRLKKRVDEE 245

Query: 285 SITFGSEFQNYHFKPYRR 302
           S  FG E+++YH KPY+R
Sbjct: 246 SAKFGDEYKSYHIKPYKR 263



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 16/178 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTS+I       R++ AE  LGEM+  GV P+  TYN                R  K + 
Sbjct: 77  YTSVIKCLASCGRLEDAESLLGEMVSEGVCPSPATYNCFFK----------EYRGRKDVS 126

Query: 62  NAEKVFDEMRV--RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
            A +++++M+       PD+ S++I+L ++ +  + +  ++  N M E+ + P + +Y+ 
Sbjct: 127 GALELYNKMKAPCSPTAPDIHSYNILLGMFIKLDRHETVMELWNDMCERAVGPDLDSYTL 186

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           +V   C+  +  +A +   EM+  G  P   T+      YRG   A+  ++ +R++K+
Sbjct: 187 LVHGFCAKEKWREACQFFMEMIEKGFLPQKITFETL---YRGLIQAD-MLRTWRRLKK 240



 Score = 41.2 bits (95), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI- 60
           YT L++G+C   +   A +F  EMIE+G  P  +T+  L  G+ +   L    R +K + 
Sbjct: 184 YTLLVHGFCAKEKWREACQFFMEMIEKGFLPQKITFETLYRGLIQADMLRTWRRLKKRVD 243

Query: 61  RNAEKVFDEMRVRGIEP 77
             + K  DE +   I+P
Sbjct: 244 EESAKFGDEYKSYHIKP 260


>gi|242049112|ref|XP_002462300.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
 gi|241925677|gb|EER98821.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
          Length = 541

 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 87/257 (33%), Positives = 148/257 (57%), Gaps = 11/257 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI GW  + + + A++   EMIERGV+P+V  YN L++ +CR   +  ++       
Sbjct: 219 YTILISGWAVVAKPEKAQKLFDEMIERGVQPDVPAYNALIDALCRGGDVALAQ------- 271

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             E++ D  R RG+ PD  ++   L     +   + +L  L+ M+ + + P V TY++V+
Sbjct: 272 --EQLKDMQRSRGLAPDAATYGPFLRSACASKDARAALRVLDRMRARSLTPNVFTYNAVI 329

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  G +++A  +L EM   G  P   +YN     +   K+ N A++L  +M E GLC
Sbjct: 330 RLLCELGEVDEAYNILNEMATYGEKPDVWSYNTLLNTHCKLKEVNKALRLISRMDE-GLC 388

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL-CEKQKWKEAC 240
           +PN HSYN+++ M +A+ R+D   E+W+ ++  G  P   +Y ++IHGL C+K + +EAC
Sbjct: 389 LPNRHSYNMILKMLIAIGRVDRAIEVWDGMEKRGFHPGAATYAVMIHGLSCKKGRAEEAC 448

Query: 241 QYFVEMIEKGLLPQKVT 257
            YF+ M++ G+ P + T
Sbjct: 449 SYFLRMVDDGIPPYQAT 465



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 5/188 (2%)

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM- 140
           F ++   Y+RA  P  ++   + M+  G  PTVA   S++  L   G +E AE    E  
Sbjct: 150 FPLLFRAYARAGLPDDAIRAFSSMERFGFLPTVADLHSLLFTLSHNGLVEHAEAFFRESP 209

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
           ++  V  SA+TY      +        A KL+ +M E G+  P++ +YN LI        
Sbjct: 210 IQFDV--SAKTYTILISGWAVVAKPEKAQKLFDEMIERGV-QPDVPAYNALIDALCRGGD 266

Query: 201 MDMVREIWNDVKGS-GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           + + +E   D++ S GL PD  +Y   +   C  +  + A +    M  + L P   T+ 
Sbjct: 267 VALAQEQLKDMQRSRGLAPDAATYGPFLRSACASKDARAALRVLDRMRARSLTPNVFTYN 326

Query: 260 TLYRGLIQ 267
            + R L +
Sbjct: 327 AVIRLLCE 334


>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
 gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
          Length = 523

 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 95/271 (35%), Positives = 145/271 (53%), Gaps = 12/271 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ GW  I     A +   EM  RG   +V+ YN LL  +C+  +          + 
Sbjct: 220 YSILVRGWGDIGEAVEARKVFDEMRGRGCALDVLAYNSLLEALCKGGN----------VD 269

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F E+   G+EPD  S++I +  Y  A+        L+ MK   + P V TY+ ++
Sbjct: 270 EAYKMFREIGSHGVEPDACSYAIFIRAYCEANNIHSVFSVLDRMKRYDLVPNVFTYNCII 329

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC  G++EDA +LL EM+  GV P A +YN     +    + N A KL   M +D  C
Sbjct: 330 KKLCKNGKVEDAYQLLHEMMERGVSPDAWSYNTILAYHCEHSEVNRATKLISIMVKDN-C 388

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ-KWKEAC 240
           +P+ HSYN+L+ + + + R D   EIW  +   G  P + +Y+++IHGLC+K+ K +EAC
Sbjct: 389 LPDRHSYNMLLKLLVRVGRFDRATEIWESMGERGFYPSVSTYSVMIHGLCKKKGKLEEAC 448

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           +YF  MI++G+ P   T E L   LI   +L
Sbjct: 449 RYFETMIDEGIPPYASTIEMLRNRLIGFGLL 479



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 2/200 (1%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A + FD M   G+ P V     +L+V  +    + +    + +K K       TYS +V
Sbjct: 166 DAIRAFDRMAEFGLRPSVDDLDKLLYVLCKCKHVKCAQQFFDRVKHK-FEAKAKTYSILV 224

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +     G   +A ++  EM   G       YN   +      + + A K++R++   G+ 
Sbjct: 225 RGWGDIGEAVEARKVFDEMRGRGCALDVLAYNSLLEALCKGGNVDEAYKMFREIGSHGV- 283

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  SY I I  +   N +  V  + + +K   L P++ +Y  +I  LC+  K ++A Q
Sbjct: 284 EPDACSYAIFIRAYCEANNIHSVFSVLDRMKRYDLVPNVFTYNCIIKKLCKNGKVEDAYQ 343

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              EM+E+G+ P   ++ T+
Sbjct: 344 LLHEMMERGVSPDAWSYNTI 363



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 93/204 (45%), Gaps = 2/204 (0%)

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
           +V   YSRA+ P  ++   + M E G+ P+V     ++  LC C  ++ A++   + V++
Sbjct: 153 LVFRSYSRANLPSDAIRAFDRMAEFGLRPSVDDLDKLLYVLCKCKHVKCAQQFF-DRVKH 211

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
                A+TY+   + +    +A  A K++ +M+  G C  ++ +YN L+        +D 
Sbjct: 212 KFEAKAKTYSILVRGWGDIGEAVEARKVFDEMRGRG-CALDVLAYNSLLEALCKGGNVDE 270

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             +++ ++   G+ PD  SY + I   CE             M    L+P   T+  + +
Sbjct: 271 AYKMFREIGSHGVEPDACSYAIFIRAYCEANNIHSVFSVLDRMKRYDLVPNVFTYNCIIK 330

Query: 264 GLIQSDMLRTWRRLKKKLDEESIT 287
            L ++  +    +L  ++ E  ++
Sbjct: 331 KLCKNGKVEDAYQLLHEMMERGVS 354


>gi|218202055|gb|EEC84482.1| hypothetical protein OsI_31142 [Oryza sativa Indica Group]
          Length = 586

 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 141/261 (54%), Gaps = 11/261 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI GW  + + + A     EM+ERGVE +V  YN L++ +CR   +  ++       
Sbjct: 234 YTILISGWAVVKKPENARSLFDEMVERGVELDVHVYNALIDALCRGGDITSAQ------- 286

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             E++ +  +  G+ P+  ++   LH    +   + +L  L+ M    + P V TY++V+
Sbjct: 287 --EQLSNMQKSHGLVPNAATYGPFLHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVI 344

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  G I +A  +L E+   G  P   +YN     +   K+ N A++L  +M ++ LC
Sbjct: 345 RLLCDLGEINEAYNILDEITTQGEKPDVWSYNTLLNAHCKLKEVNKALRLISRMDKE-LC 403

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ-KWKEAC 240
            P+ HSYN+L+ M + + R D   E+W+ ++  G  P   +Y ++IHGL  K+ + ++AC
Sbjct: 404 PPDRHSYNMLLKMLIGVGRFDTAIEVWDGMEKRGFHPGAATYAVMIHGLASKKGRAEDAC 463

Query: 241 QYFVEMIEKGLLPQKVTFETL 261
            YFV M+++G+ P + T E L
Sbjct: 464 SYFVRMVDEGIPPYQATCEVL 484



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 121/267 (45%), Gaps = 13/267 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++  L   + +    + A R    M   G  P +  ++ LL  + R   +   ERF    
Sbjct: 164 LFPLLFRAYSRARLPEDAIRAFSSMAGFGFPPTIADFHSLLFALSRNGLVEYGERF---F 220

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R +   FD            +++I++  ++   +P+ +    + M E+G+   V  Y+++
Sbjct: 221 RESSAQFDV--------SAKAYTILISGWAVVKKPENARSLFDEMVERGVELDVHVYNAL 272

Query: 121 VKCLCSCGRIEDAEELLGEMVRN-GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +  LC  G I  A+E L  M ++ G+ P+A TY  F       KD   A+++  +M    
Sbjct: 273 IDALCRGGDITSAQEQLSNMQKSHGLVPNAATYGPFLHAACASKDVRAALRVLDRMHTHA 332

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           L  PN+ +YN +I +   L  ++    I +++   G  PD+ SY  L++  C+ ++  +A
Sbjct: 333 L-TPNVFTYNAVIRLLCDLGEINEAYNILDEITTQGEKPDVWSYNTLLNAHCKLKEVNKA 391

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLI 266
            +    M ++   P + ++  L + LI
Sbjct: 392 LRLISRMDKELCPPDRHSYNMLLKMLI 418


>gi|222641466|gb|EEE69598.1| hypothetical protein OsJ_29150 [Oryza sativa Japonica Group]
          Length = 579

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 142/261 (54%), Gaps = 11/261 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI GW  + + + A     EM++RGVE +V  YN L++ +CR   +  ++       
Sbjct: 227 YTILISGWAVVKKPENARSLFDEMVKRGVELDVHVYNALIDALCRGGDITSAQ------- 279

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             E++ +  +  G+ P+  ++   LH    +   + +L  L+ M    + P V TY++V+
Sbjct: 280 --EQLSNMQKSHGLVPNAATYGPFLHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVI 337

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  G I +A  +L E+   G  P   +YN     +   K+ N A++L  +M ++ LC
Sbjct: 338 RLLCDLGEINEAYNILDEITTQGEKPDVWSYNTLLNAHCKLKEVNKALRLISRMDKE-LC 396

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ-KWKEAC 240
            P+ HSYN+L+ M +++ R D   E+W+ ++  G  P   +Y ++IHGL  K+ + ++AC
Sbjct: 397 PPDRHSYNMLLKMLISVGRFDTAIEVWDGMEKRGFHPGAATYAVMIHGLASKKGRAEDAC 456

Query: 241 QYFVEMIEKGLLPQKVTFETL 261
            YFV M+++G+ P + T E L
Sbjct: 457 SYFVRMVDEGIPPYQATCEVL 477



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 127/285 (44%), Gaps = 17/285 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++  L   + +    + A R    M   G  P +  ++ LL  + R   +   ERF    
Sbjct: 157 LFPLLFRAYSRARLPEDAIRAFSSMAGFGFPPTIADFHSLLFALSRNGLVEYGERF---F 213

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R +   FD            +++I++  ++   +P+ +    + M ++G+   V  Y+++
Sbjct: 214 RESTAQFDV--------SAKAYTILISGWAVVKKPENARSLFDEMVKRGVELDVHVYNAL 265

Query: 121 VKCLCSCGRIEDAEELLGEMVRN-GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +  LC  G I  A+E L  M ++ G+ P+A TY  F       KD   A+++  +M    
Sbjct: 266 IDALCRGGDITSAQEQLSNMQKSHGLVPNAATYGPFLHAACASKDVRAALRVLDRMHTHA 325

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           L  PN+ +YN +I +   L  ++    I +++   G  PD+ SY  L++  C+ ++  +A
Sbjct: 326 L-TPNVFTYNAVIRLLCDLGEINEAYNILDEITTQGEKPDVWSYNTLLNAHCKLKEVNKA 384

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLKKK 280
            +    M ++   P + ++  L + LI        +  W  ++K+
Sbjct: 385 LRLISRMDKELCPPDRHSYNMLLKMLISVGRFDTAIEVWDGMEKR 429


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/282 (32%), Positives = 151/282 (53%), Gaps = 12/282 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTSL++GWC+   I  AE    +M E GV+PNV TY+++++ +CR             I
Sbjct: 249 VYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQ----------I 298

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  VF EM   G +P+  +F+ ++ V+ +A + +  L   N MK  G      +Y+ +
Sbjct: 299 TRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFL 358

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C    +++A ++L  MV+ GV P+A T+N  F       D NGA ++Y +MKE   
Sbjct: 359 IESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELK- 417

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C+PN  +YNIL+ MF     +DMV ++  ++  S + P++++Y +LI   CEK  W  A 
Sbjct: 418 CMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILMFCEKGHWNNAY 477

Query: 241 QYFVEMI-EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
               EM+ EK L P    +ET+   L  +  L+    L +K+
Sbjct: 478 NLMKEMVEEKCLKPNLSIYETVLELLRNAGQLKKHEELVEKM 519



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 136/287 (47%), Gaps = 16/287 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC--RRASLHPSERFEKT 59
           ++ L+  + +      A      M + G +P+ V+++++++ +C  RRAS          
Sbjct: 181 FSVLVRRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRAS---------- 230

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
              AE  FD ++ +  EPDV  ++ ++H + RA     + +  + MKE G+ P V TYS 
Sbjct: 231 --EAELFFDSLKHK-FEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSI 287

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           V+  LC CG+I  A ++  EM+  G  P+A T+N   + +         +++Y QMK  G
Sbjct: 288 VIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLG 347

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C  +  SYN LI        +D   ++ + +   G+ P+  ++  +   + E      A
Sbjct: 348 -CAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGA 406

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            + + +M E   +P  +T+  L R    S  +    +LKK++DE  +
Sbjct: 407 HRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEV 453



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 35/255 (13%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG------------- 109
           A  + D M+ RG+   V++FS+++  Y RA     ++   N M++ G             
Sbjct: 162 AWHLIDLMKSRGVRITVSTFSVLVRRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVIS 221

Query: 110 -IC--------------------PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
            +C                    P V  Y+S+V   C  G I  AEE+  +M   GV P+
Sbjct: 222 SLCKKRRASEAELFFDSLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPN 281

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             TY+              A  ++ +M + G C PN  ++N L+ + +   R + V +++
Sbjct: 282 VYTYSIVIDSLCRCGQITRAHDVFSEMIDAG-CDPNAVTFNSLMRVHVKAGRTEKVLQVY 340

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           N +K  G   D  SY  LI   C+ +   EA +    M++KG+ P   TF +++  + + 
Sbjct: 341 NQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAEL 400

Query: 269 DMLRTWRRLKKKLDE 283
             +    R+  K+ E
Sbjct: 401 HDVNGAHRMYAKMKE 415



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 34/173 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  LI   CK   +D A + L  M+++GV PN  T+N +   +     ++ + R      
Sbjct: 355 YNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMK 414

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY-SRAHQP 95
                                K+I    K+  EM    +EP+V ++ I++ ++  + H  
Sbjct: 415 ELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILMFCEKGHWN 474

Query: 96  QLSLDKLNFMKE----KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
               +  N MKE    K + P ++ Y +V++ L + G+++  EEL+ +MV  G
Sbjct: 475 ----NAYNLMKEMVEEKCLKPNLSIYETVLELLRNAGQLKKHEELVEKMVARG 523


>gi|297853022|ref|XP_002894392.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340234|gb|EFH70651.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 525

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 139/266 (52%), Gaps = 12/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ GW +I     A +   EM+E     +++ YN LL+ +C+             + 
Sbjct: 211 YSILVRGWARIRDASGARKVFDEMLENNCVVDLLAYNALLDALCKSGD----------VD 260

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F EM   G++PD  SF+I +H Y  A     +   L+ MK   + P V T++ ++
Sbjct: 261 GAYKMFQEMGNLGLKPDAYSFAIFIHSYCDASDVHSAYQVLDRMKRYDLVPNVYTFNHII 320

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC   +++DA  LL EM++ G  P   TYN     +    + N A KL  +M     C
Sbjct: 321 KTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTK-C 379

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ-KWKEAC 240
           +P+ H+YN+++ + + + R D V EIW  +      P + +YT++IHGL  K+ K +EAC
Sbjct: 380 LPDRHTYNMVLKLLIRIGRFDRVTEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEAC 439

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLI 266
           +YF  MI++G+ P   T E L   L+
Sbjct: 440 RYFEMMIDEGIPPYSTTVEMLRNRLV 465



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 1/188 (0%)

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           F IV   YSRA+ P  +    N M E GI P V     ++  LC    +  A+E   +  
Sbjct: 141 FWIVFRAYSRANLPSEASRAFNRMVEFGIKPCVDDLDQLLHSLCDRKHVNHAQEFFDKAK 200

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
             G+ PSA+TY+   + +   +DA+GA K++ +M E+  CV ++ +YN L+        +
Sbjct: 201 GFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLENN-CVVDLLAYNALLDALCKSGDV 259

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           D   +++ ++   GL PD  S+ + IH  C+      A Q    M    L+P   TF  +
Sbjct: 260 DGAYKMFQEMGNLGLKPDAYSFAIFIHSYCDASDVHSAYQVLDRMKRYDLVPNVYTFNHI 319

Query: 262 YRGLIQSD 269
            + L +++
Sbjct: 320 IKTLCKNE 327



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 119/260 (45%), Gaps = 11/260 (4%)

Query: 8   GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVF 67
            + + N    A R    M+E G++P V   + LL+ +C R          K + +A++ F
Sbjct: 147 AYSRANLPSEASRAFNRMVEFGIKPCVDDLDQLLHSLCDR----------KHVNHAQEFF 196

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127
           D+ +  GI P   ++SI++  ++R      +    + M E      +  Y++++  LC  
Sbjct: 197 DKAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLENNCVVDLLAYNALLDALCKS 256

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
           G ++ A ++  EM   G+ P A ++  F   Y    D + A ++  +MK   L VPN+++
Sbjct: 257 GDVDGAYKMFQEMGNLGLKPDAYSFAIFIHSYCDASDVHSAYQVLDRMKRYDL-VPNVYT 315

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           +N +I       ++D    + +++   G  PD  +Y  ++   C+  +   A +    M 
Sbjct: 316 FNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMD 375

Query: 248 EKGLLPQKVTFETLYRGLIQ 267
               LP + T+  + + LI+
Sbjct: 376 RTKCLPDRHTYNMVLKLLIR 395



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 26/171 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS----ERFE 57
           +  +I   CK  ++D A   L EMI++G  P+  TYN ++   C    ++ +     R +
Sbjct: 316 FNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMD 375

Query: 58  KT----------------IR-----NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH-QP 95
           +T                IR        ++++ M  R   P V ++++++H   R   + 
Sbjct: 376 RTKCLPDRHTYNMVLKLLIRIGRFDRVTEIWEGMSERKFYPTVATYTVMIHGLVRKKGKL 435

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
           + +      M ++GI P   T   +   L   G+++  + L G+M R+  C
Sbjct: 436 EEACRYFEMMIDEGIPPYSTTVEMLRNRLVGWGQMDVVDVLAGKMERSSSC 486


>gi|255552099|ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543729|gb|EEF45257.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 549

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 151/278 (54%), Gaps = 11/278 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L++G+CK  ++D A + + EM ++G +PNVV+Y   +   C+           K  R
Sbjct: 272 FNILLHGYCKARKLDDARKIMDEMDKQGFQPNVVSYTCFIELYCKL----------KDFR 321

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N E +F EM+ +  +P+V +++I +H   +A Q   +L+    MK     P  + YSS++
Sbjct: 322 NVEAIFSEMQEKSCKPNVITYTIFMHALGKAKQVNKALEVYEMMKSNCCVPDASFYSSLI 381

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR++DA ++  +M + GV P   TYN          +   A+KL R+M+ED  C
Sbjct: 382 FVLTQSGRLKDAWDVFEDMKKQGVSPDLLTYNTMITSACTHLEEENALKLLRRMEEDS-C 440

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  L+ M     R+ +++ + N +  + +  DL +Y +L+ GLC+  K + AC 
Sbjct: 441 KPDIQTYAPLLKMCCRKKRIKVLKFLLNHMFKNNISIDLGTYVLLVGGLCKSGKLELACS 500

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
           +F EM+ KGL+P+  T++ L   L Q+++     +++K
Sbjct: 501 FFEEMVMKGLIPRDRTYKMLVEELEQNNLTEAKEKIQK 538



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 15/252 (5%)

Query: 13  NRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMR 71
           N  D  E F G  IE+ GV  ++   NVL++ + +          E ++ +A   F E +
Sbjct: 215 NFQDAVEAFRG--IEKLGVRKDIEALNVLMDALVK----------EGSVEHAYSAFMEFK 262

Query: 72  VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIE 131
              I  D  SF+I+LH Y +A +   +   ++ M ++G  P V +Y+  ++  C      
Sbjct: 263 -DSIHVDFQSFNILLHGYCKARKLDDARKIMDEMDKQGFQPNVVSYTCFIELYCKLKDFR 321

Query: 132 DAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNIL 191
           + E +  EM      P+  TY  F       K  N A+++Y  MK +  CVP+   Y+ L
Sbjct: 322 NVEAIFSEMQEKSCKPNVITYTIFMHALGKAKQVNKALEVYEMMKSN-CCVPDASFYSSL 380

Query: 192 IGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 251
           I +     R+    +++ D+K  G+ PDL +Y  +I   C   + + A +    M E   
Sbjct: 381 IFVLTQSGRLKDAWDVFEDMKKQGVSPDLLTYNTMITSACTHLEEENALKLLRRMEEDSC 440

Query: 252 LPQKVTFETLYR 263
            P   T+  L +
Sbjct: 441 KPDIQTYAPLLK 452



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 10/174 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI+   +  R+  A     +M ++GV P+++TYN ++   C     H  E       
Sbjct: 377 YSSLIFVLTQSGRLKDAWDVFEDMKKQGVSPDLLTYNTMITSACT----HLEEE------ 426

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA K+   M     +PD+ +++ +L +  R  + ++    LN M +  I   + TY  +V
Sbjct: 427 NALKLLRRMEEDSCKPDIQTYAPLLKMCCRKKRIKVLKFLLNHMFKNNISIDLGTYVLLV 486

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
             LC  G++E A     EMV  G+ P   TY    +E           K+ + M
Sbjct: 487 GGLCKSGKLELACSFFEEMVMKGLIPRDRTYKMLVEELEQNNLTEAKEKIQKLM 540


>gi|255580124|ref|XP_002530894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529547|gb|EEF31500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 148/285 (51%), Gaps = 12/285 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ GW  I     A +   EM E+    +V+ YN LL   C+             + 
Sbjct: 216 YSILVRGWGDIGESVSACKVFDEMREQQCAVDVLAYNSLLEAFCKGGK----------VS 265

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F EM   GI+PD  +FSI +  Y  A+   L+   L+ MK   + P V TY+ ++
Sbjct: 266 EAYKMFREMGSNGIKPDACTFSIFIRAYCEANDIHLAYRVLDEMKRYDLVPNVFTYNCMI 325

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC   ++E+A +LL E++     P A +YN     +    + N A +L  +M +D  C
Sbjct: 326 KKLCKKEKVEEAYQLLNEIIERSGQPDAWSYNAILAYHCEHSEVNSATRLISRMVKDN-C 384

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ-KWKEAC 240
           +P+ HSYN+L+ + + + R D   E+W  +   G  P + +Y++++HGLC+K+ K +EAC
Sbjct: 385 LPDKHSYNMLLKLLIRVGRFDRAIEVWESMGEKGFYPSVSTYSVMVHGLCKKKGKLEEAC 444

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           +YF  MI++G+ P   T E L   LI   +L     L  K++  +
Sbjct: 445 KYFEMMIDEGIPPYSSTVEILRNRLIGLGLLDYIEILAGKMEHST 489



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 101/211 (47%), Gaps = 4/211 (1%)

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           I P V  F +V   YSRA+ P  ++   + M E G+ PT+     ++  LC     + A+
Sbjct: 142 ISPQV--FWLVFRAYSRANLPSDAIRAFDRMVEFGLKPTIDDLDQLLYVLCKRKHAKHAQ 199

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           ++  + V++     A+TY+   + +    ++  A K++ +M+E   C  ++ +YN L+  
Sbjct: 200 QIF-DRVKHQFQTRAKTYSILVRGWGDIGESVSACKVFDEMREQQ-CAVDVLAYNSLLEA 257

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
           F    ++    +++ ++  +G+ PD  ++++ I   CE      A +   EM    L+P 
Sbjct: 258 FCKGGKVSEAYKMFREMGSNGIKPDACTFSIFIRAYCEANDIHLAYRVLDEMKRYDLVPN 317

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
             T+  + + L + + +    +L  ++ E S
Sbjct: 318 VFTYNCMIKKLCKKEKVEEAYQLLNEIIERS 348



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 46/185 (24%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I   CK  +++ A + L E+IER  +P+  +YN +L   C  +           + 
Sbjct: 321 YNCMIKKLCKKEKVEEAYQLLNEIIERSGQPDAWSYNAILAYHCEHSE----------VN 370

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++   M      PD  S++++L +  R  +   +++    M EKG  P+V+TYS +V
Sbjct: 371 SATRLISRMVKDNCLPDKHSYNMLLKLLIRVGRFDRAIEVWESMGEKGFYPSVSTYSVMV 430

Query: 122 KCLCSC-GRIEDA-----------------------------------EELLGEMVRNGV 145
             LC   G++E+A                                   E L G+M  +  
Sbjct: 431 HGLCKKKGKLEEACKYFEMMIDEGIPPYSSTVEILRNRLIGLGLLDYIEILAGKMEHSTA 490

Query: 146 CPSAE 150
           C   E
Sbjct: 491 CSIQE 495


>gi|356540361|ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 153/294 (52%), Gaps = 12/294 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI GW  I   + A      M+E+G   +++ YN LL  +C+             + 
Sbjct: 219 YSILISGWGDIGDSEKAHELFQAMLEQGCPVDLLAYNNLLQALCKGG----------CVD 268

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F +M  + +EPD  ++SI +H Y  A   Q +L  L+ M+   I P V TY+ ++
Sbjct: 269 EAKTIFHDMLSKRVEPDAFTYSIFIHSYCDADDVQSALRVLDKMRRYNILPNVFTYNCII 328

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC    +E+A  LL EM+  GV P   +YN     +    + N A++L  +M++D  C
Sbjct: 329 KRLCKNEHVEEAYLLLDEMISRGVRPDTWSYNAIQAYHCDHCEVNRAIRLMFRMEKDN-C 387

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ-KWKEAC 240
           +P+ H+YN+++ + + + R D V ++W ++      P + +Y+++IHG C+K+ K +EAC
Sbjct: 388 LPDRHTYNMVLKLLIRIGRFDKVTKVWGNMGDKKFYPSVSTYSVMIHGFCKKKGKLEEAC 447

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           +YF  MI++G+ P   T E L   L+    L     L  K+ + +     E  N
Sbjct: 448 KYFEMMIDEGIPPYVTTVEMLRNQLLGLGFLDHIEILAAKMRQSTSYAIQELAN 501



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 123/261 (47%), Gaps = 14/261 (5%)

Query: 8   GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVF 67
            + + N  D A R    M E G++P +  ++ LL  +C+           K ++ A++ F
Sbjct: 156 AYSQANLPDGAIRSFNRMDEFGIKPTINDFDKLLFILCK----------TKHVKQAQQFF 205

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPT-VATYSSVVKCLCS 126
           D+ + R +     ++SI++  +      + + +    M E+G CP  +  Y+++++ LC 
Sbjct: 206 DQAKNRFLLT-AKTYSILISGWGDIGDSEKAHELFQAMLEQG-CPVDLLAYNNLLQALCK 263

Query: 127 CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH 186
            G +++A+ +  +M+   V P A TY+ F   Y    D   A+++  +M+   + +PN+ 
Sbjct: 264 GGCVDEAKTIFHDMLSKRVEPDAFTYSIFIHSYCDADDVQSALRVLDKMRRYNI-LPNVF 322

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
           +YN +I        ++    + +++   G+ PD  SY  +    C+  +   A +    M
Sbjct: 323 TYNCIIKRLCKNEHVEEAYLLLDEMISRGVRPDTWSYNAIQAYHCDHCEVNRAIRLMFRM 382

Query: 247 IEKGLLPQKVTFETLYRGLIQ 267
            +   LP + T+  + + LI+
Sbjct: 383 EKDNCLPDRHTYNMVLKLLIR 403



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 92/188 (48%), Gaps = 2/188 (1%)

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           F ++   YS+A+ P  ++   N M E GI PT+  +  ++  LC    ++ A++   +  
Sbjct: 150 FWLIFRAYSQANLPDGAIRSFNRMDEFGIKPTINDFDKLLFILCKTKHVKQAQQFFDQ-A 208

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
           +N    +A+TY+     +    D+  A +L++ M E G C  ++ +YN L+        +
Sbjct: 209 KNRFLLTAKTYSILISGWGDIGDSEKAHELFQAMLEQG-CPVDLLAYNNLLQALCKGGCV 267

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           D  + I++D+    + PD  +Y++ IH  C+    + A +   +M    +LP   T+  +
Sbjct: 268 DEAKTIFHDMLSKRVEPDAFTYSIFIHSYCDADDVQSALRVLDKMRRYNILPNVFTYNCI 327

Query: 262 YRGLIQSD 269
            + L +++
Sbjct: 328 IKRLCKNE 335


>gi|356495741|ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 147/266 (55%), Gaps = 12/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI GW +I   + A      M+E+G   +++ YN LL  +C+             + 
Sbjct: 219 YSILISGWGEIGDSEKACDLFQAMLEQGCPVDLLAYNNLLQALCKGGR----------VD 268

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F +M  + +EPD  ++SI +H Y  A   Q +   L+ M+   + P V TY+ ++
Sbjct: 269 EAKNIFHDMLSKRVEPDAFTYSIFIHSYCDADDVQSAFRVLDKMRRYNLLPNVFTYNCII 328

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC    +E+A +LL EM+  GV P   +YN     +    + N A++L  +M++D +C
Sbjct: 329 KQLCKNEHVEEAYQLLDEMISRGVKPDTWSYNAIQAYHCDHCEVNRALRLMFRMEKD-IC 387

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ-KWKEAC 240
           +P+ H+YN+++ + + + R D V E+W ++      P + +Y+++IHG C+K+ K +EAC
Sbjct: 388 LPDRHTYNMVLKLLIRIGRFDKVTEVWENMVDKKFYPSVSTYSVMIHGFCKKKGKLEEAC 447

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLI 266
           +YF  MI++G+ P   T E L   L+
Sbjct: 448 KYFEMMIDEGIPPYVTTVEMLRNRLL 473



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 123/261 (47%), Gaps = 14/261 (5%)

Query: 8   GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVF 67
            + + N  D A R    M E GV+P +   + LL  +C+R          K ++ A+++F
Sbjct: 156 AYSQANLPDGAIRSFNRMDEFGVKPTIHDLDKLLFILCKR----------KHVKQAQQLF 205

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPT-VATYSSVVKCLCS 126
            + + R       ++SI++  +      + + D    M E+G CP  +  Y+++++ LC 
Sbjct: 206 HQAKNR-FSLTAKTYSILISGWGEIGDSEKACDLFQAMLEQG-CPVDLLAYNNLLQALCK 263

Query: 127 CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH 186
            GR+++A+ +  +M+   V P A TY+ F   Y    D   A ++  +M+   L +PN+ 
Sbjct: 264 GGRVDEAKNIFHDMLSKRVEPDAFTYSIFIHSYCDADDVQSAFRVLDKMRRYNL-LPNVF 322

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
           +YN +I        ++   ++ +++   G+ PD  SY  +    C+  +   A +    M
Sbjct: 323 TYNCIIKQLCKNEHVEEAYQLLDEMISRGVKPDTWSYNAIQAYHCDHCEVNRALRLMFRM 382

Query: 247 IEKGLLPQKVTFETLYRGLIQ 267
            +   LP + T+  + + LI+
Sbjct: 383 EKDICLPDRHTYNMVLKLLIR 403



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 98/202 (48%), Gaps = 5/202 (2%)

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           F ++   YS+A+ P  ++   N M E G+ PT+     ++  LC    ++ A++L  +  
Sbjct: 150 FWLIFRAYSQANLPDGAIRSFNRMDEFGVKPTIHDLDKLLFILCKRKHVKQAQQLFHQ-A 208

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
           +N    +A+TY+     +    D+  A  L++ M E G C  ++ +YN L+       R+
Sbjct: 209 KNRFSLTAKTYSILISGWGEIGDSEKACDLFQAMLEQG-CPVDLLAYNNLLQALCKGGRV 267

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           D  + I++D+    + PD  +Y++ IH  C+    + A +   +M    LLP   T+  +
Sbjct: 268 DEAKNIFHDMLSKRVEPDAFTYSIFIHSYCDADDVQSAFRVLDKMRRYNLLPNVFTYNCI 327

Query: 262 YRGLIQSDMLRTWRRLKKKLDE 283
            + L +++ +    +L   LDE
Sbjct: 328 IKQLCKNEHVEEAYQL---LDE 346



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 14/205 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+  I+ +C  + +  A R L +M    + PNV TYN ++  +C+           + + 
Sbjct: 289 YSIFIHSYCDADDVQSAFRVLDKMRRYNLLPNVFTYNCIIKQLCK----------NEHVE 338

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSV 120
            A ++ DEM  RG++PD  S++ +   Y   H       +L F  EK IC P   TY+ V
Sbjct: 339 EAYQLLDEMISRGVKPDTWSYNAI-QAYHCDHCEVNRALRLMFRMEKDICLPDRHTYNMV 397

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK-DANGAMKLYRQMKEDG 179
           +K L   GR +   E+   MV     PS  TY+     +  +K     A K +  M ++G
Sbjct: 398 LKLLIRIGRFDKVTEVWENMVDKKFYPSVSTYSVMIHGFCKKKGKLEEACKYFEMMIDEG 457

Query: 180 LCVPNMHSYNILIGMFMALNRMDMV 204
           +  P + +  +L    + L  +D +
Sbjct: 458 I-PPYVTTVEMLRNRLLGLGFIDHI 481


>gi|125526118|gb|EAY74232.1| hypothetical protein OsI_02112 [Oryza sativa Indica Group]
          Length = 556

 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 149/276 (53%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L++GW +  R+D   +   EM   GV P VVTY  L+ G+C +       R ++ I 
Sbjct: 186 YNILLHGWSRAGRLDKVGKLWAEMRLAGVRPTVVTYGTLIEGLCVK------RRPDQAI- 238

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + DEMR  GIE ++ + + +++  ++A + Q +   L      G+ P ++T++S+V
Sbjct: 239 ---ALLDEMREEGIEANLLTCNPIVYALAQAGRFQDAHKVLEKFPLYGVAPNISTFNSLV 295

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +  A  +L  M   G+ P+  TYN FF  +    D    M  Y +M  +G  
Sbjct: 296 MGYCKHGDLAGASSVLKVMTERGISPTTRTYNYFFMTFAKNSDVESGMNFYSKMIGNGYS 355

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y +L+ M    NR+++V ++  +++  G  PDL + TMLIH LC + +++EAC 
Sbjct: 356 -PDQLTYVLLVKMLSRANRLELVVQMIQEMRTHGFEPDLATSTMLIHLLCRRHQFEEACA 414

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F +M ++G++PQ +T++ L R L +  ++R  ++L
Sbjct: 415 EFEDMFKRGIVPQYITYQKLMRELKRLGLVRLIQKL 450



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 25/164 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF-EKTI 60
           + SL+ G+CK   +  A   L  M ERG+ P   TYN       + + +     F  K I
Sbjct: 291 FNSLVMGYCKHGDLAGASSVLKVMTERGISPTTRTYNYFFMTFAKNSDVESGMNFYSKMI 350

Query: 61  RNA------------------------EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            N                          ++  EMR  G EPD+ + ++++H+  R HQ +
Sbjct: 351 GNGYSPDQLTYVLLVKMLSRANRLELVVQMIQEMRTHGFEPDLATSTMLIHLLCRRHQFE 410

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
            +  +   M ++GI P   TY  +++ L   G +   ++L   M
Sbjct: 411 EACAEFEDMFKRGIVPQYITYQKLMRELKRLGLVRLIQKLTNLM 454



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 17/170 (10%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRN-------GVCPSAETY-----NCFFKEY 159
           P +A ++ +V+     GR   A      + R+       G  P+A +      +   KE 
Sbjct: 101 PPLAAFAPLVRRYARLGRAPAALRAFQFLRRHPDRYMAGGDIPAAASLLNMAVDALCKEG 160

Query: 160 RGRKDANGAMKLY-RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218
             R     A++L+ R  +E+    P+  +YNIL+  +    R+D V ++W +++ +G+ P
Sbjct: 161 HPR----AAVELFERWRREEPDSPPDERAYNILLHGWSRAGRLDKVGKLWAEMRLAGVRP 216

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            + +Y  LI GLC K++  +A     EM E+G+    +T   +   L Q+
Sbjct: 217 TVVTYGTLIEGLCVKRRPDQAIALLDEMREEGIEANLLTCNPIVYALAQA 266



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 95/233 (40%), Gaps = 15/233 (6%)

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK-------GICPTVATY-SSVVKCLCSCG 128
           P + +F+ ++  Y+R  +   +L    F++         G  P  A+  +  V  LC  G
Sbjct: 101 PPLAAFAPLVRRYARLGRAPAALRAFQFLRRHPDRYMAGGDIPAAASLLNMAVDALCKEG 160

Query: 129 RIEDAEELLGEMVRN--GVCPSAETYNCFFKEYR--GRKDANGAMKLYRQMKEDGLCVPN 184
               A EL     R      P    YN     +   GR D  G  KL+ +M+  G+  P 
Sbjct: 161 HPRAAVELFERWRREEPDSPPDERAYNILLHGWSRAGRLDKVG--KLWAEMRLAGV-RPT 217

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y  LI       R D    + ++++  G+  +L +   +++ L +  ++++A +   
Sbjct: 218 VVTYGTLIEGLCVKRRPDQAIALLDEMREEGIEANLLTCNPIVYALAQAGRFQDAHKVLE 277

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
           +    G+ P   TF +L  G  +   L     + K + E  I+  +   NY F
Sbjct: 278 KFPLYGVAPNISTFNSLVMGYCKHGDLAGASSVLKVMTERGISPTTRTYNYFF 330


>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 142/266 (53%), Gaps = 12/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ GW  +     A +   EM ERG   +VV YN LL  +C+  +          + 
Sbjct: 195 YSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGN----------VD 244

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F EM   G+ PD  S+SI +  Y   +    +   L+ M+   + P V TY+ +V
Sbjct: 245 EAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIV 304

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC   ++++A +LL EM+  GV P   +YN     +    + N A++L  +M+++  C
Sbjct: 305 KKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKEN-C 363

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ-KWKEAC 240
           +P+ H+YN+++ M + + R D V ++W  ++  G  P   +Y +++HG C+K+ K +EAC
Sbjct: 364 MPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEERGFYPAASTYAVMVHGFCKKKGKLEEAC 423

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLI 266
           +YF  MI+ G+ P   T E L   +I
Sbjct: 424 KYFEMMIDDGIPPYSCTVELLRNRVI 449



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 129/260 (49%), Gaps = 12/260 (4%)

Query: 8   GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVF 67
            +C+ N    A R   +M + GV+  V   + LL  +C+R          K ++ A++ F
Sbjct: 132 AYCRANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKR----------KHVKQAQEFF 181

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127
           D++ V  + P+  ++SI++  +        +      M+E+G    V  Y+S+++ LC  
Sbjct: 182 DKVNVE-VMPNAKTYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKG 240

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
           G +++A +L  EM  NG+ P A +Y+ F + Y    D + A ++  +M+   L VPN+ +
Sbjct: 241 GNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNL-VPNVFT 299

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           YN ++       ++D   ++ +++   G+ PDL SY  +    C+  +  +A +    M 
Sbjct: 300 YNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRME 359

Query: 248 EKGLLPQKVTFETLYRGLIQ 267
           ++  +P + T+  + + L++
Sbjct: 360 KENCMPDRHTYNMVLKMLLR 379



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 112/239 (46%), Gaps = 5/239 (2%)

Query: 49  SLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK 108
           S H S++F   I +      E R   I P++  F ++   Y RA+ P  ++   + M + 
Sbjct: 96  SAHSSKQF-PLIWDFLSDMRETRCCEICPEI--FWLIFRAYCRANLPGDAIRAFHQMGDF 152

Query: 109 GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGA 168
           G+   V     ++  LC    ++ A+E   + V   V P+A+TY+   + +    D++ A
Sbjct: 153 GVKAGVGDVDQLLYVLCKRKHVKQAQEFF-DKVNVEVMPNAKTYSILMRGWGDVGDSSEA 211

Query: 169 MKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228
            KL+ +M+E G C  ++ +YN L+        +D   +++ ++  +GL PD  SY++ I 
Sbjct: 212 RKLFEEMRERG-CAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIR 270

Query: 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             CE      A Q    M    L+P   T+  + + L +S+ +    +L  ++ E  ++
Sbjct: 271 AYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVS 329


>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Vitis vinifera]
          Length = 624

 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 142/266 (53%), Gaps = 12/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ GW  +     A +   EM ERG   +VV YN LL  +C+  +          + 
Sbjct: 222 YSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGN----------VD 271

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F EM   G+ PD  S+SI +  Y   +    +   L+ M+   + P V TY+ +V
Sbjct: 272 EAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIV 331

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC   ++++A +LL EM+  GV P   +YN     +    + N A++L  +M+++  C
Sbjct: 332 KKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKEN-C 390

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ-KWKEAC 240
           +P+ H+YN+++ M + + R D V ++W  ++  G  P   +Y +++HG C+K+ K +EAC
Sbjct: 391 MPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEERGFYPAASTYAVMVHGFCKKKGKLEEAC 450

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLI 266
           +YF  MI+ G+ P   T E L   +I
Sbjct: 451 KYFEMMIDDGIPPYSCTVELLRNRVI 476



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 129/260 (49%), Gaps = 12/260 (4%)

Query: 8   GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVF 67
            +C+ N    A R   +M + GV+  V   + LL  +C+R          K ++ A++ F
Sbjct: 159 AYCRANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKR----------KHVKQAQEFF 208

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127
           D++ V  + P+  ++SI++  +        +      M+E+G    V  Y+S+++ LC  
Sbjct: 209 DKVNVE-VMPNAKTYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKG 267

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
           G +++A +L  EM  NG+ P A +Y+ F + Y    D + A ++  +M+   L VPN+ +
Sbjct: 268 GNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNL-VPNVFT 326

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           YN ++       ++D   ++ +++   G+ PDL SY  +    C+  +  +A +    M 
Sbjct: 327 YNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRME 386

Query: 248 EKGLLPQKVTFETLYRGLIQ 267
           ++  +P + T+  + + L++
Sbjct: 387 KENCMPDRHTYNMVLKMLLR 406



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 104/219 (47%), Gaps = 4/219 (1%)

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
           E R   I P++  F ++   Y RA+ P  ++   + M + G+   V     ++  LC   
Sbjct: 142 ETRCCEICPEI--FWLIFRAYCRANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKRK 199

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
            ++ A+E   + V   V P+A+TY+   + +    D++ A KL+ +M+E G C  ++ +Y
Sbjct: 200 HVKQAQEFF-DKVNVEVMPNAKTYSILMRGWGDVGDSSEARKLFEEMRERG-CAVDVVAY 257

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N L+        +D   +++ ++  +GL PD  SY++ I   CE      A Q    M  
Sbjct: 258 NSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRR 317

Query: 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             L+P   T+  + + L +S+ +    +L  ++ E  ++
Sbjct: 318 YNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVS 356


>gi|15219049|ref|NP_175673.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207559|sp|Q9SSR6.1|PPR78_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g52640, mitochondrial; Flags: Precursor
 gi|5903042|gb|AAD55601.1|AC008016_11 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|45773940|gb|AAS76774.1| At1g52640 [Arabidopsis thaliana]
 gi|62320530|dbj|BAD95108.1| hypothetical protein [Arabidopsis thaliana]
 gi|332194712|gb|AEE32833.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  157 bits (398), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 138/266 (51%), Gaps = 12/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ GW +I     A +   EM+ER    +++ YN LL+ +C+             + 
Sbjct: 211 YSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGD----------VD 260

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K+F EM   G++PD  SF+I +H Y  A     +   L+ MK   + P V T++ ++
Sbjct: 261 GGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHII 320

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC   +++DA  LL EM++ G  P   TYN     +    + N A KL  +M     C
Sbjct: 321 KTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTK-C 379

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ-KWKEAC 240
           +P+ H+YN+++ + + + R D   EIW  +      P + +YT++IHGL  K+ K +EAC
Sbjct: 380 LPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEAC 439

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLI 266
           +YF  MI++G+ P   T E L   L+
Sbjct: 440 RYFEMMIDEGIPPYSTTVEMLRNRLV 465



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 1/188 (0%)

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           F IV   YSRA+ P  +    N M E GI P V     ++  LC    +  A+E  G+  
Sbjct: 141 FWIVFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAK 200

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
             G+ PSA+TY+   + +   +DA+GA K++ +M E   CV ++ +YN L+        +
Sbjct: 201 GFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLERN-CVVDLLAYNALLDALCKSGDV 259

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           D   +++ ++   GL PD  S+ + IH  C+      A +    M    L+P   TF  +
Sbjct: 260 DGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHI 319

Query: 262 YRGLIQSD 269
            + L +++
Sbjct: 320 IKTLCKNE 327



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 118/260 (45%), Gaps = 11/260 (4%)

Query: 8   GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVF 67
            + + N    A R    M+E G++P V   + LL+ +C +          K + +A++ F
Sbjct: 147 AYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDK----------KHVNHAQEFF 196

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127
            + +  GI P   ++SI++  ++R      +    + M E+     +  Y++++  LC  
Sbjct: 197 GKAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKS 256

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
           G ++   ++  EM   G+ P A ++  F   Y    D + A K+  +MK   L VPN+++
Sbjct: 257 GDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDL-VPNVYT 315

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           +N +I       ++D    + +++   G  PD  +Y  ++   C+  +   A +    M 
Sbjct: 316 FNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMD 375

Query: 248 EKGLLPQKVTFETLYRGLIQ 267
               LP + T+  + + LI+
Sbjct: 376 RTKCLPDRHTYNMVLKLLIR 395



 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 26/171 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS----ERFE 57
           +  +I   CK  ++D A   L EMI++G  P+  TYN ++   C    ++ +     R +
Sbjct: 316 FNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMD 375

Query: 58  KT----------------IR-----NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH-QP 95
           +T                IR      A ++++ M  R   P V ++++++H   R   + 
Sbjct: 376 RTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKL 435

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
           + +      M ++GI P   T   +   L   G+++  + L G+M R+  C
Sbjct: 436 EEACRYFEMMIDEGIPPYSTTVEMLRNRLVGWGQMDVVDVLAGKMERSSSC 486


>gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 591

 Score =  156 bits (395), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 146/270 (54%), Gaps = 11/270 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI+G+CK  ++D A + +GE+ + G+EP+V++Y   +   CR          EK  R
Sbjct: 314 FNVLIHGYCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCR----------EKDFR 363

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N +KV  +M  +G +P+V +F+I++H   +A Q   +L     MK++G  P  + YSS++
Sbjct: 364 NVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLI 423

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+ D +E++ +M + GV P   TYN              A+ L  +M+E   C
Sbjct: 424 FILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVS-C 482

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ L+ MF    RM +++ + + +  + +  +  +Y +L+ GLCE  K   AC 
Sbjct: 483 KPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACS 542

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           +F EM+ K ++P+  TF+ L   L +  ML
Sbjct: 543 FFGEMLSKAMVPKDSTFKMLKEELERKSML 572



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 115/235 (48%), Gaps = 12/235 (5%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G+  +    NVL++ + + AS          + +A  VF E++   I  ++ SF++++H 
Sbjct: 272 GISTDTTAMNVLMDALVKEAS----------VEDAHNVFRELKC-SIPFNLASFNVLIHG 320

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           Y +A +   +   +  +++ G+ P V +Y++ ++  C      + +++L +M   G  P+
Sbjct: 321 YCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPN 380

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             T+          K  N A+K+Y +MK++G CVP+   Y+ LI +     R+  V+EI 
Sbjct: 381 VITFTIIMHALGKAKQINEALKVYEKMKKEG-CVPDSSFYSSLIFILGKAGRLTDVKEIV 439

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            D++  G+ PD+ +Y  LI   C   + + A    ++M E    P   T+  L +
Sbjct: 440 EDMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLK 494



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 97/213 (45%), Gaps = 4/213 (1%)

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           S++ ++ +  +A   +L  + ++ M       ++ T S V++ L   GR ++A      +
Sbjct: 209 SYNSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNI 268

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP-NMHSYNILIGMFMALN 199
            + G+       N              A  ++R++K     +P N+ S+N+LI  +    
Sbjct: 269 EKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELK---CSIPFNLASFNVLIHGYCKAK 325

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           ++D   +I  +V+ SGL PD+ SYT  I   C ++ ++   +  V+M  KG  P  +TF 
Sbjct: 326 KLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFT 385

Query: 260 TLYRGLIQSDMLRTWRRLKKKLDEESITFGSEF 292
            +   L ++  +    ++ +K+ +E     S F
Sbjct: 386 IIMHALGKAKQINEALKVYEKMKKEGCVPDSSF 418



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 115/246 (46%), Gaps = 10/246 (4%)

Query: 55  RFEKTIRNAEKV--FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE-KGIC 111
           R  +  R+ E +  F  +   GI  D T+ ++++    +    +   D  N  +E K   
Sbjct: 251 RLARAGRHQEAIHAFRNIEKYGISTDTTAMNVLMDALVKEASVE---DAHNVFRELKCSI 307

Query: 112 P-TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMK 170
           P  +A+++ ++   C   ++++A +++GE+ ++G+ P   +Y  F + +   KD     K
Sbjct: 308 PFNLASFNVLIHGYCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDK 367

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           +  QM+  G C PN+ ++ I++       +++   +++  +K  G  PD   Y+ LI  L
Sbjct: 368 VLVQMEHKG-CKPNVITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFIL 426

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
            +  +  +  +   +M ++G+ P  +T+ TL           T   L  K++E  ++   
Sbjct: 427 GKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEE--VSCKP 484

Query: 291 EFQNYH 296
           + + YH
Sbjct: 485 DLKTYH 490


>gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 614

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 146/270 (54%), Gaps = 11/270 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI+G+CK  ++D A + +GE+ + G+EP+V++Y   +   CR          EK  R
Sbjct: 337 FNVLIHGYCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCR----------EKDFR 386

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N +KV  +M  +G +P+V +F+I++H   +A Q   +L     MK++G  P  + YSS++
Sbjct: 387 NVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLI 446

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+ D +E++ +M + GV P   TYN              A+ L  +M+E   C
Sbjct: 447 FILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVS-C 505

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ L+ MF    RM +++ + + +  + +  +  +Y +L+ GLCE  K   AC 
Sbjct: 506 KPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACS 565

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           +F EM+ K ++P+  TF+ L   L +  ML
Sbjct: 566 FFGEMLSKAMVPKDSTFKMLKEELERKSML 595



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 115/235 (48%), Gaps = 12/235 (5%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G+  +    NVL++ + + AS          + +A  VF E++   I  ++ SF++++H 
Sbjct: 295 GISTDTTAMNVLMDALVKEAS----------VEDAHNVFRELKC-SIPFNLASFNVLIHG 343

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           Y +A +   +   +  +++ G+ P V +Y++ ++  C      + +++L +M   G  P+
Sbjct: 344 YCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPN 403

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             T+          K  N A+K+Y +MK++G CVP+   Y+ LI +     R+  V+EI 
Sbjct: 404 VITFTIIMHALGKAKQINEALKVYEKMKKEG-CVPDSSFYSSLIFILGKAGRLTDVKEIV 462

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            D++  G+ PD+ +Y  LI   C   + + A    ++M E    P   T+  L +
Sbjct: 463 EDMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLK 517



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 97/213 (45%), Gaps = 4/213 (1%)

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           S++ ++ +  +A   +L  + ++ M       ++ T S V++ L   GR ++A      +
Sbjct: 232 SYNSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNI 291

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP-NMHSYNILIGMFMALN 199
            + G+       N              A  ++R++K     +P N+ S+N+LI  +    
Sbjct: 292 EKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELK---CSIPFNLASFNVLIHGYCKAK 348

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           ++D   +I  +V+ SGL PD+ SYT  I   C ++ ++   +  V+M  KG  P  +TF 
Sbjct: 349 KLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFT 408

Query: 260 TLYRGLIQSDMLRTWRRLKKKLDEESITFGSEF 292
            +   L ++  +    ++ +K+ +E     S F
Sbjct: 409 IIMHALGKAKQINEALKVYEKMKKEGCVPDSSF 441



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 114/246 (46%), Gaps = 10/246 (4%)

Query: 55  RFEKTIRNAEKV--FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK--GI 110
           R  +  R+ E +  F  +   GI  D T+ ++++    +    +   D  N  +E    I
Sbjct: 274 RLARAGRHQEAIHAFRNIEKYGISTDTTAMNVLMDALVKEASVE---DAHNVFRELKCSI 330

Query: 111 CPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMK 170
              +A+++ ++   C   ++++A +++GE+ ++G+ P   +Y  F + +   KD     K
Sbjct: 331 PFNLASFNVLIHGYCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDK 390

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           +  QM+  G C PN+ ++ I++       +++   +++  +K  G  PD   Y+ LI  L
Sbjct: 391 VLVQMEHKG-CKPNVITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFIL 449

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
            +  +  +  +   +M ++G+ P  +T+ TL           T   L  K++E  ++   
Sbjct: 450 GKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEE--VSCKP 507

Query: 291 EFQNYH 296
           + + YH
Sbjct: 508 DLKTYH 513


>gi|255548349|ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545711|gb|EEF47215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 505

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/257 (35%), Positives = 138/257 (53%), Gaps = 14/257 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ GW    + + AE F  EM E G++P+VV+YN L++  C+          ++ + 
Sbjct: 213 FNILLSGW---KQSEEAELFFEEMRELGIKPDVVSYNSLIDVYCK----------DREME 259

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KV ++MR   I PDV +++ ++       QP  + D LN MKE G  P VA Y++V+
Sbjct: 260 KAYKVVEKMREEDISPDVITYTSIIGGLGLVGQPDKARDILNEMKEYGCYPDVAAYNAVI 319

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C   R+ DA  L+ EM   G+ P+A TYN FF+ +    D   +  LYR+M E G C
Sbjct: 320 RNYCIAKRLGDASNLMDEMASKGLSPNATTYNLFFRVFYWSNDLRNSWSLYRRMMESG-C 378

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN  S   LI +F    +++M   +WND+   G G  +    +L   LC+  K  EA +
Sbjct: 379 LPNTQSCMFLIRLFRKHEKVEMALTLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEK 438

Query: 242 YFVEMIEKGLLPQKVTF 258
            F++MIEKG  P  V+F
Sbjct: 439 CFLQMIEKGHKPSNVSF 455



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 4/177 (2%)

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
           +K   P + T++ +   L    + E+AE    EM   G+ P   +YN     Y   ++  
Sbjct: 203 KKEFKPNLQTFNIL---LSGWKQSEEAELFFEEMRELGIKPDVVSYNSLIDVYCKDREME 259

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            A K+  +M+E+ +  P++ +Y  +IG    + + D  R+I N++K  G  PD+ +Y  +
Sbjct: 260 KAYKVVEKMREEDIS-PDVITYTSIIGGLGLVGQPDKARDILNEMKEYGCYPDVAAYNAV 318

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           I   C  ++  +A     EM  KGL P   T+   +R    S+ LR    L +++ E
Sbjct: 319 IRNYCIAKRLGDASNLMDEMASKGLSPNATTYNLFFRVFYWSNDLRNSWSLYRRMME 375


>gi|115436834|ref|NP_001043148.1| Os01g0506100 [Oryza sativa Japonica Group]
 gi|56201661|dbj|BAD73125.1| leaf protein -like [Oryza sativa Japonica Group]
 gi|113532679|dbj|BAF05062.1| Os01g0506100 [Oryza sativa Japonica Group]
 gi|215717162|dbj|BAG95525.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 541

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 142/264 (53%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L++GW +  R+D   +   EM   GV P VVTY  L+ G+C +       R ++ I 
Sbjct: 186 YNILLHGWSRAGRLDKVGKLWAEMRLAGVRPTVVTYGTLIEGLCVK------RRPDQAI- 238

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + DEMR  GIE ++ + + +++  ++A + Q +   L      G+ P ++T++S+V
Sbjct: 239 ---ALLDEMREEGIEANLLTCNPIVYALAQAGRFQDAHKVLEKFPLYGVAPNISTFNSLV 295

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +  A  +L  M   G+ P+  TYN FF  +    D    M  Y +M  +G  
Sbjct: 296 MGYCKHGDLAGASSVLKVMTERGISPTTRTYNYFFMTFAKNSDVESGMNFYSKMIGNGYS 355

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y +L+ M    NR+++V ++  +++  G  PDL + TMLIH LC + +++EAC 
Sbjct: 356 -PDQLTYVLLVKMLSRANRLELVVQMIQEMRTHGFEPDLATSTMLIHLLCRRHQFEEACA 414

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F +M ++G++PQ +T++ L R L
Sbjct: 415 EFEDMFKRGIVPQYITYQKLMREL 438



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 25/164 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF-EKTI 60
           + SL+ G+CK   +  A   L  M ERG+ P   TYN       + + +     F  K I
Sbjct: 291 FNSLVMGYCKHGDLAGASSVLKVMTERGISPTTRTYNYFFMTFAKNSDVESGMNFYSKMI 350

Query: 61  RNA------------------------EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            N                          ++  EMR  G EPD+ + ++++H+  R HQ +
Sbjct: 351 GNGYSPDQLTYVLLVKMLSRANRLELVVQMIQEMRTHGFEPDLATSTMLIHLLCRRHQFE 410

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
            +  +   M ++GI P   TY  +++ L   G +   ++L   M
Sbjct: 411 EACAEFEDMFKRGIVPQYITYQKLMRELKRLGLVHLIQKLTNLM 454



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 17/170 (10%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRN-------GVCPSAETY-----NCFFKEY 159
           P +A ++ +V+     GR   A      + R+       G  P+A +      +   KE 
Sbjct: 101 PPLAAFAPLVRRYARLGRAPAALRAFQFLRRHPDRYMAGGDIPAAASLLNMAVDALCKEG 160

Query: 160 RGRKDANGAMKLY-RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218
             R     A++L+ R  +E+    P+  +YNIL+  +    R+D V ++W +++ +G+ P
Sbjct: 161 HPR----AAVELFERWRREEPDSPPDERAYNILLHGWSRAGRLDKVGKLWAEMRLAGVRP 216

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            + +Y  LI GLC K++  +A     EM E+G+    +T   +   L Q+
Sbjct: 217 TVVTYGTLIEGLCVKRRPDQAIALLDEMREEGIEANLLTCNPIVYALAQA 266



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 95/233 (40%), Gaps = 15/233 (6%)

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK-------GICPTVATY-SSVVKCLCSCG 128
           P + +F+ ++  Y+R  +   +L    F++         G  P  A+  +  V  LC  G
Sbjct: 101 PPLAAFAPLVRRYARLGRAPAALRAFQFLRRHPDRYMAGGDIPAAASLLNMAVDALCKEG 160

Query: 129 RIEDAEELLGEMVRN--GVCPSAETYNCFFKEYR--GRKDANGAMKLYRQMKEDGLCVPN 184
               A EL     R      P    YN     +   GR D  G  KL+ +M+  G+  P 
Sbjct: 161 HPRAAVELFERWRREEPDSPPDERAYNILLHGWSRAGRLDKVG--KLWAEMRLAGV-RPT 217

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y  LI       R D    + ++++  G+  +L +   +++ L +  ++++A +   
Sbjct: 218 VVTYGTLIEGLCVKRRPDQAIALLDEMREEGIEANLLTCNPIVYALAQAGRFQDAHKVLE 277

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
           +    G+ P   TF +L  G  +   L     + K + E  I+  +   NY F
Sbjct: 278 KFPLYGVAPNISTFNSLVMGYCKHGDLAGASSVLKVMTERGISPTTRTYNYFF 330


>gi|357442157|ref|XP_003591356.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480404|gb|AES61607.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 142/264 (53%), Gaps = 22/264 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ GW     ++ AE F+ EM E GVEP+VVTYN L++  C+           + I 
Sbjct: 202 FNILLSGW---KNVEDAELFVNEMKEMGVEPDVVTYNSLVDVYCK----------GREIE 248

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KVFDEMR + + PDV +++ V+       QP  + D L  MKE G+ P V  Y++ +
Sbjct: 249 KAYKVFDEMREKDLSPDVITYTSVIGGLGLVGQPDKARDVLKEMKEYGVYPDVPAYNAAI 308

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C   R+  A EL+ EMV  G+ P+A TYN FF+ +    D   +  LY++M  +G C
Sbjct: 309 RNYCIAKRLGIAFELVDEMVNKGLSPNATTYNLFFRVFYWSNDLQSSWNLYKRMMGEG-C 367

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM----LIHGLCEKQKWK 237
           +P   S   LI +F    +M+M  ++W ++   G G    SYT+    L   LC+  K  
Sbjct: 368 LPYTQSCMFLIRLFKRHEKMEMALQLWGEMVEKGFG----SYTLVSDVLFDMLCDMGKLM 423

Query: 238 EACQYFVEMIEKGLLPQKVTFETL 261
           EA + F+EMIEKG  P  V+F+ +
Sbjct: 424 EAEKCFLEMIEKGQRPSNVSFKRI 447



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 5/173 (2%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P + T++ +   L     +EDAE  + EM   GV P   TYN     Y   ++   A K+
Sbjct: 197 PNLQTFNIL---LSGWKNVEDAELFVNEMKEMGVEPDVVTYNSLVDVYCKGREIEKAYKV 253

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
           + +M+E  L  P++ +Y  +IG    + + D  R++  ++K  G+ PD+ +Y   I   C
Sbjct: 254 FDEMREKDLS-PDVITYTSVIGGLGLVGQPDKARDVLKEMKEYGVYPDVPAYNAAIRNYC 312

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS-DMLRTWRRLKKKLDE 283
             ++   A +   EM+ KGL P   T+   +R    S D+  +W   K+ + E
Sbjct: 313 IAKRLGIAFELVDEMVNKGLSPNATTYNLFFRVFYWSNDLQSSWNLYKRMMGE 365


>gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial [Vitis vinifera]
          Length = 535

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 149/282 (52%), Gaps = 11/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI+GWCK  ++D A + + EM E G  P+V++Y  ++   CR          EK  R
Sbjct: 260 FNVLIHGWCKARKMDNALKSMAEMKEHGFCPDVISYTSIVEAYCR----------EKDFR 309

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               V +EM  +G  P+V +++IV+H   +  +   +L+    MK     P  + YSS++
Sbjct: 310 KVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSSLI 369

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR++DA ++  +M + G  P   TYN              A+KL  +M+E   C
Sbjct: 370 YILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLKMEESS-C 428

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++++Y+ L+ M    NRM ++  + N +  + +  ++ +Y++L+HGLC+  K + AC 
Sbjct: 429 KPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLEVGTYSLLVHGLCKSGKLEHACL 488

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           +F EM+ KGL+P+  T + L + L +  M+    R++K + +
Sbjct: 489 FFEEMVSKGLVPKDCTHKLLLKELEKKSMVEAKERVEKLMSQ 530



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 118/249 (47%), Gaps = 15/249 (6%)

Query: 16  DMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           D  E F G  +ER GV+ + +  N L++ + +          E ++ +A  VF E +   
Sbjct: 206 DAIEAFRG--MERFGVKKDTLAMNTLMDALVK----------ENSVEHANDVFVEFK-DS 252

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           I  +  +F++++H + +A +   +L  +  MKE G CP V +Y+S+V+  C         
Sbjct: 253 ILLNPHTFNVLIHGWCKARKMDNALKSMAEMKEHGFCPDVISYTSIVEAYCREKDFRKVN 312

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
            +L EM   G  P+  TY          K+ + A+++Y +MK    CVP+   Y+ LI +
Sbjct: 313 SVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKGSS-CVPDTSFYSSLIYI 371

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                R+   R+++ D+   G  PD+ +Y  +I   C   + ++A +  ++M E    P 
Sbjct: 372 LSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLKMEESSCKPD 431

Query: 255 KVTFETLYR 263
             T+  L +
Sbjct: 432 LNTYSPLLK 440


>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Glycine max]
          Length = 564

 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 150/282 (53%), Gaps = 12/282 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTSL++GWC+   I  AE    +M   G++PNV TY+++++ +CR             I
Sbjct: 284 VYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQ----------I 333

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  VF EM   G +P+  +F+ ++ V+ +A + +  L   N MK  G      +Y+ +
Sbjct: 334 TRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFI 393

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C    +E+A ++L  MV+ GV P+A T+N  F       D NGA ++Y +MKE   
Sbjct: 394 IESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKELN- 452

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN  +YNIL+ MF      DMV ++  ++  S + P++++Y +LI   C+ + W  A 
Sbjct: 453 CQPNTLTYNILMRMFAESRSTDMVLKMKKEMDESQVEPNVNTYRILISMFCDMKHWNNAY 512

Query: 241 QYFVEMI-EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +  +EM+ EK L P    +ET+   L ++  L+    L  K+
Sbjct: 513 KLMMEMVEEKCLRPNLSVYETVLELLRKAGQLKKHEELVDKM 554



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 132/285 (46%), Gaps = 12/285 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++L+  + +      A      M + G  P++V ++++++ +C++          +   
Sbjct: 216 FSALVRRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISSLCKK----------RRAN 265

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+  FD ++ R  EPDV  ++ ++H + RA     + +  + MK  GI P V TYS V+
Sbjct: 266 EAQSFFDSLKHR-FEPDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVI 324

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC CG+I  A ++  EM+  G  P+A T+N   + +         +K+Y QMK  G C
Sbjct: 325 DSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLG-C 383

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  SYN +I        ++   +I N +   G+ P+  ++  +   + +      A +
Sbjct: 384 PADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHR 443

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            +  M E    P  +T+  L R   +S       ++KK++DE  +
Sbjct: 444 MYARMKELNCQPNTLTYNILMRMFAESRSTDMVLKMKKEMDESQV 488



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 99/234 (42%), Gaps = 35/234 (14%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG------------- 109
           A  V D M+ RG+E  V +FS ++  Y RA     ++   N M++ G             
Sbjct: 197 AWHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVIS 256

Query: 110 -IC--------------------PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
            +C                    P V  Y+S+V   C  G I  AEE+  +M   G+ P+
Sbjct: 257 SLCKKRRANEAQSFFDSLKHRFEPDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPN 316

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             TY+              A  ++ +M + G C PN  ++N L+ + +   R + V +++
Sbjct: 317 VYTYSIVIDSLCRCGQITRAHDVFSEMIDAG-CDPNAVTFNSLMRVHVKAGRTEKVLKVY 375

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
           N +K  G   D  SY  +I   C  +  +EA +    M++KG+ P   TF  ++
Sbjct: 376 NQMKRLGCPADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIF 429



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 97/210 (46%), Gaps = 6/210 (2%)

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           G       ++ +L +  +  Q  L+   ++ MK +G+  TV T+S++V+     G   +A
Sbjct: 173 GFPASPEPYNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAEA 232

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
                 M   G  P    ++        ++ AN A   +  +K      P++  Y  L+ 
Sbjct: 233 VHAFNRMEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLKHR--FEPDVVVYTSLVH 290

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
            +     +    E+++D+K +G+ P++ +Y+++I  LC   +   A   F EMI+ G  P
Sbjct: 291 GWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDP 350

Query: 254 QKVTFETLYRGLIQS----DMLRTWRRLKK 279
             VTF +L R  +++     +L+ + ++K+
Sbjct: 351 NAVTFNSLMRVHVKAGRTEKVLKVYNQMKR 380


>gi|449469288|ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 88/267 (32%), Positives = 140/267 (52%), Gaps = 14/267 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L  GW  +   + A++   EM ERG   +V+ YN LL  +C+       +R E    
Sbjct: 223 YSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCK-----GGKRDE---- 273

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F EM   G++PD  ++SI +    + +        L   K K + P V TY+ V+
Sbjct: 274 -AYKMFLEMDSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVI 332

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC    +E+A ++L EM+  GV P   +YN     +    + N A+ L ++M  D  C
Sbjct: 333 KKLCKDQNVEEAYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDK-C 391

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK--EA 239
           VP+ H+YN+++ + + + R D   E+W  +   G  P + +Y ++IHG C K+KWK  EA
Sbjct: 392 VPDKHTYNMVLKLLVRVGRFDRANEVWESMGKRGFYPSVSTYAVMIHGFC-KKKWKLEEA 450

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLI 266
           C+YF  MI++G+ P   T E L   L+
Sbjct: 451 CKYFEMMIDEGIPPYIATVELLRDRLL 477



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 114/250 (45%), Gaps = 12/250 (4%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A R    M E G+   V   + LL  +C+R          K + +A++ FD+++     P
Sbjct: 170 AIRAFNRMGEFGIRAGVDDLDKLLYTLCKR----------KHVAHAQQFFDKVK-SVFNP 218

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
            V ++SI+   +        +    + M+E+G    V  Y+S+++ LC  G+ ++A ++ 
Sbjct: 219 SVKTYSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMF 278

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            EM  NGV P A+TY+ F +      D +   ++  + K   L +PN+ +YN +I     
Sbjct: 279 LEMDSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNL-LPNVFTYNCVIKKLCK 337

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
              ++   +I +++   G+ PD  SY  +    C+  +   A      M     +P K T
Sbjct: 338 DQNVEEAYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHT 397

Query: 258 FETLYRGLIQ 267
           +  + + L++
Sbjct: 398 YNMVLKLLVR 407



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 107/234 (45%), Gaps = 9/234 (3%)

Query: 70  MRVRGIEPDVTSFSIVLHV---YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS 126
           + +R     V +  +  HV   YSRA  PQ ++   N M E GI   V     ++  LC 
Sbjct: 139 IEIRETRSSVITHELFWHVFTAYSRADLPQDAIRAFNRMGEFGIRAGVDDLDKLLYTLCK 198

Query: 127 CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH 186
              +  A++   + V++   PS +TY+   + +    D+N A K++ +M+E G C+ ++ 
Sbjct: 199 RKHVAHAQQFF-DKVKSVFNPSVKTYSILTRGWGVVGDSNNAQKVFDEMRERG-CLIDVL 256

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
           +YN L+       + D   +++ ++  +G+ PD D+Y++ I   C++       +     
Sbjct: 257 AYNSLLEALCKGGKRDEAYKMFLEMDSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERT 316

Query: 247 IEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS----EFQNYH 296
             K LLP   T+  + + L +   +    ++  ++ E  +T  +      Q YH
Sbjct: 317 KRKNLLPNVFTYNCVIKKLCKDQNVEEAYQILDEMIERGVTPDTWSYNAIQAYH 370


>gi|449484422|ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 88/267 (32%), Positives = 140/267 (52%), Gaps = 14/267 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L  GW  +   + A++   EM ERG   +V+ YN LL  +C+       +R E    
Sbjct: 223 YSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCK-----GGKRDE---- 273

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F EM   G++PD  ++SI +    + +        L   K K + P V TY+ V+
Sbjct: 274 -AYKMFLEMDSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVI 332

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC    +E+A ++L EM+  GV P   +YN     +    + N A+ L ++M  D  C
Sbjct: 333 KKLCKDQNVEEAYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDK-C 391

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK--EA 239
           VP+ H+YN+++ + + + R D   E+W  +   G  P + +Y ++IHG C K+KWK  EA
Sbjct: 392 VPDKHTYNMVLKLLVRVGRFDRANEVWESMGKRGFYPSVSTYAVMIHGFC-KKKWKLEEA 450

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLI 266
           C+YF  MI++G+ P   T E L   L+
Sbjct: 451 CKYFEMMIDEGIPPYIATVELLRDRLL 477



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 114/250 (45%), Gaps = 12/250 (4%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A R    M E G+   V   + LL  +C+R          K + +A++ FD+++     P
Sbjct: 170 AIRAFNRMGEFGIRAGVDDLDKLLYTLCKR----------KHVAHAQQFFDKVK-SVFNP 218

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
            V ++SI+   +        +    + M+E+G    V  Y+S+++ LC  G+ ++A ++ 
Sbjct: 219 SVKTYSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMF 278

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            EM  NGV P A+TY+ F +      D +   ++  + K   L +PN+ +YN +I     
Sbjct: 279 LEMDSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNL-LPNVFTYNCVIKKLCK 337

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
              ++   +I +++   G+ PD  SY  +    C+  +   A      M     +P K T
Sbjct: 338 DQNVEEAYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHT 397

Query: 258 FETLYRGLIQ 267
           +  + + L++
Sbjct: 398 YNMVLKLLVR 407



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 107/234 (45%), Gaps = 9/234 (3%)

Query: 70  MRVRGIEPDVTSFSIVLHV---YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS 126
           + +R     V +  +  HV   YSRA  PQ ++   N M E GI   V     ++  LC 
Sbjct: 139 IEIRETRSSVITHELFWHVFTAYSRADLPQDAIRAFNRMGEFGIRAGVDDLDKLLYTLCK 198

Query: 127 CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH 186
              +  A++   + V++   PS +TY+   + +    D+N A K++ +M+E G C+ ++ 
Sbjct: 199 RKHVAHAQQFF-DKVKSVFNPSVKTYSILTRGWGVVGDSNNAQKVFDEMRERG-CLIDVL 256

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
           +YN L+       + D   +++ ++  +G+ PD D+Y++ I   C++       +     
Sbjct: 257 AYNSLLEALCKGGKRDEAYKMFLEMDSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERT 316

Query: 247 IEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS----EFQNYH 296
             K LLP   T+  + + L +   +    ++  ++ E  +T  +      Q YH
Sbjct: 317 KRKNLLPNVFTYNCVIKKLCKDQNVEEAYQILDEMIERGVTPDTWSYNAIQAYH 370


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score =  153 bits (387), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 91/278 (32%), Positives = 145/278 (52%), Gaps = 12/278 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+L+ GWC+   I  AER   EM   G  PNV TY ++++ +CR             I
Sbjct: 248 VYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQ----------I 297

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  VF EM   G EP+  +F+ +L V+ +A + +  L   N MK  G  P   TY+ +
Sbjct: 298 TRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFL 357

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C  G +++A ++L  MV+ G  P+A T+N  F      +D NGA +LY +MKE   
Sbjct: 358 IESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKELK- 416

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C  N  +YNIL+ MF+     DMV ++  ++    + P++++Y +LI   C    W  A 
Sbjct: 417 CKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCVLIAMYCGMGHWNNAY 476

Query: 241 QYFVEMI-EKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           ++F EM+ EK L P    +E + + L ++  L+    L
Sbjct: 477 KFFREMVEEKCLKPSLPVYEKVLQQLRKAGQLKKHEEL 514



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 128/285 (44%), Gaps = 12/285 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ LI  + +      A      M +   +P+ + +++L++ +CR+          +   
Sbjct: 180 FSILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRK----------RRAT 229

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+  FD ++ +  EPDV  ++ ++  + RA     +      MK  G  P V TY+ V+
Sbjct: 230 EAQSFFDSLKDK-FEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVI 288

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC CG+I  A ++  EM+  G  P++ T+N   + +         +++Y QMK  G C
Sbjct: 289 DALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMG-C 347

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN LI        +D   ++ N +   G  P+  ++  L   + + +    A +
Sbjct: 348 PPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHR 407

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            + +M E       VT+  L R  + +       +LKK++DE+ +
Sbjct: 408 LYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDV 452



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 122/282 (43%), Gaps = 12/282 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I    K+   D+  + +  M  R VE ++ T+++L+    R               
Sbjct: 145 YNEMIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSILIRRYVRAG----------LAS 194

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A   F+ M     +PD  +FSI++ +  R  +   +    + +K+K   P V  Y+++V
Sbjct: 195 EAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSLKDK-FEPDVIVYTNLV 253

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G I +AE +  EM   G  P+  TY               A  ++ +M + G C
Sbjct: 254 RGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAEMLDVG-C 312

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  ++N L+ + +   R + V +++N +K  G  PD  +Y  LI   C+     EA +
Sbjct: 313 EPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHCKDGNLDEALK 372

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
               M++KG  P   TF  L+  + +   +    RL  K+ E
Sbjct: 373 VLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKE 414



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 26/169 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  LI   CK   +D A + L  M+++G  PN  T+N L   + +   ++ + R      
Sbjct: 354 YNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMK 413

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY-SRAHQP 95
                                K+     K+  EM    +EP+V ++ +++ +Y    H  
Sbjct: 414 ELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCVLIAMYCGMGHWN 473

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
                    ++EK + P++  Y  V++ L   G+++  EEL+  MV  G
Sbjct: 474 NAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAGQLKKHEELVAVMVDRG 522


>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 664

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 147/278 (52%), Gaps = 13/278 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSL+YGWC+  +I  A+  L ++ E G EP++V YN LL G  +   +          R
Sbjct: 272 FTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKM----------R 321

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  EM+     P+  SF+I++  + +  +   ++     M+  G    V TY++++
Sbjct: 322 DAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLI 381

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G  + A E+L +M++ G  PS  +Y C    +  +++    M+L  +M++ G C
Sbjct: 382 SGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIG-C 440

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+++ YN +I +   L  +     +W +++  GL P LD+Y +++HG   +    EAC 
Sbjct: 441 VPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACD 500

Query: 242 YFVEMIEKGLL--PQKVTFETLYRGLIQSDMLRTWRRL 277
           YF EM+E+GLL  PQ  T + L   L++++ L   + +
Sbjct: 501 YFKEMVERGLLSAPQYGTLKELTNALLRAEKLEMAKNM 538



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 131/265 (49%), Gaps = 11/265 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI  +CK  ++D A R   EM   G E +VVTY  L++G C+  +            
Sbjct: 342 FTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTD---------- 391

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D+M  +G +P   S+  ++  + +  + +  ++ +  M++ G  P +  Y++++
Sbjct: 392 KAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMI 451

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
           + +C  G +++A  L GEM   G+ P  +TY      +  +     A   +++M E GL 
Sbjct: 452 RLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGLL 511

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P   +   L    +   +++M + +W+ +   G   ++ ++T+ IH L      KEAC
Sbjct: 512 SAPQYGTLKELTNALLRAEKLEMAKNMWSCMTTKGCELNVSAWTIWIHALFSNGHVKEAC 571

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
            Y ++M++  L+PQ  TF  L RGL
Sbjct: 572 SYCLDMMDADLMPQPDTFAKLMRGL 596



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 131/277 (47%), Gaps = 12/277 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++  L+  +  +  +  A   L EM + G EP+   +  LL+ +C+  S          +
Sbjct: 202 VFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGS----------V 251

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  +F++MRVR   P++  F+ +L+ + R  +   +   L  +KE G  P +  Y+++
Sbjct: 252 KEAASLFEDMRVR-FNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNL 310

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +      G++ DA +LL EM +    P+A ++    + +   +  + AM+++ +M+  G 
Sbjct: 311 LGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSG- 369

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C  ++ +Y  LI  F      D   EI +D+   G  P   SY  ++    +K++ +E  
Sbjct: 370 CEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECM 429

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           +   EM + G +P    + T+ R + +   L+   RL
Sbjct: 430 ELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRL 466



 Score = 44.3 bits (103), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 15/165 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I   CK+  +  A R  GEM   G+ P + TY ++++G   +  L          
Sbjct: 446 IYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCL---------- 495

Query: 61  RNAEKVFDEMRVRGI--EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
             A   F EM  RG+   P   +   + +   RA + +++ +  + M  KG    V+ ++
Sbjct: 496 VEACDYFKEMVERGLLSAPQYGTLKELTNALLRAEKLEMAKNMWSCMTTKGCELNVSAWT 555

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163
             +  L S G +++A     +M+   + P  +T   F K  RG K
Sbjct: 556 IWIHALFSNGHVKEACSYCLDMMDADLMPQPDT---FAKLMRGLK 597



 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 72/168 (42%), Gaps = 3/168 (1%)

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR-NGVCPSAETYNCFFKEYRGRKD 164
           K+ G   +   Y +++K L    +      L+ EM + N    + E +    + +   + 
Sbjct: 156 KQPGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRM 215

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
              A+++  +M + G C P+ + +  L+        +     ++ D++     P+L  +T
Sbjct: 216 VKKAVEVLDEMPKYG-CEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVR-FNPNLRHFT 273

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
            L++G C + K  EA    V++ E G  P  V +  L  G  Q+  +R
Sbjct: 274 SLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMR 321



 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 2/172 (1%)

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
           KE     T   +  +++   S   ++ A E+L EM + G  P    + C           
Sbjct: 192 KENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSV 251

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
             A  L+  M+      PN+  +  L+  +    ++   + +   +K +G  PD+  Y  
Sbjct: 252 KEAASLFEDMRVR--FNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNN 309

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           L+ G  +  K ++A     EM +    P   +F  L +   +++ +    R+
Sbjct: 310 LLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRI 361


>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 641

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 145/272 (53%), Gaps = 13/272 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSL+YGWC+  +I  A+  L ++ E G EP++V YN LL G  +   +          R
Sbjct: 249 FTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKM----------R 298

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  EM+     P+  SF+I++  + +  +   ++     M+  G    V TY++++
Sbjct: 299 DAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLI 358

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G  + A E+L +M++ G  PS  +Y C    +  +++    M+L  +M++ G C
Sbjct: 359 SGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIG-C 417

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+++ YN +I +   L  +     +W +++  GL P LD+Y +++HG   +    EAC 
Sbjct: 418 VPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACD 477

Query: 242 YFVEMIEKGLL--PQKVTFETLYRGLIQSDML 271
           YF EM+E+GLL  PQ  T + L   L++++ L
Sbjct: 478 YFKEMVERGLLSAPQYGTLKELTNALLRAEKL 509



 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 131/265 (49%), Gaps = 11/265 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI  +CK  ++D A R   EM   G E +VVTY  L++G C+  +            
Sbjct: 319 FTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGN----------TD 368

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D+M  +G +P   S+  ++  + +  + +  ++ +  M++ G  P +  Y++++
Sbjct: 369 KAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMI 428

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
           + +C  G +++A  L GEM   G+ P  +TY      +  +     A   +++M E GL 
Sbjct: 429 RLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGLL 488

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P   +   L    +   +++M + +W+ +   G   ++ ++T+ IH L      KEAC
Sbjct: 489 SAPQYGTLKELTNALLRAEKLEMAKNMWSCMTTKGCELNVSAWTIWIHALFSNGHVKEAC 548

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
            Y ++M++  L+PQ  TF  L RGL
Sbjct: 549 SYCLDMMDADLMPQPDTFAKLMRGL 573



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 125/263 (47%), Gaps = 12/263 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++  L+  +  +  +  A   L EM + G EP+   +  LL+ +C+  S          +
Sbjct: 179 VFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGS----------V 228

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  +F++MRVR   P++  F+ +L+ + R  +   +   L  +KE G  P +  Y+++
Sbjct: 229 KEAASLFEDMRVR-FNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNL 287

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +      G++ DA +LL EM +    P+A ++    + +   +  + AM+++ +M+  G 
Sbjct: 288 LGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSG- 346

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C  ++ +Y  LI  F      D   EI +D+   G  P   SY  ++    +K++ +E  
Sbjct: 347 CEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECM 406

Query: 241 QYFVEMIEKGLLPQKVTFETLYR 263
           +   EM + G +P    + T+ R
Sbjct: 407 ELIEEMRKIGCVPDLNIYNTMIR 429



 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 15/165 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I   CK+  +  A R  GEM   G+ P + TY ++++G   +  L          
Sbjct: 423 IYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCL---------- 472

Query: 61  RNAEKVFDEMRVRGI--EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
             A   F EM  RG+   P   +   + +   RA + +++ +  + M  KG    V+ ++
Sbjct: 473 VEACDYFKEMVERGLLSAPQYGTLKELTNALLRAEKLEMAKNMWSCMTTKGCELNVSAWT 532

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163
             +  L S G +++A     +M+   + P  +T   F K  RG K
Sbjct: 533 IWIHALFSNGHVKEACSYCLDMMDADLMPQPDT---FAKLMRGLK 574



 Score = 42.0 bits (97), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 72/168 (42%), Gaps = 3/168 (1%)

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR-NGVCPSAETYNCFFKEYRGRKD 164
           K+ G   +   Y +++K L    +      L+ EM + N    + E +    + +   + 
Sbjct: 133 KQPGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRM 192

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
              A+++  +M + G C P+ + +  L+        +     ++ D++     P+L  +T
Sbjct: 193 VKKAVEVLDEMPKYG-CEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVR-FNPNLRHFT 250

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
            L++G C + K  EA    V++ E G  P  V +  L  G  Q+  +R
Sbjct: 251 SLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMR 298



 Score = 40.4 bits (93), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 2/172 (1%)

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
           KE     T   +  +++   S   ++ A E+L EM + G  P    + C           
Sbjct: 169 KENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSV 228

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
             A  L+  M+      PN+  +  L+  +    ++   + +   +K +G  PD+  Y  
Sbjct: 229 KEAASLFEDMRVR--FNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNN 286

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           L+ G  +  K ++A     EM +    P   +F  L +   +++ +    R+
Sbjct: 287 LLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRI 338


>gi|357520891|ref|XP_003630734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524756|gb|AET05210.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 520

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 141/259 (54%), Gaps = 12/259 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI GW KI     A      M+E+G   +++ YN LL  +C+   +  +  F     
Sbjct: 216 YSILINGWGKIGDSGKARELFDAMLEQGCHVDLLAYNNLLEALCKGGHVDEAMDF----- 270

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 ++M  + +EPD  ++SI +  Y  A+    +   L+ M+   + P V TY+ ++
Sbjct: 271 -----LNDMLSKKVEPDAFTYSIFIRSYCDANNVHSAFGVLDKMRRCNLLPNVFTYNCII 325

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC   ++E+A +LL EM+ +G+ P   +YN     +    + N A+KL  +M++D +C
Sbjct: 326 KRLCKIKKVEEAYQLLDEMISSGLKPDTWSYNAIQAYHCDHCEVNRALKLISRMEKD-VC 384

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ-KWKEAC 240
            P+ H+YN+++ + + + R D   E+W  +      P + +Y+++IHGLC+K+ K +EAC
Sbjct: 385 FPDRHTYNMVLKLLIRIGRFDKATEVWECMGDKKFYPSVSTYSVMIHGLCKKKGKLEEAC 444

Query: 241 QYFVEMIEKGLLPQKVTFE 259
           +YF  MI++G+ P   T E
Sbjct: 445 KYFAMMIDEGIPPYDTTIE 463



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 126/252 (50%), Gaps = 12/252 (4%)

Query: 16  DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI 75
           D A R    M E G++P+++  ++LL  +C++          K +R A++ FD+++   +
Sbjct: 161 DGAIRSFVRMDEFGIKPSIIDVDLLLYTLCKK----------KHVRQAQQFFDQVKSHFL 210

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
               T +SI+++ + +      + +  + M E+G    +  Y+++++ LC  G +++A +
Sbjct: 211 LTTKT-YSILINGWGKIGDSGKARELFDAMLEQGCHVDLLAYNNLLEALCKGGHVDEAMD 269

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
            L +M+   V P A TY+ F + Y    + + A  +  +M+   L +PN+ +YN +I   
Sbjct: 270 FLNDMLSKKVEPDAFTYSIFIRSYCDANNVHSAFGVLDKMRRCNL-LPNVFTYNCIIKRL 328

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
             + +++   ++ +++  SGL PD  SY  +    C+  +   A +    M +    P +
Sbjct: 329 CKIKKVEEAYQLLDEMISSGLKPDTWSYNAIQAYHCDHCEVNRALKLISRMEKDVCFPDR 388

Query: 256 VTFETLYRGLIQ 267
            T+  + + LI+
Sbjct: 389 HTYNMVLKLLIR 400



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 2/184 (1%)

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           F I+   YSRA  P  ++     M E GI P++     ++  LC    +  A++   + V
Sbjct: 147 FWIIFTAYSRADLPDGAIRSFVRMDEFGIKPSIIDVDLLLYTLCKKKHVRQAQQFFDQ-V 205

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
           ++    + +TY+     +    D+  A +L+  M E G C  ++ +YN L+        +
Sbjct: 206 KSHFLLTTKTYSILINGWGKIGDSGKARELFDAMLEQG-CHVDLLAYNNLLEALCKGGHV 264

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           D   +  ND+    + PD  +Y++ I   C+      A     +M    LLP   T+  +
Sbjct: 265 DEAMDFLNDMLSKKVEPDAFTYSIFIRSYCDANNVHSAFGVLDKMRRCNLLPNVFTYNCI 324

Query: 262 YRGL 265
            + L
Sbjct: 325 IKRL 328


>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
 gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 151/282 (53%), Gaps = 12/282 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+L+ GWC+   I  AER  GEM   G++PNV TY+++++ +CR             I
Sbjct: 200 VYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQ----------I 249

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F EM   G +P+  +++ ++ ++ +A + +  L   N MK  G  P   TY+ +
Sbjct: 250 TRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFL 309

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C    +EDA +++G M + G  P+A T+N  F       D N A ++Y++MKE   
Sbjct: 310 IETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKELN- 368

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C  N  +YN L+ MF+A    DMV ++  ++  + + P++++Y +LI   C    W  A 
Sbjct: 369 CEANTVTYNTLMKMFVASKSTDMVLKLKTEMDENKIEPNVNTYKVLITMYCGMGHWNNAY 428

Query: 241 QYFVEMI-EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           ++F EMI EK L P    ++ + + L ++  L+    L +K+
Sbjct: 429 KFFREMIDEKCLRPSLPVYDMVLQQLRKAGQLKKHEELVEKM 470



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 132/284 (46%), Gaps = 16/284 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++    ++   D+A  F+  M  R V+  V T+ +L+             R+ +   
Sbjct: 97  YNEMVDFSGQVMMFDVAWYFIDLMKARNVDVTVETFLILM------------RRYVRAGL 144

Query: 62  NAEKV--FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
            AE +  F+ M     +PD  +FSI++ +  R  +   + +  + +K+K   P V  Y++
Sbjct: 145 AAEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFDSLKDK-FEPDVIVYTN 203

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +V+  C  G I +AE + GEM   G+ P+  TY+              A  ++ +M + G
Sbjct: 204 LVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDIFAEMLDAG 263

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C PN  +YN L+ + +   R + V +++N +K  G  PD  +Y  LI   C+ +  ++A
Sbjct: 264 -CQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCKDENLEDA 322

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            +    M +KG  P   TF TL+  + +   +    R+ KK+ E
Sbjct: 323 IKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKE 366



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 120/265 (45%), Gaps = 12/265 (4%)

Query: 22  LGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81
              M +   +P+ + +++L++ +CR          E+    A++ FD ++ +  EPDV  
Sbjct: 152 FNRMEDYNCKPDKIAFSILISILCR----------ERRASQAQEFFDSLKDK-FEPDVIV 200

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           ++ ++  + RA     +      MK  GI P V TYS V+  LC CG+I  A ++  EM+
Sbjct: 201 YTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDIFAEML 260

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
             G  P++ TYN   + +         +++Y QMK  G C P+  +YN LI        +
Sbjct: 261 DAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLG-CEPDTVTYNFLIETHCKDENL 319

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   ++   +   G  P+  ++  L   + +      A + + +M E       VT+ TL
Sbjct: 320 EDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKELNCEANTVTYNTL 379

Query: 262 YRGLIQSDMLRTWRRLKKKLDEESI 286
            +  + S       +LK ++DE  I
Sbjct: 380 MKMFVASKSTDMVLKLKTEMDENKI 404


>gi|326500578|dbj|BAK06378.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 546

 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 148/282 (52%), Gaps = 21/282 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+ GW    R+D   +   EM   GV P VV+Y  L+  VCR     P +       
Sbjct: 194 YNMLLDGWSTARRMDKVGKLWAEMCVAGVRPTVVSYGTLIKAVCR--VQQPDQ------- 244

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + DEMR  GIE ++ + + ++H  + A + + + + L      G+ P ++T++S+V
Sbjct: 245 -AVSLLDEMRKEGIEANLVTCNPIVHALAHAGRFRDAYNLLEKFPLYGVAPNISTFNSLV 303

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +  A  +L  M+  G+ P+A+TYN FF  +    +    M LY +M  +G  
Sbjct: 304 LAYCKYGDLAGASGVLKAMMGRGILPTAKTYNYFFVFFAKTGNVELGMNLYNKMVNNGYA 363

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN+L+ M    NR+++V ++  +++ +G   DL + TMLIH LC   +++EAC 
Sbjct: 364 -PDQTTYNLLVKMLCEANRLELVVQMIKEMRANGFESDLATSTMLIHLLCRSHRFEEACA 422

Query: 242 YFVEMIEKGLLPQKVTFETLYR-----GLIQ-----SDMLRT 273
            F +M  +G +PQ +T+  L +     GL++     +D++R+
Sbjct: 423 EFKDMFRRGHVPQYITYRMLMKELKRLGLVELEEKLTDLMRS 464



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%)

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           A KL ++ + +G   P+  +YN+L+  +    RMD V ++W ++  +G+ P + SY  LI
Sbjct: 174 AAKLVKRCRREGELAPDERTYNMLLDGWSTARRMDKVGKLWAEMCVAGVRPTVVSYGTLI 233

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
             +C  Q+  +A     EM ++G+    VT   +   L  +   R    L +K 
Sbjct: 234 KAVCRVQQPDQAVSLLDEMRKEGIEANLVTCNPIVHALAHAGRFRDAYNLLEKF 287


>gi|225437663|ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Vitis vinifera]
          Length = 526

 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/257 (35%), Positives = 135/257 (52%), Gaps = 14/257 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ GW      + AE F  EM E GVEP+VV+YN L++  C+           + I 
Sbjct: 234 FNILLSGW---KSAEEAEGFFDEMREMGVEPDVVSYNCLIDVYCK----------GREIE 280

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KV D+MR   I PDV S++ ++       QP  + D L  MKE G  P VA Y++ +
Sbjct: 281 RAYKVIDKMRDEQISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDVAAYNAAI 340

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C   R+ DA+ L+ EMV  G+ P+A TYN FF+ +    D   +  LY++MK+ G C
Sbjct: 341 RNFCIANRLGDADGLMDEMVGKGLSPNATTYNLFFRCFYWSNDLGRSCGLYQRMKKTG-C 399

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN  S   L  +F    +++M  E+WND+   G G  +    +L   LC+  K  E  +
Sbjct: 400 LPNTQSCMFLTRLFRRQEKVEMALELWNDMVEKGFGSYILVSDVLFDMLCDMGKLVEVEK 459

Query: 242 YFVEMIEKGLLPQKVTF 258
             ++MIEKG  P  V+F
Sbjct: 460 CCLQMIEKGHKPSNVSF 476



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 54/253 (21%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           E +   +N LL  +C+          EK++R+A  V+  ++     PD+ +F+I+L  + 
Sbjct: 194 EFDTACFNALLRTLCQ----------EKSMRDARNVYHSLK-HDFRPDLRTFNILLSGWK 242

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
            A                                      E+AE    EM   GV P   
Sbjct: 243 SA--------------------------------------EEAEGFFDEMREMGVEPDVV 264

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           +YNC    Y   ++   A K+  +M+++ +  P++ SY  +IG    + + D  R++  +
Sbjct: 265 SYNCLIDVYCKGREIERAYKVIDKMRDEQIS-PDVISYTSIIGGLGLVGQPDKARDVLKE 323

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS-D 269
           +K  G  PD+ +Y   I   C   +  +A     EM+ KGL P   T+   +R    S D
Sbjct: 324 MKEYGCYPDVAAYNAAIRNFCIANRLGDADGLMDEMVGKGLSPNATTYNLFFRCFYWSND 383

Query: 270 MLRT---WRRLKK 279
           + R+   ++R+KK
Sbjct: 384 LGRSCGLYQRMKK 396


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 148/285 (51%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI+G    N+   A   +  M++RG +PN+VTY V++NG+C+R            I 
Sbjct: 118 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD----------ID 167

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + ++M    IE DV  F+ ++    +      +L+    M+ KGI P V TYSS++
Sbjct: 168 LAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 227

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLCS GR  DA +LL +M+   + P+  T+N     +        A KL+  M +  + 
Sbjct: 228 SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI- 286

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN LI  F   +R+D  ++++  +      PDLD+Y  LI G C+ ++ ++  +
Sbjct: 287 DPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTE 346

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F EM  +GL+   VT+ TL +GL         +++ K++  + +
Sbjct: 347 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 391



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 142/283 (50%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI   C   R   A + L +MIE+ + PN+VT+N L++   +          E    
Sbjct: 223 YSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK----------EGKFV 272

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK+ D+M  R I+PD+ +++ +++ +    +   +     FM  K   P + TY++++
Sbjct: 273 EAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLI 332

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R+ED  EL  EM   G+     TY    +      D + A K+++QM  DG+ 
Sbjct: 333 KGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV- 391

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+IL+       +++   E+++ ++ S +  D+  YT +I G+C+  K  +   
Sbjct: 392 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWD 451

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KG+ P  VT+ T+  GL    +L+    L KK+ E+
Sbjct: 452 LFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKED 494



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 138/279 (49%), Gaps = 17/279 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI  +C+ ++I +A   LG+M++ G EP++VT + LLNG C            K I 
Sbjct: 48  YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCH----------GKRIS 97

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLH---VYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           +A  + D+M   G  PD  +F+ ++H   ++++A +    +D+   M ++G  P + TY 
Sbjct: 98  DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDR---MVQRGCQPNLVTYG 154

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            VV  LC  G I+ A  LL +M    +      +N         +  + A+ L+++M+  
Sbjct: 155 VVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK 214

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  PN+ +Y+ LI    +  R     ++ +D+    + P+L ++  LI    ++ K+ E
Sbjct: 215 GI-RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 273

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A +   +MI++ + P   T+ +L  G    D L   +++
Sbjct: 274 AEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 312



 Score =  100 bits (248), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 135/300 (45%), Gaps = 18/300 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +  L+    K+ + D+    LGE ++R G+  N+ TYN+L+N  CRR+           I
Sbjct: 13  FNKLLSAIAKMKKFDLVIS-LGEKMQRLGISHNLYTYNILINCFCRRSQ----------I 61

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +  +M   G EP + + S +L+ Y    +   ++  ++ M E G  P   T++++
Sbjct: 62  SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTL 121

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L    +  +A  L+  MV+ G  P+  TY         R D + A  L  +M E   
Sbjct: 122 IHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM-EAAK 180

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              ++  +N +I        +D    ++ +++  G+ P++ +Y+ LI  LC   +W +A 
Sbjct: 181 IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDAS 240

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           Q   +MIEK + P  VTF  L    ++        +L     K+ +D +  T+ S    +
Sbjct: 241 QLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGF 300



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 99/191 (51%), Gaps = 11/191 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK  R++       EM  RG+  + VTY  L+ G+      H  +       
Sbjct: 328 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL-----FHDGD-----CD 377

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA+KVF +M   G+ PD+ ++SI+L       + + +L+  ++M++  I   +  Y++++
Sbjct: 378 NAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMI 437

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + +C  G+++D  +L   +   GV P+  TYN        ++    A  L ++MKEDG  
Sbjct: 438 EGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDG-P 496

Query: 182 VPNMHSYNILI 192
           +P+  +YN LI
Sbjct: 497 LPDSGTYNTLI 507



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 89/176 (50%), Gaps = 10/176 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G       D A++   +M+  GV P+++TY++LL+G+C    L           
Sbjct: 363 YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE---------- 412

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +VFD M+   I+ D+  ++ ++    +A +     D    +  KG+ P V TY++++
Sbjct: 413 KALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 472

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
             LCS   +++A  LL +M  +G  P + TYN   + +    D   + +L R+M+ 
Sbjct: 473 SGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 528



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 1/126 (0%)

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
           MV++   PS   +N         K  +  + L  +M+  G+   N+++YNILI  F   +
Sbjct: 1   MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGIS-HNLYTYNILINCFCRRS 59

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           ++ +   +   +   G  P + + + L++G C  ++  +A     +M+E G  P  +TF 
Sbjct: 60  QISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFT 119

Query: 260 TLYRGL 265
           TL  GL
Sbjct: 120 TLIHGL 125



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 13/120 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT++I G CK  ++D        +  +GV+PNVVTYN +++G+C +          + +
Sbjct: 432 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK----------RLL 481

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  +  +M+  G  PD  +++ ++  + R      S +    ++E   C  V   S++
Sbjct: 482 QEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAE---LIREMRSCRFVGDASTI 538


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  150 bits (380), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 148/285 (51%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI+G    N+   A   +  M++RG +PN+VTY V++NG+C+R            I 
Sbjct: 117 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD----------ID 166

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + ++M    IE DV  F+ ++    +      +L+    M+ KGI P V TYSS++
Sbjct: 167 LAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 226

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLCS GR  DA +LL +M+   + P+  T+N     +        A KL+  M +  + 
Sbjct: 227 SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI- 285

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN LI  F   +R+D  ++++  +      PDLD+Y  LI G C+ ++ ++  +
Sbjct: 286 DPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTE 345

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F EM  +GL+   VT+ TL +GL         +++ K++  + +
Sbjct: 346 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 390



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 142/283 (50%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI   C   R   A + L +MIE+ + PN+VT+N L++   +          E    
Sbjct: 222 YSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK----------EGKFV 271

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK+ D+M  R I+PD+ +++ +++ +    +   +     FM  K   P + TY++++
Sbjct: 272 EAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLI 331

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R+ED  EL  EM   G+     TY    +      D + A K+++QM  DG+ 
Sbjct: 332 KGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV- 390

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+IL+       +++   E+++ ++ S +  D+  YT +I G+C+  K  +   
Sbjct: 391 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWD 450

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KG+ P  VT+ T+  GL    +L+    L KK+ E+
Sbjct: 451 LFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKED 493



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 136/281 (48%), Gaps = 19/281 (6%)

Query: 2   YTSLIYGWCKINRIDM--AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           +  L+    K+ + D+  +   LG+M++ G EP++VT + LLNG C            K 
Sbjct: 45  FNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTLSSLLNGYCH----------GKR 94

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLH---VYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           I +A  + D+M   G  PD  +F+ ++H   ++++A +    +D+   M ++G  P + T
Sbjct: 95  ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDR---MVQRGCQPNLVT 151

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y  VV  LC  G I+ A  LL +M    +      +N         +  + A+ L+++M+
Sbjct: 152 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME 211

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G+  PN+ +Y+ LI    +  R     ++ +D+    + P+L ++  LI    ++ K+
Sbjct: 212 TKGI-RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKF 270

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            EA +   +MI++ + P   T+ +L  G    D L   +++
Sbjct: 271 VEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 311



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 99/191 (51%), Gaps = 11/191 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK  R++       EM  RG+  + VTY  L+ G+      H  +       
Sbjct: 327 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL-----FHDGD-----CD 376

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA+KVF +M   G+ PD+ ++SI+L       + + +L+  ++M++  I   +  Y++++
Sbjct: 377 NAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMI 436

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + +C  G+++D  +L   +   GV P+  TYN        ++    A  L ++MKEDG  
Sbjct: 437 EGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDG-P 495

Query: 182 VPNMHSYNILI 192
           +P+  +YN LI
Sbjct: 496 LPDSGTYNTLI 506



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 130/292 (44%), Gaps = 14/292 (4%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           W K  ++D A    G M++    P++  +N LL+ + +       ++F+  I  A  +  
Sbjct: 17  WGKDLKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKM------KKFDLVISLA--LLG 68

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
           +M   G EP + + S +L+ Y    +   ++  ++ M E G  P   T+++++  L    
Sbjct: 69  KMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN 128

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           +  +A  L+  MV+ G  P+  TY         R D + A  L  +M E      ++  +
Sbjct: 129 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM-EAAKIEADVVIF 187

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N +I        +D    ++ +++  G+ P++ +Y+ LI  LC   +W +A Q   +MIE
Sbjct: 188 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 247

Query: 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           K + P  VTF  L    ++        +L     K+ +D +  T+ S    +
Sbjct: 248 KKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGF 299



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 89/176 (50%), Gaps = 10/176 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G       D A++   +M+  GV P+++TY++LL+G+C    L           
Sbjct: 362 YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE---------- 411

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +VFD M+   I+ D+  ++ ++    +A +     D    +  KG+ P V TY++++
Sbjct: 412 KALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 471

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
             LCS   +++A  LL +M  +G  P + TYN   + +    D   + +L R+M+ 
Sbjct: 472 SGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 527



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 13/120 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT++I G CK  ++D        +  +GV+PNVVTYN +++G+C +          + +
Sbjct: 431 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK----------RLL 480

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  +  +M+  G  PD  +++ ++  + R      S + +  M+    C  V   S++
Sbjct: 481 QEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS---CRFVGDASTI 537


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  150 bits (380), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 152/301 (50%), Gaps = 30/301 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTI 60
           YT+LI G+CK  + D A R   +++ RG  P+VVTY+ L++G+C+   L  + + F + I
Sbjct: 153 YTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMI 212

Query: 61  RN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           ++                         A  + + M   G  PDV +++ +++ + +  + 
Sbjct: 213 KSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARL 272

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             + D LN M  KG+ P V T++S++  LC   R+ DA  +LGEM R    P+  TYN  
Sbjct: 273 DDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTI 332

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y     AN   +  + M E+  C PN+ S+NI+I     +NR     E+  + +   
Sbjct: 333 LDGY---CRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRR 389

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-GLLPQKVTFETLYRGLIQSDMLRTW 274
             PD+  YT +I GLC ++K  EAC+ + +M+E+ G LP  +T+ TL  GL  + ML   
Sbjct: 390 CNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRA 449

Query: 275 R 275
           R
Sbjct: 450 R 450



 Score =  144 bits (362), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 147/305 (48%), Gaps = 46/305 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI G CK+ R++ A  FLG+M+ +G  P+V TY  +++ +C    LH + +F     
Sbjct: 14  YTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKF----- 68

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 +EM  R + P+V ++++++    +  +   ++  L+ M++K + PT  TY+S++
Sbjct: 69  -----LEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLI 122

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ------- 174
             LC   R  +A +LL EMV +G  P   TY      +   K ++ A++++ Q       
Sbjct: 123 SGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR 182

Query: 175 ----------------------------MKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
                                       M + G C+PN  +YN LI  F  + +MD    
Sbjct: 183 PDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMN 242

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +   +  +G  PD+ +YT L++G C+  +  +A     +M  KGL P  VTF +L  GL 
Sbjct: 243 LLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLC 302

Query: 267 QSDML 271
           + + L
Sbjct: 303 RENRL 307



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 145/301 (48%), Gaps = 26/301 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I+  C  NR+  A +FL EM  R + PNVVTY VL++G+C+   +  +      +R
Sbjct: 49  YTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMR 108

Query: 62  N------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
                                    A  + +EM   G  PD+ +++ ++  + ++ +   
Sbjct: 109 KKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDD 168

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC-PSAETYNCFF 156
           +L     +  +G  P V TYS ++  LC  GR+++A +L G M+++G C P+  TYN   
Sbjct: 169 ALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLI 228

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +      + AM L  +M E G   P++ +Y  L+  F  L R+D   ++ N +   GL
Sbjct: 229 SGFCRMGKMDEAMNLLERMAETG-SSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL 287

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD+ ++T L+ GLC + +  +A     EM  K   P   T+ T+  G  +++ L   R+
Sbjct: 288 TPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARK 347

Query: 277 L 277
            
Sbjct: 348 F 348



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 125/251 (49%), Gaps = 18/251 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G+CK+ R+D A   L +M  +G+ P+VVT+  L++G+CR          E  + 
Sbjct: 259 YTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCR----------ENRLS 308

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP-TVATYSSV 120
           +A  +  EMR +   P V +++ +L  Y RA+Q +   +   FM E+  CP  V +++ +
Sbjct: 309 DAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLE---EARKFMLEEMDCPPNVVSFNIM 365

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++ LC   R  +A EL+ E  R    P    Y          K  + A ++YR+M E+  
Sbjct: 366 IRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPG 425

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C+PN  +Y+ L+        +D  R         G  P++ +Y +LI    +  + ++A 
Sbjct: 426 CLPNSITYSTLVTGLCNAGMLDRARGYIE----KGCVPNIGTYNLLIDAFRKANRDEDAR 481

Query: 241 QYFVEMIEKGL 251
           +   +M+++G 
Sbjct: 482 ELLDDMVQRGF 492



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 8/205 (3%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           D  +++ ++    +  + + +L  L  M  KG  P V TY++V+  LC   R+ +A + L
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            EM    + P+  TY             + A+ L  +M++   CVP   +YN LI     
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK--CVPTAVTYNSLISGLCK 127

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
             R     ++  ++  SG  PD+ +YT LI G C+ +K  +A + F +++ +G  P  VT
Sbjct: 128 AERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVT 187

Query: 258 FETLYRGLIQSDMLRTWRRLKKKLD 282
           +  L  GL +        RLK+ +D
Sbjct: 188 YSCLIDGLCKEG------RLKEAID 206



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C  +  +Y  LI     + R++        +   G  PD+ +YT +IH LC + +  EA 
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLKKKLDEESITFGS 290
           ++  EM  + L P  VT+  L  GL +     + +    +++KK    ++T+ S
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNS 120



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 59/110 (53%), Gaps = 15/110 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           MYT++I G C+  ++D A R   +M+E  G  PN +TY+ L+ G+C    L  +  + + 
Sbjct: 396 MYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYIE- 454

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG 109
                        +G  P++ ++++++  + +A++ + + + L+ M ++G
Sbjct: 455 -------------KGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRG 491


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 152/301 (50%), Gaps = 30/301 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTI 60
           YT+LI G+CK  + D A R   +++ RG  P+VVTY+ L++G+C+   L  + + F + I
Sbjct: 153 YTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMI 212

Query: 61  RN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           ++                         A  + + M   G  PDV +++ +++ + +  + 
Sbjct: 213 KSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARL 272

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             + D LN M  KG+ P V T++S++  LC   R+ DA  +LGEM R    P+  TYN  
Sbjct: 273 DDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTI 332

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y     AN   +  + M E+  C PN+ S+NI+I     +NR     E+  + +   
Sbjct: 333 LDGY---CRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRR 389

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-GLLPQKVTFETLYRGLIQSDMLRTW 274
             PD+  YT +I GLC ++K  EAC+ + +M+E+ G LP  +T+ TL  GL  + ML   
Sbjct: 390 CNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRA 449

Query: 275 R 275
           R
Sbjct: 450 R 450



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 147/305 (48%), Gaps = 46/305 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI G CK+ R++ A  FLG+M+ +G  P+V TY  +++ +C    LH + +F     
Sbjct: 14  YTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKF----- 68

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 +EM  R + P+V ++++++    +  +   ++  L+ M++K + PT  TY+S++
Sbjct: 69  -----LEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLI 122

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ------- 174
             LC   R  +A +LL EMV +G  P   TY      +   K ++ A++++ Q       
Sbjct: 123 SGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR 182

Query: 175 ----------------------------MKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
                                       M + G C+PN  +YN LI  F  + +MD    
Sbjct: 183 PDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMN 242

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +   +  +G  PD+ +YT L++G C+  +  +A     +M  KGL P  VTF +L  GL 
Sbjct: 243 LLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLC 302

Query: 267 QSDML 271
           + + L
Sbjct: 303 RENRL 307



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 145/301 (48%), Gaps = 26/301 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I+  C  NR+  A +FL EM  R + PNVVTY VL++G+C+   +  +      +R
Sbjct: 49  YTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMR 108

Query: 62  N------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
                                    A  + +EM   G  PD+ +++ ++  + ++ +   
Sbjct: 109 KKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDD 168

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC-PSAETYNCFF 156
           +L     +  +G  P V TYS ++  LC  GR+++A +L G M+++G C P+  TYN   
Sbjct: 169 ALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLI 228

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +      + AM L  +M E G   P++ +Y  L+  F  L R+D   ++ N +   GL
Sbjct: 229 SGFCRMGKMDEAMNLLERMAETG-SSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL 287

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD+ ++T L+ GLC + +  +A     EM  K   P   T+ T+  G  +++ L   R+
Sbjct: 288 TPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARK 347

Query: 277 L 277
            
Sbjct: 348 F 348



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 125/251 (49%), Gaps = 18/251 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G+CK+ R+D A   L +M  +G+ P+VVT+  L++G+CR          E  + 
Sbjct: 259 YTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCR----------ENRLS 308

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP-TVATYSSV 120
           +A  +  EMR +   P V +++ +L  Y RA+Q +   +   FM E+  CP  V +++ +
Sbjct: 309 DAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLE---EARKFMLEEMDCPPNVVSFNIM 365

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++ LC   R  +A EL+ E  R    P    Y          K  + A ++YR+M E+  
Sbjct: 366 IRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPG 425

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C+PN  +Y+ LI        +D  R         G  P++ +Y +LI    +  + ++A 
Sbjct: 426 CLPNSITYSTLITGLCNAGMLDRARGYIE----KGCVPNIGTYNLLIDAFRKANRDEDAR 481

Query: 241 QYFVEMIEKGL 251
           +   +M+++G 
Sbjct: 482 ELLDDMVQRGF 492



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 8/205 (3%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           D  +++ ++    +  + + +L  L  M  KG  P V TY++V+  LC   R+ +A + L
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            EM    + P+  TY             + A+ L  +M++   CVP   +YN LI     
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK--CVPTAVTYNSLISGLCK 127

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
             R     ++  ++  SG  PD+ +YT LI G C+ +K  +A + F +++ +G  P  VT
Sbjct: 128 AERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVT 187

Query: 258 FETLYRGLIQSDMLRTWRRLKKKLD 282
           +  L  GL +        RLK+ +D
Sbjct: 188 YSCLIDGLCKEG------RLKEAID 206



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C  +  +Y  LI     + R++        +   G  PD+ +YT +IH LC + +  EA 
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLKKKLDEESITFGS 290
           ++  EM  + L P  VT+  L  GL +     + +    +++KK    ++T+ S
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNS 120



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 59/110 (53%), Gaps = 15/110 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           MYT++I G C+  ++D A R   +M+E  G  PN +TY+ L+ G+C    L  +  + + 
Sbjct: 396 MYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYIE- 454

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG 109
                        +G  P++ ++++++  + +A++ + + + L+ M ++G
Sbjct: 455 -------------KGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRG 491


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  150 bits (379), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 147/293 (50%), Gaps = 18/293 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+CK+ R D A  FL  M  +G+EPN++T+N+++NG+CR   L          +
Sbjct: 21  YNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRL----------K 70

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +V  EM  +G  PD  +++ +++ Y +      +L     M   G+ P V TY+S++
Sbjct: 71  ETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLI 130

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G +  A E   +M   G+CP+  TY      +  +   + A ++  +M   G  
Sbjct: 131 NSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGF- 189

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +YN LI     L RM+    +  D+ G G+ PD+ SY+ +I G    Q+   A Q
Sbjct: 190 IPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQ 249

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS-------DMLRTWRRLKKKLDEESIT 287
             VEMI K +LP  VT+ +L +GL +        DM +    +K   DE + T
Sbjct: 250 MKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYT 302



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 138/282 (48%), Gaps = 16/282 (5%)

Query: 17  MAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIE 76
           M  RF  EM   G  PNVVTYN +++G C+      +  F ++          M ++G+E
Sbjct: 1   MGLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRS----------MGLKGLE 50

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           P++ +F+++++   R  + + + + L  M  KG  P   TY+++V   C  G    A  L
Sbjct: 51  PNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVL 110

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
             EMVRNG+ P+  TY           + N AM+ + QM   GLC PN  +Y  +I  F 
Sbjct: 111 HAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLC-PNERTYTTIINGFA 169

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
               +D    + N++  SG  P + +Y  LI+G C   + +EA     +M+ KG+LP  V
Sbjct: 170 QQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVV 229

Query: 257 TFETLYRGLIQSDMLRTWRRLK-----KKLDEESITFGSEFQ 293
           ++ T+  G  ++  L    ++K     K +  +++T+ S  Q
Sbjct: 230 SYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQ 271



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 123/278 (44%), Gaps = 26/278 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+ +   +D A R L EM   G  P++VTYN L+NG C         R E+ I 
Sbjct: 161 YTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLG------RMEEAI- 213

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +  +M  +G+ PDV S+S ++  ++R  +   +      M  K + P   TYSS++
Sbjct: 214 ---GLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLI 270

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC   R+ +A ++  EM+   + P   TY      Y    D N A+ L+ +M + G  
Sbjct: 271 QGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGF- 329

Query: 182 VPNMHSYNILIGMFMALNRMDMVREI---------------WNDVKGSGLGPDLDSYTML 226
           +P+  +YN+LI       R    R +               +N +  +    +  S   L
Sbjct: 330 LPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVAL 389

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           + G C K    EA Q F  MI K   P +  +  +  G
Sbjct: 390 VKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHG 427



 Score = 42.0 bits (97), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 14/151 (9%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
            +L+ G+C    +D A++    MI +  +PN   YNV+++G CR  +          +  
Sbjct: 387 VALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGN----------VLK 436

Query: 63  AEKVFDEM-RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV- 120
           A K++ EM  V  +   VT  ++V  +++     +L+    + ++   +  T A  S V 
Sbjct: 437 AYKLYKEMVHVDFVPHTVTVLALVKALFTEGMDGELNEVIGDILRSCKL--TDAELSKVL 494

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
           V+     G ++    LL EM ++G+ PS  T
Sbjct: 495 VEINQKEGNMDMVFNLLTEMAKDGLIPSTGT 525


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  150 bits (379), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 140/285 (49%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G CK+     A R L  M+++   PNV+ YN +++ +C+          ++ + 
Sbjct: 220 YGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCK----------DRQVT 269

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM  +GI PD+ +++ ++H      + +     LN M    I P V  +S+VV
Sbjct: 270 EAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVV 329

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G I  A +++  M++ GV P   TY      +  R + + A+K++  M   G C
Sbjct: 330 DALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG-C 388

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN+ SYNILI  +  + RMD    +   +   GL  D  +Y  LIHGLC   + + A  
Sbjct: 389 VPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIA 448

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F EM+  G +P  VT+  L   L ++  L     L K ++  ++
Sbjct: 449 LFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNL 493



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 120/263 (45%), Gaps = 11/263 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C + R+  A   L ++++ G +P+  T+N L+ G+C           E  I  A 
Sbjct: 153 LINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLC----------VEGKIGEAL 202

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +FD+    G +PDV ++  +++   +      ++  L  M +K   P V  Y++++  L
Sbjct: 203 HLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSL 262

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C   ++ +A  L  EM+  G+ P   TYN          +      L  +M    + +PN
Sbjct: 263 CKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKI-MPN 321

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           +  ++ ++        + +  ++ + +   G+ PD+ +YT L+ G C + +  EA + F 
Sbjct: 322 VVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFD 381

Query: 245 EMIEKGLLPQKVTFETLYRGLIQ 267
            M+ KG +P   ++  L  G  Q
Sbjct: 382 TMVHKGCVPNVRSYNILINGYCQ 404



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 106/217 (48%), Gaps = 11/217 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++++++   CK   I +A   +  MI+RGVEP+VVTY  L++G C R+ +          
Sbjct: 324 VFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEM---------- 373

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A KVFD M  +G  P+V S++I+++ Y +  +   ++  L  M  +G+     TY+++
Sbjct: 374 DEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTL 433

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  GR++ A  L  EMV +G  P   TY               AM L + ++   L
Sbjct: 434 IHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNL 493

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
              ++  YNI I        ++  R++++++   G  
Sbjct: 494 -DADILVYNIAIDGMCRAGELEAARDLFSNLSCQGFA 529



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 110/249 (44%), Gaps = 11/249 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+  C +         L EM+   + PNVV ++ +++ +C+          E  I 
Sbjct: 290 YNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCK----------EGMIA 339

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V D M  RG+EPDV +++ ++  +    +   ++   + M  KG  P V +Y+ ++
Sbjct: 340 IAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILI 399

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R++ A  LL +M   G+     TYN              A+ L+ +M   G  
Sbjct: 400 NGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQ- 458

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y IL+      + +     +   ++GS L  D+  Y + I G+C   + + A  
Sbjct: 459 IPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARD 518

Query: 242 YFVEMIEKG 250
            F  +  +G
Sbjct: 519 LFSNLSCQG 527



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 122/283 (43%), Gaps = 16/283 (5%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N +D A      M+     P+ V +  LL  + +           K       +  +M  
Sbjct: 91  NTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKM----------KHYSTVLSLSTQMDS 140

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
            GI PDV + +I+++ +    +   +   L  + + G  P   T++++++ LC  G+I +
Sbjct: 141 FGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGE 200

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A  L  + +  G  P   TY           + + A++L R M +   C PN+ +YN +I
Sbjct: 201 ALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKN-CRPNVIAYNTII 259

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                  ++     +++++   G+ PD+ +Y  LIH LC   +WK       EM+   ++
Sbjct: 260 DSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIM 319

Query: 253 PQKVTFETLYRGLIQSDMLRTWR-----RLKKKLDEESITFGS 290
           P  V F T+   L +  M+          +K+ ++ + +T+ +
Sbjct: 320 PNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTA 362


>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
 gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score =  150 bits (378), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 145/268 (54%), Gaps = 14/268 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++ GWC I R + A   L EM++RG+ PN+ +YN +L G  R   ++ +  F     
Sbjct: 208 YNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDF----- 262

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                F EM+ R  E DV +++ V+H +  A + + +    + M +KG+ P+VATY++ +
Sbjct: 263 -----FLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFI 317

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC    +++A  +  EMV  G  P++ TYN   +    R +   AM+   +MK+DG C
Sbjct: 318 QVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDG-C 376

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE--- 238
            PN+ +YN++I  F     +D   +++  +      P+LD+Y +LI  +  ++K  +   
Sbjct: 377 EPNVQTYNLVIRYFCDEGEIDKALDLFQKMTSGDCLPNLDTYNILISAMFVRKKSDDLLV 436

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           A    +EM+++G +P+K TF  +  GL+
Sbjct: 437 AGNLLIEMVDRGFVPRKFTFNRVLNGLL 464



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 2/203 (0%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A KVF  M   G   D+ SF+ +L V  ++ + +++ +     K K     V +Y+ +V 
Sbjct: 155 AVKVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLFKVFKGKFRADCV-SYNVMVN 213

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C   R   A E+L EMV+ G+ P+  +YN   K Y      N A   + +MK+   C 
Sbjct: 214 GWCLIKRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRD-CE 272

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
            ++ +Y  +I  F     +   R++++ +   G+ P + +Y   I  LC+K     A   
Sbjct: 273 IDVITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVI 332

Query: 243 FVEMIEKGLLPQKVTFETLYRGL 265
           F EM+ KG +P  +T+  + RGL
Sbjct: 333 FEEMVVKGYVPNSITYNLVIRGL 355



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 108/230 (46%), Gaps = 12/230 (5%)

Query: 49  SLHPSERFEKTIRNAEKVFDE---------MRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
           S HPS  ++  I  + ++ D          MR   + P   +F+I+   Y+ A +P  ++
Sbjct: 98  SHHPSS-YDHAIDISARLRDSPSLRSLVYRMRSARLGPTPKTFAIIAERYASAGKPHRAV 156

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
                M + G    + ++++++  LC   R+E A  L  ++ +        +YN     +
Sbjct: 157 KVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLF-KVFKGKFRADCVSYNVMVNGW 215

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
              K  N A+++ ++M + GL  PN+ SYN ++  +    +++   + + ++K      D
Sbjct: 216 CLIKRTNKALEMLKEMVKRGL-TPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEID 274

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           + +YT +IHG     + K A + F  M++KG+LP   T+    + L + D
Sbjct: 275 VITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKD 324


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 140/285 (49%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G CK+     A R L  M+++   PNV+ YN +++ +C+          ++ + 
Sbjct: 258 YGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCK----------DRQVT 307

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM  +GI PD+ +++ ++H      + +     LN M    I P V  +S+VV
Sbjct: 308 EAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVV 367

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G I  A +++  M++ GV P   TY      +  R + + A+K++  M   G C
Sbjct: 368 DALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG-C 426

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN+ SYNILI  +  + RMD    +   +   GL  D  +Y  LIHGLC   + + A  
Sbjct: 427 VPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIA 486

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F EM+  G +P  VT+  L   L ++  L     L K ++  ++
Sbjct: 487 LFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNL 531



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 138/269 (51%), Gaps = 11/269 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++++++   CK   I +A   +  MI+RGVEP+VVTY  L++G C R+ +          
Sbjct: 362 VFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMD--------- 412

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A KVFD M  +G  P+V S++I+++ Y +  +   ++  L  M  +G+     TY+++
Sbjct: 413 -EAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTL 471

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  GR++ A  L  EMV +G  P   TY               AM L + ++   L
Sbjct: 472 IHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNL 531

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              ++  YNI I        ++  R++++++   GL PD+ +Y ++IHGLC++    EA 
Sbjct: 532 -DADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEAN 590

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           + F +M E G       + T+ RG ++S+
Sbjct: 591 KLFRKMDENGCSRDGCIYNTIIRGFLRSN 619



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 127/282 (45%), Gaps = 11/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+  C +         L EM+   + PNVV ++ +++ +C+          E  I 
Sbjct: 328 YNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCK----------EGMIA 377

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V D M  RG+EPDV +++ ++  +    +   ++   + M  KG  P V +Y+ ++
Sbjct: 378 IAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILI 437

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R++ A  LL +M   G+     TYN              A+ L+ +M   G  
Sbjct: 438 NGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQ- 496

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y IL+      + +     +   ++GS L  D+  Y + I G+C   + + A  
Sbjct: 497 IPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARD 556

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            F  +  KGL P   T+  +  GL +  +L    +L +K+DE
Sbjct: 557 LFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDE 598



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 120/263 (45%), Gaps = 11/263 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C + R+  A   L ++++ G +P+  T+N L+ G+C           E  I  A 
Sbjct: 191 LINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLC----------VEGKIGEAL 240

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +FD+    G +PDV ++  +++   +      ++  L  M +K   P V  Y++++  L
Sbjct: 241 HLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSL 300

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C   ++ +A  L  EM+  G+ P   TYN          +      L  +M    + +PN
Sbjct: 301 CKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKI-MPN 359

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           +  ++ ++        + +  ++ + +   G+ PD+ +YT L+ G C + +  EA + F 
Sbjct: 360 VVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFD 419

Query: 245 EMIEKGLLPQKVTFETLYRGLIQ 267
            M+ KG +P   ++  L  G  Q
Sbjct: 420 TMVHKGCVPNVRSYNILINGYCQ 442



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 112/259 (43%), Gaps = 11/259 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N +D A      M+     P+ V +  LL  + +           K       +  +M  
Sbjct: 129 NTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKM----------KHYSTVLSLSTQMDS 178

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
            GI PDV + +I+++ +    +   +   L  + + G  P   T++++++ LC  G+I +
Sbjct: 179 FGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGE 238

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A  L  + +  G  P   TY           + + A++L R M +   C PN+ +YN +I
Sbjct: 239 ALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKN-CRPNVIAYNTII 297

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                  ++     +++++   G+ PD+ +Y  LIH LC   +WK       EM+   ++
Sbjct: 298 DSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIM 357

Query: 253 PQKVTFETLYRGLIQSDML 271
           P  V F T+   L +  M+
Sbjct: 358 PNVVVFSTVVDALCKEGMI 376



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 86/178 (48%), Gaps = 10/178 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G C + R+  A     EM+  G  P++VTY +LL+ +C+   L  +    K I 
Sbjct: 468 YNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIE 527

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            +           ++ D+  ++I +    RA + + + D  + +  KG+ P V TY+ ++
Sbjct: 528 GSN----------LDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMI 577

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
             LC  G +++A +L  +M  NG       YN   + +    +  GA +L ++M  +G
Sbjct: 578 HGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEG 635


>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 461

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 144/281 (51%), Gaps = 12/281 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ GW K   +  A     EM+E G +P+VVTY ++++ +C+             + 
Sbjct: 184 YSILLEGWGKAPNLPRAREVFREMVEAGCDPDVVTYGIMVDVLCKAGR----------VD 233

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V  EM V    P    +S+++H Y   H+ + ++D    M +KGI   V  Y++++
Sbjct: 234 EAVEVVKEMDVGNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKKGIKADVVAYNALI 293

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   + ++   +L EM  NGV P++ T N       G+   + A +++ +M +  LC
Sbjct: 294 GAFCKVNKFKNVHRVLKEMESNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRMIK--LC 351

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y ++I MF   N ++M  +IW  +K     P + +++ LI GLCEK    +AC 
Sbjct: 352 EPDADTYTMMIKMFCEKNELEMALKIWKYMKSKQFVPSMHTFSALIKGLCEKDNAAKACV 411

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
              EMIEKG+ P ++TF  L + LI+       + L +K++
Sbjct: 412 VMEEMIEKGIRPSRITFGRLRQLLIKEGREDVLKFLHEKMN 452



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 131/295 (44%), Gaps = 46/295 (15%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           + + N++D A      M +  V PN+  +N LL+ +C+             +R A+++FD
Sbjct: 122 YARANKVDEAVYTFNVMDKYDVVPNLAAFNGLLSALCK----------SNNVRKAQEIFD 171

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
            M+ + + PD  S+SI+L  + +A     + +    M E G  P V TY  +V  LC  G
Sbjct: 172 AMKGQFV-PDEKSYSILLEGWGKAPNLPRAREVFREMVEAGCDPDVVTYGIMVDVLCKAG 230

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           R+++A E++ EM      P++  Y+     Y        A+  + +M + G+   ++ +Y
Sbjct: 231 RVDEAVEVVKEMDVGNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKKGI-KADVVAY 289

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLG------------------------------- 217
           N LIG F  +N+   V  +  +++ +G+                                
Sbjct: 290 NALIGAFCKVNKFKNVHRVLKEMESNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRMIK 349

Query: 218 ---PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              PD D+YTM+I   CEK + + A + +  M  K  +P   TF  L +GL + D
Sbjct: 350 LCEPDADTYTMMIKMFCEKNELEMALKIWKYMKSKQFVPSMHTFSALIKGLCEKD 404



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 127/271 (46%), Gaps = 19/271 (7%)

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD---EMRVRGIEPDVTSFS 83
           +RG   ++  Y++++  + +             IR  + V+D    MR +G+  +V +F 
Sbjct: 71  QRGYSHSIRAYHLMIESLAK-------------IRQYQIVWDLVSAMRKKGM-LNVETFC 116

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
           I++  Y+RA++   ++   N M +  + P +A ++ ++  LC    +  A+E+   M + 
Sbjct: 117 IMMRKYARANKVDEAVYTFNVMDKYDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAM-KG 175

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
              P  ++Y+   + +    +   A +++R+M E G C P++ +Y I++ +     R+D 
Sbjct: 176 QFVPDEKSYSILLEGWGKAPNLPRAREVFREMVEAG-CDPDVVTYGIMVDVLCKAGRVDE 234

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             E+  ++      P    Y++L+H    + + ++A   F+EM +KG+    V +  L  
Sbjct: 235 AVEVVKEMDVGNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKKGIKADVVAYNALIG 294

Query: 264 GLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
              + +  +   R+ K+++   +   S   N
Sbjct: 295 AFCKVNKFKNVHRVLKEMESNGVAPNSRTCN 325



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 84/177 (47%), Gaps = 26/177 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+ L++ +   +RI+ A     EM ++G++ +VV YN L+   C+        R  K +
Sbjct: 253 IYSVLVHTYGVEHRIEDAIDTFLEMAKKGIKADVVAYNALIGAFCKVNKFKNVHRVLKEM 312

Query: 61  RN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
            +                         A +VF  M ++  EPD  ++++++ ++   ++ 
Sbjct: 313 ESNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRM-IKLCEPDADTYTMMIKMFCEKNEL 371

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
           +++L    +MK K   P++ T+S+++K LC       A  ++ EM+  G+ PS  T+
Sbjct: 372 EMALKIWKYMKSKQFVPSMHTFSALIKGLCEKDNAAKACVVMEEMIEKGIRPSRITF 428


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 149/266 (56%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+  +C+   +D AER +G M E GV P++VT+N ++NG+C+      + R E    
Sbjct: 193 YNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCK------AGRME---- 242

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+FDEM   G+ PD  S++ ++  Y +A     +L     M +KG+ P V T++S++
Sbjct: 243 DARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLI 302

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G +E A  L+G+M   G+  +  T+      +      + A+   ++M+E  + 
Sbjct: 303 HAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRI- 361

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YN+LI  +  L RMD  RE+ ++++  G+ PD+ +Y+ ++ G C+      A +
Sbjct: 362 QPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFE 421

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +M++KG++P  +T+ +L RGL +
Sbjct: 422 LNRKMLKKGVVPDAITYSSLIRGLCE 447



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 132/283 (46%), Gaps = 15/283 (5%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A R L  M+  GV PNV TYN+L+  +C R      +R E        V D+MR  G  P
Sbjct: 138 ARRLLASMLRDGVAPNVYTYNILVRALCARG-----QREEAL----GVVGDDMRGAGCAP 188

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           +V +++ ++  + RA +   +   +  M+E G+ P++ T+++VV  LC  GR+EDA ++ 
Sbjct: 189 NVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMF 248

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            EM R G+ P   +YN     Y      + A+ ++ +M + G+ VP++ ++  LI     
Sbjct: 249 DEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGV-VPDVVTFTSLIHAMCR 307

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
              ++    +   ++  GL  +  ++T LI G C      +A     EM E  + P  V 
Sbjct: 308 AGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVC 367

Query: 258 FETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           +  L  G  +   +   R L      K +  + +T+ +    Y
Sbjct: 368 YNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGY 410



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 131/260 (50%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSLI+  C+   ++ A   +G+M ERG+  N  T+  L++G CR   L           
Sbjct: 298 FTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLD---------- 347

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A     EMR   I+P V  ++++++ Y +  +   + + ++ M+ KG+ P V TYS+++
Sbjct: 348 DALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTIL 407

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G  + A EL  +M++ GV P A TY+   +     +    A +L+ +M + GL 
Sbjct: 408 SGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGL- 466

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y  LI        +     + +++   G+ PD+ +Y++LI GL +  + KEA +
Sbjct: 467 QPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQR 526

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              ++  +  +P  + +E L
Sbjct: 527 LLFKLYYEDPVPDNIKYEAL 546



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 132/274 (48%), Gaps = 19/274 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G+C+   +D A   + EM E  ++P+VV YNVL+NG C+   +           
Sbjct: 333 FTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMD---------- 382

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++  EM  +G++PDV ++S +L  Y +      + +    M +KG+ P   TYSS++
Sbjct: 383 EARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLI 442

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC   R+ DA EL  +M++ G+ P   TY      +    +   A+ L+ +M + G+ 
Sbjct: 443 RGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGV- 501

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y++LI       R    + +   +      PD   Y  L+H  C   ++K    
Sbjct: 502 LPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMH-CCRTAEFKSVVA 560

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
                  KGL+ Q    + +Y    QS + R W+
Sbjct: 561 LLKGFSMKGLMNQA---DKVY----QSMLDRHWK 587



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 1/163 (0%)

Query: 109 GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGA 168
           G  P++  Y++V+  L S   +  A  LL  M+R+GV P+  TYN   +    R     A
Sbjct: 115 GYAPSLLAYNAVLLAL-SDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEA 173

Query: 169 MKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228
           + +         C PN+ +YN L+  F     +D    +   ++  G+ P L ++  +++
Sbjct: 174 LGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVN 233

Query: 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           GLC+  + ++A + F EM  +GL P  V++ TL  G  ++  L
Sbjct: 234 GLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCL 276



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 40/190 (21%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           YT+LI G CK   +  A     EMI++GV P+VVTY+VL++G+ + A    ++R      
Sbjct: 473 YTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLY 532

Query: 57  -----------------------------------EKTIRNAEKVFDEMRVRGIEPDVTS 81
                                              +  +  A+KV+  M  R  + D + 
Sbjct: 533 YEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSV 592

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           +S+++H + R      +L     +   G  P   +  S+V+ L   G   +A+ ++ E++
Sbjct: 593 YSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQELL 652

Query: 142 RNGVCPSAET 151
                  AET
Sbjct: 653 NCCSLADAET 662


>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 537

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 151/287 (52%), Gaps = 12/287 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+L+ GWC+   I  AE+   +M   G+EPNV TY+++++ +CR             I
Sbjct: 257 VYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQ----------I 306

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  VF +M   G  P+  +F+ ++ V+ +A +P+  L   N MK+ G  P   TY+ +
Sbjct: 307 SRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFL 366

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C    +E+A ++L  M++     +A T+N  F+    ++D NGA ++Y +M E   
Sbjct: 367 IETHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMME-AK 425

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN  +YNIL+ MF      DMV ++  D+    + P++++Y +L+   C    W  A 
Sbjct: 426 CEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVEPNVNTYRLLVTMFCGMGHWNNAY 485

Query: 241 QYFVEMI-EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           + F EM+ EK L P    +E +   L ++  L+    L +K+ ++ +
Sbjct: 486 KLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKGL 532



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 130/285 (45%), Gaps = 12/285 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI  + +      A      M + G  P+ + ++++++ + R+          +   
Sbjct: 189 FTILIRRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSIVISNLSRK----------RRAS 238

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+  FD ++ R  EPDV  ++ ++  + RA +   +      MK  GI P V TYS V+
Sbjct: 239 EAQSFFDSLKDR-FEPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVI 297

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC CG+I  A ++  +M+ +G  P+A T+N   + +         +++Y QMK+ G C
Sbjct: 298 DALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLG-C 356

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN LI        ++   ++ N +       +  ++  +   + +K+    A +
Sbjct: 357 EPDTITYNFLIETHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHR 416

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            + +M+E    P  VT+  L R    S       ++KK +D++ +
Sbjct: 417 MYSKMMEAKCEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEV 461


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 144/286 (50%), Gaps = 13/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I G CK     MA + L +M E+G +PN+V Y  +++ +C+          +  + 
Sbjct: 200 YSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCK----------DTLVN 249

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVY-SRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           +A  +  EM  RGI PDV ++S +LH + S  H  + ++   N M  + + P   T++ +
Sbjct: 250 DAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATI-LFNEMVGRNVMPNTVTFTIL 308

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  LC  G + +A  +   M + G  P+A TYN     Y      + A K+   M + G 
Sbjct: 309 VDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKG- 367

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P +HSYNILI  +    R+D  + +  ++    L PD  +Y+ L+ GLC+  + +EA 
Sbjct: 368 CAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEAL 427

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             F EM   GLLP  +T+ TL  GL +   L    +L K + E  I
Sbjct: 428 NLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKI 473



 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 145/297 (48%), Gaps = 44/297 (14%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI   C++N +  A   LG+M + G++P+ +T+N L+NG C           E  I+ A 
Sbjct: 133 LINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRC----------IEGEIKEAV 182

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +F+EM  RG +PDV S+S V++   ++    ++L  L  M+EKG  P +  Y++++  L
Sbjct: 183 GLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSL 242

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE------- 177
           C    + DA +LL EMV  G+ P   TY+     +      N A  L+ +M         
Sbjct: 243 CKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNT 302

Query: 178 -------DGLCV--------------------PNMHSYNILIGMFMALNRMDMVREIWND 210
                  DGLC                     PN ++YN L+  +   N+MD  +++ + 
Sbjct: 303 VTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDI 362

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           +   G  P + SY +LI+G C++++  EA    VEM EK L P  VT+ TL +GL Q
Sbjct: 363 MVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQ 419



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 161/318 (50%), Gaps = 33/318 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSE-RFEKTI 60
           Y+++++G+C +  ++ A     EM+ R V PN VT+ +L++G+C+   +  +   FE   
Sbjct: 270 YSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMT 329

Query: 61  RN------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +                         A+KV D M  +G  P V S++I+++ Y +  +  
Sbjct: 330 KKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLD 389

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L  M EK + P   TYS++++ LC  GR ++A  L  EM  +G+ P   TY+   
Sbjct: 390 EAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLL 449

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSG 215
                    + A+KL + M+E  +  P++  YNILI GMF+A  ++++ +E+++ +   G
Sbjct: 450 DGLCKHGHLDEALKLLKSMQESKI-EPDIVLYNILIEGMFIA-GKLEVAKELFSKLFADG 507

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           + P + +YT++I GL ++    EA + F +M + G LP   ++  + +G +Q+    T  
Sbjct: 508 IQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAI 567

Query: 276 RL-----KKKLDEESITF 288
           RL      K+   +S TF
Sbjct: 568 RLIDEMVGKRFSADSSTF 585



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 128/260 (49%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G+C  N++D A++ L  M+++G  P V +YN+L+NG C+R          + + 
Sbjct: 340 YNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKR----------RRLD 389

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +  EM  + + PD  ++S ++    +  +PQ +L+    M   G+ P + TYS+++
Sbjct: 390 EAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLL 449

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +++A +LL  M  + + P    YN   +          A +L+ ++  DG+ 
Sbjct: 450 DGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGI- 508

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +Y I+I   +     D   E++  ++  G  P+  SY ++I G  + Q    A +
Sbjct: 509 QPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIR 568

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              EM+ K       TF+ L
Sbjct: 569 LIDEMVGKRFSADSSTFQML 588



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 116/226 (51%), Gaps = 11/226 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CK  R+D A+  L EM E+ + P+ VTY+ L+ G+C+     P E       
Sbjct: 375 YNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVG--RPQE------- 425

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM   G+ PD+ ++S +L    +      +L  L  M+E  I P +  Y+ ++
Sbjct: 426 -ALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILI 484

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + +   G++E A+EL  ++  +G+ P+  TY    K       ++ A +L+R+M++DG  
Sbjct: 485 EGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGF- 543

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           +PN  SYN++I  F+          + +++ G     D  ++ ML+
Sbjct: 544 LPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLL 589



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 122/261 (46%), Gaps = 11/261 (4%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           ID A      M+     P+VV +   L  + ++          K       + ++M + G
Sbjct: 73  IDDALASFYRMLRMNPRPSVVEFGRFLGSIAKK----------KQYSTVVSLCNQMDLFG 122

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           +  +V S +I+++   R +    ++  L  M + GI P   T+++++   C  G I++A 
Sbjct: 123 VTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAV 182

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
            L  EMVR G  P   +Y+          + + A++L R+M+E G C PN+ +Y  +I  
Sbjct: 183 GLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKG-CKPNLVAYTTIIDS 241

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                 ++   ++ +++   G+ PD+ +Y+ ++HG C      EA   F EM+ + ++P 
Sbjct: 242 LCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPN 301

Query: 255 KVTFETLYRGLIQSDMLRTWR 275
            VTF  L  GL +  M+   R
Sbjct: 302 TVTFTILVDGLCKEGMVSEAR 322



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 1/155 (0%)

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           I+DA      M+R    PS   +  F      +K  +  + L  QM   G+   N++S N
Sbjct: 73  IDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGV-THNVYSLN 131

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
           ILI     LN +     +   +   G+ PD  ++  LI+G C + + KEA   F EM+ +
Sbjct: 132 ILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRR 191

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
           G  P  +++ T+  GL +S       +L +K++E+
Sbjct: 192 GHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEK 226


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 157/311 (50%), Gaps = 26/311 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y+S+I+G C   R + A+    EM++ GV PNVVT+NVL++ +C+   +  +        
Sbjct: 276 YSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMI 335

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  I +A  +F  M  +GIE D  S++++++ Y ++ +  
Sbjct: 336 QRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMV 395

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      M  K I PTV TY++++  L   G++ DA  L GEM  + + P + TYN   
Sbjct: 396 EAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILL 455

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + AM+L+  ++      P++  +N LI       ++++ RE++N +   GL
Sbjct: 456 DGLCKNNHLSEAMELFHYLENHDF-QPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGL 514

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P++ +YT++IHGLC+  + + A   F+ M EKG  P  VTF TL RG  Q+D ++    
Sbjct: 515 EPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVE 574

Query: 277 LKKKLDEESIT 287
           L +++ E+  +
Sbjct: 575 LLQEMAEKDFS 585



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 137/274 (50%), Gaps = 11/274 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSL+ G C  +RI  A   L +M+  G  PNVVTY  LLNG+C   +   + +  + + 
Sbjct: 165 FTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEML 224

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N    F       I+P++  +  ++    +        +    MK +GI P V  YSS++
Sbjct: 225 NGNGGFGVT----IKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSII 280

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGR-KDANGAMKLYRQMKED 178
             +C  GR E A+ L  EMV  GV P+  T+N         G+ ++AN  +KL  Q  E 
Sbjct: 281 HGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGES 340

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
               P+  +YN LI  F    R+D  R+++  ++  G+  D  SY +LI+G C+  +  E
Sbjct: 341 ----PDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVE 396

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
           A + + EM+ K ++P  +T+ TL  GL +   +R
Sbjct: 397 AKKLYREMMCKEIMPTVITYNTLLTGLFREGKVR 430



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 132/277 (47%), Gaps = 17/277 (6%)

Query: 10  CKINRIDMAERF--LGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVF 67
           CK   I  +E F     +I+    P + ++N LL  V +       +R+   I     ++
Sbjct: 66  CKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAK------IKRYFDVI----SLY 115

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127
             M + G+ PD  + +I+++ Y   ++    L  L  M  +G  P   T++S+VK LC  
Sbjct: 116 KRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLG 175

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM--KEDGLCV--- 182
            RI +A  LL +MVR G  P+  TY           +   A+KL+ +M     G  V   
Sbjct: 176 SRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIK 235

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN+  Y  +I        +D  +E++ ++KG G+ PD+ +Y+ +IHG+C   +W+ A   
Sbjct: 236 PNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGL 295

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
           F EM+++G+ P  VTF  L   L ++  +     L K
Sbjct: 296 FNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLK 332



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 75/150 (50%), Gaps = 10/150 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+ G CK N +  A      +     +P++  +N L++G+C+           + I 
Sbjct: 451 YNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCK----------ARKIE 500

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F+ +   G+EP+V ++++++H   ++ Q + + D    M+EKG  P + T+++++
Sbjct: 501 IARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLM 560

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
           +  C    ++   ELL EM      P A T
Sbjct: 561 RGFCQNDEMQKVVELLQEMAEKDFSPDAST 590



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 10/124 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++  LI G CK  +I++A      +   G+EPNV+TY V+++G+C+   L          
Sbjct: 485 IFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQL---------- 534

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            NA+ +F  M  +G  P++ +F+ ++  + +  + Q  ++ L  M EK   P  +T S V
Sbjct: 535 ENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIV 594

Query: 121 VKCL 124
           V  L
Sbjct: 595 VDLL 598



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 44/100 (44%)

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + S+N L+G    + R   V  ++  +   GL PD  +  +LI+  C   K      
Sbjct: 89  TPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLA 148

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
              EM+ +G  P  VTF +L +GL     +     L +K+
Sbjct: 149 VLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKM 188


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 143/288 (49%), Gaps = 11/288 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI   C   R+  A   L +M+ RG +PNVVTY VLL  +CR +       FE+   
Sbjct: 146 YTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSG------FEQ--- 196

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V DEMR +G  P++ +++++++   R  +   + + LN +   G  P   +Y++++
Sbjct: 197 -AMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLL 255

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC+  R +D EEL  EM+     P+  T++   + +        A+++  QM E G C
Sbjct: 256 KGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHG-C 314

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N    NI+I       R+D   ++ ND+   G  PD  SYT ++ GLC  ++W +A +
Sbjct: 315 ATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKE 374

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
              EM+     P +VTF T    L Q  ++     L +++ E   T G
Sbjct: 375 LLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVG 422



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 123/266 (46%), Gaps = 14/266 (5%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G  P+V     L+  +CRR     + R    +R AE         G   DV +++ ++  
Sbjct: 71  GEAPDVYLCTKLIRNLCRRGRTSDAAR---VLRAAEG-------SGSPVDVFAYNTLVAG 120

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           Y R      +   +  M    + P   TY+ +++ LC  GR+ DA  LL +M+R G  P+
Sbjct: 121 YCRYGHLDAARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPN 177

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             TY    +          AM +  +M+  G C PN+ +YN++I       R+D  RE+ 
Sbjct: 178 VVTYTVLLEAMCRNSGFEQAMAVLDEMRAKG-CTPNIVTYNVIINGMCREGRVDDARELL 236

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           N +   G  PD  SYT L+ GLC  ++W +  + F EM+EK  +P +VTF+ L R   + 
Sbjct: 237 NRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRG 296

Query: 269 DMLRTWRRLKKKLDEESITFGSEFQN 294
            M+    ++ +++ E      +   N
Sbjct: 297 GMVERAIQVLEQMTEHGCATNTTLCN 322



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 138/319 (43%), Gaps = 34/319 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           YT+L+ G C   R D  E    EM+E+   PN VT+++L+   CR   +  + +      
Sbjct: 251 YTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMT 310

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +  + +A K+ ++M   G  PD  S++ VL    RA +  
Sbjct: 311 EHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWD 370

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + + LN M      P   T+++ +  LC  G IE A  L+ +M  +G      TYN   
Sbjct: 371 DAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALV 430

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +  +   + A++L+R M     C PN  +Y  L+       R+D   E+  ++     
Sbjct: 431 NGFCVQGHIDSALELFRSMP----CKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDC 486

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLR 272
            P++ ++ +L+   C+K   +EA +   +M+E G  P  +T+ TL  G+ +     D L 
Sbjct: 487 PPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALE 546

Query: 273 TWRRL-KKKLDEESITFGS 290
               L  K +  + ITF S
Sbjct: 547 LLHGLVSKGVSPDVITFSS 565



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 136/315 (43%), Gaps = 49/315 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+++ G C+  R D A+  L EM+     PN VT+N  +  +C++            I 
Sbjct: 356 YTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKG----------LIE 405

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + ++M   G    V +++ +++ +        +L+    M  K   P   TY++++
Sbjct: 406 QAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCK---PNTITYTTLL 462

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+  R++ A EL+ EM+R    P+  T+N     +  +     A++L  QM E G C
Sbjct: 463 TGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHG-C 521

Query: 182 VPNMHSYNIL-----------------------------------IGMFMALNRMDMVRE 206
            PN+ +YN L                                   IG+    +R++   +
Sbjct: 522 TPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQ 581

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +++ V+  G+ P    Y  ++ GLC++ +   A  +F  M+  G +P + T+  L  GL 
Sbjct: 582 LFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLA 641

Query: 267 QSDMLRTWRRLKKKL 281
              +L+  + L   L
Sbjct: 642 HEGLLKEAQDLLSVL 656



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 113/258 (43%), Gaps = 46/258 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G C   R+D A   + EM+     PNVVT+NVL++  C++  L           
Sbjct: 458 YTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLE---------- 507

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ ++M   G  P++ +++ +L   ++    + +L+ L+ +  KG+ P V T+SS++
Sbjct: 508 EAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSII 567

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L    RIE+A +L   +   G+ P A  YN        R + + A+  +  M  +G C
Sbjct: 568 GILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNG-C 626

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN  +Y I                                   LI GL  +   KEA  
Sbjct: 627 MPNESTYII-----------------------------------LIEGLAHEGLLKEAQD 651

Query: 242 YFVEMIEKGLLPQKVTFE 259
               +  +G+L + +T E
Sbjct: 652 LLSVLCSRGVLNKNLTEE 669


>gi|413934769|gb|AFW69320.1| hypothetical protein ZEAMMB73_542469 [Zea mays]
          Length = 539

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 148/279 (53%), Gaps = 15/279 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC--RRASLHPSERFEK 58
           +Y  L+ GW +  R+D AE+    M + GV P VVTY   ++  C  RR           
Sbjct: 185 IYNILLNGWSRARRLDKAEKLWAAMRDEGVRPTVVTYGTFIDAHCVMRRPD--------- 235

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
              +A  + D+MR  GIE ++ + + +++  + A +   +   L      G+ P ++T++
Sbjct: 236 ---HAMALLDQMREEGIEANLLTCNPIVYALAHAGRFGDAHKVLEKFPLYGVAPNISTFN 292

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           S+V   C  G +  A  +L  M+  G+ P+A TYN FF  +      +  M LY +M  +
Sbjct: 293 SLVFGYCRHGDLAGASRVLKAMLGRGISPTARTYNYFFTVFARNLSIDLGMNLYVKMVSN 352

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G   P+  +Y++LI M    NR+++  ++  +++ SG  PDL + TMLIH LC + +++E
Sbjct: 353 GYA-PDRLTYHLLIKMLCEANRLELTLQMLQEMRNSGFEPDLATSTMLIHLLCRRHQFEE 411

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A   F +M E+G++PQ +T+  L R L +  +++  ++L
Sbjct: 412 AFAEFEQMFERGMVPQYITYRMLMRELKRLGLVKLVQKL 450



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 1/157 (0%)

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
           ++ G  P V  Y+ ++       R++ AE+L   M   GV P+  TY  F   +   +  
Sbjct: 175 EDDGWAPDVRIYNILLNGWSRARRLDKAEKLWAAMRDEGVRPTVVTYGTFIDAHCVMRRP 234

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
           + AM L  QM+E+G+   N+ + N ++       R     ++       G+ P++ ++  
Sbjct: 235 DHAMALLDQMREEGIEA-NLLTCNPIVYALAHAGRFGDAHKVLEKFPLYGVAPNISTFNS 293

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
           L+ G C       A +    M+ +G+ P   T+   +
Sbjct: 294 LVFGYCRHGDLAGASRVLKAMLGRGISPTARTYNYFF 330



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 84/204 (41%), Gaps = 6/204 (2%)

Query: 104 FMKEKGICPTVATYSSVV---KCLCSCGRIEDAEELLGEMVR--NGVCPSAETYNCFFKE 158
           +  E  + P+    S ++     LC  G    A  L+ ++ R  +G  P    YN     
Sbjct: 133 YAVESDVTPSAEALSPLILTIDALCKEGHPRAAALLVAQIRREDDGWAPDVRIYNILLNG 192

Query: 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218
           +   +  + A KL+  M+++G+  P + +Y   I     + R D    + + ++  G+  
Sbjct: 193 WSRARRLDKAEKLWAAMRDEGV-RPTVVTYGTFIDAHCVMRRPDHAMALLDQMREEGIEA 251

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
           +L +   +++ L    ++ +A +   +    G+ P   TF +L  G  +   L    R+ 
Sbjct: 252 NLLTCNPIVYALAHAGRFGDAHKVLEKFPLYGVAPNISTFNSLVFGYCRHGDLAGASRVL 311

Query: 279 KKLDEESITFGSEFQNYHFKPYRR 302
           K +    I+  +   NY F  + R
Sbjct: 312 KAMLGRGISPTARTYNYFFTVFAR 335


>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74900, mitochondrial; AltName: Full=Protein
           ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
           Precursor
 gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
 gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 147/268 (54%), Gaps = 14/268 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++ GWC I R   A   L EM+ERG+ PN+ TYN +L G  R             IR
Sbjct: 198 YNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQ----------IR 247

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A + F EM+ R  E DV +++ V+H +  A + + + +  + M  +G+ P+VATY++++
Sbjct: 248 HAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMI 307

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC    +E+A  +  EMVR G  P+  TYN   +      + +   +L ++M+ +G C
Sbjct: 308 QVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEG-C 366

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE--- 238
            PN  +YN++I  +   + ++    ++  +      P+LD+Y +LI G+  +++ ++   
Sbjct: 367 EPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVV 426

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           A +  +EM+E+G +P+K TF  +  GL+
Sbjct: 427 AGKLLLEMVERGFIPRKFTFNRVLNGLL 454



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 108/234 (46%), Gaps = 4/234 (1%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A K+F  M   G   D+ SF+ +L V  ++ + + + +    ++ +    TV TY+ ++ 
Sbjct: 145 AVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTV-TYNVILN 203

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C   R   A E+L EMV  G+ P+  TYN   K +        A + + +MK+   C 
Sbjct: 204 GWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRD-CE 262

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
            ++ +Y  ++  F     +   R +++++   G+ P + +Y  +I  LC+K   + A   
Sbjct: 263 IDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVM 322

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYH 296
           F EM+ +G  P   T+  L RGL  +        L ++++ E       FQ Y+
Sbjct: 323 FEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCE--PNFQTYN 374



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 48/181 (26%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I   CK + ++ A     EM+ RG EPNV TYNVL+ G+      H  E       
Sbjct: 303 YNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGL-----FHAGE-----FS 352

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL---------------DKLNF-- 104
             E++   M   G EP+  ++++++  YS   + + +L               D  N   
Sbjct: 353 RGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILI 412

Query: 105 ---------------------MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
                                M E+G  P   T++ V+  L   G    A+E+L    ++
Sbjct: 413 SGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKEILRLQSKS 472

Query: 144 G 144
           G
Sbjct: 473 G 473


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  147 bits (372), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 144/281 (51%), Gaps = 17/281 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI  +CK+ RID A   L  M  +G++PN+++YNV++NG+CR          E +++
Sbjct: 252 YNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCR----------EGSMK 301

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ +EM  +G  PD  +++ +L+ Y +      +L     M   G+ P+V TY++++
Sbjct: 302 EAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALI 361

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C    +  A E   +M   G+ P+  TY      +  +   N A ++  +M E G  
Sbjct: 362 NSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFS 421

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN  I     L RM+    +  ++   GL PD+ SY+ +I G C K +   A Q
Sbjct: 422 -PSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQ 480

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
              EM+EKG+ P  VT+ +L +GL +       RRL +  D
Sbjct: 481 MKQEMVEKGVSPDAVTYSSLIQGLCE------MRRLTEACD 515



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 146/286 (51%), Gaps = 12/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G+CK      A     EM+  GV P+VVTY  L+N +C+  +L+ +  F     
Sbjct: 322 YNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEF----- 376

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                FD+MR+RG+ P+  +++ ++  +SR      +   LN M E G  P+V TY++ +
Sbjct: 377 -----FDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFI 431

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R+E+A  ++ EMV  G+ P   +Y+     +  + + + A ++ ++M E G+ 
Sbjct: 432 HGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVS 491

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y+ LI     + R+    ++  ++   GL PD  +YT LI+  C +    +A  
Sbjct: 492 -PDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALH 550

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD-EESI 286
              EMI KG LP  VT+  L  GL +    R  +RL  KL  EES+
Sbjct: 551 LHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESV 596



 Score =  140 bits (352), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 138/286 (48%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C +  +       GEM   G  PNVVTYN L++  C+             I 
Sbjct: 217 YNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR----------ID 266

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M  +G++P++ S++++++   R    + + + L  M  KG  P   TY++++
Sbjct: 267 EAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLL 326

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G    A  +  EMVRNGV PS  TY          ++ N AM+ + QM+  GL 
Sbjct: 327 NGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGL- 385

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +Y  LI  F     ++    I N++  SG  P + +Y   IHG C  ++ +EA  
Sbjct: 386 RPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALG 445

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              EM+EKGL P  V++ T+  G  +   L    ++K+++ E+ ++
Sbjct: 446 VVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVS 491



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 129/281 (45%), Gaps = 32/281 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+ +   ++ A R L EM E G  P+VVTYN  ++G C        ER E+ + 
Sbjct: 392 YTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVL------ERMEEAL- 444

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               V  EM  +G+ PDV S+S ++  + R  +   +      M EKG+ P   TYSS++
Sbjct: 445 ---GVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLI 501

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC   R+ +A +L  EM+  G+ P   TY      Y    D N A+ L+ +M   G  
Sbjct: 502 QGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGF- 560

Query: 182 VPNMHSYNILIGMFMALNRMDMVRE-------------IWNDVKGSGL-----GPDLDSY 223
           +P+  +Y++LI     LN+    RE             + +DV    L       +  S 
Sbjct: 561 LPDAVTYSVLIN---GLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSV 617

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             LI G C K    EA + F  M+E+   P +  +  +  G
Sbjct: 618 VALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHG 658



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 119/240 (49%), Gaps = 22/240 (9%)

Query: 45  CRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS------------------FSIVL 86
           C+  SLH   RF K  + A+ +  E+ +   +P  +S                  F +++
Sbjct: 91  CKCLSLHILTRF-KLYKTAQTLAQELALSASDPSGSSIFQCLKDSYHVYNSSSAVFDLMV 149

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC-SCGRIE-DAEELLGEMVRNG 144
             YS  +    +++ +N  K  G  P V +Y+SV+  +  S G ++  AEE+  EM+R+ 
Sbjct: 150 KSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSR 209

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           V P+  TYN   + +    +    +  + +M+ +G C+PN+ +YN LI  +  + R+D  
Sbjct: 210 VSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNG-CLPNVVTYNTLIDAYCKMGRIDEA 268

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             +   +   G+ P+L SY ++I+GLC +   KEA +   EM  KG  P +VT+ TL  G
Sbjct: 269 FGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNG 328



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 131/284 (46%), Gaps = 11/284 (3%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR-RASLHPSERFEKTIRNA 63
           ++  +  +N ID A   +      G  P V++YN +L+ + R R S+  S         A
Sbjct: 148 MVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLS---------A 198

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
           E+V+ EM    + P+V +++I++  +    + Q  L     M+  G  P V TY++++  
Sbjct: 199 EEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDA 258

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C  GRI++A  LL  M   G+ P+  +YN              A ++  +M   G   P
Sbjct: 259 YCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGF-TP 317

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           +  +YN L+  +           I  ++  +G+ P + +YT LI+ +C+ +    A ++F
Sbjct: 318 DEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFF 377

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            +M  +GL P + T+ TL  G  +  +L    R+  ++ E   +
Sbjct: 378 DQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFS 421



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 41/223 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           YT+LI  +C    ++ A     EMI +G  P+ VTY+VL+NG+ ++A    ++R      
Sbjct: 532 YTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLI 591

Query: 56  ----------FEKTIRN------------------------AEKVFDEMRVRGIEPDVTS 81
                     ++  I N                        A++VF+ M  R  +P    
Sbjct: 592 YEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAV 651

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           +++++H + R      + +    M   G  P   T  +++K L   G  E+  E++G+ +
Sbjct: 652 YNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTL 711

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           R+     AE      +      +    + +   M +DGL +PN
Sbjct: 712 RSCRLNEAELAKVLVEINHKEGNMEAVLNVLTDMAKDGL-LPN 753


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  147 bits (371), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 145/276 (52%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK   I+ A + L EM  +G  P+ +TYN +L+G+CR   +  +++F     
Sbjct: 152 YNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQF----- 206

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                FD M  RG  PDV +++ +L    +  +   ++     +  KG  P   TY+S++
Sbjct: 207 -----FDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSIL 261

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L     +++AEE+  +MV +G  P+  TY+     +   K  + A K+  +M + G  
Sbjct: 262 LGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIG-A 320

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++ +YNIL+      N +D   E+++ +  +G  PD+ SY+++++GLC+  K  +A  
Sbjct: 321 VPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARV 380

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F  MIE+ L+P  VTF  L  GL ++  L   + L
Sbjct: 381 LFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDL 416



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 145/293 (49%), Gaps = 17/293 (5%)

Query: 2   YTSLIYGWCKINRIDMA-ERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y+++I G CK  ++  A E    +MIERG   N V YN L+NG+C+          ++ I
Sbjct: 116 YSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCK----------DENI 165

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+ +EM  +G  PD  +++ +L    R  +   +    + M  +G  P V  Y+ +
Sbjct: 166 ERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGL 225

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L   G+ ++A +L  +++  G  P   TYN        + + + A +++++M   G 
Sbjct: 226 LDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASG- 284

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN  +Y+I++       ++D   ++  ++   G  PD+ +Y +L+ GLC+     +A 
Sbjct: 285 CAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAH 344

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITF 288
           + F  M++ G  P  V++  +  GL +++ +   R L     ++KL  + +TF
Sbjct: 345 ELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTF 397



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 146/313 (46%), Gaps = 49/313 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+ K  R+D A R   EM+  G+EP++ TYN LLN  C+          E  ++
Sbjct: 46  YNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCK----------ETKMK 95

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKL-NFMKEKGICPTVATYSSV 120
            A ++F  M  +G EPDV ++S ++    +  +   +L+ L + M E+G       Y+++
Sbjct: 96  EAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNAL 155

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC----------------FFKE------ 158
           +  LC    IE A +LL EM   G  P   TYN                 FF        
Sbjct: 156 INGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGY 215

Query: 159 ------YRGRKDA-------NGAMKLYRQMKEDGLCVPNMHSYN-ILIGMFMALNRMDMV 204
                 Y G  DA       + AMKL++ +   G  +P+  +YN IL+G+    N MD  
Sbjct: 216 SPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGY-MPDTVTYNSILLGLARKSN-MDEA 273

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            E++  +  SG  P+  +Y++++ G C  +K  +A +   EM + G +P  VT+  L  G
Sbjct: 274 EEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDG 333

Query: 265 LIQSDMLRTWRRL 277
           L +++++     L
Sbjct: 334 LCKTNLVDKAHEL 346



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 141/278 (50%), Gaps = 12/278 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++  +CK  ++    +   +M++ G+ P+ + YN+L++G  ++            +  A 
Sbjct: 14  VLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGR----------VDEAN 63

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           ++++EM   G+EP + +++ +L+ + +  + + +++    M EKG  P V TYS+++  L
Sbjct: 64  RLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGL 123

Query: 125 CSCGRIEDAEELL-GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           C  G++ +A E+L  +M+  G   +   YN         ++   A KL  +M   G  VP
Sbjct: 124 CKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGY-VP 182

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           +  +YN ++     + ++   ++ ++ +   G  PD+ +Y  L+  L ++ K  EA + F
Sbjct: 183 DNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLF 242

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            ++I KG +P  VT+ ++  GL +   +     + KK+
Sbjct: 243 KDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKM 280



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 127/276 (46%), Gaps = 26/276 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI- 60
           Y +++ G C++ ++  A++F   M  RG  P+VV YN LL+ + +      + +  K + 
Sbjct: 187 YNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVI 246

Query: 61  ------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     AE++F +M   G  P+  ++SIVL  + RA +  
Sbjct: 247 AKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVD 306

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L  M + G  P V TY+ ++  LC    ++ A EL   MV NG  P   +Y+   
Sbjct: 307 DAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVL 366

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A  L+ +M E  L VP++ ++NIL+       ++D  +++ + +  SG 
Sbjct: 367 NGLCKTNKVHDARVLFDRMIERKL-VPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGC 425

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
            PD  +Y  L++GL ++ +  +A +    M EKG L
Sbjct: 426 APDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFL 461



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 102/239 (42%), Gaps = 47/239 (19%)

Query: 28  RGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 87
           R   PN  T+ V+L   C++  L          R+  K+F++M   GI PD   ++I++ 
Sbjct: 2   RECSPNRYTFRVVLKSFCKQGKL----------RDGYKLFEQMLDNGISPDGIEYNILID 51

Query: 88  VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
            Y++                                    GR+++A  L  EMV  G+ P
Sbjct: 52  GYAKK-----------------------------------GRVDEANRLYEEMVSVGLEP 76

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE- 206
           S  TYN     +        AM+L++ M E G   P++ +Y+ +I       ++    E 
Sbjct: 77  SIYTYNSLLNAFCKETKMKEAMELFKTMAEKGF-EPDVVTYSTIISGLCKTGKVTEALEM 135

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +++ +   G   +  +Y  LI+GLC+ +  + A +   EM  KG +P  +T+ T+  GL
Sbjct: 136 LFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGL 194



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 1/122 (0%)

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+  T+    K +  +       KL+ QM ++G+  P+   YNILI  +    R+D    
Sbjct: 6   PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGIS-PDGIEYNILIDGYAKKGRVDEANR 64

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++ ++   GL P + +Y  L++  C++ K KEA + F  M EKG  P  VT+ T+  GL 
Sbjct: 65  LYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLC 124

Query: 267 QS 268
           ++
Sbjct: 125 KT 126


>gi|449437378|ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
 gi|449503560|ref|XP_004162063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
          Length = 615

 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 147/273 (53%), Gaps = 20/273 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI GW +  ++  A+R   EM +  + P VVTY  L+ G CR           +++ 
Sbjct: 270 YNILINGWFRSRKLKHAQRLWFEMKKNKISPTVVTYGTLIEGYCRM----------RSVE 319

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN-FMK-EKGICPTVATYSS 119
            A ++ DEMR  GIEP+   ++ ++     A + + +L  +  FM  E+G  PT++TY+S
Sbjct: 320 IAIELVDEMRREGIEPNAIVYNPIVDALGEAGRFKEALGMMERFMVLEQG--PTISTYNS 377

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +VK  C  G +  A ++L  M+  G  P+  TYN FF+ +        +M LY +M E G
Sbjct: 378 LVKGYCKAGDLSGASKILKMMIGRGFTPTPTTYNYFFRFFSKYGKIEESMSLYNKMIESG 437

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              P+  +Y++L+ M     R+++  ++ N++K  G   DL + TML+H LC+  K++EA
Sbjct: 438 YA-PDKLTYHLLLKMLCEEERLNLAVQVCNEMKARGFDMDLATSTMLMHLLCKMHKFEEA 496

Query: 240 CQYFVEMIEKGLLPQKVTF-----ETLYRGLIQ 267
              F  MI +G++PQ +TF     E + RGL +
Sbjct: 497 FAEFEHMIHRGIVPQYLTFCRLHDEFMKRGLTK 529



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 46/251 (18%), Positives = 93/251 (37%), Gaps = 43/251 (17%)

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           ++++R    + D +   GI P  +    V   +  + +   SL  L   K+ G  P+ A 
Sbjct: 98  DRSVRPGAALEDALDRTGIVPSSSLLEAVFDHFDSSPKFLHSL-FLWAAKKSGFRPSAAL 156

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNG---VCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           ++ ++  L      + A  L+   +R G      S E +    + Y        A++ Y 
Sbjct: 157 FNRLINVLAKSREFDSAWSLITSRLRGGEESFLVSVEVFVILIRRYARAGMVQPAIRTYE 216

Query: 174 -----------------QMKEDGLCV----------------------PNMHSYNILIGM 194
                            ++  D LC                       P++ +YNILI  
Sbjct: 217 FACNLETISGTGSEGLFEILLDSLCKEGHVRVASEYFNRKREMGSSFEPSIRAYNILING 276

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
           +    ++   + +W ++K + + P + +Y  LI G C  +  + A +   EM  +G+ P 
Sbjct: 277 WFRSRKLKHAQRLWFEMKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPN 336

Query: 255 KVTFETLYRGL 265
            + +  +   L
Sbjct: 337 AIVYNPIVDAL 347


>gi|224128340|ref|XP_002320305.1| predicted protein [Populus trichocarpa]
 gi|222861078|gb|EEE98620.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 142/254 (55%), Gaps = 12/254 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GWC++  +  A R   EM++ G +P++VT+N++L G+ R           K   
Sbjct: 246 YTVLLNGWCRVKNLMEAGRIWNEMLDEGFKPDIVTHNIMLEGLLR----------SKKRS 295

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K F+ M+ +G  PDV S++I++    +  + + ++     M + G  P  A Y+ ++
Sbjct: 296 DAIKFFEVMKAKGPSPDVRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLM 355

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               +  R++   ELL EM   G  P  +TYN   K    ++  + A+++Y++M ++G+ 
Sbjct: 356 TGYGNHKRMDMVYELLKEMKEKGCPPDGKTYNALIKLMTSQRMPDDAVRIYKKMIQNGI- 414

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++HSYN+++  +  +   +M   +W+++   G  PD +SYT+ I GL  + + +EAC+
Sbjct: 415 EPSIHSYNMIMKSYFRIRNYEMGHAVWDEMSKKGFCPDDNSYTVFIGGLISQGRSEEACK 474

Query: 242 YFVEMIEKGL-LPQ 254
           Y  EMIEKG+  PQ
Sbjct: 475 YLEEMIEKGMKAPQ 488



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 88/179 (49%), Gaps = 10/179 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT L+ G+    R+DM    L EM E+G  P+  TYN L+        L  S+R     
Sbjct: 350 VYTCLMTGYGNHKRMDMVYELLKEMKEKGCPPDGKTYNALIK-------LMTSQRMPD-- 400

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A +++ +M   GIEP + S+++++  Y R    ++     + M +KG CP   +Y+  
Sbjct: 401 -DAVRIYKKMIQNGIEPSIHSYNMIMKSYFRIRNYEMGHAVWDEMSKKGFCPDDNSYTVF 459

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +  L S GR E+A + L EM+  G+      YN F  ++      +   +L ++MK  G
Sbjct: 460 IGGLISQGRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRAGKPDILEELAQKMKFSG 518



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 94/187 (50%), Gaps = 4/187 (2%)

Query: 79  VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLG 138
           + +FSI +  ++ A + + ++     MK       V T ++++  L      ++A+ L G
Sbjct: 174 LDTFSIAMRAFAAAKERKKAVGIFELMKNHKYRVGVETINALLDSLGRAKLGKEAQALFG 233

Query: 139 EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMA 197
           ++      P+  TY      +   K+   A +++ +M ++G   P++ ++NI++ G+  +
Sbjct: 234 KL-EGRFTPNLRTYTVLLNGWCRVKNLMEAGRIWNEMLDEGF-KPDIVTHNIMLEGLLRS 291

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
             R D ++  +  +K  G  PD+ SYT+LI  LC++ K KEA  YF EM++ G  P    
Sbjct: 292 KKRSDAIK-FFEVMKAKGPSPDVRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAV 350

Query: 258 FETLYRG 264
           +  L  G
Sbjct: 351 YTCLMTG 357



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 110/281 (39%), Gaps = 15/281 (5%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M+E   E  ++T +     +  RA     ER     + A  +F+ M+       V + + 
Sbjct: 162 MLEEMGEKRLLTLDTF--SIAMRAFAAAKER-----KKAVGIFELMKNHKYRVGVETINA 214

Query: 85  VLHVYSRAH---QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           +L    RA    + Q    KL    E    P + TY+ ++   C    + +A  +  EM+
Sbjct: 215 LLDSLGRAKLGKEAQALFGKL----EGRFTPNLRTYTVLLNGWCRVKNLMEAGRIWNEML 270

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
             G  P   T+N   +     K  + A+K +  MK  G   P++ SY ILI       +M
Sbjct: 271 DEGFKPDIVTHNIMLEGLLRSKKRSDAIKFFEVMKAKGPS-PDVRSYTILIRDLCKQTKM 329

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
                 + ++  SG  PD   YT L+ G    ++     +   EM EKG  P   T+  L
Sbjct: 330 KEAVGYFYEMVDSGCHPDAAVYTCLMTGYGNHKRMDMVYELLKEMKEKGCPPDGKTYNAL 389

Query: 262 YRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR 302
            + +    M     R+ KK+ +  I       N   K Y R
Sbjct: 390 IKLMTSQRMPDDAVRIYKKMIQNGIEPSIHSYNMIMKSYFR 430


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 145/320 (45%), Gaps = 46/320 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G C   +I  A     EM+ RG EPNV++YN ++NG+C+  +            
Sbjct: 161 FNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGN----------TS 210

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  VF +M   G +PDV +++ ++    +      +++ L+ M ++GI P V TY+ +V
Sbjct: 211 MAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMV 270

Query: 122 KCLCSCGRIEDAEELLGEMV-----------------------------------RNGVC 146
              C  G++ +A  L  EMV                                     GV 
Sbjct: 271 HGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVE 330

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+  TYN     Y  ++  N A K++  M   G C P +HSYNILI  F    RMD  + 
Sbjct: 331 PNISTYNALMDGYCLQRLMNEAKKVFEIMIRQG-CAPGVHSYNILINGFCKSRRMDEAKS 389

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +  ++    L PD  +Y+ L+ GLC+  + KEA   F EM   GLLP  VT+  L  G  
Sbjct: 390 LLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFC 449

Query: 267 QSDMLRTWRRLKKKLDEESI 286
           +   L    +L K + E+ +
Sbjct: 450 KHGHLDEALKLLKSMQEKKL 469



 Score =  146 bits (369), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 142/297 (47%), Gaps = 44/297 (14%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI   C++N +D A   LG+M + G+ P   T+N L+NG+C           E  I+ A 
Sbjct: 129 LINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCN----------EGKIKEAV 178

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           ++F+EM  RG EP+V S++ +++   +     +++D    M++ G  P V TY++++  L
Sbjct: 179 ELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSL 238

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE------- 177
           C    + DA E L EM+  G+ P+  TYNC    +      N A +L+++M         
Sbjct: 239 CKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDT 298

Query: 178 -------DGLCV--------------------PNMHSYNILIGMFMALNRMDMVREIWND 210
                  DGLC                     PN+ +YN L+  +     M+  ++++  
Sbjct: 299 VTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEI 358

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           +   G  P + SY +LI+G C+ ++  EA     EM  K L P  VT+ TL +GL Q
Sbjct: 359 MIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQ 415



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 147/276 (53%), Gaps = 13/276 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T L+ G CK   +  A      M E+GVEPN+ TYN L++G C           ++ +  
Sbjct: 302 TILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYC----------LQRLMNE 351

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A+KVF+ M  +G  P V S++I+++ + ++ +   +   L  M  K + P   TYS++++
Sbjct: 352 AKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQ 411

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  GR ++A  +  EM   G+ P+  TY+     +      + A+KL + M+E  L  
Sbjct: 412 GLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKL-E 470

Query: 183 PNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           PN+  + ILI GMF+A  ++++ +E+++ +   G+ P + +YT++I GL ++    EA  
Sbjct: 471 PNIVHHTILIEGMFIA-GKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYD 529

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F +M + G LP   ++  + +G +Q+    T  RL
Sbjct: 530 LFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRL 565



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127
           ++M + G+  +V S +++++   R +    ++  L  M + GI PT +T+++++  LC+ 
Sbjct: 112 NQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNE 171

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
           G+I++A EL  EMVR G  P+  +YN          + + A+ ++++M+++G C P++ +
Sbjct: 172 GKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNG-CKPDVVT 230

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           YN +I        ++   E  +++   G+ P++ +Y  ++HG C   +  EA + F EM+
Sbjct: 231 YNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMV 290

Query: 248 EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            + ++P  VT   L  GL +  M+   R + + + E+ +
Sbjct: 291 GRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGV 329



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 92/174 (52%), Gaps = 10/174 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++L+ G C+  R   A     EM   G+ PN+VTY++LL+G C+   L           
Sbjct: 406 YSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLD---------- 455

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+   M+ + +EP++   +I++     A + +++ +  + +   GI PT+ TY+ ++
Sbjct: 456 EALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMI 515

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           K L   G  ++A +L  +M  +G  P++ +YN   + +   +D++ A++L  +M
Sbjct: 516 KGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEM 569


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 138/260 (53%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G CK   +D+A   L EM E+G++PNV TYN L+NG+C+  +          I 
Sbjct: 465 YTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGN----------IE 514

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ +EM + G  PD  +++ ++  Y +  +   + + L  M +KG+ PT+ T++ ++
Sbjct: 515 QAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLM 574

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +ED E L+  M+  G+ P+A T+N   K+Y  R +    +++Y+ M   G+ 
Sbjct: 575 NGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGV- 633

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+ ++YNILI        M     +  ++   G      SY  LI G  +++K++EA +
Sbjct: 634 VPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARK 693

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F EM   G + +K  ++  
Sbjct: 694 LFEEMRTHGFIAEKEIYDIF 713



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 133/263 (50%), Gaps = 11/263 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+LI G+ K   + +  +   EM  + + P+ VTY  +++G+C+             +
Sbjct: 359 VYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGK----------V 408

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+F EM  +G++PD  +++ ++  Y +A + + +    N M EKG+ P V TY+++
Sbjct: 409 VEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTAL 468

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  LC CG ++ A ELL EM   G+ P+  TYN          +   A+KL  +M   G 
Sbjct: 469 VDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGF 528

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  +Y  ++  +  +  M    E+   +   GL P + ++ +L++G C     ++  
Sbjct: 529 -FPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGE 587

Query: 241 QYFVEMIEKGLLPQKVTFETLYR 263
           +    M++KG++P   TF +L +
Sbjct: 588 RLIKWMLDKGIMPNATTFNSLMK 610



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 149/334 (44%), Gaps = 51/334 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ ++ G+C++ ++    + + E+  +G++PN  TYN +++ +C+             + 
Sbjct: 290 YSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGR----------VV 339

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+V   M+ + I PD   ++ ++  + ++    +     + MK K I P   TY+S++
Sbjct: 340 EAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMI 399

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++ +A +L  EM+  G+ P   TY      Y    +   A  L+ QM E GL 
Sbjct: 400 HGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGL- 458

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  L+        +D+  E+ +++   GL P++ +Y  LI+GLC+    ++A +
Sbjct: 459 TPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVK 518

Query: 242 YFVEM-----------------------------------IEKGLLPQKVTFETLYRGLI 266
              EM                                   ++KGL P  VTF  L  G  
Sbjct: 519 LMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFC 578

Query: 267 QSDMLRTWRRLKKKLDEESI-----TFGSEFQNY 295
            S ML    RL K + ++ I     TF S  + Y
Sbjct: 579 MSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQY 612



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 136/285 (47%), Gaps = 26/285 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC---------------R 46
           Y  +++  C++ ++  A   L +M  RG  P+VV+Y+V+++G C               +
Sbjct: 255 YNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQ 314

Query: 47  RASLHPSERFEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           R  L P++    +I +          AE+V   M+ + I PD   ++ ++  + ++    
Sbjct: 315 RKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVS 374

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           +     + MK K I P   TY+S++  LC  G++ +A +L  EM+  G+ P   TY    
Sbjct: 375 VEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALI 434

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y    +   A  L+ QM E GL  PN+ +Y  L+        +D+  E+ +++   GL
Sbjct: 435 DGYCKAGEMKEAFSLHNQMVEKGL-TPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGL 493

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            P++ +Y  LI+GLC+    ++A +   EM   G  P  +T+ T+
Sbjct: 494 QPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTI 538



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 132/272 (48%), Gaps = 11/272 (4%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           I  A R   E  E GV  N V+YN++L+ +C+             ++ A  +  +M  RG
Sbjct: 233 IRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGK----------VKEAHSLLIQMEFRG 282

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
             PDV S+S+++  Y +  Q    L  +  ++ KG+ P   TY+S++  LC  GR+ +AE
Sbjct: 283 NVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAE 342

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           ++L  M    + P    Y      +    + +   KL+ +MK   + VP+  +Y  +I  
Sbjct: 343 QVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKI-VPDFVTYTSMIHG 401

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                ++   R++++++   GL PD  +YT LI G C+  + KEA     +M+EKGL P 
Sbjct: 402 LCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPN 461

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            VT+  L  GL +   +     L  ++ E+ +
Sbjct: 462 VVTYTALVDGLCKCGEVDIANELLHEMSEKGL 493



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 114/228 (50%), Gaps = 1/228 (0%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           IR A +VF E    G+  +  S++I+LH+  +  + + +   L  M+ +G  P V +YS 
Sbjct: 233 IRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSV 292

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +V   C   ++    +L+ E+ R G+ P+  TYN              A ++ R MK   
Sbjct: 293 IVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQR 352

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  P+   Y  LI  F     + +  ++++++K   + PD  +YT +IHGLC+  K  EA
Sbjct: 353 I-FPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEA 411

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            + F EM+ KGL P +VT+  L  G  ++  ++    L  ++ E+ +T
Sbjct: 412 RKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLT 459


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  147 bits (370), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 136/264 (51%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G CKI     A   L +M E G +PNVVTY+ +++          S R ++ + 
Sbjct: 206 YTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIID----------SHRKDRRVN 255

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F  M+V+GI PD+ +++ ++       Q + +   LN M+   I P + T++ +V
Sbjct: 256 EALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLV 315

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G++ +A+ +L  M   GV P   TY+     Y  R +   A KL+  M   G C
Sbjct: 316 DTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKG-C 374

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SYNILI  +  + R+D  ++++N++   GL P+  SY  LIHGLC+    +EA  
Sbjct: 375 KPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARN 434

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F  M   G LP   T+  L  G 
Sbjct: 435 LFKNMHTNGNLPNLFTYSILLDGF 458



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 144/280 (51%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI   CK+ +   A     +M+ RG  P+V TY  ++NG+C+               
Sbjct: 171 FTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAA--------- 221

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +M   G +P+V ++S ++  + +  +   +LD  ++MK KGI P + TY+S++
Sbjct: 222 -AAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLI 280

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC+  + ++A  LL EM    + P   T+N            + A  + + M E G+ 
Sbjct: 281 QGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGV- 339

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ L+  +   + +   R++++ +   G  PD+ SY +LI+G C+ ++  EA Q
Sbjct: 340 EPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQ 399

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            F EMI +GL P  V++ TL  GL Q   LR  R L K +
Sbjct: 400 LFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNM 439



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 138/291 (47%), Gaps = 26/291 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           Y SLI G C  ++   A   L EM    + P++VT+NVL++ +C+   +  ++   KT  
Sbjct: 276 YNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMT 335

Query: 60  -----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  +  A K+FD M  +G +PDV S++I+++ Y +  +  
Sbjct: 336 EMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRID 395

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    N M  +G+ P   +Y++++  LC  G + +A  L   M  NG  P+  TY+   
Sbjct: 396 EAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILL 455

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +  +     A +L+R M +     PN+  YNILI        +   R++++++   GL
Sbjct: 456 DGFCKQGYFGKAFRLFRAM-QSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGL 514

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            P+   YT +I+GLC++    EA + F  M E G  P ++++  + RG + 
Sbjct: 515 QPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLH 565



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 137/294 (46%), Gaps = 15/294 (5%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           C    ID A      M+ R   P ++ +  LL+ + +        ++  T+ +  K   +
Sbjct: 73  CSFRNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMG------QYYDTVISLTK---Q 123

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           M + G+ P++ + SI+++ +S   +  L+   L  + + G+ PT+ T+++++  LC  G+
Sbjct: 124 MELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGK 183

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
              A EL  +MV  G  P   TY           +   A  L ++M+E G C PN+ +Y+
Sbjct: 184 FAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAG-CQPNVVTYS 242

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            +I       R++   +I++ +K  G+ PD+ +Y  LI GLC   +WKEA     EM   
Sbjct: 243 TIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSL 302

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE-----ESITFGSEFQNYHFK 298
            ++P  VTF  L   + +   +   + + K + E     + +T+ S    Y  +
Sbjct: 303 NIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLR 356



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 45/214 (21%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CK+ RID A++   EMI +G+ PN V+YN L++G+C+  SL          R
Sbjct: 381 YNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSL----------R 430

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVY-----------------SRAHQPQLSL----- 99
            A  +F  M   G  P++ ++SI+L  +                 S   +P L +     
Sbjct: 431 EARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILI 490

Query: 100 ----------DKLNFMKE---KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                     D      E   KG+ P    Y++++  LC  G +++A E    M  +G  
Sbjct: 491 DAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCP 550

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           P   +YN   + +   KD + A++L  +M++ G 
Sbjct: 551 PDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGF 584



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 10/118 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY  LI   CK   +  A +   E+  +G++PN   Y  ++NG+C+          E  +
Sbjct: 485 MYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCK----------EGLL 534

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
             A + F  M   G  PD  S+++++  +        ++  +  M++KG    V T +
Sbjct: 535 DEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGTTA 592


>gi|357141094|ref|XP_003572081.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Brachypodium distachyon]
          Length = 541

 Score =  147 bits (370), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 139/262 (53%), Gaps = 11/262 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+ GW    R++  E+   EM   GV   VV+Y  L+  +C     HP +       
Sbjct: 191 YNMLLDGWSSARRLEKVEKLWAEMRLAGVRSTVVSYGTLIKALCMMQ--HPDK------- 241

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + DEMR +GIE ++ + + +++  + A + Q +   L      G+ P ++T++S+V
Sbjct: 242 -AASLLDEMREQGIEANLLTCNPIVYSLALAGRFQDAYKLLEKFPLYGVAPNISTFNSLV 300

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +  A  +L  M+  G+ P+A+TYN FF  +    +    M LY +M  +G  
Sbjct: 301 LGYCKYGDLAGASSVLKAMIGRGILPTAKTYNYFFVFFAKTCNVELGMNLYNKMVNNGYA 360

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN+LI M    NR+++V ++  ++K SG   DL + TMLIH LC   +++EAC 
Sbjct: 361 -PDQITYNLLIKMLCEANRLELVVQMIKEMKTSGFESDLATSTMLIHLLCRSHQFEEACV 419

Query: 242 YFVEMIEKGLLPQKVTFETLYR 263
            F +M  +GL+PQ +T+  L +
Sbjct: 420 EFEDMFRRGLVPQYITYRMLMK 441



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 14/161 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           + SL+ G+CK   +  A   L  MI RG+ P   TYN                 F KT  
Sbjct: 296 FNSLVLGYCKYGDLAGASSVLKAMIGRGILPTAKTYNYFF------------VFFAKTCN 343

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +     ++++M   G  PD  ++++++ +   A++ +L +  +  MK  G    +AT + 
Sbjct: 344 VELGMNLYNKMVNNGYAPDQITYNLLIKMLCEANRLELVVQMIKEMKTSGFESDLATSTM 403

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160
           ++  LC   + E+A     +M R G+ P   TY    KE +
Sbjct: 404 LIHLLCRSHQFEEACVEFEDMFRRGLVPQYITYRMLMKEIK 444



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 66/139 (47%), Gaps = 10/139 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y      + K   +++      +M+  G  P+ +TYN+L+  +C       + R E  + 
Sbjct: 331 YNYFFVFFAKTCNVELGMNLYNKMVNNGYAPDQITYNLLIKMLCE------ANRLELVV- 383

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++  EM+  G E D+ + ++++H+  R+HQ + +  +   M  +G+ P   TY  ++
Sbjct: 384 ---QMIKEMKTSGFESDLATSTMLIHLLCRSHQFEEACVEFEDMFRRGLVPQYITYRMLM 440

Query: 122 KCLCSCGRIEDAEELLGEM 140
           K +   G +E  E+L   M
Sbjct: 441 KEIKRLGLVELVEKLTNLM 459



 Score = 44.7 bits (104), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 42/76 (55%)

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           +E  L  P+  +YN+L+  + +  R++ V ++W +++ +G+   + SY  LI  LC  Q 
Sbjct: 179 EEGTLPAPDERTYNMLLDGWSSARRLEKVEKLWAEMRLAGVRSTVVSYGTLIKALCMMQH 238

Query: 236 WKEACQYFVEMIEKGL 251
             +A     EM E+G+
Sbjct: 239 PDKAASLLDEMREQGI 254



 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 46/232 (19%), Positives = 96/232 (41%), Gaps = 17/232 (7%)

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMK---------EKGICPTVAT--YSSVVKCLCSCGR 129
           +F+ ++  Y+R  +   +L   +F++         + G C   AT   +  V  LC  G 
Sbjct: 106 AFAPLIRRYARLGRATAALRAFHFLRRHPDRYSVVDGGDCSPAATCLLNMTVGALCKEGH 165

Query: 130 IEDAEELLGEMVRN--GVCPSAE--TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
              A +L+ +  R+  G  P+ +  TYN     +   +      KL+ +M+  G+    +
Sbjct: 166 PRPAAKLI-QRCRHEEGTLPAPDERTYNMLLDGWSSARRLEKVEKLWAEMRLAGV-RSTV 223

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
            SY  LI     +   D    + ++++  G+  +L +   +++ L    ++++A +   +
Sbjct: 224 VSYGTLIKALCMMQHPDKAASLLDEMREQGIEANLLTCNPIVYSLALAGRFQDAYKLLEK 283

Query: 246 MIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
               G+ P   TF +L  G  +   L     + K +    I   ++  NY F
Sbjct: 284 FPLYGVAPNISTFNSLVLGYCKYGDLAGASSVLKAMIGRGILPTAKTYNYFF 335


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  147 bits (370), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 143/281 (50%), Gaps = 17/281 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI  +CK+ RID A   L  M  +G++PN+++YNV++NG+CR  S+          +
Sbjct: 48  YNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSM----------K 97

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ +EM  +G  PD  +++ +L+ Y +      +L     M   G+ P+V TY++++
Sbjct: 98  EAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALI 157

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C    +  A E   +M   G+ P+  TY      +  +   N A ++  +M E G  
Sbjct: 158 NSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFS 217

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN  I     L RM+    +  ++   GL PD+ SY+ +I G C K +   A Q
Sbjct: 218 -PSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQ 276

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
              EM+EKG+ P  VT+ +L +GL +       RRL +  D
Sbjct: 277 MKQEMVEKGVSPDAVTYSSLIQGLCE------MRRLTEACD 311



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 146/286 (51%), Gaps = 12/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G+CK      A     EM+  GV P+VVTY  L+N +C+  +L+ +  F     
Sbjct: 118 YNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEF----- 172

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                FD+MR+RG+ P+  +++ ++  +SR      +   LN M E G  P+V TY++ +
Sbjct: 173 -----FDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFI 227

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R+E+A  ++ EMV  G+ P   +Y+     +  + + + A ++ ++M E G+ 
Sbjct: 228 HGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVS 287

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y+ LI     + R+    ++  ++   GL PD  +YT LI+  C +    +A  
Sbjct: 288 -PDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALH 346

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD-EESI 286
              EMI KG LP  VT+  L  GL +    R  +RL  KL  EES+
Sbjct: 347 LHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESV 392



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 138/286 (48%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C +  +       GEM   G  PNVVTYN L++  C+             I 
Sbjct: 13  YNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR----------ID 62

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M  +G++P++ S++++++   R    + + + L  M  KG  P   TY++++
Sbjct: 63  EAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLL 122

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G    A  +  EMVRNGV PS  TY          ++ N AM+ + QM+  GL 
Sbjct: 123 NGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGL- 181

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +Y  LI  F     ++    I N++  SG  P + +Y   IHG C  ++ +EA  
Sbjct: 182 RPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALG 241

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              EM+EKGL P  V++ T+  G  +   L    ++K+++ E+ ++
Sbjct: 242 VVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVS 287



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 129/281 (45%), Gaps = 32/281 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+ +   ++ A R L EM E G  P+VVTYN  ++G C        ER E+ + 
Sbjct: 188 YTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVL------ERMEEAL- 240

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               V  EM  +G+ PDV S+S ++  + R  +   +      M EKG+ P   TYSS++
Sbjct: 241 ---GVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLI 297

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC   R+ +A +L  EM+  G+ P   TY      Y    D N A+ L+ +M   G  
Sbjct: 298 QGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGF- 356

Query: 182 VPNMHSYNILIGMFMALNRMDMVRE-------------IWNDVKGSGL-----GPDLDSY 223
           +P+  +Y++LI     LN+    RE             + +DV    L       +  S 
Sbjct: 357 LPDAVTYSVLIN---GLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSV 413

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             LI G C K    EA + F  M+E+   P +  +  +  G
Sbjct: 414 VALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHG 454



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 99/213 (46%), Gaps = 1/213 (0%)

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           + P+V +++I++  +    + Q  L     M+  G  P V TY++++   C  GRI++A 
Sbjct: 6   VSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAF 65

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
            LL  M   G+ P+  +YN              A ++  +M   G   P+  +YN L+  
Sbjct: 66  GLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGF-TPDEVTYNTLLNG 124

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
           +           I  ++  +G+ P + +YT LI+ +C+ +    A ++F +M  +GL P 
Sbjct: 125 YCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPN 184

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           + T+ TL  G  +  +L    R+  ++ E   +
Sbjct: 185 ERTYTTLIDGFSRQGLLNEAYRILNEMTESGFS 217



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 1/125 (0%)

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
           M+R+ V P+  TYN   + +    +    +  + +M+ +G C+PN+ +YN LI  +  + 
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNG-CLPNVVTYNTLIDAYCKMG 59

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           R+D    +   +   G+ P+L SY ++I+GLC +   KEA +   EM  KG  P +VT+ 
Sbjct: 60  RIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYN 119

Query: 260 TLYRG 264
           TL  G
Sbjct: 120 TLLNG 124



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 40/182 (21%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           YT+LI  +C    ++ A     EMI +G  P+ VTY+VL+NG+ ++A    ++R      
Sbjct: 328 YTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLI 387

Query: 56  ----------FEKTIRN------------------------AEKVFDEMRVRGIEPDVTS 81
                     ++  I N                        A++VF+ M  R  +P    
Sbjct: 388 YEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAV 447

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           +++++H + R      + +    M   G  P   T  +++K L   G  E+  E++G+ +
Sbjct: 448 YNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTL 507

Query: 142 RN 143
           R+
Sbjct: 508 RS 509


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  146 bits (369), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 139/282 (49%), Gaps = 11/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I G C   R+  A   L +M+ RG +P+VVTY VLL  VC+               
Sbjct: 179 YTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFG---------- 228

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V DEMR +G  P++ +++++++   R  +   + + LN +   G  P   +Y++V+
Sbjct: 229 QAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVL 288

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC+  R ED EEL  EM+     P+  T++   + +        A+++  QM   G C
Sbjct: 289 KGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG-C 347

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N    NI+I       R+D   +  N++   G  PD  SYT ++ GLC  ++W++A +
Sbjct: 348 AANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKE 407

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
              EM+ K   P +VTF T    L Q  ++     L +++ E
Sbjct: 408 LLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSE 449



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 132/286 (46%), Gaps = 14/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+++ G C   R +  E    EM+E+   PN VT+++L+   CR             + 
Sbjct: 284 YTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGG----------MVE 333

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V ++M   G   + T  +IV++   +  +   +   LN M   G  P   +Y++V+
Sbjct: 334 RAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVL 393

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC   R EDA+ELL EMVR    P+  T+N F      +     A  L  QM E G C
Sbjct: 394 KGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG-C 452

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+ +YN L+  F    R+D   E++  +      P+  +YT L+ GLC  ++   A +
Sbjct: 453 EVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAE 509

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              EM++K   P  VTF  L     Q  ++     L +++ E   T
Sbjct: 510 LLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCT 555



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 121/255 (47%), Gaps = 16/255 (6%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A R +     RG  P+V     L+  +CRR     + R    +R AE+        G   
Sbjct: 93  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARV---LRAAER-------SGTAV 142

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLN-FMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           DV +++ ++  Y R  Q    LD     +    + P   TY+ +++ LC  GR+ +A  L
Sbjct: 143 DVFAYNTLVAGYCRYGQ----LDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSL 198

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
           L +M+  G  PS  TY    +          AM++  +M+  G C PN+ +YN++I    
Sbjct: 199 LDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKG-CTPNIVTYNVIINGMC 257

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
              R+D  RE  N +   G  PD  SYT ++ GLC  ++W++  + F EM+EK  +P +V
Sbjct: 258 REGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEV 317

Query: 257 TFETLYRGLIQSDML 271
           TF+ L R   +  M+
Sbjct: 318 TFDMLVRFFCRGGMV 332



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 139/280 (49%), Gaps = 14/280 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + + I   C+   I+ A   + +M E G E N+VTYN L+NG C           +  + 
Sbjct: 424 FNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFC----------VQGRVD 473

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F  M  +   P+  +++ +L     A +   + + L  M +K   P V T++ +V
Sbjct: 474 SALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLV 530

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +++A EL+ +M+ +G  P+  TYN          ++  A++L   +  +G+ 
Sbjct: 531 SFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGV- 589

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ +IG+    +R++   ++++ V+  G+ P    Y  ++  LC++     A  
Sbjct: 590 SPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAID 649

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +F  M+  G +P ++T+ TL  GL   D L+  R L ++L
Sbjct: 650 FFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLREL 689



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 15/192 (7%)

Query: 108 KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG 167
           +G  P V   + +++ LC  GR  DA  +L    R+G       YN     Y      + 
Sbjct: 103 RGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDA 162

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           A +L   M       P+ ++Y  +I       R+     + +D+   G  P + +YT+L+
Sbjct: 163 ARRLIASMP----VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLL 218

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             +C+   + +A +   EM  KG  P  VT+  +  G+ +   +   R    +L      
Sbjct: 219 EAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRL------ 272

Query: 288 FGSEFQNYHFKP 299
                 +Y F+P
Sbjct: 273 -----SSYGFQP 279


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  146 bits (369), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 149/285 (52%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK+     A R LG M+++  +PNV  YN +++ +C+          ++ + 
Sbjct: 169 YGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCK----------DRQVT 218

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM  +GI PD+ +++ ++H      + +     LN M +  I P V ++++VV
Sbjct: 219 EAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVV 278

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++ +A +++ +M++ GV P+  TY      +    + + A+K++  M   G C
Sbjct: 279 DALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKG-C 337

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+ SYN LI  +  + R+D    ++ ++    L PD  +Y+ LIHGLC  ++ ++A  
Sbjct: 338 MPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIA 397

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F EM+    +P  VT+  L   L ++  L     L K ++  ++
Sbjct: 398 LFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNL 442



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 134/268 (50%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +++   CK  ++  A   + +MI+RGVEPNVVTY  L++G C  + +           
Sbjct: 274 FNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMD---------- 323

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KVFD M  +G  P+V S++ +++ Y +  +   ++     M  + + P   TYS+++
Sbjct: 324 EAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLI 383

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R++DA  L  EMV     P+  TY          +    AM L + ++   L 
Sbjct: 384 HGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNL- 442

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++   NI I        ++  R++++++   GL PD+ +Y+++I+GLC +    EA +
Sbjct: 443 DPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASK 502

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            F EM E G       + T+ RG ++++
Sbjct: 503 LFREMDENGCTLNGCIYNTITRGFLRNN 530



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 137/303 (45%), Gaps = 15/303 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+  C +         L EM++  + P+VV++N +++ +C+          E  + 
Sbjct: 239 YNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCK----------EGKVT 288

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V D+M  RG+EP+V +++ ++  +    +   ++   + M  KG  P V +Y++++
Sbjct: 289 EAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLI 348

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI+ A  L GEM R  + P   TY+         +    A+ L+ +M     C
Sbjct: 349 NGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVA---C 405

Query: 182 --VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
             +PN+ +Y IL+        +     +   ++GS L PD+    + I G+C   + + A
Sbjct: 406 SQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAA 465

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
              F  +  KGL P   T+  +  GL +  +L    +L +++DE   T      N   + 
Sbjct: 466 RDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRG 525

Query: 300 YRR 302
           + R
Sbjct: 526 FLR 528



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 120/260 (46%), Gaps = 11/260 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C +NR+  A   L ++++ G +P+  T+  L+ G+            E  I  A 
Sbjct: 102 LINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGI----------YVEGKIGEAL 151

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +FD+M   G  PDV ++  +++   +      ++  L  M +K   P V  Y++++  L
Sbjct: 152 HLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSL 211

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C   ++ +A  L  EMV  G+ P   TYN          +      L  +M  D   +P+
Sbjct: 212 CKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMV-DSKIMPD 270

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + S+N ++       ++    ++ + +   G+ P++ +YT L+ G C   +  EA + F 
Sbjct: 271 VVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFD 330

Query: 245 EMIEKGLLPQKVTFETLYRG 264
            M+ KG +P  +++ TL  G
Sbjct: 331 TMVCKGCMPNVISYNTLING 350



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 107/241 (44%), Gaps = 11/241 (4%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           +M   G+ PN+ T ++L+N  C              +  A  V  ++   G +PD  +F+
Sbjct: 86  QMDSFGIPPNIYTLHILINSFCHL----------NRVGFAFSVLAKILKLGHQPDTATFT 135

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            ++       +   +L   + M  +G  P V TY +++  LC  G    A  LLG MV+ 
Sbjct: 136 TLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQK 195

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
              P+   YN         +    A  L+ +M   G+  P++ +YN LI     L     
Sbjct: 196 NCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGIS-PDIFTYNSLIHALCNLCEWKH 254

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
           V  + N++  S + PD+ S+  ++  LC++ K  EA     +MI++G+ P  VT+  L  
Sbjct: 255 VATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMD 314

Query: 264 G 264
           G
Sbjct: 315 G 315



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 25/204 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y +LI G+CKI RID A    GEM  + + P+ VTY+ L++G+C    L  +        
Sbjct: 344 YNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMV 403

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                + +  A  +   +    ++PD+   +I +    RA + +
Sbjct: 404 ACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELE 463

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + D  + +  KG+ P V TYS ++  LC  G +++A +L  EM  NG   +   YN   
Sbjct: 464 AARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTIT 523

Query: 157 KEYRGRKDANGAMKLYRQMKEDGL 180
           + +    + + A++L ++M   G 
Sbjct: 524 RGFLRNNETSRAIQLLQEMVARGF 547



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 91/234 (38%), Gaps = 4/234 (1%)

Query: 50  LHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG 109
            H       TI  A   F+ M      P    F+ +L   ++       L   + M   G
Sbjct: 32  FHSKSLHFNTIDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFG 91

Query: 110 ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAM 169
           I P + T   ++   C   R+  A  +L ++++ G  P   T+    +          A+
Sbjct: 92  IPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEAL 151

Query: 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
            L+ +M  +G   P++ +Y  LI     +        +   +      P++ +Y  +I  
Sbjct: 152 HLFDKMIGEGF-RPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDS 210

Query: 230 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           LC+ ++  EA   F EM+ KG+ P   T+ +L   L     L  W+ +   L+E
Sbjct: 211 LCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCN---LCEWKHVATLLNE 261


>gi|224107985|ref|XP_002314678.1| predicted protein [Populus trichocarpa]
 gi|222863718|gb|EEF00849.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  146 bits (369), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 142/278 (51%), Gaps = 11/278 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI+G+CK     +A + + EM + G  P+VV+Y+  +   C           +K  R
Sbjct: 229 FNILIHGYCKARMFVVARKIMEEMEKHGFHPDVVSYSCFIAAYCE----------QKDFR 278

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N E VFDEM+ +G +P+V +++ V+H   +A Q   +L+    MK  G  P    YSS++
Sbjct: 279 NVEAVFDEMQEKGCKPNVITYTTVMHALGKARQLNEALEVYEKMKRNGCLPDSKFYSSLI 338

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GRI+DA ++  +M + GVC +   YN              A+KL  +M+ D  C
Sbjct: 339 YVLSQSGRIKDAWDVFEDMEKQGVCRNLWVYNTMISSACAHSQGGSALKLLERMEGDS-C 397

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  L+ M      + +++ + + +  + +  DL +YT+L++  C   K + AC 
Sbjct: 398 KPDVKTYAPLLKMCCRRKSIKLLKFLLSHMFKNNVSVDLGTYTLLVNEFCRNGKLEHACF 457

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
           YF E + KG++P   TF+ L   L Q +M     +++K
Sbjct: 458 YFQEAVLKGMVPMVKTFKALVEELEQKNMKEMKEKIEK 495



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 113/268 (42%), Gaps = 18/268 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEM-IERGVEP-----NVVTYNVLLNGVCRRASLHPSER 55
           Y SL      + R+  A ++   + + RG+E      +    NVL++ + +         
Sbjct: 154 YVSLATASKVMRRLAKARKYKDAIDVFRGIEKYGASKDREALNVLMDALVK--------- 204

Query: 56  FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA 115
            E  + +A   F E +   I  D +SF+I++H Y +A    ++   +  M++ G  P V 
Sbjct: 205 -EGDVEDAHSAFLEFK-DCITLDSSSFNILIHGYCKARMFVVARKIMEEMEKHGFHPDVV 262

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           +YS  +   C      + E +  EM   G  P+  TY          +  N A+++Y +M
Sbjct: 263 SYSCFIAAYCEQKDFRNVEAVFDEMQEKGCKPNVITYTTVMHALGKARQLNEALEVYEKM 322

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           K +G C+P+   Y+ LI +     R+    +++ D++  G+  +L  Y  +I   C   +
Sbjct: 323 KRNG-CLPDSKFYSSLIYVLSQSGRIKDAWDVFEDMEKQGVCRNLWVYNTMISSACAHSQ 381

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYR 263
              A +    M      P   T+  L +
Sbjct: 382 GGSALKLLERMEGDSCKPDVKTYAPLLK 409



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 4/181 (2%)

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
           ++AT S V++ L    + +DA ++   + + G     E  N          D   A   +
Sbjct: 156 SLATASKVMRRLAKARKYKDAIDVFRGIEKYGASKDREALNVLMDALVKEGDVEDAHSAF 215

Query: 173 RQMKEDGLCVP-NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
            + K+   C+  +  S+NILI  +       + R+I  +++  G  PD+ SY+  I   C
Sbjct: 216 LEFKD---CITLDSSSFNILIHGYCKARMFVVARKIMEEMEKHGFHPDVVSYSCFIAAYC 272

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSE 291
           E++ ++     F EM EKG  P  +T+ T+   L ++  L     + +K+        S+
Sbjct: 273 EQKDFRNVEAVFDEMQEKGCKPNVITYTTVMHALGKARQLNEALEVYEKMKRNGCLPDSK 332

Query: 292 F 292
           F
Sbjct: 333 F 333


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  146 bits (369), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 139/282 (49%), Gaps = 11/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I G C   R+  A   L +M+ RG +P+VVTY VLL  VC+               
Sbjct: 148 YTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFG---------- 197

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V DEMR +G  P++ +++++++   R  +   + + LN +   G  P   +Y++V+
Sbjct: 198 QAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVL 257

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC+  R ED EEL  EM+     P+  T++   + +        A+++  QM   G C
Sbjct: 258 KGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG-C 316

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N    NI+I       R+D   +  N++   G  PD  SYT ++ GLC  ++W++A +
Sbjct: 317 AANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKE 376

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
              EM+ K   P +VTF T    L Q  ++     L +++ E
Sbjct: 377 LLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSE 418



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 132/286 (46%), Gaps = 14/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+++ G C   R +  E    EM+E+   PN VT+++L+   CR             + 
Sbjct: 253 YTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGG----------MVE 302

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V ++M   G   + T  +IV++   +  +   +   LN M   G  P   +Y++V+
Sbjct: 303 RAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVL 362

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC   R EDA+ELL EMVR    P+  T+N F      +     A  L  QM E G C
Sbjct: 363 KGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG-C 421

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+ +YN L+  F    R+D   E++  +      P+  +YT L+ GLC  ++   A +
Sbjct: 422 EVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAE 478

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              EM++K   P  VTF  L     Q  ++     L +++ E   T
Sbjct: 479 LLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCT 524



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 126/263 (47%), Gaps = 18/263 (6%)

Query: 12  INRIDMAE--RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           I R D+AE  R +     RG  P+V     L+  +CRR     + R    +R AE+    
Sbjct: 54  IARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAAR---VLRAAER---- 106

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN-FMKEKGICPTVATYSSVVKCLCSCG 128
               G   DV +++ ++  Y R  Q    LD     +    + P   TY+ +++ LC  G
Sbjct: 107 ---SGTAVDVFAYNTLVAGYCRYGQ----LDAARRLIASMPVAPDAYTYTPIIRGLCDRG 159

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           R+ +A  LL +M+  G  PS  TY    +          AM++  +M+  G C PN+ +Y
Sbjct: 160 RVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKG-CTPNIVTY 218

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N++I       R+D  RE  N +   G  PD  SYT ++ GLC  ++W++  + F EM+E
Sbjct: 219 NVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMME 278

Query: 249 KGLLPQKVTFETLYRGLIQSDML 271
           K  +P +VTF+ L R   +  M+
Sbjct: 279 KNCMPNEVTFDMLVRFFCRGGMV 301



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 139/280 (49%), Gaps = 14/280 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + + I   C+   I+ A   + +M E G E N+VTYN L+NG C           +  + 
Sbjct: 393 FNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFC----------VQGRVD 442

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F  M  +   P+  +++ +L     A +   + + L  M +K   P V T++ +V
Sbjct: 443 SALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLV 499

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +++A EL+ +M+ +G  P+  TYN          ++  A++L   +  +G+ 
Sbjct: 500 SFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGV- 558

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ +IG+    +R++   ++++ V+  G+ P    Y  ++  LC++     A  
Sbjct: 559 SPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAID 618

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +F  M+  G +P ++T+ TL  GL   D L+  R L ++L
Sbjct: 619 FFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLREL 658



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 15/192 (7%)

Query: 108 KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG 167
           +G  P V   + +++ LC  GR  DA  +L    R+G       YN     Y      + 
Sbjct: 72  RGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDA 131

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           A +L   M       P+ ++Y  +I       R+     + +D+   G  P + +YT+L+
Sbjct: 132 ARRLIASMP----VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLL 187

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             +C+   + +A +   EM  KG  P  VT+  +  G+ +   +   R    +L      
Sbjct: 188 EAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRL------ 241

Query: 288 FGSEFQNYHFKP 299
                 +Y F+P
Sbjct: 242 -----SSYGFQP 248


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  146 bits (369), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 139/282 (49%), Gaps = 11/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I G C   R+  A   L +M+ RG +P+VVTY VLL  VC+               
Sbjct: 148 YTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFG---------- 197

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V DEMR +G  P++ +++++++   R  +   + + LN +   G  P   +Y++V+
Sbjct: 198 QAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVL 257

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC+  R ED EEL  EM+     P+  T++   + +        A+++  QM   G C
Sbjct: 258 KGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG-C 316

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N    NI+I       R+D   +  N++   G  PD  SYT ++ GLC  ++W++A +
Sbjct: 317 AANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKE 376

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
              EM+ K   P +VTF T    L Q  ++     L +++ E
Sbjct: 377 LLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSE 418



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 132/286 (46%), Gaps = 14/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+++ G C   R +  E    EM+E+   PN VT+++L+   CR             + 
Sbjct: 253 YTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGG----------MVE 302

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V ++M   G   + T  +IV++   +  +   +   LN M   G  P   +Y++V+
Sbjct: 303 RAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVL 362

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC   R EDA+ELL EMVR    P+  T+N F      +     A  L  QM E G C
Sbjct: 363 KGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG-C 421

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+ +YN L+  F    R+D   E++  +      P+  +YT L+ GLC  ++   A +
Sbjct: 422 EVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAE 478

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              EM++K   P  VTF  L     Q  ++     L +++ E   T
Sbjct: 479 LLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCT 524



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 126/263 (47%), Gaps = 18/263 (6%)

Query: 12  INRIDMAE--RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           I R D+AE  R +     RG  P+V     L+  +CRR     + R    +R AE+    
Sbjct: 54  IARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAAR---VLRAAER---- 106

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN-FMKEKGICPTVATYSSVVKCLCSCG 128
               G   DV +++ ++  Y R  Q    LD     +    + P   TY+ +++ LC  G
Sbjct: 107 ---SGTAVDVFAYNTLVAGYCRYGQ----LDAARRLIASMPVAPDAYTYTPIIRGLCDRG 159

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           R+ +A  LL +M+  G  PS  TY    +          AM++  +M+  G C PN+ +Y
Sbjct: 160 RVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKG-CTPNIVTY 218

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N++I       R+D  RE  N +   G  PD  SYT ++ GLC  ++W++  + F EM+E
Sbjct: 219 NVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMME 278

Query: 249 KGLLPQKVTFETLYRGLIQSDML 271
           K  +P +VTF+ L R   +  M+
Sbjct: 279 KNCMPNEVTFDMLVRFFCRGGMV 301



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 139/280 (49%), Gaps = 14/280 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + + I   C+   I+ A   + +M E G E N+VTYN L+NG C           +  + 
Sbjct: 393 FNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFC----------VQGRVD 442

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F  M  +   P+  +++ +L     A +   + + L  M +K   P V T++ +V
Sbjct: 443 SALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLV 499

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +++A EL+ +M+ +G  P+  TYN          ++  A++L   +  +G+ 
Sbjct: 500 SFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGV- 558

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ +IG+    +R++   ++++ V+  G+ P    Y  ++  LC++     A  
Sbjct: 559 SPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAID 618

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +F  M+  G +P ++T+ TL  GL   D L+  R L ++L
Sbjct: 619 FFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLREL 658



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 15/192 (7%)

Query: 108 KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG 167
           +G  P V   + +++ LC  GR  DA  +L    R+G       YN     Y      + 
Sbjct: 72  RGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDA 131

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           A +L   M       P+ ++Y  +I       R+     + +D+   G  P + +YT+L+
Sbjct: 132 ARRLIASMP----VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLL 187

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             +C+   + +A +   EM  KG  P  VT+  +  G+ +   +   R    +L      
Sbjct: 188 EAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRL------ 241

Query: 288 FGSEFQNYHFKP 299
                 +Y F+P
Sbjct: 242 -----SSYGFQP 248


>gi|449511317|ref|XP_004163923.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 144/282 (51%), Gaps = 14/282 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ GW      + AE F  EMIE GV+P+VV+YN L++  C+           + + 
Sbjct: 216 FNILLSGW---KSSEEAEGFFDEMIEMGVKPDVVSYNCLVDVYCK----------NREMD 262

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KV  +MR   I  DV +++ ++       QP  + + L  MKE G  P VA Y++ +
Sbjct: 263 KAFKVVGKMRDEDIPADVITYTSIIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNATI 322

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C   R+ +A +LL EMV  G+ P+A TYN FF+ +    D   A  LYR+M + G C
Sbjct: 323 RNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNLFFRIFFWSNDLQSAWNLYRRMMDTG-C 381

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN  S   L+ +F    + +M  E+WND+   G G  +     L   LC+  K  EA  
Sbjct: 382 LPNTQSCLFLVRLFKKYEKEEMALELWNDMIQKGFGSYILVSEELFDLLCDLGKLIEAES 441

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            F++M++KG  P   +F+ +   +  ++     + L KK+D+
Sbjct: 442 CFLQMVDKGHKPSYTSFKRIKVLMELANKHEALQNLSKKMDD 483


>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g20300, mitochondrial; Flags: Precursor
 gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
           from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
           contains multiple PPR PF|01535 repeats [Arabidopsis
           thaliana]
 gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 151/287 (52%), Gaps = 12/287 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+L+ GWC+   I  AE+   EM   G+EPNV TY+++++ +CR             I
Sbjct: 257 VYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQ----------I 306

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  VF +M   G  P+  +F+ ++ V+ +A + +  L   N MK+ G  P   TY+ +
Sbjct: 307 SRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFL 366

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C    +E+A ++L  M++     +A T+N  F+    ++D NGA ++Y +M E   
Sbjct: 367 IEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMME-AK 425

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN  +YNIL+ MF+     DMV ++  ++    + P++++Y +L+   C    W  A 
Sbjct: 426 CEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAY 485

Query: 241 QYFVEMI-EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           + F EM+ EK L P    +E +   L ++  L+    L +K+ ++ +
Sbjct: 486 KLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKGL 532



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 132/285 (46%), Gaps = 12/285 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI  + +      A      M + G  P+ + ++++++ + R+          +   
Sbjct: 189 FTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRK----------RRAS 238

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+  FD ++ R  EPDV  ++ ++  + RA +   +      MK  GI P V TYS V+
Sbjct: 239 EAQSFFDSLKDR-FEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVI 297

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC CG+I  A ++  +M+ +G  P+A T+N   + +         +++Y QMK+ G C
Sbjct: 298 DALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLG-C 356

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN LI        ++   ++ N +       +  ++  +   + +K+    A +
Sbjct: 357 EPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHR 416

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            + +M+E    P  VT+  L R  + S       ++KK++D++ +
Sbjct: 417 MYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEV 461


>gi|449466251|ref|XP_004150840.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 144/282 (51%), Gaps = 14/282 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ GW      + AE F  EMIE GV+P+VV+YN L++  C+           + + 
Sbjct: 216 FNILLSGW---KSSEEAEGFFDEMIEMGVKPDVVSYNCLVDVYCK----------NREMD 262

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KV  +MR   I  DV +++ ++       QP  + + L  MKE G  P VA Y++ +
Sbjct: 263 KAFKVVGKMRDEDIPADVITYTSIIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNATI 322

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C   R+ +A +LL EMV  G+ P+A TYN FF+ +    D   A  LYR+M + G C
Sbjct: 323 RNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNLFFRIFFWSNDLQSAWNLYRRMMDTG-C 381

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN  S   L+ +F    + +M  E+WND+   G G  +     L   LC+  K  EA  
Sbjct: 382 LPNTQSCLFLVRLFKKYEKEEMALELWNDMIQKGFGSYILVSEELFDLLCDLGKLIEAES 441

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            F++M++KG  P   +F+ +   +  ++     + L KK+D+
Sbjct: 442 CFLQMVDKGHKPSYTSFKRIKVLMELANKHEALQNLSKKMDD 483


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 143/288 (49%), Gaps = 11/288 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I G C   R+  A   L +M++RG +P+VVTY VLL  VC+ +             
Sbjct: 144 YTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFG---------- 193

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V DEMR +G  P++ +++++++   R  +   + + LN +   G  P + +Y++V+
Sbjct: 194 EAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVL 253

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC+  R +D + L  EMV     P+  T++   + +        A+++ +QM + G C
Sbjct: 254 KGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHG-C 312

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN    NI+I       R+D   +  N++   G  PD  SYT ++ GLC   +W+ A +
Sbjct: 313 TPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKE 372

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
              EM+ K   P +VTF T    L Q  ++    +L + + E   + G
Sbjct: 373 LLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVG 420



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 134/286 (46%), Gaps = 18/286 (6%)

Query: 12  INRIDMAE--RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           I R D+AE  R +     RG  P+V     L+  +CRR     + R    +R AE     
Sbjct: 50  IARDDLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAAR---VLRTAE----- 101

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN-FMKEKGICPTVATYSSVVKCLCSCG 128
               G   DV +++ ++  Y R  +    LD     +    + P   TY+ +++ LC  G
Sbjct: 102 --ASGAPVDVFAYNTLVAGYCRYGR----LDAARRLIASMPVPPDAYTYTPIIRGLCDRG 155

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           R+ DA  LL +M++ G  PS  TY    +          AM +  +M+  G C PN+ +Y
Sbjct: 156 RVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKG-CTPNIVTY 214

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N++I       R+D  +EI N +   G  PD+ SYT ++ GLC  ++W +    F EM++
Sbjct: 215 NVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVD 274

Query: 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           K  +P +VTF+ L R   +  M+    ++ +++ +   T  +   N
Sbjct: 275 KKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCN 320



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 131/286 (45%), Gaps = 14/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+++ G C   R D  +    EM+++   PN VT+++L+   CR             + 
Sbjct: 249 YTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGG----------MVE 298

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V  +M   G  P+ T  +IV++   +  +   + D LN M   G  P   +Y++V+
Sbjct: 299 RAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVL 358

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  GR E A+ELL EMVR    P+  T+N F      +     A+KL   M E G C
Sbjct: 359 RGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYG-C 417

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              + +YN L+  F    R+D   E++N++      P+  +YT L+ GLC  ++   A +
Sbjct: 418 SVGIVTYNALVHGFCVQGRVDSALELFNNLPCE---PNTITYTTLLTGLCHAERLDAAAE 474

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
               MI+K      VTF  L     Q   +     L  ++ E   T
Sbjct: 475 LLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCT 520



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 118/266 (44%), Gaps = 14/266 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+  +C+   ++ A + L +M + G  PN    N+++N +C++            + 
Sbjct: 284 FDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGR----------VD 333

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A    + M + G  PD  S++ VL    RA + + + + L  M  K   P   T+++ +
Sbjct: 334 DAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFI 393

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G IE A +L+  M   G      TYN     +  +   + A++L+  +     C
Sbjct: 394 CILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP----C 449

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +Y  L+       R+D   E+   +       +  ++ +L+   C+K   +EA +
Sbjct: 450 EPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAME 509

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +M+E G  P  +TF TL  G+ +
Sbjct: 510 LVNQMMEHGCTPNLITFNTLLDGITK 535



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/306 (20%), Positives = 142/306 (46%), Gaps = 31/306 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           YT+++ G C+  R + A+  L EM+ +   PN VT+N  +  +C++  +  + +      
Sbjct: 354 YTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMP 413

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +  + +A ++F+ +     EP+  +++ +L     A +  
Sbjct: 414 EYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPC---EPNTITYTTLLTGLCHAERLD 470

Query: 97  LSLDKLNFMKEKGICPTVA-TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
            + + L  M +K  CP  A T++ +V   C  G +E+A EL+ +M+ +G  P+  T+N  
Sbjct: 471 AAAELLAGMIQKD-CPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTL 529

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                   ++  A++L   +   G+ +  + +Y+ ++ +    +R +   ++ + V+  G
Sbjct: 530 LDGITKDCNSEEALELLHGLVSKGVSLDTI-TYSSVVDVLSREDRTEEAIQMLHAVQDMG 588

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           + P +  Y  ++  LC++ +  +A  +F  M+  G +P + T+  L  GL    +L+  R
Sbjct: 589 MRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAR 648

Query: 276 RLKKKL 281
            +  +L
Sbjct: 649 YVLSEL 654



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 108/255 (42%), Gaps = 46/255 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G C   R+D A   L  MI++    N VT+NVL++  C++            + 
Sbjct: 456 YTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKG----------FVE 505

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ ++M   G  P++ +F+ +L   ++    + +L+ L+ +  KG+     TYSSVV
Sbjct: 506 EAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVV 565

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L    R E+A ++L  +   G+ P    YN        R + + A+  +  M  +G C
Sbjct: 566 DVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNG-C 624

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN  +Y I                                   LI GL  +   KEA  
Sbjct: 625 MPNESTYII-----------------------------------LIEGLAHEGLLKEARY 649

Query: 242 YFVEMIEKGLLPQKV 256
              E+  KG+L + +
Sbjct: 650 VLSELYAKGVLSKSL 664


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 146/271 (53%), Gaps = 12/271 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y +L+  +C+   +D AER +  M E G  +PN+VT+N ++NG+C+      + R E   
Sbjct: 190 YNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCK------AGRME--- 240

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A KVFDEM   G+ PDV S++ +L  Y +      SL   + M ++G+ P V T++S+
Sbjct: 241 -GARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSL 299

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G +E A  L+ +M   G+  +  T+      +  +   + A+    +M++ G+
Sbjct: 300 IHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGI 359

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++  YN LI  +  L RMD+ RE+  +++   + PD+ +Y+ +I G C+      A 
Sbjct: 360 -QPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAF 418

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           Q   +M++KG+LP  +T+ +L RGL +   L
Sbjct: 419 QLNQKMLKKGVLPDAITYSSLIRGLCEEKRL 449



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 142/265 (53%), Gaps = 15/265 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + S++ G CK  R++ A +   EM+  G+ P+VV+YN LL+G C+   LH S        
Sbjct: 226 FNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESL------- 278

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               VF EM  RG+ PDV +F+ ++H   +A   + ++  +  M+E+G+     T+++++
Sbjct: 279 ---AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALI 335

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDG 179
              C  G ++DA   + EM + G+ PS   YN     Y   GR D   A +L R+M E  
Sbjct: 336 DGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDL--ARELIREM-EAK 392

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              P++ +Y+ +I  +  +  +D   ++   +   G+ PD  +Y+ LI GLCE+++  +A
Sbjct: 393 RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA 452

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRG 264
           C+ F  M++ G+ P + T+ TL  G
Sbjct: 453 CELFENMLQLGVQPDEFTYTTLIDG 477



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 135/260 (51%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSLI+  CK   ++ A   + +M ERG+  N VT+  L++G C++  L           
Sbjct: 296 FTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLD---------- 345

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A    +EMR  GI+P V  ++ +++ Y +  +  L+ + +  M+ K + P V TYS+++
Sbjct: 346 DALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTII 405

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G ++ A +L  +M++ GV P A TY+   +     K  N A +L+  M + G+ 
Sbjct: 406 SGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGV- 464

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y  LI        ++    + +++   G+ PD+ +Y++LI+GL +  + KEA +
Sbjct: 465 QPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHR 524

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              ++  +  +P  + ++ L
Sbjct: 525 LLFKLYHEDPVPDNIKYDAL 544



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 112/213 (52%), Gaps = 1/213 (0%)

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           G  P V +++ VL   S A  P  +   L+ M   G+ P V TY+ +V+ LC+ GR+E+A
Sbjct: 113 GYAPSVPAYNAVLLALSDASLPS-ARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             ++G+M   G  P+A TYN     +    + +GA ++   M+E+G   PN+ ++N ++ 
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
                 RM+  R++++++   GL PD+ SY  L+ G C+     E+   F EM ++GL+P
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVP 291

Query: 254 QKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             VTF +L     ++  L     L  ++ E  +
Sbjct: 292 DVVTFTSLIHATCKAGNLEQAVALVAQMRERGL 324



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 136/284 (47%), Gaps = 17/284 (5%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A RFL  M+  GV PNV TYN+L+  +C R       R E+ +     V  +MR  G  P
Sbjct: 136 ARRFLSSMLRHGVAPNVYTYNILVRALCARG------RLEEAV----GVVGDMRGAGCAP 185

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSVVKCLCSCGRIEDAEEL 136
           +  +++ ++  + RA +   +   ++ M+E+G   P + T++S+V  LC  GR+E A ++
Sbjct: 186 NAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKV 245

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
             EMVR G+ P   +YN     Y      + ++ ++ +M + GL VP++ ++  LI    
Sbjct: 246 FDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGL-VPDVVTFTSLIHATC 304

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
               ++    +   ++  GL  +  ++T LI G C+K    +A     EM + G+ P  V
Sbjct: 305 KAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVV 364

Query: 257 TFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
            +  L  G  +   +   R L      K++  + +T+ +    Y
Sbjct: 365 CYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGY 408



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 130/284 (45%), Gaps = 24/284 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK+ R+D+A   + EM  + V+P+VVTY+ +++G C+  +L           
Sbjct: 366 YNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLD---------- 415

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  +M  +G+ PD  ++S ++       +   + +    M + G+ P   TY++++
Sbjct: 416 SAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLI 475

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETY----NCFFKEYRGRKDANGAMKLYRQ--- 174
              C  G +E A  L  EM+R GV P   TY    N   K  R ++      KLY +   
Sbjct: 476 DGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPV 535

Query: 175 ---MKEDGLCV----PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
              +K D L +        S   L+  F     M    +++  +       D   Y++LI
Sbjct: 536 PDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILI 595

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           HG C     ++A  +  +M+  G  P   +  +L RGL +  M+
Sbjct: 596 HGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMV 639



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 87/219 (39%), Gaps = 40/219 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           YT+LI G CK   ++ A     EMI +GV P+VVTY+VL+NG+ + A    + R      
Sbjct: 471 YTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLY 530

Query: 57  -----------------------------------EKTIRNAEKVFDEMRVRGIEPDVTS 81
                                              +  ++ A+KV+  M  R  + D + 
Sbjct: 531 HEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSV 590

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           +SI++H + R    + +L     M   G  P   +  S+V+ L   G + +A+  + +++
Sbjct: 591 YSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLL 650

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
                  AE         R   + +  + +   M  DGL
Sbjct: 651 TCCPLADAEASKALIDLNRKEGNVDALIDVLCGMARDGL 689


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 144/271 (53%), Gaps = 12/271 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y +L+  +C+   +D AER +  M E G  +PN+VT+N ++NG+C+   +          
Sbjct: 48  YNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRME--------- 98

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A KVFDEM   G+ PDV S++ +L  Y +      SL   + M ++G+ P V T++S+
Sbjct: 99  -GARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSL 157

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G +E A  L+ +M   G+  +  T+      +  +   + A+    +M++ G+
Sbjct: 158 IHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGI 217

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++  YN LI  +  L RMD+ RE+  +++   + PD+ +Y+ +I G C+      A 
Sbjct: 218 -QPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAF 276

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           Q   +M++KG+LP  +T+ +L RGL +   L
Sbjct: 277 QLNQKMLKKGVLPDAITYSSLIRGLCEEKRL 307



 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 142/265 (53%), Gaps = 15/265 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + S++ G CK  R++ A +   EM+  G+ P+VV+YN LL+G C+   LH S        
Sbjct: 84  FNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESL------- 136

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               VF EM  RG+ PDV +F+ ++H   +A   + ++  +  M+E+G+     T+++++
Sbjct: 137 ---AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALI 193

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDG 179
              C  G ++DA   + EM + G+ PS   YN     Y   GR D   A +L R+M E  
Sbjct: 194 DGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDL--ARELIREM-EAK 250

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              P++ +Y+ +I  +  +  +D   ++   +   G+ PD  +Y+ LI GLCE+++  +A
Sbjct: 251 RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA 310

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRG 264
           C+ F  M++ G+ P + T+ TL  G
Sbjct: 311 CELFENMLQLGVQPDEFTYTTLIDG 335



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 135/260 (51%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSLI+  CK   ++ A   + +M ERG+  N VT+  L++G C++  L           
Sbjct: 154 FTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLD---------- 203

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A    +EMR  GI+P V  ++ +++ Y +  +  L+ + +  M+ K + P V TYS+++
Sbjct: 204 DALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTII 263

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G ++ A +L  +M++ GV P A TY+   +     K  N A +L+  M + G+ 
Sbjct: 264 SGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGV- 322

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y  LI        ++    + +++   G+ PD+ +Y++LI+GL +  + KEA +
Sbjct: 323 QPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHR 382

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              ++  +  +P  + ++ L
Sbjct: 383 LLFKLYHEDPVPDNIKYDAL 402



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 132/277 (47%), Gaps = 17/277 (6%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M+  GV PNV TYN+L+  +C R       R E+ +     V  +MR  G  P+  +++ 
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARG------RLEEAV----GVVGDMRGAGCAPNAVTYNT 50

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
           ++  + RA +   +   ++ M+E+G   P + T++S+V  LC  GR+E A ++  EMVR 
Sbjct: 51  LVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVRE 110

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+ P   +YN     Y      + ++ ++ +M + GL VP++ ++  LI        ++ 
Sbjct: 111 GLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGL-VPDVVTFTSLIHATCKAGNLEQ 169

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
              +   ++  GL  +  ++T LI G C+K    +A     EM + G+ P  V +  L  
Sbjct: 170 AVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALIN 229

Query: 264 GLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           G  +   +   R L      K++  + +T+ +    Y
Sbjct: 230 GYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGY 266



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 129/284 (45%), Gaps = 24/284 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK+ R+D+A   + EM  + V+P+VVTY+ +++G C+  +L  + +  +   
Sbjct: 224 YNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQ--- 280

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                  +M  +G+ PD  ++S ++       +   + +    M + G+ P   TY++++
Sbjct: 281 -------KMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLI 333

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETY----NCFFKEYRGRKDANGAMKLYRQ--- 174
              C  G +E A  L  EM+R GV P   TY    N   K  R ++      KLY +   
Sbjct: 334 DGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPV 393

Query: 175 ---MKEDGLCV----PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
              +K D L +        S   L+  F     M    +++  +       D   Y++LI
Sbjct: 394 PDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILI 453

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           HG C     ++A  +  +M+  G  P   +  +L RGL +  M+
Sbjct: 454 HGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMV 497



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 44/221 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           YT+LI G CK   ++ A     EMI +GV P+VVTY+VL+NG+ + A    + R      
Sbjct: 329 YTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLY 388

Query: 57  -----------------------------------EKTIRNAEKVFDEMRVRGIEPDVTS 81
                                              +  ++ A+KV+  M  R  + D + 
Sbjct: 389 HEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSV 448

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           +SI++H + R    + +L     M   G  P   +  S+V+ L   G + +A+  + +++
Sbjct: 449 YSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLL 508

Query: 142 RNGVCP--SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
               CP   AE         R   + +  + +   M  DGL
Sbjct: 509 T--CCPLADAEASKALIDLNRKEGNVDALIDVLCGMARDGL 547


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 146/285 (51%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI+G    N+   A   +  M++RG +PN+VTY V++NG+C+R              
Sbjct: 155 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDL--------- 205

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + ++M    IE DV  F+ ++    +      +L+    M+ KGI P V TYSS++
Sbjct: 206 -ALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 264

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLCS GR  DA +LL +M+   + P+  T+N     +        A KLY  M +  + 
Sbjct: 265 SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI- 323

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN L+  F   +R+D  ++++  +      PD+ +Y  LI G C+ ++ ++  +
Sbjct: 324 DPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTE 383

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F EM  +GL+   VT+ TL +GL         +++ K++  + +
Sbjct: 384 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 428



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 148/301 (49%), Gaps = 11/301 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI   C   R   A + L +MIE+ + PN+VT+N L++   +          E    
Sbjct: 260 YSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK----------EGKFV 309

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK++D+M  R I+PD+ +++ +++ +    +   +     FM  K   P V TY++++
Sbjct: 310 EAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLI 369

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R+ED  EL  EM   G+     TY    +      D + A K+++QM  DG+ 
Sbjct: 370 KGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV- 428

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+IL+       +++   E+++ ++ S +  D+  YT +I G+C+  K  +   
Sbjct: 429 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWD 488

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYR 301
            F  +  KG+ P  VT+ T+  GL    +L+    L KK+ E+     S   N   + + 
Sbjct: 489 LFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHL 548

Query: 302 R 302
           R
Sbjct: 549 R 549



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 135/302 (44%), Gaps = 46/302 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI  +C+ ++I +A   LG+M++ G EP++VT + LLNG C            K I 
Sbjct: 85  YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCH----------GKRIS 134

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLH-----------------VYSRAHQPQ-------- 96
           +A  + D+M   G  PD  +F+ ++H                 +  R  QP         
Sbjct: 135 DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVV 194

Query: 97  ----------LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                     L+L+ LN M+   I   V  +++++  LC    ++DA  L  EM   G+ 
Sbjct: 195 NGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIR 254

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+  TY+            + A +L   M E  +  PN+ ++N LI  F+   +     +
Sbjct: 255 PNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN-PNLVTFNALIDAFVKEGKFVEAEK 313

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +++D+    + PD+ +Y  L++G C   +  +A Q F  M+ K   P  VT+ TL +G  
Sbjct: 314 LYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFC 373

Query: 267 QS 268
           +S
Sbjct: 374 KS 375



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 134/300 (44%), Gaps = 18/300 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +  L+    K+ + D+    LGE ++R  +   + TYN+L+N  CRR+           I
Sbjct: 50  FNKLLSAIAKMKKFDVVIS-LGEKMQRLEIVHGLYTYNILINCFCRRSQ----------I 98

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +  +M   G EP + + S +L+ Y    +   ++  ++ M E G  P   T++++
Sbjct: 99  SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTL 158

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L    +  +A  L+  MV+ G  P+  TY         R D + A+ L  +M E   
Sbjct: 159 IHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKM-EAAK 217

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              ++  +N +I        +D    ++ +++  G+ P++ +Y+ LI  LC   +W +A 
Sbjct: 218 IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDAS 277

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           Q   +MIEK + P  VTF  L    ++        +L     K+ +D +  T+ S    +
Sbjct: 278 QLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGF 337



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 90/176 (51%), Gaps = 10/176 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G       D A++   +M+  GV P+++TY++LL+G+C    L           
Sbjct: 400 YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE---------- 449

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +VFD M+   I+ D+  ++ ++    +A +     D    +  KG+ P V TY++++
Sbjct: 450 KALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 509

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
             LCS   +++A  LL +M  +G  P++ TYN   + +    D   + +L R+M+ 
Sbjct: 510 SGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 565



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 1/137 (0%)

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           +++DA  L G MV++   PS   +N         K  +  + L  +M+   + V  +++Y
Sbjct: 27  KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEI-VHGLYTY 85

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           NILI  F   +++ +   +   +   G  P + + + L++G C  ++  +A     +M+E
Sbjct: 86  NILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE 145

Query: 249 KGLLPQKVTFETLYRGL 265
            G  P  +TF TL  GL
Sbjct: 146 MGYRPDTITFTTLIHGL 162



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 13/120 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT++I G CK  ++D        +  +GV+PNVVTYN +++G+C +          + +
Sbjct: 469 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK----------RLL 518

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  +  +M+  G  P+  +++ ++  + R      S + +  M+    C  V   S++
Sbjct: 519 QEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS---CRFVGDASTI 575


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 142/297 (47%), Gaps = 44/297 (14%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI   C++N +D +   LG+M + G+ P+ +T+N L+NG+C           E  I+ A 
Sbjct: 134 LINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCN----------EGKIKEAV 183

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           ++F+EM  RG EP+V S++ V++   +     +++D    M++ G  P V TYS+++  L
Sbjct: 184 ELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSL 243

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE------- 177
           C    + DA E L EMV  G+ P+  TYN     +      N A +L+++M         
Sbjct: 244 CKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNT 303

Query: 178 -------DGLCV--------------------PNMHSYNILIGMFMALNRMDMVREIWND 210
                  DGLC                     P++ +YN L+  +     M+  ++++  
Sbjct: 304 VTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEI 363

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           +   G  P   SY +LI+G C+ ++  EA     EM  K L P  VT+ TL +GL Q
Sbjct: 364 MIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQ 420



 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 143/320 (44%), Gaps = 46/320 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G C   +I  A     EM++RG EPNV++Y  ++NG+C+  +            
Sbjct: 166 FNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGN----------TS 215

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  VF +M   G +P+V ++S ++    +      +++ L+ M E+GI P V TY+S+V
Sbjct: 216 MAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIV 275

Query: 122 KCLCSCGRIEDAEELLGEMV-----------------------------------RNGVC 146
              C+ G++ +A  L  EMV                                     GV 
Sbjct: 276 HGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVE 335

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P   TYN     Y  ++  N A K++  M   G C P  HSYNILI  +    RMD  + 
Sbjct: 336 PDISTYNALMDGYCLQRLMNEAKKVFEIMIRKG-CAPGAHSYNILINGYCKSRRMDEAKS 394

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +  ++    L PD  +Y+ L+ GLC+  + KEA   F EM   G  P  VT+  L  G  
Sbjct: 395 LLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFC 454

Query: 267 QSDMLRTWRRLKKKLDEESI 286
           +   L    +L K + E+ +
Sbjct: 455 KHGHLDEALKLLKSMKEKKL 474



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 154/302 (50%), Gaps = 28/302 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------------- 48
           Y S+++G+C + +++ A R   EM+ R V PN VT+ +L++G+C+               
Sbjct: 271 YNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMT 330

Query: 49  ------------SLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                       +L      ++ +  A+KVF+ M  +G  P   S++I+++ Y ++ +  
Sbjct: 331 EKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMD 390

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L  M  K + P   TYS++++ LC  GR ++A  L  EM   G  P+  TY    
Sbjct: 391 EAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILL 450

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSG 215
             +      + A+KL + MKE  L  PN+  Y ILI GMF+A  ++++ +E+++ + G G
Sbjct: 451 DGFCKHGHLDEALKLLKSMKEKKL-EPNIVHYTILIEGMFIA-GKLEVAKELFSKLFGDG 508

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
             PD+ +YT++I GL ++    EA   F +M + G LP   ++  + +G +Q+    T  
Sbjct: 509 TRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAI 568

Query: 276 RL 277
           RL
Sbjct: 569 RL 570



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 132/272 (48%), Gaps = 11/272 (4%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           +D A      M+     P+VV +   L    ++          K       + ++M +  
Sbjct: 74  VDDALASFYRMVRINPRPSVVEFGKFLGSFAKK----------KQYSTVVSLCNQMDLFR 123

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           +  +V S +I+++   R +    S+  L  M + GI P   T+++++  LC+ G+I++A 
Sbjct: 124 VTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAV 183

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           EL  EMV+ G  P+  +Y           + + A+ ++++M+++G C PN+ +Y+ +I  
Sbjct: 184 ELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNG-CKPNVVTYSTIIDS 242

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                 ++   E  +++   G+ P++ +Y  ++HG C   +  EA + F EM+ + ++P 
Sbjct: 243 LCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPN 302

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            VTF  L  GL +  M+   R + + + E+ +
Sbjct: 303 TVTFTILVDGLCKEGMVSEARLVFETMTEKGV 334



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 99/193 (51%), Gaps = 11/193 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++L+ G C++ R   A     EM   G  PN+VTY +LL+G C+   L           
Sbjct: 411 YSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLD---------- 460

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+   M+ + +EP++  ++I++     A + +++ +  + +   G  P + TY+ ++
Sbjct: 461 EALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMI 520

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K L   G  ++A +L  +M  +G  P++ +YN   + +   +D++ A++L  +M      
Sbjct: 521 KGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFS 580

Query: 182 VPNMHSYNILIGM 194
           V N+ ++ +L+ +
Sbjct: 581 V-NLSTFQMLLDL 592


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 146/285 (51%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI+G    N+   A   +  M++RG +PN+VTY V++NG+C+R              
Sbjct: 193 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDL--------- 243

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + ++M    IE DV  F+ ++    +      +L+    M+ KGI P V TYSS++
Sbjct: 244 -ALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 302

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLCS GR  DA +LL +M+   + P+  T+N     +        A KLY  M +  + 
Sbjct: 303 SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI- 361

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN L+  F   +R+D  ++++  +      PD+ +Y  LI G C+ ++ ++  +
Sbjct: 362 DPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTE 421

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F EM  +GL+   VT+ TL +GL         +++ K++  + +
Sbjct: 422 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 466



 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 148/301 (49%), Gaps = 11/301 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI   C   R   A + L +MIE+ + PN+VT+N L++   +          E    
Sbjct: 298 YSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK----------EGKFV 347

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK++D+M  R I+PD+ +++ +++ +    +   +     FM  K   P V TY++++
Sbjct: 348 EAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLI 407

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R+ED  EL  EM   G+     TY    +      D + A K+++QM  DG+ 
Sbjct: 408 KGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV- 466

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+IL+       +++   E+++ ++ S +  D+  YT +I G+C+  K  +   
Sbjct: 467 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWD 526

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYR 301
            F  +  KG+ P  VT+ T+  GL    +L+    L KK+ E+     S   N   + + 
Sbjct: 527 LFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHL 586

Query: 302 R 302
           R
Sbjct: 587 R 587



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 135/302 (44%), Gaps = 46/302 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI  +C+ ++I +A   LG+M++ G EP++VT + LLNG C            K I 
Sbjct: 123 YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCH----------GKRIS 172

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLH-----------------VYSRAHQPQ-------- 96
           +A  + D+M   G  PD  +F+ ++H                 +  R  QP         
Sbjct: 173 DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVV 232

Query: 97  ----------LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                     L+L+ LN M+   I   V  +++++  LC    ++DA  L  EM   G+ 
Sbjct: 233 NGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIR 292

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+  TY+            + A +L   M E  +  PN+ ++N LI  F+   +     +
Sbjct: 293 PNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN-PNLVTFNALIDAFVKEGKFVEAEK 351

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +++D+    + PD+ +Y  L++G C   +  +A Q F  M+ K   P  VT+ TL +G  
Sbjct: 352 LYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFC 411

Query: 267 QS 268
           +S
Sbjct: 412 KS 413



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 134/300 (44%), Gaps = 18/300 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +  L+    K+ + D+    LGE ++R  +   + TYN+L+N  CRR+           I
Sbjct: 88  FNKLLSAIAKMKKFDVVIS-LGEKMQRLEIVHGLYTYNILINCFCRRSQ----------I 136

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +  +M   G EP + + S +L+ Y    +   ++  ++ M E G  P   T++++
Sbjct: 137 SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTL 196

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L    +  +A  L+  MV+ G  P+  TY         R D + A+ L  +M E   
Sbjct: 197 IHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKM-EAAK 255

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              ++  +N +I        +D    ++ +++  G+ P++ +Y+ LI  LC   +W +A 
Sbjct: 256 IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDAS 315

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           Q   +MIEK + P  VTF  L    ++        +L     K+ +D +  T+ S    +
Sbjct: 316 QLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGF 375



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 90/176 (51%), Gaps = 10/176 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G       D A++   +M+  GV P+++TY++LL+G+C    L           
Sbjct: 438 YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE---------- 487

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +VFD M+   I+ D+  ++ ++    +A +     D    +  KG+ P V TY++++
Sbjct: 488 KALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 547

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
             LCS   +++A  LL +M  +G  P++ TYN   + +    D   + +L R+M+ 
Sbjct: 548 SGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 603



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 1/137 (0%)

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           +++DA  L G MV++   PS   +N         K  +  + L  +M+   + V  +++Y
Sbjct: 65  KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEI-VHGLYTY 123

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           NILI  F   +++ +   +   +   G  P + + + L++G C  ++  +A     +M+E
Sbjct: 124 NILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE 183

Query: 249 KGLLPQKVTFETLYRGL 265
            G  P  +TF TL  GL
Sbjct: 184 MGYRPDTITFTTLIHGL 200



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 13/120 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT++I G CK  ++D        +  +GV+PNVVTYN +++G+C +          + +
Sbjct: 507 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK----------RLL 556

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  +  +M+  G  P+  +++ ++  + R      S + +  M+    C  V   S++
Sbjct: 557 QEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS---CRFVGDASTI 613


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 146/271 (53%), Gaps = 12/271 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y +L+  +C+   +D AER +  M E G  +PN+VT+N ++NG+C+      + R E   
Sbjct: 190 YNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCK------AGRME--- 240

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A KVFDEM   G+ PDV S++ +L  Y +      SL   + M ++G+ P V T++S+
Sbjct: 241 -GARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSL 299

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G +E A  L+ +M   G+  +  T+      +  +   + A+    +M++ G+
Sbjct: 300 IHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGI 359

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++  YN LI  +  L RMD+ RE+  +++   + PD+ +Y+ +I G C+      A 
Sbjct: 360 -QPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAF 418

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           Q   +M++KG+LP  +T+ +L RGL +   L
Sbjct: 419 QLNQKMLKKGVLPDAITYSSLIRGLCEEKRL 449



 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 142/265 (53%), Gaps = 15/265 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + S++ G CK  R++ A +   EM+  G+ P+VV+YN LL+G C+   LH S        
Sbjct: 226 FNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESL------- 278

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               VF EM  RG+ PDV +F+ ++H   +A   + ++  +  M+E+G+     T+++++
Sbjct: 279 ---AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALI 335

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDG 179
              C  G ++DA   + EM + G+ PS   YN     Y   GR D   A +L R+M E  
Sbjct: 336 DGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDL--ARELIREM-EAK 392

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              P++ +Y+ +I  +  +  +D   ++   +   G+ PD  +Y+ LI GLCE+++  +A
Sbjct: 393 RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA 452

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRG 264
           C+ F  M++ G+ P + T+ TL  G
Sbjct: 453 CELFENMLQLGVQPDEFTYTTLIDG 477



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 135/260 (51%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSLI+  CK   ++ A   + +M ERG+  N VT+  L++G C++  L           
Sbjct: 296 FTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLD---------- 345

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A    +EMR  GI+P V  ++ +++ Y +  +  L+ + +  M+ K + P V TYS+++
Sbjct: 346 DALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTII 405

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G ++ A +L  +M++ GV P A TY+   +     K  N A +L+  M + G+ 
Sbjct: 406 SGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGV- 464

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y  LI        ++    + +++   G+ PD+ +Y++LI+GL +  + KEA +
Sbjct: 465 QPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHR 524

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              ++  +  +P  + ++ L
Sbjct: 525 LLFKLYHEDPVPDNIKYDAL 544



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 112/213 (52%), Gaps = 1/213 (0%)

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           G  P V +++ VL   S A  P  +   L+ M   G+ P V TY+ +V+ LC+ GR+E+A
Sbjct: 113 GYAPSVPAYNAVLLALSDASLPS-ARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             ++G+M   G  P+A TYN     +    + +GA ++   M+E+G   PN+ ++N ++ 
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
                 RM+  R++++++   GL PD+ SY  L+ G C+     E+   F EM ++GL+P
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVP 291

Query: 254 QKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             VTF +L     ++  L     L  ++ E  +
Sbjct: 292 DVVTFTSLIHATCKAGNLEQAVALVAQMRERGL 324



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 136/284 (47%), Gaps = 17/284 (5%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A RFL  M+  GV PNV TYN+L+  +C R       R E+ +     V  +MR  G  P
Sbjct: 136 ARRFLSSMLRHGVAPNVYTYNILVRALCARG------RLEEAV----GVVGDMRGAGCAP 185

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSVVKCLCSCGRIEDAEEL 136
           +  +++ ++  + RA +   +   ++ M+E+G   P + T++S+V  LC  GR+E A ++
Sbjct: 186 NAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKV 245

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
             EMVR G+ P   +YN     Y      + ++ ++ +M + GL VP++ ++  LI    
Sbjct: 246 FDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGL-VPDVVTFTSLIHATC 304

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
               ++    +   ++  GL  +  ++T LI G C+K    +A     EM + G+ P  V
Sbjct: 305 KAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVV 364

Query: 257 TFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
            +  L  G  +   +   R L      K++  + +T+ +    Y
Sbjct: 365 CYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGY 408



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 130/284 (45%), Gaps = 24/284 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK+ R+D+A   + EM  + V+P+VVTY+ +++G C+  +L           
Sbjct: 366 YNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLD---------- 415

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  +M  +G+ PD  ++S ++       +   + +    M + G+ P   TY++++
Sbjct: 416 SAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLI 475

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETY----NCFFKEYRGRKDANGAMKLYRQ--- 174
              C  G +E A  L  EM+R GV P   TY    N   K  R ++      KLY +   
Sbjct: 476 DGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPV 535

Query: 175 ---MKEDGLCV----PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
              +K D L +        S   L+  F     M    +++  +       D   Y++LI
Sbjct: 536 PDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILI 595

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           HG C     ++A  +  +M+  G  P   +  +L RGL +  M+
Sbjct: 596 HGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMV 639



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 42/190 (22%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           YT+LI G CK   ++ A     EMI +GV P+VVTY+VL+NG+ + A    + R      
Sbjct: 471 YTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLY 530

Query: 57  -----------------------------------EKTIRNAEKVFDEMRVRGIEPDVTS 81
                                              +  ++ A+KV+  M  R  + D + 
Sbjct: 531 HEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSV 590

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           +SI++H + R    + +L     M   G  P   +  S+V+ L   G + +A+  + +++
Sbjct: 591 YSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLL 650

Query: 142 RNGVCPSAET 151
               CP A+ 
Sbjct: 651 T--CCPLADA 658


>gi|357480939|ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512090|gb|AES93713.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/271 (31%), Positives = 137/271 (50%), Gaps = 11/271 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI GWCK+   + A + + E  E G EP+V TYN  +   C           +K  R
Sbjct: 318 FNILINGWCKVRNFEKARKVMEERKEHGFEPDVFTYNNFIESYCH----------DKDFR 367

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             ++V +EMR  G  P+  +++I+L  Y +A Q   +L++   MK+ GI P    YSS++
Sbjct: 368 KVDEVLEEMRGNGCPPNAVTYTILLLGYGKAGQLSKALEEYERMKKDGIVPDTPFYSSLM 427

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR++DA E+  +M + GV     TYN              A++L ++M+E   C
Sbjct: 428 YILGKAGRLKDACEVFDDMPKQGVVRDVVTYNTMISTACAHSKEETALRLLKEMEETS-C 486

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ L+ M     RM +++ + + +    L PD  +YT+L+  L    K  EAC 
Sbjct: 487 KPDLQTYHPLLKMCCKKKRMKVLKFLLDHMFKHDLCPDRGTYTLLVQSLSNSGKLVEACT 546

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
           +F EM+ KG  P + T + L R L    ML+
Sbjct: 547 FFEEMVSKGFTPMETTVKLLTRKLEIKSMLK 577



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 115/244 (47%), Gaps = 6/244 (2%)

Query: 55  RFEKTIRNAEKV--FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP 112
           RF K  R+ + V  F  M   G+E D  + + +L    +    +++ + L+  K   +  
Sbjct: 255 RFAKAQRHEDAVEAFRGMGKYGVEKDTAALNKLLDALVKGQSIEIAHNVLDEFKS-SVPL 313

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
           +  +++ ++   C     E A +++ E   +G  P   TYN F + Y   KD     ++ 
Sbjct: 314 SSPSFNILINGWCKVRNFEKARKVMEERKEHGFEPDVFTYNNFIESYCHDKDFRKVDEVL 373

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
            +M+ +G C PN  +Y IL+  +    ++    E +  +K  G+ PD   Y+ L++ L +
Sbjct: 374 EEMRGNG-CPPNAVTYTILLLGYGKAGQLSKALEEYERMKKDGIVPDTPFYSSLMYILGK 432

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEF 292
             + K+AC+ F +M ++G++   VT+ T+           T  RL K+++E S     + 
Sbjct: 433 AGRLKDACEVFDDMPKQGVVRDVVTYNTMISTACAHSKEETALRLLKEMEETSCK--PDL 490

Query: 293 QNYH 296
           Q YH
Sbjct: 491 QTYH 494


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 143/269 (53%), Gaps = 11/269 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++T+L+   CK   + +A   +  MI+RGVEP+VVTY  L++G C R+ +          
Sbjct: 286 IFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMD--------- 336

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+KVFD M  +G  P+V S+S +++ Y +  +   ++     M ++ + P + TY+++
Sbjct: 337 -EADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTL 395

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  GR+ DA  L  EMV +G  P   TY          +  + AM + + ++   L
Sbjct: 396 IHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNL 455

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ SYNI+I     +  ++   ++++ +   GL PD+ +YT++I+GLC +    EA 
Sbjct: 456 -APDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEAT 514

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           + F EM   G  P   T+  + RG ++++
Sbjct: 515 KLFREMNTDGCSPDDCTYNLITRGFLRNN 543



 Score =  140 bits (352), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G CK+     A R L  M+++  EPNV+TYN +++ + +          ++ + 
Sbjct: 182 YGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFK----------DRQVN 231

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM  +GI P+V++++ ++H   +  + +     +N M +  I P V  ++++V
Sbjct: 232 EALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLV 291

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +  A +++  M++ GV P   TY      +  R + + A K++  M   G C
Sbjct: 292 DALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKG-C 350

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ SY+ LI  +  + R+D    ++ ++    L P++ +Y  LIHGLC   + ++A  
Sbjct: 351 APNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIA 410

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
            F EM+  G +P  VT+  L   L ++  L     + K +  E      + Q+Y+ 
Sbjct: 411 LFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAI--EGSNLAPDIQSYNI 464



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 132/283 (46%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I+G CK +        + EM++  + PNVV +  L++ +C+          E  + 
Sbjct: 252 YNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCK----------EGMVT 301

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V D M  RG+EPDV +++ ++  +    +   +    + M  KG  P V +YS+++
Sbjct: 302 IAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLI 361

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI+ A  L  EM +  + P+  TYN              A+ L+ +M   G  
Sbjct: 362 NGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQ- 420

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y IL+        +D    +   ++GS L PD+ SY ++I G+C   + + A  
Sbjct: 421 IPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGD 480

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KGL P   T+  +  GL    +L    +L ++++ +
Sbjct: 481 LFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTD 523



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 121/259 (46%), Gaps = 11/259 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N ID A      M+     P+VV +  +L  +          +   T+ +  K  D +  
Sbjct: 53  NTIDEALSSFNRMLHMQPPPSVVDFAKILTSIANM-------KHYSTVLSLSKQMDSL-- 103

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
            GI  DV + +IV++ +   ++       L  + + G  P  AT++++++ LC  G+I +
Sbjct: 104 -GIPSDVYTLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGE 162

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A  L  +MV  G  P+  TY           ++  A++L R M +   C PN+ +YN +I
Sbjct: 163 ALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKN-CEPNVITYNTII 221

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                  +++    I++++   G+ P++ +Y  +IHGLC+  +WK       EM++  ++
Sbjct: 222 DCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIM 281

Query: 253 PQKVTFETLYRGLIQSDML 271
           P  V F TL   L +  M+
Sbjct: 282 PNVVIFTTLVDALCKEGMV 300



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 45/209 (21%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI G+CKI RID A     EM +R + PN+VTYN L++G+C    L          R
Sbjct: 357 YSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRL----------R 406

Query: 62  NAEKVFDEMRVRG-----------------------------------IEPDVTSFSIVL 86
           +A  +F EM   G                                   + PD+ S++IV+
Sbjct: 407 DAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVI 466

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
               R  + + + D  + +  KG+ P V TY+ ++  LC  G + +A +L  EM  +G  
Sbjct: 467 DGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCS 526

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           P   TYN   + +    +   A++L ++M
Sbjct: 527 PDDCTYNLITRGFLRNNETLSAIQLLQEM 555



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 3/157 (1%)

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP-NMHSY 188
           I++A      M+     PS   +          K  +  + L +QM  D L +P ++++ 
Sbjct: 55  IDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQM--DSLGIPSDVYTL 112

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
            I+I  F  LNR+D    +   +   G  PD  ++T LI GLC + K  EA   F +M+ 
Sbjct: 113 AIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVG 172

Query: 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           +G  P  VT+ TL  GL +    R   RL + + +++
Sbjct: 173 EGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKN 209



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 68/141 (48%), Gaps = 10/141 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G C++  ++ A      +  +G+ P+V TY +++NG+C           +  + 
Sbjct: 462 YNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLC----------LQGLLA 511

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F EM   G  PD  +++++   + R ++   ++  L  M  +G     +T + +V
Sbjct: 512 EATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIV 571

Query: 122 KCLCSCGRIEDAEELLGEMVR 142
           + L   G  +  +++L E V+
Sbjct: 572 EMLSDDGLDQSVKQILHEFVQ 592


>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
 gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
          Length = 502

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 143/268 (53%), Gaps = 15/268 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +  GWC I R   A   L EM+ERG+ P + TYN+LL G  R   L          +
Sbjct: 220 YNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYNILLKGYFRAGQL----------K 269

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A + F +M+ R +E DV +++ ++H +    + + +    N M  +GI P+ ATY++++
Sbjct: 270 EAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMI 329

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC    +E+A  +  EMV+ G  P+  TYN   +      + + AM+   +MK DG C
Sbjct: 330 QVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDG-C 388

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE--- 238
            PN+ +YN+ I  F     ++    ++  + G G  P+LD+Y +LI  +  ++K ++   
Sbjct: 389 EPNVQTYNVAIRYFCDAGDVEKGLSMFEKM-GQGSLPNLDTYNVLISAMFVRKKSEDLVV 447

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           A +  +EM+++G +P+K TF  +  GL+
Sbjct: 448 AGKLLLEMVDRGFIPRKFTFNRVLNGLL 475



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 1/206 (0%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A KVF  MR  G   D+ SF+ +L +  ++ + +++ + L  +        V +Y+ +  
Sbjct: 166 AIKVFLSMREHGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIAN 225

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C   R   A E+L EMV  G+ P+  TYN   K Y        A + + QMKE  + +
Sbjct: 226 GWCLIKRTPKALEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEI 285

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
            ++ +Y  ++  F  +  +   R+++N++ G G+ P   +Y  +I  LC+K   + A   
Sbjct: 286 -DVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLM 344

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQS 268
           F EM++KG +P   T+  + RGL  +
Sbjct: 345 FEEMVKKGYVPNLTTYNVVIRGLFHA 370



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 107/228 (46%), Gaps = 10/228 (4%)

Query: 51  HPSERFEKTIRNAEKVFD---------EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK 101
           H +  F+  I  A ++ D          MR R I P   +F+I+   +  A +P  ++  
Sbjct: 110 HSASSFDHAIDIAGRMRDYKTVWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKV 169

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
              M+E G    + ++++++  LC   R+E A   L +++R        +YN     +  
Sbjct: 170 FLSMREHGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCL 229

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
            K    A+++ ++M E GL  P + +YNIL+  +    ++    E +  +K   +  D+ 
Sbjct: 230 IKRTPKALEVLKEMVERGLT-PTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVV 288

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           +YT ++HG     + K A + F EM+ +G+LP   T+  + + L + D
Sbjct: 289 TYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKD 336


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 141/280 (50%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G CK  +IDMA +   +       P+VV Y+ L+ G+C+   L           
Sbjct: 150 YDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLD---------- 199

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F++MR    EPDV +F+ ++    +  + Q +   L  M+++   P V TYSS++
Sbjct: 200 EACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLI 259

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++ DA+E+   M+  G+ P+  TYN     +      + A+ L  +M   G C
Sbjct: 260 DGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATG-C 318

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +YN LI       R      ++ D+K     PD+ +Y+ LI G C+ ++   A  
Sbjct: 319 LPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMART 378

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            F +M+++ +LP  VTF TL  G   + ++    RL +++
Sbjct: 379 LFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEM 418



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 143/280 (51%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T +I G CK NR+  A  +  +M ++G  PN  TYNVL+NG C+   +H          
Sbjct: 10  WTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVH---------- 59

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  EM+  G+ P+V ++S V+H + R  +   +      M E G  P + TY++++
Sbjct: 60  RAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLL 119

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +++A ELL EM   G+ P   +Y+            + A+K++     +G C
Sbjct: 120 SGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFED-NSNGDC 178

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ LI       R+D   +++  ++ +   PD+ ++T L+ GLC+  + +EA Q
Sbjct: 179 PPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQ 238

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
               M ++   P  +T+ +L  GL ++  +R  + + K++
Sbjct: 239 VLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRM 278



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 131/276 (47%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I+G+C+  ++D A +   +M+E G  PN+VTYN LL+G+CR   +           
Sbjct: 80  YSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMD---------- 129

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ DEMR RG++PD  S+  ++    +  +  ++L            P V  YS+++
Sbjct: 130 EAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLI 189

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+++A +L  +M  N   P   T+               A ++   M ED  C
Sbjct: 190 AGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETM-EDRNC 248

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y+ LI       ++   +E++  +   G+ P++ +Y  LIHG C       A  
Sbjct: 249 TPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALL 308

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
              EM   G LP  +T+ TL  GL ++       RL
Sbjct: 309 LMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRL 344



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 132/265 (49%), Gaps = 11/265 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G+CK+ RIDMA     +M+++ V P+VVT++ L+ G C              + 
Sbjct: 360 YSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAG----------LVD 409

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE++ +EM      PDV +++ ++  + +  +   +   L  M ++G  P V TY++++
Sbjct: 410 DAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALI 469

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+   A +LL EMV NGV P+  TY      + G  D   A K+  +++ D  C
Sbjct: 470 DAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENC 529

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +M +Y +++       RM    E+   +K SG  P  D Y  LI GLC+ ++  +A +
Sbjct: 530 KADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAME 589

Query: 242 YFVEM-IEKGLLPQKVTFETLYRGL 265
              EM + +   P    +E + + L
Sbjct: 590 VLEEMTLSRKSRPNAEAYEAVIQEL 614



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 145/317 (45%), Gaps = 44/317 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+L+ G CK +R+  A++ L  M +R   PNV+TY+ L++G+C+             +R
Sbjct: 220 FTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQ----------VR 269

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A++VF  M VRGIEP+V +++ ++H +   +    +L  +  M   G  P + TY++++
Sbjct: 270 DAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLI 329

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
             LC  GR  +A  L G+M      P   TY+C    +   +  + A  L+  M +  + 
Sbjct: 330 DGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVL 389

Query: 181 ---------------------------------CVPNMHSYNILIGMFMALNRMDMVREI 207
                                            C P++++Y  L+  F  + RM   R +
Sbjct: 390 PDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRV 449

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +   G  P++ +YT LI   C   K   A +   EM+  G+ P  +T+ +L  G   
Sbjct: 450 LKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCG 509

Query: 268 SDMLRTWRRLKKKLDEE 284
           +  L   R++ ++L+ +
Sbjct: 510 TGDLEEARKMLERLERD 526



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 134/257 (52%), Gaps = 11/257 (4%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           E NV+T+ ++++G+C+   L  +  +          F +M+ +G  P+  +++++++ + 
Sbjct: 4   EKNVITWTIMIDGLCKANRLPEATTY----------FAKMKKKGTVPNEWTYNVLINGFC 53

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
           + H+   +   L  MKE G+ P V TYS+V+   C   +++ A +L  +MV NG  P+  
Sbjct: 54  KVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLV 113

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           TYN            + A +L  +M+E GL  P+  SY+ L+       ++DM  +++ D
Sbjct: 114 TYNTLLSGLCRNGLMDEAYELLDEMRERGL-QPDKFSYDTLMAGLCKTGKIDMALKVFED 172

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
                  PD+ +Y+ LI GLC+  +  EAC+ F +M E    P  VTF  L  GL + D 
Sbjct: 173 NSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDR 232

Query: 271 LRTWRRLKKKLDEESIT 287
           L+  +++ + +++ + T
Sbjct: 233 LQEAQQVLETMEDRNCT 249



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 135/306 (44%), Gaps = 47/306 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+G+C  N +D A   + EM   G  P+++TYN L++G+C+      + R      
Sbjct: 290 YNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRL----- 344

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                F +M+ +   PDV ++S ++  + +  +  ++    + M ++ + P V T+S++V
Sbjct: 345 -----FGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLV 399

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C+ G ++DAE LL EMV +   P   TY      +        A ++ ++M + G C
Sbjct: 400 EGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRG-C 458

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP----------------------- 218
            PN+ +Y  LI  F    +  +  ++  ++ G+G+ P                       
Sbjct: 459 QPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARK 518

Query: 219 -------------DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
                        D+ +Y +++ GLC   +   A +    + + G  P+   +  L RGL
Sbjct: 519 MLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGL 578

Query: 266 IQSDML 271
            Q   L
Sbjct: 579 CQGKEL 584



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 49/103 (47%)

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C  N+ ++ I+I      NR+      +  +K  G  P+  +Y +LI+G C+  K   A 
Sbjct: 3   CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 62

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
               EM E GL P  VT+ T+  G  +   + T  +L +++ E
Sbjct: 63  LLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVE 105


>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 147/282 (52%), Gaps = 13/282 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTSL++GWC+   I  AER  GEM   G++PNV TY+++++ +CR             I
Sbjct: 217 VYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQ----------I 266

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  VF EM   G +P+  +F+ ++ V+ +A + +  L   N MK  G  P   TY+ +
Sbjct: 267 TRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFL 326

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C    +E+A ++L   V+ G   +A ++N  F       D N A +++ +MK D  
Sbjct: 327 IESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMK-DLK 384

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN  +YNIL+ MF      DMV ++  ++  + + P+ ++Y +LI   C    W  A 
Sbjct: 385 CRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAY 444

Query: 241 QYFVEMI-EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            +F EMI EK L P    +E + + L ++  L+    L +K+
Sbjct: 445 SFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKM 486



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 120/265 (45%), Gaps = 13/265 (4%)

Query: 22  LGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81
              M + G +P+ + ++V+++ + ++          +    A+  FD ++ R  EPDV  
Sbjct: 169 FNRMEDYGCKPDKIAFSVVISSLSKK----------RRAIEAQSFFDSLKDR-FEPDVVV 217

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           ++ ++H + RA     +      MK  GI P V TYS V+  LC  G+I  A ++  EM+
Sbjct: 218 YTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMI 277

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
             G  P+A T+N   + +         +++Y QMK  G C P+  +YN LI      + +
Sbjct: 278 DVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLG-CPPDAITYNFLIESHCRDDNL 336

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   +I N VK  G   +  S+  +   + +      A + F +M +    P  VT+  L
Sbjct: 337 EEAVKILNSVK-KGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNIL 395

Query: 262 YRGLIQSDMLRTWRRLKKKLDEESI 286
            R            +L+K++DE  I
Sbjct: 396 MRMFADKKSTDMVLKLRKEMDENEI 420



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 9/224 (4%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYS---RAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           A   F+ M   G +PD  +FS+V+   S   RA + Q   D L    E    P V  Y+S
Sbjct: 165 AVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFE----PDVVVYTS 220

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +V   C  G I +AE + GEM   G+ P+  TY+              A  ++ +M + G
Sbjct: 221 LVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVG 280

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C PN  ++N L+ + +   R + V +++N +K  G  PD  +Y  LI   C     +EA
Sbjct: 281 -CDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEA 339

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            +  +  ++KG      +F  ++  + +   + +  R+  K+ +
Sbjct: 340 VK-ILNSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKD 382



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/167 (19%), Positives = 71/167 (42%), Gaps = 6/167 (3%)

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y  ++      G   +A      M   G  P    ++        ++ A  A   +  +K
Sbjct: 149 YMEMIDLAGKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLK 208

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           +     P++  Y  L+  +     +     ++ ++K +G+ P++ +Y+++I  LC   + 
Sbjct: 209 DR--FEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQI 266

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKK 279
             A   F EMI+ G  P  +TF  L R  +++     +L+ + ++K+
Sbjct: 267 TRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKR 313



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 12/141 (8%)

Query: 6   IYG-WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           I+G   K+  ++ A R   +M +    PN VTYN+L+     +          K+     
Sbjct: 360 IFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADK----------KSTDMVL 409

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVY-SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
           K+  EM    IEP+  ++ +++  +    H           ++EK + P++  Y  V++ 
Sbjct: 410 KLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQ 469

Query: 124 LCSCGRIEDAEELLGEMVRNG 144
           L   G+++  EEL+ +MV  G
Sbjct: 470 LRKAGQLKKHEELVEKMVNRG 490


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 141/280 (50%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G CK  +IDMA +   +       P+VV Y+ L+ G+C+   L           
Sbjct: 269 YDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLD---------- 318

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F++MR    EPDV +F+ ++    +  + Q +   L  M+++   P V TYSS++
Sbjct: 319 EACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLI 378

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++ DA+E+   M+  G+ P+  TYN     +      + A+ L  +M   G C
Sbjct: 379 DGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATG-C 437

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +YN LI       R      ++ D+K     PD+ +Y+ LI G C+ ++   A  
Sbjct: 438 LPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMART 497

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            F +M+++ +LP  VTF TL  G   + ++    RL +++
Sbjct: 498 LFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEM 537



 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 149/308 (48%), Gaps = 23/308 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR-RASLHPSERF---- 56
           Y  +I G CK   +D A   L EM E G  P+   YN +++ +C+ R +    + F    
Sbjct: 62  YAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSME 121

Query: 57  -EKTI----------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
            EK +                  A   F +M+ +G  P+  +++++++ + + H+   + 
Sbjct: 122 CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 181

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
             L  MKE G+ P V TYS+V+   C   +++ A +L  +MV NG  P+  TYN      
Sbjct: 182 LLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 241

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
                 + A +L  +M+E GL  P+  SY+ L+       ++DM  +++ D       PD
Sbjct: 242 CRNGLMDEAYELLDEMRERGL-QPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPD 300

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
           + +Y+ LI GLC+  +  EAC+ F +M E    P  VTF  L  GL + D L+  +++ +
Sbjct: 301 VVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLE 360

Query: 280 KLDEESIT 287
            +++ + T
Sbjct: 361 TMEDRNCT 368



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 131/265 (49%), Gaps = 11/265 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G+CK+ RIDMA     +M+++ V P+VVT++ L+ G C              + 
Sbjct: 479 YSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAG----------LVD 528

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE++ +EM      PDV +++ ++  + +  +   +   L  M ++G  P V TY++++
Sbjct: 529 DAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALI 588

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+   A  LL EMV NGV P+  TY      + G  D   A K+  +++ D  C
Sbjct: 589 DAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENC 648

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +M +Y +++       RM    E+   +K SG  P  D Y  LI GLC+ ++  +A +
Sbjct: 649 KADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAME 708

Query: 242 YFVEM-IEKGLLPQKVTFETLYRGL 265
              EM + +   P    +E + + L
Sbjct: 709 VLEEMTLSRKSRPNAEAYEAVIQEL 733



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 145/317 (45%), Gaps = 44/317 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+L+ G CK +R+  A++ L  M +R   PNV+TY+ L++G+C+             +R
Sbjct: 339 FTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQ----------VR 388

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A++VF  M VRGIEP+V +++ ++H +   +    +L  +  M   G  P + TY++++
Sbjct: 389 DAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLI 448

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
             LC  GR  +A  L G+M      P   TY+C    +   +  + A  L+  M +  + 
Sbjct: 449 DGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVL 508

Query: 181 ---------------------------------CVPNMHSYNILIGMFMALNRMDMVREI 207
                                            C P++++Y  L+  F  + RM   R +
Sbjct: 509 PDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRV 568

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +   G  P++ +YT LI   C   K   A +   EM+  G+ P  +T+ +L  G   
Sbjct: 569 LKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCG 628

Query: 268 SDMLRTWRRLKKKLDEE 284
           +  L   R++ ++L+ +
Sbjct: 629 TGDLEEARKILERLERD 645



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 136/316 (43%), Gaps = 43/316 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L     +  RID     L      G+ PNV TY V++ G+C+   L           
Sbjct: 27  YNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLD---------- 76

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLD--------------------- 100
            A ++ +EMR  G  PD   ++ V+H   +A     +LD                     
Sbjct: 77  KACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDGL 136

Query: 101 -KLNF----------MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
            K N           MK+KG  P   TY+ ++   C   ++  A  LL EM  +G+ P+ 
Sbjct: 137 CKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNV 196

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
            TY+     +  +   + A KL+RQM E+G C+PN+ +YN L+        MD   E+ +
Sbjct: 197 VTYSTVIHGFCRQTKVDTAYKLFRQMVENG-CMPNLVTYNTLLSGLCRNGLMDEAYELLD 255

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           +++  GL PD  SY  L+ GLC+  K   A + F +       P  V + TL  GL ++ 
Sbjct: 256 EMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAG 315

Query: 270 MLRTWRRLKKKLDEES 285
            L    +L +K+ E S
Sbjct: 316 RLDEACKLFEKMRENS 331



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 128/296 (43%), Gaps = 27/296 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y SLI+G+C  N +D A   + EM   G  P+++TYN L++G+C+      + R      
Sbjct: 409 YNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMK 468

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                + I  A  +FD+M  + + PDV +FS ++  Y  A    
Sbjct: 469 AKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVD 528

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L  M      P V TY+S+V   C  GR+ +A  +L  M + G  P+  TY    
Sbjct: 529 DAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALI 588

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV-KGSG 215
             +        A +L  +M  +G+  PN+ +Y  LIG F     ++  R+I   + +   
Sbjct: 589 DAFCRAGKPTVAYRLLEEMVGNGV-QPNVITYRSLIGGFCGTGDLEEARKILERLERDEN 647

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              D+ +Y +++ GLC   +   A +    + + G  P+   +  L RGL Q   L
Sbjct: 648 CKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKEL 703



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 113/245 (46%), Gaps = 31/245 (12%)

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           +G + +V +++ +     RA +   +   L      GI P V TY+ V++ LC  G ++ 
Sbjct: 18  QGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDK 77

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK-----------EDGLC 181
           A ELL EM  +G  P A  YN         ++   A+  +R M+            DGLC
Sbjct: 78  ACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDGLC 137

Query: 182 --------------------VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
                               VPN  +YN+LI  F  ++++     +  ++K SGL P++ 
Sbjct: 138 KANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVV 197

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +Y+ +IHG C + K   A + F +M+E G +P  VT+ TL  GL ++ ++     L  ++
Sbjct: 198 TYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEM 257

Query: 282 DEESI 286
            E  +
Sbjct: 258 RERGL 262



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
           K++G    V TY+ + + L    RI++   +L      G+ P+  TY    +      D 
Sbjct: 16  KQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDL 75

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
           + A +L  +M+E G  VP+   YN +I    AL +     +  +  +      ++ ++T+
Sbjct: 76  DKACELLEEMRESGP-VPDAAIYNFVI---HALCKARNTAKALDYFRSMECEKNVITWTI 131

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           +I GLC+  +  EA  YF +M +KG +P + T+  L  G  +   +     L K++ E  
Sbjct: 132 MIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESG 191

Query: 286 IT 287
           + 
Sbjct: 192 LA 193



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 164 DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSY 223
           D + A++ +    +      N+++YN L    +   R+D    I  +    G+ P++ +Y
Sbjct: 3   DPDAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTY 62

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
            ++I GLC+     +AC+   EM E G +P    +  +   L ++      R   K LD
Sbjct: 63  AVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKA------RNTAKALD 115


>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 147/282 (52%), Gaps = 13/282 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTSL++GWC+   I  AER  GEM   G++PNV TY+++++ +CR             I
Sbjct: 252 VYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQ----------I 301

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  VF EM   G +P+  +F+ ++ V+ +A + +  L   N MK  G  P   TY+ +
Sbjct: 302 TRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFL 361

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C    +E+A ++L   V+ G   +A ++N  F       D N A +++ +MK D  
Sbjct: 362 IESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMK-DLK 419

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN  +YNIL+ MF      DMV ++  ++  + + P+ ++Y +LI   C    W  A 
Sbjct: 420 CRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAY 479

Query: 241 QYFVEMI-EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            +F EMI EK L P    +E + + L ++  L+    L +K+
Sbjct: 480 SFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKM 521



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 127/285 (44%), Gaps = 13/285 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T L+  + K      A      M + G +P+ + ++V+++ + ++          +   
Sbjct: 184 FTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKK----------RRAI 233

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+  FD ++ R  EPDV  ++ ++H + RA     +      MK  GI P V TYS V+
Sbjct: 234 EAQSFFDSLKDR-FEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVI 292

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+I  A ++  EM+  G  P+A T+N   + +         +++Y QMK  G C
Sbjct: 293 DALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLG-C 351

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN LI      + ++   +I N VK  G   +  S+  +   + +      A +
Sbjct: 352 PPDAITYNFLIESHCRDDNLEEAVKILNSVK-KGCNLNASSFNPIFGCISKLGDVNSAHR 410

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F +M +    P  VT+  L R            +L+K++DE  I
Sbjct: 411 MFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEI 455



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 119/266 (44%), Gaps = 23/266 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I    K+ + D+A + +  M  R VE  V T+ +L+             R+ K   
Sbjct: 149 YMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILV------------RRYVKAGL 196

Query: 62  NAEKV--FDEMRVRGIEPDVTSFSIVLHVYS---RAHQPQLSLDKLNFMKEKGICPTVAT 116
            AE V  F+ M   G +PD  +FS+V+   S   RA + Q   D L    E    P V  
Sbjct: 197 AAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFE----PDVVV 252

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+S+V   C  G I +AE + GEM   G+ P+  TY+              A  ++ +M 
Sbjct: 253 YTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMI 312

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           + G C PN  ++N L+ + +   R + V +++N +K  G  PD  +Y  LI   C     
Sbjct: 313 DVG-CDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNL 371

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLY 262
           +EA +  +  ++KG      +F  ++
Sbjct: 372 EEAVK-ILNSVKKGCNLNASSFNPIF 396



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 93/221 (42%), Gaps = 41/221 (18%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A ++ D M+ R +E  V +F+I++  Y +A     ++   N M++ G  P    +S V+ 
Sbjct: 165 AWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVIS 224

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            L    R  +A+                    FF   + R +                  
Sbjct: 225 SLSKKRRAIEAQS-------------------FFDSLKDRFE------------------ 247

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++  Y  L+  +     +     ++ ++K +G+ P++ +Y+++I  LC   +   A   
Sbjct: 248 PDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDV 307

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKK 279
           F EMI+ G  P  +TF  L R  +++     +L+ + ++K+
Sbjct: 308 FSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKR 348



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 12/141 (8%)

Query: 6   IYG-WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           I+G   K+  ++ A R   +M +    PN VTYN+L+     + S     +  K      
Sbjct: 395 IFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRK------ 448

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVY-SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
               EM    IEP+  ++ +++  +    H           ++EK + P++  Y  V++ 
Sbjct: 449 ----EMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQ 504

Query: 124 LCSCGRIEDAEELLGEMVRNG 144
           L   G+++  EEL+ +MV  G
Sbjct: 505 LRKAGQLKKHEELVEKMVNRG 525


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 140/288 (48%), Gaps = 11/288 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G C   R+  A   L +M+ R  +P+VVTY VLL  VC+ +             
Sbjct: 140 YTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFG---------- 189

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KV DEMR +G  P++ +++++++   R  +   +   LN +   G  P   +Y++V+
Sbjct: 190 QAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVL 249

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC+  R ED E L  EMV N   P+  T++   + +        A+++  +M E G C
Sbjct: 250 KGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHG-C 308

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N    NI+I       R+D   E  N++   G  PD  SYT ++ GLC   +W++A +
Sbjct: 309 TANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKE 368

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
              EM+ K   P +VTF T    L Q  ++     L +++ E   + G
Sbjct: 369 LLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVG 416



 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 132/286 (46%), Gaps = 18/286 (6%)

Query: 12  INRIDMAE--RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           I R D+AE  R +     RG  P+V     L+  +CRR     + R    +R AE     
Sbjct: 46  IARDDLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAAR---VLRTAEG---- 98

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN-FMKEKGICPTVATYSSVVKCLCSCG 128
               G   DV +++ ++  Y R  +    LD     +    + P   TY+ +++ LC  G
Sbjct: 99  ---SGAPVDVFAYNTLVAGYCRYGR----LDAARRLIASMPVPPDAYTYTPLIRGLCDRG 151

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           R+ DA  LL +M+R    PS  TY    +          AMK+  +M+  G C PN+ +Y
Sbjct: 152 RVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKG-CTPNIVTY 210

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N++I      +R+D  R+I N +   G  PD  SYT ++ GLC  ++W++    F EM+E
Sbjct: 211 NVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVE 270

Query: 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
              +P +VTF+ L R   +  M+     +  ++ E   T  +   N
Sbjct: 271 NNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCN 316



 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 131/286 (45%), Gaps = 14/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+++ G C   R +  E    EM+E    PN VT+++L+   CR             + 
Sbjct: 245 YTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGG----------MVE 294

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V D M   G   + T  +IV++   +  +   + + LN M   G  P   +Y++V+
Sbjct: 295 RAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVL 354

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC  GR EDA+ELL EMVR    P+  T+N F      +   + A+ L  QM E G C
Sbjct: 355 KGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYG-C 413

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              + +YN L+  F    R+D   E++N +      P+  +YT L+ GLC  ++   A +
Sbjct: 414 SVGIVTYNALVNGFCVQGRVDSALELFNSLPCE---PNTITYTTLLTGLCHAERLDAAAE 470

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              EM++       VTF  L     Q   +     L +++ E   T
Sbjct: 471 LLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCT 516



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 138/296 (46%), Gaps = 16/296 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + + I   C+   ID A   + +M E G    +VTYN L+NG C           +  + 
Sbjct: 385 FNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFC----------VQGRVD 434

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP-TVATYSSV 120
           +A ++F+ +     EP+  +++ +L     A +   + + L  M +   CP  V T++ +
Sbjct: 435 SALELFNSLPC---EPNTITYTTLLTGLCHAERLDAAAELLAEMMQND-CPLNVVTFNVL 490

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V   C  G +E+A EL+ +M+ +G  P+  T+N          ++  A++L   +   G+
Sbjct: 491 VSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGI 550

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +  + +Y+ ++ +    +R++   ++++ V+  G+ P    Y  ++  LC++ +   A 
Sbjct: 551 SLDTI-TYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAI 609

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYH 296
            +F  M+    +P + T+  L  GL +  +L+  R +  +L    +   S  ++ H
Sbjct: 610 DFFAHMVSNSCMPNESTYVILIEGLAREGLLKEARYVLSELCSRGVLSKSLIEDRH 665


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 143/280 (51%), Gaps = 17/280 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G C   +I  A     +MI  G +PNVVTY  L+NG+C+          ++ + 
Sbjct: 118 FTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK----------DRQVT 167

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM  +GI P++ +++ ++H   +  + +     +N M +  I P V T ++VV
Sbjct: 168 EAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVV 227

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G + +A +++  M+  GV P+  TYN     +  R + + A+K++  M     C
Sbjct: 228 DALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKD-C 286

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V N+ SYN LI  +  +  +D    ++ ++    L P+  +Y  LIHGLC   + ++A  
Sbjct: 287 VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAIS 346

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            F EM+ +G +P  VT+ TL      SD L   R L K +
Sbjct: 347 LFHEMVARGQIPDLVTYRTL------SDYLCKNRHLDKAM 380



 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 134/282 (47%), Gaps = 24/282 (8%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C + R+  A   L ++++ G +P+VVTY  L+NG+C+                  
Sbjct: 622 LINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCK------------------ 663

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
                M  +GI PD+ +++ ++H      + +     LN M    I P V  +S+VV  L
Sbjct: 664 -----MITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDAL 718

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G I  A +++  M++ GV P   TY      +  R + + A+K++  M   G CVPN
Sbjct: 719 CKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG-CVPN 777

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + SYNILI  +  + RMD    +   +   GL  D  +Y  LIHGLC   + + A   F 
Sbjct: 778 VRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFH 837

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           EM+  G +P  VT+  L   L ++  L     L K ++  ++
Sbjct: 838 EMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNL 879



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 137/279 (49%), Gaps = 12/279 (4%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +++   CK   +  A   +  MI RGVEPNVVTYN L++G C R            +  A
Sbjct: 225 TVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLR----------NEVDVA 274

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            KVFD M  +    +V S++ +++ Y +      ++     M  + + P   TY++++  
Sbjct: 275 VKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHG 334

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC  GR++DA  L  EMV  G  P   TY          +  + AM L + + E     P
Sbjct: 335 LCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAI-EGSNWDP 393

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++  Y  ++        ++  R++++++   GL P++ +Y ++IHGLC++    EA + F
Sbjct: 394 DIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLF 453

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSD-MLRTWRRLKKKL 281
            EM + G  P   T+  + RG ++++  LRT   L++ L
Sbjct: 454 SEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEML 492



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 11/251 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++++++   CK   I +A   +  MI+RGVEP+VVTY  L++G C R+ +          
Sbjct: 710 VFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEM---------- 759

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A KVFD M  +G  P+V S++I+++ Y +  +   ++  L  M  +G+     TY+++
Sbjct: 760 DEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTL 819

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  GR++ A  L  EMV +G  P   TY               AM L + ++   L
Sbjct: 820 IHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNL 879

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              ++  YNI I        ++  R++++++   GL PD+ +Y ++IHGLC++    EA 
Sbjct: 880 DA-DILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEAN 938

Query: 241 QYFVEMIEKGL 251
           + F +M E  +
Sbjct: 939 KLFRKMDENDI 949



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 128/285 (44%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+  C +         L EM+   + PNVV ++ +++ +C+          E  I 
Sbjct: 676 YNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCK----------EGMIA 725

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V D M  RG+EPDV +++ ++  +    +   ++   + M  KG  P V +Y+ ++
Sbjct: 726 IAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILI 785

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R++ A  LL +M   G+     TYN              A+ L+ +M   G  
Sbjct: 786 NGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQ- 844

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y IL+      + +     +   ++GS L  D+  Y + I G+C   + + A  
Sbjct: 845 IPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARD 904

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F  +  KGL P   T+  +  GL +  +L    +L +K+DE  I
Sbjct: 905 LFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDI 949



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 137/308 (44%), Gaps = 26/308 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           Y +LI G CK  ++  A     EMI +G+ PN+VTYN L++G+C+               
Sbjct: 153 YGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMV 212

Query: 47  RASLHPSERFEKTIRNA----------EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            + + P      T+ +A            V D M  RG+EP+V +++ ++  +   ++  
Sbjct: 213 DSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVD 272

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           +++   + M  K     V +Y++++   C    ++ A  L  EM R  + P+  TYN   
Sbjct: 273 VAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLI 332

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      A+ L+ +M   G  +P++ +Y  L         +D    +   ++GS  
Sbjct: 333 HGLCHVGRLQDAISLFHEMVARGQ-IPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNW 391

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD+  YT ++ G+C   + ++A   F  +  KGL P   T+  +  GL +  +L    +
Sbjct: 392 DPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASK 451

Query: 277 LKKKLDEE 284
           L  ++++ 
Sbjct: 452 LFSEMNKN 459



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 111/252 (44%), Gaps = 11/252 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N +D A      M+ +   P+ V +N LL  + +        +   T+ +  +  D    
Sbjct: 24  NTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAK-------TKHHSTLLSLSRQMDSF-- 74

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
            GI PDV + +IV++     ++   +   L  + + G  P   T++++++ LC  G+I +
Sbjct: 75  -GIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGE 133

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A  L  +M+  G  P+  TY          +    A  ++ +M   G+  PN+ +YN LI
Sbjct: 134 ALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGIS-PNIVTYNSLI 192

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                L     V  + N++  S + PD+ +   ++  LC++    EA      MI +G+ 
Sbjct: 193 HGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVE 252

Query: 253 PQKVTFETLYRG 264
           P  VT+  L  G
Sbjct: 253 PNVVTYNALMDG 264



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 11/194 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G C + R+  A     EM+ RG  P++VTY  L + +C+   L  +    K I 
Sbjct: 328 YNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIE 387

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            +            +PD+  ++ +L    RA + + + D  + +  KG+ P V TY+ ++
Sbjct: 388 GSNW----------DPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMI 437

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G + +A +L  EM +NG  P+  TYN   + +    +A   ++L  +M   G  
Sbjct: 438 HGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFS 497

Query: 182 VPNMHSYNILIGMF 195
           V ++ +  +L+GM 
Sbjct: 498 V-DVSTTTLLVGML 510



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/363 (20%), Positives = 140/363 (38%), Gaps = 84/363 (23%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+++ G C+   ++ A      +  +G++PNV TYN++++G+C++  L          
Sbjct: 397 IYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLL---------- 446

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS-- 118
             A K+F EM   G  P+  +++++   + R ++   +++ L  M  +G    V+T +  
Sbjct: 447 AEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLL 506

Query: 119 -----------SVVKCLC---SCGR------------------------------IEDAE 134
                      SV + LC   S  R                              ++DA 
Sbjct: 507 VGMLSDDGLDQSVKQILCKPSSSSRPSGTQMRSLPPLFLSSSHNSLHSRSPHFNTLDDAL 566

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
                M+     PS   +          K  +  + L  QM   G+  P++++ NILI  
Sbjct: 567 SSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGI-PPDVYTLNILINS 625

Query: 195 FMALNRMDMVREIWNDVK----------------------GSGLGPDLDSYTMLIHGLCE 232
           F  L R+     +   +                         G+ PD+ +Y  LIH LC 
Sbjct: 626 FCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKMITKGISPDIFTYNSLIHALCN 685

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESIT 287
             +WK       EM+   ++P  V F T+   L +  M+          +K+ ++ + +T
Sbjct: 686 LCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVT 745

Query: 288 FGS 290
           + +
Sbjct: 746 YTA 748



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 12/208 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C+I R+D A   L +M  +G+  + VTYN L++G+C    L          +
Sbjct: 781 YNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRL----------Q 830

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +F EM   G  PD+ ++ I+L    + H    ++  L  ++   +   +  Y+  +
Sbjct: 831 HAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAI 890

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G +E A +L   +   G+ P   TYN        R   + A KL+R+M E+ + 
Sbjct: 891 DGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDIW 950

Query: 182 VPNMHSYN--ILIGMFMALNRMDMVREI 207
             +  S N   LI   + L  +D+V  I
Sbjct: 951 SNSTSSRNQKSLIYQKIMLPEIDLVYSI 978



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 5/225 (2%)

Query: 49  SLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA--HQPQLSLDKLNFMK 106
           + H       T+  A   F+ M  +   P    F+ +L   ++   H   LSL +   M 
Sbjct: 15  TFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQ--MD 72

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
             GI P V T + V+  LC   R++ A   L ++++ G  P A T+    +         
Sbjct: 73  SFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIG 132

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            A+ L+ +M  +G   PN+ +Y  LI       ++     I++++   G+ P++ +Y  L
Sbjct: 133 EALHLFDKMIGEGF-QPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSL 191

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           IHGLC+  +WK       EM++  ++P   T  T+   L +  M+
Sbjct: 192 IHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMV 236


>gi|449431996|ref|XP_004133786.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
 gi|449477985|ref|XP_004155184.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
          Length = 485

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 143/260 (55%), Gaps = 14/260 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  ++ GWC I  +   ER   EM  RG+  + V+Y   ++   +  +LH      K +R
Sbjct: 187 FNIILNGWCVIGSLRDTERVWKEMTRRGISHDAVSYASCISCYSKVRNLH------KVLR 240

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F++M+   I+PD   ++ V+H  ++    + + D +  M+EKGI   V TY+SV+
Sbjct: 241 ----LFEDMKRMKIDPDRKVYNAVIHSLAKGRCLKEAADLIKTMEEKGIIANVVTYNSVI 296

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC   R ++A  +  E+++ G+CP+ +TY+ F +  R  ++     +L ++M+  G C
Sbjct: 297 KPLCKARRFDEARAVFEELLQRGLCPTIQTYHAFLRFLRTEEE---IFELLKKMRTMG-C 352

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P   +Y +LI  F    ++D V  IW+++  +G+ PD  SY +LIHGL    K ++A +
Sbjct: 353 NPTTDTYIMLIRKFCRWRQLDNVSRIWHEMSENGISPDRSSYIVLIHGLFLNGKLEDAHK 412

Query: 242 YFVEMIEKGLLPQKVTFETL 261
           Y++EM EK LLP+    E L
Sbjct: 413 YYLEMKEKDLLPEPKIDEVL 432



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 13/180 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I+   K   +  A   +  M E+G+  NVVTYN ++  +C+      + RF++  
Sbjct: 256 VYNAVIHSLAKGRCLKEAADLIKTMEEKGIIANVVTYNSVIKPLCK------ARRFDE-- 307

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  VF+E+  RG+ P + ++   L  + R  +    L  L  M+  G  PT  TY  +
Sbjct: 308 --ARAVFEELLQRGLCPTIQTYHAFLR-FLRTEEEIFEL--LKKMRTMGCNPTTDTYIML 362

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C   ++++   +  EM  NG+ P   +Y               A K Y +MKE  L
Sbjct: 363 IRKFCRWRQLDNVSRIWHEMSENGISPDRSSYIVLIHGLFLNGKLEDAHKYYLEMKEKDL 422



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 111/266 (41%), Gaps = 13/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEP--NVVTYNVLLNGVCRRASLHPSERFEKT 59
           Y S+I    K+ + D A   + EM  RG  P  ++VT   LL  + R  ++H        
Sbjct: 80  YHSMISILGKMRKFDTAWALIDEM--RGGTPGSSLVTPQTLLIMIRRYCAVH-------D 130

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +  A   F   +  G    +  F  +L    R    +   + L F  +        +++ 
Sbjct: 131 VAKAINTFYAHKRFGFNIGLEEFQSLLSALCRYKNVK-DAEYLLFCNKDVFPFNTKSFNI 189

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++   C  G + D E +  EM R G+   A +Y      Y   ++ +  ++L+  MK   
Sbjct: 190 ILNGWCVIGSLRDTERVWKEMTRRGISHDAVSYASCISCYSKVRNLHKVLRLFEDMKRMK 249

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  P+   YN +I        +    ++   ++  G+  ++ +Y  +I  LC+ +++ EA
Sbjct: 250 I-DPDRKVYNAVIHSLAKGRCLKEAADLIKTMEEKGIIANVVTYNSVIKPLCKARRFDEA 308

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGL 265
              F E++++GL P   T+    R L
Sbjct: 309 RAVFEELLQRGLCPTIQTYHAFLRFL 334


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 140/282 (49%), Gaps = 11/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI   C   RI  A     +M+ RG  P+VVTY++LL+  C+          E   R
Sbjct: 254 FNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCK----------ESGYR 303

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + DEMR +G EPD+ +++++++          +L+ L+ +   G  P   TY+ V+
Sbjct: 304 QAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVL 363

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC   R ++ EELL EM  N   P   T+N        +   + A+++   M E G C
Sbjct: 364 KSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHG-C 422

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V ++ +Y+ ++     + R+D   E+ + +K  G  PD  +YT ++ GLC  ++W+ A +
Sbjct: 423 VADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEE 482

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
              EM+     P +VTF T+   L Q  ++    R+ +++ E
Sbjct: 483 LMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSE 524



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 129/270 (47%), Gaps = 11/270 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT ++   C   R    E  L EM      P+ VT+N ++  +C++            + 
Sbjct: 359 YTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQG----------LVD 408

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V D M   G   D+ ++S +L       +   +++ L+ +K  G  P    Y++V+
Sbjct: 409 RAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVL 468

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LCS  + E AEEL+ EM+ +   P   T+N        +   + A+++  QM E+G C
Sbjct: 469 KGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENG-C 527

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN +I      + +D   E+ +D++  G  PD+ ++  L+ GLC   +W++A Q
Sbjct: 528 SPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQ 587

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
               M+     P ++TF T+   L Q  +L
Sbjct: 588 LMANMMRSNCPPDELTFNTVITSLCQKGLL 617



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 122/280 (43%), Gaps = 13/280 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G C  + ID A   L ++   G +P++VT+N LL G+C        +R+E    
Sbjct: 534 YNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCG------VDRWE---- 583

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE++   M      PD  +F+ V+    +      +++ L  M E G  P  +TYS VV
Sbjct: 584 DAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVV 643

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G+ + A ELL  M  NG  P   TYN              A+ L R M  +GLC
Sbjct: 644 DALLKAGKAQAALELLSGMT-NGT-PDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLC 701

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y  L       +  D    +   V+ +GL PD   Y  ++ G C  ++   A  
Sbjct: 702 -PDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAID 760

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            F  M+  G +P + T+  L   L    +L   +RL   L
Sbjct: 761 CFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASL 800



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 125/258 (48%), Gaps = 13/258 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L+ G C ++R + AE+ +  M+     P+ +T+N ++  +C++  L           
Sbjct: 569 FNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLL----------T 618

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +    M   G  P+ +++SIV+    +A + Q +L+ L+ M      P + TY++V+
Sbjct: 619 QAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGT--PDLITYNTVI 676

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G++E+A +LL  MV NG+CP   TY             + A+++ R++++ GL 
Sbjct: 677 SNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGL- 735

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+   YN ++  F    R D+  + +  +  SG  PD  +Y +L+  L       EA +
Sbjct: 736 SPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKR 795

Query: 242 YFVEMIEKGLLPQKVTFE 259
               +   G+L +K+  E
Sbjct: 796 LLASLCSLGVLDKKLIEE 813



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 79/195 (40%), Gaps = 33/195 (16%)

Query: 109 GICPTVATYSSVVKCLCSCGRIEDAEELLG------------------------------ 138
           G   TV TY+++V   C  GRIEDA  L+                               
Sbjct: 214 GPSATVVTYNTMVNGYCRAGRIEDARRLINGMPFPPDTFTFNPLIRALCVRGRIPDALAV 273

Query: 139 --EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
             +M+  G  PS  TY+              AM L  +M+  G C P++ +YN+LI    
Sbjct: 274 FDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKG-CEPDIVTYNVLINAMC 332

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
               +D    I +++   G  PD  +YT ++  LC  ++WKE  +   EM      P +V
Sbjct: 333 NEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEV 392

Query: 257 TFETLYRGLIQSDML 271
           TF T+   L Q  ++
Sbjct: 393 TFNTIVTSLCQQGLV 407



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 7/155 (4%)

Query: 111 CPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMK 170
           CP V   + ++K LCS GR+ DAE +   +   G   +  TYN     Y        A +
Sbjct: 184 CPPVVPCNILIKRLCSDGRVSDAERVFAAL---GPSATVVTYNTMVNGYCRAGRIEDARR 240

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           L   M       P+  ++N LI       R+     +++D+   G  P + +Y++L+   
Sbjct: 241 LINGMPFP----PDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDAT 296

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           C++  +++A     EM  KG  P  VT+  L   +
Sbjct: 297 CKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAM 331


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 138/273 (50%), Gaps = 12/273 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + ++I+G+ K   +  A   + EM+++GVEP+VVTYN +++ +C+           + + 
Sbjct: 267 FNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCK----------ARAMD 316

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE V  +M  +G+EPD  +++ ++H YS +   + S      M  KG+ P + T++S +
Sbjct: 317 KAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFM 376

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR +DAEE+   M   G  P   +Y+     Y           L+  M + G+ 
Sbjct: 377 SSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGI- 435

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V N H +NILI        MD    ++ +++G G+ PD+ +Y+ LI   C   +  +A +
Sbjct: 436 VANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAME 495

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL-IQSDMLRT 273
            F +MI  GL P  V + +L  G  +  D+++ 
Sbjct: 496 KFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKA 528



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 151/352 (42%), Gaps = 65/352 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNG-VCRRASLHPSERFEKTI 60
           Y S++   CK   +D AE  L +M+++GVEP+ +TY  +++G  C       ++ F K  
Sbjct: 302 YNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMT 361

Query: 61  ------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYS------ 90
                                   ++AE++F  M  +G  PD+ S+SI+LH Y+      
Sbjct: 362 SKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFA 421

Query: 91  -------------------------RAHQPQLSLDKLNF----MKEKGICPTVATYSSVV 121
                                     AH  +  +D+       M+ +G+ P V TYS+++
Sbjct: 422 DMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLI 481

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR+ DA E   +M+  G+ P+   Y+     +    D   A +L  +M   G+ 
Sbjct: 482 SAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIP 541

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+  ++ +I       R+    +++N V   G  P + ++  LI G C   K ++A  
Sbjct: 542 RPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFG 601

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRR-LKKKLDEESITF 288
               M+  G+ P  VT+ TL  G  +S    D L  +R  L KK+   ++T+
Sbjct: 602 VLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTY 653



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 125/269 (46%), Gaps = 15/269 (5%)

Query: 9   WCKINRIDMA-ERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVF 67
            C   R D A +  L  M + G  PN ++YN ++  +C         R ++ +   +++ 
Sbjct: 201 LCHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLC------GDSRSQEALDMVQRMA 254

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127
            E       PDV SF+ V+H + +  +   + + +N M +KG+ P V TY+S+V  LC  
Sbjct: 255 KEGG--RCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKA 312

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
             ++ AE +L +MV  GV P   TY      Y        + K++R+M   GL +P + +
Sbjct: 313 RAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGL-IPGIVT 371

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           +N  +       R     EI+  +   G  PDL SY++L+HG   + ++ +    F  M 
Sbjct: 372 FNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMA 431

Query: 248 EKGLLPQKVTFETLY-----RGLIQSDML 271
           +KG++     F  L      RG++   ML
Sbjct: 432 DKGIVANCHCFNILISAHAKRGMMDEAML 460



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 127/279 (45%), Gaps = 12/279 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++S+I+  C   R+  A      +I  G  P +VT+N L++G C         + EK   
Sbjct: 548 FSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVG------KMEK--- 598

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V D M   GIEPDV +++ ++  Y ++ +    L     M  K + PT  TYS V+
Sbjct: 599 -AFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVL 657

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR   A+++  EM+ +G     +TY    K        + A+ L+ ++     C
Sbjct: 658 DGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMD-C 716

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++   N +I     + R +   +++  +  SGL P++ +Y ++IH L ++   +EA  
Sbjct: 717 KFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADT 776

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ-SDMLRTWRRLKK 279
            F  M + G  P       + R L+Q  D+++    + K
Sbjct: 777 MFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKAGYYMSK 815



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 130/281 (46%), Gaps = 12/281 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI    K   +D A     EM  +GV P+VVTY+ L++  CR   L  ++  EK   
Sbjct: 442 FNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRL--ADAMEK--- 496

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSV 120
                F +M   G+EP+   +  ++H +        + + ++ M  KGI  P +  +SS+
Sbjct: 497 -----FSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSI 551

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC+ GR+ DA ++   ++  G  P+  T+N     Y        A  +   M   G+
Sbjct: 552 IHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGI 611

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +YN L+  +    ++D    ++ ++    + P   +Y++++ GL    +   A 
Sbjct: 612 -EPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAK 670

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           + F EMI+ G      T++ L +GL ++D+      L  KL
Sbjct: 671 KMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKL 711



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 101/213 (47%), Gaps = 2/213 (0%)

Query: 79  VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE-LL 137
           V ++ I++    RA +P L       +   G+       ++ +KCLC   R ++A + LL
Sbjct: 156 VHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDVLL 215

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM-KEDGLCVPNMHSYNILIGMFM 196
             M   G  P+A +YN   K   G   +  A+ + ++M KE G C P++ S+N +I  F 
Sbjct: 216 HRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFF 275

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
               +     + N++   G+ PD+ +Y  ++  LC+ +   +A     +M++KG+ P  +
Sbjct: 276 KQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGL 335

Query: 257 TFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
           T+  +  G   S   +   ++ +K+  + +  G
Sbjct: 336 TYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPG 368



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 109/255 (42%), Gaps = 23/255 (9%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA-------HQPQLSLDKLNFMKEKGICPTV 114
           +A  +FDE+  +G      + +  L   +RA       + P L L   N +  +   P V
Sbjct: 92  DAHHLFDELLRQGTPVHNPALNGFLAALARAPDSVSCSNGPALVLALFNRICREEAGPRV 151

Query: 115 A-----TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAM 169
           A     TY  ++ C C   R +        ++R G+       N F K     K  + A+
Sbjct: 152 APLSVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAV 211

Query: 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNR----MDMVREIWNDVKGSGLGPDLDSYTM 225
            +      D  CVPN  SYN +I      +R    +DMV+ +  +  G    PD+ S+  
Sbjct: 212 DVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKE--GGRCSPDVVSFNT 269

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM-----LRTWRRLKKK 280
           +IHG  ++ +  +AC    EM++KG+ P  VT+ ++   L ++       L   + + K 
Sbjct: 270 VIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKG 329

Query: 281 LDEESITFGSEFQNY 295
           ++ + +T+ +    Y
Sbjct: 330 VEPDGLTYTAIIHGY 344


>gi|356499705|ref|XP_003518677.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Glycine max]
          Length = 500

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 134/261 (51%), Gaps = 22/261 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ GW      D+   F  EM E GV P+VVTYN L++  C+           + I 
Sbjct: 208 FNILLSGWKTPEDADL---FFKEMKEMGVTPDVVTYNSLMDVYCK----------GREIE 254

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ DEMR +   PDV +++ ++       QP  + + L  MKE G  P  A Y++ +
Sbjct: 255 KAYKMLDEMRDQDFSPDVITYTCIIGGLGLIGQPDKARNVLKEMKEYGCYPDAAAYNAAI 314

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C   R+ DA  L+ EMV  G+ P+A TYN FF+ +    D   +  +Y++M  +G C
Sbjct: 315 RNFCIAKRLGDAHGLVEEMVTKGLSPNATTYNLFFRVFYWSNDLQSSWNMYQRMMVEG-C 373

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM----LIHGLCEKQKWK 237
           +PN  S   LI +F    +++M  + W D+   G G    SYT+    L   LC+  K +
Sbjct: 374 LPNTQSCMFLIRLFRRHEKVEMALQFWGDMVEKGFG----SYTLVSDVLFDLLCDMGKLE 429

Query: 238 EACQYFVEMIEKGLLPQKVTF 258
           EA + F+EM+EKG  P  V+F
Sbjct: 430 EAEKCFLEMVEKGQKPSHVSF 450



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 2/154 (1%)

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           EDA+    EM   GV P   TYN     Y   ++   A K+  +M++     P++ +Y  
Sbjct: 219 EDADLFFKEMKEMGVTPDVVTYNSLMDVYCKGREIEKAYKMLDEMRDQDFS-PDVITYTC 277

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           +IG    + + D  R +  ++K  G  PD  +Y   I   C  ++  +A     EM+ KG
Sbjct: 278 IIGGLGLIGQPDKARNVLKEMKEYGCYPDAAAYNAAIRNFCIAKRLGDAHGLVEEMVTKG 337

Query: 251 LLPQKVTFETLYRGLIQS-DMLRTWRRLKKKLDE 283
           L P   T+   +R    S D+  +W   ++ + E
Sbjct: 338 LSPNATTYNLFFRVFYWSNDLQSSWNMYQRMMVE 371


>gi|308082018|ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea mays]
 gi|238014984|gb|ACR38527.1| unknown [Zea mays]
 gi|414872746|tpg|DAA51303.1| TPA: hypothetical protein ZEAMMB73_971718 [Zea mays]
          Length = 623

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 137/277 (49%), Gaps = 11/277 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L++GWCK   +  A   + EM   G  P+V TY  L+   C           EK  +
Sbjct: 304 FNTLVHGWCKARMLKEARETMKEMERHGFSPSVTTYTCLIEAYC----------MEKDFQ 353

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             + + DEM  +G  P++ +++IV+H   +A + Q +LD  + +K+ G     + Y+ ++
Sbjct: 354 TVDGILDEMHTKGCTPNIITYTIVMHALGKAGRTQEALDTFDKVKQDGCALDASFYNCLI 413

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR++DA  ++ EM R G+ P+  T+N           A  A+KL  QM+E   C
Sbjct: 414 YILCRAGRLQDANFVVEEMHRTGISPNLTTFNTLISAACDHSLAENALKLLVQMEEQS-C 472

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  L+ +      +  +  +   +    + PD  +YT+L+  LC   +  ++C 
Sbjct: 473 NPDIKTYTPLLKLCCRRKWVKTLLFLICHMFRKDITPDFSTYTLLVCWLCRNGRLTQSCL 532

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
           +  EM+ KG  PQ+ TF+ +   L    ML   R+++
Sbjct: 533 FLEEMVLKGFTPQQATFDLVLEKLKNMHMLSAVRKIQ 569



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 116/275 (42%), Gaps = 12/275 (4%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           K  + D+    +G+M E G   ++ T   ++  +C       + R+   I      F +M
Sbjct: 209 KFKQFDLMCGLIGQMHEIGGLVSLATMTKVMRRLC------GANRWSDAI----DAFHKM 258

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
              G+  D  + +++L    +    + +      +K   I P  ++++++V   C    +
Sbjct: 259 DRFGVAKDTKAMNVLLDTLCKERSVKRARGAFQALKGT-IPPDESSFNTLVHGWCKARML 317

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           ++A E + EM R+G  PS  TY C  + Y   KD      +  +M   G C PN+ +Y I
Sbjct: 318 KEARETMKEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKG-CTPNIITYTI 376

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           ++       R     + ++ VK  G   D   Y  LI+ LC   + ++A     EM   G
Sbjct: 377 VMHALGKAGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDANFVVEEMHRTG 436

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           + P   TF TL        +     +L  +++E+S
Sbjct: 437 ISPNLTTFNTLISAACDHSLAENALKLLVQMEEQS 471


>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 482

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 145/268 (54%), Gaps = 14/268 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++ GWC I R   A   L EM+ERG+ PN+ TYN++LNG  R    + +  F     
Sbjct: 199 YNIIVNGWCLIKRTPKALEMLKEMVERGLTPNLTTYNIMLNGYFRAGQTNEAWGF----- 253

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                F EM+ R  + DV +++ V+H      + + + +  N M + G+ P+VAT+++++
Sbjct: 254 -----FLEMKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFNALI 308

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC    +E+A  +  EMV+ G  P++ TYN   +      +   AM+L  +M++D  C
Sbjct: 309 QILCKKDSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELMERMEDDD-C 367

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE--- 238
            PN+ +YNILI  F     ++   +++  +      P+LD+Y +LI+ +  ++       
Sbjct: 368 EPNVQTYNILIRYFCDAGEIEKGLDLFQKMGNGDCLPNLDTYNILINSMFVRKNSDNLLV 427

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           A +  VEM+++G LP+K+TF  +  GL+
Sbjct: 428 AGKLLVEMVDRGFLPRKLTFNRVLDGLL 455



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 110/221 (49%), Gaps = 16/221 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTS+I+G   +  I  A     +M++ GV P+V T+N L+  +C++ S          + 
Sbjct: 269 YTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFNALIQILCKKDS----------VE 318

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA  +F+EM  RG  P+  ++++V+       + Q +++ +  M++    P V TY+ ++
Sbjct: 319 NAILIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELMERMEDDDCEPNVQTYNILI 378

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG---AMKLYRQMKED 178
           +  C  G IE   +L  +M      P+ +TYN        RK+++    A KL  +M + 
Sbjct: 379 RYFCDAGEIEKGLDLFQKMGNGDCLPNLDTYNILINSMFVRKNSDNLLVAGKLLVEMVDR 438

Query: 179 GLCVPNMHSYN-ILIGMFMALNRMDMVREIWNDVKGSGLGP 218
           G  +P   ++N +L G+ +  N+ D  +EI +   G G  P
Sbjct: 439 GF-LPRKLTFNRVLDGLLLTGNQ-DFAKEILSLQGGCGRLP 477



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 107/222 (48%), Gaps = 2/222 (0%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  VF  M   G   D++SF+ +L V  ++ + +++ +    +K K     V+ Y+ +V 
Sbjct: 146 AVTVFMSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNLFKALKGKFKADCVS-YNIIVN 204

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C   R   A E+L EMV  G+ P+  TYN     Y      N A   + +MK+   C 
Sbjct: 205 GWCLIKRTPKALEMLKEMVERGLTPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRK-CD 263

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
            ++ +Y  +I     +  +   R ++N +   G+ P + ++  LI  LC+K   + A   
Sbjct: 264 IDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAILI 323

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
           F EM+++G +P  +T+  + RGL     ++    L ++++++
Sbjct: 324 FEEMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELMERMEDD 365


>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 137/254 (53%), Gaps = 12/254 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GWCK+  +  A     EMI++G +P++V +N++L G+ R           K   
Sbjct: 235 YTVLLNGWCKVKNLMEAGSVWNEMIDKGFKPDIVAHNIMLEGLLR----------SKQRS 284

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+F  M+ +G  PDV S++I++    R  + + +++    M + G  P  A Y+ ++
Sbjct: 285 DAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLI 344

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               +  R++   +LL EM   G  P   TYN   K     K  + A ++Y++M + G+ 
Sbjct: 345 TGFGNRKRMDMVYDLLKEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGI- 403

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P +H+YN+++  +      +M R +W+++   G  PD +SYT+LI GL  + +  EAC+
Sbjct: 404 EPTIHTYNMIMKSYFQTRNYEMGRAVWDEMSRKGFCPDDNSYTVLIGGLISQGRSGEACK 463

Query: 242 YFVEMIEKGL-LPQ 254
           Y  EM+EKG+  PQ
Sbjct: 464 YLEEMLEKGMKAPQ 477



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 103/237 (43%), Gaps = 46/237 (19%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
           PN+ TY VLLNG C+           K +  A  V++EM  +G +PD+ + +I+L    R
Sbjct: 230 PNLRTYTVLLNGWCKV----------KNLMEAGSVWNEMIDKGFKPDIVAHNIMLEGLLR 279

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
           + Q   ++     MK KG  P V +Y+ +++ LC   ++E+A E   EM+ +G       
Sbjct: 280 SKQRSDAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSG------- 332

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
                                        C P+   Y  LI  F    RMDMV ++  ++
Sbjct: 333 -----------------------------CKPDAAVYTCLITGFGNRKRMDMVYDLLKEM 363

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           K  G  PD  +Y  LI  +   +   +A + + +M + G+ P   T+  + +   Q+
Sbjct: 364 KEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSYFQT 420



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 124/259 (47%), Gaps = 15/259 (5%)

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
           ++G E +  TYN ++      + L  + +FE  +     + +EM  +G+   + +FSI +
Sbjct: 122 KQGFEHDSRTYNSMM------SILAKTRQFETVV----SMLEEMGGKGVLT-MDTFSIAM 170

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
             ++ A + + ++     MK+      V T + ++  L      ++A+ L  E ++    
Sbjct: 171 RAFAAAKERKKAVAMFELMKKYNYKVGVETINHLLDSLGRAKLGKEAQALF-ENLKGRFT 229

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVR 205
           P+  TY      +   K+   A  ++ +M + G   P++ ++NI++ G+  +  R D ++
Sbjct: 230 PNLRTYTVLLNGWCKVKNLMEAGSVWNEMIDKGF-KPDIVAHNIMLEGLLRSKQRSDAIK 288

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            ++  +K  G  PD+ SYT+LI  LC + K +EA +YF EMI+ G  P    +  L  G 
Sbjct: 289 -LFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGF 347

Query: 266 IQSDMLRTWRRLKKKLDEE 284
                +     L K++ EE
Sbjct: 348 GNRKRMDMVYDLLKEMKEE 366



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 89/214 (41%), Gaps = 11/214 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI   C+ ++++ A  +  EMI+ G +P+   Y  L+ G   R          K + 
Sbjct: 305 YTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNR----------KRMD 354

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +  EM+  G  PD  +++ ++ + +R   P  +      M + GI PT+ TY+ ++
Sbjct: 355 MVYDLLKEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIM 414

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K        E    +  EM R G CP   +Y         +  +  A K   +M E G+ 
Sbjct: 415 KSYFQTRNYEMGRAVWDEMSRKGFCPDDNSYTVLIGGLISQGRSGEACKYLEEMLEKGMK 474

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            P +  YN            D++ E+   +K SG
Sbjct: 475 APQL-DYNKFGADLSRGGNPDILEELAQRLKFSG 507



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 10/155 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G+    R+DM    L EM E G  P+ +TYN L+  + R           K  
Sbjct: 339 VYTCLITGFGNRKRMDMVYDLLKEMKEEGCPPDGLTYNALIKLMTRL----------KMP 388

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A +++ +M   GIEP + ++++++  Y +    ++     + M  KG CP   +Y+ +
Sbjct: 389 DDAARIYKKMTQSGIEPTIHTYNMIMKSYFQTRNYEMGRAVWDEMSRKGFCPDDNSYTVL 448

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           +  L S GR  +A + L EM+  G+      YN F
Sbjct: 449 IGGLISQGRSGEACKYLEEMLEKGMKAPQLDYNKF 483



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 123/299 (41%), Gaps = 13/299 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S++    K  + +     L EM  +GV    +T +     +  RA     ER     +
Sbjct: 132 YNSMMSILAKTRQFETVVSMLEEMGGKGV----LTMDTF--SIAMRAFAAAKER-----K 180

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F+ M+    +  V + + +L    RA   + +      +K +   P + TY+ ++
Sbjct: 181 KAVAMFELMKKYNYKVGVETINHLLDSLGRAKLGKEAQALFENLKGR-FTPNLRTYTVLL 239

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    + +A  +  EM+  G  P    +N   +     K  + A+KL+  MK  G  
Sbjct: 240 NGWCKVKNLMEAGSVWNEMIDKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPS 299

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SY ILI      ++M+   E + ++  SG  PD   YT LI G   +++      
Sbjct: 300 -PDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVYD 358

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
              EM E+G  P  +T+  L + + +  M     R+ KK+ +  I       N   K Y
Sbjct: 359 LLKEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSY 417


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 151/295 (51%), Gaps = 22/295 (7%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI   C++N +D A    G+M + G++P+V+T+  L+NGVC           E  I+ A 
Sbjct: 134 LINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCN----------EGKIKVAV 183

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           ++++EM   G EPDV S++ +++    +    +++     M++ G  P V TY++++  L
Sbjct: 184 ELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSL 243

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C    + DA + L EMV  G+ P A TYN            N A +L+++M+++G C P+
Sbjct: 244 CKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNG-CKPD 302

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +YNI+I        ++   +  +++   G+ PD+ +YT ++HGLC   +  EA + F 
Sbjct: 303 VVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFK 362

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
           +M +KG  P  V + T+   L            K +L  +++ F SE  +    P
Sbjct: 363 KMEQKGCKPDVVAYNTIIDSLC-----------KDRLVNDAMEFLSEMVDRGIPP 406



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 141/285 (49%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++++G C + +++ A R   +M ++G +P+VV YN +++ +C+          ++ + 
Sbjct: 341 YTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCK----------DRLVN 390

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A +   EM  RGI P+  ++S +LH +    Q   +      M  + + P   T+S +V
Sbjct: 391 DAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILV 450

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G + +A  +   M   GV P+  TYN     Y  R   N A K++  M   G C
Sbjct: 451 DGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKG-C 509

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++HSYNILI  +    RMD  + +   +    L P+  +Y  ++ GLC   +  +A +
Sbjct: 510 APDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQE 569

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F +M   G+LP  +T+  L  GL +   L    +L K + E+ +
Sbjct: 570 LFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKL 614



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 152/339 (44%), Gaps = 59/339 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y ++I   CK   ++ A  FL EM+ RG+ P+ +TYN +++G+C    L+ + R      
Sbjct: 236 YNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRME 295

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               ++ + +A     EM  +GI PDV +++ +LH      Q  
Sbjct: 296 QNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLN 355

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++     M++KG  P V  Y++++  LC    + DA E L EMV  G+ P+A TY+   
Sbjct: 356 EAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTIL 415

Query: 157 KEYRGRKDANGAMKLYRQMKE--------------DGLCV-------------------- 182
             +      + A +L+++M                DGLC                     
Sbjct: 416 HGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVE 475

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN+++YN L+  +    +M+  R+++  + G G  PDL SY +LI+G C  ++  +A   
Sbjct: 476 PNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKAL 535

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
             +M  K L P  VT+ T+ +GL     L   + L KK+
Sbjct: 536 LTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKM 574



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 146/310 (47%), Gaps = 26/310 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA----SLHPSERFE 57
           +T+LI G C   +I +A     EM+  G EP+V++YN L+NG+C       ++H  ++ E
Sbjct: 166 FTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKME 225

Query: 58  KT---------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +                      + +A     EM  RGI PD  +++ ++H      Q  
Sbjct: 226 QNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLN 285

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      M++ G  P V TY+ ++  L     + DA + L EMV  G+ P   TY    
Sbjct: 286 EATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTIL 345

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    N A++L+++M++ G C P++ +YN +I        ++   E  +++   G+
Sbjct: 346 HGLCYLGQLNEAIRLFKKMEQKG-CKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGI 404

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  +Y+ ++HG C   +  EA Q F EM+ + ++P  +TF  L  GL Q  M+   R 
Sbjct: 405 PPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARW 464

Query: 277 LKKKLDEESI 286
           + + + E+ +
Sbjct: 465 VFETMTEKGV 474



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 130/243 (53%), Gaps = 13/243 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ L+ G C+   +  A      M E+GVEPN+ TYN L+NG C R  ++          
Sbjct: 446 FSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMN---------- 495

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KVF+ M  +G  PD+ S++I+++ Y  + +   +   L  M  K + P   TY++++
Sbjct: 496 EARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIM 555

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC  GR+ DA+EL  +M  +G+ P+  TY+            + A+KL++ MKE  L 
Sbjct: 556 KGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKL- 614

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            P++  Y ILI GMF+   ++++ + +++ +   G+ P   +Y ++I GL ++    EA 
Sbjct: 615 EPDIILYTILIEGMFIG-GKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAY 673

Query: 241 QYF 243
           + F
Sbjct: 674 ELF 676



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 149/289 (51%), Gaps = 22/289 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++++G+C + ++D A +   EM+ R V PN +T+++L++G+C+          E  + 
Sbjct: 411 YSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQ----------EGMVS 460

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  VF+ M  +G+EP++ +++ +++ Y    +   +      M  KG  P + +Y+ ++
Sbjct: 461 EARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILI 520

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE--YRGRKDANGAMKLYRQMKEDG 179
              C+  R++ A+ LL +M    + P+  TYN   K   Y GR     A +L+++M   G
Sbjct: 521 NGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGR--LLDAQELFKKMCSSG 578

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           + +P + +Y+IL+        +D   +++  +K   L PD+  YT+LI G+    K + A
Sbjct: 579 M-LPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVA 637

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQS-------DMLRTWRRLKKKL 281
              F ++   G+ P   T+  + +GL++        ++ R W+ +K  +
Sbjct: 638 KGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWKMMKHNV 686



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 112/219 (51%), Gaps = 1/219 (0%)

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127
           ++M + G+   V S +I+++   R +    ++     M + GI P V T+++++  +C+ 
Sbjct: 117 NQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNE 176

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
           G+I+ A EL  EMVR+G  P   +YN          + N A+ ++++M+++G C PN+ +
Sbjct: 177 GKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNG-CKPNVVT 235

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           YN +I        ++   +  +++ G G+ PD  +Y  ++HGLC   +  EA + F  M 
Sbjct: 236 YNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRME 295

Query: 248 EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           + G  P  VT+  +   L +  ++        ++ ++ I
Sbjct: 296 QNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGI 334



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 95/191 (49%), Gaps = 18/191 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C   R+D A+  L +M  + + PN VTYN ++ G+C    L           
Sbjct: 516 YNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRL----------L 565

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A+++F +M   G+ P + ++SI+L+   +      +L     MKEK + P +  Y+ ++
Sbjct: 566 DAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILI 625

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + +   G++E A+ L  ++  +G+ P   TYN   K       ++ A +L+R+ K     
Sbjct: 626 EGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWK----- 680

Query: 182 VPNMHSYNILI 192
              M  +N++I
Sbjct: 681 ---MMKHNVII 688



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 100/226 (44%), Gaps = 1/226 (0%)

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           ++ +A   F  M      P +  F   L   ++  Q    +   N M   G+  TV + +
Sbjct: 73  SVDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLN 132

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++ CLC    ++ A  + G+M + G+ P   T+               A++LY +M   
Sbjct: 133 ILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRS 192

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G   P++ SYN LI         +M   ++  ++ +G  P++ +Y  +I  LC+ +   +
Sbjct: 193 GH-EPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVND 251

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
           A  +  EM+ +G+ P  +T+ ++  GL     L    RL K++++ 
Sbjct: 252 AMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQN 297


>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 549

 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 144/277 (51%), Gaps = 11/277 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L++GWCK   ++ A   + EM E G +P+V+TY  L+   C           EK  +
Sbjct: 267 FNTLVHGWCKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYC----------MEKDFQ 316

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + +EMR +G  P+V +++IV+H   +A + Q +LD  + ++  G  P  + Y+S++
Sbjct: 317 TVYAILNEMRSKGCPPNVITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLI 376

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+EDA  ++ +M   GV P+  T+N           A  A+K+  +M+E   C
Sbjct: 377 YILGRAGRLEDANSVVDKMRMTGVRPTVATFNTLISAACDHSQAENALKMLVKMEEQS-C 435

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  L+ +      + ++R +   +    + PD  +YT+L+  LC   K  ++C 
Sbjct: 436 KPDIKTYTPLLKLCCKRQWIKVLRFLICHMFRKDITPDFSTYTLLVTWLCRNGKPAQSCL 495

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
           +  EM+ KG  P+K TF+ +   L ++++    ++++
Sbjct: 496 FLEEMVLKGFAPKKETFDLVAEKLDKANLHSAKKKIQ 532



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 126/274 (45%), Gaps = 14/274 (5%)

Query: 22  LGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81
             +M + GV  +    NVLL+ +C+          E++++ A   F E+R   + PD +S
Sbjct: 218 FNKMDQFGVVKDTTAMNVLLDTLCK----------ERSVKRARGAFQELR-GSVPPDESS 266

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           F+ ++H + +A     + D +  M+E G  P+V TY+S+++  C     +    +L EM 
Sbjct: 267 FNTLVHGWCKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMR 326

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
             G  P+  TY               A+ ++ +++ DG C P+   YN LI +     R+
Sbjct: 327 SKGCPPNVITYTIVMHALGKAGRTQEALDIFDKVRGDG-CAPDASFYNSLIYILGRAGRL 385

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +    + + ++ +G+ P + ++  LI   C+  + + A +  V+M E+   P   T+  L
Sbjct: 386 EDANSVVDKMRMTGVRPTVATFNTLISAACDHSQAENALKMLVKMEEQSCKPDIKTYTPL 445

Query: 262 YRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
            +   +   ++  R L   +  + IT   +F  Y
Sbjct: 446 LKLCCKRQWIKVLRFLICHMFRKDIT--PDFSTY 477


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 137/285 (48%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I G CK+    MA + L +M E+G +PNVV YN +++ +C+          ++ + 
Sbjct: 48  YSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCK----------DRLVT 97

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A   F EM   GI PDV ++S +LH +    +   +      M E+ + P   T++ ++
Sbjct: 98  EAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILI 157

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    I +A  +   M   G+ P   TYN     Y  R   + A KL+  M   G C
Sbjct: 158 DGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKG-C 216

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ SYNILI       R+D  + +  ++    L PD+ +Y+ L+ G C+  + +EA +
Sbjct: 217 APNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQE 276

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM   GLLP  +T+  +  GL +   L     L K + E  I
Sbjct: 277 LLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKI 321



 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 142/269 (52%), Gaps = 11/269 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+++G+C + R++ A     +M+ER V PN VT+ +L++G+C++          + I 
Sbjct: 118 YSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKK----------RMIS 167

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  VF+ M  +G+EPDV +++ ++  Y    Q   +    N M  KG  P V +Y+ ++
Sbjct: 168 EAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILI 227

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GRI++A+ LL EM    + P   TY+   + +        A +L ++M   GL 
Sbjct: 228 NGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGL- 286

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+ +Y+I++        +D   E+   ++ S + P++  YT+LI G+C   K + A +
Sbjct: 287 LPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARE 346

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
            F  +  KG+ P  VT+  +  GL++  +
Sbjct: 347 LFSNLFVKGIQPTVVTYTVMISGLLKGGL 375



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 142/267 (53%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI G CK   I  A      M E+G+EP+V TYN L++G C R+ +           
Sbjct: 153 FTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMD---------- 202

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+K+F+ M  +G  P+V S++I+++ + ++ +   +   L  M  K + P + TYS+++
Sbjct: 203 EAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLM 262

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  GR ++A+ELL EM   G+ P+  TY+            + A +L + M+E  + 
Sbjct: 263 RGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKI- 321

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+  Y ILI       +++  RE+++++   G+ P + +YT++I GL +     EAC+
Sbjct: 322 EPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACE 381

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F EM   G LP   T+  + +G +++
Sbjct: 382 LFREMAVNGCLPNSCTYNVIIQGFLRN 408



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 140/291 (48%), Gaps = 44/291 (15%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M + G++P +VT+N LL+G+C +A           I +A K+FDEM   G EPDV ++S 
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAK----------IMDAVKLFDEMVKMGHEPDVITYST 50

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           +++   +     ++L  L  M+EKG  P V  Y++++  LC    + +A +   EMV+ G
Sbjct: 51  IINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEG 110

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE--------------DGLCV-------- 182
           + P   TY+     +      N A  L++QM E              DGLC         
Sbjct: 111 IPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAW 170

Query: 183 ------------PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
                       P++++YN L+  + + ++MD  ++++N +   G  P++ SY +LI+G 
Sbjct: 171 LVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGH 230

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           C+  +  EA     EM  K L P   T+ TL RG  Q    +  + L K++
Sbjct: 231 CKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEM 281



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 102/203 (50%), Gaps = 18/203 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++L+ G+C++ R   A+  L EM   G+ PN++TY+++L+G+C+    H  E FE    
Sbjct: 258 YSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHG--HLDEAFE---- 311

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +   M+   IEP++  ++I++       + + + +  + +  KGI PTV TY+ ++
Sbjct: 312 ----LLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMI 367

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G   +A EL  EM  NG  P++ TYN   + +    D   A++L  +M   G  
Sbjct: 368 SGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFS 427

Query: 182 --------VPNMHSYNILIGMFM 196
                   + ++ S + +I  FM
Sbjct: 428 ADSSTFRMLSDLESSDEIISQFM 450



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 36/182 (19%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M + G+ PT+ T+++++  LCS  +I DA +L  EMV+ G  P   TY+           
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTII-------- 52

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
                        +GLC                +    M  ++   ++  G  P++ +Y 
Sbjct: 53  -------------NGLC---------------KMGNTTMALQLLKKMEEKGCKPNVVAYN 84

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            +I  LC+ +   EA  +F EM+++G+ P   T+ ++  G      +     L K++ E 
Sbjct: 85  TIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVER 144

Query: 285 SI 286
           ++
Sbjct: 145 NV 146



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 66/142 (46%), Gaps = 17/142 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G C   +++ A      +  +G++P VVTY V+++G+ +              
Sbjct: 327 IYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGG----------LS 376

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++F EM V G  P+  ++++++  + R      ++  +  M  KG     +T+  +
Sbjct: 377 NEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRML 436

Query: 121 VKCLCSCGRIEDAEELLGEMVR 142
                    +E ++E++ + +R
Sbjct: 437 -------SDLESSDEIISQFMR 451


>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
 gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
          Length = 613

 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 142/277 (51%), Gaps = 11/277 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L++GWCK   +  A   + EM + G  P+VVTY  L+   C           EK  +
Sbjct: 332 FNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYC----------MEKDFQ 381

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + DEMR R   P+V +++I++H   +A + + +LD  + +KE G+ P  + Y+S++
Sbjct: 382 TVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLI 441

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+EDA  ++ EM   G+ P+  T+N           A  A+KL  +M+E   C
Sbjct: 442 YILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQS-C 500

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  L+ +      + ++  +   +    + PD  +YT+L+  LC   K  ++C 
Sbjct: 501 NPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCL 560

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
           +  EM+ KG  P++ TF+ +   L + ++   +++++
Sbjct: 561 FLEEMVSKGFAPKQETFDLVMEKLEKRNLQSVYKKIQ 597



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 114/235 (48%), Gaps = 12/235 (5%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           GV  +    NVLL+ +C+          E++++ A  VF E+R   I PD  SF+ ++H 
Sbjct: 290 GVVKDTKAMNVLLDTLCK----------ERSVKRARGVFQELR-GTIPPDENSFNTLVHG 338

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           + +A   + +LD +  MK+ G  P+V TY+S+V+  C     +    LL EM +    P+
Sbjct: 339 WCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPN 398

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             TY               A+  + ++KEDG+  P+   YN LI +     R++    + 
Sbjct: 399 VVTYTILMHALGKAGRTREALDTFDKLKEDGV-APDASFYNSLIYILGRAGRLEDAYSVV 457

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            +++ +G+ P++ ++  LI   C+  + + A +  V+M E+   P   T+  L +
Sbjct: 458 EEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLK 512



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 90/214 (42%), Gaps = 2/214 (0%)

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           S+ +++ +  +  Q  L    +N M E G   ++ T + V++ L    R  +A +   +M
Sbjct: 227 SYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKM 286

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
            R GV    +  N         +    A  ++++++  G   P+ +S+N L+  +     
Sbjct: 287 DRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELR--GTIPPDENSFNTLVHGWCKARM 344

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           +    +   ++K  G  P + +YT L+   C ++ ++       EM ++   P  VT+  
Sbjct: 345 LKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTI 404

Query: 261 LYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           L   L ++   R       KL E+ +   + F N
Sbjct: 405 LMHALGKAGRTREALDTFDKLKEDGVAPDASFYN 438


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  144 bits (362), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 136/276 (49%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G CKI     A     +M E G +PNVVTYN+L++ +C+          +K + 
Sbjct: 203 YTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCK----------DKLVN 252

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F  M+ + I PD+ +++ ++       + + +   LN M    I P + T++ +V
Sbjct: 253 EALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLV 312

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G++ +A+ +   M   GV P   TY+     Y  R +   A KL+  M   G C
Sbjct: 313 DAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKG-C 371

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  SYNILI  +    R+D  ++++N++   GL PD  +Y  LIHGLC+  + +EA  
Sbjct: 372 KPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQD 431

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F  M   G LP   T+  L  G  +   L    RL
Sbjct: 432 LFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRL 467



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 145/282 (51%), Gaps = 15/282 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G CK+ +   A  F  +    G +P V TY  ++NG+C+          E T  
Sbjct: 168 FNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIG--------ETTA- 218

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F +M   G +P+V +++I++    +      +LD  ++MK K I P + TY+S++
Sbjct: 219 -AAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLI 277

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC+  R ++A  LL EM    + P+  T+N            + A  +++ M E G+ 
Sbjct: 278 QGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGV- 336

Query: 182 VPNMHSYNILIGMFMALNRMDMV--REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            P++ +Y+ L  M+    RM++V  R++++ +   G  PD  SY +LI G C+ ++  EA
Sbjct: 337 EPDVVTYSSL--MYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEA 394

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            Q F EMI +GL P  V + TL  GL Q   LR  + L K +
Sbjct: 395 KQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNM 436



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 135/291 (46%), Gaps = 26/291 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           Y SLI G C   R   A   L EM    + PN+ T+NVL++ +C+   +  ++   KT  
Sbjct: 273 YNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMT 332

Query: 60  -----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  I  A K+FD M  +G +PD  S++I++  Y +A +  
Sbjct: 333 EMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRID 392

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    N M  +G+ P    Y++++  LC  GR+ +A++L   M  NG  P   TY+   
Sbjct: 393 EAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLL 452

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +        A +L+R M+   L  P++  YNILI        +   R++++++   GL
Sbjct: 453 DGFCKEGYLGKAFRLFRVMQSTYL-KPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGL 511

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            P++  YT +I+ LC++    EA + F  M   G  P + ++  + RG +Q
Sbjct: 512 LPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQ 562



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 129/289 (44%), Gaps = 15/289 (5%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           ID A      M+ R   P ++ +  LL+ + +    + +            +  +M + G
Sbjct: 75  IDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGA---------VISLSKQMELAG 125

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           + PD+ + SI++  +S   +  L+    + M + G+ P   T+++++  LC  G+   A 
Sbjct: 126 LSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAV 185

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           E   +   +G  P+  TY           +   A  L+++M+E G C PN+ +YNILI  
Sbjct: 186 EFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAG-CQPNVVTYNILIDS 244

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                 ++   +I++ +K   + PD+ +Y  LI GLC  ++WKEA     EM    ++P 
Sbjct: 245 LCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPN 304

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKKLDE-----ESITFGSEFQNYHFK 298
             TF  L   + +   +   + + K + E     + +T+ S    Y  +
Sbjct: 305 IFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLR 353



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 96/204 (47%), Gaps = 25/204 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CK  RID A++   EMI +G+ P+ V YN L++G+C+   L  ++   K + 
Sbjct: 378 YNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMH 437

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +                         A ++F  M+   ++PD+  ++I++    +    +
Sbjct: 438 SNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLK 497

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    + +  +G+ P V  Y++++  LC  G +++A E    M  +G  P   +YN   
Sbjct: 498 DARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVII 557

Query: 157 KEYRGRKDANGAMKLYRQMKEDGL 180
           + +   KD + A +L  +M++ G 
Sbjct: 558 RGFLQYKDESRAAQLIGEMRDRGF 581



 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 10/116 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY  LI   CK   +  A +   E+  +G+ PNV  Y  ++N +C+          E  +
Sbjct: 482 MYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCK----------EGLL 531

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
             A + F  M   G  PD  S+++++  + +      +   +  M+++G      T
Sbjct: 532 DEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAGT 587


>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
          Length = 554

 Score =  144 bits (362), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 142/277 (51%), Gaps = 11/277 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L++GWCK   +  A   + EM + G  P+VVTY  L+   C           EK  +
Sbjct: 273 FNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYC----------MEKDFQ 322

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + DEMR R   P+V +++I++H   +A + + +LD  + +KE G+ P  + Y+S++
Sbjct: 323 TVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLI 382

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+EDA  ++ EM   G+ P+  T+N           A  A+KL  +M+E   C
Sbjct: 383 YILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQS-C 441

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  L+ +      + ++  +   +    + PD  +YT+L+  LC   K  ++C 
Sbjct: 442 NPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCL 501

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
           +  EM+ KG  P++ TF+ +   L + ++   +++++
Sbjct: 502 FLEEMVSKGFAPKQETFDLVMEKLEKRNLQSVYKKIQ 538



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 114/235 (48%), Gaps = 12/235 (5%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           GV  +    NVLL+ +C+          E++++ A  VF E+R   I PD  SF+ ++H 
Sbjct: 231 GVVKDTKAMNVLLDTLCK----------ERSVKRARGVFQELR-GTIPPDENSFNTLVHG 279

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           + +A   + +LD +  MK+ G  P+V TY+S+V+  C     +    LL EM +    P+
Sbjct: 280 WCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPN 339

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             TY               A+  + ++KEDG+  P+   YN LI +     R++    + 
Sbjct: 340 VVTYTILMHALGKAGRTREALDTFDKLKEDGV-APDASFYNSLIYILGRAGRLEDAYSVV 398

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            +++ +G+ P++ ++  LI   C+  + + A +  V+M E+   P   T+  L +
Sbjct: 399 EEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLK 453



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 90/214 (42%), Gaps = 2/214 (0%)

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           S+ +++ +  +  Q  L    +N M E G   ++ T + V++ L    R  +A +   +M
Sbjct: 168 SYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKM 227

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
            R GV    +  N         +    A  ++++++  G   P+ +S+N L+  +     
Sbjct: 228 DRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELR--GTIPPDENSFNTLVHGWCKARM 285

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           +    +   ++K  G  P + +YT L+   C ++ ++       EM ++   P  VT+  
Sbjct: 286 LKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTI 345

Query: 261 LYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           L   L ++   R       KL E+ +   + F N
Sbjct: 346 LMHALGKAGRTREALDTFDKLKEDGVAPDASFYN 379


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 143/269 (53%), Gaps = 11/269 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+++G+C + R + A     +M+ER V P+ VT+N+L++G+ +          E  I 
Sbjct: 155 YSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSK----------EGMIL 204

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ VF+ M  +G+EP+V +++ ++  Y    Q   +    N M  KG  P+V +Y+ ++
Sbjct: 205 EAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILI 264

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C  GRI++A+ LL EM    + P   TY+   K +        A KL  +M+  GL 
Sbjct: 265 KGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGL- 323

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y+I++        +D   E+   ++ S + P++  YT+LI G+C   K + A +
Sbjct: 324 LPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARE 383

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
            F  +  KG+ P  VT+  +  GL++  +
Sbjct: 384 LFSNLFVKGIQPDVVTYTVMISGLLKGGL 412



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 151/315 (47%), Gaps = 46/315 (14%)

Query: 3   TSLIYGWCKINR--IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           T LI  +C  N      A   LG M + G++PN VT++ LLNG+  +A           I
Sbjct: 14  TILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAK----------I 63

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A K+FDEM   G EPDV ++S +++   +     +++  L  M+EKG  P V  YS++
Sbjct: 64  IDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTI 123

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE--- 177
           +  LC    I +A E L EMV  G+ P+  TY+     +     +N A  L++QM E   
Sbjct: 124 IDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNV 183

Query: 178 -----------DGL----------CV----------PNMHSYNILIGMFMALNRMDMVRE 206
                      DGL          CV          PN+++YN L+  + + ++MD  ++
Sbjct: 184 MPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQK 243

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++N +   G  P + SY +LI G C+  +  EA     EM  K L P  VT+ TL +G  
Sbjct: 244 LFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFC 303

Query: 267 QSDMLRTWRRLKKKL 281
           Q    +  ++L +++
Sbjct: 304 QDGRPQDAQKLLEEM 318



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 140/285 (49%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I G CK+    MA + L +M E+G +PNVV Y+ +++ +C+          +K I 
Sbjct: 85  YSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCK----------DKLIT 134

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +   EM  RGI P+V ++S +LH +    +   +      M E+ + P   T++ +V
Sbjct: 135 EAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILV 194

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G I +A+ +   M+  GV P+  TYN     Y  +   + A KL+  M   G C
Sbjct: 195 DGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKG-C 253

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SYNILI       R+D  + +  ++    L PD  +Y+ L+ G C+  + ++A +
Sbjct: 254 APSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQK 313

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM   GLLP  +T+  +  GL +   L     L K + E  I
Sbjct: 314 LLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKI 358



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 122/260 (46%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G+C  +++D A++    M+ +G  P+V +YN+L+ G C+             I 
Sbjct: 225 YNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGR----------ID 274

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +  EM  + + PD  ++S ++  + +  +PQ +   L  M+  G+ P + TYS V+
Sbjct: 275 EAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVL 334

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +++A ELL  M  + + P+   Y    +          A +L+  +   G+ 
Sbjct: 335 DGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGI- 393

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y ++I   +     +   E++ D+   G  P+  +Y ++I G         A +
Sbjct: 394 QPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGR 453

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              EM+ +G      TF+ L
Sbjct: 454 LIEEMVGRGFSADSSTFQML 473



 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 104/238 (43%), Gaps = 53/238 (22%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G CK  RID A+  L EM  + + P+ VTY+ L+ G C+     P        +
Sbjct: 260 YNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDG--RP--------Q 309

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLH----------------------------VYSRAH 93
           +A+K+ +EMR  G+ PD+ ++SIVL                             +Y+   
Sbjct: 310 DAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILI 369

Query: 94  QPQLSLDKLNFMKE-------KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
           Q   +  KL   +E       KGI P V TY+ ++  L   G   +A EL  +M  +G  
Sbjct: 370 QGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCL 429

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC--------VPNMHSYNILIGMFM 196
           P++ TYN   + +    D + A +L  +M   G          + ++ S + +I +FM
Sbjct: 430 PNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLSDLESRDEIISLFM 487



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 3/163 (1%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGR--IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR 162
           M    I P V T + ++ C C         A  +LG M + G+ P+  T++        +
Sbjct: 1   MDLSNIRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSK 60

Query: 163 KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS 222
                A+KL+ +M + G   P++ +Y+ +I     +    M  ++   ++  G  P++  
Sbjct: 61  AKIIDAVKLFDEMVKMGY-EPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVV 119

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           Y+ +I  LC+ +   EA ++  EM+ +G+ P  VT+ ++  G 
Sbjct: 120 YSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGF 162



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G C   +++ A      +  +G++P+VVTY V+++G+ +              
Sbjct: 364 IYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGG----------LS 413

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
             A ++F +M V G  P+  ++++++  + R
Sbjct: 414 NEACELFRDMAVHGCLPNSCTYNVIIQGFLR 444


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 137/280 (48%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CKI     A   L +M E G +PN+VTY+ L++ +CR          ++ + 
Sbjct: 201 YNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCR----------DRLVN 250

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F  M+ +GI PD+ +++ ++    +  + + +   LN M    I P + T++ +V
Sbjct: 251 EALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLV 310

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++ +A  +L  M   GV P+  TY+     Y    D   A KL+  M   G C
Sbjct: 311 DTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKG-C 369

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ SYNILI  +    R+D   +++N++   GL P+  SY  LIHG C+  K +EA  
Sbjct: 370 KPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQD 429

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            F  M   G LP   T+  L  G  +   L    RL + +
Sbjct: 430 LFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAM 469



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 143/280 (51%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G CK+     A     +M+ +G +P+V TYN ++NG+C+               
Sbjct: 166 FTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGE----------TA 215

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +M   G +P++ ++S ++    R      +LD  ++MK KGI P + TY+S++
Sbjct: 216 AAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLI 275

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC   R ++A  LL EM    + P   T+N     +      + A+ + + M E G+ 
Sbjct: 276 QGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGV- 334

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y+ L+  +     +   R++++ +   G  P++ SY +LI+G C+ ++  EA Q
Sbjct: 335 EPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQ 394

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            F EMI +GL P  V++ TL  G  Q   LR  + L + +
Sbjct: 395 LFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNM 434



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 144/292 (49%), Gaps = 28/292 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           YTSLI G CK +R   A   L EM    + P++VT+NVL++  C+   +  +    KT  
Sbjct: 271 YTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMT 330

Query: 60  -----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  +  A K+F  M  +G +P++ S++I+++ Y +A +  
Sbjct: 331 EMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRID 390

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++   N M  +G+ P   +Y++++   C  G++ +A++L   M  NG  P   TY+   
Sbjct: 391 EAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILL 450

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSG 215
             +  +     A +L+R M+   L  PN+  Y IL+  M  + N  D  R++++++   G
Sbjct: 451 DGFCKQGYLGKAFRLFRAMQSTYL-KPNLVMYTILVHAMCKSGNHKD-ARKLFSELFVQG 508

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           L P +  YT +I+GLC++    EA + F  M   G  P ++++  + RGL+Q
Sbjct: 509 LQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQ 560



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 119/247 (48%), Gaps = 10/247 (4%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           ID A      M+ R   P ++ +  LL+ + +        ++   + +  K   +M + G
Sbjct: 73  IDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMG------QYYDVVISLSK---QMELVG 123

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           + P++ + SI ++ + +  +  L    L  + + G+ PT+ T+++++  LC  G    A 
Sbjct: 124 LSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAV 183

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           EL  +MV  G  P   TYN          +   A  L ++M+E G C PNM +Y+ LI  
Sbjct: 184 ELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAG-CQPNMVTYSTLIDS 242

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                 ++   +I++ +K  G+ PD+ +YT LI GLC+  +WKEA     EM    ++P 
Sbjct: 243 LCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPD 302

Query: 255 KVTFETL 261
            VTF  L
Sbjct: 303 IVTFNVL 309



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 95/204 (46%), Gaps = 25/204 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  LI G+CK  RID A +   EMI +G+ PN V+YN L++G C+   L  ++       
Sbjct: 376 YNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMC 435

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +  +  A ++F  M+   ++P++  ++I++H   ++   +
Sbjct: 436 TNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHK 495

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    + +  +G+ P V  Y++++  LC  G +++A E    M  +G  P   +YN   
Sbjct: 496 DARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVII 555

Query: 157 KEYRGRKDANGAMKLYRQMKEDGL 180
           +     KD + A+ L  +M++ G 
Sbjct: 556 RGLLQHKDESRALLLVGEMRDRGF 579



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 1/116 (0%)

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
            + L +QM+  GL  PN+++ +I +  F  L R+D+   +   V   GL P + ++T LI
Sbjct: 112 VISLSKQMELVGLS-PNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLI 170

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           +GLC+  ++ +A + F +M+ KG  P   T+ T+  GL +         L KK++E
Sbjct: 171 NGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEE 226



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 97/244 (39%), Gaps = 46/244 (18%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ---PQLSLDKLNFMKEKGICPTV 114
           + I +A   F+ M  R   P +  F+ +L    +  Q     +SL K   M+  G+ P +
Sbjct: 71  RNIDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQ--MELVGLSPNI 128

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            T S  + C C   R++    +L ++++ G+ P+  T+                      
Sbjct: 129 YTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLI------------------ 170

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
              +GLC                +       E+++D+   G  PD+ +Y  +I+GLC+  
Sbjct: 171 ---NGLC---------------KVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIG 212

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGL----IQSDMLRTWRRLKKK-LDEESITFG 289
           +   A     +M E G  P  VT+ TL   L    + ++ L  +  +K K +  +  T+ 
Sbjct: 213 ETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYT 272

Query: 290 SEFQ 293
           S  Q
Sbjct: 273 SLIQ 276



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 10/114 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT L++  CK      A +   E+  +G++P+V  Y  ++NG+C+          E  +
Sbjct: 480 MYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCK----------EGLL 529

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV 114
             A + F  M   G  PD  S+++++    +      +L  +  M+++G    V
Sbjct: 530 DEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDRGFIADV 583


>gi|255578371|ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530468|gb|EEF32352.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 554

 Score =  143 bits (361), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 89/268 (33%), Positives = 138/268 (51%), Gaps = 13/268 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+C+  RID A+     M   G EP++VTYNV LN  C           E  +
Sbjct: 222 VYNALISGFCRAGRIDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCD----------ELML 271

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLS-LDKLNFMKEKGICPTVATYSS 119
            +A+K+   M   GIEPDV S++ +L    + + P  + L   N M  KG+C  V +Y++
Sbjct: 272 DDAKKLLKLMERSGIEPDVYSYNQLLKGICKGNCPDKAYLLMTNKMWPKGLCDVV-SYNT 330

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++K  C  G    A +L  EM + G+ P   T+  F K + G+   N A KL  QM E G
Sbjct: 331 IIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMG 390

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           L  P+   Y  +I       +++M   I+ D+   G+ PD+ S+  LI+G C+  +  EA
Sbjct: 391 LS-PDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSRVSEA 449

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              + EM  +G  P +VT++ +  GLI+
Sbjct: 450 MHLYEEMQNRGSYPDEVTYKLIIGGLIE 477



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 61/288 (21%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR-----RASLHPSER- 55
           Y   +  +C    +D A++ L  M   G+EP+V +YN LL G+C+     +A L  + + 
Sbjct: 258 YNVFLNYFCDELMLDDAKKLLKLMERSGIEPDVYSYNQLLKGICKGNCPDKAYLLMTNKM 317

Query: 56  ----------FEKTIR---------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                     +   I+         +A K+F+EM  +GI PDV +F+I +  +       
Sbjct: 318 WPKGLCDVVSYNTIIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFN 377

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           ++   L+ M E G+ P    Y++++  LC  G++E A  +  +MV  G+ P   ++N   
Sbjct: 378 IAKKLLDQMTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALI 437

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +      + AM LY +M+  G   P+  +Y ++IG                       
Sbjct: 438 NGFCKCSRVSEAMHLYEEMQNRG-SYPDEVTYKLIIG----------------------- 473

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
                       GL E++K   AC  + +M++KG    +   +TL RG
Sbjct: 474 ------------GLIEEKKISIACMVWGQMMDKGFTLDRAIAQTLIRG 509



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 128/280 (45%), Gaps = 22/280 (7%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           RID+A     ++++ G +P+VVTY ++++GVC+      + +F +          +M  +
Sbjct: 129 RIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQFWR----------DMIHK 178

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKL-NFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           G  PD  +   ++       +  L+ + + + MK   +  +   Y++++   C  GRI+ 
Sbjct: 179 GFSPDNKACGAIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTLVYNALISGFCRAGRIDK 238

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A+ +   M RNG  P   TYN F   +      + A KL + M+  G+  P+++SYN L+
Sbjct: 239 AQAIKSFMRRNGCEPDLVTYNVFLNYFCDELMLDDAKKLLKLMERSGI-EPDVYSYNQLL 297

Query: 193 GMFMALNRMD-----MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
                 N  D     M  ++W      GL  D+ SY  +I   C+      A + F EM 
Sbjct: 298 KGICKGNCPDKAYLLMTNKMWP----KGL-CDVVSYNTIIKAFCKIGDTTSAYKLFEEMG 352

Query: 248 EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +KG+ P  VTF    +  +        ++L  ++ E  ++
Sbjct: 353 QKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMGLS 392



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/360 (20%), Positives = 138/360 (38%), Gaps = 97/360 (26%)

Query: 2   YTSLIYGWCKI-----------------------------------NRIDMAERFLGEMI 26
           Y+  I G CK+                                    RID+A     +++
Sbjct: 82  YSRFITGLCKVKNFTFIDELLHDMETLNCLPDIWAFNIYLHLLFVEGRIDLALEVFEKIV 141

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPSERF--------------------------EKTI 60
           + G +P+VVTY ++++GVC+      + +F                           K  
Sbjct: 142 KNGRKPDVVTYTIIIHGVCKIKKFDTAIQFWRDMIHKGFSPDNKACGAIVVGLCDGRKVD 201

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              E + D M+   ++     ++ ++  + RA +   +    +FM+  G  P + TY+  
Sbjct: 202 LAYELIIDVMKSGRVKLSTLVYNALISGFCRAGRIDKAQAIKSFMRRNGCEPDLVTYNVF 261

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGV------------------CPSAE------------ 150
           +   C    ++DA++LL  M R+G+                  CP               
Sbjct: 262 LNYFCDELMLDDAKKLLKLMERSGIEPDVYSYNQLLKGICKGNCPDKAYLLMTNKMWPKG 321

Query: 151 -----TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
                +YN   K +    D   A KL+ +M + G+  P++ ++ I I  F+     ++ +
Sbjct: 322 LCDVVSYNTIIKAFCKIGDTTSAYKLFEEMGQKGI-PPDVVTFTIFIKAFLGKGSFNIAK 380

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           ++ + +   GL PD   YT +I  LC+  K + A   F +M+E+G+ P  ++F  L  G 
Sbjct: 381 KLLDQMTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALINGF 440



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 112/257 (43%), Gaps = 10/257 (3%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           +R D+A  +  +M  RG   +  TY+  + G+C+           K     +++  +M  
Sbjct: 58  SRFDLANHYYSQMGTRGFSLSSFTYSRFITGLCK----------VKNFTFIDELLHDMET 107

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
               PD+ +F+I LH+     +  L+L+    + + G  P V TY+ ++  +C   + + 
Sbjct: 108 LNCLPDIWAFNIYLHLLFVEGRIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDT 167

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A +   +M+  G  P  +            +  + A +L   + + G    +   YN LI
Sbjct: 168 AIQFWRDMIHKGFSPDNKACGAIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTLVYNALI 227

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
             F    R+D  + I + ++ +G  PDL +Y + ++  C++    +A +    M   G+ 
Sbjct: 228 SGFCRAGRIDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDELMLDDAKKLLKLMERSGIE 287

Query: 253 PQKVTFETLYRGLIQSD 269
           P   ++  L +G+ + +
Sbjct: 288 PDVYSYNQLLKGICKGN 304



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 42/209 (20%)

Query: 60  IRNAEKVFDEM---RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           I  A +VFDEM     R    D   F  VL  +SR     L+    + M  +G   +  T
Sbjct: 25  IDKAVQVFDEMSQSNCRVFSIDYNRFIGVLINHSRF---DLANHYYSQMGTRGFSLSSFT 81

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           YS  +  LC        +ELL +M         ET NC                      
Sbjct: 82  YSRFITGLCKVKNFTFIDELLHDM---------ETLNC---------------------- 110

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
                +P++ ++NI + +     R+D+  E++  +  +G  PD+ +YT++IHG+C+ +K+
Sbjct: 111 -----LPDIWAFNIYLHLLFVEGRIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKF 165

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGL 265
             A Q++ +MI KG  P       +  GL
Sbjct: 166 DTAIQFWRDMIHKGFSPDNKACGAIVVGL 194


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  143 bits (361), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 139/282 (49%), Gaps = 16/282 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI G CK +++D +   L   +  G++P+VVTY+ ++ G+CR      S R ++  
Sbjct: 333 IYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCR------SNRLDEAC 386

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R    +   ++ RG  PDV  +S ++    +A +   + D    M   G    V TYS++
Sbjct: 387 R----LLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTL 442

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  GR+++A  LL  MVR G  PS  TYN   K        + A++L  +M+    
Sbjct: 443 IDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSN- 501

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVK-----GSGLGPDLDSYTMLIHGLCEKQK 235
           C P+  +YNILI     + R+D    +    K       G   D  +Y+ LI GLC+  +
Sbjct: 502 CAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGR 561

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
             EA  YF EMI+ G++P  +T+  L  GL +S  L   R L
Sbjct: 562 VAEALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHL 603



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 129/267 (48%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G CK NR+  A   L  M  RG  P+V+TY +L++G+C+          E  + 
Sbjct: 194 YSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCK----------ESKVA 243

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V  EM   G  P++ +++ +LH   RA +   +L  +  M  +G  P V TY +++
Sbjct: 244 AAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLI 303

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR++DA  +L +M+  G  P    YN            + ++ L R+    G+ 
Sbjct: 304 DGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGI- 362

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ +I      NR+D    +   VK  G  PD+  Y+ LI GLC+  K  EA  
Sbjct: 363 KPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD 422

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            +  M   G     VT+ TL  GL ++
Sbjct: 423 LYEVMAGDGCDADVVTYSTLIDGLCKA 449



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 144/300 (48%), Gaps = 21/300 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G+C+   ID A+R   EM  + + PNV   ++L++G+C+           K   
Sbjct: 12  YAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCK----------AKRSI 61

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A + F  M+  GI  D   ++ +L    +  +   +L  L+ M++ G  P V TY+S++
Sbjct: 62  DALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLI 121

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
             LC     + A+EL   M      PS  TYN              AM L+++M +    
Sbjct: 122 DGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSH 181

Query: 178 --DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
             D  C PN+ +Y++LI      NR+    E+   +K  G  PD+ +YT+L+ GLC++ K
Sbjct: 182 DMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESK 241

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLK-KKLDEESITFGS 290
              A +   EM++ G +P  VT+ +L  GL +    SD L   R +  +      +T+G+
Sbjct: 242 VAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGT 301



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 134/276 (48%), Gaps = 18/276 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+L+ G  K  R+D A   L EM + G EPNVVTYN L++G+C+    +  +R     
Sbjct: 81  IYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKN---NEPDR----- 132

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLS-------LDKLNFMKEKGICPT 113
             A+++F+ M+     P + +++ +L    R  + + +       LD+ +   +    P 
Sbjct: 133 --AQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPN 190

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           V TYS ++  LC   R+  A ELL  M   G  P   TY               A ++ R
Sbjct: 191 VITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLR 250

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           +M + G CVPN+ +YN L+       R+     +  D+   G  P++ +Y  LI GLC+ 
Sbjct: 251 EMLDAG-CVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKV 309

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            + K+AC    +MI+KG  P  + +  L  GL ++D
Sbjct: 310 GRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKAD 345



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 87/201 (43%), Gaps = 8/201 (3%)

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
           +PDV +++ +L  + R  +   +    + M+ K + P V   S ++  LC   R  DA  
Sbjct: 6   QPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALR 65

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
               M  +G+      Y          K  + A+ +  +M++ G C PN+ +YN LI   
Sbjct: 66  CFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHG-CEPNVVTYNSLIDGL 124

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK------ 249
              N  D  +E++  +K     P + +Y  L+ GL    K + A   F EM+++      
Sbjct: 125 CKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMD 184

Query: 250 -GLLPQKVTFETLYRGLIQSD 269
               P  +T+  L  GL +++
Sbjct: 185 DRCSPNVITYSVLIDGLCKAN 205


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  143 bits (361), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 139/267 (52%), Gaps = 17/267 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ G CK+ ++D A   L  M+ERG +PN+VT+N +++G C+             + 
Sbjct: 375 YSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGK----------VD 424

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              KV + M+     PDV ++S ++  Y +A++ Q +   L      GI P  A+YSS++
Sbjct: 425 EGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL------GISPDKASYSSML 478

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LCS G++E+A+E++  M + G  P++  Y          +  + A+K+ + M E G C
Sbjct: 479 EGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERG-C 537

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+++Y+ILI       R++    + + +   G  PD+ +YT LI G C+  K   A Q
Sbjct: 538 EPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQ 597

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F  M + G  P K+ +  L  G  QS
Sbjct: 598 CFKTMRDSGCEPDKLAYNILISGFCQS 624



 Score =  136 bits (343), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 135/277 (48%), Gaps = 11/277 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI G CK+ +ID A   L  M+ER   P+V+TY  L+ G C+  +L          
Sbjct: 129 VYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALD--------- 179

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+ ++M+  G+ PD  +++ +L+   + +Q +     L  M E G  P   +Y++V
Sbjct: 180 -EARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTV 238

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V CLC  G+ E+A ++L +M+     P   TYN     +      + A +L   M     
Sbjct: 239 VACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMV-GRR 297

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P + +Y  LIG F   +R+     +  D+  +G+ PDL +Y  L+ GLC+  K +EA 
Sbjct: 298 CAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAH 357

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           +    M+EK   P  VT+  L  GL +   +   R L
Sbjct: 358 ELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLL 394



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 140/286 (48%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI G C+ N +D A + + +M E G+ P+ V YN LLNG+C++  L           
Sbjct: 165 YTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLE---------- 214

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K+ +EM   G EPD  S++ V+     + + + +   L  M EK   P V TY+S++
Sbjct: 215 EVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLM 274

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   ++++AE LL +MV     P+  TY      +        A ++   M + G+ 
Sbjct: 275 DGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGI- 333

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN L+       +++   E+   +      PD+ +Y++L++GLC+  K  +A  
Sbjct: 334 SPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARL 393

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
               M+E+G  P  VTF T+  G  ++  +    ++ + + E S T
Sbjct: 394 LLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCT 439



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 130/264 (49%), Gaps = 17/264 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+ G+CK++++D AER L +M+ R   P V+TY  L+ G  R   L           
Sbjct: 270 YNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLA---------- 319

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A +V ++M   GI PD+ +++ +L    +A + + + + L  M EK   P V TYS +V
Sbjct: 320 DAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILV 379

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+++DA  LL  M+  G  P+  T+N     +      +   K+   MKE   C
Sbjct: 380 NGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVS-C 438

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ LI  +   NRM     I       G+ PD  SY+ ++ GLC   K +EA +
Sbjct: 439 TPDVVTYSTLIDGYCKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEAQE 492

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
               M ++G  P    +  +  GL
Sbjct: 493 VMDLMTKQGCPPTSSHYALIIGGL 516



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 126/276 (45%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI+G C+  RID A + L EMI++   P+   YN L+ G+C+             I 
Sbjct: 95  YCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGK----------ID 144

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V   M  R   PDV +++ ++    + +    +   +  MKE G+ P    Y++++
Sbjct: 145 AARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALL 204

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   ++E+  +LL EMV  G  P   +YN              A K+  +M E   C
Sbjct: 205 NGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKK-C 263

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN L+  F  +++MD    +  D+ G    P + +YT LI G     +  +A +
Sbjct: 264 GPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYR 323

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
              +M + G+ P  VT+  L  GL ++  L     L
Sbjct: 324 VMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHEL 359



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 121/264 (45%), Gaps = 13/264 (4%)

Query: 21  FLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80
           F  E      +P+  TY  L+ G  R  +           +   ++ +EM  R   PDV 
Sbjct: 11  FFRERFSDPSKPSNSTYGALITGFSRAGN----------SKMVLEIANEMLARRFSPDVI 60

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           + + +L  Y +      +L   +F  +    PT  TY  ++  LC C RI++A +LL EM
Sbjct: 61  THNTILKAYCQIGDLDRALS--HFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEM 118

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
           ++    P A  YNC           + A  + + M E   CVP++ +Y  LI      N 
Sbjct: 119 IQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERS-CVPDVITYTSLIVGCCQTNA 177

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           +D  R++   +K SGL PD  +Y  L++GLC++ + +E  +   EM+E G  P   ++ T
Sbjct: 178 LDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNT 237

Query: 261 LYRGLIQSDMLRTWRRLKKKLDEE 284
           +   L +S       ++ +K+ E+
Sbjct: 238 VVACLCESGKYEEAGKILEKMIEK 261



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 123/277 (44%), Gaps = 15/277 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+ +     M      EM+ R   P+V+T+N +L   C+             I 
Sbjct: 27  YGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQ-------------IG 73

Query: 62  NAEKVFDEMRVRG-IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + ++     R +    P   ++ I++H   +  +   +   L+ M +K   P  A Y+ +
Sbjct: 74  DLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCL 133

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G+I+ A  +L  M+     P   TY             + A KL  +MKE GL
Sbjct: 134 IAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGL 193

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  +YN L+      N+++ V ++  ++  +G  PD  SY  ++  LCE  K++EA 
Sbjct: 194 -TPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAG 252

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           +   +MIEK   P  VT+ +L  G  +   +    RL
Sbjct: 253 KILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERL 289



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 3/176 (1%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P+ +TY +++      G  +   E+  EM+     P   T+N   K Y    D + A+  
Sbjct: 22  PSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSH 81

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
           +R       C P   +Y ILI       R+D   ++ +++      PD   Y  LI GLC
Sbjct: 82  FRGKM---WCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLC 138

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +  K   A      M+E+  +P  +T+ +L  G  Q++ L   R+L +K+ E  +T
Sbjct: 139 KMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLT 194


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  143 bits (361), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 147/285 (51%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+CKI +  +A   L +M + G  P++V YN +++G+C+          ++ + 
Sbjct: 192 YNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCK----------DRLVS 241

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F E++ +G+ PDV ++SI++H    + Q + +    N M    I P V T++ +V
Sbjct: 242 EALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILV 301

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G + +A+ ++  M+  GV P+  TYN     Y  +     A  ++  M   G C
Sbjct: 302 DKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKG-C 360

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+ SYNILI  +    R+D  RE+++++   GL P+  +Y  LI GLC+  +  EA +
Sbjct: 361 MPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARE 420

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F +M  +G  P  VT   L   L +   L    RL + + +  +
Sbjct: 421 LFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCL 465



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 147/318 (46%), Gaps = 46/318 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI  + ++ R+D A   LG++I+ G EP+ VT++ L+NG+C          FE    
Sbjct: 122 FNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLC----------FEDKFA 171

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL------------------------ 97
            A + FDEM   G +P++ +++ ++  + +  +  +                        
Sbjct: 172 RAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTII 231

Query: 98  -----------SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                      +LD  + +K KG+ P V TYS ++  LC+  + E+A  L  EM+   + 
Sbjct: 232 DGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIM 291

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P   T+N    +       + A  + + M E G+  PN  +YN L+  +   N++   R 
Sbjct: 292 PDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGV-EPNYATYNSLMNGYCLQNKVFEARM 350

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +++ +   G  P++ SY +LI+G C+ Q+  EA + F EM  +GL+P    + TL  GL 
Sbjct: 351 VFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLC 410

Query: 267 QSDMLRTWRRLKKKLDEE 284
           Q+      R L K +  +
Sbjct: 411 QAGRHCEARELFKDMQAQ 428



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 134/277 (48%), Gaps = 11/277 (3%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           C +  I+ A      MI +   P +V ++ LL+ + R        +   T+ +  K  + 
Sbjct: 60  CSLTNIEDALFSFNHMIHKHPLPCIVEFDKLLSALVRI-------KHYGTVLSLSKRIEL 112

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           +R   IE DV  F+I+++ +SR  +   +   L  + + G  P   T+SS++  LC   +
Sbjct: 113 LR---IERDVFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDK 169

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
              A E   EMV +G  P+  TYN   K +        A+ L ++M + G   P++  YN
Sbjct: 170 FARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAG-GRPDIVIYN 228

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            +I        +    +I++++KG G+ PD+ +Y++L+HGLC   + +EA   F EM+  
Sbjct: 229 TIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSL 288

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            ++P  VTF  L   L +  ML   + + K + E+ +
Sbjct: 289 NIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGV 325



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 10/129 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CK  RID A     EM  RG+ PN   YN L++G+C+ A  H   R      
Sbjct: 367 YNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQ-AGRHCEAR------ 419

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++F +M+ +G  PD+ + +I+L    +      +L     M++  + P + TY  ++
Sbjct: 420 ---ELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILI 476

Query: 122 KCLCSCGRI 130
           + +   G+I
Sbjct: 477 RAMYKSGKI 485


>gi|125564557|gb|EAZ09937.1| hypothetical protein OsI_32236 [Oryza sativa Indica Group]
          Length = 544

 Score =  143 bits (360), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 142/275 (51%), Gaps = 14/275 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+L++ WC+  R+D AER   EM + GV PNV TY  +++ + R             +
Sbjct: 252 LYTTLVHAWCRSGRLDEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQ----------V 301

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++  +M   G  P+  +F+ ++  + +A + +  L   N M++ G  P + TY+ +
Sbjct: 302 PRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFL 361

Query: 121 VKCLCSCGR--IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           ++  C  G+  ++ A ++L  M+  G  P   T+N   K      + N A KLY +M+E 
Sbjct: 362 METHCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQEL 421

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
             C PN+ +YN+L+ +F     MDMV  I  D+   G+ P++++Y  LI   C +  WK 
Sbjct: 422 Q-CKPNVVTYNLLMRLFNLEKSMDMVLRIKRDMDAQGVEPNVNTYAALIEAFCGRGNWKR 480

Query: 239 ACQYFVEMI-EKGLLPQKVTFETLYRGLIQSDMLR 272
           A     EM+ EK L P K  ++ +   L ++  LR
Sbjct: 481 AHMTLREMVEEKALKPTKPVYDMVLALLRKAGQLR 515



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 127/291 (43%), Gaps = 25/291 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--RASLHPSERFEK 58
           +Y ++I    K +   +A   L EM ER V    ++  ++L  + R  RA + PSE    
Sbjct: 147 LYAAMIDLLAKHHHFPLARHLLDEMRERSVP---ISAQLILALIRRYVRAEM-PSE---- 198

Query: 59  TIRNAEKVFDEMRVRGI-EPDVTSFSIVLHVYSR---AHQPQLSLDKLNFMKEKGICPTV 114
               A  +F  M   G   PD  + + +L   S+   A + Q   D    +      P V
Sbjct: 199 ----ASDLFRRMEEYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKSV----FTPDV 250

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
             Y+++V   C  GR+++AE +  EM + GV P+  TY               A +L  Q
Sbjct: 251 VLYTTLVHAWCRSGRLDEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQ 310

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK- 233
           M + G C PN  ++N ++   +   R + V ++ N ++  G  PD+ +Y  L+   C K 
Sbjct: 311 MIDSG-CPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKG 369

Query: 234 -QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
                 A +    MI KG +P   TF  + + ++    +   R+L +++ E
Sbjct: 370 QSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQE 420



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 5/154 (3%)

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
           A Y++++  L        A  LL EM    V  SA+      + Y   +  + A  L+R+
Sbjct: 146 ALYAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDLFRR 205

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M+E G   P+  +   L+G  ++  R+    +   D   S   PD+  YT L+H  C   
Sbjct: 206 MEEYGAGAPDPATLASLLGA-LSKKRLASEAQAMFDSYKSVFTPDVVLYTTLVHAWCRSG 264

Query: 235 KWKEACQYFVEMIEKGLLPQKVTF----ETLYRG 264
           +  EA + F EM + G+ P   T+    + +YR 
Sbjct: 265 RLDEAERVFAEMQQAGVTPNVYTYTAVIDAMYRA 298



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 11/134 (8%)

Query: 12  INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMR 71
           +  ++ A +    M E   +PNVVTYN+L+               EK++    ++  +M 
Sbjct: 405 LGNVNAARKLYERMQELQCKPNVVTYNLLMRLF----------NLEKSMDMVLRIKRDMD 454

Query: 72  VRGIEPDVTSFSIVLHVY-SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
            +G+EP+V +++ ++  +  R +  +  +     ++EK + PT   Y  V+  L   G++
Sbjct: 455 AQGVEPNVNTYAALIEAFCGRGNWKRAHMTLREMVEEKALKPTKPVYDMVLALLRKAGQL 514

Query: 131 EDAEELLGEMVRNG 144
              EEL+  MV  G
Sbjct: 515 RRHEELVEMMVDRG 528


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 138/263 (52%), Gaps = 10/263 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G  K +R+D A R L EM++ G  PNV +YN +L+G C+      + R E    
Sbjct: 47  YNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCK------ANRVE---- 96

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA  + ++M +RG  PDV S++ V++   +  Q   +   ++ M ++G  P V TY ++V
Sbjct: 97  NALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLV 156

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G ++ A EL+ +M   G  P+A TYN         +  + A++L+++M+E G C
Sbjct: 157 DGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSC 216

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ ++   +   ++D    +   +   G  P++ +Y+ L+HGLC+  K  EA  
Sbjct: 217 PPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATA 276

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
               M   G  P  VT+ T+  G
Sbjct: 277 LLQRMTRSGCSPNIVTYNTIIDG 299



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 144/293 (49%), Gaps = 27/293 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           YT++I G CK++++D A R + +MI+RG +PNV+TY  L++G CR   L  +        
Sbjct: 117 YTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMT 176

Query: 57  --------------------EKTIRNAEKVFDEMRVRG-IEPDVTSFSIVLHVYSRAHQP 95
                                + + +A ++F EM   G   PDV ++S ++    ++ + 
Sbjct: 177 ERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKV 236

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +   +  M  KG  P V TYSS++  LC  G++++A  LL  M R+G  P+  TYN  
Sbjct: 237 DDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTI 296

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +      + A  L  +M  DG C PN+ +Y +L+  F    + +    +   +   G
Sbjct: 297 IDGHCKLGRIDEAYHLLEEMV-DGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKG 355

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             P+L +Y  L+   C+K + + ACQ    MI+KG +P  V++ T+  GL ++
Sbjct: 356 YVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKA 408



 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 140/300 (46%), Gaps = 32/300 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH---------- 51
           Y +L+ G+C++  +D A   + +M ERG  PN +TYN +++G+C    L           
Sbjct: 152 YGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEME 211

Query: 52  -----PSERFEKT-----------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                P + F  +           + +A ++ + M  +G  P+V ++S +LH   +A + 
Sbjct: 212 ESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKL 271

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +   L  M   G  P + TY++++   C  GRI++A  LL EMV  G  P+  TY   
Sbjct: 272 DEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVL 331

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +     A  A+ L   M E G  VPN+ +YN L+ MF   + ++   ++ + +   G
Sbjct: 332 LDAFCKCGKAEDAIGLVEVMVEKGY-VPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKG 390

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
             P++ SY  +I GLC+  K  E      +M+    +P  VTF T+        M +T+R
Sbjct: 391 CVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDA-----MCKTYR 445



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 139/300 (46%), Gaps = 17/300 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+  +CK + ++ A + L  MI++G  PNVV+YN ++ G+C+   +H          
Sbjct: 363 YNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVH---------- 412

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + ++M      PD+ +F+ ++    + ++  ++ +  N ++E G  P + TY+S+V
Sbjct: 413 EGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLV 472

Query: 122 KCLCSCGRIEDAEELLGEMVR-NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             LC   R + AE LL EM R  G  P   TYN         K  + A KL+ QM  DGL
Sbjct: 473 HGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL 532

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  +Y+I+I        MD    +   +  +G  P   +Y  LI G C+     +A 
Sbjct: 533 -APDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKAL 591

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTW-----RRLKKKLDEESITFGSEFQNY 295
           +    ++ KG  P  VTF      L +   LR         L+  L  +++T+ +  + +
Sbjct: 592 EILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGF 651



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 147/282 (52%), Gaps = 13/282 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ S++ G C   +   A     EM  +   P+ VTYN ++NG      L  S+R +  I
Sbjct: 12  VHKSILRGLCDAGQCSDAVLHFREM-SKTCPPDSVTYNTMING------LSKSDRLDDAI 64

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R    + +EM   G  P+V S++ VLH + +A++ + +L  L  M  +G  P V +Y++V
Sbjct: 65  R----LLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTV 120

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   ++++A  ++ +M++ G  P+  TY      +    D +GA++L R+M E G 
Sbjct: 121 INGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGY 180

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG-LGPDLDSYTMLIHGLCEKQKWKEA 239
             PN  +YN ++    +  ++D   +++ +++ SG   PD+ +Y+ ++  L +  K  +A
Sbjct: 181 -RPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDA 239

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           C+    M+ KG  P  VT+ +L  GL ++  L     L +++
Sbjct: 240 CRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRM 281



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 133/295 (45%), Gaps = 25/295 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-------- 53
           Y ++I G CK+ RID A   L EM++ G +PNVVTY VLL+  C+      +        
Sbjct: 293 YNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMV 352

Query: 54  ---------------ERFEKT--IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                          + F K   +  A ++   M  +G  P+V S++ V+    +A +  
Sbjct: 353 EKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVH 412

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
             +  L  M      P + T+++++  +C   R++ A EL   +  +G  P+  TYN   
Sbjct: 413 EGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLV 472

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                 +  + A  L R+M     C P++ +YN +I       R+D   +++  +   GL
Sbjct: 473 HGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL 532

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
            PD  +Y+++I  LC+ +   EA      M++ G  P  +T+ TL  G  ++  L
Sbjct: 533 APDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNL 587



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 139/289 (48%), Gaps = 15/289 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + ++I   CK  R+D+A      + E G  PN+VTYN L++G+C+      S RF++   
Sbjct: 433 FNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCK------SRRFDQ--- 483

Query: 62  NAEKVFDEM-RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            AE +  EM R +G  PD+ +++ V+    ++ +   +      M   G+ P   TYS V
Sbjct: 484 -AEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIV 542

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC    +++A  +L  M++NG  P A TY      +    + + A+++ + +   G 
Sbjct: 543 ISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKG- 601

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +++I I       R+    E+   +  +GL PD  +Y  L+ G C+  + ++A 
Sbjct: 602 SYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAV 661

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
             F  M + G  P   T+ TL   L+     ++++ L  ++ +  +  G
Sbjct: 662 DLFEVMRQCGCEPDNATYTTLVGHLVDK---KSYKDLLAEVSKSMVDTG 707



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 115/254 (45%), Gaps = 13/254 (5%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M  +G++ +   +  +L G+C                +A   F EM  +   PD  +++ 
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQ----------CSDAVLHFREMS-KTCPPDSVTYNT 49

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           +++  S++ +   ++  L  M + G  P V +Y++V+   C   R+E+A  LL +MV  G
Sbjct: 50  MINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRG 109

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
             P   +Y             + A ++  +M + G C PN+ +Y  L+  F  +  +D  
Sbjct: 110 CPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRG-CQPNVITYGTLVDGFCRVGDLDGA 168

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV-TFETLYR 263
            E+   +   G  P+  +Y  ++HGLC  +K   A Q F EM E G  P  V T+ T+  
Sbjct: 169 VELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVD 228

Query: 264 GLIQSDMLRTWRRL 277
            L++S  +    RL
Sbjct: 229 SLVKSGKVDDACRL 242



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 2/179 (1%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M  KG+      + S+++ LC  G+  DA     EM +    P + TYN           
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT-CPPDSVTYNTMINGLSKSDR 59

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
            + A++L  +M ++G   PN+ SYN ++  F   NR++    +   +   G  PD+ SYT
Sbjct: 60  LDDAIRLLEEMVDNGF-APNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYT 118

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            +I+GLC+  +  EAC+   +MI++G  P  +T+ TL  G  +   L     L +K+ E
Sbjct: 119 TVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTE 177



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 2/190 (1%)

Query: 96  QLSLDKLNFMKEKGICP-TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
           Q S   L+F +    CP    TY++++  L    R++DA  LL EMV NG  P+  +YN 
Sbjct: 25  QCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNT 84

Query: 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
               +        A+ L  QM   G C P++ SY  +I     L+++D    + + +   
Sbjct: 85  VLHGFCKANRVENALWLLEQMVMRG-CPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQR 143

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTW 274
           G  P++ +Y  L+ G C       A +   +M E+G  P  +T+  +  GL     L + 
Sbjct: 144 GCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSA 203

Query: 275 RRLKKKLDEE 284
            +L K+++E 
Sbjct: 204 LQLFKEMEES 213


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 151/286 (52%), Gaps = 20/286 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++++++   CK  +I  A   +  MI RGVEPNVVTYN L++G C           +  +
Sbjct: 279 IFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHC----------LQSEM 328

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNF----MKEKGICPTVAT 116
             A KVFD M   G  P+V S++ +++ Y +  +    +DK  +    M +K + P   T
Sbjct: 329 DEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQR----MDKATYLFEEMCQKELIPNTVT 384

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y++++  LC  GR++DA  L  EMV +G  P   TY         +   + AM L + ++
Sbjct: 385 YNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIE 444

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
              +  P++  Y I+I        ++  R+I++++   GL P++ +YT++I+GLC +   
Sbjct: 445 GSNM-DPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLL 503

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQS-DMLRTWRRLKKKL 281
            EA + F+EM   G  P   T+ T+ +GL+Q+ + LR  + L++ L
Sbjct: 504 DEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEML 549



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 145/306 (47%), Gaps = 26/306 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           +T+LI G C   +I  A     +MI  G +PNVVTY  L+NG+C+  + + + R      
Sbjct: 140 FTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSME 199

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               ++ +  A  +F +M  +GI PD+ +++ ++H      + +
Sbjct: 200 QGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWK 259

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
                LN M    I P V  +S+VV  LC  G+I +A +++  M+  GV P+  TYN   
Sbjct: 260 HVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALM 319

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +  + + + A+K++  M  +G   PN+ SYN LI  +  + RMD    ++ ++    L
Sbjct: 320 DGHCLQSEMDEAVKVFDTMVHNGY-APNVISYNTLINGYCKIQRMDKATYLFEEMCQKEL 378

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  +Y  L+HGLC   + ++A   F EM+  G +P   T+  L   L +   L     
Sbjct: 379 IPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMA 438

Query: 277 LKKKLD 282
           L K ++
Sbjct: 439 LLKTIE 444



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 132/281 (46%), Gaps = 11/281 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI+  C +         L +MI   + P+VV ++ +++ +C+          E  I 
Sbjct: 245 YTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCK----------EGKIT 294

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V D M +RG+EP+V +++ ++  +    +   ++   + M   G  P V +Y++++
Sbjct: 295 EAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLI 354

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R++ A  L  EM +  + P+  TYN              A+ L+ +M   G  
Sbjct: 355 NGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQ- 413

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y IL+      + +D    +   ++GS + PD+  YT++I G+C   + + A  
Sbjct: 414 IPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARD 473

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
            F  +  KGL P   T+  +  GL +  +L    +L  ++D
Sbjct: 474 IFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMD 514



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 117/253 (46%), Gaps = 11/253 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N +D A      M+     P+ V +N LL  + +           K       + ++M  
Sbjct: 46  NTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAK----------TKQYPTVFSLSNQMDS 95

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
            GI PDV + +I+++ +   ++P  +   L  + + G+ P  AT++++++ LC  G+I D
Sbjct: 96  FGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGD 155

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A  L  +M+  G  P+  TY           + N A++L R M E G C P++  Y  +I
Sbjct: 156 ALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSM-EQGNCQPDVVVYTSII 214

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                  ++     +++ + G G+ PD+ +YT LIH LC   +WK       +MI   ++
Sbjct: 215 DSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIM 274

Query: 253 PQKVTFETLYRGL 265
           P  V F T+   L
Sbjct: 275 PDVVIFSTVVDAL 287



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 128/295 (43%), Gaps = 44/295 (14%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C +NR   A   L ++++ G++P+  T+  L+ G+C           E  I +A 
Sbjct: 108 LINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLC----------VEGKIGDAL 157

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +FD+M   G +P+V ++  +++   +      ++  L  M++    P V  Y+S++  L
Sbjct: 158 HLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSL 217

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE------- 177
           C   ++ +A  L  +MV  G+ P   TY           +      L  QM         
Sbjct: 218 CKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDV 277

Query: 178 -------DGLCV--------------------PNMHSYNILIGMFMALNRMDMVREIWND 210
                  D LC                     PN+ +YN L+      + MD   ++++ 
Sbjct: 278 VIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDT 337

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +  +G  P++ SY  LI+G C+ Q+  +A   F EM +K L+P  VT+ TL  GL
Sbjct: 338 MVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGL 392



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 118/251 (47%), Gaps = 19/251 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CKI R+D A     EM ++ + PN VTYN L++G+C    L          +
Sbjct: 350 YNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRL----------Q 399

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +F EM   G  PD+ ++ I+L    +      ++  L  ++   + P +  Y+ V+
Sbjct: 400 DAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVI 459

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G +E A ++   +   G+ P+  TY         R   + A KL+ +M  +G C
Sbjct: 460 DGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNG-C 518

Query: 182 VPNMHSYNILIGMFM----ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            P+  +YN +    +    AL  + +++E+       G   D+ + T+L+  LC+ +  +
Sbjct: 519 SPDGCTYNTITQGLLQNKEALRAIQLLQEML----ARGFSADVSTTTLLVEMLCDDKLDQ 574

Query: 238 EACQYFVEMIE 248
              Q   E ++
Sbjct: 575 SVKQILSEFVQ 585



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 1/154 (0%)

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           ++DA      M+     PS   +N         K       L  QM   G+  P++++ N
Sbjct: 48  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGI-PPDVYTLN 106

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
           ILI  F  LNR      +   +   GL PD  ++T LI GLC + K  +A   F +MI +
Sbjct: 107 ILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGE 166

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           G  P  VT+ TL  GL +        RL + +++
Sbjct: 167 GFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQ 200



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT +I G C+   ++ A      +  +G+ PNV TY +++NG+CRR  L          
Sbjct: 454 IYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLD--------- 504

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+F EM   G  PD  +++ +     +  +   ++  L  M  +G    V+T + +
Sbjct: 505 -EANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLL 563

Query: 121 VKCLCSCGRIEDAEELLGEMVR 142
           V+ LC     +  +++L E V+
Sbjct: 564 VEMLCDDKLDQSVKQILSEFVQ 585


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 147/283 (51%), Gaps = 11/283 (3%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           SL+ G  K+  +D+A     E++  GV+ NV T N+++N +C+           + I N 
Sbjct: 67  SLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKN----------QKIENT 116

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
           +    +M  +G+ PDV +++ +++ Y R    + + + ++ M  KG+ P V TY++++  
Sbjct: 117 KSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIING 176

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC  G+   A+ +L EM++ G+ P   TYN    E     +   A +++ +M   G+ VP
Sbjct: 177 LCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGV-VP 235

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++ S++ LIG+      +D   + + D+K +GL PD   YT+LI G C      EA +  
Sbjct: 236 DLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVR 295

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            EM+E+G +   VT+ T+  GL +  ML     L  ++ E  +
Sbjct: 296 DEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGV 338



 Score =  126 bits (317), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 137/298 (45%), Gaps = 46/298 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK  +   A+  L EM++ G+ P+  TYN+LL   CR  ++           
Sbjct: 170 YNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMM---------- 219

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP--------- 112
           +AE++FDEM  +G+ PD+ SFS ++ + S+      +L     MK  G+ P         
Sbjct: 220 DAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILI 279

Query: 113 --------------------------TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                                      V TY++++  LC    + +A+EL  EM   GV 
Sbjct: 280 GGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVF 339

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P   T+      Y    + N A+ L+  M +  L  P++ +YN LI  F   + M+ V E
Sbjct: 340 PDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNL-KPDVVTYNTLIDGFCKGSEMEKVNE 398

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           +WND+    + P+  SY +LI+G C      EA + + EM+EKG     +T  T+ +G
Sbjct: 399 LWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKG 456



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 149/315 (47%), Gaps = 44/315 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G+C+   +  A +   EM+E+G   +VVTYN +LNG+C+          EK +
Sbjct: 274 IYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCK----------EKML 323

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++F EM  RG+ PD  +F+ +++ YS+      ++     M ++ + P V TY+++
Sbjct: 324 SEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTL 383

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C    +E   EL  +M+   + P+  +Y      Y      + A +L+ +M E G 
Sbjct: 384 IDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGF 443

Query: 181 ----------------------------------CVPNMHSYNILIGMFMALNRMDMVRE 206
                                              VP+  +YN LI  F+    MD    
Sbjct: 444 EATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFA 503

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           + N ++ SGL PD+ +Y ++++G   + + +EA    ++MIE+G+ P + T+ +L  G +
Sbjct: 504 LVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHV 563

Query: 267 QSDMLRTWRRLKKKL 281
             + L+   R+  ++
Sbjct: 564 TQNNLKEAFRVHDEM 578



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 127/253 (50%), Gaps = 11/253 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G+ K   ++ A      MI+R ++P+VVTYN L++G C+ + +           
Sbjct: 345 FTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEK--------- 395

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +++++M  R I P+  S+ I+++ Y        +    + M EKG   T+ T +++V
Sbjct: 396 -VNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIV 454

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C  G    A+E L  M+  G+ P   TYN     +   ++ + A  L  +M+  GL 
Sbjct: 455 KGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGL- 513

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +YN+++  F    RM     I   +   G+ PD  +YT LI+G   +   KEA +
Sbjct: 514 LPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFR 573

Query: 242 YFVEMIEKGLLPQ 254
              EM+++G +P 
Sbjct: 574 VHDEMLQRGFVPD 586



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 97/206 (47%), Gaps = 1/206 (0%)

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           F +++  Y +A + +   +    +K KG+C ++   +S++  L   G ++ A E+  E+V
Sbjct: 30  FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 89

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
           R+GV  +  T N         +           M+E G+  P++ +YN LI  +     +
Sbjct: 90  RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGV-FPDVVTYNTLINAYCRQGLL 148

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   E+ + + G GL P + +Y  +I+GLC+  K+  A     EM++ G+ P   T+  L
Sbjct: 149 EEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNIL 208

Query: 262 YRGLIQSDMLRTWRRLKKKLDEESIT 287
                ++D +    R+  ++  + + 
Sbjct: 209 LVECCRNDNMMDAERIFDEMPSQGVV 234



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 89/204 (43%), Gaps = 1/204 (0%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           + +R   + F  ++ +G+   + + + +L    +     L+ +    +   G+   V T 
Sbjct: 41  RKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTL 100

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + ++  LC   +IE+ +  L +M   GV P   TYN     Y  +     A +L   M  
Sbjct: 101 NIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSG 160

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            GL  P + +YN +I       +    + + +++   G+ PD  +Y +L+   C      
Sbjct: 161 KGL-KPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMM 219

Query: 238 EACQYFVEMIEKGLLPQKVTFETL 261
           +A + F EM  +G++P  V+F  L
Sbjct: 220 DAERIFDEMPSQGVVPDLVSFSAL 243



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 5/144 (3%)

Query: 129 RIEDAEELLGEMVRNGVCPSAE-TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
           R+E  E L+   +  G C S    ++   + Y   +      + +R +K  GLCV ++++
Sbjct: 9   RVEIVESLV---LTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCV-SINA 64

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
            N L+G  + +  +D+  EI+ +V  SG+  ++ +  ++I+ LC+ QK +    +  +M 
Sbjct: 65  CNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDME 124

Query: 248 EKGLLPQKVTFETLYRGLIQSDML 271
           EKG+ P  VT+ TL     +  +L
Sbjct: 125 EKGVFPDVVTYNTLINAYCRQGLL 148


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 147/283 (51%), Gaps = 11/283 (3%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           SL+ G  K+  +D+A     E++  GV+ NV T N+++N +C+           + I N 
Sbjct: 224 SLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCK----------NQKIENT 273

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
           +    +M  +G+ PDV +++ +++ Y R    + + + ++ M  KG+ P V TY++++  
Sbjct: 274 KSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIING 333

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC  G+   A+ +L EM++ G+ P   TYN    E     +   A +++ +M   G+ VP
Sbjct: 334 LCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGV-VP 392

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++ S++ LIG+      +D   + + D+K +GL PD   YT+LI G C      EA +  
Sbjct: 393 DLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVR 452

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            EM+E+G +   VT+ T+  GL +  ML     L  ++ E  +
Sbjct: 453 DEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGV 495



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 137/298 (45%), Gaps = 46/298 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK  +   A+  L EM++ G+ P+  TYN+LL   CR  ++           
Sbjct: 327 YNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMM---------- 376

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP--------- 112
           +AE++FDEM  +G+ PD+ SFS ++ + S+      +L     MK  G+ P         
Sbjct: 377 DAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILI 436

Query: 113 --------------------------TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                                      V TY++++  LC    + +A+EL  EM   GV 
Sbjct: 437 GGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVF 496

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P   T+      Y    + N A+ L+  M +  L  P++ +YN LI  F   + M+ V E
Sbjct: 497 PDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNL-KPDVVTYNTLIDGFCKGSEMEKVNE 555

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           +WND+    + P+  SY +LI+G C      EA + + EM+EKG     +T  T+ +G
Sbjct: 556 LWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKG 613



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 149/315 (47%), Gaps = 44/315 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G+C+   +  A +   EM+E+G   +VVTYN +LNG+C+          EK +
Sbjct: 431 IYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCK----------EKML 480

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++F EM  RG+ PD  +F+ +++ YS+      ++     M ++ + P V TY+++
Sbjct: 481 SEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTL 540

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C    +E   EL  +M+   + P+  +Y      Y      + A +L+ +M E G 
Sbjct: 541 IDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGF 600

Query: 181 ----------------------------------CVPNMHSYNILIGMFMALNRMDMVRE 206
                                              VP+  +YN LI  F+    MD    
Sbjct: 601 EATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFA 660

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           + N ++ SGL PD+ +Y ++++G   + + +EA    ++MIE+G+ P + T+ +L  G +
Sbjct: 661 LVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHV 720

Query: 267 QSDMLRTWRRLKKKL 281
             + L+   R+  ++
Sbjct: 721 TQNNLKEAFRVHDEM 735



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 127/252 (50%), Gaps = 11/252 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G+ K   ++ A      MI+R ++P+VVTYN L++G C+ + +           
Sbjct: 502 FTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEK--------- 552

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +++++M  R I P+  S+ I+++ Y        +    + M EKG   T+ T +++V
Sbjct: 553 -VNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIV 611

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C  G    A+E L  M+  G+ P   TYN     +   ++ + A  L  +M+  GL 
Sbjct: 612 KGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGL- 670

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +YN+++  F    RM     I   +   G+ PD  +YT LI+G   +   KEA +
Sbjct: 671 LPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFR 730

Query: 242 YFVEMIEKGLLP 253
              EM+++G +P
Sbjct: 731 VHDEMLQRGFVP 742



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 97/205 (47%), Gaps = 1/205 (0%)

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           F +++  Y +A + +   +    +K KG+C ++   +S++  L   G ++ A E+  E+V
Sbjct: 187 FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 246

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
           R+GV  +  T N         +           M+E G+  P++ +YN LI  +     +
Sbjct: 247 RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGV-FPDVVTYNTLINAYCRQGLL 305

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   E+ + + G GL P + +Y  +I+GLC+  K+  A     EM++ G+ P   T+  L
Sbjct: 306 EEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNIL 365

Query: 262 YRGLIQSDMLRTWRRLKKKLDEESI 286
                ++D +    R+  ++  + +
Sbjct: 366 LVECCRNDNMMDAERIFDEMPSQGV 390



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 88/182 (48%), Gaps = 22/182 (12%)

Query: 111 CP----TVATYSSVVKCLCSCGRIEDAEELLGEMVRN----------------GVCPSAE 150
           CP    ++ ++S+++  L    R+ DA+ ++  MVR                 G C S  
Sbjct: 125 CPNFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNP 184

Query: 151 -TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
             ++   + Y   +      + +R +K  GLCV ++++ N L+G  + +  +D+  EI+ 
Sbjct: 185 LVFDLLVRTYVQARKLREGCEAFRVLKSKGLCV-SINACNSLLGGLVKVGWVDLAWEIYQ 243

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           +V  SG+  ++ +  ++I+ LC+ QK +    +  +M EKG+ P  VT+ TL     +  
Sbjct: 244 EVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQG 303

Query: 270 ML 271
           +L
Sbjct: 304 LL 305



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 25/102 (24%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y +LI G+ K   +D A   + +M   G+ P+V+TYNV+LNG  R+  +  +E       
Sbjct: 642 YNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMI 701

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPD 78
                               +  ++ A +V DEM  RG  PD
Sbjct: 702 ERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 743


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 142/288 (49%), Gaps = 11/288 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI   C   R+  A   L +M+ RG +PNVVTY VLL  +C+ +       FE+   
Sbjct: 145 YTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSG------FEQ--- 195

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V DEMR +G  P++ +++++++   R  +   + D LN +   G  P   +Y++++
Sbjct: 196 -AMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLL 254

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC+  R +D EEL  EM+     P+  T++   + +        A+++ +QM E   C
Sbjct: 255 KGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHE-C 313

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N    NI+I       R+D   +  N++   G  PD  SYT ++ GLC  ++W +A +
Sbjct: 314 ATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKE 373

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
              EM+     P +VTF T    L Q  ++     L +++ E   T G
Sbjct: 374 LLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVG 421



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 123/260 (47%), Gaps = 15/260 (5%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G  P+V     L+  +CRR     + R    +R AE         G   DV +++ ++  
Sbjct: 70  GEAPDVYLCTKLIRNLCRRGRTSDAAR---VLRAAEG-------SGSPVDVFAYNTLVAG 119

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           Y R      +   +  M    + P   TY+ +++ LC  GR+ DA  LL +M+R G  P+
Sbjct: 120 YCRYGHLDAARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPN 176

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             TY    +          AM +  +M+  G C PN+ +YN++I       R+D  R++ 
Sbjct: 177 VVTYTVLLEAMCKNSGFEQAMAVLDEMRAKG-CTPNIVTYNVIINGMCREGRVDDARDLL 235

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           N +   G  PD  SYT L+ GLC  ++W +  + F EM+EK  +P +VTF+ L R   + 
Sbjct: 236 NRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRG 295

Query: 269 DML-RTWRRLKKKLDEESIT 287
            M+ R  + L++  + E  T
Sbjct: 296 GMVERAIQVLQQMTEHECAT 315



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 136/319 (42%), Gaps = 34/319 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           YT+L+ G C   R D  E    EM+E+   PN VT+++L+   CR   +  + +      
Sbjct: 250 YTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMT 309

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +  + +A K  + M   G  PD  S++ VL    RA +  
Sbjct: 310 EHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWN 369

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + + L  M      P   T+++ +  LC  G IE A  L+ +M  +G      TYN   
Sbjct: 370 DAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALV 429

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +  +   + A++L+R M     C PN  +Y  L+       R+D   E+  ++     
Sbjct: 430 NGFCVQGHIDSALELFRSMP----CKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDC 485

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLR 272
            P++ ++ +L++  C+K    EA +   +M+E G  P  +T+ TL+ G+ +     D L 
Sbjct: 486 PPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALE 545

Query: 273 TWRRL-KKKLDEESITFGS 290
               L  K +  + ITF S
Sbjct: 546 LLHGLVSKGVSPDVITFSS 564



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 132/280 (47%), Gaps = 14/280 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + + I   C+   I+ A   + +M E G    VVTYN L+NG C           +  I 
Sbjct: 390 FNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFC----------VQGHID 439

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F  M  +   P+  +++ +L     A +   + + +  M  +   P V T++ +V
Sbjct: 440 SALELFRSMPCK---PNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLV 496

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +++A EL+ +M+ +G  P+  TYN  F        +  A++L   +   G+ 
Sbjct: 497 NFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGV- 555

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +++ +IG+    +R++   ++++  +  G+ P    Y  ++ GLC++ +   A  
Sbjct: 556 SPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAID 615

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +   M+  G +P + T+  L  GL +  +L+  + L   L
Sbjct: 616 FLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQDLLSML 655



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 121/265 (45%), Gaps = 14/265 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +I   CK  R+D A +FL  M   G  P+ ++Y  +L G+CR      +ER+     +A+
Sbjct: 323 VINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCR------AERWN----DAK 372

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           ++  EM      P+  +F+  + +  +    + ++  +  M+E G    V TY+++V   
Sbjct: 373 ELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGF 432

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G I+ A EL   M      P+  TY          +  + A +L  +M     C PN
Sbjct: 433 CVQGHIDSALELFRSMPCK---PNTITYTTLLTGLCNAERLDAAAELVAEMLHRD-CPPN 488

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + ++N+L+  F     +D   E+   +   G  P+L +Y  L  G+ +    ++A +   
Sbjct: 489 VVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLH 548

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSD 269
            ++ KG+ P  +TF ++   L + D
Sbjct: 549 GLVSKGVSPDVITFSSIIGILSKED 573



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSE 54
           +Y  ++ G CK + ID A  FL  M+  G  PN  TY +L+ G+ R   L  ++
Sbjct: 596 VYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQ 649


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 154/283 (54%), Gaps = 14/283 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++++++   CK  ++  A   +  MI+RGVEPNVVTYN L++G C R+ +          
Sbjct: 271 IFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEM---------- 320

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A KVFD M  +G  PDV S+S +++ Y +  + + ++     M  K + P   TYS++
Sbjct: 321 DEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTL 380

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR-KDANGAMKLYRQMKEDG 179
           +  LC  GR++DA  L  EMV  G  P   +Y C   +Y  + +  + A+ L + ++   
Sbjct: 381 MHGLCHVGRLQDAIALFHEMVTRGQIPDFVSY-CILLDYLCKNRRLDEAIALLKAIEGSN 439

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  P++  Y I+I        ++  R++++++   GL P++ +YT++I+GLC++    EA
Sbjct: 440 M-DPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEA 498

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSD-MLRTWRRLKKKL 281
            + F EM  KG  P   T+  + RG ++++  LR  + L++ L
Sbjct: 499 SKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEML 541



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 144/305 (47%), Gaps = 32/305 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           + +LI G C   +I        +MI  G +PNVVTY  L+NG+C+  S   + R      
Sbjct: 132 FNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSME 191

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               ++ +  A  +F EM  +GI P + +++ ++H      + +
Sbjct: 192 QGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWK 251

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
                LN M    I P V  +S+VV  LC  G++ +A +++  M++ GV P+  TYN   
Sbjct: 252 HVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALM 311

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +  R + + A+K++  M   G   P++ SY+ LI  +  + R++    ++ ++    L
Sbjct: 312 DGHCLRSEMDEAVKVFDTMVCKGF-APDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKEL 370

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  +Y+ L+HGLC   + ++A   F EM+ +G +P  V++  L       D L   RR
Sbjct: 371 IPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILL------DYLCKNRR 424

Query: 277 LKKKL 281
           L + +
Sbjct: 425 LDEAI 429



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 136/302 (45%), Gaps = 26/302 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR-------------- 46
           +YTS+I   CK  ++  A     EMI +G+ P++ TYN L++ +C               
Sbjct: 201 VYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEM 260

Query: 47  -RASLHPSERFEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
             + + P+     T+ +          A  V D M  RG+EP+V +++ ++  +    + 
Sbjct: 261 VNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEM 320

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             ++   + M  KG  P V +YS+++   C   RIE A  L  EM R  + P+  TY+  
Sbjct: 321 DEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTL 380

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                       A+ L+ +M   G  +P+  SY IL+       R+D    +   ++GS 
Sbjct: 381 MHGLCHVGRLQDAIALFHEMVTRGQ-IPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSN 439

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           + PD+  YT++I G+C   + + A   F  +  KGL P   T+  +  GL Q  +L    
Sbjct: 440 MDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEAS 499

Query: 276 RL 277
           +L
Sbjct: 500 KL 501



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 128/295 (43%), Gaps = 44/295 (14%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C + R+  A   L ++++ G +PN+ T+N L+ G+C           E  I    
Sbjct: 100 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLC----------VEGKIGEVL 149

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +FD+M   G +P+V ++  +++   +      ++  L  M++    P V  Y+S++  L
Sbjct: 150 HLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSL 209

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE------- 177
           C   ++  A  L  EM+  G+ PS  TYN          +      L  +M         
Sbjct: 210 CKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNV 269

Query: 178 -------DGLCV--------------------PNMHSYNILIGMFMALNRMDMVREIWND 210
                  D LC                     PN+ +YN L+      + MD   ++++ 
Sbjct: 270 VIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDT 329

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +   G  PD+ SY+ LI+G C+ Q+ ++A   F EM  K L+P  VT+ TL  GL
Sbjct: 330 MVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGL 384



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 114/247 (46%), Gaps = 11/247 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI G+CKI RI+ A     EM  + + PN VTY+ L++G+C    L          +
Sbjct: 342 YSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRL----------Q 391

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +F EM  RG  PD  S+ I+L    +  +   ++  L  ++   + P +  Y+ V+
Sbjct: 392 DAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVI 451

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G +E A +L   +   G+ P+  TY         +     A KL+ +MK  G  
Sbjct: 452 DGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYS 511

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +YN++   F+  N      ++  ++   G   D+ + T+L+  L +    +   Q
Sbjct: 512 -PNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQSVKQ 570

Query: 242 YFVEMIE 248
              E ++
Sbjct: 571 ILSEFLQ 577



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 109/253 (43%), Gaps = 11/253 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N +D A      M+     P++  +  LL  + +           K       +  +M  
Sbjct: 38  NTLDDALSSFNRMLHMHPPPSIADFTKLLISITKM----------KHYSTVLSLSHQMDS 87

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
            GI P++ + +I+++ +    +   +   L  + + G  P +AT++++++ LC  G+I +
Sbjct: 88  FGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGE 147

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
              L  +M+  G  P+  TY             + A++L R M E G C P++  Y  +I
Sbjct: 148 VLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSM-EQGNCQPDVVVYTSII 206

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                  ++     +++++   G+ P + +Y  LIH LC   +WK       EM+   ++
Sbjct: 207 DSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIM 266

Query: 253 PQKVTFETLYRGL 265
           P  V F T+   L
Sbjct: 267 PNVVIFSTVVDAL 279



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 1/154 (0%)

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           ++DA      M+     PS   +          K  +  + L  QM   G+  PN+++ N
Sbjct: 40  LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGI-PPNIYTLN 98

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
           ILI  F  L R+     +   +   G  P++ ++  LI GLC + K  E    F +MI +
Sbjct: 99  ILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGE 158

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           G  P  VT+ TL  GL +        RL + +++
Sbjct: 159 GFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQ 192



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 72/142 (50%), Gaps = 10/142 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT +I G C+   ++ A      +  +G+ PNV TY +++NG+C++  L          
Sbjct: 446 IYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLL---------- 495

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+F EM+ +G  P+  +++++   + R ++    +  L  M  +G    V+T + +
Sbjct: 496 AEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVL 555

Query: 121 VKCLCSCGRIEDAEELLGEMVR 142
           V+ L   G  +  +++L E ++
Sbjct: 556 VEMLSDDGLDQSVKQILSEFLQ 577


>gi|356570295|ref|XP_003553325.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Glycine max]
          Length = 516

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 150/261 (57%), Gaps = 15/261 (5%)

Query: 2   YTSLIYGWCK-INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +  ++ GWC  I     AER   EM +R ++ +VV+Y  +++   + + L+      K +
Sbjct: 206 FNIILNGWCNLIVSTSHAERIWHEMSKRRIQHDVVSYGSIISCYSKSSKLY------KVL 259

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R    +FDEM+ R I PD   ++ V++  ++    + +++ +  +++  + P V TY+S+
Sbjct: 260 R----MFDEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNLIGTLEDNDVTPNVVTYNSL 315

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +K LC  G++++A++L  E+++  + P+ +T++ FF+  R +++     +L  +MKE G 
Sbjct: 316 IKPLCKAGKVDEAKQLFYEILKRHLSPTIQTFHAFFRILRTKEE---VFELLDKMKELG- 371

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P + +Y +L+  F    ++D V ++W+ ++  G+G D  SY +LIHGL    K +EA 
Sbjct: 372 CYPTIETYIMLMRKFCRWRQLDDVFKMWDAMREDGIGHDRSSYIVLIHGLFLNGKLEEAH 431

Query: 241 QYFVEMIEKGLLPQKVTFETL 261
            Y+ EM EKG LP+  T E L
Sbjct: 432 TYYAEMQEKGFLPEPKTEEML 452



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 22/189 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR-------------- 46
           +Y ++IY   K   +  A   +G + +  V PNVVTYN L+  +C+              
Sbjct: 276 VYNAVIYALAKGRLVKEAVNLIGTLEDNDVTPNVVTYNSLIKPLCKAGKVDEAKQLFYEI 335

Query: 47  -RASLHPS----ERFEKTIRNAEKVF---DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLS 98
            +  L P+      F + +R  E+VF   D+M+  G  P + ++ +++  + R  Q    
Sbjct: 336 LKRHLSPTIQTFHAFFRILRTKEEVFELLDKMKELGCYPTIETYIMLMRKFCRWRQLDDV 395

Query: 99  LDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158
               + M+E GI    ++Y  ++  L   G++E+A     EM   G  P  +T       
Sbjct: 396 FKMWDAMREDGIGHDRSSYIVLIHGLFLNGKLEEAHTYYAEMQEKGFLPEPKTEEMLQAW 455

Query: 159 YRGRKDANG 167
             G++   G
Sbjct: 456 VSGKQATEG 464



 Score = 39.3 bits (90), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 39/212 (18%), Positives = 92/212 (43%), Gaps = 8/212 (3%)

Query: 62  NAEKVFDEMRVRGIEPDVTS---FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A  + +EMR     P + +     I++  Y   H    +++     K+      +  + 
Sbjct: 114 TAWNLIEEMRRGRTGPSLVTPQTLLIMIRKYCAVHDVARAINTFYAYKQFNFQVGLEEFH 173

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCP-SAETYNCFFKEYRGR-KDANGAMKLYRQMK 176
           S++  LC    ++DAE LL       + P   +++N     +       + A +++ +M 
Sbjct: 174 SLLSALCRYKNVQDAEHLL--FCNKNLFPLDTKSFNIILNGWCNLIVSTSHAERIWHEMS 231

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           +  +   ++ SY  +I  +   +++  V  +++++K   + PD   Y  +I+ L + +  
Sbjct: 232 KRRI-QHDVVSYGSIISCYSKSSKLYKVLRMFDEMKKRKITPDRKVYNAVIYALAKGRLV 290

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           KEA      + +  + P  VT+ +L + L ++
Sbjct: 291 KEAVNLIGTLEDNDVTPNVVTYNSLIKPLCKA 322


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 154/283 (54%), Gaps = 14/283 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++++++   CK  ++  A   +  MI+RGVEPNVVTYN L++G C R+ +          
Sbjct: 280 IFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEM---------- 329

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A KVFD M  +G  PDV S+S +++ Y +  + + ++     M  K + P   TYS++
Sbjct: 330 DEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTL 389

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR-KDANGAMKLYRQMKEDG 179
           +  LC  GR++DA  L  EMV  G  P   +Y C   +Y  + +  + A+ L + ++   
Sbjct: 390 MHGLCHVGRLQDAIALFHEMVTRGQIPDFVSY-CILLDYLCKNRRLDEAIALLKAIEGSN 448

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  P++  Y I+I        ++  R++++++   GL P++ +YT++I+GLC++    EA
Sbjct: 449 M-DPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEA 507

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSD-MLRTWRRLKKKL 281
            + F EM  KG  P   T+  + RG ++++  LR  + L++ L
Sbjct: 508 SKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEML 550



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 136/282 (48%), Gaps = 26/282 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           + +LI G C   +I        +MI  G +PNVVTY  L+NG+C+  S   + R      
Sbjct: 141 FNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSME 200

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               ++ +  A  +F EM  +GI P + +++ ++H      + +
Sbjct: 201 QGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWK 260

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
                LN M    I P V  +S+VV  LC  G++ +A +++  M++ GV P+  TYN   
Sbjct: 261 HVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALM 320

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +  R + + A+K++  M   G   P++ SY+ LI  +  + R++    ++ ++    L
Sbjct: 321 DGHCLRSEMDEAVKVFDTMVCKGF-APDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKEL 379

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
            P+  +Y+ L+HGLC   + ++A   F EM+ +G +P  V++
Sbjct: 380 IPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSY 421



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 136/302 (45%), Gaps = 26/302 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR-------------- 46
           +YTS+I   CK  ++  A     EMI +G+ P++ TYN L++ +C               
Sbjct: 210 VYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEM 269

Query: 47  -RASLHPSERFEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
             + + P+     T+ +          A  V D M  RG+EP+V +++ ++  +    + 
Sbjct: 270 VNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEM 329

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             ++   + M  KG  P V +YS+++   C   RIE A  L  EM R  + P+  TY+  
Sbjct: 330 DEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTL 389

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                       A+ L+ +M   G  +P+  SY IL+       R+D    +   ++GS 
Sbjct: 390 MHGLCHVGRLQDAIALFHEMVTRGQ-IPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSN 448

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           + PD+  YT++I G+C   + + A   F  +  KGL P   T+  +  GL Q  +L    
Sbjct: 449 MDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEAS 508

Query: 276 RL 277
           +L
Sbjct: 509 KL 510



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 128/295 (43%), Gaps = 44/295 (14%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C + R+  A   L ++++ G +PN+ T+N L+ G+C           E  I    
Sbjct: 109 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLC----------VEGKIGEVL 158

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +FD+M   G +P+V ++  +++   +      ++  L  M++    P V  Y+S++  L
Sbjct: 159 HLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSL 218

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE------- 177
           C   ++  A  L  EM+  G+ PS  TYN          +      L  +M         
Sbjct: 219 CKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNV 278

Query: 178 -------DGLCV--------------------PNMHSYNILIGMFMALNRMDMVREIWND 210
                  D LC                     PN+ +YN L+      + MD   ++++ 
Sbjct: 279 VIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDT 338

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +   G  PD+ SY+ LI+G C+ Q+ ++A   F EM  K L+P  VT+ TL  GL
Sbjct: 339 MVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGL 393



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 114/247 (46%), Gaps = 11/247 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI G+CKI RI+ A     EM  + + PN VTY+ L++G+C    L          +
Sbjct: 351 YSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRL----------Q 400

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +F EM  RG  PD  S+ I+L    +  +   ++  L  ++   + P +  Y+ V+
Sbjct: 401 DAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVI 460

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G +E A +L   +   G+ P+  TY         +     A KL+ +MK  G  
Sbjct: 461 DGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYS 520

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +YN++   F+  N      ++  ++   G   D+ + T+L+  L +    +   Q
Sbjct: 521 -PNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQSVKQ 579

Query: 242 YFVEMIE 248
              E ++
Sbjct: 580 ILSEFLQ 586



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 109/253 (43%), Gaps = 11/253 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N +D A      M+     P++  +  LL  + +           K       +  +M  
Sbjct: 47  NTLDDALSSFNRMLHMHPPPSIADFTKLLISITKM----------KHYSTVLSLSHQMDS 96

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
            GI P++ + +I+++ +    +   +   L  + + G  P +AT++++++ LC  G+I +
Sbjct: 97  FGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGE 156

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
              L  +M+  G  P+  TY             + A++L R M E G C P++  Y  +I
Sbjct: 157 VLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSM-EQGNCQPDVVVYTSII 215

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                  ++     +++++   G+ P + +Y  LIH LC   +WK       EM+   ++
Sbjct: 216 DSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIM 275

Query: 253 PQKVTFETLYRGL 265
           P  V F T+   L
Sbjct: 276 PNVVIFSTVVDAL 288



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 1/154 (0%)

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           ++DA      M+     PS   +          K  +  + L  QM   G+  PN+++ N
Sbjct: 49  LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGI-PPNIYTLN 107

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
           ILI  F  L R+     +   +   G  P++ ++  LI GLC + K  E    F +MI +
Sbjct: 108 ILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGE 167

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           G  P  VT+ TL  GL +        RL + +++
Sbjct: 168 GFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQ 201



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 72/142 (50%), Gaps = 10/142 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT +I G C+   ++ A      +  +G+ PNV TY +++NG+C++  L          
Sbjct: 455 IYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLL---------- 504

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+F EM+ +G  P+  +++++   + R ++    +  L  M  +G    V+T + +
Sbjct: 505 AEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVL 564

Query: 121 VKCLCSCGRIEDAEELLGEMVR 142
           V+ L   G  +  +++L E ++
Sbjct: 565 VEMLSDDGLDQSVKQILSEFLQ 586


>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 142/277 (51%), Gaps = 11/277 (3%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            + +L++GWCK   +  A   + EM + G  P+VVTY  L+   C           EK  +
Sbjct: 1593 FNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYC----------MEKDFQ 1642

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                + DEMR R   P+V +++I++H   +A + + +LD  + +KE G+ P  + Y+S++
Sbjct: 1643 TVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLI 1702

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              L   GR+EDA  ++ EM   G+ P+  T+N           A  A+KL  +M+E   C
Sbjct: 1703 YILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQS-C 1761

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             P++ +Y  L+ +      + ++  +   +    + PD  +YT+L+  LC   K  ++C 
Sbjct: 1762 NPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCL 1821

Query: 242  YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
            +  EM+ KG  P++ TF+ +   L + ++   +++++
Sbjct: 1822 FLEEMVSKGFAPKQETFDLVMEKLEKRNLQSVYKKIQ 1858



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 114/235 (48%), Gaps = 12/235 (5%)

Query: 29   GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
            GV  +    NVLL+ +C+          E++++ A  VF E+R   I PD  SF+ ++H 
Sbjct: 1551 GVVKDTKAMNVLLDTLCK----------ERSVKRARGVFQELR-GTIPPDENSFNTLVHG 1599

Query: 89   YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
            + +A   + +LD +  MK+ G  P+V TY+S+V+  C     +    LL EM +    P+
Sbjct: 1600 WCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPN 1659

Query: 149  AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
              TY               A+  + ++KEDG+  P+   YN LI +     R++    + 
Sbjct: 1660 VVTYTILMHALGKAGRTREALDTFDKLKEDGV-APDASFYNSLIYILGRAGRLEDAYSVV 1718

Query: 209  NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             +++ +G+ P++ ++  LI   C+  + + A +  V+M E+   P   T+  L +
Sbjct: 1719 EEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLK 1773



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 90/214 (42%), Gaps = 2/214 (0%)

Query: 81   SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
            S+ +++ +  +  Q  L    +N M E G   ++ T + V++ L    R  +A +   +M
Sbjct: 1488 SYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKM 1547

Query: 141  VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
             R GV    +  N         +    A  ++++++  G   P+ +S+N L+  +     
Sbjct: 1548 DRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELR--GTIPPDENSFNTLVHGWCKARM 1605

Query: 201  MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
            +    +   ++K  G  P + +YT L+   C ++ ++       EM ++   P  VT+  
Sbjct: 1606 LKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTI 1665

Query: 261  LYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
            L   L ++   R       KL E+ +   + F N
Sbjct: 1666 LMHALGKAGRTREALDTFDKLKEDGVAPDASFYN 1699


>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 142/277 (51%), Gaps = 11/277 (3%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            + +L++GWCK   +  A   + EM + G  P+VVTY  L+   C           EK  +
Sbjct: 1552 FNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYC----------MEKDFQ 1601

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                + DEMR R   P+V +++I++H   +A + + +LD  + +KE G+ P  + Y+S++
Sbjct: 1602 TVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLI 1661

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              L   GR+EDA  ++ EM   G+ P+  T+N           A  A+KL  +M+E   C
Sbjct: 1662 YILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQS-C 1720

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             P++ +Y  L+ +      + ++  +   +    + PD  +YT+L+  LC   K  ++C 
Sbjct: 1721 NPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCL 1780

Query: 242  YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
            +  EM+ KG  P++ TF+ +   L + ++   +++++
Sbjct: 1781 FLEEMVSKGFAPKQETFDLVMEKLEKRNLQSVYKKIQ 1817



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 114/235 (48%), Gaps = 12/235 (5%)

Query: 29   GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
            GV  +    NVLL+ +C+          E++++ A  VF E+R   I PD  SF+ ++H 
Sbjct: 1510 GVVKDTKAMNVLLDTLCK----------ERSVKRARGVFQELR-GTIPPDENSFNTLVHG 1558

Query: 89   YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
            + +A   + +LD +  MK+ G  P+V TY+S+V+  C     +    LL EM +    P+
Sbjct: 1559 WCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPN 1618

Query: 149  AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
              TY               A+  + ++KEDG+  P+   YN LI +     R++    + 
Sbjct: 1619 VVTYTILMHALGKAGRTREALDTFDKLKEDGV-APDASFYNSLIYILGRAGRLEDAYSVV 1677

Query: 209  NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             +++ +G+ P++ ++  LI   C+  + + A +  V+M E+   P   T+  L +
Sbjct: 1678 EEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLK 1732



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 90/214 (42%), Gaps = 2/214 (0%)

Query: 81   SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
            S+ +++ +  +  Q  L    +N M E G   ++ T + V++ L    R  +A +   +M
Sbjct: 1447 SYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKM 1506

Query: 141  VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
             R GV    +  N         +    A  ++++++  G   P+ +S+N L+  +     
Sbjct: 1507 DRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELR--GTIPPDENSFNTLVHGWCKARM 1564

Query: 201  MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
            +    +   ++K  G  P + +YT L+   C ++ ++       EM ++   P  VT+  
Sbjct: 1565 LKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTI 1624

Query: 261  LYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
            L   L ++   R       KL E+ +   + F N
Sbjct: 1625 LMHALGKAGRTREALDTFDKLKEDGVAPDASFYN 1658


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 154/296 (52%), Gaps = 16/296 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI G+CK+ R++ A  ++ + I  G EP+ +TYN  +NG+C+             + +A 
Sbjct: 261 LINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGH----------VGHAL 310

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           KV D M   G +PDV +++IV++   +  Q + +   LN M E+G  P + T+++++  L
Sbjct: 311 KVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVAL 370

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           CS  R+E+A +L  ++   G+ P   T+N          D   A++L+ +MK  G C P+
Sbjct: 371 CSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSG-CTPD 429

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
             +YN LI    +L ++    ++  +++ +G      +Y  +I GLC+K + +EA + F 
Sbjct: 430 EVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFD 489

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE-----SITFGSEFQNY 295
           +M  +G+    +TF TL  GL +   +    +L  ++  E     +IT+ S   +Y
Sbjct: 490 QMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHY 545



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 145/296 (48%), Gaps = 20/296 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y + + G C+   +  A + +  M++ G +P+V TYN+++N +C+   L           
Sbjct: 293 YNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLE---------- 342

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ + ++M  RG  PD+T+F+ ++      ++ + +LD    +  KG+ P V T++ ++
Sbjct: 343 EAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILI 402

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G  + A  L  EM  +G  P   TYN              A+ L ++M+  G C
Sbjct: 403 NALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAG-C 461

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  +YN +I       R++   E+++ +   G+  +  ++  LI GLC+ ++  +A Q
Sbjct: 462 PRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQ 521

Query: 242 YFVEMIEKGLLPQKVTFETLY-----RGLIQ--SDMLRTWRRLKKKLDEESITFGS 290
              +MI +GL P  +T+ ++      +G I+  +D+L+T        + + +T+G+
Sbjct: 522 LISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMT--ANGFEVDVVTYGT 575



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 138/316 (43%), Gaps = 50/316 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L+    + +++ + E    EM ERG++P+VVT+N L+  +CR             +
Sbjct: 152 VYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCR----------AHQV 201

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R A  + +EM   G+ PD T+F+ ++  +      + +L     M E G  PT  T + +
Sbjct: 202 RTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVL 261

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  GR+EDA   + + + NG  P   TYN F            A+K+   M ++G 
Sbjct: 262 INGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGH 321

Query: 181 ----------------------------------CVPNMHSYNILIGMFMALNRMDMVRE 206
                                             C+P++ ++N LI    + NR++   +
Sbjct: 322 DPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALD 381

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +   V   GL PD+ ++ +LI+ LC+    + A + F EM   G  P +VT+ TL     
Sbjct: 382 LARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLI---- 437

Query: 267 QSDMLRTWRRLKKKLD 282
             D L +  +L K LD
Sbjct: 438 --DNLCSLGKLGKALD 451



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 140/317 (44%), Gaps = 46/317 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++   CK  +++ A+  L +M+ERG  P++ T+N L+  +C         R E+ + 
Sbjct: 328 YNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCS------GNRLEEALD 381

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V     ++G+ PDV +F+I+++   +   PQL+L     MK  G  P   TY++++
Sbjct: 382 LARQV----TLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLI 437

Query: 122 KCLCSCG-----------------------------------RIEDAEELLGEMVRNGVC 146
             LCS G                                   RIE+AEE+  +M   G+ 
Sbjct: 438 DNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGIS 497

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
            +A T+N         K  + A +L  QM  +GL  PN  +YN ++  +     +    +
Sbjct: 498 RNAITFNTLIDGLCKDKRIDDANQLISQMISEGL-QPNNITYNSILTHYCKQGDIKKAAD 556

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           I   +  +G   D+ +Y  LI+GLC+  + + A +    M  KG+      +  + + L 
Sbjct: 557 ILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLF 616

Query: 267 QSDMLRTWRRLKKKLDE 283
           + +  R    L +++ E
Sbjct: 617 RRNNTRDAMNLFREMTE 633



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 120/270 (44%), Gaps = 47/270 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK  RI+ AE    +M  +G+  N +T+N L++G+C+          +K I 
Sbjct: 468 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCK----------DKRID 517

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  +M   G++P+  +++ +L  Y +    + + D L  M   G    V TY +++
Sbjct: 518 DANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLI 577

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR + A +LL  M   G+  + + YN   +    R +   AM L+R+M E    
Sbjct: 578 NGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTE---- 633

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ-KWKEAC 240
                                            G  PD  +Y ++  GLC      +EA 
Sbjct: 634 --------------------------------VGEPPDAFTYKIVFRGLCRGGGSIREAF 661

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
            + +EM++KG +P+  +F  L  GL+   M
Sbjct: 662 DFLLEMVDKGFIPEFSSFRMLAEGLLNLGM 691



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 117/264 (44%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI   CK+    +A R   EM   G  P+ VTYN L++ +C    L           
Sbjct: 398 FNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLG---------- 447

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  EM   G      +++ ++    +  + + + +  + M  +GI     T+++++
Sbjct: 448 KALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLI 507

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   RI+DA +L+ +M+  G+ P+  TYN     Y  + D   A  + + M  +G  
Sbjct: 508 DGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFE 567

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V ++ +Y  LI       R  +  ++   ++  G+     +Y  +I  L  +   ++A  
Sbjct: 568 V-DVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMN 626

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F EM E G  P   T++ ++RGL
Sbjct: 627 LFREMTEVGEPPDAFTYKIVFRGL 650



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 116/253 (45%), Gaps = 11/253 (4%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G++ + V YN LLN +   + +          +  E V+ EM  RGI+PDV +F+ ++  
Sbjct: 145 GIQADTVVYNHLLNVLVEGSKM----------KLLETVYSEMGERGIKPDVVTFNTLMKA 194

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
             RAHQ + ++  L  M   G+ P   T++++++     G I+ A  +   M+  G  P+
Sbjct: 195 LCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPT 254

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             T N     Y        A+   +Q   +G   P+  +YN  +        +    ++ 
Sbjct: 255 KVTVNVLINGYCKLGRVEDALGYIQQEIANGF-EPDQITYNTFVNGLCQNGHVGHALKVM 313

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           + +   G  PD+ +Y ++++ LC+  + +EA     +M+E+G LP   TF TL   L   
Sbjct: 314 DVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSG 373

Query: 269 DMLRTWRRLKKKL 281
           + L     L +++
Sbjct: 374 NRLEEALDLARQV 386



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 52/96 (54%)

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           YN L+ + +  ++M ++  +++++   G+ PD+ ++  L+  LC   + + A     EM 
Sbjct: 153 YNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMS 212

Query: 248 EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
             G+ P + TF TL +G ++   ++   R+K ++ E
Sbjct: 213 SSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLE 248


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 148/280 (52%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+  + +   +D AER +G M++ G++PN+VT+N ++NG+C+   +           
Sbjct: 188 YNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKM----------E 237

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A KVFDEM   G+ PD  S++ ++  Y +A     +L     M +KGI P V T++S++
Sbjct: 238 DARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLI 297

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G +E A  L+ +M   G+  +  T+      +  +   + A+   R M++  + 
Sbjct: 298 HVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRI- 356

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YN LI  +  + RMD  RE+ ++++  GL PD+ +Y+ +I   C+      A +
Sbjct: 357 KPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFE 416

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
              +M+EKG+LP  +T+ +L R L +   L     L K +
Sbjct: 417 LNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNM 456



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 132/283 (46%), Gaps = 16/283 (5%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A RF   M+  GV PNV TYN+L+  +C R   H  E        A  +  +MR  G  P
Sbjct: 134 ARRFFDSMLSDGVAPNVYTYNILIRALCGRG--HRKE--------ALSILRDMRGAGCGP 183

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           +V +++ ++  + RA +   +   +  M + G+ P + T++S+V  +C  G++EDA ++ 
Sbjct: 184 NVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVF 243

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            EM+R G+ P   +YN     Y     ++ A+ ++ +M + G+ +P++ ++  LI +   
Sbjct: 244 DEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGI-MPDVVTFTSLIHVMCK 302

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
              ++    +   ++  GL  +  ++T LI G C+K    +A      M +  + P  V 
Sbjct: 303 AGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVC 362

Query: 258 FETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           +  L  G      +   R L      K L  + +T+ +    Y
Sbjct: 363 YNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAY 405



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 144/330 (43%), Gaps = 61/330 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G+CK   +D A   +  M +  ++P+VV YN L+NG C    +           
Sbjct: 328 FTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMD---------- 377

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++  EM  +G++PDV ++S ++  Y +      + +    M EKG+ P   TYSS++
Sbjct: 378 EARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLI 437

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC   R+ DA  L   M++ G+ P   TY      +    +   A+ L+ +M + G+ 
Sbjct: 438 RVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGV- 496

Query: 182 VPNMHSYNILIG-------------------------------MFMALNRMDMVREIWND 210
           +P++ +Y++LI                                  M   R   ++ +   
Sbjct: 497 LPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLAL 556

Query: 211 VKG---SGLGPDLDS----------------YTMLIHGLCEKQKWKEACQYFVEMIEKGL 251
           +KG    GL  + D                 Y++LIHG C      +A  +  +M+++G 
Sbjct: 557 LKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGF 616

Query: 252 LPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            P   +  +L RGL ++ M+    ++ ++L
Sbjct: 617 APNSTSTISLIRGLFENGMVVEADQVIQQL 646



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 14/244 (5%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G  P+V+ YN +L  +   ASL  + RF          FD M   G+ P+V +++I++  
Sbjct: 111 GYVPSVLAYNAVLLAL-SDASLTSARRF----------FDSMLSDGVAPNVYTYNILIRA 159

Query: 89  Y-SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
              R H+ + +L  L  M+  G  P V TY+++V      G ++ AE L+G M+  G+ P
Sbjct: 160 LCGRGHRKE-ALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKP 218

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
           +  T+N              A K++ +M  +GL  P+  SYN L+G +           +
Sbjct: 219 NLVTFNSMVNGMCKAGKMEDARKVFDEMMREGL-APDGVSYNTLVGGYCKAGCSHEALSV 277

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           + ++   G+ PD+ ++T LIH +C+    + A     +M E+GL   +VTF  L  G  +
Sbjct: 278 FAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCK 337

Query: 268 SDML 271
              L
Sbjct: 338 KGFL 341



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 90/219 (41%), Gaps = 40/219 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV----------------- 44
           YTSLI G CK   ++ A     +M++ GV P+VVTY+VL+NG+                 
Sbjct: 468 YTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLY 527

Query: 45  -----------------CRRASLHPSERFEK------TIRNAEKVFDEMRVRGIEPDVTS 81
                            CR+A L       K       +  A+KV+  M  R    D + 
Sbjct: 528 HEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSV 587

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           +S+++H + RA     +L     M ++G  P   +  S+++ L   G + +A++++ +++
Sbjct: 588 YSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLL 647

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
                  AE             + +  + +   M +DGL
Sbjct: 648 NCCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAKDGL 686


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 160/305 (52%), Gaps = 25/305 (8%)

Query: 2   YTSLIYGWCKINRIDM---AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK 58
           Y +LI G+CK+ R+     A+  L EM+E  V PN VT+NVL++G C+          ++
Sbjct: 268 YNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCK----------DE 317

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY---SRAHQPQLSLDKLNFMKEKGICPTVA 115
            +  A KVF+EM+ +G++P V +++ +++      + ++ ++ LD+   M    + P V 
Sbjct: 318 NLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDE---MLSSNLKPNVI 374

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           TY++++   C    +E+A EL   + + G+ P+  T+N     Y        A  L + M
Sbjct: 375 TYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVM 434

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            E G  +PN  +YN LI  F    +M+ V+ + N+++  G+  D  +Y +LI   CEK++
Sbjct: 435 LEKGF-LPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKE 493

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES-----ITFGS 290
            K+A +   EM++KGL P  +T+  L  G      LR    L+K++++E      +T+  
Sbjct: 494 PKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNV 553

Query: 291 EFQNY 295
             Q Y
Sbjct: 554 LIQGY 558



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 141/270 (52%), Gaps = 11/270 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+ G C   +++ A+  L EM+   ++PNV+TYN L+NG C++          K + 
Sbjct: 341 YNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKK----------KLLE 390

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++FD +  +G+ P+V +F+ +LH Y +  + + +      M EKG  P  +TY+ ++
Sbjct: 391 EARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLI 450

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++E+ + LL EM   GV     TYN     +  +K+   A +L  +M + GL 
Sbjct: 451 VGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGL- 509

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YNIL+  +     +     +   ++  G   ++ +Y +LI G C K K ++A  
Sbjct: 510 KPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANG 569

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              EM+EKGL+P + T+E +   +++   L
Sbjct: 570 LLNEMLEKGLIPNRTTYEIIKEEMMEKGFL 599



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 114/211 (54%), Gaps = 4/211 (1%)

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           E      E V+ EM  R I P++ +F+ V++   +  +   + D ++ MK  G  P V T
Sbjct: 208 ENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVT 267

Query: 117 YSSVVKCLCSCGRIE---DAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           Y++++   C  GR+     A+ +L EMV N V P++ T+N     +   ++ + A+K++ 
Sbjct: 268 YNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFE 327

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           +M+  GL  P + +YN L+       +++  + + +++  S L P++ +Y  LI+G C+K
Sbjct: 328 EMQSQGL-KPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKK 386

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           +  +EA + F  + ++GL P  +TF TL  G
Sbjct: 387 KLLEEARELFDNIGKQGLTPNVITFNTLLHG 417



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 10/133 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI  WC+      A R + EM+++G++P+ +TYN+LLNG C           E  +R
Sbjct: 481 YNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYC----------MEGNLR 530

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +M   G   +V ++++++  Y R  + + +   LN M EKG+ P   TY  + 
Sbjct: 531 AALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIK 590

Query: 122 KCLCSCGRIEDAE 134
           + +   G + D E
Sbjct: 591 EEMMEKGFLPDIE 603


>gi|356531098|ref|XP_003534115.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Glycine max]
          Length = 466

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 130/258 (50%), Gaps = 15/258 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L++GWC++       + L EMIE G  P+  TYN  ++  C+             I 
Sbjct: 169 YNILVFGWCRVRNPTRGMKLLEEMIELGHRPDNFTYNTAIDTYCKTG----------MIT 218

Query: 62  NAEKVFDEMRVRGI---EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A  +F+ MR +G     P   +++I++   ++  + +     +  M   G  P V TY 
Sbjct: 219 EAVDLFEFMRTKGSTISSPTAKTYAIIIVALAQHDRMEDCFKLIGHMISSGCLPDVTTYK 278

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            +++ +C CG+I++A + L EM      P   TYNCF K     K +  A+KLY +M E 
Sbjct: 279 EIIEGMCMCGKIDEAYKFLEEMGNKSYRPDIVTYNCFLKVLCDNKKSEDALKLYGRMIEL 338

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
             C+P++ +YN+LI MF  ++  D   E W ++   G  PD D+Y ++I GL    K ++
Sbjct: 339 N-CIPSVQTYNMLISMFFEMDDPDGAFETWQEIDNRGCRPDTDTYCVMIEGLFNCNKMED 397

Query: 239 ACQYFVEMIEKGL-LPQK 255
           AC    E+I +G+ LP K
Sbjct: 398 ACFLLEEVINEGVKLPYK 415



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 116/289 (40%), Gaps = 60/289 (20%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+   CK   ++ AE    +M  + V+PN  TYN+L+ G CR             +R
Sbjct: 135 FNLLLDALCKCCLVEDAESLYKKM-RKTVKPNAETYNILVFGWCR-------------VR 180

Query: 62  NAE---KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC---PTVA 115
           N     K+ +EM   G  PD  +++  +  Y +      ++D   FM+ KG     PT  
Sbjct: 181 NPTRGMKLLEEMIELGHRPDNFTYNTAIDTYCKTGMITEAVDLFEFMRTKGSTISSPTAK 240

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           TY+ ++  L    R+ED  +L+G M+ +G                               
Sbjct: 241 TYAIIIVALAQHDRMEDCFKLIGHMISSG------------------------------- 269

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
                C+P++ +Y  +I       ++D   +   ++      PD+ +Y   +  LC+ +K
Sbjct: 270 -----CLPDVTTYKEIIEGMCMCGKIDEAYKFLEEMGNKSYRPDIVTYNCFLKVLCDNKK 324

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD----MLRTWRRLKKK 280
            ++A + +  MIE   +P   T+  L     + D       TW+ +  +
Sbjct: 325 SEDALKLYGRMIELNCIPSVQTYNMLISMFFEMDDPDGAFETWQEIDNR 373



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 10/176 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G C   +ID A +FL EM  +   P++VTYN  L  +C            K   
Sbjct: 277 YKEIIEGMCMCGKIDEAYKFLEEMGNKSYRPDIVTYNCFLKVLCD----------NKKSE 326

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K++  M      P V ++++++ ++     P  + +    +  +G  P   TY  ++
Sbjct: 327 DALKLYGRMIELNCIPSVQTYNMLISMFFEMDDPDGAFETWQEIDNRGCRPDTDTYCVMI 386

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + L +C ++EDA  LL E++  GV    + ++ F  +     D     +L   MK+
Sbjct: 387 EGLFNCNKMEDACFLLEEVINEGVKLPYKKFDSFLMQLSVIGDLQAIHRLSEHMKK 442



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 16/189 (8%)

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           +  ++ ++  LC C  +EDAE L  +M R  V P+AETYN     +   ++    MKL  
Sbjct: 132 INAFNLLLDALCKCCLVEDAESLYKKM-RKTVKPNAETYNILVFGWCRVRNPTRGMKLLE 190

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN--DVKGSGL-GPDLDSYTMLIHGL 230
           +M E G   P+  +YN  I  +     +    +++     KGS +  P   +Y ++I  L
Sbjct: 191 EMIELGH-RPDNFTYNTAIDTYCKTGMITEAVDLFEFMRTKGSTISSPTAKTYAIIIVAL 249

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
            +  + ++  +    MI  G LP   T++ +  G+     +           +E+  F  
Sbjct: 250 AQHDRMEDCFKLIGHMISSGCLPDVTTYKEIIEGMCMCGKI-----------DEAYKFLE 298

Query: 291 EFQNYHFKP 299
           E  N  ++P
Sbjct: 299 EMGNKSYRP 307


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 140/282 (49%), Gaps = 11/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI   C   R+  A     +M+ RG  P+VVTY++LL+  C+ +            R
Sbjct: 165 FNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGY----------R 214

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + DEMR +G EPD+ +++++++          +L+ L+ +   G  P   TY+ V+
Sbjct: 215 QAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVL 274

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC   R ++ EEL  EM  N   P   T+N        +   + A+K+   M E G C
Sbjct: 275 KSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHG-C 333

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y+ ++     + R+D   E+ + +K  G  PD  +YT ++ GLC  ++W+ A +
Sbjct: 334 IPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEE 393

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
              EM+     P +VTF T+   L Q  ++    ++ +++ E
Sbjct: 394 LMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSE 435



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 127/270 (47%), Gaps = 11/270 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT ++   C   R    E    EM      P+ VT+N ++  +C++            + 
Sbjct: 270 YTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQG----------LVD 319

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KV D M   G  PD+ ++S +L       +   +++ L+ +K  G  P    Y++V+
Sbjct: 320 RAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVL 379

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LCS  + E AEEL+ EMV +   P   T+N        +   + A+K+  QM E+G C
Sbjct: 380 KGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENG-C 438

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN +I        +D   E+ ++++  G  PD+ ++  L+ GLC   +W++A Q
Sbjct: 439 NPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQ 498

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
             V M+     P   TF T+   L Q  +L
Sbjct: 499 LMVNMMHSDCPPDATTFNTVITSLCQKGLL 528



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 144/294 (48%), Gaps = 15/294 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+++ G C I + + AE  + EM+     P+ VT+N ++  +C++            + 
Sbjct: 375 YTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKG----------LVD 424

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KV ++M   G  PD+ +++ ++           +++ L+ ++  G  P + T+++++
Sbjct: 425 RAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLL 484

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LCS  R EDAE+L+  M+ +   P A T+N        +     A++  + M E+G C
Sbjct: 485 KGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENG-C 543

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG-PDLDSYTMLIHGLCEKQKWKEAC 240
           +PN  +YNI++    AL +    +E    + G   G PDL +Y  +I  + +  K +EA 
Sbjct: 544 IPNQSTYNIVVD---ALLKAGKTQEALKLLSGMTNGTPDLITYNTVISNITKAGKMEEAL 600

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
                M+  GL P  +T+ +L  G+ + D      R+  +L +  ++  + F N
Sbjct: 601 DLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYN 654



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 120/276 (43%), Gaps = 13/276 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G C    ID A   L  +   G +P++VT+N LL G+C        +R+E    
Sbjct: 445 YNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCS------VDRWE---- 494

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE++   M      PD T+F+ V+    +      +++ L  M E G  P  +TY+ VV
Sbjct: 495 DAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVV 554

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G+ ++A +LL  M  NG  P   TYN              A+ L R M  +GL 
Sbjct: 555 DALLKAGKTQEALKLLSGMT-NGT-PDLITYNTVISNITKAGKMEEALDLLRVMVSNGL- 611

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y  L       +  D    +   ++  GL PD   Y  ++ G C+  +   A  
Sbjct: 612 SPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAID 671

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F  M+  G +P + T+  L   L    +L   ++L
Sbjct: 672 CFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQL 707



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 111/279 (39%), Gaps = 21/279 (7%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI   C   R+  AER    +   G    VVTYN ++NG CR             I +A 
Sbjct: 104 LIKRLCSGGRVADAERVFATL---GASATVVTYNTMVNGYCRAGR----------IEDAR 150

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           ++   M      PD  +F+ ++       +   +L   + M  +G  P+V TYS ++   
Sbjct: 151 RLISGMP---FPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDAT 207

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C       A  LL EM   G  P   TYN          D + A+ +   +   G C P+
Sbjct: 208 CKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHG-CKPD 266

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
             +Y  ++       R   V E++ ++  +   PD  ++  ++  LC++     A +   
Sbjct: 267 AVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVD 326

Query: 245 EMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLKK 279
            M E G +P  VT+ ++  GL       D +    RLK 
Sbjct: 327 HMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKS 365



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 10/144 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I    K  +++ A   L  M+  G+ P+ +TY  L  G+CR          E    
Sbjct: 583 YNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICR----------EDGTD 632

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++   ++  G+ PD T ++ +L  + +  +  +++D    M   G  P  +TY  ++
Sbjct: 633 RAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILL 692

Query: 122 KCLCSCGRIEDAEELLGEMVRNGV 145
           + L     +++A++LL  +   GV
Sbjct: 693 EALAYECLLDEAKQLLVNLCSLGV 716


>gi|7340725|emb|CAB82968.1| putative protein [Arabidopsis thaliana]
          Length = 308

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 142/250 (56%), Gaps = 11/250 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GWC++  +  A R   +MI+ G++P++V +NV+L G+ R  S+  S+       
Sbjct: 10  YTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLR--SMKKSD------- 60

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F  M+ +G  P+V S++I++  + +    + +++  + M + G+ P  A Y+ ++
Sbjct: 61  -AIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLI 119

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               +  +++   ELL EM   G  P  +TYN   K    +K      ++Y +M ++ + 
Sbjct: 120 TGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEI- 178

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++H++N+++  +      +M R +W+++   G+ PD +SYT+LI GL  + K +EAC+
Sbjct: 179 EPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACR 238

Query: 242 YFVEMIEKGL 251
           Y  EM++KG+
Sbjct: 239 YLEEMLDKGM 248



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 1/175 (0%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P + TY+ ++   C    + +A  +  +M+ +G+ P    +N   +        + A+KL
Sbjct: 5   PNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKL 64

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
           +  MK  G C PN+ SY I+I  F   + M+   E ++D+  SGL PD   YT LI G  
Sbjct: 65  FHVMKSKGPC-PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFG 123

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            ++K     +   EM EKG  P   T+  L + +    M     R+  K+ +  I
Sbjct: 124 TQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEI 178



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 93/214 (43%), Gaps = 11/214 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I  +CK + ++ A  +  +M++ G++P+   Y  L+ G             +K + 
Sbjct: 80  YTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGT----------QKKLD 129

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++  EM+ +G  PD  +++ ++ + +    P+      N M +  I P++ T++ ++
Sbjct: 130 TVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIM 189

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K        E    +  EM++ G+CP   +Y    +       +  A +   +M + G+ 
Sbjct: 190 KSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMK 249

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            P +  YN     F    + ++  E+    K SG
Sbjct: 250 TP-LIDYNKFAADFHRGGQPEIFEELAQRAKFSG 282



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 10/159 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G+    ++D     L EM E+G  P+  TYN L+  +            +K  
Sbjct: 114 VYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMAN----------QKMP 163

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +  +++++M    IEP + +F++++  Y  A   ++     + M +KGICP   +Y+ +
Sbjct: 164 EHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVL 223

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           ++ L S G+  +A   L EM+  G+      YN F  ++
Sbjct: 224 IRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAADF 262


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 145/294 (49%), Gaps = 26/294 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFE---- 57
           YTSLIYG+C + ++D A   L EM+ + V PNV T+N L++G+C+   +  ++       
Sbjct: 227 YTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMM 286

Query: 58  ---------------------KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                K    A+ VF+ M   G+  DV S+S+++   S+     
Sbjct: 287 KEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLD 346

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++D    M+ + + P V  YSS++  LC  GRI  A + + EM   G  P+  TY    
Sbjct: 347 EAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLI 406

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A+ L +++K+ G+   NM++YNIL+       R+   ++++ D+   G 
Sbjct: 407 DALCKSHQVDKAIALLKKIKDQGI-QANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGH 465

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
             D+ +Y+++I+GLC++  + EA     +M +KG +P  + +ET+     + DM
Sbjct: 466 NVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDM 519



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 150/285 (52%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CKI +   A R L ++      P+VV YN +++G+C+          +K +R
Sbjct: 157 YGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCK----------DKLVR 206

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  ++ EM  + + P+V +++ +++ +    Q   +   LN M  K + P V T++++V
Sbjct: 207 DAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLV 266

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++ +A+ L+  M++ GV P   TYN     Y   K+A  A  ++  M + G+ 
Sbjct: 267 DGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVT 326

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++HSY+++I     +  +D   +++  ++   + PD+ +Y+ LI GLC+  +   A +
Sbjct: 327 C-DVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALK 385

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           Y  EM ++G  P  +T+ +L   L +S  +     L KK+ ++ I
Sbjct: 386 YVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGI 430



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 111/241 (46%), Gaps = 19/241 (7%)

Query: 28  RGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 87
            G++ N +T N+L+N  C            + I +A  VF ++   G +PD+ +++ ++ 
Sbjct: 78  HGIQSNYITLNILINSYCHL----------RQINSAFSVFAKILKLGYQPDIITYTTLIR 127

Query: 88  VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL----GEMVRN 143
                 Q + SL+  + +  +GI     +Y +++  LC  G+   A  LL    GE+ R 
Sbjct: 128 GLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICR- 186

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
              P    YN         K    A  LY +M E  +  PN+ +Y  LI  F  + ++D 
Sbjct: 187 ---PDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRV-FPNVVTYTSLIYGFCIVGQLDK 242

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
              + N++    + P++ ++  L+ GLC++ K +EA      M+++G+ P   T+  L  
Sbjct: 243 AFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMD 302

Query: 264 G 264
           G
Sbjct: 303 G 303



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 10/174 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI G CK  RI+ A +++ EM +RG  PNV+TY  L++ +C+      S + +K I 
Sbjct: 367 YSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCK------SHQVDKAIA 420

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             +K+ D+    GI+ ++ +++I++    +  +   +      +  KG    V TYS ++
Sbjct: 421 LLKKIKDQ----GIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMI 476

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
             LC     ++A  LL +M   G  P A  Y      +  +   + A KL R+M
Sbjct: 477 NGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREM 530



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 78/140 (55%), Gaps = 10/140 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI   CK +++D A   L ++ ++G++ N+ TYN+L++G+C+   L           
Sbjct: 402 YTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRL----------T 451

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A+KVF ++ ++G   DV ++SI+++   +      +L  L+ M++KG  P    Y +++
Sbjct: 452 DAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETII 511

Query: 122 KCLCSCGRIEDAEELLGEMV 141
                    + AE+LL EM+
Sbjct: 512 NAFFEKDMNDKAEKLLREMI 531



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 106/224 (47%), Gaps = 7/224 (3%)

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           +F  M + GI+ +  + +I+++ Y    Q   +      + + G  P + TY+++++ LC
Sbjct: 71  LFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLC 130

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
             G+++++      +V  G+     +Y               A++L R++ E  +C P++
Sbjct: 131 LNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKI-EGEICRPDV 189

Query: 186 HSYNILIGMFMALNRMDMVREIWN---DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
             YN +I     L +  +VR+ ++   ++    + P++ +YT LI+G C   +  +A   
Sbjct: 190 VMYNTIID---GLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGL 246

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             EM+ K + P   TF TL  GL +   +R  + L   + +E +
Sbjct: 247 LNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGV 290



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/206 (19%), Positives = 83/206 (40%), Gaps = 1/206 (0%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           + +A   F+ M      P +  F  +L    +     + +     M+  GI     T + 
Sbjct: 30  LNDAIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNI 89

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++   C   +I  A  +  ++++ G  P   TY    +          ++  + ++   G
Sbjct: 90  LINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQG 149

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           + + ++ SY  LI     + +      +   ++G    PD+  Y  +I GLC+ +  ++A
Sbjct: 150 IKLDHV-SYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDA 208

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGL 265
              + EM EK + P  VT+ +L  G 
Sbjct: 209 FDLYCEMFEKRVFPNVVTYTSLIYGF 234


>gi|15228767|ref|NP_191806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181319|sp|Q9LZP3.1|PP293_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62470, mitochondrial; Flags: Precursor
 gi|7340718|emb|CAB82961.1| putative protein [Arabidopsis thaliana]
 gi|34365579|gb|AAQ65101.1| At3g62470 [Arabidopsis thaliana]
 gi|332646835|gb|AEE80356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 141/250 (56%), Gaps = 11/250 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GWC++  +  A R   +MI++G++P++V +NV+L G+ R           +   
Sbjct: 301 YTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLR----------SRKKS 350

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+F  M+ +G  P+V S++I++  + +    + +++  + M + G+ P  A Y+ ++
Sbjct: 351 DAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLI 410

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               +  +++   ELL EM   G  P  +TYN   K    +K    A ++Y +M ++ + 
Sbjct: 411 TGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEI- 469

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++H++N+++  +      +M R +W ++   G+ PD +SYT+LI GL  + K +EAC+
Sbjct: 470 EPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACR 529

Query: 242 YFVEMIEKGL 251
           Y  EM++KG+
Sbjct: 530 YLEEMLDKGM 539



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 8/232 (3%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH---QPQLSLDKLNFMKEKGICPTV 114
           K  + A  +F+ M+    +  V + + +L    RA    + Q+  DKL   KE+   P +
Sbjct: 243 KERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKL---KER-FTPNM 298

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            TY+ ++   C    + +A  +  +M+  G+ P    +N   +     +  + A+KL+  
Sbjct: 299 MTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHV 358

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           MK  G C PN+ SY I+I  F   + M+   E ++D+  SGL PD   YT LI G   ++
Sbjct: 359 MKSKGPC-PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQK 417

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           K     +   EM EKG  P   T+  L + +    M     R+  K+ +  I
Sbjct: 418 KLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEI 469



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 117/251 (46%), Gaps = 16/251 (6%)

Query: 34  VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93
           V T N LL+ + R           K  + A+ +FD+++ R   P++ +++++L+ + R  
Sbjct: 264 VETINCLLDSLGR----------AKLGKEAQVLFDKLKER-FTPNMMTYTVLLNGWCRVR 312

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
               +    N M ++G+ P +  ++ +++ L    +  DA +L   M   G CP+  +Y 
Sbjct: 313 NLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYT 372

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
              +++  +     A++ +  M + GL  P+   Y  LI  F    ++D V E+  +++ 
Sbjct: 373 IMIRDFCKQSSMETAIEYFDDMVDSGL-QPDAAVYTCLITGFGTQKKLDTVYELLKEMQE 431

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS---DM 270
            G  PD  +Y  LI  +  ++  + A + + +MI+  + P   TF  + +    +   +M
Sbjct: 432 KGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEM 491

Query: 271 LRT-WRRLKKK 280
            R  W  + KK
Sbjct: 492 GRAVWEEMIKK 502



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 10/159 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G+    ++D     L EM E+G  P+  TYN L+  +            +K  
Sbjct: 405 VYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMAN----------QKMP 454

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A +++++M    IEP + +F++++  Y  A   ++       M +KGICP   +Y+ +
Sbjct: 455 EHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVL 514

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           ++ L   G+  +A   L EM+  G+      YN F  ++
Sbjct: 515 IRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFAADF 553



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 3/201 (1%)

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           +G   D  +++ ++ + ++  Q +  +  L  M  KG+  T+ T++  +K   +    + 
Sbjct: 189 QGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLL-TMETFTIAMKAFAAAKERKK 247

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A  +   M +       ET NC        K    A  L+ ++KE     PNM +Y +L+
Sbjct: 248 AVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKER--FTPNMMTYTVLL 305

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
             +  +  +     IWND+   GL PD+ ++ +++ GL   +K  +A + F  M  KG  
Sbjct: 306 NGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPC 365

Query: 253 PQKVTFETLYRGLIQSDMLRT 273
           P   ++  + R   +   + T
Sbjct: 366 PNVRSYTIMIRDFCKQSSMET 386


>gi|356549210|ref|XP_003542990.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Glycine max]
          Length = 648

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 147/283 (51%), Gaps = 15/283 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV--CRRASLHPSERFEKT 59
           YT L+ GWC++  +  A R   EMI+RG  P+VV +NV+L G+  C++ S          
Sbjct: 344 YTILLSGWCRLKNLLEAGRVWNEMIDRGFNPDVVAHNVMLEGLLKCKKKS---------- 393

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
             +A K+F+ M+ +G  P+V S++I++  + +      +++  + M ++G  P  A Y+ 
Sbjct: 394 --DAIKLFEIMKAKGPSPNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTC 451

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++       +++    LL EM   G  P   TYN   K    +   + A+++Y++M + G
Sbjct: 452 LITGFGRQKKMDMVYSLLKEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSG 511

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  P +H+YN+++  +      +M  EIW+++   G  PD +SY + I GL  + +  EA
Sbjct: 512 I-KPTIHTYNMIMKSYFVTKNYEMGHEIWDEMHQKGCCPDDNSYIVYIGGLIRQDRSGEA 570

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           C+Y  EM+EKG+   K+ +      + ++        L +K++
Sbjct: 571 CKYLEEMLEKGMKAPKLDYNKFASDISKTGNAVILEELARKMN 613



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 97/229 (42%), Gaps = 2/229 (0%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           K  + A  +FD M+  G +  V   + +L   S A   + +      +K++   P++ TY
Sbjct: 286 KQRKKAVGIFDLMKKYGFKVGVDVINFLLDSLSTAKLGKEAQAVFEKLKDR-FTPSLQTY 344

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + ++   C    + +A  +  EM+  G  P    +N   +     K  + A+KL+  MK 
Sbjct: 345 TILLSGWCRLKNLLEAGRVWNEMIDRGFNPDVVAHNVMLEGLLKCKKKSDAIKLFEIMKA 404

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G   PN+ SY I+I  F     M    E ++ +   G  PD   YT LI G   ++K  
Sbjct: 405 KGPS-PNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGFGRQKKMD 463

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
                  EM E+G  P   T+  L + +    M     R+ KK+ +  I
Sbjct: 464 MVYSLLKEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGI 512



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 117/238 (49%), Gaps = 15/238 (6%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G   +  TYN ++  + R      + +FE  +     + +EM  +G+   + +FSI +  
Sbjct: 233 GFAHDSRTYNFMMCVLGR------TRQFETMV----AMLEEMGEKGLL-TMETFSIAIKA 281

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           ++ A Q + ++   + MK+ G    V   + ++  L +    ++A+ +  E +++   PS
Sbjct: 282 FAEAKQRKKAVGIFDLMKKYGFKVGVDVINFLLDSLSTAKLGKEAQAVF-EKLKDRFTPS 340

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREI 207
            +TY      +   K+   A +++ +M + G   P++ ++N+++ G+     + D ++ +
Sbjct: 341 LQTYTILLSGWCRLKNLLEAGRVWNEMIDRGFN-PDVVAHNVMLEGLLKCKKKSDAIK-L 398

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +  +K  G  P++ SYT++I   C+++   EA +YF  M+++G  P    +  L  G 
Sbjct: 399 FEIMKAKGPSPNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGF 456



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 10/175 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G+ +  ++DM    L EM ERG  P+  TYN L+  +    S H  +      
Sbjct: 448 LYTCLITGFGRQKKMDMVYSLLKEMRERGCPPDGRTYNALIKLM---TSQHMPD------ 498

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A +++ +M   GI+P + ++++++  Y      ++  +  + M +KG CP   +Y   
Sbjct: 499 -DAVRIYKKMIQSGIKPTIHTYNMIMKSYFVTKNYEMGHEIWDEMHQKGCCPDDNSYIVY 557

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           +  L    R  +A + L EM+  G+      YN F  +     +A    +L R+M
Sbjct: 558 IGGLIRQDRSGEACKYLEEMLEKGMKAPKLDYNKFASDISKTGNAVILEELARKM 612


>gi|15241508|ref|NP_196986.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173968|sp|Q9LEQ7.1|PP382_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g14820, mitochondrial; Flags: Precursor
 gi|9755750|emb|CAC01881.1| putative protein [Arabidopsis thaliana]
 gi|332004697|gb|AED92080.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 142/250 (56%), Gaps = 11/250 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GWC++  +  A R   +MI+ G++P++V +NV+L G+ R  S+  S        
Sbjct: 300 YTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLR--SMKKS-------- 349

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+F  M+ +G  P+V S++I++  + +    + +++  + M + G+ P  A Y+ ++
Sbjct: 350 DAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLI 409

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               +  +++   ELL EM   G  P  +TYN   K    +K      ++Y +M ++ + 
Sbjct: 410 TGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEI- 468

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++H++N+++  +      +M R +W+++   G+ PD +SYT+LI GL  + K +EAC+
Sbjct: 469 EPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACR 528

Query: 242 YFVEMIEKGL 251
           Y  EM++KG+
Sbjct: 529 YLEEMLDKGM 538



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 8/232 (3%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH---QPQLSLDKLNFMKEKGICPTV 114
           K  + A  +F+ M+    +  V + + +L    RA    + Q+  DKL   KE+   P +
Sbjct: 242 KERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKL---KER-FTPNM 297

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            TY+ ++   C    + +A  +  +M+ +G+ P    +N   +        + A+KL+  
Sbjct: 298 MTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHV 357

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           MK  G C PN+ SY I+I  F   + M+   E ++D+  SGL PD   YT LI G   ++
Sbjct: 358 MKSKGPC-PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQK 416

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           K     +   EM EKG  P   T+  L + +    M     R+  K+ +  I
Sbjct: 417 KLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEI 468



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 93/214 (43%), Gaps = 11/214 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I  +CK + ++ A  +  +M++ G++P+   Y  L+ G             +K + 
Sbjct: 370 YTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGT----------QKKLD 419

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++  EM+ +G  PD  +++ ++ + +    P+      N M +  I P++ T++ ++
Sbjct: 420 TVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIM 479

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K        E    +  EM++ G+CP   +Y    +       +  A +   +M + G+ 
Sbjct: 480 KSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMK 539

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            P +  YN     F    + ++  E+    K SG
Sbjct: 540 TP-LIDYNKFAADFHRGGQPEIFEELAQRAKFSG 572



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 10/159 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G+    ++D     L EM E+G  P+  TYN L+  +            +K  
Sbjct: 404 VYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMAN----------QKMP 453

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +  +++++M    IEP + +F++++  Y  A   ++     + M +KGICP   +Y+ +
Sbjct: 454 EHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVL 513

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           ++ L S G+  +A   L EM+  G+      YN F  ++
Sbjct: 514 IRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAADF 552



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 88/201 (43%), Gaps = 3/201 (1%)

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           +G   D  +++ ++ + ++  Q +  +  L  M  KG+  T+ T++  +K   +    + 
Sbjct: 188 QGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLL-TMETFTIAMKAFAAAKERKK 246

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A  +   M +       ET NC        K    A  L+ ++KE     PNM +Y +L+
Sbjct: 247 AVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKER--FTPNMMTYTVLL 304

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
             +  +  +     IWND+   GL PD+ ++ +++ GL    K  +A + F  M  KG  
Sbjct: 305 NGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPC 364

Query: 253 PQKVTFETLYRGLIQSDMLRT 273
           P   ++  + R   +   + T
Sbjct: 365 PNVRSYTIMIRDFCKQSSMET 385


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 141/285 (49%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++YG CKI + D A+  L EM++ G+ PN  TYN LL  +CRR            I 
Sbjct: 330 YNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRR----------DNIL 379

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++FDEM  RG+ PD+ SFS ++ V +R      +L     M+  GI P    Y+ ++
Sbjct: 380 EAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILI 439

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + DA ++  EM+  G      TYN F      +K    A  L+ +M E G+ 
Sbjct: 440 DGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGM- 498

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+ +++  LI  +     MD    ++  +  + L PD  +Y  LI G C+  +   A +
Sbjct: 499 VPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKE 558

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            + +MI K ++P  +++ T+  G   S +L     L  ++ E+ I
Sbjct: 559 LWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGI 603



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G+CK   +D A      M+   ++P+ VTYN L++G C+   +           
Sbjct: 505 FTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMG---------- 554

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A++++D+M  + I PD  S+  VL+ +  +     +L+  + M EKGI P + T ++++
Sbjct: 555 RAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLI 614

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C  G +  A E L +M+ NG+ P + +YN     Y    +   A  L  +M++ GL 
Sbjct: 615 KGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQ 674

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+ +YN+++  F A  +M    ++   +   G+ PD  +Y+ LI+G   +   KEA +
Sbjct: 675 F-NIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFR 733

Query: 242 YFVEMIEKGLLPQ 254
           +  EM+++GL+P 
Sbjct: 734 FHDEMLQRGLVPD 746



 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 136/267 (50%), Gaps = 11/267 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+ G  +   +D+A    GE++  G+E NV T N+++N +C+          ++   N  
Sbjct: 228 LLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCK----------DRKFENVM 277

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
               +M  +G+  D+ +++ +++ Y R    + +   LN    +G+ P + TY++++  L
Sbjct: 278 FFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGL 337

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G+ + A+++L EM++ G+ P+A TYN    E   R +   A +++ +M   G+ +P+
Sbjct: 338 CKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGV-LPD 396

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + S++ LIG+      +      + +++ SG+ PD   YT+LI G C      +A +   
Sbjct: 397 LVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRD 456

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDML 271
           EM+ +G     VT+ T   GL +  M 
Sbjct: 457 EMLARGCFMDVVTYNTFLNGLCKKKMF 483



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 150/327 (45%), Gaps = 46/327 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G+C+   +  A +   EM+ RG   +VVTYN  LNG+C++          K  
Sbjct: 434 IYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKK----------KMF 483

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIV-------------LHVYSRAHQPQLSLDKLNF--- 104
            +A+ +F+EM  RG+ PD  +F+ +             L+++    +  L  DK+ +   
Sbjct: 484 ADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTL 543

Query: 105 -------------------MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
                              M  K I P   +Y +V+   CS G + +A  L  +M+  G+
Sbjct: 544 IDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGI 603

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P+  T N   K Y    D   A +   +M  +G+ +P+  SYN LI  ++    ++   
Sbjct: 604 RPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGI-IPDSFSYNTLIDGYLKEANLEKAF 662

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            + N+++  GL  ++ +Y ++++G C + K +EA Q   +MIE G+ P   T+ +L  G 
Sbjct: 663 ILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGH 722

Query: 266 IQSDMLRTWRRLKKKLDEESITFGSEF 292
           +  D ++   R   ++ +  +     F
Sbjct: 723 VSQDNMKEAFRFHDEMLQRGLVPDDRF 749



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 84/180 (46%), Gaps = 1/180 (0%)

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           + +++  Y +A + +   +    ++ KG+  ++   + ++  L   G ++ A E+ GE+V
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
           R G+  +  T N         +     M     M+  G+   ++ +YN LI  +     +
Sbjct: 250 RGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGV-FADIVTYNTLINAYCREGLV 308

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   ++ N     G+ P L +Y  +++GLC+  K+  A    +EM++ GL P   T+ TL
Sbjct: 309 EEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTL 368



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 1/204 (0%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           K +R   + F  +R +G+   + + + +L    R     L+ +    +   GI   V T 
Sbjct: 201 KKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTL 260

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + +V  LC   + E+    L +M   GV     TYN     Y        A +L      
Sbjct: 261 NIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSS 320

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G+  P + +YN ++     + + D  +++  ++   GL P+  +Y  L+  +C +    
Sbjct: 321 RGM-EPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNIL 379

Query: 238 EACQYFVEMIEKGLLPQKVTFETL 261
           EA + F EM  +G+LP  V+F +L
Sbjct: 380 EAQEIFDEMSRRGVLPDLVSFSSL 403


>gi|15228788|ref|NP_191813.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122214682|sp|Q3EAF8.1|PP294_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62540, mitochondrial; Flags: Precursor
 gi|332646841|gb|AEE80362.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 142/250 (56%), Gaps = 11/250 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GWC++  +  A R   +MI+ G++P++V +NV+L G+ R  S+  S        
Sbjct: 301 YTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLR--SMKKS-------- 350

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+F  M+ +G  P+V S++I++  + +    + +++  + M + G+ P  A Y+ ++
Sbjct: 351 DAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLI 410

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               +  +++   ELL EM   G  P  +TYN   K    +K      ++Y +M ++ + 
Sbjct: 411 TGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEI- 469

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++H++N+++  +      +M R +W+++   G+ PD +SYT+LI GL  + K +EAC+
Sbjct: 470 EPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACR 529

Query: 242 YFVEMIEKGL 251
           Y  EM++KG+
Sbjct: 530 YLEEMLDKGM 539



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 8/232 (3%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH---QPQLSLDKLNFMKEKGICPTV 114
           K  + A  +F+ M+    +  V + + +L    RA    + Q+  DKL   KE+   P +
Sbjct: 243 KERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKL---KER-FTPNM 298

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            TY+ ++   C    + +A  +  +M+ +G+ P    +N   +        + A+KL+  
Sbjct: 299 MTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHV 358

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           MK  G C PN+ SY I+I  F   + M+   E ++D+  SGL PD   YT LI G   ++
Sbjct: 359 MKSKGPC-PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQK 417

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           K     +   EM EKG  P   T+  L + +    M     R+  K+ +  I
Sbjct: 418 KLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEI 469



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 93/214 (43%), Gaps = 11/214 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I  +CK + ++ A  +  +M++ G++P+   Y  L+ G             +K + 
Sbjct: 371 YTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGT----------QKKLD 420

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++  EM+ +G  PD  +++ ++ + +    P+      N M +  I P++ T++ ++
Sbjct: 421 TVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIM 480

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K        E    +  EM++ G+CP   +Y    +       +  A +   +M + G+ 
Sbjct: 481 KSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMK 540

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            P +  YN     F    + ++  E+    K SG
Sbjct: 541 TP-LIDYNKFAADFHRGGQPEIFEELAQRAKFSG 573



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 10/159 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G+    ++D     L EM E+G  P+  TYN L+  +            +K  
Sbjct: 405 VYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMAN----------QKMP 454

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +  +++++M    IEP + +F++++  Y  A   ++     + M +KGICP   +Y+ +
Sbjct: 455 EHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVL 514

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           ++ L S G+  +A   L EM+  G+      YN F  ++
Sbjct: 515 IRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAADF 553



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 87/201 (43%), Gaps = 3/201 (1%)

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           +G      +++ ++ + ++  Q +  +  L  M  KG+  T+ T++  +K   +    + 
Sbjct: 189 QGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLL-TMETFTIAMKAFAAAKERKK 247

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A  +   M +       ET NC        K    A  L+ ++KE     PNM +Y +L+
Sbjct: 248 AVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKER--FTPNMMTYTVLL 305

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
             +  +  +     IWND+   GL PD+ ++ +++ GL    K  +A + F  M  KG  
Sbjct: 306 NGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPC 365

Query: 253 PQKVTFETLYRGLIQSDMLRT 273
           P   ++  + R   +   + T
Sbjct: 366 PNVRSYTIMIRDFCKQSSMET 386


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 148/280 (52%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G CK+ +   A     +M+ RG +P+V TY  ++NG+C+           +T+ 
Sbjct: 195 FNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCK---------IGETVA 245

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F +M   G +PDV ++S ++    +  +   +LD  ++MK KGI P + TY+S++
Sbjct: 246 -AAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLI 304

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC+  R  +A  +L EM+   + P+  T++     +    +   A  + + M E G+ 
Sbjct: 305 QGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGV- 363

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y+ L+  +     +   R++++ +   G  PD+ SY +LI+G C+ ++  EA Q
Sbjct: 364 EPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQ 423

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            F EMI +GL P  V++ TL  GL Q   LR    L K +
Sbjct: 424 LFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNM 463



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 140/266 (52%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ LI  +CK   +  A   L  M E GVEPNVVTY+ L+NG   +A           + 
Sbjct: 335 FSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAE----------VV 384

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+FD M  +G +PDV S++I+++ Y +A +   +    N M  +G+ P + +Y++++
Sbjct: 385 EARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLI 444

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+ +A +L   M+ NG  P   TY+     +  +     A +L+R M+   L 
Sbjct: 445 DGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYL- 503

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PNM  YNILI        +   R++++++   GL P++  YT +I+GLC++    EA +
Sbjct: 504 KPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALE 563

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
            F  M E G  P + ++  + RG +Q
Sbjct: 564 AFRNMEEDGCPPNEFSYNVIIRGFLQ 589



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 136/283 (48%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G C  +R   A   L EM+   + PN+VT+++L+N  C+          E  + 
Sbjct: 300 YNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCK----------EGNVF 349

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V   M   G+EP+V ++S +++ YS   +   +    + M  KG  P V +Y+ ++
Sbjct: 350 EARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILI 409

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI +A++L  EM+  G+ P   +YN              A  L++ M  +G  
Sbjct: 410 NGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNG-N 468

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y+IL+  F     +     ++  ++ + L P++  Y +LI  +C+ +  KEA +
Sbjct: 469 LPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARK 528

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F E+  +GL P    + T+  GL +  +L       + ++E+
Sbjct: 529 LFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEED 571



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 10/247 (4%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           ID A  +   M+ R   P ++ +N LL+ + +    H +            +  +M + G
Sbjct: 102 IDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDA---------VISLSKQMELAG 152

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           + PD  +  ++++ + +  +  L    L  + + G+  T+ T+++++  LC  G+   A 
Sbjct: 153 LSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAV 212

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           EL  +MV  G  P   TY           +   A  L+R+M E G C P++ +Y+ +I  
Sbjct: 213 ELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAG-CQPDVVTYSTIIDS 271

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                R++   +I++ +K  G+ P++ +Y  LI GLC   +W+EA     EM+   ++P 
Sbjct: 272 LCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPN 331

Query: 255 KVTFETL 261
            VTF  L
Sbjct: 332 IVTFSLL 338



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 45/214 (21%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CK  RI  A++   EMI +G+ P++V+YN L++G+C+   L          R
Sbjct: 405 YNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRL----------R 454

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYS------------RAHQ-----PQL------- 97
            A  +F  M   G  PD+ ++SI+L  +             RA Q     P +       
Sbjct: 455 EAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILI 514

Query: 98  -SLDKLNFMKE----------KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
            ++ K   +KE          +G+ P V  Y++++  LC  G +++A E    M  +G  
Sbjct: 515 DAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCP 574

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           P+  +YN   + +   KD + A++L  +M+E G 
Sbjct: 575 PNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGF 608



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 91/228 (39%), Gaps = 47/228 (20%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA---HQPQLSLDKLNFMKEKGICPTV 114
           + I +A   F+ M  R   P +  F+ +L    +    H   +SL K   M+  G+ P  
Sbjct: 100 RNIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQ--MELAGLSPDT 157

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            T   ++ C     R++    +L ++++ G+  +  T+N                     
Sbjct: 158 YTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLI------------------ 199

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
              +GLC                + +     E+++D+   G  PD+ +YT +I+GLC+  
Sbjct: 200 ---NGLC---------------KVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIG 241

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           +   A   F +M E G  P  VT+ T+   L +       RR+ + LD
Sbjct: 242 ETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKD------RRVNEALD 283



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 10/118 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY  LI   CK   +  A +   E+  +G++PNV  Y  ++NG+C+          E  +
Sbjct: 509 MYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCK----------EGLL 558

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
             A + F  M   G  P+  S+++++  + +      ++  +  M+EKG    VAT +
Sbjct: 559 DEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVADVATTA 616


>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
 gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 140/282 (49%), Gaps = 11/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GW +   +        EM + G EP+VVTY +L+N  C+      S R++  I 
Sbjct: 146 YTILLEGWGQEKNLSRLMEVYNEMKDEGFEPDVVTYGILINAHCK------SRRYDDAI- 198

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++F EM  +  +P    +  +++      +   +L+     K  G  P   TY++VV
Sbjct: 199 ---ELFHEMEAKNCKPSPHIYCTLINGLGAEKRLSEALEFFELSKASGFVPEAPTYNAVV 255

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R++D +  + EM + GV PSA TY+              A  ++++M  +G C
Sbjct: 256 GAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHHLIRAGKTKIAYSVFQKMSCEG-C 314

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y I++ MF   +R+DM  ++W+ +K  G+ P +  ++ LI+ LC + K  EAC 
Sbjct: 315 QPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPVMHMFSTLINSLCHESKLDEACM 374

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           YF EM++ G+ P    F  L + L+      T    ++KLD+
Sbjct: 375 YFQEMLDVGIRPPAQLFSNLKQNLLDEGKKDTVVVFERKLDK 416



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 116/256 (45%), Gaps = 15/256 (5%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G++      N LL+ +C+           + +  A+ VFD+M  RG   D+ S++I+L  
Sbjct: 103 GLKIESSDVNRLLDTLCK----------SRQVERAQLVFDKMNKRGFVADIKSYTILLEG 152

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           + +       ++  N MK++G  P V TY  ++   C   R +DA EL  EM      PS
Sbjct: 153 WGQEKNLSRLMEVYNEMKDEGFEPDVVTYGILINAHCKSRRYDDAIELFHEMEAKNCKPS 212

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
              Y          K  + A++ +   K  G  VP   +YN ++G +    RMD V+   
Sbjct: 213 PHIYCTLINGLGAEKRLSEALEFFELSKASGF-VPEAPTYNAVVGAYCWSERMDDVQRTI 271

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           ++++  G+GP   +Y +++H L    K K A   F +M  +G  P   T+E + R     
Sbjct: 272 DEMRKGGVGPSARTYDIILHHLIRAGKTKIAYSVFQKMSCEGCQPSVSTYEIIVRMFCNE 331

Query: 269 D----MLRTWRRLKKK 280
           D     ++ W ++K K
Sbjct: 332 DRVDMAIKVWDQMKAK 347



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 99/193 (51%), Gaps = 2/193 (1%)

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
           +M+ +G+  +  +F+++   Y+RA + + ++D    M++ G+    +  + ++  LC   
Sbjct: 64  DMKQKGL-LNKETFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTLCKSR 122

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           ++E A+ +  +M + G     ++Y    + +   K+ +  M++Y +MK++G   P++ +Y
Sbjct: 123 QVERAQLVFDKMNKRGFVADIKSYTILLEGWGQEKNLSRLMEVYNEMKDEGF-EPDVVTY 181

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
            ILI       R D   E++++++     P    Y  LI+GL  +++  EA ++F     
Sbjct: 182 GILINAHCKSRRYDDAIELFHEMEAKNCKPSPHIYCTLINGLGAEKRLSEALEFFELSKA 241

Query: 249 KGLLPQKVTFETL 261
            G +P+  T+  +
Sbjct: 242 SGFVPEAPTYNAV 254


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 141/280 (50%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G CK      A     +M+ RG +P+V TY  ++NG+C+               
Sbjct: 164 FTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAA--------- 214

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +M   G +PDV ++S ++    +      +LD  ++MK KGI PTV +Y+S++
Sbjct: 215 -AAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLI 273

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LCS  R ++A  +L EM    + P   T++     +    +   A  + + M E G+ 
Sbjct: 274 QGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGV- 332

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN L+  +     +   R++++ +   G  PD+ SY++LI+G C  ++  EA Q
Sbjct: 333 EPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQ 392

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            F EMI +GL P  V++ TL     Q   LR  R L K +
Sbjct: 393 LFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDM 432



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 141/280 (50%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G CK+     A   + +M E G +P+VVTY+ L++ +C+          ++ + 
Sbjct: 199 YTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCK----------DRLVN 248

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F  M+ +GI P V S++ ++       + + +   LN M    I P + T+S ++
Sbjct: 249 EALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLI 308

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + +A+ +L  M   GV P+  TYN     Y  + +   A KL+  M   G C
Sbjct: 309 DIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRG-C 367

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SY+ILI  +  + R+D  ++++N++   GL P+  SYT LIH  C+  K +EA +
Sbjct: 368 KPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARE 427

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            F +M   G LP   T+  L  G  +   L    RL + +
Sbjct: 428 LFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAM 467



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 138/266 (51%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ LI  +CK   +  A+  L  M E GVEPNV+TYN L++G             +  + 
Sbjct: 304 FSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGY----------SLQMEVV 353

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+FD M  RG +PDV S+SI+++ Y    +   +    N M  +G+ P   +Y++++
Sbjct: 354 EARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLI 413

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++ +A EL  +M  NG  P   TY+   + +  +     A +L+R M+   L 
Sbjct: 414 HAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYL- 472

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+  Y ILI        ++  R++++++   GL PD+  YT +I+GLC++    EA +
Sbjct: 473 KPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALE 532

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
            F +M E G  P + ++  + RG +Q
Sbjct: 533 AFRKMEEDGCPPNEFSYNVIIRGFLQ 558



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 139/283 (49%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI G C  +R   A   L EM    + P++VT+++L++  C+          E  + 
Sbjct: 269 YTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCK----------EGNVL 318

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ V   M   G+EP+V +++ ++H YS   +   +    + M  +G  P V +YS ++
Sbjct: 319 EAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILI 378

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI++A++L  EM+  G+ P+  +Y      +        A +L++ M  +G  
Sbjct: 379 NGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGY- 437

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y++L+  F     +     ++  ++G+ L P+L  YT+LI  +C+      A +
Sbjct: 438 LPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARK 497

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F E+   GL P    + T+  GL +  +L       +K++E+
Sbjct: 498 LFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEED 540



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 10/247 (4%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           ID A      M+ R   P ++ +N LL+ + R       + ++  I  ++    +M + G
Sbjct: 71  IDDALASFNHMLHRKPLPCIIQFNKLLSAIVRM-----RQYYDAVISLSK----QMELAG 121

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           + P+  + +I+++ +       L    L  + + G+ PT+ T+++++  LC  G    A 
Sbjct: 122 LSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQAL 181

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           EL  +MV  G  P   TY           +   A  L ++M E G C P++ +Y+ LI  
Sbjct: 182 ELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVG-CQPDVVTYSTLIDS 240

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                 ++   +I++ +K  G+ P + SYT LI GLC   +WKEA     EM    ++P 
Sbjct: 241 LCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPD 300

Query: 255 KVTFETL 261
            VTF  L
Sbjct: 301 IVTFSLL 307



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 45/214 (21%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G+C + RID A++   EMI +G+ PN V+Y  L++  C+   L          R
Sbjct: 374 YSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKL----------R 423

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYS------------RAHQ-----PQLSL----- 99
            A ++F +M   G  PD+ ++S++L  +             RA Q     P L +     
Sbjct: 424 EARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILI 483

Query: 100 ------DKLNFMKE-------KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                   LN  ++        G+ P V  Y++++  LC  G +++A E   +M  +G  
Sbjct: 484 DSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCP 543

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           P+  +YN   + +   KD + A++L  +M++ G 
Sbjct: 544 PNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGF 577



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 2/155 (1%)

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKE-YRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           I+DA      M+     P    +N       R R+  +  + L +QM+  GL  PN  + 
Sbjct: 71  IDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLS-PNTCTL 129

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           NILI  F  +  +D+   +   V   GL P + ++T LI+GLC+  ++ +A + F +M+ 
Sbjct: 130 NILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVA 189

Query: 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           +G  P   T+ T+  GL +         L KK+ E
Sbjct: 190 RGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGE 224



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 41/211 (19%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ---PQLSLDKLNFMKEKGICPTV 114
           + I +A   F+ M  R   P +  F+ +L    R  Q     +SL K   M+  G+ P  
Sbjct: 69  RNIDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQ--MELAGLSPNT 126

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            T + ++ C C    ++    +L ++++ G+ P+  T+                      
Sbjct: 127 CTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLI------------------ 168

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
              +GLC     +  +               E+++D+   G  PD+ +YT +I+GLC+  
Sbjct: 169 ---NGLCKAGEFAQAL---------------ELFDDMVARGCQPDVYTYTTIINGLCKMG 210

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +   A     +M E G  P  VT+ TL   L
Sbjct: 211 ETAAAAGLIKKMGEVGCQPDVVTYSTLIDSL 241



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 10/109 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT LI   CK   ++ A +   E+   G++P+V  Y  ++NG+C+          E  +
Sbjct: 478 MYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCK----------EGLL 527

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG 109
             A + F +M   G  P+  S+++++  + +      ++  +  M++KG
Sbjct: 528 DEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKG 576


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 146/283 (51%), Gaps = 11/283 (3%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           SL+ G  K+  +D+A     E++  GV+ NV T N+++N +C+           + I N 
Sbjct: 328 SLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCK----------NQKIENT 377

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
           +    +M  +G+ PDV +++ +++ Y R    + + + ++ M  KG+ P V TY++++  
Sbjct: 378 KSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIING 437

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC  G+   A+ +L EM++ G+ P   TYN    E     +   A +++ +M   G+ VP
Sbjct: 438 LCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGV-VP 496

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++ S++ LIG+      +D   + + D+K +GL PD   YT+LI G C      EA +  
Sbjct: 497 DLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVR 556

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            EM+E+G     VT+ T+  GL +  ML     L  ++ E  +
Sbjct: 557 DEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGV 599



 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 137/298 (45%), Gaps = 46/298 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK  +   A+  L EM++ G+ P+  TYN+LL   CR  ++           
Sbjct: 431 YNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMM---------- 480

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP--------- 112
           +AE++FDEM  +G+ PD+ SFS ++ + S+      +L     MK  G+ P         
Sbjct: 481 DAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILI 540

Query: 113 --------------------------TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                                      V TY++++  LC    + +A+EL  EM   GV 
Sbjct: 541 GGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVF 600

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P   T+      Y    + N A+ L+  M +  L  P++ +YN LI  F   + M+ V E
Sbjct: 601 PDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNL-KPDVVTYNTLIDGFCKGSEMEKVNE 659

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           +WND+    + P+  SY +LI+G C      EA + + EM+EKG     +T  T+ +G
Sbjct: 660 LWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKG 717



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 148/315 (46%), Gaps = 44/315 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G+C+   +  A +   EM+E+G   +VVTYN +LNG+C+          EK +
Sbjct: 535 IYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCK----------EKML 584

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++F EM  RG+ PD  +F+ +++ Y +      ++     M ++ + P V TY+++
Sbjct: 585 SEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTL 644

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C    +E   EL  +M+   + P+  +Y      Y      + A +L+ +M E G 
Sbjct: 645 IDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGF 704

Query: 181 ----------------------------------CVPNMHSYNILIGMFMALNRMDMVRE 206
                                              VP+  +YN LI  F+    MD    
Sbjct: 705 EATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFA 764

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           + N ++ SGL PD+ +Y ++++G   + + +EA    ++MIE+G+ P + T+ +L  G +
Sbjct: 765 LVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHV 824

Query: 267 QSDMLRTWRRLKKKL 281
             + L+   R+  ++
Sbjct: 825 TQNNLKEAFRVHDEM 839



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 127/252 (50%), Gaps = 11/252 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G+ K   ++ A      MI+R ++P+VVTYN L++G C+ + +           
Sbjct: 606 FTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEME---------- 655

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +++++M  R I P+  S+ I+++ Y        +    + M EKG   T+ T +++V
Sbjct: 656 KVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIV 715

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C  G    A+E L  M+  G+ P   TYN     +   ++ + A  L  +M+  GL 
Sbjct: 716 KGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGL- 774

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +YN+++  F    RM     I   +   G+ PD  +YT LI+G   +   KEA +
Sbjct: 775 LPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFR 834

Query: 242 YFVEMIEKGLLP 253
              EM+++G +P
Sbjct: 835 VHDEMLQRGFVP 846



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 97/205 (47%), Gaps = 1/205 (0%)

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           F +++  Y +A + +   +    +K KG+C ++   +S++  L   G ++ A E+  E+V
Sbjct: 291 FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 350

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
           R+GV  +  T N         +           M+E G+  P++ +YN LI  +     +
Sbjct: 351 RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGV-FPDVVTYNTLINAYCRQGLL 409

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   E+ + + G GL P + +Y  +I+GLC+  K+  A     EM++ G+ P   T+  L
Sbjct: 410 EEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNIL 469

Query: 262 YRGLIQSDMLRTWRRLKKKLDEESI 286
                ++D +    R+  ++  + +
Sbjct: 470 LVECCRNDNMMDAERIFDEMPSQGV 494



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 88/182 (48%), Gaps = 22/182 (12%)

Query: 111 CP----TVATYSSVVKCLCSCGRIEDAEELLGEMVRN----------------GVCPSAE 150
           CP    ++ ++S+++  L    R+ DA+ ++  MVR                 G C S  
Sbjct: 229 CPNFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNP 288

Query: 151 -TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
             ++   + Y   +      + +R +K  GLCV ++++ N L+G  + +  +D+  EI+ 
Sbjct: 289 LVFDLLVRTYVQARKLREGCEAFRVLKSKGLCV-SINACNSLLGGLVKVGWVDLAWEIYQ 347

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           +V  SG+  ++ +  ++I+ LC+ QK +    +  +M EKG+ P  VT+ TL     +  
Sbjct: 348 EVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQG 407

Query: 270 ML 271
           +L
Sbjct: 408 LL 409



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 93/212 (43%), Gaps = 2/212 (0%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           + +R   + F  ++ +G+   + + + +L    +     L+ +    +   G+   V T 
Sbjct: 302 RKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTL 361

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + ++  LC   +IE+ +  L +M   GV P   TYN     Y  +     A +L   M  
Sbjct: 362 NIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSG 421

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            GL  P + +YN +I       +    + + +++   G+ PD  +Y +L+   C      
Sbjct: 422 KGL-KPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMM 480

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           +A + F EM  +G++P  V+F  L  GL+  +
Sbjct: 481 DAERIFDEMPSQGVVPDLVSFSALI-GLLSKN 511



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 25/102 (24%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y +LI G+ K   +D A   + +M   G+ P+V+TYNV+LNG  R+  +  +E       
Sbjct: 746 YNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMI 805

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPD 78
                               +  ++ A +V DEM  RG  PD
Sbjct: 806 ERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 847


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 154/296 (52%), Gaps = 16/296 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI G+CK+ R++ A  ++ + I  G EP+ +TYN  +NG+C+             + +A 
Sbjct: 165 LINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQN----------DHVGHAL 214

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           KV D M   G +PDV +++IV++   +  Q + +   LN M ++G  P + T+++++  L
Sbjct: 215 KVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAAL 274

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C+  R+E+A +L  ++   GV P   T+N          D + A++L+ +MK  G C P+
Sbjct: 275 CTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG-CTPD 333

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
             +YN LI    +L ++    ++  D++ +G      +Y  +I GLC+K + +EA + F 
Sbjct: 334 EVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFD 393

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE-----SITFGSEFQNY 295
           +M  +G+    +TF TL  GL +   +     L  ++  E     +IT+ S   +Y
Sbjct: 394 QMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHY 449



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 127/260 (48%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y + + G C+ + +  A + +  M++ G +P+V TYN+++N +C+   L           
Sbjct: 197 YNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLE---------- 246

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ + ++M  RG  PD+T+F+ ++      ++ + +LD    +  KG+ P V T++ ++
Sbjct: 247 EAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILI 306

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G    A  L  EM  +G  P   TYN              A+ L + M+  G C
Sbjct: 307 NALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG-C 365

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  +YN +I       R++   E+++ +   G+  +  ++  LI GLC+ +K  +A +
Sbjct: 366 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFE 425

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              +MI +GL P  +T+ ++
Sbjct: 426 LINQMISEGLQPNNITYNSI 445



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 138/283 (48%), Gaps = 13/283 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI   C  NR++ A     ++  +GV P+V T+N+L+N +C+    H + R      
Sbjct: 267 FNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALR------ 320

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP-TVATYSSV 120
               +F+EM+  G  PD  +++ ++       +   +LD L  M+  G CP +  TY+++
Sbjct: 321 ----LFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG-CPRSTITYNTI 375

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   RIE+AEE+  +M   G+  +A T+N         K  + A +L  QM  +GL
Sbjct: 376 IDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGL 435

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  +YN ++  +     +    +I   +  +G   D+ +Y  LI+GLC+  + + A 
Sbjct: 436 -QPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVAL 494

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           +    M  KG+ P    +  + + L + + +R    L +++ E
Sbjct: 495 KVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAE 537



 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 123/265 (46%), Gaps = 11/265 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L+    + +++ + E    EM  RG++P+VVT+N L+  +CR             +
Sbjct: 56  VYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCR----------AHQV 105

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R A  + +EM  RG+ PD T+F+ ++  +      + +L     M E G   T  T + +
Sbjct: 106 RTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVL 165

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  GR+EDA   + + + +G  P   TYN F            A+K+   M ++G 
Sbjct: 166 INGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEG- 224

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +YNI++       +++  + I N +   G  PD+ ++  LI  LC   + +EA 
Sbjct: 225 HDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEAL 284

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
               ++  KG+ P   TF  L   L
Sbjct: 285 DLARQVTVKGVSPDVYTFNILINAL 309



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 129/286 (45%), Gaps = 51/286 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK  RI+ AE    +M  +G+  N +T+N L++G+C+          +K I 
Sbjct: 372 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCK----------DKKID 421

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++ ++M   G++P+  +++ +L  Y +    + + D L  M   G    V TY +++
Sbjct: 422 DAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLI 481

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR + A ++L  M   G+ P+ + YN   +    R +   A+ L+R+M E    
Sbjct: 482 NGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAE---- 537

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE-KQKWKEAC 240
                                            G  PD  +Y ++  GLC      KEA 
Sbjct: 538 --------------------------------VGEPPDALTYKIVFRGLCRGGGPIKEAF 565

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDM----LRTWRRLKKKLD 282
            + +EM++KG +P+  +F  L  GL+   M    +R    + +K+D
Sbjct: 566 DFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEKVD 611



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 118/254 (46%), Gaps = 17/254 (6%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G++ + V YN LLN +   + +          +  E V+ EM  RGI+PDV +F+ ++  
Sbjct: 49  GIQADTVVYNHLLNVLVEGSKM----------KLLESVYSEMGARGIKPDVVTFNTLMKA 98

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
             RAHQ + ++  L  M  +G+ P   T++++++     G IE A  +   M+  G   +
Sbjct: 99  LCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSAT 158

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             T N     Y        A+   +Q   DG   P+  +YN  +      + +    ++ 
Sbjct: 159 KVTVNVLINGYCKLGRVEDALGYIQQEIADGF-EPDQITYNTFVNGLCQNDHVGHALKVM 217

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           + +   G  PD+ +Y ++++ LC+  + +EA     +M+++G LP   TF TL   L   
Sbjct: 218 DVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALC-- 275

Query: 269 DMLRTWRRLKKKLD 282
               T  RL++ LD
Sbjct: 276 ----TGNRLEEALD 285



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 72/149 (48%), Gaps = 1/149 (0%)

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL-YRQMKEDGLCVPNMHSYNILIGM 194
           L+ EM R G        + F   Y G++  + A+ L   Q++       +   YN L+ +
Sbjct: 4   LVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNV 63

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
            +  ++M ++  +++++   G+ PD+ ++  L+  LC   + + A     EM  +G+ P 
Sbjct: 64  LVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPD 123

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           + TF TL +G ++   +    R+K ++ E
Sbjct: 124 ETTFTTLMQGFVEEGSIEAALRVKARMLE 152


>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 146/282 (51%), Gaps = 13/282 (4%)

Query: 1    MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
            +YTSL++GWC+   I  AER  GEM   G+ PNV TY+++++ +CR             I
Sbjct: 1284 VYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQ----------I 1333

Query: 61   RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              A  VF EM   G +P+  +F+ ++ V+ +A + +  L   N MK  G  P   TY+ +
Sbjct: 1334 TRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFL 1393

Query: 121  VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
            ++  C    +E+A ++L   V+ G   +A ++N  F       D N A +++ +MK D  
Sbjct: 1394 IESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMK-DLK 1451

Query: 181  CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            C PN  +YNIL+ MF      DMV ++  ++  + + P+ ++Y +LI   C    W  A 
Sbjct: 1452 CRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAY 1511

Query: 241  QYFVEMI-EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
             +F EMI EK L P    +E + + L ++  L+    L +K+
Sbjct: 1512 SFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKM 1553



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 127/285 (44%), Gaps = 13/285 (4%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            +T L+  + K      A      M + G +P+ + ++V+++ + ++          +   
Sbjct: 1216 FTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKK----------RRAI 1265

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             A+  FD ++ R  EPDV  ++ ++H + RA     +      MK  GI P V TYS V+
Sbjct: 1266 EAQSFFDSLKDR-FEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVI 1324

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              LC  G+I  A ++  EM+  G  P+A T+N   + +         +++Y QMK  G C
Sbjct: 1325 DALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLG-C 1383

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             P+  +YN LI      + ++   +I N VK  G   +  S+  +   + +      A +
Sbjct: 1384 PPDAITYNFLIESHCRDDNLEEAVKILNSVK-KGCNLNASSFNPIFGCISKLGDVNSAHR 1442

Query: 242  YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             F +M +    P  VT+  L R            +L+K++DE  I
Sbjct: 1443 MFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEI 1487



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 116/257 (45%), Gaps = 23/257 (8%)

Query: 11   KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKV--FD 68
            K+ + D+A + +  M  R VE  V T+ +L+             R+ K    AE V  F+
Sbjct: 1190 KVRQFDLAWQLIDLMKTRNVEIPVETFTILV------------RRYVKAGLAAEAVHAFN 1237

Query: 69   EMRVRGIEPDVTSFSIVLHVYS---RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
             M   G +PD  +FS+V+   S   RA + Q   D L    E    P V  Y+S+V   C
Sbjct: 1238 RMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFE----PDVVVYTSLVHGWC 1293

Query: 126  SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
              G I +AE + GEM   G+ P+  TY+              A  ++ +M + G C PN 
Sbjct: 1294 RAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVG-CDPNA 1352

Query: 186  HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
             ++N L+ + +   R + V +++N +K  G  PD  +Y  LI   C     +EA +  + 
Sbjct: 1353 ITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVK-ILN 1411

Query: 246  MIEKGLLPQKVTFETLY 262
             ++KG      +F  ++
Sbjct: 1412 SVKKGCNLNASSFNPIF 1428



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 82/201 (40%), Gaps = 37/201 (18%)

Query: 63   AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
            A ++ D M+ R +E  V +F+I++  Y +A     ++   N M++ G  P    +S V+ 
Sbjct: 1197 AWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVIS 1256

Query: 123  CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             L    R  +A+                    FF   + R +                  
Sbjct: 1257 SLSKKRRAIEAQS-------------------FFDSLKDRFE------------------ 1279

Query: 183  PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
            P++  Y  L+  +     +     ++ ++K +G+ P++ +Y+++I  LC   +   A   
Sbjct: 1280 PDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHDV 1339

Query: 243  FVEMIEKGLLPQKVTFETLYR 263
            F EMI+ G  P  +TF  L R
Sbjct: 1340 FSEMIDVGCDPNAITFNNLMR 1360



 Score = 43.9 bits (102), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 11/135 (8%)

Query: 11   KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
            K+  ++ A R   +M +    PN VTYN+L+     +          K+     K+  EM
Sbjct: 1433 KLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADK----------KSTDMVLKLRKEM 1482

Query: 71   RVRGIEPDVTSFSIVLHVY-SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
                IEP+  ++ +++  +    H           ++EK + P++  Y  V++ L   G+
Sbjct: 1483 DENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQ 1542

Query: 130  IEDAEELLGEMVRNG 144
            ++  EEL+ +MV  G
Sbjct: 1543 LKKHEELVEKMVNRG 1557


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 146/299 (48%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I  +CK+ RID A + L  M   G+EPN++TYN+++NG+CR        R E+T  
Sbjct: 241 YNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVG------RIEET-- 292

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               V  EM  +G  PD  +++ +++ Y +      +L   + M   G+ P V TY+S++
Sbjct: 293 --SGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLI 350

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G +  A E   +M   G+ P+  TY      +  +   + A +++ +M   G  
Sbjct: 351 NTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGF- 409

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +YN L+       RM+    +   ++G GL PD+ SY+ +I G C  Q+   A Q
Sbjct: 410 PPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQ 469

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT-----WRRLKKKLDEESITFGSEFQNY 295
              EM+EKG+ P  +T+ +L +GL +   L          L K L  +  T+ S    Y
Sbjct: 470 MNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGY 528



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 137/306 (44%), Gaps = 36/306 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI G+ +   +D A R   EMI  G  P +VTYN LLNG C       S R E+ I 
Sbjct: 381 YTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHC------VSGRMEEAI- 433

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +   M  +G+ PDV S+S ++  + R  +   +      M EKG+ P   TYSS++
Sbjct: 434 ---GLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLI 490

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC   R+ +A +L  EM+   + P   TY      Y    D N A+ L+ +M + G  
Sbjct: 491 QGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGF- 549

Query: 182 VPNMHSYNILIGMFMALNRMDMVRE--------IWNDVKGSGLGPD----------LDSY 223
           +P+  +YN+LI     LN+    RE         +++   +G+  D            S 
Sbjct: 550 LPDTVTYNVLIN---GLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSV 606

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
             LI G C K    EA Q F  MI++   P +  +  +  G  +   +    +L K    
Sbjct: 607 VALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYK---- 662

Query: 284 ESITFG 289
           E + FG
Sbjct: 663 EMVDFG 668



 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 119/247 (48%), Gaps = 11/247 (4%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           AE+   EMI  GV  NV +YN+L+ G C   +L    RF          F+EM      P
Sbjct: 187 AEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRF----------FEEMERNRCLP 236

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           +V +++ V+  Y +  +   +   L  M  +G+ P + TY+ V+  LC  GRIE+   +L
Sbjct: 237 NVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVL 296

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            EM R G  P   TYN     Y    + + A+ L+ +M  +GL  P++ +Y  LI     
Sbjct: 297 AEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGL-PPDVVTYTSLINTMCK 355

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
              ++   E ++ +   GL P+  +YT LI+G  +K    EA + + EMI  G  P  VT
Sbjct: 356 AGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVT 415

Query: 258 FETLYRG 264
           +  L  G
Sbjct: 416 YNALLNG 422



 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 135/292 (46%), Gaps = 27/292 (9%)

Query: 12  INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMR 71
           +N +D+A+         G  P V++YN +L+ + R           K +  AEKV+ EM 
Sbjct: 152 LNIVDLAKL-------NGFMPGVLSYNAILDSIVR---------CRKPVIFAEKVYREMI 195

Query: 72  VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIE 131
             G+  +V S++I++  +  A   ++ L     M+     P V TY++V+   C   RI+
Sbjct: 196 ASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRID 255

Query: 132 DAEELLGEMVRNGVCPSAETYNCFFKEY--RGR-KDANGAMKLYRQMKEDGLCVPNMHSY 188
           +A +LL  M   G+ P+  TYN         GR ++ +G +    +M   G   P+  +Y
Sbjct: 256 EAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLA---EMDRKGF-APDGVTY 311

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N L+  +  +        + +++  +GL PD+ +YT LI+ +C+      A ++F +M  
Sbjct: 312 NTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHV 371

Query: 249 KGLLPQKVTFETLYRGLIQSDML----RTWRRLKKKLDEESITFGSEFQNYH 296
           +GL P  VT+ +L  G  Q   +    R W  + +     +I   +   N H
Sbjct: 372 RGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGH 423



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 103/203 (50%), Gaps = 13/203 (6%)

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR-IEDAEELLGEM 140
           F +V+   S  +  + +L+ ++  K  G  P V +Y++++  +  C + +  AE++  EM
Sbjct: 135 FDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYREM 194

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
           + +GV  +  +YN   + +    +    ++ + +M E   C+PN+ +YN +IG +  L R
Sbjct: 195 IASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEM-ERNRCLPNVVTYNTVIGAYCKLKR 253

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           +D   ++   +   GL P+L +Y M+I+GLC   + +E      EM  KG  P  VT+ T
Sbjct: 254 IDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNT 313

Query: 261 LYRG-----------LIQSDMLR 272
           L  G           ++ S+MLR
Sbjct: 314 LVNGYCKVGNFHQALVLHSEMLR 336


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 141/285 (49%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++YG CKI + D A+  L EM++ G+ PN  TYN LL  +CRR            I 
Sbjct: 330 YNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRR----------DNIL 379

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++FDEM  RG+ PD+ SFS ++ V +R      +L     M+  GI P    Y+ ++
Sbjct: 380 EAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILI 439

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + DA ++  EM+  G      TYN F      +K    A  L+ +M E G+ 
Sbjct: 440 DGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGM- 498

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+ +++  LI  +     MD    ++  +  + L PD  +Y  LI G C+  +   A +
Sbjct: 499 VPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKE 558

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            + +MI K ++P  +++ T+  G   S +L     L  ++ E+ I
Sbjct: 559 LWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGI 603



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G+CK   +D A      M+   ++P+ VTYN L++G C+   +           
Sbjct: 505 FTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMG---------- 554

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A++++D+M  + I PD  S+  VL+ +  +     +L+  + M EKGI P + T ++++
Sbjct: 555 RAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLI 614

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C  G +  A E L +M+ NG+ P + +YN     Y    +   A  L  +M++ GL 
Sbjct: 615 KGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQ 674

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+ +YN+++  F A  +M    ++   +   G+ PD  +Y+ LI+G   +   KEA +
Sbjct: 675 F-NIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFR 733

Query: 242 YFVEMIEKGLLPQ 254
           +  EM+++GL+P 
Sbjct: 734 FHDEMLQRGLVPD 746



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 136/267 (50%), Gaps = 11/267 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+ G  +   +D+A    GE++  G+E NV T N+++N +C+          ++   N  
Sbjct: 228 LLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCK----------DRKFENVM 277

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
               +M  +G+  D+ +++ +++ Y R    + +   LN    +G+ P + TY++++  L
Sbjct: 278 FFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGL 337

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G+ + A+++L EM++ G+ P+A TYN    E   R +   A +++ +M   G+ +P+
Sbjct: 338 CKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGV-LPD 396

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + S++ LIG+      +      + +++ SG+ PD   YT+LI G C      +A +   
Sbjct: 397 LVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRD 456

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDML 271
           EM+ +G     VT+ T   GL +  M 
Sbjct: 457 EMLARGCFMDVVTYNTFLNGLCKKKMF 483



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 150/327 (45%), Gaps = 46/327 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G+C+   +  A +   EM+ RG   +VVTYN  LNG+C++          K  
Sbjct: 434 IYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKK----------KMF 483

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIV-------------LHVYSRAHQPQLSLDKLNF--- 104
            +A+ +F+EM  RG+ PD  +F+ +             L+++    +  L  DK+ +   
Sbjct: 484 ADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTL 543

Query: 105 -------------------MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
                              M  K I P   +Y +V+   CS G + +A  L  +M+  G+
Sbjct: 544 IDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGI 603

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P+  T N   K Y    D   A +   +M  +G+ +P+  SYN LI  ++    ++   
Sbjct: 604 RPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGI-IPDSFSYNTLIDGYLKEANLEKAF 662

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            + N+++  GL  ++ +Y ++++G C + K +EA Q   +MIE G+ P   T+ +L  G 
Sbjct: 663 ILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGH 722

Query: 266 IQSDMLRTWRRLKKKLDEESITFGSEF 292
           +  D ++   R   ++ +  +     F
Sbjct: 723 VSQDNMKEAFRFHDEMLQRGLVPDDRF 749



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 84/180 (46%), Gaps = 1/180 (0%)

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           + +++  Y +A + +   +    ++ KG+  ++   + ++  L   G ++ A E+ GE+V
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
           R G+  +  T N         +     M     M+  G+   ++ +YN LI  +     +
Sbjct: 250 RGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGV-FADIVTYNTLINAYCREGLV 308

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   ++ N     G+ P L +Y  +++GLC+  K+  A    +EM++ GL P   T+ TL
Sbjct: 309 EEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTL 368



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 1/204 (0%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           K +R   + F  +R +G+   + + + +L    R     L+ +    +   GI   V T 
Sbjct: 201 KKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTL 260

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + +V  LC   + E+    L +M   GV     TYN     Y        A +L      
Sbjct: 261 NIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSS 320

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G+  P + +YN ++     + + D  +++  ++   GL P+  +Y  L+  +C +    
Sbjct: 321 RGM-EPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNIL 379

Query: 238 EACQYFVEMIEKGLLPQKVTFETL 261
           EA + F EM  +G+LP  V+F +L
Sbjct: 380 EAQEIFDEMSRRGVLPDLVSFSSL 403


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 139/268 (51%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T L+ G+CK  R+  A+  L  M+ +G++P VVTYN L++G              K + 
Sbjct: 180 FTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGY----------FLVKQVN 229

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F+ M   G+ PD+ S+SI+++ + +      +++ L  M  K I P V TYSS++
Sbjct: 230 KAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLI 289

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+I  A +L+ EM   G  P+  TY+            + A+ L  QMK  G+ 
Sbjct: 290 DGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGI- 348

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PNM++Y ILI       +++  R+++ D+   G   ++ +YT++I G C+K  + EA  
Sbjct: 349 QPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALT 408

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              +M + G +P   T+E +   L + D
Sbjct: 409 LLSKMEDNGCIPNAKTYEIIILSLFKKD 436



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 141/277 (50%), Gaps = 1/277 (0%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C++  I  A   L ++++ G +PN +T N L+ G+C    +H        +++A 
Sbjct: 103 LINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAV 162

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +F++M +  I PDV +F+I++  + +  + + + + L  M  +GI P V TY+S++   
Sbjct: 163 DLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGY 222

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
               ++  A+ +   M + GV P  ++Y+     +   K  + AM+L ++M    + +PN
Sbjct: 223 FLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQI-IPN 281

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y+ LI       ++    ++ +++   G  P++ +Y+ ++  LC+  +   A     
Sbjct: 282 VVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLT 341

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +M  +G+ P   T+  L +GL QS  L   R++ + L
Sbjct: 342 QMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDL 378



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 138/286 (48%), Gaps = 31/286 (10%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N +D A      ++++   P  + +N +L       SL  S+ +   +  ++K    M  
Sbjct: 41  NDVDDAVSLFNRLLQQNPTPPNIEFNKIL------GSLVKSKHYHTVLYLSQK----MEF 90

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI-- 130
           RGI+P++ + +I+++ + +      +   L  + + G  P   T ++++K LC  G+I  
Sbjct: 91  RGIKPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHD 150

Query: 131 --------EDAEELLGEMVRNGVCPSAETYNC----FFKEYRGRKDANG-AMKLYRQMKE 177
                   +DA +L  +M+   + P   T+      F KE R ++  N  AM + + +K 
Sbjct: 151 KHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIK- 209

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
                P + +YN L+  +  + +++  + I+N +   G+ PD+ SY++LI+G C+ +   
Sbjct: 210 -----PGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMD 264

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           EA +   EM  K ++P  VT+ +L  GL +S  +    +L  ++ +
Sbjct: 265 EAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHD 310



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 75/141 (53%), Gaps = 10/141 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S++   CK +++D A   L +M  +G++PN+ TY +L+ G+C+   L           
Sbjct: 320 YSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKL----------E 369

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A KVF+++ V+G   +V ++++++  +        +L  L+ M++ G  P   TY  ++
Sbjct: 370 DARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIII 429

Query: 122 KCLCSCGRIEDAEELLGEMVR 142
             L      E AE+LL EM+ 
Sbjct: 430 LSLFKKDENEMAEKLLCEMIE 450


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 148/311 (47%), Gaps = 44/311 (14%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI   C+++ +D A   +G+M + G++P+ +T+N L+NG+C           E  I+ A 
Sbjct: 137 LINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCN----------EGKIKEAV 186

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +F+EM   G EP+V S++ V++   +     +++     M++    P V TY++++  L
Sbjct: 187 GLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSL 246

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE------- 177
           C    + +A E L EMV  G+ P   TYN     +      N A +L+++M         
Sbjct: 247 CKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDT 306

Query: 178 -------DGLCV--------------------PNMHSYNILIGMFMALNRMDMVREIWND 210
                  DGLC                     PN ++YN L+  +   N+MD   ++   
Sbjct: 307 VTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGI 366

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           + G G  P+L SY +LI+G C+ ++  EA +   EM EK L P  VT+ TL +GL Q   
Sbjct: 367 MIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGR 426

Query: 271 LRTWRRLKKKL 281
            R    L K++
Sbjct: 427 PREALNLFKEM 437



 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 166/318 (52%), Gaps = 33/318 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI- 60
           Y ++++G+C + +++ A R   EM+ R V P+ VT+N+L++G+C+   +  +    +T+ 
Sbjct: 274 YNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMT 333

Query: 61  -RNAE-----------------------KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            + AE                       KV   M  +G  P+++S++I+++ Y ++ +  
Sbjct: 334 EKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMN 393

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L+ M EK + P   TYS++++ LC  GR  +A  L  EM  +G+ P    Y+   
Sbjct: 394 EAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILL 453

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSG 215
             +      + A+KL ++M E  +  PN+  Y ILI GMF+A  ++++ +E+++ +   G
Sbjct: 454 DGFCKHGHLDEALKLLKEMHERRI-KPNIILYTILIRGMFIA-GKLEVAKELFSKLSADG 511

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           + PD+ +Y ++I GL ++    EA ++F +M + G LP   ++  + +G +Q+    T  
Sbjct: 512 IRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAI 571

Query: 276 RL-----KKKLDEESITF 288
           +L      K+   +S TF
Sbjct: 572 QLIDEMVGKRFSADSSTF 589



 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 136/285 (47%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK     MA R   +M +   +PNVVTYN +++ +C+          ++ + 
Sbjct: 204 YNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCK----------DRLVN 253

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +   EM  RGI PDV +++ +LH +    Q   +      M  + + P   T++ +V
Sbjct: 254 EAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILV 313

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G + +A  +   M   G  P+A TYN     Y      + A+K+   M   G C
Sbjct: 314 DGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKG-C 372

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ SYNILI  +    RM+  + + +++    L PD  +Y+ L+ GLC+  + +EA  
Sbjct: 373 APNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALN 432

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F EM   GLLP  + +  L  G  +   L    +L K++ E  I
Sbjct: 433 LFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRI 477



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 126/260 (48%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G+C  N++D A + LG MI +G  PN+ +YN+L+NG C+           K + 
Sbjct: 344 YNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCK----------SKRMN 393

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++  EM  + + PD  ++S ++    +  +P+ +L+    M   G+ P +  YS ++
Sbjct: 394 EAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILL 453

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +++A +LL EM    + P+   Y    +          A +L+ ++  DG+ 
Sbjct: 454 DGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGI- 512

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN++I   +     D   E +  ++  G  PD  SY ++I G  + Q    A Q
Sbjct: 513 RPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQ 572

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              EM+ K       TF+ L
Sbjct: 573 LIDEMVGKRFSADSSTFQML 592



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 119/226 (52%), Gaps = 11/226 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CK  R++ A+R L EM E+ + P+ VTY+ L+ G+C+     P        R
Sbjct: 379 YNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVG--RP--------R 428

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM   G+ PD+ ++SI+L  + +      +L  L  M E+ I P +  Y+ ++
Sbjct: 429 EALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILI 488

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + +   G++E A+EL  ++  +G+ P   TYN   K       ++ A + +R+M++DG  
Sbjct: 489 RGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGF- 547

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           +P+  SYN++I  F+         ++ +++ G     D  ++ ML+
Sbjct: 548 LPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLL 593



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 135/283 (47%), Gaps = 15/283 (5%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           ID A      M+     P+VV +   L  + ++          K   +A  + ++M + G
Sbjct: 77  IDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKK----------KQYSSAVSLCNQMDLFG 126

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           +  +V S +++++   R      ++  +  M + GI P   T+++++  LC+ G+I++A 
Sbjct: 127 VTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAV 186

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
            L  EMV +G  P+  +YN          +   A++++R+M E     PN+ +YN +I  
Sbjct: 187 GLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKM-EQNRGKPNVVTYNTIIDS 245

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                 ++   E  +++   G+ PD+ +Y  ++HG C   +  EA + F EM+ + ++P 
Sbjct: 246 LCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPD 305

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
            VTF  L  GL +  M+   R + + + E+    G+E   Y +
Sbjct: 306 TVTFNILVDGLCKEGMVSEARCVSETMTEK----GAEPNAYTY 344



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/142 (19%), Positives = 64/142 (45%), Gaps = 17/142 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G     ++++A+    ++   G+ P++ TYNV++ G+ +          E   
Sbjct: 483 LYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLK----------EGLS 532

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A + F +M   G  PD  S+++++  + +      ++  ++ M  K      +T+  +
Sbjct: 533 DEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQML 592

Query: 121 VKCLCSCGRIEDAEELLGEMVR 142
           +        +E  +E++   +R
Sbjct: 593 LD-------LESHDEIISRFMR 607


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 154/296 (52%), Gaps = 16/296 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI G+CK+ R++ A  ++ + I  G EP+ +TYN  +NG+C+             + +A 
Sbjct: 257 LINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQ----------NDHVGHAL 306

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           KV D M   G +PDV +++IV++   +  Q + +   LN M ++G  P + T+++++  L
Sbjct: 307 KVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAAL 366

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C+  R+E+A +L  ++   GV P   T+N          D + A++L+ +MK  G C P+
Sbjct: 367 CTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG-CTPD 425

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
             +YN LI    +L ++    ++  D++ +G      +Y  +I GLC+K + +EA + F 
Sbjct: 426 EVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFD 485

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTW-----RRLKKKLDEESITFGSEFQNY 295
           +M  +G+    +TF TL  GL +   +        + + + L   +IT+ S   +Y
Sbjct: 486 QMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHY 541



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 127/260 (48%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y + + G C+ + +  A + +  M++ G +P+V TYN+++N +C+   L           
Sbjct: 289 YNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLE---------- 338

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ + ++M  RG  PD+T+F+ ++      ++ + +LD    +  KG+ P V T++ ++
Sbjct: 339 EAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILI 398

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G    A  L  EM  +G  P   TYN              A+ L + M+  G C
Sbjct: 399 NALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG-C 457

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  +YN +I       R++   E+++ +   G+  +  ++  LI GLC+ +K  +A +
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFE 517

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              +MI +GL P  +T+ ++
Sbjct: 518 LINQMISEGLQPNNITYNSI 537



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 137/283 (48%), Gaps = 13/283 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI   C  NR++ A     ++  +GV P+V T+N+L+N +C+    H + R      
Sbjct: 359 FNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL----- 413

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP-TVATYSSV 120
                F+EM+  G  PD  +++ ++       +   +LD L  M+  G CP +  TY+++
Sbjct: 414 -----FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG-CPRSTITYNTI 467

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   RIE+AEE+  +M   G+  +A T+N         K  + A +L  QM  +GL
Sbjct: 468 IDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGL 527

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  +YN ++  +     +    +I   +  +G   D+ +Y  LI+GLC+  + + A 
Sbjct: 528 -QPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVAL 586

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           +    M  KG+ P    +  + + L + + +R    L +++ E
Sbjct: 587 KVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAE 629



 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 123/265 (46%), Gaps = 11/265 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L+    + +++ + E    EM  RG++P+VVT+N L+  +CR             +
Sbjct: 148 VYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCR----------AHQV 197

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R A  + +EM  RG+ PD T+F+ ++  +      + +L     M E G   T  T + +
Sbjct: 198 RTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVL 257

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  GR+EDA   + + + +G  P   TYN F            A+K+   M ++G 
Sbjct: 258 INGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEG- 316

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +YNI++       +++  + I N +   G  PD+ ++  LI  LC   + +EA 
Sbjct: 317 HDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEAL 376

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
               ++  KG+ P   TF  L   L
Sbjct: 377 DLARQVTVKGVSPDVYTFNILINAL 401



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 129/286 (45%), Gaps = 51/286 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK  RI+ AE    +M  +G+  N +T+N L++G+C+          +K I 
Sbjct: 464 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCK----------DKKID 513

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++ ++M   G++P+  +++ +L  Y +    + + D L  M   G    V TY +++
Sbjct: 514 DAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLI 573

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR + A ++L  M   G+ P+ + YN   +    R +   A+ L+R+M E    
Sbjct: 574 NGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAE---- 629

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE-KQKWKEAC 240
                                            G  PD  +Y ++  GLC      KEA 
Sbjct: 630 --------------------------------VGEPPDALTYKIVFRGLCRGGGPIKEAF 657

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDM----LRTWRRLKKKLD 282
            + +EM++KG +P+  +F  L  GL+   M    +R    + +K+D
Sbjct: 658 DFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEKVD 703



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 118/254 (46%), Gaps = 17/254 (6%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G++ + V YN LLN +   + +          +  E V+ EM  RGI+PDV +F+ ++  
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKM----------KLLESVYSEMGARGIKPDVVTFNTLMKA 190

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
             RAHQ + ++  L  M  +G+ P   T++++++     G IE A  +   M+  G   +
Sbjct: 191 LCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSAT 250

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             T N     Y        A+   +Q   DG   P+  +YN  +      + +    ++ 
Sbjct: 251 KVTVNVLINGYCKLGRVEDALGYIQQEIADGF-EPDQITYNTFVNGLCQNDHVGHALKVM 309

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           + +   G  PD+ +Y ++++ LC+  + +EA     +M+++G LP   TF TL   L   
Sbjct: 310 DVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALC-- 367

Query: 269 DMLRTWRRLKKKLD 282
               T  RL++ LD
Sbjct: 368 ----TGNRLEEALD 377



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 89/191 (46%), Gaps = 2/191 (1%)

Query: 95  PQLSLDKLNF-MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           P  +L  LN  +      P    Y  +++ L + G ++  + L+ EM R G        +
Sbjct: 54  PDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVH 113

Query: 154 CFFKEYRGRKDANGAMKL-YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
            F   Y G++  + A+ L   Q++       +   YN L+ + +  ++M ++  +++++ 
Sbjct: 114 SFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMG 173

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
             G+ PD+ ++  L+  LC   + + A     EM  +G+ P + TF TL +G ++   + 
Sbjct: 174 ARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIE 233

Query: 273 TWRRLKKKLDE 283
              R+K ++ E
Sbjct: 234 AALRVKARMLE 244


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 147/285 (51%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+L+ G C + +I  A     +M+  G +PNVVTY  L+NG+C+          ++ + 
Sbjct: 129 FTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCK----------DRQLT 178

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM  +GI PD+ +++ ++H      + +     LN M +  I P V + + VV
Sbjct: 179 EALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVV 238

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++ +A +++  M++ GV P   TY      +  R + + A+K++  M  +G C
Sbjct: 239 DALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNG-C 297

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V N+ SYN LI  +  + R+D    ++ ++    L P+  +Y+ LIHGLC   + ++A  
Sbjct: 298 VCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIA 357

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F EM+  G +P  VT+  L   L ++  L     L K ++  ++
Sbjct: 358 LFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNL 402



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 144/285 (50%), Gaps = 15/285 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++   CK  ++  A   +  MI+ GVEP+VVTY  L++G C R+ +            A 
Sbjct: 237 VVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMD----------EAV 286

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           KVFD M   G   +V S++ +++ Y +  +   ++     M  + + P   TYS+++  L
Sbjct: 287 KVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGL 346

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  GR++DA  L  EMV  G  P+  TY+              AM L + ++   L  P+
Sbjct: 347 CHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNL-DPD 405

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           +  YNI I        ++  R++++++   GL PD+ ++ ++I GLC++    EA + F 
Sbjct: 406 VQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFR 465

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
           EM E G L    T+ T+ +GL+Q++  +T R +  +L EE +  G
Sbjct: 466 EMDENGCLRNGCTYNTITQGLLQNN--KTSRAI--QLLEEMLARG 506



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 130/282 (46%), Gaps = 11/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+  C +         L EM++  + PNVV+ N++++ +C+          E  + 
Sbjct: 199 YNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCK----------EGKVT 248

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V D M   G+EPDV +++ ++  +    +   ++   + M   G    V +Y++++
Sbjct: 249 EAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLI 308

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI+ A  L  EM R  + P+  TY+              A+ L+ +M   G  
Sbjct: 309 NGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQ- 367

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+ +Y+IL+      +R+     +   ++GS L PD+  Y + I G+C     + A  
Sbjct: 368 IPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARD 427

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            F  +  +GL P   T   + RGL +  +L    +L +++DE
Sbjct: 428 LFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDE 469



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 115/252 (45%), Gaps = 11/252 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N +D A      M+     P +  +  LL  + +        +   T+ +  K  D    
Sbjct: 35  NTLDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKM-------KHYSTVLSLSKKMDSF-- 85

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
            GI PDV + +IV++ +   ++   +L  L  + + G  P  AT++++V+ LC  G+I +
Sbjct: 86  -GIPPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGE 144

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A ++  +MV  G  P+  TY          +    A+ L+ +M   G+  P++ +YN LI
Sbjct: 145 ALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGIS-PDIFTYNSLI 203

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                L     V  + N++  S + P++ S  +++  LC++ K  EA      MI+ G+ 
Sbjct: 204 HALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVE 263

Query: 253 PQKVTFETLYRG 264
           P  VT+  L  G
Sbjct: 264 PDVVTYAALMDG 275



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 88/178 (49%), Gaps = 10/178 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI+G C + R+  A     EM+  G  PN+VTY++LL+ +C+   L  +    K I 
Sbjct: 339 YSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIE 398

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            +           ++PDV  ++I +    RA   + + D  + +  +G+ P V T++ ++
Sbjct: 399 GSN----------LDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMI 448

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           + LC  G +++A +L  EM  NG   +  TYN   +        + A++L  +M   G
Sbjct: 449 RGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARG 506



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 1/125 (0%)

Query: 163 KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS 222
           K  +  + L ++M   G+  P++++  I+I  F  LNR+D    +   +   G  PD  +
Sbjct: 70  KHYSTVLSLSKKMDSFGI-PPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTAT 128

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           +T L+ GLC   K  EA   F +M+ +G  P  VT+ TL  GL +   L     L  ++ 
Sbjct: 129 FTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMI 188

Query: 283 EESIT 287
            + I+
Sbjct: 189 AKGIS 193



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 67/142 (47%), Gaps = 10/142 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y   I G C+   ++ A      +  RG++P+V T+N+++ G+C+R  L          
Sbjct: 408 VYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLL---------- 457

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+F EM   G   +  +++ +     + ++   ++  L  M  +G    V+T + +
Sbjct: 458 DEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALL 517

Query: 121 VKCLCSCGRIEDAEELLGEMVR 142
           VK L   G  +  +++L E +R
Sbjct: 518 VKMLSDDGLDQSVKQILCEFMR 539


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 145/282 (51%), Gaps = 12/282 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++++++   CK  ++  A   +  MI+RGVEP+VVTY  L++G C           +  +
Sbjct: 268 IFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHC----------LQSEM 317

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A KVFD M  +G  PDV S++ +++ Y + H+   ++     M  K   P   TY+++
Sbjct: 318 DEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTL 377

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  GR++DA  L  EMV  G  P   TY+              AM L + ++   L
Sbjct: 378 MHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNL 437

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++  YNI+I        ++  R++++++   GL P + +Y ++IHGLC++    EA 
Sbjct: 438 N-PDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEAN 496

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSD-MLRTWRRLKKKL 281
           + F+EM      P   T+ T+ RG +Q++  LR  + L++ L
Sbjct: 497 KLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEML 538



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 147/310 (47%), Gaps = 26/310 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           +T+LI G C   +I  A     +MI+ G +PNVVTY  L+NG+C+  +   + R      
Sbjct: 129 FTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSME 188

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               ++ +  A  +F +M  +GI PD+ +++ ++H      + +
Sbjct: 189 QGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWK 248

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
                LN M    I P V  +S+VV  LC  G++ +A E++  M++ GV P   TY    
Sbjct: 249 HVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLM 308

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +  + + + A+K++  M   G   P++ SY  LI  +  ++++D    ++ ++     
Sbjct: 309 DGHCLQSEMDEAVKVFDMMVRKGF-APDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEW 367

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD  +Y  L+HGLC   + ++A   F EM+ +G +P  VT+  L   L ++  L     
Sbjct: 368 IPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMA 427

Query: 277 LKKKLDEESI 286
           L K ++  ++
Sbjct: 428 LLKAIEASNL 437



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 130/281 (46%), Gaps = 11/281 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSL++  C +         L +M+   + P+VV ++ +++ +C+          E  + 
Sbjct: 234 YTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCK----------EGKVT 283

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D M  RG+EPDV +++ ++  +    +   ++   + M  KG  P V +Y++++
Sbjct: 284 EAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLI 343

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   +I+ A  L  EM R    P  +TYN              A+ L+ +M   G  
Sbjct: 344 NGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQ- 402

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y+IL+        ++    +   ++ S L PD+  Y ++I G+C   + + A  
Sbjct: 403 MPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARD 462

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
            F  +  KGL P   T+  +  GL +  +L    +L  ++D
Sbjct: 463 LFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMD 503



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 118/248 (47%), Gaps = 11/248 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+CKI++ID A     EM  +   P+  TYN L++G+C    L          +
Sbjct: 339 YTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRL----------Q 388

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +F EM  RG  PD+ ++SI+L    +    + ++  L  ++   + P +  Y+ ++
Sbjct: 389 DAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIII 448

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G +E A +L   +   G+ PS  TYN        R   N A KL+ +M  +  C
Sbjct: 449 DGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGND-C 507

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN +   F+  N      ++  ++   G   D+ + T+L+  L +    + +C 
Sbjct: 508 SPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLVEMLSDDGLDQSSCF 567

Query: 242 YFVEMIEK 249
             + ++ +
Sbjct: 568 LMLSVLSE 575



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 113/253 (44%), Gaps = 11/253 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N +D A      ++     P++V +  LL  + +           K       +  +M  
Sbjct: 35  NTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKM----------KHYSTVLSLSTQMDS 84

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
            G+ P+V + +I+++ +   ++   +   L  + + G  P   T++++++ LC  G+I +
Sbjct: 85  FGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGE 144

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A  L  +M+  G  P+  TY           + + A++L R M E G C P++  Y  +I
Sbjct: 145 ALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSM-EQGNCQPDVVIYTSII 203

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                  ++     +++ + G G+ PD+ +YT L+H LC   +WK       +M+   +L
Sbjct: 204 DSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKIL 263

Query: 253 PQKVTFETLYRGL 265
           P  V F T+   L
Sbjct: 264 PDVVIFSTVVDAL 276



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 1/154 (0%)

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           ++DA      ++     PS   +          K  +  + L  QM   G+  PN+++ N
Sbjct: 37  LDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGV-PPNVYTLN 95

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
           ILI  F  LNR+     +   +   G  PD  ++T LI GLC + K  EA   F +MI++
Sbjct: 96  ILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDE 155

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           G  P  VT+ TL  GL +        RL + +++
Sbjct: 156 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQ 189


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 154/296 (52%), Gaps = 16/296 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI G+CK+ R++ A  ++ + I  G EP+ +TYN  +NG+C+             + +A 
Sbjct: 257 LINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQ----------NDHVGHAL 306

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           KV D M   G +PDV +++IV++   +  Q + +   LN M ++G  P + T+++++  L
Sbjct: 307 KVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAAL 366

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C+  R+E+A +L  ++   GV P   T+N          D + A++L+ +MK  G C P+
Sbjct: 367 CTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG-CTPD 425

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
             +YN LI    +L ++    ++  D++ +G      +Y  +I GLC+K + +EA + F 
Sbjct: 426 EVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFD 485

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTW-----RRLKKKLDEESITFGSEFQNY 295
           +M  +G+    +TF TL  GL +   +        + + + L   +IT+ S   +Y
Sbjct: 486 QMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHY 541



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 127/260 (48%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y + + G C+ + +  A + +  M++ G +P+V TYN+++N +C+   L           
Sbjct: 289 YNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLE---------- 338

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ + ++M  RG  PD+T+F+ ++      ++ + +LD    +  KG+ P V T++ ++
Sbjct: 339 EAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILI 398

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G    A  L  EM  +G  P   TYN              A+ L + M+  G C
Sbjct: 399 NALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG-C 457

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  +YN +I       R++   E+++ +   G+  +  ++  LI GLC+ +K  +A +
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFE 517

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              +MI +GL P  +T+ ++
Sbjct: 518 LINQMISEGLQPNNITYNSI 537



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 137/283 (48%), Gaps = 13/283 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI   C  NR++ A     ++  +GV P+V T+N+L+N +C+    H + R      
Sbjct: 359 FNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL----- 413

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP-TVATYSSV 120
                F+EM+  G  PD  +++ ++       +   +LD L  M+  G CP +  TY+++
Sbjct: 414 -----FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG-CPRSTITYNTI 467

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   RIE+AEE+  +M   G+  +A T+N         K  + A +L  QM  +GL
Sbjct: 468 IDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGL 527

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  +YN ++  +     +    +I   +  +G   D+ +Y  LI+GLC+  + + A 
Sbjct: 528 -QPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVAL 586

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           +    M  KG+ P    +  + + L + + +R    L +++ E
Sbjct: 587 KVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAE 629



 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 123/265 (46%), Gaps = 11/265 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L+    + +++ + E    EM  RG++P+VVT+N L+  +CR             +
Sbjct: 148 VYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCR----------AHQV 197

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R A  + +EM  RG+ PD T+F+ ++  +      + +L     M E G   T  T + +
Sbjct: 198 RTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVL 257

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  GR+EDA   + + + +G  P   TYN F            A+K+   M ++G 
Sbjct: 258 INGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEG- 316

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +YNI++       +++  + I N +   G  PD+ ++  LI  LC   + +EA 
Sbjct: 317 HDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEAL 376

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
               ++  KG+ P   TF  L   L
Sbjct: 377 DLARQVTVKGVSPDVYTFNILINAL 401



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 129/286 (45%), Gaps = 51/286 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK  RI+ AE    +M  +G+  N +T+N L++G+C+          +K I 
Sbjct: 464 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCK----------DKKID 513

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++ ++M   G++P+  +++ +L  Y +    + + D L  M   G    V TY +++
Sbjct: 514 DAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLI 573

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR + A ++L  M   G+ P+ + YN   +    R +   A+ L+R+M E    
Sbjct: 574 NGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAE---- 629

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE-KQKWKEAC 240
                                            G  PD  +Y ++  GLC      KEA 
Sbjct: 630 --------------------------------VGEPPDALTYKIVFRGLCRGGGPIKEAF 657

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDM----LRTWRRLKKKLD 282
            + +EM++KG +P+  +F  L  GL+   M    +R    + +K+D
Sbjct: 658 DFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEKVD 703



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 118/254 (46%), Gaps = 17/254 (6%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G++ + V YN LLN +   + +          +  E V+ EM  RGI+PDV +F+ ++  
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKM----------KLLESVYSEMGARGIKPDVVTFNTLMKA 190

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
             RAHQ + ++  L  M  +G+ P   T++++++     G IE A  +   M+  G   +
Sbjct: 191 LCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSAT 250

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             T N     Y        A+   +Q   DG   P+  +YN  +      + +    ++ 
Sbjct: 251 KVTVNVLINGYCKLGRVEDALGYIQQEIADGF-EPDQITYNTFVNGLCQNDHVGHALKVM 309

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           + +   G  PD+ +Y ++++ LC+  + +EA     +M+++G LP   TF TL   L   
Sbjct: 310 DVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALC-- 367

Query: 269 DMLRTWRRLKKKLD 282
               T  RL++ LD
Sbjct: 368 ----TGNRLEEALD 377



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 89/191 (46%), Gaps = 2/191 (1%)

Query: 95  PQLSLDKLNF-MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           P  +L  LN  +      P    Y  +++ L + G ++  + L+ EM R G        +
Sbjct: 54  PDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVH 113

Query: 154 CFFKEYRGRKDANGAMKL-YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
            F   Y G++  + A+ L   Q++       +   YN L+ + +  ++M ++  +++++ 
Sbjct: 114 SFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMG 173

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
             G+ PD+ ++  L+  LC   + + A     EM  +G+ P + TF TL +G ++   + 
Sbjct: 174 ARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIE 233

Query: 273 TWRRLKKKLDE 283
              R+K ++ E
Sbjct: 234 AALRVKARMLE 244


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 143/267 (53%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I+G C+ N  D A  FL EM ER V P+V TYN+L++G+C+ +         KT +
Sbjct: 229 YNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKAS---------KTDK 279

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            +E +  EM  RG+ PD  +F+ ++    +A + + +   L  M E+   P+  TY++++
Sbjct: 280 ASE-MLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLI 338

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    ++ A++L+ E V +G  P   TY+        R   + A +L ++M   G C
Sbjct: 339 SGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKG-C 397

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN LI      ++ +   E+   +  SG  PD+ +YT+++ GLC++ +  +A +
Sbjct: 398 TPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALK 457

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
               M+++G  P  +T+  L  GL ++
Sbjct: 458 MVEGMLKRGCTPSVITYTALMEGLCRT 484



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 138/292 (47%), Gaps = 43/292 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L  G CK  RID A   + EM  +G  PN+VTYN L++G+C+      + + EK   
Sbjct: 369 YSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCK------ASKTEK--- 419

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ + +   G  PDV +++I++    +  +   +L  +  M ++G  P+V TY++++
Sbjct: 420 -AYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALM 478

Query: 122 KCLCSCGRIEDAEELLGEMVR--------------NGVCPSAET---------------- 151
           + LC  GR+++A  +  EMV               NG C S+ T                
Sbjct: 479 EGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYI 538

Query: 152 --YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
             YN     Y      +    ++  M   G CVPN+ +YNI++       ++D       
Sbjct: 539 DVYNALMDGYCKEGRLDEIPNVFEDMACRG-CVPNIKTYNIVMDGLCKHGKVDEAFPFLE 597

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            +  +G  PD+ SY ++I GL +  K KEA Q   +MI+ G+ P  VT+ TL
Sbjct: 598 SMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTL 649



 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 126/267 (47%), Gaps = 15/267 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I   C++N+ID A   L +   RG +P V  Y +L    C+   L          +
Sbjct: 163 YHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRL----------K 212

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F  +      PD  +++ ++H + R +    +L+ L  M E+ + P V TY+ ++
Sbjct: 213 DALEIFRNIP----SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILI 268

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   + + A E+L EMV  GV P   T+N              A  L   M E   C
Sbjct: 269 DGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERN-C 327

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN LI        +D  +++ ++   SG  PD+ +Y++L  GLC++ +  EA +
Sbjct: 328 RPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFE 387

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
              EM  KG  P  VT+ TL  GL ++
Sbjct: 388 LVKEMSGKGCTPNLVTYNTLIDGLCKA 414



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 135/281 (48%), Gaps = 13/281 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +L+ G+CK  R+D       +M  RG  PN+ TYN++++G+C+   +  +  F +++
Sbjct: 540 VYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESM 599

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A          G  PDV S++I++    +A +P+ +   L+ M + GI P   TY+++
Sbjct: 600 HSA----------GCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTL 649

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C   R +DA  +L  M++ GV P   TYN              A +L  +M  +G 
Sbjct: 650 MAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGC 709

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            V    +YN +I        +     + + + G G+  +  +Y + I  LC++ +  EA 
Sbjct: 710 VVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEAS 769

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
               EM     L  +V++ T+  GL +++ L    +L +++
Sbjct: 770 SLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREM 807



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 132/275 (48%), Gaps = 37/275 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y +L+  +CK  R D A   L  MI+ GV+P+ VTYN L++G+ +   L  +        
Sbjct: 646 YNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEML 705

Query: 57  ---------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY---SRA 92
                                E  ++ A  + D M   G+E +  +++I +       R 
Sbjct: 706 RNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRL 765

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR-NGVCPSAET 151
            +    L +++ ++++       +Y++V+  LC   +++ A +L  EMV   G+C ++ T
Sbjct: 766 DEASSLLSEMDTLRDE------VSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHT 819

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           +N     +   K  + A+ L   M + G C P++ +YN++I     L+++D   E+++++
Sbjct: 820 FNLLIDAFTKTKRLDEALTLLGLMVQRG-CSPSVITYNMVITCLCKLDKVDKAWELFDEM 878

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
              G+     SYT+LI+GLC + + KEA Q   EM
Sbjct: 879 AVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEM 913



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 119/257 (46%), Gaps = 18/257 (7%)

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
           +RG + +  T N  L  +    S   S+R          +F+ M   G  PD  ++ +V+
Sbjct: 118 DRGFKHSTFTRNCFLQTLLENGS---SDRIPA-------MFERMLDAGYAPDSYTYHLVI 167

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
               + +Q   +   L+  K +G  P V+ Y+ + +  C  GR++DA E+     RN   
Sbjct: 168 KSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIF----RNIPS 223

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P A  YN     +  + D +GA++  ++M E  +  P++ +YNILI      ++ D   E
Sbjct: 224 PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKV-APDVFTYNILIDGLCKASKTDKASE 282

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           + +++   G+ PD  ++  ++ GLC+  K++ A      M E+   P   T+ TL  GL 
Sbjct: 283 MLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLC 342

Query: 267 QSDMLRTWRRLKKKLDE 283
           +    +   R K  +DE
Sbjct: 343 KQ---QNVDRAKDLVDE 356



 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/93 (22%), Positives = 44/93 (47%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I   CK++++D A     EM  RG+  + V+Y VL+ G+C +     + +  + + 
Sbjct: 855 YNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMA 914

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ 94
           +++   D+++   + P     +     YS  H 
Sbjct: 915 SSDCEIDDLKWEDVAPHSQFQTTFGPCYSSFHS 947


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 145/263 (55%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+CK  ++  A+  L EM+ + + PN +T+N+L++G CR          ++ + 
Sbjct: 267 YNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCR----------DENVT 316

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+KVF+EM+ +G++P+V +++ +++      +   +L   + M   G+ P V TY++++
Sbjct: 317 AAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALI 376

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    +++A E+L ++ + G+ P+  T+N     Y      + A  L   M + G+C
Sbjct: 377 NGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVC 436

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN LI  F     +   R++  +++G+GL  DL +Y +L+  LC+K + ++A +
Sbjct: 437 -PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVR 495

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
              EM E GL P  +T+  L  G
Sbjct: 496 LLDEMFEVGLNPSHLTYNALIDG 518



 Score =  137 bits (344), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 136/260 (52%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G C   ++D A     +M   G++PNVVTYN L+NG C++          K ++
Sbjct: 337 YNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKK----------KMLK 386

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D++  RG+ P+V +F+ ++  Y +A +   +    + M + G+CP V+TY+ ++
Sbjct: 387 EAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLI 446

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +++A +L  EM  NG+     TYN        + +   A++L  +M E GL 
Sbjct: 447 VGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLN 506

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN LI  +           +   ++  G   ++ +Y +LI G C K K +EA +
Sbjct: 507 -PSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANR 565

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              EM+EKGL+P + T++ L
Sbjct: 566 LLNEMLEKGLIPNRTTYDIL 585



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 135/282 (47%), Gaps = 14/282 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +I G CK+ +   A   + +M   G  P+V+TYN +++G C+   +           
Sbjct: 232 FDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMF---------- 281

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +  EM  + I P+  +F+I++  + R      +      M+ +G+ P V TY+S++
Sbjct: 282 KADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLI 341

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LCS G++++A  L  +M   G+ P+  TYN     +  +K    A ++   + + GL 
Sbjct: 342 NGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGL- 400

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ ++N LI  +    RMD    + + +  +G+ P++ +Y  LI G C +   KEA +
Sbjct: 401 APNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARK 460

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
              EM   GL    VT+  L   L +    R   RL   LDE
Sbjct: 461 LAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRL---LDE 499



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 130/257 (50%), Gaps = 11/257 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L++ + K   +D+A        + G   + ++ N +L  + +          E  I   E
Sbjct: 165 LVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVK----------EGRIGVVE 214

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            V+ EM  R I  +V +F +V++   +  + Q + D +  MK  G  P+V TY++++   
Sbjct: 215 SVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGY 274

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G++  A+ LL EMV   + P+  T+N     +   ++   A K++ +M+  GL  PN
Sbjct: 275 CKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGL-QPN 333

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +YN LI    +  ++D    + + + G GL P++ +Y  LI+G C+K+  KEA +   
Sbjct: 334 VVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLD 393

Query: 245 EMIEKGLLPQKVTFETL 261
           ++ ++GL P  +TF TL
Sbjct: 394 DIGKRGLAPNVITFNTL 410



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 132/278 (47%), Gaps = 11/278 (3%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++    K  RI + E    EMI R +  NVVT++V++NG+C+        +F+K    A 
Sbjct: 200 MLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVG------KFQK----AG 249

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            V ++M+  G  P V +++ ++  Y +A +   +   L  M  K I P   T++ ++   
Sbjct: 250 DVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGF 309

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C    +  A+++  EM R G+ P+  TYN            + A+ L  +M   GL  PN
Sbjct: 310 CRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGL-KPN 368

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +YN LI  F     +   RE+ +D+   GL P++ ++  LI    +  +  +A     
Sbjct: 369 VVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRS 428

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
            M++ G+ P   T+  L  G  +   ++  R+L K+++
Sbjct: 429 MMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEME 466



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 10/133 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+   CK      A R L EM E G+ P+ +TYN L++G  R          E    
Sbjct: 477 YNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFR----------EGNST 526

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V   M  +G   ++ ++++++  +    + + +   LN M EKG+ P   TY  + 
Sbjct: 527 AALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILR 586

Query: 122 KCLCSCGRIEDAE 134
             +   G I D +
Sbjct: 587 DEMMEKGFIPDID 599


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 142/291 (48%), Gaps = 26/291 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           YTSLI G C  +R   A   L EM    + PNVVT+NVL++  C+   +  +E   KT  
Sbjct: 153 YTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMT 212

Query: 60  -----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  +  A K+FD M  +G +PDV S+SI+++ Y +A +  
Sbjct: 213 EMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRID 272

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    N M  +G  P   +Y++++  LC  GR+ +A++L   M  NG  P+  TY    
Sbjct: 273 EAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILL 332

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +  +     A +L+R M+   L  PN+  YNIL+        +   RE+++++   GL
Sbjct: 333 DGFCKQGYLGKAFRLFRAMQSTYL-KPNLVMYNILVNAMCKSGNLKDARELFSELFVIGL 391

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            P++  YT +I+GLC++    EA + F  M + G  P + ++  + RG +Q
Sbjct: 392 QPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQ 442



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 146/280 (52%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G  K+ +   A     +M+ RG +P+  TY  ++NG+C+          E  + 
Sbjct: 48  FTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIG--------ETAL- 98

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F +M   G + +V ++S ++H   +  +   +LD  ++MK K I PT+ TY+S++
Sbjct: 99  -AAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLI 157

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC+  R ++A  LL EM    + P+  T+N     +        A  + + M E G+ 
Sbjct: 158 QGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGV- 216

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN L+  +     +   R++++ +   G  PD+ SY++LI+G C+ ++  EA Q
Sbjct: 217 EPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQ 276

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            F EMI +G  P  V++ TL  GL Q   LR  + L K +
Sbjct: 277 LFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNM 316



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 133/280 (47%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G CKI    +A     +M E G + NVVTY+ L++ +C+           + + 
Sbjct: 83  YTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKY----------RRVN 132

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F  M+ + I P + +++ ++       + + +   LN M    I P V T++ +V
Sbjct: 133 EALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLV 192

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++  AE +L  M   GV P   TYN     Y    +   A KL+  M   G C
Sbjct: 193 DTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKG-C 251

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SY+ILI  +    R+D  ++++N++   G  P+  SY  LIHGLC+  + +EA  
Sbjct: 252 KPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQD 311

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            F  M   G LP   T+  L  G  +   L    RL + +
Sbjct: 312 LFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAM 351



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 94/192 (48%), Gaps = 1/192 (0%)

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           M + G+ P+  + +I+++ + +  +  L    L    + G+ PT+ T+++++  L   G+
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGK 60

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
              A EL  +MV  G  P   TY           +   A  L+++M+E G C  N+ +Y+
Sbjct: 61  FAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAG-CQLNVVTYS 119

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            LI       R++   +I++ +K   + P + +YT LI GLC   +WKEA     EM   
Sbjct: 120 TLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSL 179

Query: 250 GLLPQKVTFETL 261
            ++P  VTF  L
Sbjct: 180 NIMPNVVTFNVL 191



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 98/204 (48%), Gaps = 25/204 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G+CK  RID A++   EMI +G  PN V+YN L++G+C+   L  ++   K + 
Sbjct: 258 YSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMH 317

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     A ++F  M+   ++P++  ++I+++   ++   +
Sbjct: 318 TNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLK 377

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + +  + +   G+ P V  Y++++  LC  G +++A E    M  +G  P   +YN   
Sbjct: 378 DARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVII 437

Query: 157 KEYRGRKDANGAMKLYRQMKEDGL 180
           + +   KD + A+ L  +M++ G 
Sbjct: 438 RGFLQHKDESRAVHLIGEMRDRGF 461



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 69/178 (38%), Gaps = 42/178 (23%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M+  G+ P   T + ++ C C   R++    +L + ++ G+ P+  T+            
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFT----------- 49

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
                                     LI     + +     E+++D+   G  PD  +YT
Sbjct: 50  -------------------------TLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYT 84

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
            +I+GLC+  +   A   F +M E G     VT+ TL   L +      +RR+ + LD
Sbjct: 85  TIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCK------YRRVNEALD 136



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 10/118 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY  L+   CK   +  A     E+   G++PNV  Y  ++NG+C+          E  +
Sbjct: 362 MYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCK----------EGLL 411

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
             A + F  M   G  PD  S+++++  + +      ++  +  M+++G      T +
Sbjct: 412 DEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFITDAGTTA 469


>gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71060, mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 142/266 (53%), Gaps = 12/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GW +   +        EM + G EP+VVT+ +L+N  C+      + ++++ IR
Sbjct: 263 YTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCK------ARKYDEAIR 316

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F EM  + I+P    F  +++      + + +L+    +K  G  P   TY++VV
Sbjct: 317 ----LFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVV 372

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMKEDGL 180
              C   ++  A  ++ EM ++GV P++ TY+       +GRK +  A  ++++M  +  
Sbjct: 373 GAYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRK-SKEAYSVFQRMSREPG 431

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P + +Y+I+I MF    R+DM  +IW+++K  G+ P +  ++ LI+ LC + K ++AC
Sbjct: 432 CEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDAC 491

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLI 266
            YF EM++ G+ P    F  L + L+
Sbjct: 492 TYFQEMLDVGIRPPATMFSNLKQALL 517



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 102/210 (48%), Gaps = 8/210 (3%)

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           +G +    S+++++    +  Q  +  + ++ MK KGI  +  T++ + +      ++++
Sbjct: 150 KGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGIL-SRETFALITRRYARARKVKE 208

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A E   +M + G       +N         ++   A +++ +MK  G   P++ SY IL+
Sbjct: 209 AVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKH-GRFKPDIKSYTILL 267

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
             +     +  + E++ +++  G  PD+ ++ +LI+  C+ +K+ EA + F EM  K + 
Sbjct: 268 EGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIK 327

Query: 253 PQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           P    F TL  G      L + +RLK+ L+
Sbjct: 328 PSPHVFCTLING------LGSEKRLKEALE 351


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 154/296 (52%), Gaps = 16/296 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI G+CK+ R++ A  ++ + I  G EP+ +TYN  +NG+C+             + +A 
Sbjct: 257 LINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQN----------DHVGHAL 306

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           KV D M   G +PDV +++IV++   +  Q + +   LN M ++G  P + T+++++  L
Sbjct: 307 KVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAAL 366

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C+  R+E+A +L  ++   GV P   T+N          D + A++L+ +MK  G C P+
Sbjct: 367 CTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG-CTPD 425

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
             +YN LI    +L ++    ++  D++ +G      +Y  +I GLC+K + +EA + F 
Sbjct: 426 EVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFD 485

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTW-----RRLKKKLDEESITFGSEFQNY 295
           +M  +G+    +TF TL  GL +   +        + + + L   +IT+ S   +Y
Sbjct: 486 QMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHY 541



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 126/260 (48%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y + + G C+ + +  A + +  M++ G +P+V TYN+++N +C+   L           
Sbjct: 289 YNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLE---------- 338

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ + ++M  RG  PD+T+F+ ++      ++ + +LD    +  KG+ P V T++ ++
Sbjct: 339 EAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILI 398

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G    A  L  EM  +G  P   TYN              A+ L + M+  G C
Sbjct: 399 NALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG-C 457

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  +YN +I       R++   E+++ +   G+  +  ++  LI GLC+ +K  +A  
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFG 517

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              +MI +GL P  +T+ ++
Sbjct: 518 LINQMISEGLQPNNITYNSI 537



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 136/283 (48%), Gaps = 13/283 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI   C  NR++ A     ++  +GV P+V T+N+L+N +C+    H + R      
Sbjct: 359 FNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL----- 413

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP-TVATYSSV 120
                F+EM+  G  PD  +++ ++       +   +LD L  M+  G CP +  TY+++
Sbjct: 414 -----FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG-CPRSTITYNTI 467

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   RIE+AEE+  +M   G+  +A T+N         K  + A  L  QM  +GL
Sbjct: 468 IDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGL 527

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  +YN ++  +     +    +I   +  +G   D+ +Y  LI+GLC+  + + A 
Sbjct: 528 -QPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVAL 586

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           +    M  KG+ P    +  + + L + + +R    L +++ E
Sbjct: 587 KVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAE 629



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 123/265 (46%), Gaps = 11/265 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L+    + +++ + E    EM  RG++P+VVT+N L+  +CR             +
Sbjct: 148 VYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCR----------AHQV 197

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R A  + +EM  RG+ PD T+F+ ++  +      + +L     M E G   T  T + +
Sbjct: 198 RTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVL 257

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  GR+EDA   + + + +G  P   TYN F            A+K+   M ++G 
Sbjct: 258 INGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEG- 316

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +YNI++       +++  + I N +   G  PD+ ++  LI  LC   + +EA 
Sbjct: 317 HDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEAL 376

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
               ++  KG+ P   TF  L   L
Sbjct: 377 DLARQVTVKGVSPDVYTFNILINAL 401



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 128/286 (44%), Gaps = 51/286 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK  RI+ AE    +M  +G+  N +T+N L++G+C+          +K I 
Sbjct: 464 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCK----------DKKID 513

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  + ++M   G++P+  +++ +L  Y +    + + D L  M   G    V TY +++
Sbjct: 514 DAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLI 573

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR + A ++L  M   G+ P+ + YN   +    R +   A+ L+R+M E    
Sbjct: 574 NGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAE---- 629

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE-KQKWKEAC 240
                                            G  PD  +Y ++  GLC      KEA 
Sbjct: 630 --------------------------------VGEPPDALTYKIVFRGLCRGGGPIKEAF 657

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDM----LRTWRRLKKKLD 282
            + +EM++KG +P+  +F  L  GL+   M    +R    + +K+D
Sbjct: 658 DFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEKVD 703



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 118/254 (46%), Gaps = 17/254 (6%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G++ + V YN LLN +   + +          +  E V+ EM  RGI+PDV +F+ ++  
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKM----------KLLESVYSEMGARGIKPDVVTFNTLMKA 190

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
             RAHQ + ++  L  M  +G+ P   T++++++     G IE A  +   M+  G   +
Sbjct: 191 LCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSAT 250

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             T N     Y        A+   +Q   DG   P+  +YN  +      + +    ++ 
Sbjct: 251 KVTVNVLINGYCKLGRVEDALGYIQQEIADGF-EPDQITYNTFVNGLCQNDHVGHALKVM 309

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           + +   G  PD+ +Y ++++ LC+  + +EA     +M+++G LP   TF TL   L   
Sbjct: 310 DVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALC-- 367

Query: 269 DMLRTWRRLKKKLD 282
               T  RL++ LD
Sbjct: 368 ----TGNRLEEALD 377



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 89/191 (46%), Gaps = 2/191 (1%)

Query: 95  PQLSLDKLNF-MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           P  +L  LN  +      P    Y  +++ L + G ++  + L+ EM R G        +
Sbjct: 54  PDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVH 113

Query: 154 CFFKEYRGRKDANGAMKL-YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
            F   Y G++  + A+ L   Q++       +   YN L+ + +  ++M ++  +++++ 
Sbjct: 114 SFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMG 173

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
             G+ PD+ ++  L+  LC   + + A     EM  +G+ P + TF TL +G ++   + 
Sbjct: 174 ARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIE 233

Query: 273 TWRRLKKKLDE 283
              R+K ++ E
Sbjct: 234 AALRVKARMLE 244


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 140/269 (52%), Gaps = 11/269 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++++++   CK  ++  A   +  MI+RGVEP+VVTY  L++G C ++ +          
Sbjct: 277 IFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMD--------- 327

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A KVFD M  +G  PDV S++ +++ Y + H+   ++     M  K   P   TY+++
Sbjct: 328 -EAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTL 386

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  GR++DA  L  EMV  G  P   TY+         +    AM L + ++   L
Sbjct: 387 MYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNL 446

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++  YNI+I        ++  R++++++   GL P + +Y ++IHGLC++    EA 
Sbjct: 447 N-PDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEAN 505

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           + F+EM      P   T+ T+ RG +Q++
Sbjct: 506 KLFMEMDGNDCSPDGCTYNTIARGFLQNN 534



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 147/311 (47%), Gaps = 26/311 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           +T+LI G C   +I  A     +MI+ G +PNVVTY  L+NG+C+  +   + R      
Sbjct: 138 FTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSME 197

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               ++ +  A  +F +M  +GI PD+ +++ ++H      + +
Sbjct: 198 QGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWK 257

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
                LN M    I P V  +S+VV  LC  G++ +A E++  M++ GV P   TY    
Sbjct: 258 HVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLM 317

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +  + + + A+K++  M   G   P++ SY  LI  +  ++++D    ++ ++     
Sbjct: 318 DGHCLQSEMDEAVKVFDMMVRKGFA-PDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEW 376

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD  +Y  L++GLC   + ++A   F EM+ +G +P  VT+  L   L ++  L     
Sbjct: 377 IPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMA 436

Query: 277 LKKKLDEESIT 287
           L K ++  ++ 
Sbjct: 437 LLKAIEASNLN 447



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 130/281 (46%), Gaps = 11/281 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSL++  C +         L +M+   + P+VV ++ +++ +C+          E  + 
Sbjct: 243 YTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCK----------EGKVT 292

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D M  RG+EPDV +++ ++  +    +   ++   + M  KG  P V +Y++++
Sbjct: 293 EAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLI 352

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   +I+ A  L  EM R    P  +TYN              A+ L+ +M   G  
Sbjct: 353 NGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQ- 411

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y+IL+        ++    +   ++ S L PD+  Y ++I G+C   + + A  
Sbjct: 412 MPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARD 471

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
            F  +  KGL P   T+  +  GL +  +L    +L  ++D
Sbjct: 472 LFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMD 512



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 113/254 (44%), Gaps = 11/254 (4%)

Query: 12  INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMR 71
            N +D A      ++     P++V +  LL  + +           K       +  +M 
Sbjct: 43  FNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKM----------KHYSTVLSLSTQMD 92

Query: 72  VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIE 131
             G+ P+V + +I+++ +   ++   +   L  + + G  P   T++++++ LC  G+I 
Sbjct: 93  SFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIG 152

Query: 132 DAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNIL 191
           +A  L  +M+  G  P+  TY           + + A++L R M E G C P++  Y  +
Sbjct: 153 EALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSM-EQGNCQPDVVIYTSI 211

Query: 192 IGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 251
           I       ++     +++ + G G+ PD+ +YT L+H LC   +WK       +M+   +
Sbjct: 212 IDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKI 271

Query: 252 LPQKVTFETLYRGL 265
           LP  V F T+   L
Sbjct: 272 LPDVVIFSTVVDAL 285



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 10/179 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+YG C + R+  A     EM+ RG  P++VTY++LL+ +C+   L  +    K I 
Sbjct: 383 YNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIE 442

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            +           + PD+  ++I++    RA + + + D  + +  KG+ P+V TY+ ++
Sbjct: 443 ASN----------LNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMI 492

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             LC  G + +A +L  EM  N   P   TYN   + +    +   A++L  +M   G 
Sbjct: 493 HGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGF 551


>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 142/266 (53%), Gaps = 12/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GW +   +        EM + G EP+VVT+ +L+N  C+      + ++++ IR
Sbjct: 263 YTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCK------ARKYDEAIR 316

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F EM  + I+P    F  +++      + + +L+    +K  G  P   TY++VV
Sbjct: 317 ----LFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVV 372

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMKEDGL 180
              C   ++  A  ++ EM ++GV P++ TY+       +GRK +  A  ++++M  +  
Sbjct: 373 GAYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRK-SKEAYSVFQRMSREPG 431

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P + +Y+I+I MF    R+DM  +IW+++K  G+ P +  ++ LI+ LC + K ++AC
Sbjct: 432 CEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDAC 491

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLI 266
            YF EM++ G+ P    F  L + L+
Sbjct: 492 TYFQEMLDVGIRPPATMFSNLKQALL 517



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 102/210 (48%), Gaps = 8/210 (3%)

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           +G +    S+++++    +  Q  +  + ++ MK KGI  +  T++ + +      ++++
Sbjct: 150 KGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGIL-SRETFALITRRYARARKVKE 208

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A E   +M + G       +N         ++   A +++ +MK  G   P++ SY IL+
Sbjct: 209 AVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKH-GRFKPDIKSYTILL 267

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
             +     +  + E++ +++  G  PD+ ++ +LI+  C+ +K+ EA + F EM  K + 
Sbjct: 268 EGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIK 327

Query: 253 PQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           P    F TL  G      L + +RLK+ L+
Sbjct: 328 PSPHVFCTLING------LGSEKRLKEALE 351


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 154/318 (48%), Gaps = 48/318 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G C    +D A   L EM E G+EPNVV Y+ LL+G C+      + R+E    
Sbjct: 132 YGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCK------TGRWE---- 181

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  KVF+EM  RGIEPDV  ++ ++    R  + + +   ++ M E+G+ P V TY+ ++
Sbjct: 182 SVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLI 241

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK---------------------EYR 160
             +C  G + +A +L   M   GV P   TYN                         E R
Sbjct: 242 NSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETR 301

Query: 161 GRKD----------------ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
            R D                   A+++   M E+G C  N+ ++N+LIG  + ++++   
Sbjct: 302 VRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENG-CRCNLVAFNLLIGGLLRVHKVKKA 360

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            E+ +++  SGL PD  +Y++LI+G C+ ++ + A  Y  EM  +G+ P+ V +  L + 
Sbjct: 361 MELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKA 420

Query: 265 LIQSDMLRTWRRLKKKLD 282
           +    M+   R L  ++D
Sbjct: 421 MCDQGMMGQARDLFNEMD 438



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 148/339 (43%), Gaps = 52/339 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT+LI   C+  ++  A R +  M ERG+EPNVVTYNVL+N +C+          E ++
Sbjct: 201 MYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCK----------EGSV 250

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFM--KEKGICPTVATYS 118
           R A  +   M  +G++PDV +++ ++   S   +   ++  L  M   E  + P + T++
Sbjct: 251 REALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFN 310

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           SV+  LC  G +  A ++   M  NG   +   +N              AM+L  +M   
Sbjct: 311 SVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASS 370

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP-------------------- 218
           GL  P+  +Y+ILI  F  + +++      ++++  G+ P                    
Sbjct: 371 GL-QPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQ 429

Query: 219 --------------DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
                         D  +Y+ +IHG  +  + K A ++  +MI++GL+P  VT+      
Sbjct: 430 ARDLFNEMDRNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINM 489

Query: 265 LIQSDMLRTWRRLKKKLDEESI-----TFGSEFQNYHFK 298
             +S  L    R+ K++           F S  Q Y  K
Sbjct: 490 FAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAK 528



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 115/235 (48%), Gaps = 12/235 (5%)

Query: 33  NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92
           + V+YN +L  +CR+  L  +    + + +  ++          P+  S++ ++      
Sbjct: 55  DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASR-------PNAISYTTLMRALCAD 107

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
            +   ++  L  M++ G+ P V TY ++++ LC    ++ A ELL EM  +G+ P+   Y
Sbjct: 108 RRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVY 167

Query: 153 NCFFKEY--RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           +C    Y   GR ++ G  K++ +M   G+  P++  Y  LI       ++     + + 
Sbjct: 168 SCLLHGYCKTGRWESVG--KVFEEMSGRGI-EPDVVMYTALIDSLCRHGKVKKAARVMDM 224

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +   GL P++ +Y +LI+ +C++   +EA      M EKG+ P  VT+ TL  GL
Sbjct: 225 MTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGL 279



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 123/268 (45%), Gaps = 14/268 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + S+I+G CKI  +  A +    M E G   N+V +N+L+ G+ R   +H        ++
Sbjct: 309 FNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLR---VH-------KVK 358

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ DEM   G++PD  ++SI+++ + +  Q + +   L+ M+ +G+ P    Y  ++
Sbjct: 359 KAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLL 418

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCP-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           K +C  G +  A +L  EM RN  C   A  Y+          +   A +  + M ++GL
Sbjct: 419 KAMCDQGMMGQARDLFNEMDRN--CKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGL 476

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +P+  +Y+I I MF     +     +   +  SG  PD+  +  LI G   K   ++  
Sbjct: 477 -IPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKIL 535

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           +   EM  K +        T+   L  S
Sbjct: 536 ELTREMTAKDVALDPKIISTIVTSLGAS 563



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 4/174 (2%)

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMV---RNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
           +Y++V+  LC  G ++ A  LL  M    R    P+A +Y    +     + A  A+ L 
Sbjct: 58  SYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAVGLL 117

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
           R M++ G+  P++ +Y  LI        +D   E+ N++  SG+ P++  Y+ L+HG C+
Sbjct: 118 RSMQDCGV-RPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCK 176

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             +W+   + F EM  +G+ P  V +  L   L +   ++   R+   + E  +
Sbjct: 177 TGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGL 230


>gi|147782978|emb|CAN70810.1| hypothetical protein VITISV_034914 [Vitis vinifera]
          Length = 708

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 130/256 (50%), Gaps = 15/256 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L +GWC++       R L EMIE G  P+  TYN  ++  C+             + 
Sbjct: 385 YNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAG----------MVT 434

Query: 62  NAEKVFDEMRVRGI---EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A ++F+ MR +G     P   +++I++    ++ + +     +  M   G+ P V+TY 
Sbjct: 435 EATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYK 494

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            V++ +C  G++E+A + L EM   G  P   TYNCF       K +  A+ LY +M E 
Sbjct: 495 QVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEA 554

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G CVP++H++N+LI MF  +   D   E W+++   G   D D+Y ++I GL    K ++
Sbjct: 555 G-CVPSVHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMED 613

Query: 239 ACQYFVEMIEKGL-LP 253
           AC    E+I KG+ LP
Sbjct: 614 ACFLLDEVINKGIKLP 629



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 11/229 (4%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           + +A+ +F  ++ + ++PD  +++I+   + R   P   +  L  M E G  P   TY++
Sbjct: 364 VEDAQAMFRRVKNK-VKPDANTYNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNT 422

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVC---PSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
            +   C  G + +A EL   M   G     P+A+TY                 KL + M 
Sbjct: 423 AIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMI 482

Query: 177 EDGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
             G+ +P++ +Y  +I GM +A  +++   +   ++   G  PD+ +Y   +  LCE +K
Sbjct: 483 NSGV-LPDVSTYKQVIEGMCLA-GKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKK 540

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLKKK 280
            +EA   +  MIE G +P   TF  L     +         TW  + K+
Sbjct: 541 SEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGAFETWHEMDKR 589



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 10/176 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G C   +++ A +FL EM  +G  P++VTYN  L+ +C            K   
Sbjct: 493 YKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCEN----------KKSE 542

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++  M   G  P V +F++++ ++    +P  + +  + M ++G      TY  ++
Sbjct: 543 EALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMI 602

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + L +C ++EDA  LL E++  G+      ++CF  +     D     KL   M++
Sbjct: 603 EGLFNCNKMEDACFLLDEVINKGIKLPYRKFDCFLMQLSMIGDLQAIHKLSEHMRK 658



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 46/216 (21%)

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGI----CPTVATYSSVVKCLCSCGRIEDAEELLGE 139
           ++L  Y+  H   L      F K+K I     P +   + ++  LC C  +EDA+ +   
Sbjct: 318 MILRKYTEKHLAHLH----KFAKKKKIRVKTQPEINALNLLLDALCKCSLVEDAQAMF-R 372

Query: 140 MVRNGVCPSAETYNC-FFKEYRGRKDANG------------------------------- 167
            V+N V P A TYN  FF   R R  + G                               
Sbjct: 373 RVKNKVKPDANTYNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGM 432

Query: 168 ---AMKLYRQMKEDG--LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS 222
              A +L+  M+  G  +  P   +Y I+I   +  +R +   ++  D+  SG+ PD+ +
Sbjct: 433 VTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVST 492

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
           Y  +I G+C   K +EA ++  EM  KG  P  VT+
Sbjct: 493 YKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTY 528


>gi|225430190|ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial [Vitis vinifera]
 gi|296081989|emb|CBI20994.3| unnamed protein product [Vitis vinifera]
          Length = 597

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 147/279 (52%), Gaps = 15/279 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L+ GW +  ++  AE+    M    V+P VVTY  L+ G CR        R EK I
Sbjct: 253 VYNVLLNGWFRSRKLKRAEQLWRTMKRENVKPTVVTYGTLVEGYCRM------RRSEKAI 306

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN--FMKEKGICPTVATYS 118
               ++  EMR +GIEP+V  ++ ++   + A + + ++  +    + E G  PT++TY+
Sbjct: 307 ----ELVGEMRGKGIEPNVIVYNPIIDSLAEAGRFKEAMGMMERCLVSETG--PTISTYN 360

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           S+VK  C  G +  A ++L  M+  G  P+  TYN FF+ +         M LY +M E 
Sbjct: 361 SLVKGFCKAGDLVGASKVLKMMISRGFDPTLTTYNYFFRYFSRCGKTEEGMNLYTKMIES 420

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G   P+  +Y++LI M     R+D+  ++  +++  G   DL + TML+H LC+  + +E
Sbjct: 421 G-HTPDRLTYHLLIKMMCEEERLDLAVQVSKEMRARGCDLDLATSTMLVHLLCKMHRLEE 479

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A   F +MI +G++PQ +TFE +   L +  +    R+L
Sbjct: 480 AFAEFEDMIRRGIVPQYLTFERMNNALRKRGLTEMARKL 518


>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
          Length = 655

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 144/272 (52%), Gaps = 13/272 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSL+YGWC+  ++  A+  L ++ E G EP++V YN LL G      +           
Sbjct: 263 FTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKM----------V 312

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  EMR +  EP+V SF+ ++       + + ++     M+  G      TY++++
Sbjct: 313 DAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLI 372

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+I    ELL  M++ G  P+  TY      +  +++    ++L  +M++ G C
Sbjct: 373 SGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIG-C 431

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+++ YNI+I +   L  +     +WN+++ +GL P LD++ ++IHG   ++   EAC+
Sbjct: 432 TPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACE 491

Query: 242 YFVEMIEKGLL--PQKVTFETLYRGLIQSDML 271
           +F EM+ +GLL  PQ  T + L   L++++ L
Sbjct: 492 FFKEMVGRGLLSAPQYGTLKELLNSLLRAEKL 523



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 126/265 (47%), Gaps = 11/265 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI   C   +++ A R   EM   G   + VTY  L++G C+             I 
Sbjct: 333 FTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGK----------IS 382

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++ D M  +G  P+  ++  ++  + +  + +  ++ +  M++ G  P +  Y+ V+
Sbjct: 383 KGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVI 442

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
           +  C  G I++   +  EM   G+ P  +T+      +  ++    A + +++M   GL 
Sbjct: 443 RLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLL 502

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P   +   L+   +   +++M +++W+ +   G   ++ ++T+ IH L      KEAC
Sbjct: 503 SAPQYGTLKELLNSLLRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEAC 562

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
            Y ++M++ G++PQ  TF  L RGL
Sbjct: 563 SYCLDMMDAGVMPQPDTFAKLMRGL 587


>gi|115480461|ref|NP_001063824.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|32526676|dbj|BAC79199.1| chloroplast RNA processing 1 -like protein [Oryza sativa Japonica
           Group]
 gi|113632057|dbj|BAF25738.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|125606498|gb|EAZ45534.1| hypothetical protein OsJ_30195 [Oryza sativa Japonica Group]
 gi|215768653|dbj|BAH00882.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 543

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 142/275 (51%), Gaps = 14/275 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+L++ WC+  R++ AER   EM + GV PNV TY  +++ + R             +
Sbjct: 251 LYTTLVHAWCRSGRLNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQ----------V 300

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++  +M   G  P+  +F+ ++  + +A + +  L   N M++ G  P + TY+ +
Sbjct: 301 PRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFL 360

Query: 121 VKCLCSCGR--IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           ++  C  G+  ++ A ++L  M+  G  P   T+N   K      + N A KLY +M+E 
Sbjct: 361 METHCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQEL 420

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
             C PN+ +YN+L+ +F     MDMV  I  D+   G+ P++++Y  LI   C +  WK 
Sbjct: 421 Q-CKPNVVTYNLLMRLFNLEKSMDMVLRIKKDMDAQGVEPNVNTYAALIEAFCGRGNWKR 479

Query: 239 ACQYFVEMI-EKGLLPQKVTFETLYRGLIQSDMLR 272
           A     EM+ EK L P K  ++ +   L ++  LR
Sbjct: 480 AHMTLREMVEEKALKPTKPVYDMVLALLRKAGQLR 514



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 126/291 (43%), Gaps = 25/291 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--RASLHPSERFEK 58
           +Y ++I    K +   +A   L EM ER V    ++  ++L  + R  RA + PSE    
Sbjct: 146 LYAAMIDLLAKHHHFPLARHLLDEMRERSVP---ISAQLILALIRRYVRAEM-PSE---- 197

Query: 59  TIRNAEKVFDEMRVRGI-EPDVTSFSIVLHVYSR---AHQPQLSLDKLNFMKEKGICPTV 114
               A  +F  M   G   PD  + + +L   S+   A + Q   D    +      P V
Sbjct: 198 ----ASDLFRRMEEYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKSV----FTPDV 249

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
             Y+++V   C  GR+ +AE +  EM + GV P+  TY               A +L  Q
Sbjct: 250 VLYTTLVHAWCRSGRLNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQ 309

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK- 233
           M + G C PN  ++N ++   +   R + V ++ N ++  G  PD+ +Y  L+   C K 
Sbjct: 310 MIDSG-CPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKG 368

Query: 234 -QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
                 A +    MI KG +P   TF  + + ++    +   R+L +++ E
Sbjct: 369 QSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQE 419



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 5/154 (3%)

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
           A Y++++  L        A  LL EM    V  SA+      + Y   +  + A  L+R+
Sbjct: 145 ALYAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDLFRR 204

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M+E G   P+  +   L+G  ++  R+    +   D   S   PD+  YT L+H  C   
Sbjct: 205 MEEYGAGAPDPATLASLLGA-LSKKRLASEAQAMFDSYKSVFTPDVVLYTTLVHAWCRSG 263

Query: 235 KWKEACQYFVEMIEKGLLPQKVTF----ETLYRG 264
           +  EA + F EM + G+ P   T+    + +YR 
Sbjct: 264 RLNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRA 297



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 11/134 (8%)

Query: 12  INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMR 71
           +  ++ A +    M E   +PNVVTYN+L+               EK++    ++  +M 
Sbjct: 404 LGNVNAARKLYERMQELQCKPNVVTYNLLMRLF----------NLEKSMDMVLRIKKDMD 453

Query: 72  VRGIEPDVTSFSIVLHVY-SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
            +G+EP+V +++ ++  +  R +  +  +     ++EK + PT   Y  V+  L   G++
Sbjct: 454 AQGVEPNVNTYAALIEAFCGRGNWKRAHMTLREMVEEKALKPTKPVYDMVLALLRKAGQL 513

Query: 131 EDAEELLGEMVRNG 144
              EEL+  MV  G
Sbjct: 514 RRHEELVEMMVDRG 527


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 150/297 (50%), Gaps = 22/297 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G C++  ++ A +   +MI RG+ P+VVTY VL+NG C+  ++  ++ F     
Sbjct: 415 YNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEF----- 469

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                FDEM   G+ PD  +++  +    +      +      M  KG  P V TY+  V
Sbjct: 470 -----FDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFV 524

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +E+A ELL +M+R+G  P   TY  F   +      NG ++  R++  D L 
Sbjct: 525 NGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHM----ENGHLREGREIFYDMLS 580

Query: 182 ---VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
               P + +Y +LI       R+D     + +++  G+ P++ +Y +LI+G C+ +K  +
Sbjct: 581 RGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQ 640

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYR-----GLIQSDMLRTWRRLKKKLDEESITFGS 290
           AC++F+EM EKG+ P K T+  L       G  Q  +    + L K++  +S T G+
Sbjct: 641 ACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCTHGA 697



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 141/289 (48%), Gaps = 17/289 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++++ +CK   +  A   + +M ERG  P+ VT+NVL+NG+ ++  L          +
Sbjct: 240 YNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGEL----------Q 289

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +  EM   G+     +++ ++  Y +      +L     M  +G+ PTVA++++++
Sbjct: 290 QAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIM 349

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++ DA + L +M++  + P   +YN     +    +   A  L  +++   L 
Sbjct: 350 YGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLS 409

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+ +YN LI     L  ++   ++  D+   G+ PD+ +YT+L++G C+      A +
Sbjct: 410 F-NIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKE 468

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ-SDMLRTWRRLKKKLDEESITFG 289
           +F EM+  GL P +  +     G ++  D  + +     KL EE +T G
Sbjct: 469 FFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAF-----KLQEEMLTKG 512



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 128/276 (46%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CK   +  A     EM+ RGV P V ++N ++ G C+          E  + 
Sbjct: 310 YNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCK----------EGKMS 359

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A +   +M  + + PD+ S++ +++ + R      +   L+ ++ + +   + TY++++
Sbjct: 360 DARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLI 419

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +E A +L  +M+  G+ P   TY           +   A + + +M   GL 
Sbjct: 420 DGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLA 479

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y   I   + L       ++  ++   G  PD+ +Y + ++GLC+    +EA +
Sbjct: 480 -PDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGE 538

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
              +MI  G +P  VT+ +     +++  LR  R +
Sbjct: 539 LLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREI 574



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 114/232 (49%), Gaps = 1/232 (0%)

Query: 55  RFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV 114
           R +  +  A +V+  M   GI P VT+++ +LH + +  + Q +LD +  M+E+G  P+ 
Sbjct: 213 RDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSE 272

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            T++ ++  L   G ++ A+ L+ EM + G+  S  TYN     Y  +     A+ L+ +
Sbjct: 273 VTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEE 332

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M   G+  P + S+N ++  F    +M   R+  +D+    L PD+ SY  LI+G C   
Sbjct: 333 MVTRGVS-PTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLG 391

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EA     E+  + L    VT+ TL  GL +   L T  +LK+ +    I
Sbjct: 392 NIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGI 443



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 116/250 (46%), Gaps = 14/250 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTI 60
           YT+ I G  K+     A +   EM+ +G  P+V+TYNV +NG+C+  +L  + E  +K I
Sbjct: 485 YTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMI 544

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R+           G  PD  +++  +H +      +   +    M  +G  PTV TY+ +
Sbjct: 545 RD-----------GHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVL 593

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +      GR++ A     EM   GV P+  TYN     +   +  + A K + +M+E G+
Sbjct: 594 IHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGI 653

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN ++Y ILI     + +      ++  + G  + PD  ++  L+  L +K    +A 
Sbjct: 654 -FPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCTHGALLKKL-DKDYKVQAV 711

Query: 241 QYFVEMIEKG 250
           Q+   +I  G
Sbjct: 712 QFIESLILDG 721



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 101/200 (50%), Gaps = 1/200 (0%)

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           VF++M      PDV + + +L +    +    +L+    M E GI PTV TY++++   C
Sbjct: 189 VFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFC 248

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
             G ++ A +L+ +M   G  PS  T+N        + +   A  L ++M + GL V + 
Sbjct: 249 KGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRV-SP 307

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
           ++YN LI  +     +     +W ++   G+ P + S+  +++G C++ K  +A Q   +
Sbjct: 308 YTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSD 367

Query: 246 MIEKGLLPQKVTFETLYRGL 265
           M++K L+P  +++ TL  G 
Sbjct: 368 MLKKNLMPDIISYNTLIYGF 387



 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 4/118 (3%)

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ + N ++ +    N +    E++  +   G+ P + +Y  ++H  C+  + + A  
Sbjct: 199 LPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALD 258

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
              +M E+G  P +VTF  L  GL +   L+      K L +E    G     Y + P
Sbjct: 259 LVPKMQERGCYPSEVTFNVLINGLSKKGELQQ----AKGLIQEMAKAGLRVSPYTYNP 312


>gi|225427504|ref|XP_002263624.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Vitis vinifera]
          Length = 709

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 130/256 (50%), Gaps = 15/256 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L +GWC++       R L EMIE G  P+  TYN  ++  C+             + 
Sbjct: 412 YNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAG----------MVT 461

Query: 62  NAEKVFDEMRVRGI---EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A ++F+ MR +G     P   +++I++    ++ + +     +  M   G+ P V+TY 
Sbjct: 462 EATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYK 521

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            V++ +C  G++E+A + L EM   G  P   TYNCF       K +  A+ LY +M E 
Sbjct: 522 QVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEA 581

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G CVP++H++N+LI MF  +   D   E W+++   G   D D+Y ++I GL    K ++
Sbjct: 582 G-CVPSVHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMED 640

Query: 239 ACQYFVEMIEKGL-LP 253
           AC    E++ KG+ LP
Sbjct: 641 ACFLLDEVVNKGIKLP 656



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 11/229 (4%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           + +A+ +F  ++ + ++PD  +++I+   + R   P   +  L  M E G  P   TY++
Sbjct: 391 VEDAQAMFRRVKNK-VKPDANTYNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNT 449

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVC---PSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
            +   C  G + +A EL   M   G     P+A+TY                 KL + M 
Sbjct: 450 AIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMI 509

Query: 177 EDGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
             G+ +P++ +Y  +I GM +A  +++   +   ++   G  PD+ +Y   +  LCE +K
Sbjct: 510 NSGV-LPDVSTYKQVIEGMCLA-GKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKK 567

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLKKK 280
            +EA   +  MIE G +P   TF  L     +         TW  + K+
Sbjct: 568 SEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGAFETWHEMDKR 616



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 10/176 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G C   +++ A +FL EM  +G  P++VTYN  L+ +C            K   
Sbjct: 520 YKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCEN----------KKSE 569

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++  M   G  P V +F++++ ++    +P  + +  + M ++G      TY  ++
Sbjct: 570 EALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMI 629

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + L +C ++EDA  LL E+V  G+      ++CF  +     D     KL   M++
Sbjct: 630 EGLFNCNKMEDACFLLDEVVNKGIKLPYRKFDCFLMQLSMIGDLQAIHKLSEHMRK 685



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 46/216 (21%)

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGI----CPTVATYSSVVKCLCSCGRIEDAEELLGE 139
           ++L  Y+  H   L      F K+K I     P +   + ++  LC C  +EDA+ +   
Sbjct: 345 MILRKYTEKHLAHLH----KFAKKKKIRVKTQPEINALNLLLDALCKCSLVEDAQAMF-R 399

Query: 140 MVRNGVCPSAETYNC-FFKEYRGRKDANG------------------------------- 167
            V+N V P A TYN  FF   R R  + G                               
Sbjct: 400 RVKNKVKPDANTYNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGM 459

Query: 168 ---AMKLYRQMKEDG--LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS 222
              A +L+  M+  G  +  P   +Y I+I   +  +R +   ++  D+  SG+ PD+ +
Sbjct: 460 VTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVST 519

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
           Y  +I G+C   K +EA ++  EM  KG  P  VT+
Sbjct: 520 YKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTY 555


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 143/267 (53%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI+G    N+   A   + +M++RG +P++VTY  ++NG+C+R            I 
Sbjct: 191 FTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD----------ID 240

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + ++M    I+ +V  F+ ++    +    ++++D    M+ KGI P V TY+S++
Sbjct: 241 LALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLI 300

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLC+ GR  DA  LL  M+   + P+  T+N     +        A KL+ +M +  + 
Sbjct: 301 NCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSI- 359

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN+LI  F   NR+D  ++++  +      P++ +Y  LI+G C+ ++ ++  +
Sbjct: 360 DPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVE 419

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F EM ++GL+   VT+ T+ +G  Q+
Sbjct: 420 LFREMSQRGLVGNTVTYTTIIQGFFQA 446



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 140/284 (49%), Gaps = 16/284 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI   C   R   A R L  M+E+ + PNVVT+N L++   +          E  + 
Sbjct: 296 YNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFK----------EGKLV 345

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK+ +EM  R I+PD  +++++++ +   ++   +     FM  K   P + TY++++
Sbjct: 346 EAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLI 405

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C C R+ED  EL  EM + G+  +  TY    + +    D + A  +++QM  +   
Sbjct: 406 NGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNR-- 463

Query: 182 VP-NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           VP ++ +Y+IL+    +  ++D    I+  ++ S +  ++  Y  +I G+C+  K  EA 
Sbjct: 464 VPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAW 523

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
             F  +  K   P  VT+ T+  GL    +L+    L +K+ E+
Sbjct: 524 DLFCSLSIK---PDVVTYNTMISGLCSKRLLQEADDLFRKMKED 564



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 133/284 (46%), Gaps = 16/284 (5%)

Query: 12  INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMR 71
           I ++D A    G+M++    P++V +N LL+ V +        +FE  I   E    +M+
Sbjct: 61  IIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKM------NKFELVISLGE----QMQ 110

Query: 72  VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIE 131
             GI  D+ ++SI ++ + R  Q  L+L  L  M + G  P + T SS++   C   RI 
Sbjct: 111 TLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRIS 170

Query: 132 DAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNIL 191
           DA  L+ +MV  G  P   T+            A+ A+ L  QM + G C P++ +Y  +
Sbjct: 171 DAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG-CQPDLVTYGTV 229

Query: 192 IGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 251
           +        +D+   + N ++ + +  ++  +  +I  LC+ +  + A   F EM  KG+
Sbjct: 230 VNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGI 289

Query: 252 LPQKVTFETLYRGLIQ----SDMLRTWRR-LKKKLDEESITFGS 290
            P  VT+ +L   L      SD  R     L+KK++   +TF +
Sbjct: 290 RPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNA 333



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 135/292 (46%), Gaps = 16/292 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+    K+N+ ++      +M   G+  ++ TY++ +N  CRR+ L           
Sbjct: 86  FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSL--------- 136

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V  +M   G EPD+ + S +L+ Y  + +   ++  ++ M E G  P   T+++++
Sbjct: 137 -ALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLI 195

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L    +  +A  L+ +MV+ G  P   TY         R D + A+ L  +M E    
Sbjct: 196 HGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKM-EAARI 254

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+  +N +I        +++  +++ +++  G+ P++ +Y  LI+ LC   +W +A +
Sbjct: 255 KANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASR 314

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITF 288
               M+EK + P  VTF  L     +   L    +L     ++ +D ++IT+
Sbjct: 315 LLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITY 366



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 102/237 (43%), Gaps = 59/237 (24%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           Y  LI G+C  NR+D A++    M+ +   PN+ TYN L+NG C+               
Sbjct: 366 YNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMS 425

Query: 47  -RASLHPSERFEKTIR---------NAEKVFDEMRVRGIEPDVTSFSIVLH--------- 87
            R  +  +  +   I+         +A+ VF +M    +  D+ ++SI+LH         
Sbjct: 426 QRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLD 485

Query: 88  ------VYSRAHQPQLSLDKLNFMKEKGIC------------------PTVATYSSVVKC 123
                  Y +  + +L++   N M E G+C                  P V TY++++  
Sbjct: 486 TALVIFKYLQKSEMELNIFIYNTMIE-GMCKAGKVGEAWDLFCSLSIKPDVVTYNTMISG 544

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           LCS   +++A++L  +M  +G  P++ TYN   +      D   + +L ++M+  G 
Sbjct: 545 LCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGF 601


>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Vitis vinifera]
          Length = 622

 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 144/272 (52%), Gaps = 13/272 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSL+YGWC+  ++  A+  L ++ E G EP++V YN LL G      +           
Sbjct: 230 FTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKM----------V 279

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  EMR +  EP+V SF+ ++       + + ++     M+  G      TY++++
Sbjct: 280 DAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLI 339

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+I    ELL  M++ G  P+  TY      +  +++    ++L  +M++ G C
Sbjct: 340 SGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIG-C 398

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+++ YNI+I +   L  +     +WN+++ +GL P LD++ ++IHG   ++   EAC+
Sbjct: 399 TPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACE 458

Query: 242 YFVEMIEKGLL--PQKVTFETLYRGLIQSDML 271
           +F EM+ +GLL  PQ  T + L   L++++ L
Sbjct: 459 FFKEMVGRGLLSAPQYGTLKELLNSLLRAEKL 490



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 126/265 (47%), Gaps = 11/265 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI   C   +++ A R   EM   G   + VTY  L++G C+             I 
Sbjct: 300 FTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGK----------IS 349

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++ D M  +G  P+  ++  ++  + +  + +  ++ +  M++ G  P +  Y+ V+
Sbjct: 350 KGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVI 409

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
           +  C  G I++   +  EM   G+ P  +T+      +  ++    A + +++M   GL 
Sbjct: 410 RLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLL 469

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P   +   L+   +   +++M +++W+ +   G   ++ ++T+ IH L      KEAC
Sbjct: 470 SAPQYGTLKELLNSLLRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEAC 529

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
            Y ++M++ G++PQ  TF  L RGL
Sbjct: 530 SYCLDMMDAGVMPQPDTFAKLMRGL 554


>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
 gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
          Length = 534

 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 143/284 (50%), Gaps = 12/284 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTSL++GWC+   I  AE    EM   G+ PNV TY+++++ +CR             I
Sbjct: 254 VYTSLVHGWCRAGDISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQ----------I 303

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  VF EM   G  P+  +F+ ++ V+ RA + +  L   N MK       + TY+ +
Sbjct: 304 TRAHDVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFL 363

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C    + +A ++L  M +N   P+A ++N  F+     +D NGA +++ +MKE G 
Sbjct: 364 IETHCKDDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVG- 422

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN  +YNIL+ MF      DM+ ++  ++    + P+ ++Y  LI   C    W  A 
Sbjct: 423 CKPNTVTYNILMRMFAVPKSADMIFKLKKEMDEEEVEPNFNTYRELIALYCGMGHWNHAY 482

Query: 241 QYFVEMI-EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            +F EMI EK + P    ++ +   L ++  L+    L  K+ E
Sbjct: 483 MFFREMIDEKCIKPSMPLYKMVLEELRKAGQLKKHEELVDKMVE 526



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 132/310 (42%), Gaps = 27/310 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA----SLHPSERFE 57
           Y  +I    K+ +  +A   +  M  R VE  VVT+++L+    R      ++H   R E
Sbjct: 151 YNEMIDLAGKVKQFGLAWYLIDLMKARNVEITVVTFSMLVRRYVRAGLAAEAVHAFNRME 210

Query: 58  KTIRNAEKV---------------------FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
               NA+ +                     FD ++ +  EPDV  ++ ++H + RA    
Sbjct: 211 DYGCNADIIAFSNVISILCKKRRAVEAQSFFDNLKHK-FEPDVIVYTSLVHGWCRAGDIS 269

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      MK  GI P V TYS V+  LC  G+I  A ++  EM+  G  P++ T+N   
Sbjct: 270 EAESVFREMKMAGISPNVYTYSIVIDALCRSGQITRAHDVFAEMLDAGCNPNSVTFNNLI 329

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           + +         +++Y QMK    C  ++ +YN LI      + +    ++ N +  +  
Sbjct: 330 RVHLRAGRTEKVLQVYNQMKR-LRCAADLITYNFLIETHCKDDNLGEAIKVLNSMAKNDC 388

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  S+  +   + + Q    A + F  M E G  P  VT+  L R            +
Sbjct: 389 TPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKPNTVTYNILMRMFAVPKSADMIFK 448

Query: 277 LKKKLDEESI 286
           LKK++DEE +
Sbjct: 449 LKKEMDEEEV 458


>gi|356561933|ref|XP_003549231.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g62470, mitochondrial-like [Glycine max]
          Length = 510

 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 147/283 (51%), Gaps = 15/283 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV--CRRASLHPSERFEKT 59
           YT L+ GWC++  +  A R   EMI+RG  P++V +NV+L G+  C++ S          
Sbjct: 206 YTILLSGWCRLKNLLEAGRVWNEMIDRGFNPDIVAHNVMLEGLLKCKKKS---------- 255

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
             +A K+F+ M+ +G  P+V S++I++  + +      +++  + M ++G  P  A Y+ 
Sbjct: 256 --DAIKLFEIMKAKGPSPNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTC 313

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++       +++    LL EM   G  P   TYN   K    +   + A+++Y++M + G
Sbjct: 314 LITGFGRQKKMDMVYSLLKEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSG 373

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  P +H+YN+++  +      +M  EIW+++   G  PD +SY + I GL  + +  EA
Sbjct: 374 I-KPTIHTYNMIMKSYFVTKNYEMGHEIWDEMHPKGCCPDDNSYIVYIGGLIRQDRSGEA 432

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           C+Y  EM+EKG+   K+ +      + ++        L +K++
Sbjct: 433 CKYLEEMLEKGMKALKLDYNKFASDISKTGNAVILEELARKMN 475



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 2/235 (0%)

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           +FD M+  G +  V   + +L   S A   + +      +K++   P++ TY+ ++   C
Sbjct: 156 IFDLMKKYGFKVGVDVINFLLDSLSTAKLGKEAQAVFEKLKDR-FTPSLQTYTILLSGWC 214

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
               + +A  +  EM+  G  P    +N   +     K  + A+KL+  MK  G   PN+
Sbjct: 215 RLKNLLEAGRVWNEMIDRGFNPDIVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPS-PNV 273

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
            SY I+I  F     M    E ++ +   G  PD   YT LI G   ++K         E
Sbjct: 274 RSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYSLLKE 333

Query: 246 MIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
           M E+G  P   T+  L + +    M     R+ KK+ +  I       N   K Y
Sbjct: 334 MRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSY 388



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 115/238 (48%), Gaps = 15/238 (6%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G   +  TYN ++  + R      + +FE  +   E    EM  +G+   + +FSI +  
Sbjct: 95  GFAHDSRTYNFMMCVLGR------TRQFETMVAKLE----EMGEKGL-LTMETFSIAIKA 143

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           ++ A Q +  +   + MK+ G    V   + ++  L +    ++A+ +  E +++   PS
Sbjct: 144 FAEAKQRKKEVGIFDLMKKYGFKVGVDVINFLLDSLSTAKLGKEAQAVF-EKLKDRFTPS 202

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREI 207
            +TY      +   K+   A +++ +M + G   P++ ++N+++ G+     + D ++ +
Sbjct: 203 LQTYTILLSGWCRLKNLLEAGRVWNEMIDRGFN-PDIVAHNVMLEGLLKCKKKSDAIK-L 260

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +  +K  G  P++ SYT++I   C+++   EA +YF  M+++G  P    +  L  G 
Sbjct: 261 FEIMKAKGPSPNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGF 318



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 10/175 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G+ +  ++DM    L EM ERG  P+  TYN L+  +    S H  +      
Sbjct: 310 LYTCLITGFGRQKKMDMVYSLLKEMRERGCPPDGRTYNALIKLM---TSQHMPD------ 360

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A +++ +M   GI+P + ++++++  Y      ++  +  + M  KG CP   +Y   
Sbjct: 361 -DAVRIYKKMIQSGIKPTIHTYNMIMKSYFVTKNYEMGHEIWDEMHPKGCCPDDNSYIVY 419

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           +  L    R  +A + L EM+  G+      YN F  +     +A    +L R+M
Sbjct: 420 IGGLIRQDRSGEACKYLEEMLEKGMKALKLDYNKFASDISKTGNAVILEELARKM 474


>gi|296090648|emb|CBI41047.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 144/272 (52%), Gaps = 13/272 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSL+YGWC+  ++  A+  L ++ E G EP++V YN LL G      +           
Sbjct: 122 FTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKM----------V 171

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  EMR +  EP+V SF+ ++       + + ++     M+  G      TY++++
Sbjct: 172 DAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLI 231

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+I    ELL  M++ G  P+  TY      +  +++    ++L  +M++ G C
Sbjct: 232 SGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIG-C 290

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+++ YNI+I +   L  +     +WN+++ +GL P LD++ ++IHG   ++   EAC+
Sbjct: 291 TPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACE 350

Query: 242 YFVEMIEKGLL--PQKVTFETLYRGLIQSDML 271
           +F EM+ +GLL  PQ  T + L   L++++ L
Sbjct: 351 FFKEMVGRGLLSAPQYGTLKELLNSLLRAEKL 382



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 126/265 (47%), Gaps = 11/265 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI   C   +++ A R   EM   G   + VTY  L++G C+             I 
Sbjct: 192 FTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGK----------IS 241

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++ D M  +G  P+  ++  ++  + +  + +  ++ +  M++ G  P +  Y+ V+
Sbjct: 242 KGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVI 301

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
           +  C  G I++   +  EM   G+ P  +T+      +  ++    A + +++M   GL 
Sbjct: 302 RLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLL 361

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P   +   L+   +   +++M +++W+ +   G   ++ ++T+ IH L      KEAC
Sbjct: 362 SAPQYGTLKELLNSLLRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEAC 421

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
            Y ++M++ G++PQ  TF  L RGL
Sbjct: 422 SYCLDMMDAGVMPQPDTFAKLMRGL 446


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 151/310 (48%), Gaps = 27/310 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G+C   R   AE+ L EM+ER + P+VVTYN L+N   +         FE    
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF-----FE---- 343

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+++DEM  RGI P+  ++S ++  + + ++   +      M  KG  P + T+++++
Sbjct: 344 -AEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLI 402

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI+D  ELL EM   G+     TYN     +    D N A+ L ++M   GLC
Sbjct: 403 DGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLC 462

Query: 182 VPNMHSYNILIGMFM-------ALNRMDMVREIWNDVKGS----GLGPDLDSYTMLIHGL 230
            P++ + + L+           AL    ++++   D+  S    G+ PD+ +Y +LI GL
Sbjct: 463 -PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEES 285
             + K+ EA + + EM  +G++P  +T+ ++  GL +   L    ++      K      
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNV 581

Query: 286 ITFGSEFQNY 295
           +TF +    Y
Sbjct: 582 VTFTTLINGY 591



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 135/275 (49%), Gaps = 22/275 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I G+CK NR+D AE     M  +G  PN++T+N L++G C            K I 
Sbjct: 363 YSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG----------AKRID 412

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++  EM   G+  D T+++ ++H +        +LD L  M   G+CP + T  +++
Sbjct: 413 DGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472

Query: 122 KCLCSCGRIEDAEELLGEMVR-----------NGVCPSAETYNCFFKEYRGRKDANGAMK 170
             LC  G+++DA E+   M +           NGV P  +TYN              A +
Sbjct: 473 DGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEE 532

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           LY +M   G+ VP+  +Y+ +I      +R+D   ++++ +      P++ ++T LI+G 
Sbjct: 533 LYEEMPHRGI-VPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGY 591

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           C+  +  +  + F EM  +G++   +T+ TL  G 
Sbjct: 592 CKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 135/290 (46%), Gaps = 27/290 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------------- 48
           +T+L++G C  +R+  A  F  +M E    PNVVT+  L+NG+CR               
Sbjct: 152 FTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMM 211

Query: 49  --SLHPSERFEKTIRN----------AEKVFDEMR-VRGIEPDVTSFSIVLHVYSRAHQP 95
              L P++    TI +          A  +  +M  V  I P+V  +S ++    +  + 
Sbjct: 212 EDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRH 271

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             + +    M+EKGI P + TY+S++   CS GR  DAE+LL EM+   + P   TYN  
Sbjct: 272 SDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNAL 331

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +        A +LY +M   G+ +PN  +Y+ +I  F   NR+D    ++  +   G
Sbjct: 332 INAFVKEGKFFEAEELYDEMLPRGI-IPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKG 390

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
             P+L ++  LI G C  ++  +  +   EM E GL+    T+ TL  G 
Sbjct: 391 CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 122/257 (47%), Gaps = 10/257 (3%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           ++ R D+      +M  + +  ++ ++N+L+   C  + L            A   F ++
Sbjct: 91  RMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLP----------FALSTFGKI 140

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
              G+ PDV +F+ +LH      +   +LD  + M E    P V T+++++  LC  GRI
Sbjct: 141 TKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRI 200

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
            +A  LL  M+ +G+ P+  TY         + D   A+ L R+M+E    +PN+  Y+ 
Sbjct: 201 VEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSA 260

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           +I       R    + ++ +++  G+ PDL +Y  +I G C   +W +A Q   EM+E+ 
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 251 LLPQKVTFETLYRGLIQ 267
           + P  VT+  L    ++
Sbjct: 321 ISPDVVTYNALINAFVK 337



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 36/230 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           Y +LI+G+  +  ++ A   L EMI  G+ P++VT + LL+G+C    L           
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQ 492

Query: 51  ---------HPSERFEKTIRN----------------AEKVFDEMRVRGIEPDVTSFSIV 85
                    HP    E  ++                 AE++++EM  RGI PD  ++S +
Sbjct: 493 KSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 552

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           +    +  +   +    + M  K   P V T+++++   C  GR++D  EL  EM R G+
Sbjct: 553 IDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGI 612

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
             +A TY      +R   + NGA+ ++++M   G+    +   N+L G++
Sbjct: 613 VANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLW 662



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 97/228 (42%), Gaps = 36/228 (15%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           K + +A  +F +M      P V  F  ++ V  R  +P L +     M+ K I   + ++
Sbjct: 58  KGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSF 117

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + ++KC CSC ++  A    G++ + G+ P   T+                         
Sbjct: 118 NILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLH-------------------- 157

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            GLCV                +R+    + ++ +  +   P++ ++T L++GLC + +  
Sbjct: 158 -GLCVE---------------DRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           EA      M+E GL P ++T+ T+  G+ +     +   L +K++E S
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVS 249



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 10/136 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I G CK +R+D A +    M  +   PNVVT+  L+NG C+             + 
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGR----------VD 598

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++F EM  RGI  +  ++  ++  + +      +LD    M   G+ P   T  +++
Sbjct: 599 DGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658

Query: 122 KCLCSCGRIEDAEELL 137
             L S   ++ A  +L
Sbjct: 659 TGLWSKEELKRAVAML 674


>gi|356560073|ref|XP_003548320.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Glycine max]
          Length = 466

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 130/258 (50%), Gaps = 15/258 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y   ++GWC++       + L EM+E G  P+   YN  ++  C+             + 
Sbjct: 169 YNIFVFGWCRVRNPTRGMKLLEEMVELGHRPDNFAYNTAIDTYCKAG----------MVT 218

Query: 62  NAEKVFDEMRVRGIE---PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A  +F+ MR +G     P   +++I++   ++  + +     +  M   G  P V TY 
Sbjct: 219 EAVDLFEFMRTKGSSISSPTAKTYAIIIVALAQHDRMEECFKLIGHMISSGCLPDVTTYK 278

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            +++ +C CG+I++A + L EM      P   TYNCF K     K +  A+KLY +M E 
Sbjct: 279 EIIEGMCVCGKIDEAYKFLEEMGNKSYRPDIVTYNCFLKVLCDNKKSEDALKLYGRMIEL 338

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
             C+P++ +YN+LI MF  ++  D   E W ++   G  PD+D+Y+++I GL    K ++
Sbjct: 339 N-CIPSVQTYNMLISMFFEIDDPDGAFETWQEMDNRGCRPDIDTYSVMIDGLFNCNKVED 397

Query: 239 ACQYFVEMIEKGL-LPQK 255
           AC    E+I KG+ LP K
Sbjct: 398 ACFLLEEVINKGIKLPYK 415



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 116/289 (40%), Gaps = 60/289 (20%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+   CK   ++ AE    +M  + V+PN  TYN+ + G CR             +R
Sbjct: 135 FNLLLDALCKCCLVEDAETLYKKM-RKTVKPNAETYNIFVFGWCR-------------VR 180

Query: 62  NAE---KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC---PTVA 115
           N     K+ +EM   G  PD  +++  +  Y +A     ++D   FM+ KG     PT  
Sbjct: 181 NPTRGMKLLEEMVELGHRPDNFAYNTAIDTYCKAGMVTEAVDLFEFMRTKGSSISSPTAK 240

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           TY+ ++  L    R+E+  +L+G M+ +G                               
Sbjct: 241 TYAIIIVALAQHDRMEECFKLIGHMISSG------------------------------- 269

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
                C+P++ +Y  +I       ++D   +   ++      PD+ +Y   +  LC+ +K
Sbjct: 270 -----CLPDVTTYKEIIEGMCVCGKIDEAYKFLEEMGNKSYRPDIVTYNCFLKVLCDNKK 324

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD----MLRTWRRLKKK 280
            ++A + +  MIE   +P   T+  L     + D       TW+ +  +
Sbjct: 325 SEDALKLYGRMIELNCIPSVQTYNMLISMFFEIDDPDGAFETWQEMDNR 373



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 10/176 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G C   +ID A +FL EM  +   P++VTYN  L  +C            K   
Sbjct: 277 YKEIIEGMCVCGKIDEAYKFLEEMGNKSYRPDIVTYNCFLKVLCD----------NKKSE 326

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K++  M      P V ++++++ ++     P  + +    M  +G  P + TYS ++
Sbjct: 327 DALKLYGRMIELNCIPSVQTYNMLISMFFEIDDPDGAFETWQEMDNRGCRPDIDTYSVMI 386

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
             L +C ++EDA  LL E++  G+    + ++ F  +     D     ++   M++
Sbjct: 387 DGLFNCNKVEDACFLLEEVINKGIKLPYKKFDSFLMQLSVIGDLQAIHRVSEHMRK 442



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 42/207 (20%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P +  ++ ++  LC C  +EDAE L  +M R  V P+AETYN F   +   ++    MKL
Sbjct: 130 PEINAFNLLLDALCKCCLVEDAETLYKKM-RKTVKPNAETYNIFVFGWCRVRNPTRGMKL 188

Query: 172 YRQMKEDG-------------------------------------LCVPNMHSYNILIGM 194
             +M E G                                     +  P   +Y I+I  
Sbjct: 189 LEEMVELGHRPDNFAYNTAIDTYCKAGMVTEAVDLFEFMRTKGSSISSPTAKTYAIIIVA 248

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
               +RM+   ++   +  SG  PD+ +Y  +I G+C   K  EA ++  EM  K   P 
Sbjct: 249 LAQHDRMEECFKLIGHMISSGCLPDVTTYKEIIEGMCVCGKIDEAYKFLEEMGNKSYRPD 308

Query: 255 KVTFETLYRGLIQS----DMLRTWRRL 277
            VT+    + L  +    D L+ + R+
Sbjct: 309 IVTYNCFLKVLCDNKKSEDALKLYGRM 335


>gi|242094080|ref|XP_002437530.1| hypothetical protein SORBIDRAFT_10g028820 [Sorghum bicolor]
 gi|241915753|gb|EER88897.1| hypothetical protein SORBIDRAFT_10g028820 [Sorghum bicolor]
          Length = 540

 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 145/279 (51%), Gaps = 15/279 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC--RRASLHPSERFEK 58
           +Y  L+ GW +  R+D  E+    M + GV P VVTY   ++  C  RR           
Sbjct: 186 VYNILLNGWSRARRLDKVEKLWAAMRDEGVRPTVVTYGTFIDAYCVMRRPD--------- 236

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
               A  + D+MR  GI+ ++ + + +++  ++A +   +   L      G+ P ++T++
Sbjct: 237 ---QAMTLLDQMREEGIQANLLTCNPIVYALAQAGRFGDAHKVLEKFPLYGVSPNISTFN 293

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           S+V   C  G +  A  +L  M+  G+ P+A TYN FF  +   +     M LY +M  +
Sbjct: 294 SLVFGYCKHGDLAGASGVLKAMLGRGISPTARTYNYFFMVFSRNRSIELGMNLYVKMVSN 353

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G   P+  +Y++LI M    NR+++  ++  +++ +G  PD  + TMLIH LC +  ++E
Sbjct: 354 GYA-PDQFTYHLLIKMLCEANRLELTLQMLQEMRNNGFEPDQATSTMLIHLLCRRHHFEE 412

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A   F +M E+G++PQ +T+  L + L +  +++  ++L
Sbjct: 413 AFAEFEQMFERGIVPQYITYRMLMKELKRLGLVKLVQKL 451



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 1/157 (0%)

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
           ++ G  P V  Y+ ++       R++  E+L   M   GV P+  TY  F   Y   +  
Sbjct: 176 EDGGWAPDVRVYNILLNGWSRARRLDKVEKLWAAMRDEGVRPTVVTYGTFIDAYCVMRRP 235

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
           + AM L  QM+E+G+   N+ + N ++       R     ++       G+ P++ ++  
Sbjct: 236 DQAMTLLDQMREEGIQA-NLLTCNPIVYALAQAGRFGDAHKVLEKFPLYGVSPNISTFNS 294

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
           L+ G C+      A      M+ +G+ P   T+   +
Sbjct: 295 LVFGYCKHGDLAGASGVLKAMLGRGISPTARTYNYFF 331



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 5/126 (3%)

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK-EDGLCVPNMHSYNILIGMFMALNRMD 202
            V P   T +   KE   R     A +L  Q++ EDG   P++  YNIL+  +    R+D
Sbjct: 146 AVSPLILTVDALCKEGHPR----AAARLVAQVRREDGGWAPDVRVYNILLNGWSRARRLD 201

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
            V ++W  ++  G+ P + +Y   I   C  ++  +A     +M E+G+    +T   + 
Sbjct: 202 KVEKLWAAMRDEGVRPTVVTYGTFIDAYCVMRRPDQAMTLLDQMREEGIQANLLTCNPIV 261

Query: 263 RGLIQS 268
             L Q+
Sbjct: 262 YALAQA 267



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/198 (20%), Positives = 81/198 (40%), Gaps = 7/198 (3%)

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR--NGVCPSAETYNCFFKEYRGRKD 164
           E  + P + T    V  LC  G    A  L+ ++ R   G  P    YN     +   + 
Sbjct: 144 EAAVSPLILT----VDALCKEGHPRAAARLVAQVRREDGGWAPDVRVYNILLNGWSRARR 199

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
            +   KL+  M+++G+  P + +Y   I  +  + R D    + + ++  G+  +L +  
Sbjct: 200 LDKVEKLWAAMRDEGV-RPTVVTYGTFIDAYCVMRRPDQAMTLLDQMREEGIQANLLTCN 258

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            +++ L +  ++ +A +   +    G+ P   TF +L  G  +   L     + K +   
Sbjct: 259 PIVYALAQAGRFGDAHKVLEKFPLYGVSPNISTFNSLVFGYCKHGDLAGASGVLKAMLGR 318

Query: 285 SITFGSEFQNYHFKPYRR 302
            I+  +   NY F  + R
Sbjct: 319 GISPTARTYNYFFMVFSR 336


>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 142/282 (50%), Gaps = 10/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GW +   +   +    EM + G EP+VVTY +L+N  C+           +   
Sbjct: 254 YTILLEGWGQEKNLLKLDEVYREMKDEGFEPDVVTYGILINAYCK----------VRKYD 303

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F EM  +  +P    F  +++      +   +L+     K  G  P   TY++VV
Sbjct: 304 DAIELFREMESKNCQPSPHIFCTLINGLGSVRRLSEALEFFRRSKASGFAPETPTYNAVV 363

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI+DA  ++ EM ++GV P++ TY+         +    A  ++ +M  +  C
Sbjct: 364 GAYCWSMRIDDAYRMVDEMRKSGVGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEEC 423

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +Y+I++ MF  +++++   ++W+ +K  G+ P +  +++LI+ LC + K   AC+
Sbjct: 424 EPTVSTYDIIVRMFCNMDKVESAIKVWDRMKAKGVHPGMHMFSILINSLCHENKLDIACK 483

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           YF EM++ G+ P    F  L + LI+     T   L +K+D+
Sbjct: 484 YFQEMLDVGIRPPAALFSHLKQALIEDGRKDTVVLLAQKIDK 525



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 116/229 (50%), Gaps = 8/229 (3%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKL-NFMKEKGICPTVAT 116
           + + +A+ VFD+M++R   PD+ S++I+L  + +  +  L LD++   MK++G  P V T
Sbjct: 230 RQVLSAQNVFDKMKIRRFVPDIKSYTILLEGWGQ-EKNLLKLDEVYREMKDEGFEPDVVT 288

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y  ++   C   + +DA EL  EM      PS   +          +  + A++ +R+ K
Sbjct: 289 YGILINAYCKVRKYDDAIELFREMESKNCQPSPHIFCTLINGLGSVRRLSEALEFFRRSK 348

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G   P   +YN ++G +    R+D    + ++++ SG+GP+  +Y +++H L + +K 
Sbjct: 349 ASGFA-PETPTYNAVVGAYCWSMRIDDAYRMVDEMRKSGVGPNSRTYDIILHHLIKAEKT 407

Query: 237 KEACQYFVEM-IEKGLLPQKVTFETLYRGLIQSD----MLRTWRRLKKK 280
            EA   F +M  E+   P   T++ + R     D     ++ W R+K K
Sbjct: 408 TEAFSVFEKMSSEEECEPTVSTYDIIVRMFCNMDKVESAIKVWDRMKAK 456



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 99/210 (47%), Gaps = 6/210 (2%)

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           +G   +  S++ ++    +  Q  +  + +N MK KG+  T  T++ + +     G++++
Sbjct: 141 KGFMYNTESYNALIDSLGKIKQFNMIWNLVNDMKRKGVL-TKETFALISRRYARSGKVKE 199

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A     +M + G+   +  +N         +    A  ++ +MK     VP++ SY IL+
Sbjct: 200 AMNTFEKMEKFGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKMKIRRF-VPDIKSYTILL 258

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
             +     +  + E++ ++K  G  PD+ +Y +LI+  C+ +K+ +A + F EM  K   
Sbjct: 259 EGWGQEKNLLKLDEVYREMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESKNCQ 318

Query: 253 PQKVTFETLYRGLIQ----SDMLRTWRRLK 278
           P    F TL  GL      S+ L  +RR K
Sbjct: 319 PSPHIFCTLINGLGSVRRLSEALEFFRRSK 348


>gi|297821162|ref|XP_002878464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324302|gb|EFH54723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 628

 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 141/250 (56%), Gaps = 11/250 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GWC++  +  A R   +MI++G++P++V +NV+L G+ R           +   
Sbjct: 310 YTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLR----------SRKKS 359

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+F  M+ +G  P+V S++I++  + +    + +++  + M + G+ P  A Y+ ++
Sbjct: 360 DAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLI 419

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               +  +++   ELL EM   G  P  +TYN   K    +K    A ++Y +M ++ + 
Sbjct: 420 TGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEI- 478

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++H++N+++  +      +M   +W+++   G+ PD +SYT+LI GL  + K +EAC+
Sbjct: 479 EPSIHTFNMIMKSYFMARNYEMGSAVWDEMIKKGICPDDNSYTVLIRGLIGEGKSREACR 538

Query: 242 YFVEMIEKGL 251
           Y  EM++KG+
Sbjct: 539 YLEEMLDKGM 548



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 8/229 (3%)

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH---QPQLSLDKLNFMKEKGICPTVATY 117
           + A  +F+ M+    +  V + + +L    RA    + Q+  DKL   KE+   P + TY
Sbjct: 255 KKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKL---KER-FTPNMMTY 310

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + ++   C    + +A  +  +M+  G+ P    +N   +     +  + A+KL+  MK 
Sbjct: 311 TVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKS 370

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G C PN+ SY I+I  F   + M+   E ++D+  SGL PD   YT LI G   ++K  
Sbjct: 371 KGPC-PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLD 429

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              +   EM EKG  P   T+  L + +    M     R+  K+ +  I
Sbjct: 430 TVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEI 478



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 95/214 (44%), Gaps = 11/214 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I  +CK + ++ A  +  +M++ G++P+   Y  L+ G             +K + 
Sbjct: 380 YTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGT----------QKKLD 429

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++  EM+ +G  PD  +++ ++ + +    P+ +    N M +  I P++ T++ ++
Sbjct: 430 TVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIM 489

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K        E    +  EM++ G+CP   +Y    +   G   +  A +   +M + G+ 
Sbjct: 490 KSYFMARNYEMGSAVWDEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMK 549

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            P +  YN     F    + ++  E+    K SG
Sbjct: 550 TP-LIDYNKFAADFHKGGQPEIFEELAQRAKFSG 582



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 10/159 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G+    ++D     L EM E+G  P+  TYN L+  +            +K  
Sbjct: 414 VYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMAN----------QKMP 463

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A +++++M    IEP + +F++++  Y  A   ++     + M +KGICP   +Y+ +
Sbjct: 464 EHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGSAVWDEMIKKGICPDDNSYTVL 523

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           ++ L   G+  +A   L EM+  G+      YN F  ++
Sbjct: 524 IRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFAADF 562



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 3/201 (1%)

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           +G   D  +++ ++ + ++  Q +  +  L  M  KG+  T+ T++  +K   +    + 
Sbjct: 198 QGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLL-TMETFTIAMKAFAAAKERKK 256

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A  +   M +       ET NC        K    A  L+ ++KE     PNM +Y +L+
Sbjct: 257 AVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKER--FTPNMMTYTVLL 314

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
             +  +  +     IWND+   GL PD+ ++ +++ GL   +K  +A + F  M  KG  
Sbjct: 315 NGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPC 374

Query: 253 PQKVTFETLYRGLIQSDMLRT 273
           P   ++  + R   +   + T
Sbjct: 375 PNVRSYTIMIRDFCKQSSMET 395


>gi|297836334|ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331889|gb|EFH62308.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 755

 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 140/264 (53%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+C + R D A +F G +++ G  P+++TY +L+ G C +           +I 
Sbjct: 478 YTTMIDGYCTLGRTDKAFQFFGALLKSGNPPSLITYTLLI-GACSKFG---------SIS 527

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE VF  M+  G+ PDV +++ +++ Y + HQ     + ++ M+  GI P VATY+ ++
Sbjct: 528 DAESVFRIMKTEGLHPDVVTYNNLMYGYGKTHQLNKVFELIDEMRSAGISPDVATYNILI 587

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +   G +++A E++ E++R G  PSA  +         R D   A  L+  M  D   
Sbjct: 588 HSMVVRGYVDEANEIISELIRRGFVPSALAFTDVIGGLSKRGDFQEAFILWFYMA-DLRV 646

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ + + L+  +    RM+    +++ +  +GL PD+  Y  LIHG C     ++AC+
Sbjct: 647 KPDVVTCSALLHGYCRAQRMEKAIVLFDKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACE 706

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
               M+++G+LP + T   L  GL
Sbjct: 707 LIGLMVQRGMLPNESTHHALVVGL 730



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 112/259 (43%), Gaps = 14/259 (5%)

Query: 6   IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEK 65
           I G+CK+ + + A + +     R   PN+  Y+  L+ +C    +            A  
Sbjct: 415 IDGFCKVGKPEEAIKLIHSFRLR---PNIFVYSSFLSNICSTGDM----------LRAST 461

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           +F E+   G+ PD   ++ ++  Y    +   +      + + G  P++ TY+ ++    
Sbjct: 462 IFQEIFELGLLPDCYCYTTMIDGYCTLGRTDKAFQFFGALLKSGNPPSLITYTLLIGACS 521

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
             G I DAE +   M   G+ P   TYN     Y      N   +L  +M+  G+  P++
Sbjct: 522 KFGSISDAESVFRIMKTEGLHPDVVTYNNLMYGYGKTHQLNKVFELIDEMRSAGIS-PDV 580

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
            +YNILI   +    +D   EI +++   G  P   ++T +I GL ++  ++EA   +  
Sbjct: 581 ATYNILIHSMVVRGYVDEANEIISELIRRGFVPSALAFTDVIGGLSKRGDFQEAFILWFY 640

Query: 246 MIEKGLLPQKVTFETLYRG 264
           M +  + P  VT   L  G
Sbjct: 641 MADLRVKPDVVTCSALLHG 659



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/329 (19%), Positives = 129/329 (39%), Gaps = 78/329 (23%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           SL+    + + +++A  F+  M+ RG   N    ++ +   C          F+K     
Sbjct: 308 SLVEEILRAHGLELAREFVEHMLSRGRHLNAALLSLFIRKYCSDG------YFDK----G 357

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC------------ 111
            ++   M+  GI PD+ +F++ +    +A   + +   L  +K  GI             
Sbjct: 358 WELLMGMKDYGIRPDIVAFTVFIDKLCKAGFLREATSVLFKLKLFGISQDSVSVSSVIDG 417

Query: 112 --------------------PTVATYSSVVKCLCSC------------------------ 127
                               P +  YSS +  +CS                         
Sbjct: 418 FCKVGKPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCYC 477

Query: 128 -----------GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
                      GR + A +  G ++++G  PS  TY             + A  ++R MK
Sbjct: 478 YTTMIDGYCTLGRTDKAFQFFGALLKSGNPPSLITYTLLIGACSKFGSISDAESVFRIMK 537

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
            +GL  P++ +YN L+  +   ++++ V E+ ++++ +G+ PD+ +Y +LIH +  +   
Sbjct: 538 TEGLH-PDVVTYNNLMYGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYV 596

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            EA +   E+I +G +P  + F  +  GL
Sbjct: 597 DEANEIISELIRRGFVPSALAFTDVIGGL 625



 Score = 42.0 bits (97), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI+G+C +  I+ A   +G M++RG+ PN  T++ L+ G+         +RF  + 
Sbjct: 687 LYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVVGL-------EGKRFMNSE 739

Query: 61  RNAEKVFDEMRV 72
            +A  + +E+ V
Sbjct: 740 EHASMLLEEIVV 751


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 146/290 (50%), Gaps = 30/290 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK+     A R LG M+++  +PNV  YN +++ +C+          ++ + 
Sbjct: 169 YGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCK----------DRQVT 218

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM  +GI PD+ +++ ++H      + +     LN M +  I P V ++++VV
Sbjct: 219 EAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVV 278

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++ +A +++ +M++ GV P+  TY      +    + + A+K++  M   G C
Sbjct: 279 DALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKG-C 337

Query: 182 VPNMHSYNILIGMFMALNR-------------------MDMVREIWNDVKGSGLGPDLDS 222
           +PN+ SYN LI  +  + R                   MD   ++++ +   G  P++ S
Sbjct: 338 MPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVIS 397

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
           Y  LI+G C+ Q+  +A   F EM  + L+P  VT+ TL  GL   + L+
Sbjct: 398 YNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQ 447



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 137/277 (49%), Gaps = 10/277 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK--- 58
           YT+L+ G C ++ +D A +    M+ +G  PNV++YN L+NG C+   +  +  +     
Sbjct: 309 YTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMD 368

Query: 59  ------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP 112
                  +  A KVFD M  +G  P+V S++ +++ Y +  +   ++     M  + + P
Sbjct: 369 XXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIP 428

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
              TYS+++  LC   R++DA  L  EMV     P+  TY          +    AM L 
Sbjct: 429 DTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALL 488

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
           + ++   L  P++   NI I        ++  R++++++   GL PD+ +Y+++I+GLC 
Sbjct: 489 KAIEGSNL-DPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCR 547

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           +    EA + F EM E G       + T+ RG ++++
Sbjct: 548 RGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNN 584



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 143/320 (44%), Gaps = 30/320 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +++   CK  ++  A   + +MI+RGVEPNVVTY  L++G C  + +           
Sbjct: 274 FNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMD---------- 323

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ---------------LSLDK----L 102
            A KVFD M  +G  P+V S++ +++ Y +  +                 L++D+     
Sbjct: 324 EAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVF 383

Query: 103 NFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR 162
           + M  KG  P V +Y++++   C   RI+ A  L GEM R  + P   TY+         
Sbjct: 384 DTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHV 443

Query: 163 KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS 222
           +    A+ L+ +M      +PN+ +Y IL+        +     +   ++GS L PD+  
Sbjct: 444 ERLQDAIALFHEMVACSQ-IPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQV 502

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
             + I G+C   + + A   F  +  KGL P   T+  +  GL +  +L    +L +++D
Sbjct: 503 NNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMD 562

Query: 283 EESITFGSEFQNYHFKPYRR 302
           E   T      N   + + R
Sbjct: 563 ENGCTLNGCIYNTITRGFLR 582



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 122/260 (46%), Gaps = 11/260 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C +NR+  A   L ++++ G +P+  T+  L+ G+C           E  I  A 
Sbjct: 102 LINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIC----------VEGKIGEAL 151

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +FD+M   G  PDV ++  +++   +      ++  L  M +K   P V  Y++++  L
Sbjct: 152 HLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSL 211

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C   ++ +A  L  EMV  G+ P   TYN          +      L  +M +  + +P+
Sbjct: 212 CKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKI-MPD 270

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + S+N ++       ++    ++ + +   G+ P++ +YT L+ G C   +  EA + F 
Sbjct: 271 VVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFD 330

Query: 245 EMIEKGLLPQKVTFETLYRG 264
            M+ KG +P  +++ TL  G
Sbjct: 331 TMVCKGCMPNVISYNTLING 350



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 114/253 (45%), Gaps = 11/253 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N ID A      M+     P+ V +N LL  + +        +   T+ +     D    
Sbjct: 40  NTIDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKM-------KHHSTLLSLSHQMDSF-- 90

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
            GI P++ +  I+++ +   ++   +   L  + + G  P  AT++++++ +C  G+I +
Sbjct: 91  -GIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGE 149

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A  L  +M+  G  P   TY           + + A++L   M +   C PN+ +YN +I
Sbjct: 150 ALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKN-CQPNVFAYNTII 208

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                  ++     +++++   G+ PD+ +Y  LIH LC   +WK       EM++  ++
Sbjct: 209 DSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIM 268

Query: 253 PQKVTFETLYRGL 265
           P  V+F T+   L
Sbjct: 269 PDVVSFNTVVDAL 281



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 25/204 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y +LI G+CKI RID A    GEM  + + P+ VTY+ L++G+C    L  +        
Sbjct: 398 YNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMV 457

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                + +  A  +   +    ++PD+   +I +    RA + +
Sbjct: 458 ACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELE 517

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + D  + +  KG+ P V TYS ++  LC  G +++A +L  EM  NG   +   YN   
Sbjct: 518 AARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTIT 577

Query: 157 KEYRGRKDANGAMKLYRQMKEDGL 180
           + +    + + A++L ++M   G 
Sbjct: 578 RGFLRNNETSRAIQLLQEMVARGF 601


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 151/310 (48%), Gaps = 27/310 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G+C   R   AE+ L EM+ER + P+VVTYN L+N   +         FE    
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF-----FE---- 343

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+++DEM  RGI P+  ++S ++  + + ++   +      M  KG  P + T+++++
Sbjct: 344 -AEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLI 402

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI+D  ELL EM   G+     TYN     +    D N A+ L ++M   GLC
Sbjct: 403 DGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLC 462

Query: 182 VPNMHSYNILIGMFM-------ALNRMDMVREIWNDVKGS----GLGPDLDSYTMLIHGL 230
            P++ + + L+           AL    ++++   D+  S    G+ PD+ +Y +LI GL
Sbjct: 463 -PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEES 285
             + K+ EA + + EM  +G++P  +T+ ++  GL +   L    ++      K      
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNV 581

Query: 286 ITFGSEFQNY 295
           +TF +    Y
Sbjct: 582 VTFTTLINGY 591



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 135/275 (49%), Gaps = 22/275 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I G+CK NR+D AE     M  +G  PN++T+N L++G C            K I 
Sbjct: 363 YSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG----------AKRID 412

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++  EM   G+  D T+++ ++H +        +LD L  M   G+CP + T  +++
Sbjct: 413 DGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472

Query: 122 KCLCSCGRIEDAEELLGEMVR-----------NGVCPSAETYNCFFKEYRGRKDANGAMK 170
             LC  G+++DA E+   M +           NGV P  +TYN              A +
Sbjct: 473 DGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEE 532

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           LY +M   G+ VP+  +Y+ +I      +R+D   ++++ +      P++ ++T LI+G 
Sbjct: 533 LYEEMPHRGI-VPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGY 591

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           C+  +  +  + F EM  +G++   +T+ TL  G 
Sbjct: 592 CKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 146/314 (46%), Gaps = 34/314 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRAS-------LHPSE 54
           +T+L+ G C+  RI  A   L  M+E G++P  +TY  +++G+C++         L   E
Sbjct: 187 FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKME 246

Query: 55  RFEKTIRN-------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                I N                   A+ +F EM+ +GI PD+ +++ ++  +  + + 
Sbjct: 247 EVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRW 306

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +   L  M E+ I P V TY++++      G+  +AEEL  EM+  G+ P+  TY+  
Sbjct: 307 SDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSM 366

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +  +   + A  ++  M   G C PN+ ++N LI  +    R+D   E+ +++  +G
Sbjct: 367 IDGFCKQNRLDAAEHMFYLMATKG-CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG 425

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS------- 268
           L  D  +Y  LIHG         A     EMI  GL P  VT +TL  GL  +       
Sbjct: 426 LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDAL 485

Query: 269 DMLRTWRRLKKKLD 282
           +M +  ++ KK LD
Sbjct: 486 EMFKVMQKSKKDLD 499



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 133/290 (45%), Gaps = 27/290 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------------- 48
           + +L++G C  +R+  A     +M E    PNVVT+  L+NG+CR               
Sbjct: 152 FNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMM 211

Query: 49  --SLHPSERFEKTIRN----------AEKVFDEM-RVRGIEPDVTSFSIVLHVYSRAHQP 95
              L P++    TI +          A  +  +M  V  I P+V  +S ++    +  + 
Sbjct: 212 EDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRH 271

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             + +    M+EKGI P + TY+S++   CS GR  DAE+LL EM+   + P   TYN  
Sbjct: 272 SDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNAL 331

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +        A +LY +M   G+ +PN  +Y+ +I  F   NR+D    ++  +   G
Sbjct: 332 INAFVKEGKFFEAEELYDEMLPRGI-IPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKG 390

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
             P+L ++  LI G C  ++  +  +   EM E GL+    T+ TL  G 
Sbjct: 391 CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 121/257 (47%), Gaps = 10/257 (3%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           ++ R D+      +M  + +  ++ ++ +L+   C  + L            A   F ++
Sbjct: 91  RMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLP----------FALSTFGKI 140

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
              G+ PDV +F+ +LH      +   +L+  + M E    P V T+++++  LC  GRI
Sbjct: 141 TKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRI 200

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
            +A  LL  M+ +G+ P+  TY         + D   A+ L R+M+E    +PN+  Y+ 
Sbjct: 201 VEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSA 260

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           +I       R    + ++ +++  G+ PDL +Y  +I G C   +W +A Q   EM+E+ 
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 251 LLPQKVTFETLYRGLIQ 267
           + P  VT+  L    ++
Sbjct: 321 ISPDVVTYNALINAFVK 337



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 36/230 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           Y +LI+G+  +  ++ A   L EMI  G+ P++VT + LL+G+C    L           
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQ 492

Query: 51  ---------HPSERFEKTIRN----------------AEKVFDEMRVRGIEPDVTSFSIV 85
                    HP    E  ++                 AE++++EM  RGI PD  ++S +
Sbjct: 493 KSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 552

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           +    +  +   +    + M  K   P V T+++++   C  GR++D  EL  EM R G+
Sbjct: 553 IDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGI 612

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
             +A TY      +R   + NGA+ ++++M   G+    +   N+L G++
Sbjct: 613 VANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLW 662



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 105/266 (39%), Gaps = 37/266 (13%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           K + +A  +F +M      P V  F  ++ V  R  +P L +     M+ K I   + ++
Sbjct: 58  KGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSF 117

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + ++KC CSC ++  A    G++ + G+ P   T+N            + A+ L+ QM E
Sbjct: 118 TILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFE 177

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK---- 233
              C PN+ ++  L+       R+     + + +   GL P   +Y  ++ G+C+K    
Sbjct: 178 T-TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV 236

Query: 234 --------------------------------QKWKEACQYFVEMIEKGLLPQKVTFETL 261
                                            +  +A   F EM EKG+ P   T+ ++
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 262 YRGLIQSDMLRTWRRLKKKLDEESIT 287
             G   S       +L +++ E  I+
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKIS 322



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 10/136 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I G CK +R+D A +    M  +   PNVVT+  L+NG C+             + 
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGR----------VD 598

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++F EM  RGI  +  ++  ++  + +      +LD    M   G+ P   T  +++
Sbjct: 599 DGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658

Query: 122 KCLCSCGRIEDAEELL 137
             L S   ++ A  +L
Sbjct: 659 TGLWSKEELKRAVAML 674


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 151/310 (48%), Gaps = 27/310 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G+C   R   AE+ L EM+ER + P+VVTYN L+N   +         FE    
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF-----FE---- 343

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+++DEM  RGI P+  ++S ++  + + ++   +      M  KG  P + T+++++
Sbjct: 344 -AEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLI 402

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI+D  ELL EM   G+     TYN     +    D N A+ L ++M   GLC
Sbjct: 403 DGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLC 462

Query: 182 VPNMHSYNILIGMFM-------ALNRMDMVREIWNDVKGS----GLGPDLDSYTMLIHGL 230
            P++ + + L+           AL    ++++   D+  S    G+ PD+ +Y +LI GL
Sbjct: 463 -PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEES 285
             + K+ EA + + EM  +G++P  +T+ ++  GL +   L    ++      K      
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNV 581

Query: 286 ITFGSEFQNY 295
           +TF +    Y
Sbjct: 582 VTFTTLINGY 591



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 135/275 (49%), Gaps = 22/275 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I G+CK NR+D AE     M  +G  PN++T+N L++G C            K I 
Sbjct: 363 YSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG----------AKRID 412

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++  EM   G+  D T+++ ++H +        +LD L  M   G+CP + T  +++
Sbjct: 413 DGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472

Query: 122 KCLCSCGRIEDAEELLGEMVR-----------NGVCPSAETYNCFFKEYRGRKDANGAMK 170
             LC  G+++DA E+   M +           NGV P  +TYN              A +
Sbjct: 473 DGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEE 532

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           LY +M   G+ VP+  +Y+ +I      +R+D   ++++ +      P++ ++T LI+G 
Sbjct: 533 LYEEMPHRGI-VPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGY 591

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           C+  +  +  + F EM  +G++   +T+ TL  G 
Sbjct: 592 CKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 130/264 (49%), Gaps = 10/264 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+L+ G C+  RI  A   L  M+E G++P  +TY  +++G+C++     +      +R
Sbjct: 187 FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNL---LR 243

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             E+V        I P+V  +S ++    +  +   + +    M+EKGI P + TY+S++
Sbjct: 244 KMEEV------SHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMI 297

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              CS GR  DAE+LL EM+   + P   TYN     +        A +LY +M   G+ 
Sbjct: 298 VGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI- 356

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN  +Y+ +I  F   NR+D    ++  +   G  P+L ++  LI G C  ++  +  +
Sbjct: 357 IPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGME 416

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
              EM E GL+    T+ TL  G 
Sbjct: 417 LLHEMTETGLVADTTTYNTLIHGF 440



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 122/257 (47%), Gaps = 10/257 (3%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           ++ R D+      +M  + +  ++ ++N+L+   C  + L            A   F ++
Sbjct: 91  RMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLP----------FALSTFGKI 140

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
              G+ PDV +F+ +LH      +   +L+  + M E    P V T+++++  LC  GRI
Sbjct: 141 TKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRI 200

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
            +A  LL  M+ +G+ P+  TY         + D   A+ L R+M+E    +PN+  Y+ 
Sbjct: 201 VEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSA 260

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           +I       R    + ++ +++  G+ PDL +Y  +I G C   +W +A Q   EM+E+ 
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 251 LLPQKVTFETLYRGLIQ 267
           + P  VT+  L    ++
Sbjct: 321 ISPDVVTYNALINAFVK 337



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 36/230 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           Y +LI+G+  +  ++ A   L EMI  G+ P++VT + LL+G+C    L           
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQ 492

Query: 51  ---------HPSERFEKTIRN----------------AEKVFDEMRVRGIEPDVTSFSIV 85
                    HP    E  ++                 AE++++EM  RGI PD  ++S +
Sbjct: 493 KSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 552

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           +    +  +   +    + M  K   P V T+++++   C  GR++D  EL  EM R G+
Sbjct: 553 IDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGI 612

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
             +A TY      +R   + NGA+ ++++M   G+    +   N+L G++
Sbjct: 613 VANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLW 662



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 104/266 (39%), Gaps = 37/266 (13%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           K + +A  +F +M      P V  F  ++ V  R  +P L +     M+ K I   + ++
Sbjct: 58  KGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSF 117

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + ++KC CSC ++  A    G++ + G+ P   T+             + A+ L+ QM E
Sbjct: 118 NILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFE 177

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK---- 233
              C PN+ ++  L+       R+     + + +   GL P   +Y  ++ G+C+K    
Sbjct: 178 T-TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV 236

Query: 234 --------------------------------QKWKEACQYFVEMIEKGLLPQKVTFETL 261
                                            +  +A   F EM EKG+ P   T+ ++
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 262 YRGLIQSDMLRTWRRLKKKLDEESIT 287
             G   S       +L +++ E  I+
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKIS 322



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 10/136 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I G CK +R+D A +    M  +   PNVVT+  L+NG C+             + 
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGR----------VD 598

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++F EM  RGI  +  ++  ++  + +      +LD    M   G+ P   T  +++
Sbjct: 599 DGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658

Query: 122 KCLCSCGRIEDAEELL 137
             L S   ++ A  +L
Sbjct: 659 TGLWSKEELKRAVAML 674


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 151/310 (48%), Gaps = 27/310 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G+C   R   AE+ L EM+ER + P+VVTYN L+N   +         FE    
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF-----FE---- 343

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+++DEM  RGI P+  ++S ++  + + ++   +      M  KG  P + T+++++
Sbjct: 344 -AEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLI 402

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI+D  ELL EM   G+     TYN     +    D N A+ L ++M   GLC
Sbjct: 403 DGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLC 462

Query: 182 VPNMHSYNILIGMFM-------ALNRMDMVREIWNDVKGS----GLGPDLDSYTMLIHGL 230
            P++ + + L+           AL    ++++   D+  S    G+ PD+ +Y +LI GL
Sbjct: 463 -PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEES 285
             + K+ EA + + EM  +G++P  +T+ ++  GL +   L    ++      K      
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNV 581

Query: 286 ITFGSEFQNY 295
           +TF +    Y
Sbjct: 582 VTFTTLINGY 591



 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 135/275 (49%), Gaps = 22/275 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I G+CK NR+D AE     M  +G  PN++T+N L++G C            K I 
Sbjct: 363 YSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG----------AKRID 412

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++  EM   G+  D T+++ ++H +        +LD L  M   G+CP + T  +++
Sbjct: 413 DGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472

Query: 122 KCLCSCGRIEDAEELLGEMVR-----------NGVCPSAETYNCFFKEYRGRKDANGAMK 170
             LC  G+++DA E+   M +           NGV P  +TYN              A +
Sbjct: 473 DGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEE 532

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           LY +M   G+ VP+  +Y+ +I      +R+D   ++++ +      P++ ++T LI+G 
Sbjct: 533 LYEEMPHRGI-VPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGY 591

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           C+  +  +  + F EM  +G++   +T+ TL  G 
Sbjct: 592 CKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 146/314 (46%), Gaps = 34/314 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRAS-------LHPSE 54
           +T+L+ G C+  RI  A   L  M+E G++P  +TY  +++G+C++         L   E
Sbjct: 187 FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKME 246

Query: 55  RFEKTIRN-------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                I N                   A+ +F EM+ +GI PD+ +++ ++  +  + + 
Sbjct: 247 EVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRW 306

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +   L  M E+ I P V TY++++      G+  +AEEL  EM+  G+ P+  TY+  
Sbjct: 307 SDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSM 366

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +  +   + A  ++  M   G C PN+ ++N LI  +    R+D   E+ +++  +G
Sbjct: 367 IDGFCKQNRLDAAEHMFYLMATKG-CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG 425

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS------- 268
           L  D  +Y  LIHG         A     EMI  GL P  VT +TL  GL  +       
Sbjct: 426 LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDAL 485

Query: 269 DMLRTWRRLKKKLD 282
           +M +  ++ KK LD
Sbjct: 486 EMFKVMQKSKKDLD 499



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 133/290 (45%), Gaps = 27/290 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------------- 48
           + +L++G C  +R+  A     +M E    PNVVT+  L+NG+CR               
Sbjct: 152 FNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMM 211

Query: 49  --SLHPSERFEKTIRN----------AEKVFDEM-RVRGIEPDVTSFSIVLHVYSRAHQP 95
              L P++    TI +          A  +  +M  V  I P+V  +S ++    +  + 
Sbjct: 212 EDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRH 271

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             + +    M+EKGI P + TY+S++   CS GR  DAE+LL EM+   + P   TYN  
Sbjct: 272 SDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNAL 331

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +        A +LY +M   G+ +PN  +Y+ +I  F   NR+D    ++  +   G
Sbjct: 332 INAFVKEGKFFEAEELYDEMLPRGI-IPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKG 390

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
             P+L ++  LI G C  ++  +  +   EM E GL+    T+ TL  G 
Sbjct: 391 CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 121/257 (47%), Gaps = 10/257 (3%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           ++ R D+      +M  + +  ++ ++ +L+   C  + L            A   F ++
Sbjct: 91  RMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLP----------FALSTFGKL 140

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
              G+ PDV +F+ +LH      +   +L+  + M E    P V T+++++  LC  GRI
Sbjct: 141 TKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRI 200

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
            +A  LL  M+ +G+ P+  TY         + D   A+ L R+M+E    +PN+  Y+ 
Sbjct: 201 VEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSA 260

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           +I       R    + ++ +++  G+ PDL +Y  +I G C   +W +A Q   EM+E+ 
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 251 LLPQKVTFETLYRGLIQ 267
           + P  VT+  L    ++
Sbjct: 321 ISPDVVTYNALINAFVK 337



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 36/230 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           Y +LI+G+  +  ++ A   L EMI  G+ P++VT + LL+G+C    L           
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQ 492

Query: 51  ---------HPSERFEKTIRN----------------AEKVFDEMRVRGIEPDVTSFSIV 85
                    HP    E  ++                 AE++++EM  RGI PD  ++S +
Sbjct: 493 KSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 552

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           +    +  +   +    + M  K   P V T+++++   C  GR++D  EL  EM R G+
Sbjct: 553 IDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGI 612

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
             +A TY      +R   + NGA+ ++++M   G+    +   N+L G++
Sbjct: 613 VANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLW 662



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 105/266 (39%), Gaps = 37/266 (13%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           K + +A  +F +M      P V  F  ++ V  R  +P L +     M+ K I   + ++
Sbjct: 58  KGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSF 117

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + ++KC CSC ++  A    G++ + G+ P   T+N            + A+ L+ QM E
Sbjct: 118 TILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFE 177

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK---- 233
              C PN+ ++  L+       R+     + + +   GL P   +Y  ++ G+C+K    
Sbjct: 178 T-TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV 236

Query: 234 --------------------------------QKWKEACQYFVEMIEKGLLPQKVTFETL 261
                                            +  +A   F EM EKG+ P   T+ ++
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 262 YRGLIQSDMLRTWRRLKKKLDEESIT 287
             G   S       +L +++ E  I+
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKIS 322



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 10/136 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I G CK +R+D A +    M  +   PNVVT+  L+NG C+             + 
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGR----------VD 598

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++F EM  RGI  +  ++  ++  + +      +LD    M   G+ P   T  +++
Sbjct: 599 DGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658

Query: 122 KCLCSCGRIEDAEELL 137
             L S   ++ A  +L
Sbjct: 659 TGLWSKEELKRAVAML 674


>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 495

 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/271 (31%), Positives = 143/271 (52%), Gaps = 19/271 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L  G+C I R  MA R L EM++RG+EP +VTYN +L G  R             I+
Sbjct: 211 YNILANGYCLIKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFR----------SNQIK 260

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A + + EM+ R  E DV +++ V+H +  A   + +    + M ++G+ P VATY++++
Sbjct: 261 EAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALI 320

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           + LC    +E+A  +  EM R GVC P+  TYN   +      D   A+    +M E GL
Sbjct: 321 QVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGL 380

Query: 181 --CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
             CV    +YN++I  F     ++   E++  +      P+LD+Y +LI  +  ++K ++
Sbjct: 381 RACV---QTYNVVIRYFCDAGEVEKALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSED 437

Query: 239 ---ACQYFVEMIEKGLLPQKVTFETLYRGLI 266
              A +  ++M+++G LP+K TF  +  GL+
Sbjct: 438 LVVAGKLLMDMVDRGFLPRKFTFNRVLNGLV 468



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 15/210 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I+G+     +  A+R   EM++ GV PNV TYN L+  +C++ S          + 
Sbjct: 281 YTTVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDS----------VE 330

Query: 62  NAEKVFDEMRVRGI-EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           NA  VF+EM   G+  P+V ++++V+         + +L  +  M E G+   V TY+ V
Sbjct: 331 NAVVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVV 390

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK---DANGAMKLYRQMKE 177
           ++  C  G +E A E+ G+M      P+ +TYN        RK   D   A KL   M +
Sbjct: 391 IRYFCDAGEVEKALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVD 450

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREI 207
            G  +P   ++N ++   +     D  +EI
Sbjct: 451 RGF-LPRKFTFNRVLNGLVITGNQDFAKEI 479



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 105/228 (46%), Gaps = 11/228 (4%)

Query: 51  HPSERFEKTIRNAEKVFD---------EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK 101
           H    F+  +  A ++ D          MR   + P   + +I+   Y+   +P  ++  
Sbjct: 102 HSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASNGKPHRAVRT 161

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
              M E GI   + ++++++  LC   R+E A  LL  +  +   P   TYN     Y  
Sbjct: 162 FLSMAEHGIRQDLHSFNTLLDILCKSKRVETAHSLLKTLT-SRFRPDTVTYNILANGYCL 220

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
            K    A+++ ++M + G+  P M +YN ++  +   N++    E + ++K      D+ 
Sbjct: 221 IKRTPMALRVLKEMVQRGI-EPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVV 279

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           +YT +IHG       K+A + F EM+++G++P   T+  L + L + D
Sbjct: 280 TYTTVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKD 327


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 151/310 (48%), Gaps = 27/310 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G+C   R   AE+ L EM+ER + P+VVTYN L+N   +         FE    
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF-----FE---- 343

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+++DEM  RGI P+  ++S ++  + + ++   +      M  KG  P + T+++++
Sbjct: 344 -AEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLI 402

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI+D  ELL EM   G+     TYN     +    D N A+ L ++M   GLC
Sbjct: 403 DGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLC 462

Query: 182 VPNMHSYNILIGMFM-------ALNRMDMVREIWNDVKGS----GLGPDLDSYTMLIHGL 230
            P++ + + L+           AL    ++++   D+  S    G+ PD+ +Y +LI GL
Sbjct: 463 -PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEES 285
             + K+ EA + + EM  +G++P  +T+ ++  GL +   L    ++      K      
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNV 581

Query: 286 ITFGSEFQNY 295
           +TF +    Y
Sbjct: 582 VTFTTLINGY 591



 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 135/275 (49%), Gaps = 22/275 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I G+CK NR+D AE     M  +G  PN++T+N L++G C            K I 
Sbjct: 363 YSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG----------AKRID 412

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++  EM   G+  D T+++ ++H +        +LD L  M   G+CP + T  +++
Sbjct: 413 DGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472

Query: 122 KCLCSCGRIEDAEELLGEMVR-----------NGVCPSAETYNCFFKEYRGRKDANGAMK 170
             LC  G+++DA E+   M +           NGV P  +TYN              A +
Sbjct: 473 DGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEE 532

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           LY +M   G+ VP+  +Y+ +I      +R+D   ++++ +      P++ ++T LI+G 
Sbjct: 533 LYEEMPHRGI-VPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGY 591

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           C+  +  +  + F EM  +G++   +T+ TL  G 
Sbjct: 592 CKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 129/268 (48%), Gaps = 18/268 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+L+ G C+  RI  A   L  M+E G++P  +TY  +++G+C+             I 
Sbjct: 187 FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCK-------------IG 233

Query: 62  NAEKVFDEMR----VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           +     D +R    +  I P+V  +S ++    +  +   + +    M+EKGI P + TY
Sbjct: 234 DTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTY 293

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           +S++   CS GR  DAE+LL EM+   + P   TYN     +        A +LY +M  
Sbjct: 294 NSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP 353

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G+ +PN  +Y+ +I  F   NR+D    ++  +   G  P+L ++  LI G C  ++  
Sbjct: 354 RGI-IPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRID 412

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +  +   EM E GL+    T+ TL  G 
Sbjct: 413 DGMELLHEMTETGLVADTTTYNTLIHGF 440



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 120/257 (46%), Gaps = 10/257 (3%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           ++ R D+      +M  + +  ++ ++ +L+   C  + L            A   F ++
Sbjct: 91  RMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLP----------FALSTFGKI 140

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
              G+ PDV +F+ +LH      +   +L+  + M E    P V T+++++  LC  GRI
Sbjct: 141 TKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRI 200

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
            +A  LL  M+ +G+ P+  TY           D   A+ L R+M+E    +PN+  Y+ 
Sbjct: 201 VEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSA 260

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           +I       R    + ++ +++  G+ PDL +Y  +I G C   +W +A Q   EM+E+ 
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 251 LLPQKVTFETLYRGLIQ 267
           + P  VT+  L    ++
Sbjct: 321 ISPDVVTYNALINAFVK 337



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 36/230 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           Y +LI+G+  +  ++ A   L EMI  G+ P++VT + LL+G+C    L           
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQ 492

Query: 51  ---------HPSERFEKTIRN----------------AEKVFDEMRVRGIEPDVTSFSIV 85
                    HP    E  ++                 AE++++EM  RGI PD  ++S +
Sbjct: 493 KSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 552

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           +    +  +   +    + M  K   P V T+++++   C  GR++D  EL  EM R G+
Sbjct: 553 IDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGI 612

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
             +A TY      +R   + NGA+ ++++M   G+    +   N+L G++
Sbjct: 613 VANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLW 662



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 110/266 (41%), Gaps = 37/266 (13%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           K + +A  +F +M      P V  F  ++ V  R  +P L +     M+ K I   + ++
Sbjct: 58  KGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSF 117

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + ++KC CSC ++  A    G++ + G+ P   T+N            + A+ L+ QM E
Sbjct: 118 TILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFE 177

Query: 178 DGLCVPNMHSYNILIG----------MFMALNRM----------------DMVREIWNDV 211
              C PN+ ++  L+               L+RM                D + +I + V
Sbjct: 178 T-TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTV 236

Query: 212 KG----------SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
                       S + P++  Y+ +I  LC+  +  +A   F EM EKG+ P   T+ ++
Sbjct: 237 SALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 262 YRGLIQSDMLRTWRRLKKKLDEESIT 287
             G   S       +L +++ E  I+
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKIS 322



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 10/125 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I G CK +R+D A +    M  +   PNVVT+  L+NG C+             + 
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGR----------VD 598

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++F EM  RGI  +  ++  ++  + +      +LD    M   G+ P   T  +++
Sbjct: 599 DGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658

Query: 122 KCLCS 126
             L S
Sbjct: 659 TGLWS 663


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 149/308 (48%), Gaps = 26/308 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y +L+ G C+   +++A++   EMI  G+ P++VTY +L+NG C+  SL  ++ F     
Sbjct: 412 YNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEML 471

Query: 57  -----------------EKTIRNAEKVF---DEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                            E  + +  + F   +EM  +G  PD+  +++V+    +    +
Sbjct: 472 HEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLE 531

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + + L  M   G+ P   TY+S++      GR+    E+  EM+  G+ PS  TY    
Sbjct: 532 EASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLI 591

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             + G+     A   + +M+E G+ +PN+ +YN LI     + RMD     + ++   G+
Sbjct: 592 HGHAGKGRLERAFIYFSEMQEKGI-LPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGI 650

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  SYT+LI+  C    W+EA   + +M+++G+ P   T   L + L +   L+  R+
Sbjct: 651 FPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVRQ 710

Query: 277 LKKKLDEE 284
           L+  LD E
Sbjct: 711 LESLLDSE 718



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 142/320 (44%), Gaps = 61/320 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S IYG CK+ R+  A + L +M+   + P+VV+YN L+ G CR  +L  +      +R
Sbjct: 342 YNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELR 401

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLH--------- 87
           +                         A+++  EM   GI PD+ +++I+++         
Sbjct: 402 SIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLS 461

Query: 88  ----VYSRAHQPQLSLDKLNF----------------------MKEKGICPTVATYSSVV 121
                +       L LD   +                      M  KG  P +  Y+ VV
Sbjct: 462 MAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVV 521

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +E+A ELL +MV +GV P   TY      +          +++ +M   GL 
Sbjct: 522 DGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGL- 580

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y +LI       R++     +++++  G+ P++ +Y  LI+GLC+ ++  +A  
Sbjct: 581 TPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYN 640

Query: 242 YFVEMIEKGLLPQKVTFETL 261
           +F EM+EKG+ P K ++  L
Sbjct: 641 FFAEMVEKGIFPNKYSYTIL 660



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 11/250 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+  +CK  ++      L EM  RG  PN VTYNVL+NG+ ++        FE+   
Sbjct: 237 YNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKG------EFEQ--- 287

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +  EM   G++    +++ +++ Y        +L     M  KG  PTVATY+S +
Sbjct: 288 -AKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFI 346

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+ DA + L +M+ N + P   +YN     Y    +   A  L+ +++   L 
Sbjct: 347 YGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYL- 405

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +YN L+        +++ +++  ++   G+ PD+ +YT+L++G C+      A +
Sbjct: 406 FPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQE 465

Query: 242 YFVEMIEKGL 251
           +F EM+ +GL
Sbjct: 466 FFDEMLHEGL 475



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 132/283 (46%), Gaps = 11/283 (3%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI+ + K + ++       +MI+  + P+V   N +L  +          R +  +  A 
Sbjct: 170 LIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRIL----------RDKDLMSKAV 219

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           +V+  M   GI+P + +++ +L  Y +  + Q  LD L+ M+ +G  P   TY+ ++  L
Sbjct: 220 EVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGL 279

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
              G  E A+ L+GEM++ G+  SA TYN     Y  +     A+ L  +M   G   P 
Sbjct: 280 SKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKG-ASPT 338

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +YN  I     L RM    +  +D+  + L PD+ SY  LI+G C      +A   F 
Sbjct: 339 VATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFD 398

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           E+    L P  VT+ TL  GL +   L   ++LK ++  E I 
Sbjct: 399 ELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIA 441



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 104/207 (50%), Gaps = 11/207 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  ++ G CK+  ++ A   L +M+  GV P+ VTY  +++       L          
Sbjct: 516 IYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRL---------- 565

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R   ++F EM  +G+ P V ++++++H ++   + + +    + M+EKGI P V TY+S+
Sbjct: 566 RKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSL 625

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   R++ A     EMV  G+ P+  +Y     E     +   A+ LY+QM + G+
Sbjct: 626 INGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGV 685

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREI 207
             P+  +++ L+       ++  VR++
Sbjct: 686 -QPDSCTHSALLKQLGKDCKLQAVRQL 711


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  140 bits (353), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 162/343 (47%), Gaps = 61/343 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKTI 60
           Y +L+  +C+   +D AER +  M E G++PN+VT+N ++NG+C+   +  + + F++ +
Sbjct: 195 YNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMV 254

Query: 61  RN------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +                         A  VF EM  +GI PDV +F+ ++HV  +A   +
Sbjct: 255 KEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLE 314

Query: 97  LSLDKLNFMKEKG-----------------------------------ICPTVATYSSVV 121
            ++  +  M+E+G                                   I P+V  Y++++
Sbjct: 315 RAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALI 374

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR+++A EL+ EM   GV P   TY+     Y    D + A +L +QM E+G+ 
Sbjct: 375 NGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGV- 433

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+  +Y+ LI +     R+     ++ ++   GL PD  +YT LI G C++   + A  
Sbjct: 434 LPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALS 493

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
              EM++ G+LP  VT+  L  GL +S   +  +RL  KL  E
Sbjct: 494 LHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHE 536



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 133/269 (49%), Gaps = 11/269 (4%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A RF   M+  GV PNV TYN+L+  +C R   H  E        A  V  +MR  G +P
Sbjct: 141 ARRFFDSMLSDGVAPNVYTYNILVRALCGRG--HRKE--------ALSVLRDMRGAGCDP 190

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           +  +++ ++  + RA +   +   ++ M+E G+ P + T++SVV  +C  GR+EDA ++ 
Sbjct: 191 NAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVF 250

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            EMV+ G+ P   +YN     Y     ++ A+ ++ +M   G+ +P++ ++  LI +   
Sbjct: 251 DEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGI-MPDVVTFTSLIHVMCK 309

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
              ++    +  +++  GL  +  ++T LI G C+K    +A     EM +  + P  V 
Sbjct: 310 AGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVC 369

Query: 258 FETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +  L  G      +   R L ++++ + +
Sbjct: 370 YNALINGYCMVGRMDEARELVREMEAKGV 398



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 134/294 (45%), Gaps = 24/294 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+C + R+D A   + EM  +GV+P+VVTY+ +L+  C+    H          
Sbjct: 370 YNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTH---------- 419

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  +M   G+ PD  ++S ++ V     +   +      M   G+ P   TY+S++
Sbjct: 420 SAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLI 479

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETY----NCFFKEYRGRKDANGAMKLYRQ--- 174
              C  G +E A  L  EMV+ GV P   TY    N   K  R ++      KLY +   
Sbjct: 480 DGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPV 539

Query: 175 ---MKEDGL--CVPN--MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
              +K D L  C  N  + S   L+  F     M+   +++  +       D   Y++LI
Sbjct: 540 PANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLI 599

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           HG C +    +A  +  +M++ G  P   +  +L RGL +  M+    ++ ++L
Sbjct: 600 HGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQL 653



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 117/244 (47%), Gaps = 14/244 (5%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G  P+V+ YN +L  +   ASL  + RF          FD M   G+ P+V +++I++  
Sbjct: 118 GYAPSVLAYNAVLLAL-SDASLPSARRF----------FDSMLSDGVAPNVYTYNILVRA 166

Query: 89  Y-SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
              R H+ + +L  L  M+  G  P   TY+++V   C  G ++ AE L+  M   G+ P
Sbjct: 167 LCGRGHRKE-ALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKP 225

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
           +  T+N              A K++ +M ++GL  P+  SYN L+G +  +        +
Sbjct: 226 NLVTFNSVVNGICKAGRMEDARKVFDEMVKEGL-APDGVSYNTLVGGYCKVGCSHEALSV 284

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           + ++   G+ PD+ ++T LIH +C+    + A     EM E+GL   ++TF  L  G  +
Sbjct: 285 FAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCK 344

Query: 268 SDML 271
              L
Sbjct: 345 KGFL 348



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 40/219 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           YTSLI G CK   ++ A     EM++ GV P+VVTY+VL+NG+ + A    ++R      
Sbjct: 475 YTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLY 534

Query: 57  --------------EKTIRNAE---------------------KVFDEMRVRGIEPDVTS 81
                          +  RNAE                     KV+  +  R    D + 
Sbjct: 535 HEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSV 594

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           +S+++H + R      +L     M + G  P   +  S+++ L   G + +A++++ +++
Sbjct: 595 YSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLL 654

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
                  AE             + +  + +   M  DGL
Sbjct: 655 NCCSLADAEASKALIDLNLKEGNVDAVLDVLHGMARDGL 693


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L  G CK   +D A   L EM  +G+E N+ TYN L+NG+C+  +          I 
Sbjct: 366 YTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGN----------ID 415

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+  +M V G  PD  +++ ++  Y ++ +   + + L  M ++ + PTV T++ ++
Sbjct: 416 QAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLM 475

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +ED E+LL  M+  G+ P+A TYN   K+Y  R +     ++YR M   G+ 
Sbjct: 476 NGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGV- 534

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+ ++YNILI        M     +  D+ G G    + SY  LI G  +++K+ EA +
Sbjct: 535 VPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARE 594

Query: 242 YFVEMIEKGLLPQK 255
            F +M  +GL+  +
Sbjct: 595 LFEQMRREGLVADR 608



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 132/263 (50%), Gaps = 11/263 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+LI G+CK+  +  A R   EM +R + P+ +TY  ++ G+C+             +
Sbjct: 260 IYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGR----------V 309

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+K+F EM  + +EPD  +++ ++  Y +  + + +    N M + G+ P + TY+++
Sbjct: 310 MEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTAL 369

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              LC CG ++ A ELL EM R G+  +  TYN          + + A+KL + M+  G 
Sbjct: 370 ADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGF 429

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  +Y  L+  +     M    E+   +    L P + ++ +L++G C     ++  
Sbjct: 430 -HPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGE 488

Query: 241 QYFVEMIEKGLLPQKVTFETLYR 263
           +    M+EKG++P   T+ +L +
Sbjct: 489 KLLKWMLEKGIMPNATTYNSLIK 511



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 125/266 (46%), Gaps = 12/266 (4%)

Query: 20  RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDV 79
           + + EM  +G++PN  TYN ++  +C+             +  AE+V  EM   GI PD 
Sbjct: 209 KLIEEMQIKGLKPNPYTYNGVILLLCKTGK----------VAEAERVLREMISEGIAPDG 258

Query: 80  TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
             ++ ++  + +      +    + M+++ I P   TY++V+  LC  GR+ +A++L  E
Sbjct: 259 VIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHE 318

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
           MV   + P   TY      Y        A  L+ QM + GL  PN+ +Y  L        
Sbjct: 319 MVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGL-TPNIVTYTALADGLCKCG 377

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
            +D   E+ +++   GL  ++ +Y  L++GLC+     +A +   +M   G  P  VT+ 
Sbjct: 378 EVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYT 437

Query: 260 TLYRGLIQS-DMLRTWRRLKKKLDEE 284
           TL     +S +M+R    L++ LD E
Sbjct: 438 TLMDAYCKSREMVRAHELLRQMLDRE 463



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 8/222 (3%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSR-------AHQPQLSLDKLNFMKEKGICPTVA 115
           A K+FD+M   G+   V S ++ +   S        A + +  L  +  M+ KG+ P   
Sbjct: 165 ARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKGEWVLKLIEEMQIKGLKPNPY 224

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           TY+ V+  LC  G++ +AE +L EM+  G+ P    Y      +    + + A +L+ +M
Sbjct: 225 TYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEM 284

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           ++  +  P+  +Y  +I       R+    ++++++    L PD  +YT LI G C++ K
Sbjct: 285 QKRKIS-PDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGK 343

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            KEA     +M++ GL P  VT+  L  GL +   + T   L
Sbjct: 344 MKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANEL 385



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 25/179 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK--- 58
           YT+L+  +CK   +  A   L +M++R ++P VVT+NVL+NG C    L   E+  K   
Sbjct: 436 YTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWML 495

Query: 59  ----------------------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  +R   +++  M  +G+ PD  +++I++  + +A   +
Sbjct: 496 EKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMK 555

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
            +      M  KG   TV++Y++++K      +  +A EL  +M R G+    E YN F
Sbjct: 556 EAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIF 614


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 131/251 (52%), Gaps = 11/251 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK   +D A   L EM ++G++ NV  YN ++NG+C+  +          I 
Sbjct: 471 YGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGN----------IE 520

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+  EM V GI+PD  +++ V+  Y R      +   L  M ++G+ PTV T++ ++
Sbjct: 521 QAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLM 580

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +ED + LLG M+  G+ P A TYN   K++  R   N   K+Y++M+  G+ 
Sbjct: 581 NGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVA 640

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ ++YNILI        +     ++ ++   G  P + SY  LI    +K+K+ EA +
Sbjct: 641 -PDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARE 699

Query: 242 YFVEMIEKGLL 252
            F EM   GL+
Sbjct: 700 LFEEMRGHGLV 710



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 146/294 (49%), Gaps = 11/294 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI  +CK   +  A     EM++ G+ PN+VTY  L++G+C+   L           
Sbjct: 436 YTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELD---------- 485

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ DEMR +G++ +V  ++ +++   +A   + ++  +  M+  GI P   TY++V+
Sbjct: 486 TANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVI 545

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G I+ A +LL EM+  G+ P+  T+N     +          +L   M E G+ 
Sbjct: 546 DAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGI- 604

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+  +YN L+      N M+   +I+  ++  G+ PD ++Y +LI G C+ +  KEA  
Sbjct: 605 VPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWF 664

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
            + EMIEKG +P   ++  L +   +       R L +++    +    E  N+
Sbjct: 665 LYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNF 718



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 148/298 (49%), Gaps = 11/298 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+LI+G+ K+  +  A ++  EM+ + + P+ +TY  L+ G  +             +
Sbjct: 365 VYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGK----------V 414

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              + +F EM  RG++PD  +++ ++ VY +A +   +    N M + G+ P + TY ++
Sbjct: 415 IEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGAL 474

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G ++ A ELL EM + G+  +   YN          +   A+KL ++M+  G+
Sbjct: 475 IDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGI 534

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  +Y  +I  +  L  +D   ++  ++   GL P + ++ +L++G C     ++  
Sbjct: 535 -DPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGD 593

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
           +    M+EKG++P  +T+ TL +     + + T  ++ K++  + +   S   N   K
Sbjct: 594 RLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIK 651



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 138/307 (44%), Gaps = 27/307 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +IY  C++ ++  A R L +M  R   P+VV+Y+ +++G C    L  + +    ++
Sbjct: 261 YNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQ 320

Query: 62  -------------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     AEKV  EM  + I PD   ++ ++H + +    +
Sbjct: 321 IKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVR 380

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    + M  K I P   TY+++++     G++ + + L  EM+  G+ P   TY    
Sbjct: 381 TANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLI 440

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y    +   A  L+ +M + G+  PN+ +Y  LI        +D   E+ ++++  GL
Sbjct: 441 DVYCKAGEMVNAFSLHNEMVQMGM-TPNIVTYGALIDGLCKHGELDTANELLDEMRKKGL 499

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ-SDMLRTWR 275
             ++  Y  +++G+C+    ++A +   EM   G+ P  +T+ T+     +  D+ +  +
Sbjct: 500 QLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHK 559

Query: 276 RLKKKLD 282
            L++ LD
Sbjct: 560 LLQEMLD 566



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 119/257 (46%), Gaps = 14/257 (5%)

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
           E G+  N  +YN+++  +CR             ++ A ++  +M  R   PDV S+S V+
Sbjct: 251 EYGISWNTTSYNIIIYSLCRLGK----------VKEAHRLLMQMDFRSSTPDVVSYSTVI 300

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
             Y    + + +L  ++ M+ KG+ P   TY+S++  LC  G+  +AE++L EM+   + 
Sbjct: 301 DGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKII 360

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P    Y      +        A K + +M    +  P+  +Y  LI  F    ++   + 
Sbjct: 361 PDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKIS-PDYITYTTLIQGFGQGGKVIEPQN 419

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +++++   GL PD  +YT LI   C+  +   A     EM++ G+ P  VT+  L  GL 
Sbjct: 420 LFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLC 479

Query: 267 QSDMLRTWRRLKKKLDE 283
           +   L T   L   LDE
Sbjct: 480 KHGELDTANEL---LDE 493



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 91/179 (50%), Gaps = 25/179 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           YT++I  +C++  ID A + L EM++RG++P VVT+NVL+NG C    L   +R      
Sbjct: 541 YTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWML 600

Query: 57  ----------------EKTIRNA----EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                           +  IRN+     K++  MR +G+ PD  +++I++  + +A   +
Sbjct: 601 EKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLK 660

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
            +      M EKG  PTV +Y++++K      +  +A EL  EM  +G+    E YN F
Sbjct: 661 EAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFF 719


>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 628

 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 146/272 (53%), Gaps = 13/272 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSL+YGWCK  ++  A+  L +M + G+EP++V YN LL G  +   +           
Sbjct: 238 FTSLLYGWCKEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMG---------- 287

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  EMR +G EP+ TS+++++    +  + + +      M+  G    + TYS+++
Sbjct: 288 DAYDLLKEMRRKGCEPNATSYTVLIQSLCKHERLEEATRVFVEMQRNGCQADLVTYSTLI 347

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+I+   ELL EM++ G  P+   Y      +  +++     +L  +M++ G C
Sbjct: 348 SGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMVAHEKKEELEECKELVNEMQKIG-C 406

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YN +I +   L  +     +WN+++ SGL P +D++ ++I+G  E+    EAC+
Sbjct: 407 APDLSIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPSIDTFVIMINGFLEQGCLVEACE 466

Query: 242 YFVEMIEKGLL--PQKVTFETLYRGLIQSDML 271
           YF EM+ +GL   PQ  T + L   L++++ L
Sbjct: 467 YFKEMVGRGLFAAPQYGTLKELMNSLLRAEKL 498



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 133/266 (50%), Gaps = 12/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI   CK  R++ A R   EM   G + ++VTY+ L++G C+             I+
Sbjct: 308 YTVLIQSLCKHERLEEATRVFVEMQRNGCQADLVTYSTLISGFCKWGK----------IK 357

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++ DEM  +G  P+   +  ++  + +  + +   + +N M++ G  P ++ Y++V+
Sbjct: 358 RGYELLDEMIQQGHFPNQVIYQHIMVAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVI 417

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
           +  C  G +++   L  EM  +G+ PS +T+      +  +     A + +++M   GL 
Sbjct: 418 RLACKLGEVKEGVRLWNEMESSGLSPSIDTFVIMINGFLEQGCLVEACEYFKEMVGRGLF 477

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS-GLGPDLDSYTMLIHGLCEKQKWKEA 239
             P   +   L+   +   +++M ++ WN +  S G   ++ ++T+ IH L  K   KEA
Sbjct: 478 AAPQYGTLKELMNSLLRAEKLEMAKDAWNCITASKGCQLNVSAWTIWIHALFSKGHVKEA 537

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGL 265
           C + + M++K L+PQ  TF  L RGL
Sbjct: 538 CSFCIAMMDKDLMPQPDTFAKLMRGL 563



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 126/292 (43%), Gaps = 47/292 (16%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           +  A + L EM   G EP+   +  LL+ + +  S          ++ A  +F+E+R R 
Sbjct: 182 VHKAVQVLDEMPNYGCEPDEYVFGCLLDALRKNGS----------VKEAASLFEELRYRW 231

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
            +P V  F+ +L+ + +  +   +   L  MK+ GI P +  Y++++       ++ DA 
Sbjct: 232 -KPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDAY 290

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           +LL EM R G  P+A +Y    +     +    A +++ +M+ +G C  ++ +Y+ LI  
Sbjct: 291 DLLKEMRRKGCEPNATSYTVLIQSLCKHERLEEATRVFVEMQRNG-CQADLVTYSTLISG 349

Query: 195 FMALNRM--------DMVRE---------------------------IWNDVKGSGLGPD 219
           F    ++        +M+++                           + N+++  G  PD
Sbjct: 350 FCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMVAHEKKEELEECKELVNEMQKIGCAPD 409

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           L  Y  +I   C+  + KE  + + EM   GL P   TF  +  G ++   L
Sbjct: 410 LSIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPSIDTFVIMINGFLEQGCL 461



 Score = 44.3 bits (103), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 16/166 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I   CK+  +    R   EM   G+ P++ T+ +++NG   +  L          
Sbjct: 412 IYNTVIRLACKLGEVKEGVRLWNEMESSGLSPSIDTFVIMINGFLEQGCL---------- 461

Query: 61  RNAEKVFDEMRVRGI--EPDVTSFSIVLHVYSRAHQPQLSLDKLN-FMKEKGICPTVATY 117
             A + F EM  RG+   P   +   +++   RA + +++ D  N     KG    V+ +
Sbjct: 462 VEACEYFKEMVGRGLFAAPQYGTLKELMNSLLRAEKLEMAKDAWNCITASKGCQLNVSAW 521

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163
           +  +  L S G +++A      M+   + P  +T   F K  RG K
Sbjct: 522 TIWIHALFSKGHVKEACSFCIAMMDKDLMPQPDT---FAKLMRGLK 564


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 141/268 (52%), Gaps = 15/268 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I G CK  R D A     EM   GV P+V++Y  L++G CR              +
Sbjct: 486 YSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKW----------K 535

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A+ +F+EM   G++PDVT+FS+++ +  +  +   + + L  M ++G  P   TY+++V
Sbjct: 536 DAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLV 595

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED--- 178
           K LC   RI +A +L  +M + G  P   TY    K      +   A++L+++M  D   
Sbjct: 596 KGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQ 655

Query: 179 -GLCV-PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
            G    P++ SY+I+I       R D  RE++ ++K  G+ P++ SYT LIHG C   K 
Sbjct: 656 YGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKL 715

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRG 264
           ++A   F EM+++G+    VT+  +  G
Sbjct: 716 EDAKHLFNEMVDQGVQLNAVTYSVMIHG 743



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/265 (33%), Positives = 140/265 (52%), Gaps = 15/265 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I G CK  R D A     EM  +G+ P+V++Y  L++G C       S ++EK   
Sbjct: 305 YSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCL------SGKWEK--- 355

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F+EM   GI+PDVT+ S+++ +  +  +   +   L  + ++G  P V T +++V
Sbjct: 356 -AKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLV 414

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED--- 178
           K LC   RI  A +L  +M + G  P+  T     K      +   A++L++ M  D   
Sbjct: 415 KGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSP 474

Query: 179 -GL-CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
            G+ C PN  SY+I+I       R D  RE++ ++K  G+ PD+ SYT LIHG C   KW
Sbjct: 475 YGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKW 534

Query: 237 KEACQYFVEMIEKGLLPQKVTFETL 261
           K+A   F EM++ G+ P   TF  L
Sbjct: 535 KDAKYLFNEMVDIGVQPDVTTFSVL 559



 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 140/265 (52%), Gaps = 15/265 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I G CK  R D A     EM  +G+ P+V++Y  L++G CR      S ++EK   
Sbjct: 124 YSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCR------SGKWEK--- 174

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F+EM   GI  DVT+ S+++ +  +  +   + + L  M ++G    + TYS+++
Sbjct: 175 -AKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLI 233

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED--- 178
           K LC   RI +A  L   M + G  P A  Y    K      + N A++L+++M  D   
Sbjct: 234 KGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGR 293

Query: 179 -GL-CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
            G+ C P + SY+I+I       R D  RE++ ++K  G+ PD+ SYT LIHG C   KW
Sbjct: 294 YGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKW 353

Query: 237 KEACQYFVEMIEKGLLPQKVTFETL 261
           ++A   F EM++ G+ P   T   L
Sbjct: 354 EKAKCLFNEMLDVGIQPDVTTSSVL 378



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 156/333 (46%), Gaps = 52/333 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI+G+C   + + A+    EM++ G++P+V T +VL++ +C++            + 
Sbjct: 340 YTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGK----------VI 389

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVL------HVYSRAHQPQLSLDKLNFMKE-------- 107
            A K+ + +  RG  PDV + + ++      H  S+A Q  L + KL  M          
Sbjct: 390 EANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLM 449

Query: 108 KGIC---------------------------PTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           KG+C                           P   +YS ++  LC CGR ++A EL  EM
Sbjct: 450 KGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEM 509

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
              GV P   +Y      +        A  L+ +M + G+  P++ ++++LI M     +
Sbjct: 510 KALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGV-QPDVTTFSVLIDMLCKEGK 568

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           +    E+   +   G  P+  +YT L+ GLC   +  EA Q F++M + G LP  VT+ T
Sbjct: 569 VIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGT 628

Query: 261 LYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQ 293
           L +GL Q+  ++T   L KK+  ++  +G+ F+
Sbjct: 629 LMKGLCQTGNIKTALELHKKMLSDTGQYGTNFK 661



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 160/325 (49%), Gaps = 38/325 (11%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T+L+ G C  +RI  A +   +M + G  PNVVT   L+ G+C+  ++  +    K + +
Sbjct: 411 TTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLS 470

Query: 63  -------------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
                                          A ++F EM+  G+ PDV S++ ++H + R
Sbjct: 471 DTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCR 530

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
           + + + +    N M + G+ P V T+S ++  LC  G++ +A ELL  M++ G  P+  T
Sbjct: 531 SGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVT 590

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALN---RMDMVREI 207
           Y    K        + A +L+ +M++ G C+P++ +Y  L+ G+    N    +++ +++
Sbjct: 591 YTTLVKGLCMNDRISEATQLFMKMQKLG-CLPDVVTYGTLMKGLCQTGNIKTALELHKKM 649

Query: 208 WNDVK--GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            +D    G+   PD+ SY+++I GLC+  +  EA + F EM   G++P  +++ +L  G 
Sbjct: 650 LSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGF 709

Query: 266 IQSDMLRTWRRLKKKLDEESITFGS 290
            +S  L   + L  ++ ++ +   +
Sbjct: 710 CRSGKLEDAKHLFNEMVDQGVQLNA 734



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 99/183 (54%), Gaps = 5/183 (2%)

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           GI+PDVT+  +++ ++ +  +   + + L  M ++G    + TYS+++K LC   RI +A
Sbjct: 5   GIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEA 64

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED----GL-CVPNMHSY 188
            +L   M + G  P A  Y    K        N A+ L+++M  D    G+ C P + SY
Sbjct: 65  TQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSY 124

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           +I+I       R D  RE++ ++K  G+ PD+ SYT LIHG C   KW++A   F EM++
Sbjct: 125 SIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLD 184

Query: 249 KGL 251
            G+
Sbjct: 185 VGI 187



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 139/291 (47%), Gaps = 17/291 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +CK  ++  A   L  M++RG   ++VTY+ L+ G+C +            I  A 
Sbjct: 16  LIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMK----------HRISEAT 65

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL----DKLNFMKEKGI-C-PTVATYS 118
           ++F  M+  G  PD  ++  ++    +  +  ++L    + LN   + GI C PT+ +YS
Sbjct: 66  QLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYS 125

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++  LC   R ++A EL  EM   G+ P   +Y      +        A  L+ +M + 
Sbjct: 126 IIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDV 185

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+   ++ + ++LI +     ++    E+   +   G   D+ +Y+ LI GLC K +  E
Sbjct: 186 GI-RSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISE 244

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
           A + F+ M + G  P  + + TL +GL Q+  + T  +L +++  ++  +G
Sbjct: 245 ATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYG 295



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 31/163 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G C  +RI  A +   +M + G  P+VVTY  L+ G+C+  ++  +    K + 
Sbjct: 591 YTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKML 650

Query: 62  N-------------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           +                               A ++F EM+  G+ P+V S++ ++H + 
Sbjct: 651 SDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFC 710

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           R+ + + +    N M ++G+     TYS ++   C  G+I+ A
Sbjct: 711 RSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA 753



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 54/107 (50%)

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ +  +LI MF    ++    E+   +   G   D+ +Y+ LI GLC K +  EA Q 
Sbjct: 8   PDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQL 67

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
           F+ M + G  P  + + TL +GL Q+  +     L +++  ++  +G
Sbjct: 68  FMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYG 114


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 135/273 (49%), Gaps = 20/273 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI  + K  +   AE    EM+ RG+ P+ +TY+ +++G C++  L           
Sbjct: 294 YNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDA--------- 344

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE +F  M  +G  PD+ +F+ ++  Y RA +    +  L+ M E G+     TY++++
Sbjct: 345 -AEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLI 403

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +  A++LL EMV +GVCP+  T N              A+++++ M++  + 
Sbjct: 404 HGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMD 463

Query: 182 V----------PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
           +          P++ +YNILI   +   +     E++ ++   G+ PD  +Y  +IHGLC
Sbjct: 464 IDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLC 523

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           ++ +  EA Q F  M  K   P  VTF TL  G
Sbjct: 524 KQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 556



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 135/275 (49%), Gaps = 22/275 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I G+CK NR+D AE     M  +G  P+++T+N L+ G CR           K + 
Sbjct: 329 YSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCR----------AKRVD 378

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  K+  EM   G+  +  +++ ++H + +      + D L  M   G+CP V T ++++
Sbjct: 379 DGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLL 438

Query: 122 KCLCSCGRIEDAEELLGEMVR-----------NGVCPSAETYNCFFKEYRGRKDANGAMK 170
             LC  G+++DA E+   M +           NGV P  +TYN              A +
Sbjct: 439 DGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEE 498

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           LY +M   G+ VP+  +YN +I      +R+D   ++++ +      P++ ++T LI+G 
Sbjct: 499 LYEEMPHRGI-VPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGY 557

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           C+  +  +  + F EM  +G++   +T+ TL  G 
Sbjct: 558 CKAGRVDDGLELFCEMGRRGIVANAITYITLIHGF 592



 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 148/312 (47%), Gaps = 32/312 (10%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           T +I G+C   R   A++ L EM+ER  + P+VVTYN L+N   +         FE    
Sbjct: 259 TCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKF-----FE---- 309

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+++DEM  RGI P   ++S ++  + + ++   +      M  KG  P + T+++++
Sbjct: 310 -AEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLI 368

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R++D  +LL EM   G+  +  TY      +    D N A  L ++M   G+C
Sbjct: 369 AGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVC 428

Query: 182 VPNMHSYNILIG-------------MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228
            PN+ + N L+              MF A+ +  M  +I      +G+ PD+ +Y +LI 
Sbjct: 429 -PNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKM--DIDASHPFNGVEPDVQTYNILIS 485

Query: 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDE 283
           GL  + K+ EA + + EM  +G++P  +T+ ++  GL +   L    ++      K    
Sbjct: 486 GLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSP 545

Query: 284 ESITFGSEFQNY 295
             +TF +    Y
Sbjct: 546 NVVTFTTLINGY 557



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 110/230 (47%), Gaps = 36/230 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           YT+LI+G+C++  ++ A+  L EM+  GV PNVVT N LL+G+C    L           
Sbjct: 399 YTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQ 458

Query: 51  ---------HPSERFEKTIRN----------------AEKVFDEMRVRGIEPDVTSFSIV 85
                    HP    E  ++                 AE++++EM  RGI PD  +++ V
Sbjct: 459 KSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSV 518

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           +H   +  +   +    + M  K   P V T+++++   C  GR++D  EL  EM R G+
Sbjct: 519 IHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGI 578

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
             +A TY      +R   + NGA+ ++++M   G+    +   N+L G++
Sbjct: 579 VANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLW 628



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 147/297 (49%), Gaps = 25/297 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+L+ G C+  R+  A   L  M+E G++PN +TY  +++G+C+      +      +R
Sbjct: 182 FTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNL---LR 238

Query: 62  NAEKVFDEMRVRGIEPDVTSFSI-----VLHVY---SRAHQPQLSLDKLNFMKEKGICPT 113
             E+V        I+P+V  + +     +++ +    R  + Q  L ++  ++ K I P 
Sbjct: 239 KMEEV------SHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEM--LERKKISPD 290

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           V TY++++      G+  +AEEL  EM+  G+ PS  TY+     +  +   + A  ++ 
Sbjct: 291 VVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFY 350

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
            M   G C P++ ++N LI  +    R+D   ++ +++  +GL  +  +YT LIHG C+ 
Sbjct: 351 LMATKG-CSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQV 409

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKK-KLDEES 285
                A     EM+  G+ P  VT  TL  GL  +    D L  ++ ++K K+D ++
Sbjct: 410 GDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDA 466



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 132/292 (45%), Gaps = 20/292 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T L+  +C  +++  A    G++ + G  P VVT++ LL+G+C           E  I 
Sbjct: 116 FTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLC----------VEDRIS 165

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F +M     +P+V +F+ +++   R  +   ++  L+ M E G+ P   TY ++V
Sbjct: 166 EALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIV 221

Query: 122 KCLCSCGRIEDAEELLGEMVR------NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
             +C  G    A  LL +M        N V    E   C    +      + A +L ++M
Sbjct: 222 DGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEM 281

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            E     P++ +YN LI  F+   +     E+++++   G+ P   +Y+ +I G C++ +
Sbjct: 282 LERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNR 341

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              A   F  M  KG  P  +TF TL  G  ++  +    +L  ++ E  + 
Sbjct: 342 LDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLV 393



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 120/268 (44%), Gaps = 24/268 (8%)

Query: 8   GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVF 67
           G+ +I  ++ A    G+M+     P+V+ +  L+  V R   L       +         
Sbjct: 52  GFHEIKGLEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHR--------- 102

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127
            +M +R +  +  SF+I++  +    +   +L     + + G  PTV T+S+++  LC  
Sbjct: 103 -KMEMRRVPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVE 161

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
            RI +A +L  +M +  V       N   +E R  +    A+ L  +M EDGL  PN  +
Sbjct: 162 DRISEALDLFHQMCKPNVVTFTTLMNGLCREGRVVE----AVALLDRMLEDGL-QPNQIT 216

Query: 188 YNILI-GM------FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           Y  ++ GM        ALN +  + E+ +      + P L+  T +I+G C   +W EA 
Sbjct: 217 YGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWP-LERRTCMINGFCSSGRWSEAQ 275

Query: 241 QYFVEMIE-KGLLPQKVTFETLYRGLIQ 267
           Q   EM+E K + P  VT+  L    ++
Sbjct: 276 QLLQEMLERKKISPDVVTYNALINAFVK 303



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 10/127 (7%)

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
           F E +G +DA   + L+  M      +P++  +  L+G+ + + R+D+V  +   ++   
Sbjct: 53  FHEIKGLEDA---IDLFGDMVRS-RPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRR 108

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           +  +  S+T+L+   C   K   A   F ++ + G  P  VTF TL  GL   D      
Sbjct: 109 VPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVED------ 162

Query: 276 RLKKKLD 282
           R+ + LD
Sbjct: 163 RISEALD 169


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 146/302 (48%), Gaps = 11/302 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+C+   ++ A    G+M  R ++P+ +TYN L+NG+C+      +ER    I
Sbjct: 192 IYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK------AER----I 241

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            NA+ +  EM+  G+ P V +F+ ++  Y R  Q +     L+ M+E G+ P V +Y S+
Sbjct: 242 TNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSI 301

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V   C  G+I +A  +L +M    V P+A+ YN     Y      + A  L  +MK +G+
Sbjct: 302 VNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGI 361

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +YN+LI      +++    EI N +    L PD  SY  LI   C +    +A 
Sbjct: 362 S-PSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKAL 420

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
                M + G+     T+  L  GL  +  L     L +K+ + ++   +   N   + Y
Sbjct: 421 DLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAY 480

Query: 301 RR 302
            +
Sbjct: 481 SK 482



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 121/260 (46%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G  K   ++   R   +M+  G++PN +TYNVLL+G+CR   +  +        
Sbjct: 53  YNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGET-------- 104

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + DEM  + + PD  ++SI+    SR    +  L       + G+     T S ++
Sbjct: 105 --SALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILL 162

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++  AEE+L  +V  G+ P+   YN     Y    +  GA   + QMK   + 
Sbjct: 163 NGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHI- 221

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN LI       R+   +++  +++ +G+ P ++++  LI       + ++   
Sbjct: 222 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 281

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              EM E GL P  V++ ++
Sbjct: 282 VLSEMQENGLKPNVVSYGSI 301



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 138/342 (40%), Gaps = 65/342 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA-SLHPSERFEKTI 60
           Y  L+ G C+  R+      L EM  + + P+  TY++L +G+ R   S      F K +
Sbjct: 88  YNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYL 147

Query: 61  RN------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +N                        AE+V   +   G+ P    ++ +++ Y +  + +
Sbjct: 148 KNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELE 207

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      MK + I P   TY++++  LC   RI +A++LL EM  NGV P+ ET+N   
Sbjct: 208 GAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLI 267

Query: 157 KEYRGRKDANGAMKLYRQMKEDGL----------------------------------CV 182
             Y           +  +M+E+GL                                   +
Sbjct: 268 DAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVL 327

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN   YN +I  ++     D    +   +K +G+ P + +Y +LI GLC + +  EA + 
Sbjct: 328 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 387

Query: 243 FVEMIEKGLLPQKVTFETL-----YRGLIQSDMLRTWRRLKK 279
              +    L+P  V++ TL     YRG I    L   +R+ K
Sbjct: 388 INSLSNHRLIPDAVSYNTLISACCYRGNIDK-ALDLQQRMHK 428



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 121/271 (44%), Gaps = 11/271 (4%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
           PN  +YNV++ G+ R               +A +VFDEM  R + P+  +++ ++  + +
Sbjct: 13  PNAFSYNVVIAGMWRAGRG----------GDAVEVFDEMTERAVLPNHITYNTMIDGHIK 62

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
               +      + M   G+ P   TY+ ++  LC  GR+ +   LL EM    + P   T
Sbjct: 63  GGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFT 122

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           Y+  F       D+   + L+ +  ++G+ + + ++ +IL+       ++ +  E+   +
Sbjct: 123 YSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGD-YTCSILLNGLCKDGKVSIAEEVLQSL 181

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
             +GL P    Y  LI+G C+  + + A   F +M  + + P  +T+  L  GL +++ +
Sbjct: 182 VNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERI 241

Query: 272 RTWRRLKKKLDEESITFGSEFQNYHFKPYRR 302
              + L  ++ +  +    E  N     Y R
Sbjct: 242 TNAQDLLMEMQDNGVNPTVETFNTLIDAYGR 272



 Score = 45.1 bits (105), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 37/155 (23%)

Query: 171 LYRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWND------------------- 210
           + R+M  DG   PN  SYN++I GM+ A    D V E++++                   
Sbjct: 1   MLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAV-EVFDEMTERAVLPNHITYNTMIDG 59

Query: 211 -VKGS---------------GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
            +KG                GL P+  +Y +L+ GLC   +  E      EM  + ++P 
Sbjct: 60  HIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPD 119

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
             T+  L+ GL ++   +    L  K  +  +T G
Sbjct: 120 GFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIG 154



 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 45/177 (25%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I  + +    D A   + +M   G+ P++VTYN+L+ G+C ++           I
Sbjct: 332 VYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQ----------I 381

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE++ + +    + PD  S++ ++           +LD    M + GI  TV TY  +
Sbjct: 382 SEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQL 441

Query: 121 VKCLCSCGRIED-----------------------------------AEELLGEMVR 142
           +  L   GR+ +                                   AE+L  EM++
Sbjct: 442 ISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQ 498


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  140 bits (352), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L  G CK   +D A   L EM  +G+E N+ TYN L+NG+C+  +          I 
Sbjct: 466 YTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGN----------ID 515

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+  +M V G  PD  +++ ++  Y ++ +   + + L  M ++ + PTV T++ ++
Sbjct: 516 QAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLM 575

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +ED E+LL  M+  G+ P+A TYN   K+Y  R +     ++YR M   G+ 
Sbjct: 576 NGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGV- 634

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+ ++YNILI        M     +  D+ G G    + SY  LI G  +++K+ EA +
Sbjct: 635 VPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARE 694

Query: 242 YFVEMIEKGLLPQK 255
            F +M  +GL+  +
Sbjct: 695 LFEQMRREGLVADR 708



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 132/263 (50%), Gaps = 11/263 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+LI G+CK+  +  A R   EM +R + P+ +TY  ++ G+C+             +
Sbjct: 360 IYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGR----------V 409

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+K+F EM  + +EPD  +++ ++  Y +  + + +    N M + G+ P + TY+++
Sbjct: 410 MEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTAL 469

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              LC CG ++ A ELL EM R G+  +  TYN          + + A+KL + M+  G 
Sbjct: 470 ADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGF 529

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  +Y  L+  +     M    E+   +    L P + ++ +L++G C     ++  
Sbjct: 530 -HPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGE 588

Query: 241 QYFVEMIEKGLLPQKVTFETLYR 263
           +    M+EKG++P   T+ +L +
Sbjct: 589 KLLKWMLEKGIMPNATTYNSLIK 611



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 136/284 (47%), Gaps = 12/284 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I G+C++  +    + + EM  +G++PN  TYN ++  +C+             + 
Sbjct: 291 YSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGK----------VA 340

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+V  EM   GI PD   ++ ++  + +      +    + M+++ I P   TY++V+
Sbjct: 341 EAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVI 400

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+ +A++L  EMV   + P   TY      Y        A  L+ QM + GL 
Sbjct: 401 CGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGL- 459

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  L         +D   E+ +++   GL  ++ +Y  L++GLC+     +A +
Sbjct: 460 TPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVK 519

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS-DMLRTWRRLKKKLDEE 284
              +M   G  P  VT+ TL     +S +M+R    L++ LD E
Sbjct: 520 LMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRE 563



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 131/266 (49%), Gaps = 11/266 (4%)

Query: 12  INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMR 71
           ++ I +A +   E  E GV  N  +YN++ + +C+             +  A ++  +M 
Sbjct: 231 LDGIKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGR----------VVEAHQLLLQME 280

Query: 72  VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIE 131
           +RG  PDV S+S V++ Y +  + Q  L  +  M+ KG+ P   TY+ V+  LC  G++ 
Sbjct: 281 LRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVA 340

Query: 132 DAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNIL 191
           +AE +L EM+  G+ P    Y      +    + + A +L+ +M++  +  P+  +Y  +
Sbjct: 341 EAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKIS-PDFITYTAV 399

Query: 192 IGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 251
           I       R+    ++++++    L PD  +YT LI G C++ K KEA     +M++ GL
Sbjct: 400 ICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGL 459

Query: 252 LPQKVTFETLYRGLIQSDMLRTWRRL 277
            P  VT+  L  GL +   + T   L
Sbjct: 460 TPNIVTYTALADGLCKCGEVDTANEL 485



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 25/179 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK--- 58
           YT+L+  +CK   +  A   L +M++R ++P VVT+NVL+NG C    L   E+  K   
Sbjct: 536 YTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWML 595

Query: 59  ----------------------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  +R   +++  M  +G+ PD  +++I++  + +A   +
Sbjct: 596 EKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMK 655

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
            +      M  KG   TV++Y++++K      +  +A EL  +M R G+    E YN F
Sbjct: 656 EAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIF 714


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  140 bits (352), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 141/277 (50%), Gaps = 11/277 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++I G CK   ++ A  F  EM  RG+ P+V+TY+ L+ G C    L          
Sbjct: 274 MYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQL---------- 323

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + +EM ++ I PDV +++I++    +  + + + + L  M ++G+ P V TYS++
Sbjct: 324 MGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTL 383

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G + +A+++   MV+  V PS  +YN         K  + AM L R+M    +
Sbjct: 384 MDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNV 443

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VPN  +YN LI       R+    ++  ++   G   D+ +YT L+ GLC+ Q   +A 
Sbjct: 444 -VPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAI 502

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
             F++M E+G+ P K T+  L  GL +   L+  ++L
Sbjct: 503 ALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKL 539



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 145/296 (48%), Gaps = 16/296 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI   CK  ++  A+  LG M + GV+PNVVTY+ L++G C    +H          
Sbjct: 345 YTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVH---------- 394

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA+++F  M    + P V S++I+++   +      +++ L  M  K + P   TY+S++
Sbjct: 395 NAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLI 454

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GRI  A +L+ E+   G      TY          ++ + A+ L+ +MKE G+ 
Sbjct: 455 DGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGI- 513

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN ++Y  LI       R+   ++++  +   G   D+ +Y ++I GLC++    EA  
Sbjct: 514 QPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALA 573

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG-SEFQNYH 296
              +M + G +P  VTFE + R L + D         +KL  E I  G   F+N+H
Sbjct: 574 MKSKMEDNGCIPDAVTFEIIIRSLFEKD----ENDKAEKLLHEMIAKGLLHFRNFH 625



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 134/280 (47%), Gaps = 46/280 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G CKI     A + L  + +R   P+VV YN +++G+C+          +K + 
Sbjct: 240 YGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCK----------DKLVN 289

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A   + EM  RGI PDV ++S ++  +  A Q   +   LN M  K I P V TY+ ++
Sbjct: 290 EAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILI 349

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++++A+ LLG M + GV P+  TY+                        DG C
Sbjct: 350 DALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLM---------------------DGYC 388

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
                    L+G       +   ++I++ +  + + P + SY ++I+GLC+ +   EA  
Sbjct: 389 ---------LVG------EVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMN 433

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
              EM+ K ++P  VT+ +L  GL +S  + +   L K+L
Sbjct: 434 LLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKEL 473



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 118/284 (41%), Gaps = 47/284 (16%)

Query: 16  DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI 75
           D   +F G ++ R   P+++ +  +L  + +           K    A  +  +M V+GI
Sbjct: 115 DAVSQFNGMLLMRNT-PSIIEFGKILGSLVKM----------KHFPTAISLSKQMEVKGI 163

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
           EPD+ + SI+++ +    Q   S   L  + + G  P     ++++K LC  G ++ +  
Sbjct: 164 EPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLH 223

Query: 136 LLGEMVR--------------NGVCPSAET---------------------YNCFFKEYR 160
              ++V               NG+C   ET                     YN       
Sbjct: 224 FHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLC 283

Query: 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
             K  N A   Y +M   G+  P++ +Y+ LI  F    ++     + N++    + PD+
Sbjct: 284 KDKLVNEAYDFYTEMNSRGI-FPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDV 342

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            +YT+LI  LC++ K KEA      M ++G+ P  VT+ TL  G
Sbjct: 343 YTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDG 386



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 1/156 (0%)

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           + DA      M+     PS   +          K    A+ L +QM+  G+  P++ + +
Sbjct: 113 VHDAVSQFNGMLLMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGI-EPDLVTLS 171

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
           ILI  F  L +M     +   +   G  P+    T L+ GLC K + K++  +  +++ +
Sbjct: 172 ILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQ 231

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           G    +V++ TL  GL +    R   +L + +++ S
Sbjct: 232 GFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRS 267


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  140 bits (352), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 150/310 (48%), Gaps = 27/310 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G+C   R   A+R L EM+ER + PNVVTY+ L+N   +          E+   
Sbjct: 287 YNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVK----------ERKFF 336

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+++DEM  RGI P+  +++ ++  + + ++   +      M  KG  P V T+++++
Sbjct: 337 EAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLI 396

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI+D  ELL EM   G+     TYN     +    D N A+ L +QM   G+C
Sbjct: 397 DGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVC 456

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGS-----------GLGPDLDSYTMLIHGL 230
            P++ + N L+       ++    E++  ++ S           G+ PD+ +Y +LI GL
Sbjct: 457 -PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGL 515

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEES 285
             + K+ EA + + EM  +G++P  +T+ ++  GL +   L    ++      K    + 
Sbjct: 516 INEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDV 575

Query: 286 ITFGSEFQNY 295
           +TF +    Y
Sbjct: 576 VTFNTLVSGY 585



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 132/275 (48%), Gaps = 22/275 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G+CK NR+D AE     M  +G  P+V T+N L++G C            K I 
Sbjct: 357 YNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCG----------AKRID 406

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++  EM   G+  D T+++ ++H +        +LD    M   G+CP + T ++++
Sbjct: 407 DGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLL 466

Query: 122 KCLCSCGRIEDAEELLGEMVR-----------NGVCPSAETYNCFFKEYRGRKDANGAMK 170
             LC  G+++DA E+   M +           NGV P  +TYN              A +
Sbjct: 467 DGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEE 526

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           LY++M   G+ VPN  +Y+ +I      +R+D   ++++ +      PD+ ++  L+ G 
Sbjct: 527 LYKEMPHRGI-VPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGY 585

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           C+  +  +  + F EM  +G++   +T+ TL  G 
Sbjct: 586 CKAGRVDDGLELFCEMGRRGIVADAITYITLIHGF 620



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 131/264 (49%), Gaps = 10/264 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+L+ G C+  R+  A   L  M+E G++PN +TY  +++G+C+            +  
Sbjct: 181 FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGD-------TVSAL 233

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N  +  +EM    I+P+V  +S ++    +  +   + +    M+EKGI P + TY+ ++
Sbjct: 234 NLLRKMEEM--SHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMI 291

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              CS GR  +A+ LL EM+   + P+  TY+     Y   +    A +LY +M   G+ 
Sbjct: 292 DGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGI- 350

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN  +YN +I  F   NR+D    ++  +   G  PD+ ++  LI G C  ++  +  +
Sbjct: 351 IPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTE 410

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
              EM E GL+    T+ TL  G 
Sbjct: 411 LLHEMTETGLVADTTTYNTLIHGF 434



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 125/258 (48%), Gaps = 6/258 (2%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G+C +  ++ A     +MI  GV P++VT N LL+G+C    L  +    K ++
Sbjct: 427 YNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 486

Query: 62  NAEKVFDEMR-VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            ++   D  R   G+EPDV +++I++       +   + +    M  +GI P   TYSS+
Sbjct: 487 KSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSM 546

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   R+++A ++   M      P   T+N     Y      +  ++L+ +M   G+
Sbjct: 547 INGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGI 606

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            V +  +Y  LI  F  +  ++   +I+ ++  SG+ PD  +   ++  L  K++ K A 
Sbjct: 607 -VADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRA- 664

Query: 241 QYFVEMIEKGLLPQKVTF 258
              V M+E   +   ++F
Sbjct: 665 ---VAMLEDLQMSMDLSF 679



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 118/257 (45%), Gaps = 14/257 (5%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           ++ R D+      +M  + +  +V ++N+L+   C  + L            A   F ++
Sbjct: 89  RMERPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLP----------FALSTFGKI 138

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
              G +PDV +FS +LH      +   +LD  + M      P V T+++++  LC  GR+
Sbjct: 139 TKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCR----PNVVTFTTLMNGLCREGRV 194

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
            +A  LL  MV +G+ P+  TY           D   A+ L R+M+E     PN+  Y+ 
Sbjct: 195 VEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSA 254

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           +I       R      ++ +++  G+ PDL +Y  +I G C   +W EA +   EM+E+ 
Sbjct: 255 IIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERK 314

Query: 251 LLPQKVTFETLYRGLIQ 267
           + P  VT+  L    ++
Sbjct: 315 INPNVVTYSALINAYVK 331


>gi|224093900|ref|XP_002310039.1| predicted protein [Populus trichocarpa]
 gi|222852942|gb|EEE90489.1| predicted protein [Populus trichocarpa]
          Length = 507

 Score =  140 bits (352), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 132/257 (51%), Gaps = 14/257 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ GW      + AE F  EM E GV+P++VTYN L++  C+           + + 
Sbjct: 217 FNILLSGW---KSSEEAELFYEEMKELGVKPDIVTYNSLIDVFCK----------GRELE 263

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V   MR   I PDV +++ ++       QP  + D L  MKE G  P VA Y++V+
Sbjct: 264 KAYGVVARMREEDILPDVITYTSIIGGLGLVGQPDKARDMLKEMKEHGCYPDVAAYNAVI 323

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C   R++ A  L+ EM   G+ P+A +YN FF+ +    D   +   Y +M + G C
Sbjct: 324 RNYCIAKRLDAAYSLMAEMESKGMSPNATSYNLFFRVFSWSNDLRNSWDFYGRMMDAG-C 382

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN  S   LI +F    +++M  ++WND+   G G  +    +L+  LC+  K  EA +
Sbjct: 383 LPNTQSCMFLIKLFKRHEKVEMALQLWNDMVEKGFGSYILVSDVLLGMLCDMGKLVEAEK 442

Query: 242 YFVEMIEKGLLPQKVTF 258
            F++M+EKG  P  V+F
Sbjct: 443 CFLQMVEKGHKPSNVSF 459



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 5/177 (2%)

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
           +KG  P + T++ ++    S    E+AE    EM   GV P   TYN     +   ++  
Sbjct: 207 KKGFRPNLQTFNILLSGWKSS---EEAELFYEEMKELGVKPDIVTYNSLIDVFCKGRELE 263

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            A  +  +M+E+ + +P++ +Y  +IG    + + D  R++  ++K  G  PD+ +Y  +
Sbjct: 264 KAYGVVARMREEDI-LPDVITYTSIIGGLGLVGQPDKARDMLKEMKEHGCYPDVAAYNAV 322

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR-TWRRLKKKLD 282
           I   C  ++   A     EM  KG+ P   ++   +R    S+ LR +W    + +D
Sbjct: 323 IRNYCIAKRLDAAYSLMAEMESKGMSPNATSYNLFFRVFSWSNDLRNSWDFYGRMMD 379



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 90/200 (45%), Gaps = 7/200 (3%)

Query: 103 NFMKEKGICPTVAT--YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160
           +F K K + P   T  ++++++ LC    + DA  +   + + G  P+ +T+N       
Sbjct: 167 SFWKFKRLVPVFDTSCFNALLRTLCQEKSMSDARNVYHHL-KKGFRPNLQTFNILLS--- 222

Query: 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
           G K +  A   Y +MKE G+  P++ +YN LI +F     ++    +   ++   + PD+
Sbjct: 223 GWKSSEEAELFYEEMKELGV-KPDIVTYNSLIDVFCKGRELEKAYGVVARMREEDILPDV 281

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK 280
            +YT +I GL    +  +A     EM E G  P    +  + R    +  L     L  +
Sbjct: 282 ITYTSIIGGLGLVGQPDKARDMLKEMKEHGCYPDVAAYNAVIRNYCIAKRLDAAYSLMAE 341

Query: 281 LDEESITFGSEFQNYHFKPY 300
           ++ + ++  +   N  F+ +
Sbjct: 342 MESKGMSPNATSYNLFFRVF 361


>gi|357115308|ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 570

 Score =  140 bits (352), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 139/277 (50%), Gaps = 11/277 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L++GWC+   ++ A   + EM E G  P+V+TY  L+   C           EK  +
Sbjct: 267 FNTLVHGWCQARMLNEARDTMKEMEEHGFSPSVITYTSLIEAYC----------MEKDFQ 316

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + +EM  +G  P+V +++IV+H   +A + Q +LD  + +K  G  P  + Y+S++
Sbjct: 317 TVYAILNEMCSKGCRPNVITYTIVMHALGKAGRTQEALDVFDKVKRDGCVPDASFYNSII 376

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+EDA  +  EM R G+ P+   +N           A  A+K+  +M+E   C
Sbjct: 377 YILGRAGRLEDANSVFDEMCRTGIPPTVAIFNTMISAACDHSQAENALKILVKMEEQS-C 435

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  L+ +      M ++  +   +    + PD  +Y +L+  LC   K  ++C 
Sbjct: 436 KPDIKTYTPLLKLCCKRQWMKILPFLICHMFRKDISPDFSTYILLVTWLCRNGKPAQSCL 495

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
           +  EM+ KG +P++ TF+ +   L + ++    ++++
Sbjct: 496 FLEEMVLKGFMPKQETFDLVMEKLDKGNLHSAKKKIQ 532



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 118/251 (47%), Gaps = 12/251 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           NR   A     +M + GV  +    N LL+ +C+          EK+++ A  VF E+R 
Sbjct: 209 NRWTDAIDAFNKMDQFGVVRDTKAMNALLDTLCK----------EKSVKRARGVFQELR- 257

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
             + PD +SF+ ++H + +A     + D +  M+E G  P+V TY+S+++  C     + 
Sbjct: 258 GVVPPDESSFNTLVHGWCQARMLNEARDTMKEMEEHGFSPSVITYTSLIEAYCMEKDFQT 317

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
              +L EM   G  P+  TY               A+ ++ ++K DG CVP+   YN +I
Sbjct: 318 VYAILNEMCSKGCRPNVITYTIVMHALGKAGRTQEALDVFDKVKRDG-CVPDASFYNSII 376

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
            +     R++    +++++  +G+ P +  +  +I   C+  + + A +  V+M E+   
Sbjct: 377 YILGRAGRLEDANSVFDEMCRTGIPPTVAIFNTMISAACDHSQAENALKILVKMEEQSCK 436

Query: 253 PQKVTFETLYR 263
           P   T+  L +
Sbjct: 437 PDIKTYTPLLK 447


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  140 bits (352), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 141/268 (52%), Gaps = 15/268 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I G CK  R D A     EM   GV P+V++Y  L++G CR              +
Sbjct: 642 YSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKW----------K 691

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A+ +F+EM   G++PDVT+FS+++ +  +  +   + + L  M ++G  P   TY+++V
Sbjct: 692 DAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLV 751

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED--- 178
           K LC   RI +A +L  +M + G  P   TY    K      +   A++L+++M  D   
Sbjct: 752 KGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQ 811

Query: 179 -GLCV-PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
            G    P++ SY+I+I       R D  RE++ ++K  G+ P++ SYT LIHG C   K 
Sbjct: 812 YGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKL 871

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRG 264
           ++A   F EM+++G+    VT+  +  G
Sbjct: 872 EDAKHLFNEMVDQGVQLNAVTYSVMIHG 899



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 139/265 (52%), Gaps = 15/265 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I G CK  R D A     EM  +G+ P+V++Y  L++G C       S ++EK   
Sbjct: 461 YSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCL------SGKWEK--- 511

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F+EM   GI+PDVT+ S+++ +  +  +   +   L  + ++G    V T +++V
Sbjct: 512 -AKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLV 570

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED--- 178
           K LC   RI  A +L  +M + G  P+  T     K      +   A++L++ M  D   
Sbjct: 571 KGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSP 630

Query: 179 -GL-CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
            G+ C PN  SY+I+I       R D  RE++ ++K  G+ PD+ SYT LIHG C   KW
Sbjct: 631 YGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKW 690

Query: 237 KEACQYFVEMIEKGLLPQKVTFETL 261
           K+A   F EM++ G+ P   TF  L
Sbjct: 691 KDAKYLFNEMVDIGVQPDVTTFSVL 715



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 136/265 (51%), Gaps = 8/265 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI G C  +RI  A +    M + G  P+ + Y  L+ G+C+   ++ +    + + 
Sbjct: 273 YSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEML 332

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N    +    ++ I PDVT+ S+++ +  +  +   + + L  M ++G    + TYS+++
Sbjct: 333 NDTSQYG---IKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLI 389

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED--- 178
           K LC   RI +A  L   M + G  P A TY    K      + N A++L+++M  D   
Sbjct: 390 KGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGR 449

Query: 179 -GL-CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
            G+ C P + SY+I+I       R D  RE++ ++K  G+ PD+ SYT LIHG C   KW
Sbjct: 450 YGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKW 509

Query: 237 KEACQYFVEMIEKGLLPQKVTFETL 261
           ++A   F EM++ G+ P   T   L
Sbjct: 510 EKAKCLFNEMLDVGIQPDVTTSSVL 534



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 155/333 (46%), Gaps = 52/333 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI+G+C   + + A+    EM++ G++P+V T +VL++ +C++            + 
Sbjct: 496 YTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGK----------VI 545

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVL------HVYSRAHQPQLSLDKLNFMKE-------- 107
            A K+ + +  RG   DV + + ++      H  S+A Q  L + KL  M          
Sbjct: 546 EANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLM 605

Query: 108 KGIC---------------------------PTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           KG+C                           P   +YS ++  LC CGR ++A EL  EM
Sbjct: 606 KGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEM 665

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
              GV P   +Y      +        A  L+ +M + G+  P++ ++++LI M     +
Sbjct: 666 KALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGV-QPDVTTFSVLIDMLCKEGK 724

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           +    E+   +   G  P+  +YT L+ GLC   +  EA Q F++M + G LP  VT+ T
Sbjct: 725 VIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGT 784

Query: 261 LYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQ 293
           L +GL Q+  ++T   L KK+  ++  +G+ F+
Sbjct: 785 LMKGLCQTGNIKTALELHKKMLSDTGQYGTNFK 817



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 160/325 (49%), Gaps = 38/325 (11%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T+L+ G C  +RI  A +   +M + G  PNVVT   L+ G+C+  ++  +    K + +
Sbjct: 567 TTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLS 626

Query: 63  -------------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
                                          A ++F EM+  G+ PDV S++ ++H + R
Sbjct: 627 DTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCR 686

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
           + + + +    N M + G+ P V T+S ++  LC  G++ +A ELL  M++ G  P+  T
Sbjct: 687 SGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVT 746

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALN---RMDMVREI 207
           Y    K        + A +L+ +M++ G C+P++ +Y  L+ G+    N    +++ +++
Sbjct: 747 YTTLVKGLCMNDRISEATQLFMKMQKLG-CLPDVVTYGTLMKGLCQTGNIKTALELHKKM 805

Query: 208 WNDVK--GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            +D    G+   PD+ SY+++I GLC+  +  EA + F EM   G++P  +++ +L  G 
Sbjct: 806 LSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGF 865

Query: 266 IQSDMLRTWRRLKKKLDEESITFGS 290
            +S  L   + L  ++ ++ +   +
Sbjct: 866 CRSGKLEDAKHLFNEMVDQGVQLNA 890



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 150/294 (51%), Gaps = 16/294 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I G CK  R D A     EM  +G+ P+V++Y  L++G C       S ++EK   
Sbjct: 168 YSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCH------SGKWEK--- 218

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F+EM   GI+PDVT+  +++ ++ +  +   + + L  M  +G    + TYS+++
Sbjct: 219 -AKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLI 277

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED--- 178
           K LC   RI +A +L   M + G  P A  Y    K        N A+ L+++M  D   
Sbjct: 278 KGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQ 337

Query: 179 -GL-CV-PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            G+ C+ P++ + ++LI +     ++    E+   +   G   D+ +Y+ LI GLC + +
Sbjct: 338 YGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHR 397

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
             EA   F+ M + G  P  +T+ TL +GL Q+  +    +L +++  ++  +G
Sbjct: 398 ISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYG 451



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 121/238 (50%), Gaps = 6/238 (2%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G+ P+  T+N+L+N +C    ++        I     + D +    I PDVT+ S+++ +
Sbjct: 5   GLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPD-IVTYSIRPDVTTSSMLIDI 63

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
             +  +   + + L  M ++G    + TYS+++K LC   RI +A  L   M + G  P 
Sbjct: 64  LCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPD 123

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKED----GL-CVPNMHSYNILIGMFMALNRMDM 203
           A TY    K      + N A++L+++M  D    G+ C P + SY+I+I       R D 
Sbjct: 124 AITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDE 183

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            RE++ ++K  G+ PD+ SYT LIHG C   KW++A   F EM++ G+ P   T   L
Sbjct: 184 ARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVL 241



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 155/332 (46%), Gaps = 44/332 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI G C  +RI  A      M + G  P+ +TY  L+ G+C+  +++ + +  + + 
Sbjct: 92  YSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEML 151

Query: 62  N-------------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           N                               A ++F EM+ +G+ PDV S++ ++H + 
Sbjct: 152 NDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFC 211

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
            + + + +    N M + GI P V T   ++   C  G++ +A ELL  MV  G      
Sbjct: 212 HSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIV 271

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV----RE 206
           TY+   K    +   + A +L+  MK+ G C P+  +Y  L+       ++++     +E
Sbjct: 272 TYSTLIKGLCMKHRISEATQLFMSMKKLG-CRPDAIAYGTLMKGLCQTGKINIALHLHQE 330

Query: 207 IWNDVKGSGLG---PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
           + ND    G+    PD+ + +MLI  LC++ K  EA +    MI++G +   VT+ TL +
Sbjct: 331 MLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIK 390

Query: 264 GLIQSDMLR--TWRRLK-KKLD--EESITFGS 290
           GL     +   TW  +  +KL    ++IT+G+
Sbjct: 391 GLCMEHRISEATWLFMSMQKLGCRPDAITYGT 422



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 134/291 (46%), Gaps = 17/291 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI   CK  ++  A   L  MI+RG   ++VTY+ L+ G+C           E  I  A 
Sbjct: 60  LIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLC----------MEHRISEAT 109

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL----DKLNFMKEKGI-C-PTVATYS 118
            +F  M+  G  PD  ++  ++    +     ++L    + LN     GI C PT+ +YS
Sbjct: 110 WLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYS 169

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++  LC   R ++A EL  EM   G+ P   +Y      +        A  L+ +M + 
Sbjct: 170 IIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDV 229

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P++ +  +LI MF    ++    E+   +   G   D+ +Y+ LI GLC K +  E
Sbjct: 230 GI-QPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISE 288

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
           A Q F+ M + G  P  + + TL +GL Q+  +     L +++  ++  +G
Sbjct: 289 ATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYG 339



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 31/163 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G C  +RI  A +   +M + G  P+VVTY  L+ G+C+  ++  +    K + 
Sbjct: 747 YTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKML 806

Query: 62  N-------------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           +                               A ++F EM+  G+ P+V S++ ++H + 
Sbjct: 807 SDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFC 866

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           R+ + + +    N M ++G+     TYS ++   C  G+I+ A
Sbjct: 867 RSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA 909



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 81/185 (43%), Gaps = 27/185 (14%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M+  G+ P   T++ ++ CLC+  R+ +    +  ++R G  P   TY+           
Sbjct: 1   MRLAGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIR--------- 51

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
                             P++ + ++LI +     ++    E+   +   G   D+ +Y+
Sbjct: 52  ------------------PDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYS 93

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            LI GLC + +  EA   F+ M + G  P  +T+ TL +GL Q+  +    +L +++  +
Sbjct: 94  TLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLND 153

Query: 285 SITFG 289
           +  +G
Sbjct: 154 TGRYG 158



 Score = 44.7 bits (104), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 14/122 (11%)

Query: 183 PNMHSYNILIGMFMALNRMD---------MVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           P+  ++NILI     + R++         M R    D+    + PD+ + +MLI  LC++
Sbjct: 8   PDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILCKE 67

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR--TWRRLK-KKLD--EESITF 288
            K  EA +    MI++G +   VT+ TL +GL     +   TW  +  +KL    ++IT+
Sbjct: 68  GKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITY 127

Query: 289 GS 290
           G+
Sbjct: 128 GT 129


>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 507

 Score =  140 bits (352), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 139/282 (49%), Gaps = 10/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI GW +   +   +    EM + G +P+VVTY +++N  C+      ++++++ I 
Sbjct: 228 YTILIEGWSQQQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCK------AKKYDEAI- 280

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               ++ +M  + + P    +   +       +   + +     K  G  P   TY++VV
Sbjct: 281 ---GIYHDMLSKNVNPSPHIYCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVV 337

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI+DA  ++GEM   G+ P+A TY+              A  ++++M  +  C
Sbjct: 338 SAYCWSMRIDDAYRIVGEMKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRMSSETGC 397

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y I++ MF   N++DM   +WN++K  G+ P +  ++ LI  LC + K  +AC+
Sbjct: 398 EPSVSTYAIMVRMFCNENQLDMAMVVWNEMKDKGILPGIHMFSTLIISLCHENKLDDACR 457

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           YF +M++ G+ P    F    R L+ + M  T     KK+D+
Sbjct: 458 YFQQMLDVGIRPTANMFSAFKRALMAAGMENTVIHFAKKVDK 499



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 118/272 (43%), Gaps = 47/272 (17%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           I  A +    M + G++P +  +N L++ +C+ +  H        +  A+++FD+MR   
Sbjct: 170 IKEALKTFERMEKYGLKPQISDFNKLIDVLCK-SKFH--------VEKAQELFDKMRQWN 220

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKL-NFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           +EP++ S++I++  +S+  Q  L +D++   MK+ G  P V TY  ++   C   + ++A
Sbjct: 221 LEPNLKSYTILIEGWSQ-QQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEA 279

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             +  +M+   V PS   Y C F    G    NG+                         
Sbjct: 280 IGIYHDMLSKNVNPSPHIY-CTFITGLG----NGS------------------------- 309

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
                 RMD   E +   K SG  P+  +Y  ++   C   +  +A +   EM E G+ P
Sbjct: 310 ------RMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIVGEMKELGIGP 363

Query: 254 QKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
              T++ +   LI+    +    + +++  E+
Sbjct: 364 NARTYDIILVHLIKGGRTKEAYSVFQRMSSET 395



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 38/199 (19%)

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC-S 126
           DEM+ R +  +  +FS++   Y RA   + +L     M++ G+ P ++ ++ ++  LC S
Sbjct: 144 DEMKQRKLL-NGDTFSLIARRYVRAKVIKEALKTFERMEKYGLKPQISDFNKLIDVLCKS 202

Query: 127 CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH 186
              +E A+EL  +M                                RQ   +    PN+ 
Sbjct: 203 KFHVEKAQELFDKM--------------------------------RQWNLE----PNLK 226

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
           SY ILI  +     +  V E+  ++K  G  PD+ +Y ++I+  C+ +K+ EA   + +M
Sbjct: 227 SYTILIEGWSQQQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDM 286

Query: 247 IEKGLLPQKVTFETLYRGL 265
           + K + P    + T   GL
Sbjct: 287 LSKNVNPSPHIYCTFITGL 305


>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 492

 Score =  140 bits (352), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 151/287 (52%), Gaps = 24/287 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L  G+C   R  MA R L EM++RG+EP +VTYN +L G  R             I+
Sbjct: 208 YNILANGYCLKKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFR----------SNQIK 257

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A + + EM+ R  E DV S++ V+H +  A + + +    + M ++G+ P VATY++++
Sbjct: 258 EAWEFYLEMKKRKCEIDVVSYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALI 317

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  C    +++A  +  EMVR GVC P+  T+N   +      D   A+    +M E GL
Sbjct: 318 QVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGL 377

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG-PDLDSYTMLIHGLCEKQKWKE- 238
              ++ +YN++I  F     ++   E++  + G GL  P+LD+Y +LI  +  ++K ++ 
Sbjct: 378 RA-SVQTYNVVIRYFCDAGEIEKGLEVFGKM-GDGLCLPNLDTYNVLISAMFVRKKSEDL 435

Query: 239 --ACQYFVEMIEKGLLPQKVTFETLYRGLI-------QSDMLRTWRR 276
             A +  +EM+E+G LP+K TF  +  GL+         D+LR   R
Sbjct: 436 VVAGKLLMEMVERGFLPRKFTFNRVLNGLVITGNQDFAKDILRMQSR 482



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 108/228 (47%), Gaps = 11/228 (4%)

Query: 51  HPSERFEKTIRNAEKVFD---------EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK 101
           H    F+  +  A ++ D          MR   + P   + +I+   Y+   +P  ++  
Sbjct: 99  HSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASIGKPHRAVRT 158

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
              M E G+   + ++++++  LC   R+E A +LL   +++   P   +YN     Y  
Sbjct: 159 FLSMHEHGLHQDLHSFNTLLDILCKSNRVETAHDLL-RTLKSRFRPDTVSYNILANGYCL 217

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
           +K    A+++ ++M + G+  P M +YN ++  +   N++    E + ++K      D+ 
Sbjct: 218 KKRTPMALRVLKEMVQRGI-EPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVV 276

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           SYT +IHG  E  + K+A + F EM+++G+ P   T+  L +   + D
Sbjct: 277 SYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKD 324


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 146/302 (48%), Gaps = 11/302 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+C+   ++ A    G+M  R ++P+ +TYN L+NG+C+      +ER    I
Sbjct: 240 IYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK------AER----I 289

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            NA+ +  EM+  G+ P V +F+ ++  Y R  Q +     L+ M+E G+ P V +Y S+
Sbjct: 290 TNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSI 349

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V   C  G+I +A  +L +M    V P+A+ YN     Y      + A  L  +MK +G+
Sbjct: 350 VNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGI 409

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +YN+LI      +++    EI N +    L PD  SY  LI   C +    +A 
Sbjct: 410 S-PSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKAL 468

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
                M + G+     T+  L  GL  +  L     L +K+ + ++   +   N   + Y
Sbjct: 469 DLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAY 528

Query: 301 RR 302
            +
Sbjct: 529 SK 530



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 123/260 (47%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G  K   ++   R   +M+  G++PN +TYNVLL+G+CR      + R  +T  
Sbjct: 101 YNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCR------AGRMGET-- 152

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + DEM  + + PD  ++SI+    SR    +  L       + G+     T S ++
Sbjct: 153 --SALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILL 210

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++  AEE+L  +V  G+ P+   YN     Y    +  GA   + QMK   + 
Sbjct: 211 NGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHI- 269

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN LI       R+   +++  +++ +G+ P ++++  LI       + ++   
Sbjct: 270 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 329

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              EM E GL P  V++ ++
Sbjct: 330 VLSEMQENGLKPNVVSYGSI 349



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 138/342 (40%), Gaps = 65/342 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA-SLHPSERFEKTI 60
           Y  L+ G C+  R+      L EM  + + P+  TY++L +G+ R   S      F K +
Sbjct: 136 YNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYL 195

Query: 61  RN------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +N                        AE+V   +   G+ P    ++ +++ Y +  + +
Sbjct: 196 KNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELE 255

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      MK + I P   TY++++  LC   RI +A++LL EM  NGV P+ ET+N   
Sbjct: 256 GAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLI 315

Query: 157 KEYRGRKDANGAMKLYRQMKEDGL----------------------------------CV 182
             Y           +  +M+E+GL                                   +
Sbjct: 316 DAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVL 375

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN   YN +I  ++     D    +   +K +G+ P + +Y +LI GLC + +  EA + 
Sbjct: 376 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 435

Query: 243 FVEMIEKGLLPQKVTFETL-----YRGLIQSDMLRTWRRLKK 279
              +    L+P  V++ TL     YRG I    L   +R+ K
Sbjct: 436 INSLSNHRLIPDAVSYNTLISACCYRGNIDK-ALDLQQRMHK 476



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 132/304 (43%), Gaps = 19/304 (6%)

Query: 7   YGWCKINRIDMAERFLGEMI--------ERGVEPNVVTYNVLLNGVCRRASLHPSERFEK 58
           + W K  +  +A   LGE +        +    PN  +YNV++ G+ R            
Sbjct: 28  FAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGG------- 80

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
              +A +VFDEM  R + P+  +++ ++  + +    +      + M   G+ P   TY+
Sbjct: 81  ---DAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYN 137

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++  LC  GR+ +   LL EM    + P   TY+  F       D+   + L+ +  ++
Sbjct: 138 VLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKN 197

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+ + + ++ +IL+       ++ +  E+   +  +GL P    Y  LI+G C+  + + 
Sbjct: 198 GVTIGD-YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEG 256

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
           A   F +M  + + P  +T+  L  GL +++ +   + L  ++ +  +    E  N    
Sbjct: 257 AFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLID 316

Query: 299 PYRR 302
            Y R
Sbjct: 317 AYGR 320



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 78/203 (38%), Gaps = 37/203 (18%)

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            L S GR  D     G +   G  P    +N   +      D   A+ + R+M  DG   
Sbjct: 1   ALLSLGRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPP 60

Query: 183 PNMHSYNILI-GMFMALNRMDMVREIWND--------------------VKGS------- 214
           PN  SYN++I GM+ A    D V E++++                    +KG        
Sbjct: 61  PNAFSYNVVIAGMWRAGRGGDAV-EVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFR 119

Query: 215 --------GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
                   GL P+  +Y +L+ GLC   +  E      EM  + ++P   T+  L+ GL 
Sbjct: 120 LRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLS 179

Query: 267 QSDMLRTWRRLKKKLDEESITFG 289
           ++   +    L  K  +  +T G
Sbjct: 180 RNGDSKAMLSLFGKYLKNGVTIG 202



 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 45/177 (25%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I  + +    D A   + +M   G+ P++VTYN+L+ G+C ++           I
Sbjct: 380 VYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQ----------I 429

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE++ + +    + PD  S++ ++           +LD    M + GI  TV TY  +
Sbjct: 430 SEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQL 489

Query: 121 VKCLCSCGRIED-----------------------------------AEELLGEMVR 142
           +  L   GR+ +                                   AE+L  EM++
Sbjct: 490 ISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQ 546


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 146/302 (48%), Gaps = 11/302 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+C+   ++ A    G+M  R ++P+ +TYN L+NG+C+      +ER    I
Sbjct: 377 IYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK------AER----I 426

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            NA+ +  EM+  G+ P V +F+ ++  Y R  Q +     L+ M+E G+ P V +Y S+
Sbjct: 427 TNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSI 486

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V   C  G+I +A  +L +M    V P+A+ YN     Y      + A  L  +MK +G+
Sbjct: 487 VNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGI 546

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +YN+LI      +++    EI N +    L PD  SY  LI   C +    +A 
Sbjct: 547 S-PSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKAL 605

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
                M + G+     T+  L  GL  +  L     L +K+ + ++   +   N   + Y
Sbjct: 606 DLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAY 665

Query: 301 RR 302
            +
Sbjct: 666 SK 667



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 123/260 (47%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G  K   ++   R   +M+  G++PN +TYNVLL+G+CR      + R  +T  
Sbjct: 238 YNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCR------AGRMGET-- 289

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + DEM  + + PD  ++SI+    SR    +  L       + G+     T S ++
Sbjct: 290 --SALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILL 347

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++  AEE+L  +V  G+ P+   YN     Y    +  GA   + QMK   + 
Sbjct: 348 NGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHI- 406

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN LI       R+   +++  +++ +G+ P ++++  LI       + ++   
Sbjct: 407 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 466

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              EM E GL P  V++ ++
Sbjct: 467 VLSEMQENGLKPNVVSYGSI 486



 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 138/342 (40%), Gaps = 65/342 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA-SLHPSERFEKTI 60
           Y  L+ G C+  R+      L EM  + + P+  TY++L +G+ R   S      F K +
Sbjct: 273 YNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYL 332

Query: 61  RN------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +N                        AE+V   +   G+ P    ++ +++ Y +  + +
Sbjct: 333 KNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELE 392

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      MK + I P   TY++++  LC   RI +A++LL EM  NGV P+ ET+N   
Sbjct: 393 GAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLI 452

Query: 157 KEYRGRKDANGAMKLYRQMKEDGL----------------------------------CV 182
             Y           +  +M+E+GL                                   +
Sbjct: 453 DAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVL 512

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN   YN +I  ++     D    +   +K +G+ P + +Y +LI GLC + +  EA + 
Sbjct: 513 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 572

Query: 243 FVEMIEKGLLPQKVTFETL-----YRGLIQSDMLRTWRRLKK 279
              +    L+P  V++ TL     YRG I    L   +R+ K
Sbjct: 573 INSLSNHRLIPDAVSYNTLISACCYRGNIDK-ALDLQQRMHK 613



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 132/304 (43%), Gaps = 19/304 (6%)

Query: 7   YGWCKINRIDMAERFLGEMI--------ERGVEPNVVTYNVLLNGVCRRASLHPSERFEK 58
           + W K  +  +A   LGE +        +    PN  +YNV++ G+ R            
Sbjct: 165 FAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRG-------- 216

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
              +A +VFDEM  R + P+  +++ ++  + +    +      + M   G+ P   TY+
Sbjct: 217 --GDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYN 274

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++  LC  GR+ +   LL EM    + P   TY+  F       D+   + L+ +  ++
Sbjct: 275 VLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKN 334

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+ + + ++ +IL+       ++ +  E+   +  +GL P    Y  LI+G C+  + + 
Sbjct: 335 GVTIGD-YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEG 393

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
           A   F +M  + + P  +T+  L  GL +++ +   + L  ++ +  +    E  N    
Sbjct: 394 AFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLID 453

Query: 299 PYRR 302
            Y R
Sbjct: 454 AYGR 457



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 87/214 (40%), Gaps = 37/214 (17%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P++++ + +++ L S GR  D     G +   G  P    +N   +      D   A+ +
Sbjct: 127 PSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGM 186

Query: 172 YRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWND-------------------- 210
            R+M  DG   PN  SYN++I GM+ A    D V E++++                    
Sbjct: 187 LRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAV-EVFDEMTERAVLPNHITYNTMIDGH 245

Query: 211 VKGS---------------GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
           +KG                GL P+  +Y +L+ GLC   +  E      EM  + ++P  
Sbjct: 246 IKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDG 305

Query: 256 VTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
            T+  L+ GL ++   +    L  K  +  +T G
Sbjct: 306 FTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIG 339



 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 45/177 (25%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I  + +    D A   + +M   G+ P++VTYN+L+ G+C ++           I
Sbjct: 517 VYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQ----------I 566

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE++ + +    + PD  S++ ++           +LD    M + GI  TV TY  +
Sbjct: 567 SEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQL 626

Query: 121 VKCLCSCGRIED-----------------------------------AEELLGEMVR 142
           +  L   GR+ +                                   AE+L  EM++
Sbjct: 627 ISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQ 683


>gi|125570550|gb|EAZ12065.1| hypothetical protein OsJ_01947 [Oryza sativa Japonica Group]
          Length = 348

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 135/249 (54%), Gaps = 11/249 (4%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           GV P VVTY  L+ G+C +       R ++ I     + DEMR  GIE ++ + + +++ 
Sbjct: 5   GVRPTVVTYGTLIEGLCVK------RRPDQAI----ALLDEMREEGIEANLLTCNPIVYA 54

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
            ++A + Q +   L      G+ P ++T++S+V   C  G +  A  +L  M   G+ P+
Sbjct: 55  LAQAGRFQDAHKVLEKFPLYGVAPNISTFNSLVMGYCKHGDLAGASSVLKVMTERGISPT 114

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             TYN FF  +    D    M  Y +M  +G   P+  +Y +L+ M    NR+++V ++ 
Sbjct: 115 TRTYNYFFMTFAKNSDVESGMNFYSKMIGNGYS-PDQLTYVLLVKMLSRANRLELVVQMI 173

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            +++  G  PDL + TMLIH LC + +++EAC  F +M ++G++PQ +T++ L R L + 
Sbjct: 174 QEMRTHGFEPDLATSTMLIHLLCRRHQFEEACAEFEDMFKRGIVPQYITYQKLMRELKRL 233

Query: 269 DMLRTWRRL 277
            ++   ++L
Sbjct: 234 GLVHLIQKL 242



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 25/164 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF-EKTI 60
           + SL+ G+CK   +  A   L  M ERG+ P   TYN       + + +     F  K I
Sbjct: 83  FNSLVMGYCKHGDLAGASSVLKVMTERGISPTTRTYNYFFMTFAKNSDVESGMNFYSKMI 142

Query: 61  RNA------------------------EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            N                          ++  EMR  G EPD+ + ++++H+  R HQ +
Sbjct: 143 GNGYSPDQLTYVLLVKMLSRANRLELVVQMIQEMRTHGFEPDLATSTMLIHLLCRRHQFE 202

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
            +  +   M ++GI P   TY  +++ L   G +   ++L   M
Sbjct: 203 EACAEFEDMFKRGIVPQYITYQKLMRELKRLGLVHLIQKLTNLM 246


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 135/290 (46%), Gaps = 26/290 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G C+ NRID A + L  M E G  P+VVTYN +++G+C+ + +  +    + +R
Sbjct: 414 YNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLR 473

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           N                         AEK+  EM   G  PDV +++I++H + +A Q  
Sbjct: 474 NGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLD 533

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            SL   + M +KG  PTV TYS V+  LC   R+ D   LL  M+  GV P A  Y    
Sbjct: 534 KSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVI 593

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A +LY+ MK+ G C P + +YN+L+     ++R+D    +   ++  G 
Sbjct: 594 DGLCKSDSYDEAYELYKLMKQTG-CAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGC 652

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
            PD  +Y  +  G  +  +  +A + F  M  +G  P    +  L   L+
Sbjct: 653 LPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLV 702



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 140/281 (49%), Gaps = 11/281 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+   CK  RI  A   L +MIE G  PNVVTYN L+NG C+  ++           
Sbjct: 239 YTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMD---------- 288

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F++M      PDV +++I++  Y +  +PQ     L  M + G  P   TY++++
Sbjct: 289 EAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLM 348

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G+  DA  L   M+R    PS  T+N     +      + A +L++ M + G C
Sbjct: 349 DSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRG-C 407

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++++YNI+I      NR+D  R++   +  +G  PD+ +Y  ++ GLC+  +  EA +
Sbjct: 408 LPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYE 467

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
            +  +   G     VT  TL  GL +S  L    +L ++++
Sbjct: 468 VYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREME 508



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 141/286 (49%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CK  R     + L EM++ G EPN +TYN L++      SL  S ++     
Sbjct: 309 YNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMD------SLVKSGKYIDAFN 362

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+     M  R  +P   +F++++ ++ +  Q  L+ +    M ++G  P + TY+ ++
Sbjct: 363 LAQM----MLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMI 418

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI+DA +LL  M   G  P   TYN            + A ++Y  ++  G  
Sbjct: 419 SGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYF 478

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++ + + LI       R+D   ++  +++ +G  PD+ +YT+LIHG C+  +  ++  
Sbjct: 479 L-DVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLA 537

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +F EM++KG +P  +T+  +   L +S  +R    L K + E  +T
Sbjct: 538 FFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVT 583



 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 11/218 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI+G+CK +++D +  F  EM+++G  P V+TY+++++ +C+ A           +R
Sbjct: 519 YTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSAR----------VR 568

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +   +   M  RG+ PD   ++ V+    ++     + +    MK+ G  PTV TY+ +V
Sbjct: 569 DGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLV 628

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R+++A  LL  M  +G  P   TYN  F  +    + + A +L++ MK  G C
Sbjct: 629 DKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRG-C 687

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
            P    Y++L+   +A  +MD   EIW +   +G   D
Sbjct: 688 SPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAGADVD 725



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 137/292 (46%), Gaps = 27/292 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR-----ASLH----- 51
           Y++LI G+CK      A R L EM +RG+ P+   YN ++ G+C       A +H     
Sbjct: 170 YSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ 229

Query: 52  ----PS--------ERFEKTIR--NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
               PS        +   K+ R  +A  + ++M   G  P+V +++ +++ + +      
Sbjct: 230 RNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDE 289

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           ++   N M E    P V TY+ ++   C   R +D  +LL EMV+ G  P+  TYN    
Sbjct: 290 AVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMD 349

Query: 158 EYRGRKDANGAMKLYRQM-KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                     A  L + M + D  C P+  ++N++I MF  + ++D+  E++  +   G 
Sbjct: 350 SLVKSGKYIDAFNLAQMMLRRD--CKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGC 407

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            PD+ +Y ++I G C   +  +A Q    M E G  P  VT+ ++  GL ++
Sbjct: 408 LPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKA 459



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 125/259 (48%), Gaps = 13/259 (5%)

Query: 11  KINRIDMAERFLGEMI-ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           +++ +D A +F      + G + +  T N LL+   R+          K  + A  +F  
Sbjct: 108 QLDDLDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRK----------KKAQEAYDLFKN 157

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
            R     PD  ++S +++ + +A   Q +   L+ M+++GI P  A Y++++K LC  GR
Sbjct: 158 HRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGR 217

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           ++ A     +M RN   PS  TY             + A  +   M E G C PN+ +YN
Sbjct: 218 VDSALVHYRDMQRN-CAPSVITYTILVDALCKSARISDASLILEDMIEAG-CAPNVVTYN 275

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            LI  F  L  MD    ++N +  +   PD+ +Y +LI G C++++ ++  +   EM++ 
Sbjct: 276 TLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKY 335

Query: 250 GLLPQKVTFETLYRGLIQS 268
           G  P  +T+ TL   L++S
Sbjct: 336 GCEPNFITYNTLMDSLVKS 354



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 7/184 (3%)

Query: 109 GIC-PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG 167
           G+C P   TYS+++   C     + A  LL EM + G+ P    YN   K        + 
Sbjct: 161 GLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDS 220

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           A+  YR M+ +  C P++ +Y IL+       R+     I  D+  +G  P++ +Y  LI
Sbjct: 221 ALVHYRDMQRN--CAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLI 278

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +G C+     EA   F +M+E    P   T+  L  G  + +  +       KL +E + 
Sbjct: 279 NGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDG----AKLLQEMVK 334

Query: 288 FGSE 291
           +G E
Sbjct: 335 YGCE 338



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 10/145 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTS+I G CK +  D A      M + G  P VVTYNVL++ +C+ + L          
Sbjct: 588 VYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLD--------- 638

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + + M   G  PD  +++ V   + ++ +   +      MK +G  PT   YS +
Sbjct: 639 -EAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLL 697

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGV 145
           +  L +  +++ A E+  E +  G 
Sbjct: 698 LTKLVAEEKMDQAMEIWEEALEAGA 722


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 145/285 (50%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI+G    N+   A   +  M+ RG +P++ TY  ++NG+C+R            I 
Sbjct: 189 FNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGD----------ID 238

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +M    IE +V  ++ ++    +      + D  N M+ KGI P V TY+S++
Sbjct: 239 LALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLI 298

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLC+ GR  DA  LL +M+   + P+  T+N     +        A KL+ +M +  + 
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSI- 357

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN LI  F   +R+D  ++I+  +      PD+ +Y  LI G C+ ++ +E  +
Sbjct: 358 DPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGME 417

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F EM ++GL+   VT+ TL +GL Q+      +++ KK+  + +
Sbjct: 418 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 462



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 143/283 (50%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI   C   R   A R L +MIER + PNVVT+N L++   +          E  + 
Sbjct: 294 YNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAK----------EGKLI 343

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK+FDEM  R I+P++ +++ +++ +    +   +      M  K   P V TY++++
Sbjct: 344 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 403

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R+E+  EL  EM + G+  +  TYN   +      D + A K++++M  DG+ 
Sbjct: 404 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV- 462

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+IL+       +++    ++  ++ S + P++ +Y ++I G+C+  K ++   
Sbjct: 463 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWD 522

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KG+ P  + + T+  G  +  +      L +++ E+
Sbjct: 523 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKED 565



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 138/279 (49%), Gaps = 17/279 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+  +C+ +++ +A   LG+M++ G EP++VT + LLNG C            K I 
Sbjct: 119 YSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCH----------GKRIS 168

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLH---VYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A  + D+M   G +PD  +F+ ++H   ++++A +    +D+   M  +G  P + TY 
Sbjct: 169 EAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDR---MVARGCQPDLFTYG 225

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +VV  LC  G I+ A  LL +M +  +  +   YN         K  + A  L+ +M+  
Sbjct: 226 TVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETK 285

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P++ +YN LI       R      + +D+    + P++ ++  LI    ++ K  E
Sbjct: 286 GI-KPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIE 344

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A + F EMI++ + P  VT+ +L  G    D L   +++
Sbjct: 345 AEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQI 383



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 135/299 (45%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ L+    K+N+ D+      +M   G+  N  TY++LLN  CRR+ L           
Sbjct: 84  FSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPL--------- 134

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V  +M   G EPD+ + S +L+ Y    +   ++  ++ M E G  P   T+++++
Sbjct: 135 -ALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLI 193

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L    +  +A  L+  MV  G  P   TY         R D + A+ L ++M E G  
Sbjct: 194 HGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM-EKGKI 252

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+  YN +I        MD   +++N ++  G+ PD+ +Y  LI  LC   +W +A +
Sbjct: 253 EANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASR 312

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
              +MIE+ + P  VTF +L     +   L    +L     ++ +D   +T+ S    +
Sbjct: 313 LLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGF 371



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 115/231 (49%), Gaps = 15/231 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK  R++       EM +RG+  N VTYN L+ G+ +               
Sbjct: 399 YNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDM--------- 449

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+K+F +M   G+ PD+ ++SI+L    +  + + +L    ++++  + P + TY+ ++
Sbjct: 450 -AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMI 508

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDG 179
           + +C  G++ED  +L   +   GV P+   Y      +  +G K+   A  L+R+MKEDG
Sbjct: 509 EGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA--LFREMKEDG 566

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
             +P+   YN LI   +         E+  +++  G   D  + +M+I+ L
Sbjct: 567 -TLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINML 616



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 104/231 (45%), Gaps = 3/231 (1%)

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           E  + +A  +F EM      P +  FS +L   ++ ++  + +     M+  GI     T
Sbjct: 59  ELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYT 118

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           YS ++ C C   ++  A  +LG+M++ G  P   T +     Y   K  + A+ L  QM 
Sbjct: 119 YSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMV 178

Query: 177 EDGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           E G   P+  ++N LI G+F+  N+      + + +   G  PDL +Y  +++GLC++  
Sbjct: 179 EMGY-KPDTVTFNTLIHGLFLH-NKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGD 236

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              A     +M +  +    V + T+  GL +   +     L  K++ + I
Sbjct: 237 IDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGI 287


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 140/273 (51%), Gaps = 17/273 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++LI  + K  ++  A+    EMI RG+ P+ +TYN L++G C+   LH          
Sbjct: 318 FSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLH---------- 367

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++FD M  +G EPD+ ++SI+++ Y +A +    +     +  KG+ P   TY+++V
Sbjct: 368 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 427

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++  A+EL  EMV  GV PS  TY           + N A++++ +M++  + 
Sbjct: 428 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT 487

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +  +  YNI+I      +++D    ++  +   G+ PD+ +Y ++I GLC+K    EA  
Sbjct: 488 L-GIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADM 546

Query: 242 YFVEMIEKGLLPQKVTFETLYR------GLIQS 268
            F +M E G  P   T+  L R      GLI S
Sbjct: 547 LFRKMKEDGCTPDDFTYNILIRAHLGGSGLISS 579



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 145/317 (45%), Gaps = 26/317 (8%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA-SLHPSERFEK--- 58
           ++LI G C   R+  A   +  M+E G +P+ VTY  +LN +C+   S    + F K   
Sbjct: 179 STLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEE 238

Query: 59  ---------------------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
                                +  +A  +F+EM ++GI+ DV ++S ++       +   
Sbjct: 239 RNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDD 298

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
               L  M  + I P V T+S+++      G++ +A+EL  EM+  G+ P   TYN    
Sbjct: 299 GAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID 358

Query: 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
            +      + A +++  M   G C P++ +Y+ILI  +    R+D    ++ ++   GL 
Sbjct: 359 GFCKENCLHEANQMFDLMVSKG-CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLI 417

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           P+  +Y  L+ G C+  K   A + F EM+ +G+ P  VT+  L  GL  +  L     +
Sbjct: 418 PNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEI 477

Query: 278 KKKLDEESITFGSEFQN 294
            +K+ +  +T G    N
Sbjct: 478 FEKMQKSRMTLGIGIYN 494



 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 141/294 (47%), Gaps = 16/294 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++L+ G+C   R+  A   +  M+E    P++VT + L+NG+C +            + 
Sbjct: 143 FSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGR----------VS 192

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D M   G +PD  ++  VL+   ++    L+LD    M+E+ I  +V  YS V+
Sbjct: 193 EALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVI 252

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G  +DA  L  EM   G+     TY+            +   K+ R+M    + 
Sbjct: 253 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNI- 311

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +++ LI +F+   ++   +E++N++   G+ PD  +Y  LI G C++    EA Q
Sbjct: 312 IPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQ 371

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKKK-LDEESITFGS 290
            F  M+ KG  P  VT+  L     ++    D +R +R +  K L   +IT+ +
Sbjct: 372 MFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNT 425



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 120/247 (48%), Gaps = 15/247 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI  +CK  R+D   R   E+  +G+ PN +TYN L+ G C+   L+          
Sbjct: 388 YSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNA--------- 438

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++F EM  RG+ P V ++ I+L       +   +L+    M++  +   +  Y+ ++
Sbjct: 439 -AKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIII 497

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C+  +++DA  L   +   GV P   TYN        +   + A  L+R+MKEDG C
Sbjct: 498 HGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG-C 556

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YNILI   +  + +    E+  ++K  G   D  +  M+I  L +++  K    
Sbjct: 557 TPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDRRLDKS--- 613

Query: 242 YFVEMIE 248
            F++M+ 
Sbjct: 614 -FLDMLS 619



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 135/302 (44%), Gaps = 22/302 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L     +  + D+   F   M   G+E ++ T  +++N  CR+          K + 
Sbjct: 73  FNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRK----------KKLL 122

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVY---SRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A  V       G EPD  +FS +++ +    R  +    +D++  MK++   P + T S
Sbjct: 123 FAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQR---PDLVTVS 179

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++  LC  GR+ +A  L+  MV  G  P   TY           ++  A+ L+R+M+E 
Sbjct: 180 TLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEER 239

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
            +   ++  Y+I+I         D    ++N+++  G+  D+ +Y+ LI GLC   KW +
Sbjct: 240 NI-KASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDD 298

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQ 293
             +   EMI + ++P  VTF  L    ++   L   + L      + +  ++IT+ S   
Sbjct: 299 GAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID 358

Query: 294 NY 295
            +
Sbjct: 359 GF 360



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 15/121 (12%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  +I+G C  +++D A      + ++GV+P+VVTYNV++ G+C++ SL          
Sbjct: 492 IYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLS--------- 542

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL-DKLNFMKEKGICPTVATYSS 119
             A+ +F +M+  G  PD  +++I++    RAH     L   +  ++E  +C   A  S+
Sbjct: 543 -EADMLFRKMKEDGCTPDDFTYNILI----RAHLGGSGLISSVELIEEMKVCGFSADSST 597

Query: 120 V 120
           +
Sbjct: 598 I 598


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 145/290 (50%), Gaps = 28/290 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           YT+L++  CK  + D A+  L EMI RG  P+ VT++ L++G+C+  S   + R      
Sbjct: 81  YTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVI 140

Query: 56  ----------FEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                     FE  I+           A KV   +  +G  P V  F++V++ + +A   
Sbjct: 141 QRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDL 200

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +   L  M EKG  P V T++ ++  LC   R+ +A++LL +MV  G  P+  TY+  
Sbjct: 201 DSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTV 260

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                 +   + A +L+ Q+ E   C PN+ ++NILI       R++  R++++ ++ +G
Sbjct: 261 INGLCKQGQVDDAYELF-QLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETG 319

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL-LPQKVTFETLYRG 264
             PD+ +Y  LI GLC+  +  EA Q F  + E G+     VT+ TL+ G
Sbjct: 320 CAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHG 369



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 127/269 (47%), Gaps = 10/269 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+  +I G+CK   +D A + L  MIE+G  PNV T+ +L+ G+C+             +
Sbjct: 186 MFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCK----------ANRV 235

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++ ++M   G  P+V ++S V++   +  Q   + +    M+ +   P V T++ +
Sbjct: 236 GEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNIL 295

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   RIE+A +L   M   G  P   TYN            + A +L++ + E G+
Sbjct: 296 IDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGV 355

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              N  +Y+ L   + AL RM     I++ +   G  PDL +YT LI   C+  +  E  
Sbjct: 356 SAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVV 415

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           +   EM  KG  P+  T   +  GL + +
Sbjct: 416 ELVEEMASKGFPPRVNTLSAVLGGLFEGN 444



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 143/285 (50%), Gaps = 15/285 (5%)

Query: 1   MYTSLIYGWCKINRI-DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           ++T+L+ G C   R+ +  E F    + +   P+V+TY  L++ +C+      + +F++ 
Sbjct: 46  VHTTLMKGLCDAGRVVEALEHF--RAMAKDCAPDVMTYTALVHALCK------AGKFDE- 96

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
              A+ +  EM  RG  PD  +FS ++    +    + +   L  + ++G+  + A + +
Sbjct: 97  ---AQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFET 153

Query: 120 VVKCLCS-CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++ LC+    +E A ++LG ++  G  P+   +N     +   KD + A KL   M E 
Sbjct: 154 IIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEK 213

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G CVPN+ ++ ILI      NR+   +++   +   G  P++ +Y+ +I+GLC++ +  +
Sbjct: 214 G-CVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDD 272

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           A + F  M  +   P  VT   L  GL ++  +   R+L  ++ E
Sbjct: 273 AYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRE 317



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 122/263 (46%), Gaps = 14/263 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI  +CK +R       + EM  +G  P V T + +L G      L      E+ I 
Sbjct: 398 YTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGG------LFEGNHTERAI- 450

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA--HQPQLS-LDKLNFMKEKGICPTVATYS 118
              ++FD M  RG   D   +++V+   +RA  H   L+ L+++   +++   P+ +   
Sbjct: 451 ---QLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVD 507

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           ++V+ LC  GR +DA++LL +M   G   +  +YN         +  + A +++  M   
Sbjct: 508 ALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSA 567

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G   P + + N++I    +  ++D   E+   +   G  PD+++   LI G C+  +   
Sbjct: 568 GP-APEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADL 626

Query: 239 ACQYFVEMIEKGLLPQKVTFETL 261
           A +   EM E GL P   T + L
Sbjct: 627 ARKLLEEMTEAGLEPNDTTHDLL 649



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 136/346 (39%), Gaps = 65/346 (18%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI---- 60
           LI G CK  RI+ A +    M E G  P+++TYN L++G+C+   +  + +  +TI    
Sbjct: 295 LIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESG 354

Query: 61  ----------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLS 98
                                  +A ++F  +  +G  PD+ +++ ++  Y +  +    
Sbjct: 355 VSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEV 414

Query: 99  LDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK- 157
           ++ +  M  KG  P V T S+V+  L      E A +L   M   G    A  YN   + 
Sbjct: 415 VELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEG 474

Query: 158 ------------------EYRGRK--------DA-----------NGAMKLYRQMKEDGL 180
                             + R RK        DA           + A +L  +M E G 
Sbjct: 475 MARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGF 534

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
               + SYN L+     L R D   +++  +  +G  P++ +  ++I  LC   K  +A 
Sbjct: 535 AAA-VSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAY 593

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +    M + G  P   T  TL  G  +S      R+L +++ E  +
Sbjct: 594 ELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGL 639



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 38/241 (15%)

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           P+  ++ I++  +S A    +++  L  MK  G       +++++K LC  GR+ +A E 
Sbjct: 7   PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEH 66

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG--- 193
              M ++   P   TY             + A  + R+M   G C P+  +++ LI    
Sbjct: 67  FRAMAKD-CAPDVMTYTALVHALCKAGKFDEAQGMLREMIARG-CAPDTVTFSTLIDGLC 124

Query: 194 -------MFMAL--------------------------NRMDMVREIWNDVKGSGLGPDL 220
                   F  L                          N +++  ++   V   G  P +
Sbjct: 125 KFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTV 184

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK 280
             + ++I+G C+ +    A +    MIEKG +P   TF  L  GL +++ +   ++L +K
Sbjct: 185 LMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEK 244

Query: 281 L 281
           +
Sbjct: 245 M 245



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 34/120 (28%)

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL----------------------- 216
           +C+PN  +Y ILI  F +   +D+  ++  ++K +G                        
Sbjct: 4   ICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEA 63

Query: 217 -----------GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
                       PD+ +YT L+H LC+  K+ EA     EMI +G  P  VTF TL  GL
Sbjct: 64  LEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGL 123


>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 565

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 146/282 (51%), Gaps = 11/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GW     + M +    EM++ G++P+VV Y +L++  C+      S + ++ I 
Sbjct: 287 YTVLMEGWGHEKDLLMLKSVYQEMLDAGLQPDVVAYGMLISSFCK------SGKCDEAI- 339

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              KVF EM   G  P    + ++++      +   +L      K  G    V T ++VV
Sbjct: 340 ---KVFREMETNGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVV 396

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   + + A +++ EM ++G+ P++ TY+         +    A  +++ M +DG C
Sbjct: 397 GAYCRSSKFQHAFKMVDEMRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMSKDG-C 455

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P +++Y +++GMF +  R+D+  ++WN +K  G+ P +  ++ LI+GLC + + +EAC 
Sbjct: 456 EPQLNTYTMMVGMFCSNERVDVALKVWNQMKEKGVLPCMHMFSALINGLCFENRLEEACA 515

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           YF EM+++G+ P    F  L   LI+   +   + +  KLDE
Sbjct: 516 YFQEMLDRGIRPPGQLFSNLKEALIEGGRISLAQEMALKLDE 557



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 90/195 (46%), Gaps = 1/195 (0%)

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
           R +G      SF  ++    +  Q +L    +  M+ +G+  +  T+  +V+      ++
Sbjct: 171 RQQGFVYTADSFHNLIEALGKIKQFRLVWSLVEAMRCRGLL-SKDTFRLIVRRYARARKV 229

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           ++A E   +M   G+      YN         K    A  ++++MK +G  VP++ +Y +
Sbjct: 230 KEAVETFEKMAGFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTV 289

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           L+  +     + M++ ++ ++  +GL PD+ +Y MLI   C+  K  EA + F EM   G
Sbjct: 290 LMEGWGHEKDLLMLKSVYQEMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFREMETNG 349

Query: 251 LLPQKVTFETLYRGL 265
            +P    +  L  GL
Sbjct: 350 CMPSPHVYCMLINGL 364


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 144/285 (50%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+   CK +    A + L EM ++G  P++VTYNV++NG+C+   +  +  F K + 
Sbjct: 70  YTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLP 129

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +           G EP+  S++IVL     A + + + + +  M +KG  P V T++ ++
Sbjct: 130 S----------YGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLI 179

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +E A E+L ++ + G  P++ +YN     +  +K  + AM     M   G C
Sbjct: 180 SFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG-C 238

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SYN L+        +D+  E+ + +K  G  P L SY  +I GL +  K KEA +
Sbjct: 239 YPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALE 298

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM+ KGL P  +T+ T+  GL + D +    R   K+ +  I
Sbjct: 299 LLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGI 343



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 138/284 (48%), Gaps = 14/284 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G+C   ++D A R + EM    VEP+  TYN L+ G+C R              
Sbjct: 3   YNAMVAGYCGAGQLDAARRLVAEM---PVEPDAYTYNTLIRGLCGRGR----------TA 49

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA  V DEM  R   PDV +++I+L    +    + ++  L+ M++KG  P + TY+ VV
Sbjct: 50  NALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVV 109

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  GR++DA E L  +   G  P+  +YN   K     +    A +L  +M + G C
Sbjct: 110 NGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKG-C 168

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ ++N+LI        ++   E+   +   G  P+  SY  L+H  C+++K  +A  
Sbjct: 169 PPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMA 228

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           +   M+ +G  P  V++ TL   L +S  +     L  +L ++ 
Sbjct: 229 FLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKG 272



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 133/264 (50%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++ G C+  R+D A  FL  +   G EPN V+YN++L G+C       +ER+E    
Sbjct: 105 YNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCT------AERWE---- 154

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE++  EM  +G  P+V +F++++    R    + +L+ L  + + G  P   +Y+ ++
Sbjct: 155 DAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLL 214

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   +++ A   L  MV  G  P   +YN          + + A++L  Q+K+ G C
Sbjct: 215 HAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKG-C 273

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + SYN +I       +     E+ N++   GL PD+ +Y+ +  GLC + + ++A +
Sbjct: 274 APVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIR 333

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F ++ + G+ P  V +  +  GL
Sbjct: 334 AFGKVQDMGIRPNTVLYNAIILGL 357



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 130/274 (47%), Gaps = 26/274 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  ++ G C   R + AE  +GEM ++G  PNVVT+N+L++ +CR+  + P+        
Sbjct: 140 YNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIP 199

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +K +  A    D M  RG  PD+ S++ +L    R+ +  
Sbjct: 200 KYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 259

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           ++++ L+ +K+KG  P + +Y++V+  L   G+ ++A ELL EMV  G+ P   TY+   
Sbjct: 260 VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIA 319

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      A++ + ++++ G+  PN   YN +I             +++  + G+G 
Sbjct: 320 AGLCREDRIEDAIRAFGKVQDMGI-RPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGC 378

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
            P+  +YT+LI GL  +   KEA     E+  + 
Sbjct: 379 MPNESTYTILIEGLAYEGLIKEARDLLDELCSRA 412



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
           +YN ++  +    ++D  R +  ++    + PD  +Y  LI GLC + +   A     EM
Sbjct: 2   AYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDEM 58

Query: 247 IEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           + +  +P  VT+  L     +      +++  K LDE
Sbjct: 59  LRRRCVPDVVTYTILLEATCKRS---GYKQAMKLLDE 92


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 140/273 (51%), Gaps = 17/273 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++LI  + K  ++  A+    EMI RG+ P+ +TYN L++G C+   LH          
Sbjct: 347 FSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLH---------- 396

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++FD M  +G EPD+ ++SI+++ Y +A +    +     +  KG+ P   TY+++V
Sbjct: 397 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 456

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++  A+EL  EMV  GV PS  TY           + N A++++ +M++  + 
Sbjct: 457 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT 516

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +  +  YNI+I      +++D    ++  +   G+ PD+ +Y ++I GLC+K    EA  
Sbjct: 517 L-GIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADM 575

Query: 242 YFVEMIEKGLLPQKVTFETLYR------GLIQS 268
            F +M E G  P   T+  L R      GLI S
Sbjct: 576 LFRKMKEDGCTPDDFTYNILIRAHLGGSGLISS 608



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 145/317 (45%), Gaps = 26/317 (8%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA-SLHPSERFEK--- 58
           ++LI G C   R+  A   +  M+E G +P+ VTY  +LN +C+   S    + F K   
Sbjct: 208 STLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEE 267

Query: 59  ---------------------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
                                +  +A  +F+EM ++GI+ DV ++S ++       +   
Sbjct: 268 RNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDD 327

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
               L  M  + I P V T+S+++      G++ +A+EL  EM+  G+ P   TYN    
Sbjct: 328 GAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID 387

Query: 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
            +      + A +++  M   G C P++ +Y+ILI  +    R+D    ++ ++   GL 
Sbjct: 388 GFCKENCLHEANQMFDLMVSKG-CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLI 446

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           P+  +Y  L+ G C+  K   A + F EM+ +G+ P  VT+  L  GL  +  L     +
Sbjct: 447 PNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEI 506

Query: 278 KKKLDEESITFGSEFQN 294
            +K+ +  +T G    N
Sbjct: 507 FEKMQKSRMTLGIGIYN 523



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 141/294 (47%), Gaps = 16/294 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++L+ G+C   R+  A   +  M+E    P++VT + L+NG+C +            + 
Sbjct: 172 FSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGR----------VS 221

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D M   G +PD  ++  VL+   ++    L+LD    M+E+ I  +V  YS V+
Sbjct: 222 EALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVI 281

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G  +DA  L  EM   G+     TY+            +   K+ R+M    + 
Sbjct: 282 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNI- 340

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +++ LI +F+   ++   +E++N++   G+ PD  +Y  LI G C++    EA Q
Sbjct: 341 IPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQ 400

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKKK-LDEESITFGS 290
            F  M+ KG  P  VT+  L     ++    D +R +R +  K L   +IT+ +
Sbjct: 401 MFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNT 454



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 120/247 (48%), Gaps = 15/247 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI  +CK  R+D   R   E+  +G+ PN +TYN L+ G C+   L+          
Sbjct: 417 YSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNA--------- 467

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++F EM  RG+ P V ++ I+L       +   +L+    M++  +   +  Y+ ++
Sbjct: 468 -AKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIII 526

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C+  +++DA  L   +   GV P   TYN        +   + A  L+R+MKEDG C
Sbjct: 527 HGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG-C 585

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YNILI   +  + +    E+  ++K  G   D  +  M+I  L +++  K    
Sbjct: 586 TPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDRRLDKS--- 642

Query: 242 YFVEMIE 248
            F++M+ 
Sbjct: 643 -FLDMLS 648



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 135/302 (44%), Gaps = 22/302 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L     +  + D+   F   M   G+E ++ T  +++N  CR+          K + 
Sbjct: 102 FNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRK----------KKLL 151

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVY---SRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A  V       G EPD  +FS +++ +    R  +    +D++  MK++   P + T S
Sbjct: 152 FAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQR---PDLVTVS 208

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++  LC  GR+ +A  L+  MV  G  P   TY           ++  A+ L+R+M+E 
Sbjct: 209 TLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEER 268

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
            +   ++  Y+I+I         D    ++N+++  G+  D+ +Y+ LI GLC   KW +
Sbjct: 269 NI-KASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDD 327

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQ 293
             +   EMI + ++P  VTF  L    ++   L   + L      + +  ++IT+ S   
Sbjct: 328 GAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID 387

Query: 294 NY 295
            +
Sbjct: 388 GF 389



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 15/121 (12%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  +I+G C  +++D A      + ++GV+P+VVTYNV++ G+C++ SL          
Sbjct: 521 IYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLS--------- 571

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL-DKLNFMKEKGICPTVATYSS 119
             A+ +F +M+  G  PD  +++I++    RAH     L   +  ++E  +C   A  S+
Sbjct: 572 -EADMLFRKMKEDGCTPDDFTYNILI----RAHLGGSGLISSVELIEEMKVCGFSADSST 626

Query: 120 V 120
           +
Sbjct: 627 I 627


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 138/308 (44%), Gaps = 55/308 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G+C   R   AE+ L EM+ER + P+VVTYN L+N   +         FE    
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF-----FE---- 343

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +++DEM  RGI P+  +++ ++  + +  +   + D    M  KG  P V T+++++
Sbjct: 344 -AAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLI 402

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI+D  ELL EM R G+  +  TYN     +    D N A+ L +QM   G+C
Sbjct: 403 DGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVC 462

Query: 182 V---------------------------------------------PNMHSYNILIGMFM 196
                                                         P++ +YNILI   +
Sbjct: 463 PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLI 522

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
              +     E++ ++   G+ PD  +Y+ +I GLC++ +  EA Q FV M  K   P  V
Sbjct: 523 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVV 582

Query: 257 TFETLYRG 264
           TF TL  G
Sbjct: 583 TFNTLING 590



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 138/290 (47%), Gaps = 27/290 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------------- 48
           +T+L++G C  +R+  A  F  +M E    PNVVT+  L+NG+CR               
Sbjct: 152 FTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMM 211

Query: 49  --SLHPSERFEKTIRN----------AEKVFDEMR-VRGIEPDVTSFSIVLHVYSRAHQP 95
              L P++    TI +          A  +  +M  V  I P+V  +S ++    +  + 
Sbjct: 212 EDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRH 271

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             + +    M+EKGI P + TY+S++   CS GR  DAE+LL EM+   + P   TYN  
Sbjct: 272 SDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNAL 331

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +        A +LY +M   G+ +PN  +YN +I  F   +R+D   +++  +   G
Sbjct: 332 INAFVKEGKFFEAAELYDEMLPRGI-IPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKG 390

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
             PD+ ++T LI G C  ++  +  +   EM  +GL+   VT+ TL  G 
Sbjct: 391 CSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGF 440



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 122/257 (47%), Gaps = 10/257 (3%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           ++ R D+      +M  + +  ++ ++N+L+   C  + L            A   F ++
Sbjct: 91  RMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLP----------FALSTFGKI 140

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
              G+ PDV +F+ +LH      +   +LD  + M E    P V T+++++  LC  GRI
Sbjct: 141 TKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRI 200

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
            +A  LL  M+ +G+ P+  TY         + D   A+ L R+M+E    +PN+  Y+ 
Sbjct: 201 VEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSA 260

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           +I       R    + ++ +++  G+ PDL +Y  +I G C   +W +A Q   EM+E+ 
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 251 LLPQKVTFETLYRGLIQ 267
           + P  VT+  L    ++
Sbjct: 321 ISPDVVTYNALINAFVK 337



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 132/271 (48%), Gaps = 12/271 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI  +C  +++  A    G++ + G+ P+VVT+  LL+G+C           E  + 
Sbjct: 117 FNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLC----------VEDRVS 166

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A   F +M      P+V +F+ +++   R  +   ++  L+ M E G+ PT  TY ++V
Sbjct: 167 EALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIV 226

Query: 122 KCLCSCGRIEDAEELLGEMVR-NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             +C  G    A  LL +M   + + P+   Y+            + A  L+ +M+E G+
Sbjct: 227 DGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI 286

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +YN +I  F +  R     ++  ++    + PD+ +Y  LI+   ++ K+ EA 
Sbjct: 287 -FPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAA 345

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           + + EM+ +G++P  +T+ ++  G  + D L
Sbjct: 346 ELYDEMLPRGIIPNTITYNSMIDGFCKQDRL 376



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 126/309 (40%), Gaps = 55/309 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G+CK +R+D AE     M  +G  P+V T+  L++G C            K I 
Sbjct: 363 YNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCG----------AKRID 412

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++  EM  RG+  +  +++ ++H +        +LD    M   G+CP + T ++++
Sbjct: 413 DGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLL 472

Query: 122 KCLCSCGRIEDAEELLGEMVR-----------NGVCPSAETYNCFFKEYRGRKDANGAMK 170
             LC  G+++DA E+   M +           NGV P   TYN              A +
Sbjct: 473 DGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEE 532

Query: 171 LYRQMKE--------------DGLC--------------------VPNMHSYNILIGMFM 196
           LY +M                DGLC                     PN+ ++N LI  + 
Sbjct: 533 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYC 592

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
              R+D   E++ ++   G+  D   Y  LI+G  +      A   F EMI  G+ P  +
Sbjct: 593 KAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTI 652

Query: 257 TFETLYRGL 265
           T   +  G 
Sbjct: 653 TIRNMLTGF 661



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 97/228 (42%), Gaps = 36/228 (15%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           K + +A  +F +M      P V  F  ++ V  R  +P L +     M+ K I   + ++
Sbjct: 58  KGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSF 117

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + ++KC CSC ++  A    G++ + G+ P   T+                         
Sbjct: 118 NILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLH-------------------- 157

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            GLCV                +R+    + ++ +  +   P++ ++T L++GLC + +  
Sbjct: 158 -GLCVE---------------DRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           EA      M+E GL P ++T+ T+  G+ +     +   L +K++E S
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVS 249



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 10/139 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I G CK +R+D A +    M  +   PNVVT+N L+NG C+             + 
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGR----------VD 598

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++F EM  RGI  D   +  +++ + +      +LD    M   G+ P   T  +++
Sbjct: 599 DGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658

Query: 122 KCLCSCGRIEDAEELLGEM 140
               S   +E A  +L ++
Sbjct: 659 TGFWSKEELERAVAMLEDL 677


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 150/310 (48%), Gaps = 27/310 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G+C   R   A+R L EM+ER + PNVVTYN L+N   +         FE    
Sbjct: 291 YNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKF-----FE---- 341

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +++DEM  RGI P+  +++ ++  + +  +   + D    M  KG  P V T+++++
Sbjct: 342 -AAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLI 400

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI+D  ELL EM R G+  +  TYN     +    D N A+ L +QM   G+C
Sbjct: 401 DGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVC 460

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGS-----------GLGPDLDSYTMLIHGL 230
            P++ + N L+       ++    E++  ++ S           G+ PD+ +Y +LI GL
Sbjct: 461 -PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGL 519

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEES 285
             + K+ EA + + EM  +G++P  +T+ ++  GL +   L    ++      K      
Sbjct: 520 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNV 579

Query: 286 ITFGSEFQNY 295
           +TF +    Y
Sbjct: 580 VTFNTLINGY 589



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 126/309 (40%), Gaps = 55/309 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G+CK +R+D AE     M  +G  P+V T+  L++G C            K I 
Sbjct: 361 YNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCG----------AKRID 410

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++  EM  RG+  +  +++ ++H +        +LD    M   G+CP + T ++++
Sbjct: 411 DGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLL 470

Query: 122 KCLCSCGRIEDAEELLGEMVR-----------NGVCPSAETYNCFFKEYRGRKDANGAMK 170
             LC  G+++DA E+   M +           NGV P   TYN              A +
Sbjct: 471 DGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEE 530

Query: 171 LYRQMKE--------------DGLC--------------------VPNMHSYNILIGMFM 196
           LY +M                DGLC                     PN+ ++N LI  + 
Sbjct: 531 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYC 590

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
              R+D   E++ ++   G+  D   Y  LI+G  +      A   F EMI  G+ P  +
Sbjct: 591 KAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTI 650

Query: 257 TFETLYRGL 265
           T   +  G 
Sbjct: 651 TIRNMLTGF 659



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 133/306 (43%), Gaps = 51/306 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+    ++ R D+      +M  + +  ++ ++ +L+   C  + L           
Sbjct: 84  FNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLP---------- 133

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSV 120
            A   F ++   G+ PDV +F+ +LH     H+   +LD  +      IC P V T++++
Sbjct: 134 FALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFH-----QICRPDVLTFTTL 188

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE--- 177
           +  LC  GR+ +A  LL  MV NG+ P   TY  F        D   A+ L R+M+E   
Sbjct: 189 MNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISH 248

Query: 178 ------------DGLC--------------------VPNMHSYNILIGMFMALNRMDMVR 205
                       DGLC                     PN+ +YN +IG F    R    +
Sbjct: 249 IKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQ 308

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            +  ++    + P++ +Y  LI+   ++ K+ EA + + EM+ +G++P  +T+ ++  G 
Sbjct: 309 RLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGF 368

Query: 266 IQSDML 271
            + D L
Sbjct: 369 CKQDRL 374



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 120/248 (48%), Gaps = 6/248 (2%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G+C +  ++ A     +MI  GV P++VT N LL+G+C    L  +    K ++
Sbjct: 431 YNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 490

Query: 62  NAEKVFDEMR-VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            ++   D      G+EPDV +++I++       +   + +    M  +GI P   TYSS+
Sbjct: 491 KSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 550

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   R+++A ++   M      P+  T+N     Y      +  ++L+ +M   G+
Sbjct: 551 IDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGI 610

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            V +   Y  LI  F  +  ++   +I+ ++  SG+ PD  +   ++ G   K++ + A 
Sbjct: 611 -VADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERA- 668

Query: 241 QYFVEMIE 248
              V M+E
Sbjct: 669 ---VAMLE 673



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 116/268 (43%), Gaps = 45/268 (16%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           K + +A  +F +M      P V  F+ ++    R  +P L +     M+ K I   + ++
Sbjct: 60  KGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSF 119

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK----EYR-----------GR 162
           + ++KC CSC ++  A    G++ + G+ P   T+         ++R            R
Sbjct: 120 TILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICR 179

Query: 163 KDA-------NG---------AMKLYRQMKEDGLCVPNMHSYNILI-GM------FMALN 199
            D        NG         A+ L  +M E+GL  P+  +Y   + GM        ALN
Sbjct: 180 PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGL-QPDQITYGTFVDGMCKMGDTVSALN 238

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
            +  + EI      S + P++  Y+ +I GLC+  +  ++   F+EM +KG+ P  VT+ 
Sbjct: 239 LLRKMEEI------SHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYN 292

Query: 260 TLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            +  G   S      +RL +++ E  I+
Sbjct: 293 CMIGGFCISGRWSAAQRLLQEMLERKIS 320



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 10/175 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G     +   AE    EM  RG+ P+ +TY+ +++G+C+++ L           
Sbjct: 512 YNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLD---------- 561

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F  M  +   P+V +F+ +++ Y +A +    L+    M  +GI      Y +++
Sbjct: 562 EATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLI 621

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
                 G I  A ++  EM+ +GV P   T       +  +++   A+ +   ++
Sbjct: 622 YGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 676



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 10/141 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I G CK +R+D A +    M  +   PNVVT+N L+NG C+             + 
Sbjct: 547 YSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGR----------VD 596

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++F EM  RGI  D   +  +++ + +      +LD    M   G+ P   T  +++
Sbjct: 597 DGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 656

Query: 122 KCLCSCGRIEDAEELLGEMVR 142
               S   +E A  +L ++ R
Sbjct: 657 TGFWSKEELERAVAMLEDLQR 677


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 146/288 (50%), Gaps = 26/288 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC---------------R 46
           YTSLI G+C+ N ++ A +    M  +G   N V+Y  +++G+C               R
Sbjct: 252 YTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMR 311

Query: 47  RASLHPSERFEKTI--------RNAE--KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
               +P+ R    I        RN E   +F+EMR R  EP+V ++++++    +  +  
Sbjct: 312 EDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLD 371

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            S   LN M EKG+ P+V TY+++++  C  GRIE A E+LG M  N   P+  TYN   
Sbjct: 372 ESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELI 431

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +  RK  + AM L  +M E  L  P++ +YN LI +       D   ++ + +K +GL
Sbjct: 432 CGFSKRKHVHKAMTLLSKMLESKL-TPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGL 490

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            PD  +Y++ I  LC+ ++ +EAC  F  + EKG+   +V +  L  G
Sbjct: 491 VPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDG 538



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 119/260 (45%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+ K   +  A   L +M+E  + P++VTYN L++  C+               
Sbjct: 427 YNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFD---------- 476

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+ D ++  G+ PD  ++S+ +    ++ + + + D  N +KEKGI      Y++++
Sbjct: 477 SAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALI 536

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+I++A  LL  M      P++ TYN               + +   M + G+ 
Sbjct: 537 DGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGV- 595

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +Y ILI   +     D    ++N +   G  PD+ +YT  IH  C     KEA  
Sbjct: 596 KPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEG 655

Query: 242 YFVEMIEKGLLPQKVTFETL 261
               MIE G++P  +T+  L
Sbjct: 656 MMARMIEAGVMPDSLTYTLL 675



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 125/294 (42%), Gaps = 16/294 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+    +   ID  +R   EM+   + PN+ T N ++N   +  ++  +  +   I 
Sbjct: 182 YNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKIF 241

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A          G+ PD  +++ ++  Y R +    +    N M  KG      +Y++++
Sbjct: 242 QA----------GLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTII 291

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GRI++   L  +M  +   P+  TY        G       M L+ +M+E   C
Sbjct: 292 HGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERS-C 350

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+H+Y +++       ++D  R I N++   GL P + +Y  LI G CE+ + + A +
Sbjct: 351 EPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALE 410

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL-----IQSDMLRTWRRLKKKLDEESITFGS 290
               M      P + T+  L  G      +   M    + L+ KL    +T+ S
Sbjct: 411 ILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNS 464



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 11/192 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT+LI G CK  +ID A   L  M      PN  TYN L+ GVC+          E  +
Sbjct: 531 MYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCK----------EGKV 580

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           +    + + M   G++P V +++I++    R      +    N M   G  P V TY++ 
Sbjct: 581 QEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAF 640

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C+ G +++AE ++  M+  GV P + TY      Y     A  A  + ++M + G 
Sbjct: 641 IHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAG- 699

Query: 181 CVPNMHSYNILI 192
           C P+   +N LI
Sbjct: 700 CDPSHPIWNNLI 711



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 122/260 (46%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+  CK    D A + L  + E G+ P+  TY+V ++ +C+      S+R E+   
Sbjct: 462 YNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCK------SKRMEE--- 512

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F+ ++ +GI+ +   ++ ++  + +A +   ++  L  M  +   P  +TY+S++
Sbjct: 513 -ACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLI 571

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G++++   ++  M + GV P+  TY    +E     D + A +++ QM   G  
Sbjct: 572 YGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFG-H 630

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++++Y   I  +     +     +   +  +G+ PD  +YT+LI          +A  
Sbjct: 631 KPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFN 690

Query: 242 YFVEMIEKGLLPQKVTFETL 261
               M++ G  P    +  L
Sbjct: 691 VLKRMLDAGCDPSHPIWNNL 710


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 135/268 (50%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ G+CK  ++   +     M+++G++PNVVTY  L++G C            K + 
Sbjct: 270 FNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYC----------LVKEVN 319

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +   M  RG+ PD+ S++I++  + +  +   +++    M  K I P V TY+S++
Sbjct: 320 KAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLI 379

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+I  A +L+ EM   GV P   TY+            + A+ L  ++K+ G+ 
Sbjct: 380 DGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGI- 438

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PNM++Y ILI       R++    I+ D+   G    +++YT++IHG C K  + EA  
Sbjct: 439 RPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALA 498

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              +M +   +P  VT+E + R L   D
Sbjct: 499 LLSKMKDNSCIPDAVTYEIIIRSLFDKD 526



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 146/285 (51%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G CK+     A   L  +    V+PNVV Y+ +++G+C+          +K + 
Sbjct: 165 YGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCK----------DKHVN 214

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  ++ EM  +GI P+V ++S ++  +    Q + ++D  N M  + I P V T++ +V
Sbjct: 215 DAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILV 274

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++++ + +   M++ G+ P+  TY      Y   K+ N A  +   M + G+ 
Sbjct: 275 DGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVN 334

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SYNILI  F  + ++D    ++ ++    + PD+ +Y  LI GLC+  K   A +
Sbjct: 335 -PDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALK 393

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM ++G+ P  +T+ ++   L ++  +     L  KL ++ I
Sbjct: 394 LVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGI 438



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 142/281 (50%), Gaps = 11/281 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY+++I G CK   ++ A     EM+ +G+ PNVVTY+ L++G      L          
Sbjct: 199 MYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQL---------- 248

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           ++A  +F++M +  I+PDV +F+I++  + +  + +        M ++GI P V TY S+
Sbjct: 249 KDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSL 308

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C    +  A+ +L  M + GV P  ++YN     +   K  + AM L+++M    +
Sbjct: 309 MDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHI 368

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +P++ +YN LI     L ++    ++ +++   G+ PD+ +Y+ ++  LC+  +  +A 
Sbjct: 369 -IPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAI 427

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
               ++ ++G+ P   T+  L  GL +   L     + + L
Sbjct: 428 ALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDL 468



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 113/271 (41%), Gaps = 44/271 (16%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G  PN +T+  L+ G+C +  +H +  F           D +   G + D   +  ++H 
Sbjct: 122 GYHPNTITFTTLIKGLCLKGQIHQALLFH----------DNVVAMGFQLDQVGYGTLIHG 171

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
             +  + + +LD L  +    + P V  YS+++  +C    + DA +L  EMV  G+ P+
Sbjct: 172 LCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPN 231

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQM--------------KEDGLC------------- 181
             TY+     +        A+ L+ +M                DG C             
Sbjct: 232 VVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFA 291

Query: 182 -------VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
                   PN+ +Y  L+  +  +  ++  + I   +   G+ PD+ SY +LI G C+ +
Sbjct: 292 MMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIK 351

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           K  EA   F EM  K ++P  VT+ +L  GL
Sbjct: 352 KVDEAMNLFKEMHHKHIIPDVVTYNSLIDGL 382



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 96/214 (44%), Gaps = 46/214 (21%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CKI ++D A     EM  + + P+VVTYN L++G+C+             I 
Sbjct: 340 YNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGK----------IS 389

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ DEM  RG+ PD+ ++S +L    + HQ   ++  L  +K++GI P + TY+ ++
Sbjct: 390 YALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILI 449

Query: 122 KCLCSCGRIEDAEE-----------------------------------LLGEMVRNGVC 146
             LC  GR+EDA                                     LL +M  N   
Sbjct: 450 DGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCI 509

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           P A TY    +    + + + A KL R+M   GL
Sbjct: 510 PDAVTYEIIIRSLFDKDENDKAEKL-REMITRGL 542


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 140/298 (46%), Gaps = 35/298 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           Y  +I G+C   R   A+R L EM ER + P+VVT++VL+N + +      +E       
Sbjct: 286 YNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEML 345

Query: 56  -----------------FEKTIR--NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                            F K  R   AE++F  M  +G  PDV +FSI++  Y  A +  
Sbjct: 346 PRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVD 405

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
             +  L+ M  +G+     TY++++   C  G +  A +LL EM+ +GVCP+  T N   
Sbjct: 406 DGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLL 465

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCV----------PNMHSYNILIGMFMALNRMDMVRE 206
                      A+++++ M++  + +          P++ +YNILI   +   +     E
Sbjct: 466 DGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEE 525

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           ++ ++   GL PD  +Y  +I GLC++ +  EA Q F  M  KG  P  VTF TL  G
Sbjct: 526 LYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLING 583



 Score =  137 bits (344), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 140/277 (50%), Gaps = 22/277 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G+ K NR+D AER    M  +G  P+V+T+++L++G C            K + 
Sbjct: 356 YNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCG----------AKRVD 405

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  K+  EM  RG+  +  +++ ++H + +      +LD L  M   G+CP V T ++++
Sbjct: 406 DGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLL 465

Query: 122 KCLCSCGRIEDAEELLGEMVR-----------NGVCPSAETYNCFFKEYRGRKDANGAMK 170
             LC+ G+++DA E+   M +           N V P  +TYN            + A +
Sbjct: 466 DGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEE 525

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           LY +M   GL VP+  +YN +I      +R+D   ++++ +   G  PD+ ++T LI+G 
Sbjct: 526 LYEEMPHRGL-VPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGY 584

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           C+  +  +  + F EM  +G++   +T+ TL  G  Q
Sbjct: 585 CKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQ 621



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 158/315 (50%), Gaps = 32/315 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR----ASLHPSERFE 57
           +T+L+ G C+  R+  A   L  M+E G++PN +TY  +++G+C+     ++L+   + E
Sbjct: 180 FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKME 239

Query: 58  KTIR----------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           +  R                      +A+ +F EM+ +GI P++ +++ +++ +  + + 
Sbjct: 240 EVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRW 299

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +   L  M E+ + P V T+S ++  L   G+  +AEEL  EM+  G+ P+  TYN  
Sbjct: 300 SEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSM 359

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +  +   + A +++  M   G C P++ +++ILI  +    R+D   ++ +++   G
Sbjct: 360 IDGFSKQNRLDAAERMFYLMATKG-CSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRG 418

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS----DML 271
           L  +  +YT LIHG C+      A     EMI  G+ P  VT  TL  GL  +    D L
Sbjct: 419 LVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDAL 478

Query: 272 RTWRRLKK-KLDEES 285
             ++ ++K K+D ++
Sbjct: 479 EMFKVMQKSKMDLDA 493



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 159/341 (46%), Gaps = 52/341 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER----- 55
           +Y+++I G  K  R   A+    EM E+G+ PN+ TYN ++NG C       ++R     
Sbjct: 250 IYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREM 309

Query: 56  FEKTIR--------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           FE+ +                      AE++++EM  RGI P+  +++ ++  +S+ ++ 
Sbjct: 310 FERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRL 369

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +      M  KG  P V T+S ++   C   R++D  +LL EM R G+  +  TY   
Sbjct: 370 DAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTL 429

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG-------------MF--MALNR 200
              +    + N A+ L ++M   G+C PN+ + N L+              MF  M  ++
Sbjct: 430 IHGFCQLGNLNAALDLLQEMISSGVC-PNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSK 488

Query: 201 MDM-VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           MD+     +NDV+     PD+ +Y +LI GL  + K+ EA + + EM  +GL+P  +T+ 
Sbjct: 489 MDLDASHPFNDVE-----PDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYN 543

Query: 260 TLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           ++  GL +   L    ++      K    + +TF +    Y
Sbjct: 544 SVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGY 584



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 119/241 (49%), Gaps = 2/241 (0%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI+G+C++  ++ A   L EMI  GV PNVVT N LL+G+C    L  +    K ++
Sbjct: 426 YTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQ 485

Query: 62  NAEKVFDEMR-VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            ++   D       +EPDV +++I++       +   + +    M  +G+ P   TY+SV
Sbjct: 486 KSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSV 545

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   R+++A ++   M   G  P   T+      Y         ++++ +M   G+
Sbjct: 546 IDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGI 605

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            V N  +Y  LI  F  +  ++   +I+ ++  SG+ PD  +   ++ GL  K++ K A 
Sbjct: 606 -VANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAV 664

Query: 241 Q 241
           Q
Sbjct: 665 Q 665



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 143/300 (47%), Gaps = 21/300 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI  +C  +++  A    G++ + G  P++VT++ LL+G+C           E  + 
Sbjct: 114 FTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLC----------VEDRVS 163

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A   F ++     +P+V +F+ +++   R  +   ++  L+ M E G+ P   TY ++V
Sbjct: 164 EALHFFHQI----CKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIV 219

Query: 122 KCLCSCGRIEDAEELLGEMVR-NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             +C  G    A  LL +M   + + P+   Y+              A  L+ +M+E G+
Sbjct: 220 DGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGI 279

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+ +YN +I  F +  R    + +  ++    + PD+ ++++LI+ L ++ K+ EA 
Sbjct: 280 S-PNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAE 338

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           + + EM+ +G++P  +T+ ++  G  + + L    R+      K    + ITF      Y
Sbjct: 339 ELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGY 398



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 120/261 (45%), Gaps = 22/261 (8%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           ++ R D+      +M  R +  N+ ++ +L+   C  + L            A   F ++
Sbjct: 88  RMERPDVVISLHRKMEMRRIPCNIYSFTILIKCFCSCSKLP----------FALSTFGKI 137

Query: 71  RVRGIEPDVTSFSIVLH---VYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSVVKCLCS 126
              G  P + +FS +LH   V  R  +       L+F  +  IC P V  +++++  LC 
Sbjct: 138 TKLGFHPSLVTFSTLLHGLCVEDRVSE------ALHFFHQ--ICKPNVIAFTTLMNGLCR 189

Query: 127 CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH 186
            GR+ +A  LL  MV +G+ P+  TY           D   A+ L R+M+E     PN+ 
Sbjct: 190 EGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVV 249

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
            Y+ +I       R    + ++++++  G+ P+L +Y  +I+G C   +W EA +   EM
Sbjct: 250 IYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREM 309

Query: 247 IEKGLLPQKVTFETLYRGLIQ 267
            E+ + P  VTF  L   L++
Sbjct: 310 FERKMSPDVVTFSVLINALVK 330


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 150/310 (48%), Gaps = 27/310 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G+C   R   A+R L EM+ER + PNVVTYN L+N   +         FE    
Sbjct: 291 YNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKF-----FE---- 341

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +++DEM  RGI P+  +++ ++  + +  +   + D    M  KG  P V T+++++
Sbjct: 342 -AAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLI 400

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI+D  ELL EM R G+  +  TYN     +    D N A+ L +QM   G+C
Sbjct: 401 DGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVC 460

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGS-----------GLGPDLDSYTMLIHGL 230
            P++ + N L+       ++    E++  ++ S           G+ PD+ +Y +LI GL
Sbjct: 461 -PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGL 519

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEES 285
             + K+ EA + + EM  +G++P  +T+ ++  GL +   L    ++      K      
Sbjct: 520 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNV 579

Query: 286 ITFGSEFQNY 295
           +TF +    Y
Sbjct: 580 VTFNTLINGY 589



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 126/309 (40%), Gaps = 55/309 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G+CK +R+D AE     M  +G  P+V T+  L++G C            K I 
Sbjct: 361 YNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCG----------AKRID 410

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++  EM  RG+  +  +++ ++H +        +LD    M   G+CP + T ++++
Sbjct: 411 DGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLL 470

Query: 122 KCLCSCGRIEDAEELLGEMVR-----------NGVCPSAETYNCFFKEYRGRKDANGAMK 170
             LC  G+++DA E+   M +           NGV P   TYN              A +
Sbjct: 471 DGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEE 530

Query: 171 LYRQMKE--------------DGLC--------------------VPNMHSYNILIGMFM 196
           LY +M                DGLC                     PN+ ++N LI  + 
Sbjct: 531 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYC 590

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
              R+D   E++ ++   G+  D   Y  LI+G  +      A   F EMI  G+ P  +
Sbjct: 591 KAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTI 650

Query: 257 TFETLYRGL 265
           T   +  G 
Sbjct: 651 TIRNMLTGF 659



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 133/306 (43%), Gaps = 51/306 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+    ++ R D+      +M  + +  ++ ++ +L+   C  + L           
Sbjct: 84  FNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLP---------- 133

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSV 120
            A   F ++   G+ PDV +F+ +LH     H+   +LD  +      IC P V T++++
Sbjct: 134 FALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFH-----QICRPDVLTFTTL 188

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE--- 177
           +  LC  GR+ +A  LL  MV NG+ P   TY  F        D   A+ L R+M+E   
Sbjct: 189 MNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISH 248

Query: 178 ------------DGLC--------------------VPNMHSYNILIGMFMALNRMDMVR 205
                       DGLC                     PN+ +YN +IG F    R    +
Sbjct: 249 IKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQ 308

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            +  ++    + P++ +Y  LI+   ++ K+ EA + + EM+ +G++P  +T+ ++  G 
Sbjct: 309 RLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGF 368

Query: 266 IQSDML 271
            + D L
Sbjct: 369 CKQDRL 374



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 116/268 (43%), Gaps = 45/268 (16%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           K + +A  +F +M      P V  F+ ++    R  +P L +     M+ K I   + ++
Sbjct: 60  KGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSF 119

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK----EYR-----------GR 162
           + ++KC CSC ++  A    G++ + G+ P   T+         ++R            R
Sbjct: 120 TILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICR 179

Query: 163 KDA-------NG---------AMKLYRQMKEDGLCVPNMHSYNILI-GM------FMALN 199
            D        NG         A+ L  +M E+GL  P+  +Y   + GM        ALN
Sbjct: 180 PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGL-QPDQITYGTFVDGMCKMGDTVSALN 238

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
            +  + EI      S + P++  Y+ +I GLC+  +  ++   F+EM +KG+ P  VT+ 
Sbjct: 239 LLRKMEEI------SHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYN 292

Query: 260 TLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            +  G   S      +RL +++ E  I+
Sbjct: 293 CMIGGFCISGRWSAAQRLLQEMLERKIS 320



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 10/139 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I G CK +R+D A +    M  +   PNVVT+N L+NG C+             + 
Sbjct: 547 YSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGR----------VD 596

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++F EM  RGI  D   +  +++ + +      +LD    M   G+ P   T  +++
Sbjct: 597 DGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 656

Query: 122 KCLCSCGRIEDAEELLGEM 140
               S   +E A  +L ++
Sbjct: 657 TGFWSKEELERAVAMLEDL 675


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 144/285 (50%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+   CK +    A + L EM ++G  P++VTYNV++NG+C+   +  +  F K + 
Sbjct: 196 YTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLP 255

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +           G EP+  S++IVL     A + + + + +  M +KG  P V T++ ++
Sbjct: 256 S----------YGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLI 305

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +E A E+L ++ + G  P++ +YN     +  +K  + AM     M   G C
Sbjct: 306 SFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG-C 364

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SYN L+        +D+  E+ + +K  G  P L SY  +I GL +  K KEA +
Sbjct: 365 YPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALE 424

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM+ KGL P  +T+ T+  GL + D +    R   K+ +  I
Sbjct: 425 LLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGI 469



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 132/267 (49%), Gaps = 14/267 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G+C   ++D A R + EM    VEP+  TYN L+ G+C R              
Sbjct: 129 YNAMVAGYCGAGQLDAARRLVAEM---PVEPDAYTYNTLIRGLCGRGRTA---------- 175

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA  V DEM  R   PDV +++I+L    +    + ++  L+ M++KG  P + TY+ VV
Sbjct: 176 NALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVV 235

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  GR++DA E L  +   G  P+  +YN   K     +    A +L  +M + G C
Sbjct: 236 NGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKG-C 294

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ ++N+LI        ++   E+   +   G  P+  SY  L+H  C+++K  +A  
Sbjct: 295 PPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMA 354

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
           +   M+ +G  P  V++ TL   L +S
Sbjct: 355 FLDLMVSRGCYPDIVSYNTLLTALCRS 381



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 134/266 (50%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++ G C+  R+D A  FL  +   G EPN V+YN++L G+C       +ER+E    
Sbjct: 231 YNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCT------AERWE---- 280

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE++  EM  +G  P+V +F++++    R    + +L+ L  + + G  P   +Y+ ++
Sbjct: 281 DAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLL 340

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   +++ A   L  MV  G  P   +YN          + + A++L  Q+K+ G C
Sbjct: 341 HAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKG-C 399

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + SYN +I       +     E+ N++   GL PD+ +Y+ +  GLC + + ++A +
Sbjct: 400 APVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIR 459

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
            F ++ + G+ P  V +  +  GL +
Sbjct: 460 AFGKVQDMGIRPNTVLYNAIILGLCK 485



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 133/276 (48%), Gaps = 26/276 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  ++ G C   R + AE  +GEM ++G  PNVVT+N+L++ +CR+  + P+        
Sbjct: 266 YNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIP 325

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +K +  A    D M  RG  PD+ S++ +L    R+ +  
Sbjct: 326 KYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 385

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           ++++ L+ +K+KG  P + +Y++V+  L   G+ ++A ELL EMV  G+ P   TY+   
Sbjct: 386 VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIA 445

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      A++ + ++++ G+  PN   YN +I             +++  + G+G 
Sbjct: 446 AGLCREDRIEDAIRAFGKVQDMGI-RPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGC 504

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
            P+  +YT+LI GL  +   KEA     E+  +G++
Sbjct: 505 MPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVV 540



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 105/223 (47%), Gaps = 7/223 (3%)

Query: 41  LNGVCRRASLHPSERFEKTIRNAEKVFDEMRV-RGIEPDVTSFSIVLHVYSRAHQPQLSL 99
           L G  RR          K +  + +  +  RV     PDV +++ ++  Y  A Q    L
Sbjct: 87  LVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQ----L 142

Query: 100 DKLN-FMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158
           D     + E  + P   TY+++++ LC  GR  +A  +L EM+R    P   TY    + 
Sbjct: 143 DAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEA 202

Query: 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218
              R     AMKL  +M++ G C P++ +YN+++       R+D   E   ++   G  P
Sbjct: 203 TCKRSGYKQAMKLLDEMRDKG-CTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEP 261

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +  SY +++ GLC  ++W++A +   EM +KG  P  VTF  L
Sbjct: 262 NTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNML 304



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 80/158 (50%), Gaps = 4/158 (2%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P V  Y+++V   C  G+++ A  L+ EM    V P A TYN   +   GR     A+ +
Sbjct: 124 PDVMAYNAMVAGYCGAGQLDAARRLVAEM---PVEPDAYTYNTLIRGLCGRGRTANALAV 180

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
             +M     CVP++ +Y IL+      +      ++ ++++  G  PD+ +Y ++++G+C
Sbjct: 181 LDEMLRR-RCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGIC 239

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           ++ +  +A ++   +   G  P  V++  + +GL  ++
Sbjct: 240 QEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAE 277



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 16/156 (10%)

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
           G +++A  L+G   R    P A T     K+      A+G     R++     C P++ +
Sbjct: 79  GELDEALRLVGSARR----PDAGTCAALIKKL----SASGRTAEARRVL--AACGPDVMA 128

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           YN ++  +    ++D  R +  ++    + PD  +Y  LI GLC + +   A     EM+
Sbjct: 129 YNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDEML 185

Query: 248 EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            +  +P  VT+  L     +      +++  K LDE
Sbjct: 186 RRRCVPDVVTYTILLEATCKRS---GYKQAMKLLDE 218



 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 10/75 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I G CK      A      MI  G  PN  TY +L+ G+           +E  I
Sbjct: 475 LYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLA----------YEGLI 524

Query: 61  RNAEKVFDEMRVRGI 75
           + A  + DE+  RG+
Sbjct: 525 KEARDLLDELCSRGV 539


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 146/305 (47%), Gaps = 32/305 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           +T+LI G C   +I  A     +MI  G +PNVVTY  L+NG+C+  +   + R      
Sbjct: 143 FTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSME 202

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               ++ +  A  +F EM  +GI P++ +++ ++H   +  + +
Sbjct: 203 QGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWK 262

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
                +N M +  I P V T ++VV  LC  G + +A +++  M+  GV P+  TYN   
Sbjct: 263 HVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALM 322

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +  R + + A+K++  M     CV N+ SYN LI  +  +  +D    ++ ++    L
Sbjct: 323 DGHCLRNEVDVAVKVFDTMVHKD-CVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQEL 381

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  +Y  LIHGLC   + ++A   F EM+ +G +P  VT+ TL      SD L   R 
Sbjct: 382 TPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTL------SDYLCKNRH 435

Query: 277 LKKKL 281
           L K +
Sbjct: 436 LDKAM 440



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 137/279 (49%), Gaps = 12/279 (4%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +++   CK   +  A   +  MI RGVEPNVVTYN L++G C R            +  A
Sbjct: 285 TVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLR----------NEVDVA 334

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            KVFD M  +    +V S++ +++ Y +      ++     M  + + P   TY++++  
Sbjct: 335 VKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHG 394

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC  GR++DA  L  EMV  G  P   TY          +  + AM L + + E     P
Sbjct: 395 LCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAI-EGSNWDP 453

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++  Y  ++        ++  R++++++   GL P++ +Y ++IHGLC++    EA + F
Sbjct: 454 DIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLF 513

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSD-MLRTWRRLKKKL 281
            EM + G  P   T+  + RG ++++  LRT   L++ L
Sbjct: 514 SEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEML 552



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 129/283 (45%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+G CK+         + EM++  + P+V T N +++ +C+          E  + 
Sbjct: 248 YNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCK----------EGMVA 297

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V D M  RG+EP+V +++ ++  +   ++  +++   + M  K     V +Y++++
Sbjct: 298 EAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLI 357

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    ++ A  L  EM R  + P+  TYN              A+ L+ +M   G  
Sbjct: 358 NGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQ- 416

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y  L         +D    +   ++GS   PD+  YT ++ G+C   + ++A  
Sbjct: 417 IPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARD 476

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KGL P   T+  +  GL +  +L    +L  ++++ 
Sbjct: 477 LFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKN 519



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 120/259 (46%), Gaps = 11/259 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N +D A      M+ +   P+ V +N LL  + +        +   T+ +  +  D    
Sbjct: 49  NTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAK-------TKHHSTLLSLSRQMDSF-- 99

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
            GI PDV + +IV++     ++   +   L  + + G  P   T++++++ LC  G+I +
Sbjct: 100 -GIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGE 158

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A  L  +M+  G  P+  TY           + + A++L R M E G C PN+  ++ LI
Sbjct: 159 ALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSM-EQGNCQPNVVVFSTLI 217

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                  ++     I++++   G+ P++ +Y  LIHGLC+  +WK       EM++  ++
Sbjct: 218 DSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIM 277

Query: 253 PQKVTFETLYRGLIQSDML 271
           P   T  T+   L +  M+
Sbjct: 278 PDVFTLNTVVDALCKEGMV 296



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 11/194 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G C + R+  A     EM+ RG  P++VTY  L + +C+   L  +    K I 
Sbjct: 388 YNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIE 447

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            +            +PD+  ++ +L    RA + + + D  + +  KG+ P V TY+ ++
Sbjct: 448 GSNW----------DPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMI 497

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G + +A +L  EM +NG  P+  TYN   + +    +A   ++L  +M   G  
Sbjct: 498 HGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFS 557

Query: 182 VPNMHSYNILIGMF 195
           V ++ +  +L+GM 
Sbjct: 558 V-DVSTTTLLVGML 570



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 8/237 (3%)

Query: 49  SLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA--HQPQLSLDKLNFMK 106
           + H       T+  A   F+ M  +   P    F+ +L   ++   H   LSL +   M 
Sbjct: 40  TFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQ--MD 97

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
             GI P V T + V+  LC   R++ A   L ++++ G  P A T+    +         
Sbjct: 98  SFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIG 157

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            A+ L+ +M  +G   PN+ +Y  LI     +        +   ++     P++  ++ L
Sbjct: 158 EALHLFDKMIGEGF-QPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTL 216

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           I  LC+ ++  EA   F EMI KG+ P  VT+ +L  GL +   L  W+ +   ++E
Sbjct: 217 IDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCK---LCEWKHVTTLMNE 270



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 74/142 (52%), Gaps = 10/142 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+++ G C+   ++ A      +  +G++PNV TYN++++G+C++  L          
Sbjct: 457 IYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLL---------- 506

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+F EM   G  P+  +++++   + R ++   +++ L  M  +G    V+T + +
Sbjct: 507 AEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLL 566

Query: 121 VKCLCSCGRIEDAEELLGEMVR 142
           V  L   G  +  +++L + V+
Sbjct: 567 VGMLSDDGLDQSVKQILCKYVQ 588


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 146/305 (47%), Gaps = 32/305 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           +T+LI G C   +I  A     +MI  G +PNVVTY  L+NG+C+  +   + R      
Sbjct: 143 FTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSME 202

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               ++ +  A  +F EM  +GI P++ +++ ++H   +  + +
Sbjct: 203 QGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWK 262

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
                +N M +  I P V T ++VV  LC  G + +A +++  M+  GV P+  TYN   
Sbjct: 263 HVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALM 322

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +  R + + A+K++  M     CV N+ SYN LI  +  +  +D    ++ ++    L
Sbjct: 323 DGHCLRNEVDVAVKVFDTMVHKD-CVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQEL 381

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  +Y  LIHGLC   + ++A   F EM+ +G +P  VT+ TL      SD L   R 
Sbjct: 382 TPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTL------SDYLCKNRH 435

Query: 277 LKKKL 281
           L K +
Sbjct: 436 LDKAM 440



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 137/279 (49%), Gaps = 12/279 (4%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +++   CK   +  A   +  MI RGVEPNVVTYN L++G C R            +  A
Sbjct: 285 TVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLR----------NEVDVA 334

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            KVFD M  +    +V S++ +++ Y +      ++     M  + + P   TY++++  
Sbjct: 335 VKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHG 394

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC  GR++DA  L  EMV  G  P   TY          +  + AM L + + E     P
Sbjct: 395 LCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAI-EGSNWDP 453

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++  Y  ++        ++  R++++++   GL P++ +Y ++IHGLC++    EA + F
Sbjct: 454 DIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLF 513

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSD-MLRTWRRLKKKL 281
            EM + G  P   T+  + RG ++++  LRT   L++ L
Sbjct: 514 SEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEML 552



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 129/282 (45%), Gaps = 11/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+G CK+         + EM++  + P+V T N +++ +C+          E  + 
Sbjct: 248 YNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCK----------EGMVA 297

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V D M  RG+EP+V +++ ++  +   ++  +++   + M  K     V +Y++++
Sbjct: 298 EAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLI 357

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    ++ A  L  EM R  + P+  TYN              A+ L+ +M   G  
Sbjct: 358 NGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQ- 416

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y  L         +D    +   ++GS   PD+  YT ++ G+C   + ++A  
Sbjct: 417 IPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARD 476

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            F  +  KGL P   T+  +  GL +  +L    +L  ++++
Sbjct: 477 LFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNK 518



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 120/259 (46%), Gaps = 11/259 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N +D A      M+ +   P+ V +N LL  + +        +   T+ +  +  D    
Sbjct: 49  NTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAK-------TKHHSTLLSLSRQMDSF-- 99

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
            GI PDV + +IV++     ++   +   L  + + G  P   T++++++ LC  G+I +
Sbjct: 100 -GIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGE 158

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A  L  +M+  G  P+  TY           + + A++L R M E G C PN+  ++ LI
Sbjct: 159 ALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSM-EQGNCQPNVVVFSTLI 217

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                  ++     I++++   G+ P++ +Y  LIHGLC+  +WK       EM++  ++
Sbjct: 218 DSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIM 277

Query: 253 PQKVTFETLYRGLIQSDML 271
           P   T  T+   L +  M+
Sbjct: 278 PDVFTLNTVVDALCKEGMV 296



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 11/194 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G C + R+  A     EM+ RG  P++VTY  L + +C+   L  +    K I 
Sbjct: 388 YNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIE 447

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            +            +PD+  ++ +L    RA + + + D  + +  KG+ P V TY+ ++
Sbjct: 448 GS----------NWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMI 497

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G + +A +L  EM +NG  P+  TYN   + +    +A   ++L  +M   G  
Sbjct: 498 HGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFS 557

Query: 182 VPNMHSYNILIGMF 195
           V ++ +  +L+GM 
Sbjct: 558 V-DVSTTTLLVGML 570



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 8/237 (3%)

Query: 49  SLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA--HQPQLSLDKLNFMK 106
           + H       T+  A   F+ M  +   P    F+ +L   ++   H   LSL +   M 
Sbjct: 40  TFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQ--MD 97

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
             GI P V T + V+  LC   R++ A   L ++++ G  P A T+    +         
Sbjct: 98  SFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIG 157

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            A+ L+ +M  +G   PN+ +Y  LI     +        +   ++     P++  ++ L
Sbjct: 158 EALHLFDKMIGEGF-QPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTL 216

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           I  LC+ ++  EA   F EMI KG+ P  VT+ +L  GL +   L  W+ +   ++E
Sbjct: 217 IDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCK---LCEWKHVTTLMNE 270



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 74/141 (52%), Gaps = 10/141 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+++ G C+   ++ A      +  +G++PNV TYN++++G+C++  L          
Sbjct: 457 IYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLL---------- 506

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+F EM   G  P+  +++++   + R ++   +++ L  M  +G    V+T + +
Sbjct: 507 AEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLL 566

Query: 121 VKCLCSCGRIEDAEELLGEMV 141
           V  L   G  +  +++L ++V
Sbjct: 567 VGMLSDDGLDQSVKQILCKIV 587


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 144/285 (50%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+   CK +    A + L EM ++G  P++VTYNV++NG+C+   +  +  F K + 
Sbjct: 198 YTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLP 257

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +           G EP+  S++IVL     A + + + + +  M +KG  P V T++ ++
Sbjct: 258 S----------YGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLI 307

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +E A E+L ++ + G  P++ +YN     +  +K  + AM     M   G C
Sbjct: 308 SFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG-C 366

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SYN L+        +D+  E+ + +K  G  P L SY  +I GL +  K KEA +
Sbjct: 367 YPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALE 426

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM+ KGL P  +T+ T+  GL + D +    R   K+ +  I
Sbjct: 427 LLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGI 471



 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 134/266 (50%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++ G C+  R+D A  FL  +   G EPN V+YN++L G+C       +ER+E    
Sbjct: 233 YNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCT------AERWE---- 282

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE++  EM  +G  P+V +F++++    R    + +L+ L  + + G  P   +Y+ ++
Sbjct: 283 DAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLL 342

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   +++ A   L  MV  G  P   +YN          + + A++L  Q+K+ G C
Sbjct: 343 HAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKG-C 401

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + SYN +I       +     E+ N++   GL PD+ +Y+ +  GLC + + ++A +
Sbjct: 402 APVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIR 461

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
            F ++ + G+ P  V +  +  GL +
Sbjct: 462 AFGKVQDMGIRPNTVLYNAIILGLCK 487



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 131/274 (47%), Gaps = 26/274 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  ++ G C   R + AE  +GEM ++G  PNVVT+N+L++ +CR+  + P+        
Sbjct: 268 YNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIP 327

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +K +  A    D M  RG  PD+ S++ +L    R+ +  
Sbjct: 328 KYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 387

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           ++++ L+ +K+KG  P + +Y++V+  L   G+ ++A ELL EMV  G+ P   TY+   
Sbjct: 388 VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIA 447

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      A++ + ++++ G+  PN   YN +I             +++  + G+G 
Sbjct: 448 AGLCREDRIEDAIRAFGKVQDMGI-RPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGC 506

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
            P+  +YT+LI GL  +   KEA     E+  +G
Sbjct: 507 MPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 540



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 10/236 (4%)

Query: 41  LNGVCRRASLHPSERFEKTIRNAEKVFDEMRV-RGIEPDVTSFSIVLHVYSRAHQPQLSL 99
           L G  RR          K +  + +  +  RV     PDV +++ ++  Y  A Q   + 
Sbjct: 89  LVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMMAGYCGAGQVDAAR 148

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
               +  E+ +     T  ++++ LC  GR  +A  +L EM+R    P   TY    +  
Sbjct: 149 ---RWCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEAT 205

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
             R     AMKL  +M++ G C P++ +YN+++       R+D   E   ++   G  P+
Sbjct: 206 CKRSGYKQAMKLLDEMRDKG-CTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPN 264

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY-----RGLIQSDM 270
             SY +++ GLC  ++W++A +   EM +KG  P  VTF  L      +GL++  +
Sbjct: 265 TVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPAL 320



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 101/260 (38%), Gaps = 49/260 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G+C   ++D A R+  E   R VE +  T + L+ G+C R              
Sbjct: 131 YNAMMAGYCGAGQVDAARRWCAE---RAVERDAYTCDTLIRGLCGRGR----------TA 177

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA  V DEM  R   PDV                                    TY+ ++
Sbjct: 178 NALAVLDEMLRRRCVPDVV-----------------------------------TYTILL 202

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C     + A +LL EM   G  P   TYN            + A++  + +   G C
Sbjct: 203 EATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYG-C 261

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  SYNI++       R +   E+  ++   G  P++ ++ MLI  LC K   + A +
Sbjct: 262 EPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALE 321

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              ++ + G  P  +++  L
Sbjct: 322 VLEQIPKYGCSPNSLSYNPL 341



 Score = 38.1 bits (87), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 10/76 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I G CK      A      MI  G  PN  TY +L+ G+           +E  I
Sbjct: 477 LYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLA----------YEGLI 526

Query: 61  RNAEKVFDEMRVRGIE 76
           + A  + DE+  RG E
Sbjct: 527 KEARDLLDELCSRGEE 542


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 140/264 (53%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++   CK  ++D A   L  M+ +G+ PNVV+YN ++ G CR+ ++           
Sbjct: 432 YNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDM--------- 482

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  VF +M  R ++P+V ++SI++    +    + +LD  + M    I PT  T+++++
Sbjct: 483 -ASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTII 541

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++ +A + L   +  G  PS  TYN     +    + + A+ +YR+M E G+ 
Sbjct: 542 NGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVS 601

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  LI  F   NR+D+  +  ++++  GL  D+ +Y+ LI G C+++  + A  
Sbjct: 602 -PNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQD 660

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F E++E GL P ++ + ++  G 
Sbjct: 661 LFFELLEVGLSPNRIVYNSMISGF 684



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 147/321 (45%), Gaps = 46/321 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G C+   +DMA     +M+ R ++PNVVTY++L++G  ++     SE+      
Sbjct: 467 YNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGD---SEK------ 517

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +FD+M    I P   +F+ +++   +  Q   + DKL    E+G  P+  TY+S+V
Sbjct: 518 -ALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIV 576

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETY----NCFFKEYR----------------- 160
                 G I+ A  +  EM   GV P+  TY    N F K  R                 
Sbjct: 577 DGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLE 636

Query: 161 --------------GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
                          R+D   A  L+ ++ E GL  PN   YN +I  F  LN M+    
Sbjct: 637 LDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLS-PNRIVYNSMISGFRDLNNMEAALV 695

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
            +  +    +  DL +YT LI GL ++ +   A   ++EM+ KG++P  +TF  L  GL 
Sbjct: 696 WYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLC 755

Query: 267 QSDMLRTWRRLKKKLDEESIT 287
               L   R++ +++D +++T
Sbjct: 756 NKGQLENARKILEEMDRKNMT 776



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 139/271 (51%), Gaps = 11/271 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + ++I G CK+ ++  A   L   +E G  P+ +TYN +++G  +          E  I 
Sbjct: 537 FNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIK----------EGNID 586

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  V+ EM   G+ P+V +++ +++ + ++++  L+L   + M+EKG+   V  YS+++
Sbjct: 587 SALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALI 646

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    +E A++L  E++  G+ P+   YN     +R   +   A+  Y++M  D + 
Sbjct: 647 DGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIP 706

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++ +Y  LI   +   R+    +++ ++   G+ PD+ ++ +L++GLC K + + A +
Sbjct: 707 C-DLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARK 765

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
              EM  K + P  + + TL  G  +   L+
Sbjct: 766 ILEEMDRKNMTPSVLIYNTLIAGYFREGNLK 796



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 128/276 (46%), Gaps = 26/276 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------------ 48
           ++  L+  + + NRI+ A      MI + V P V   N+LL  + RR             
Sbjct: 152 VFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKM 211

Query: 49  ----------SLHPSERF---EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                     ++H   R    E  +  AE+ F E + RG++ D  ++SI++    +    
Sbjct: 212 VLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNS 271

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
            L L+ L  MKE+G  P+ AT++SV+    + G + +A  L  EM+  G   +       
Sbjct: 272 NLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSL 331

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            K Y  + + + A+ L+ ++ EDGL  PN  +Y++LI        ++   E++  +K +G
Sbjct: 332 MKGYCAQGNLDSALNLFNKITEDGL-FPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNG 390

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 251
           + P + +   L+ G  +   W+EA + F E ++ G+
Sbjct: 391 IPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGV 426



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 117/263 (44%), Gaps = 12/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I   CK    ++    L EM ERG  P+  T+  ++     + ++  + R ++ + 
Sbjct: 258 YSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMI 317

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N  K            ++   + ++  Y        +L+  N + E G+ P   TYS ++
Sbjct: 318 NCGKPM----------NLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLI 367

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C+ G IE A EL  +M  NG+ PS    N   + Y        A KL+ +  + G  
Sbjct: 368 EGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCG-- 425

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V N+ +YNI++       +MD    + +++   G+ P++ SY  +I G C K     A  
Sbjct: 426 VANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASS 485

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F +M+ + L P  VT+  L  G
Sbjct: 486 VFSDMLARDLKPNVVTYSILIDG 508



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 46/226 (20%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI G+CK NRID+A +   EM E+G+E +V  Y+ L++G C+R          + + 
Sbjct: 607 YTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKR----------RDME 656

Query: 62  NAEKVFDEMRVRGIEP-------------DVTSFSIVLHVYSRAHQPQLSLD-------- 100
           +A+ +F E+   G+ P             D+ +    L  Y +    ++  D        
Sbjct: 657 SAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLI 716

Query: 101 -------KLNF-------MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                  +L F       M  KGI P + T+  +V  LC+ G++E+A ++L EM R  + 
Sbjct: 717 DGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMT 776

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           PS   YN     Y    +   A  L+ +M + GL VP+  +Y+ILI
Sbjct: 777 PSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGL-VPDDVTYDILI 821



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 141/338 (41%), Gaps = 59/338 (17%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH------------- 51
           ++    K  R++ AE +  E  ERGV+ +   Y++++  VC++ + +             
Sbjct: 226 MVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERG 285

Query: 52  --PSER----------FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
             PSE            +  +  A ++ +EM   G   ++   + ++  Y        +L
Sbjct: 286 WVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSAL 345

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           +  N + E G+ P   TYS +++  C+ G IE A EL  +M  NG+ PS    N   + Y
Sbjct: 346 NLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGY 405

Query: 160 RGRKDANGAMKLYRQMKEDG-------------LC--------------------VPNMH 186
                   A KL+ +  + G             LC                    VPN+ 
Sbjct: 406 LKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVV 465

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
           SYN +I        MDM   +++D+    L P++ +Y++LI G  +K   ++A   F +M
Sbjct: 466 SYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQM 525

Query: 247 IEKGLLPQKVTFETLYRGLIQSDMLRTWR-RLKKKLDE 283
           +   + P   TF T+  GL +   +   R +LK  L+E
Sbjct: 526 LSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEE 563



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 105/254 (41%), Gaps = 18/254 (7%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           I+ A+RF  E+  R        +N LLN   R             I NA   F+ M  + 
Sbjct: 138 INCAKRFDFELDHR-------VFNYLLNAYIR----------ANRIENAIDCFNAMICQD 180

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           + P V   +I+L    R +      D  N M  +GI     T   +V+     GR+E+AE
Sbjct: 181 VIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAE 240

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           E   E    GV   A  Y+   +    + ++N  ++L  +MKE G  VP+  ++  +I  
Sbjct: 241 EYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGW-VPSEATFTSVIVA 299

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
            +A   M     +  ++   G   +L   T L+ G C +     A   F ++ E GL P 
Sbjct: 300 CVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPN 359

Query: 255 KVTFETLYRGLIQS 268
           KVT+  L  G   S
Sbjct: 360 KVTYSVLIEGCCNS 373



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 81/164 (49%), Gaps = 11/164 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y S+I G+  +N ++ A  +  +MI   +  ++ TY  L++G+ +          E  +
Sbjct: 676 VYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLK----------EGRL 725

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  ++ EM  +GI PD+ +F ++++      Q + +   L  M  K + P+V  Y+++
Sbjct: 726 VFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTL 785

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK-EYRGRK 163
           +      G +++A  L  EM+  G+ P   TY+     +++G +
Sbjct: 786 IAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKGDR 829



 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 112/299 (37%), Gaps = 66/299 (22%)

Query: 10  CKINRIDMAERFLGEM-IERGVEPNVVTYNVLLNGVCRRASLHPSER------------- 55
           C +N    A R+      +RG    V  Y VLL+ + R    H   R             
Sbjct: 69  CHVNDPQSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPETHGHARKLLNRYVSGDSDP 128

Query: 56  ----FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC 111
               F   + N  K FD       E D   F+ +L+ Y RA++ + ++D  N M  + + 
Sbjct: 129 SPVVFVDHLINCAKRFD------FELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVI 182

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P V   + ++  L     I +  +L  +MV  G+      Y   F               
Sbjct: 183 PWVPYMNILLTALVRRNMIGELRDLYNKMVLRGI------YGDHF--------------- 221

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
                          + ++++   +   R++   E + + K  G+  D  +Y+++I  +C
Sbjct: 222 ---------------TVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVC 266

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI-QSDMLRTWRRLKKKLDEESITFG 289
           +K       +   EM E+G +P + TF ++    + Q +M+   R     L EE I  G
Sbjct: 267 KKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALR-----LKEEMINCG 320


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 151/304 (49%), Gaps = 21/304 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y+++I G+CK   +D A   L EM+ R G+ P+VVTY  +++G+CR   +   +R  + +
Sbjct: 80  YSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKM---DRACEMV 136

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKL--NFMKEKGICPTVATYS 118
           R       EM+++G+EPD  +FS ++  +  A +   +L KL    +      P V TY+
Sbjct: 137 R-------EMKLKGVEPDKFTFSALITGWCNARKVDEAL-KLYKEILTSSSWKPDVVTYT 188

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++   C  G +E A ++LG M      P+  TY+          D + A+ L+R+M   
Sbjct: 189 ALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSK 248

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G CVPN+ +Y  LI    A +++D  R + +++  +   PD  SY  L+ G C   + +E
Sbjct: 249 G-CVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEE 307

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL------KKKLDEESITFGSEF 292
           A Q F EM  K  LP ++T+  L RG   +  L   R L         +D + +T+    
Sbjct: 308 AKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVV 367

Query: 293 QNYH 296
             Y 
Sbjct: 368 AGYS 371



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 146/288 (50%), Gaps = 16/288 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T +I G+CK N++  A     +M E  V PN  TYNV++NG+C+           +   
Sbjct: 10  WTIIIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCK----------ARLTS 58

Query: 62  NAEKVFDEMR-VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK-GICPTVATYSS 119
            A +V  EMR  + + PD+ ++S V++ + +  +   + + L  M  + GI P V TY+S
Sbjct: 59  KAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTS 118

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           VV  LC  G+++ A E++ EM   GV P   T++     +   +  + A+KLY+++    
Sbjct: 119 VVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSS 178

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              P++ +Y  LI  F     ++   ++   ++G    P++ +Y+ L+HGLC+     +A
Sbjct: 179 SWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQA 238

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              F  M  KG +P  VT+ TL  GL  +  +   R L   +DE + T
Sbjct: 239 LDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLL---MDEMTAT 283



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 128/277 (46%), Gaps = 11/277 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+CK   ++ A + LG M  R   PNVVTY+ LL+G+C+   L           
Sbjct: 187 YTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLD---------- 236

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F  M  +G  P+V +++ ++H    AH+   +   ++ M      P   +Y++++
Sbjct: 237 QALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALL 296

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GRIE+A++L  EM      P   TY C  + +        A  L   MK     
Sbjct: 297 DGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGI 356

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+I++  +    R     E   ++    + P+  +Y+ LI GLC+  +   A +
Sbjct: 357 DPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAME 416

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ-SDMLRTWRRL 277
               M+ K + P   TF ++   L +  DM   W+ L
Sbjct: 417 VLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLL 453



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 134/275 (48%), Gaps = 19/275 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G+C++ RI+ A++   EM  +   P+ +TY  L+ G C  + L  +    + ++
Sbjct: 292 YNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMK 351

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A          GI+PDV ++SIV+  YSRA +   + + +  M  + + P   TYSS++
Sbjct: 352 TAA---------GIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLI 402

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR++ A E+L  MV   V PS  T+N          D + A KL   M   GL 
Sbjct: 403 DGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGL- 461

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVK--------GSGLGPDLDSYTMLIHGLCEK 233
            P M +Y  L+  F    RM++  E++  ++         + L P+  +++ LI GLC+ 
Sbjct: 462 EPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPE-QAFSALIRGLCKA 520

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           ++  +A     E+  +   P +     +  GL+++
Sbjct: 521 REIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRA 555



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 52/186 (27%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI G CK  R+D A   L  M+ + VEP+V T+N ++  +CR   +           
Sbjct: 398 YSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMD---------- 447

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE-------------- 107
            A K+   M   G+EP + +++ +L  +SR  + +++ +    M++              
Sbjct: 448 EAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPE 507

Query: 108 -------KGIC---------------------PTVATYSSVVKCLCSCGRIEDAEELLGE 139
                  +G+C                     P      ++V  L   GR E+A +L+  
Sbjct: 508 QAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINS 567

Query: 140 MVRNGV 145
           + + G+
Sbjct: 568 ISKVGL 573


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 140/264 (53%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++   CK  ++D A   L  M+ +G+ PNVV+YN ++ G CR+ ++           
Sbjct: 472 YNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMD---------- 521

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  VF +M  R ++P+V ++SI++    +    + +LD  + M    I PT  T+++++
Sbjct: 522 MASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTII 581

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++ +A + L   +  G  PS  TYN     +    + + A+ +YR+M E G+ 
Sbjct: 582 NGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVS 641

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  LI  F   NR+D+  +  ++++  GL  D+ +Y+ LI G C+++  + A  
Sbjct: 642 -PNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQD 700

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F E++E GL P ++ + ++  G 
Sbjct: 701 LFFELLEVGLSPNRIVYNSMISGF 724



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 147/321 (45%), Gaps = 46/321 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G C+   +DMA     +M+ R ++PNVVTY++L++G  ++     SE+      
Sbjct: 507 YNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGD---SEK------ 557

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +FD+M    I P   +F+ +++   +  Q   + DKL    E+G  P+  TY+S+V
Sbjct: 558 -ALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIV 616

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETY----NCFFKEYR----------------- 160
                 G I+ A  +  EM   GV P+  TY    N F K  R                 
Sbjct: 617 DGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLE 676

Query: 161 --------------GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
                          R+D   A  L+ ++ E GL  PN   YN +I  F  LN M+    
Sbjct: 677 LDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLS-PNRIVYNSMISGFRDLNNMEAALV 735

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
            +  +    +  DL +YT LI GL ++ +   A   ++EM+ KG++P  +TF  L  GL 
Sbjct: 736 WYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLC 795

Query: 267 QSDMLRTWRRLKKKLDEESIT 287
               L   R++ +++D +++T
Sbjct: 796 NKGQLENARKILEEMDRKNMT 816



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 139/271 (51%), Gaps = 11/271 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + ++I G CK+ ++  A   L   +E G  P+ +TYN +++G  +          E  I 
Sbjct: 577 FNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIK----------EGNID 626

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  V+ EM   G+ P+V +++ +++ + ++++  L+L   + M+EKG+   V  YS+++
Sbjct: 627 SALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALI 686

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    +E A++L  E++  G+ P+   YN     +R   +   A+  Y++M  D + 
Sbjct: 687 DGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIP 746

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++ +Y  LI   +   R+    +++ ++   G+ PD+ ++ +L++GLC K + + A +
Sbjct: 747 C-DLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARK 805

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
              EM  K + P  + + TL  G  +   L+
Sbjct: 806 ILEEMDRKNMTPSVLIYNTLIAGYFREGNLK 836



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 128/276 (46%), Gaps = 26/276 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------------ 48
           ++  L+  + + NRI+ A      MI + V P V   N+LL  + RR             
Sbjct: 192 VFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKM 251

Query: 49  ----------SLHPSERF---EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                     ++H   R    E  +  AE+ F E + RG++ D  ++SI++    +    
Sbjct: 252 VLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNS 311

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
            L L+ L  MKE+G  P+ AT++SV+    + G + +A  L  EM+  G   +       
Sbjct: 312 NLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSL 371

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            K Y  + + + A+ L+ ++ EDGL  PN  +Y++LI        ++   E++  +K +G
Sbjct: 372 MKGYCAQGNLDSALNLFNKITEDGL-FPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNG 430

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 251
           + P + +   L+ G  +   W+EA + F E ++ G+
Sbjct: 431 IPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGV 466



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 117/263 (44%), Gaps = 12/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I   CK    ++    L EM ERG  P+  T+  ++     + ++  + R ++ + 
Sbjct: 298 YSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMI 357

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N  K            ++   + ++  Y        +L+  N + E G+ P   TYS ++
Sbjct: 358 NCGKPM----------NLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLI 407

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C+ G IE A EL  +M  NG+ PS    N   + Y        A KL+ +  + G  
Sbjct: 408 EGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCG-- 465

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V N+ +YNI++       +MD    + +++   G+ P++ SY  +I G C K     A  
Sbjct: 466 VANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASS 525

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F +M+ + L P  VT+  L  G
Sbjct: 526 VFSDMLARDLKPNVVTYSILIDG 548



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 46/226 (20%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI G+CK NRID+A +   EM E+G+E +V  Y+ L++G C+R          + + 
Sbjct: 647 YTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKR----------RDME 696

Query: 62  NAEKVFDEMRVRGIEP-------------DVTSFSIVLHVYSRAHQPQLSLD-------- 100
           +A+ +F E+   G+ P             D+ +    L  Y +    ++  D        
Sbjct: 697 SAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLI 756

Query: 101 -------KLNF-------MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                  +L F       M  KGI P + T+  +V  LC+ G++E+A ++L EM R  + 
Sbjct: 757 DGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMT 816

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           PS   YN     Y    +   A  L+ +M + GL VP+  +Y+ILI
Sbjct: 817 PSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGL-VPDDVTYDILI 861



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 105/254 (41%), Gaps = 18/254 (7%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           I+ A+RF  E+  R        +N LLN   R             I NA   F+ M  + 
Sbjct: 178 INCAKRFDFELDHR-------VFNYLLNAYIR----------ANRIENAIDCFNAMICQD 220

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           + P V   +I+L    R +      D  N M  +GI     T   +V+     GR+E+AE
Sbjct: 221 VIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAE 280

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           E   E    GV   A  Y+   +    + ++N  ++L  +MKE G  VP+  ++  +I  
Sbjct: 281 EYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGW-VPSEATFTSVIVA 339

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
            +A   M     +  ++   G   +L   T L+ G C +     A   F ++ E GL P 
Sbjct: 340 CVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPN 399

Query: 255 KVTFETLYRGLIQS 268
           KVT+  L  G   S
Sbjct: 400 KVTYSVLIEGCCNS 413



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 81/164 (49%), Gaps = 11/164 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y S+I G+  +N ++ A  +  +MI   +  ++ TY  L++G+ +          E  +
Sbjct: 716 VYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLK----------EGRL 765

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  ++ EM  +GI PD+ +F ++++      Q + +   L  M  K + P+V  Y+++
Sbjct: 766 VFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTL 825

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK-EYRGRK 163
           +      G +++A  L  EM+  G+ P   TY+     +++G +
Sbjct: 826 IAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKGDR 869



 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 108/282 (38%), Gaps = 32/282 (11%)

Query: 10  CKINRIDMAERFLGEM-IERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           C +N    A R+      +RG    V  Y VLL+ + R    H          +A K+ +
Sbjct: 109 CHVNDPQSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPETH---------GHARKLLN 159

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
             R    + D +    V H+ + A +    LD                ++ ++       
Sbjct: 160 --RYVSGDSDPSPVVFVDHLINCAKRFDFELDH-------------RVFNYLLNAYIRAN 204

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           RIE+A +    M+   V P     N        R        LY +M   G+   +  + 
Sbjct: 205 RIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGI-YGDHFTV 263

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           ++++   +   R++   E + + K  G+  D  +Y+++I  +C+K       +   EM E
Sbjct: 264 HVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKE 323

Query: 249 KGLLPQKVTFETLYRGLI-QSDMLRTWRRLKKKLDEESITFG 289
           +G +P + TF ++    + Q +M+   R     L EE I  G
Sbjct: 324 RGWVPSEATFTSVIVACVAQGNMVEALR-----LKEEMINCG 360


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 144/286 (50%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+   CK  ++  A     +M+++G+ P  V+YN ++ G CR+ +L           
Sbjct: 456 YNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDM--------- 506

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  VF +M   G++P+V ++SI++  Y +    + +    + M ++ I P+  TY+  +
Sbjct: 507 -AASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKI 565

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A+++L + V  G  P   TYN     +      + A+  YR+M E G+ 
Sbjct: 566 NGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVS 625

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  LI  F   N  D+  ++ N+++  GL  D+ +Y  LI G C+KQ  + A  
Sbjct: 626 -PNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASW 684

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            F E+++ GL P  V + +L  G    + +     L+K++  E I+
Sbjct: 685 LFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGIS 730



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 143/286 (50%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y   I G CK+ R   A+  L + +E+G  P  +TYN +++G  +          E ++ 
Sbjct: 561 YNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIK----------EGSVS 610

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A   + EM   G+ P+V +++ +++ + + +   L+L   N M+ KG+   +A Y +++
Sbjct: 611 SALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALI 670

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    IE A  L  E++  G+ P++  YN     YR   +   A+ L ++M  +G+ 
Sbjct: 671 DGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGIS 730

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++ +Y  LI   +   R+ +  ++++++   G+ PD+  YT+LI+GLC K + + A +
Sbjct: 731 C-DLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQK 789

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              EM    + P    +  L  G  ++  L+   RL  ++ ++ +T
Sbjct: 790 ILAEMERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLT 835



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 141/335 (42%), Gaps = 48/335 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G C+   +DMA     +M++ G++PNV+TY++L++G  +               
Sbjct: 491 YNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGD----------TE 540

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  VFD M    I P   +++I ++   +  +   + D L    EKG  P   TY+S++
Sbjct: 541 YAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIM 600

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
                 G +  A     EM  +GV P+  TY      +    + + A+K+  +M+     
Sbjct: 601 DGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLE 660

Query: 178 ----------DGLC--------------------VPNMHSYNILIGMFMALNRMDMVREI 207
                     DG C                     PN   YN LI  +  LN M+    +
Sbjct: 661 LDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNL 720

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              + G G+  DL +YT LI GL ++ +   A   + EM  KG++P  + +  L  GL  
Sbjct: 721 QKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCG 780

Query: 268 SDMLRTWRRLKKKLDEESITFGSEFQNY----HFK 298
              L   +++  +++ +SIT      N     HFK
Sbjct: 781 KGQLENAQKILAEMERDSITPNVPIYNALIAGHFK 815



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 107/216 (49%), Gaps = 26/216 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR-----ASLHPSERF 56
           YT+LI G+CK N  D+A +   EM  +G+E ++  Y  L++G C++     AS   SE  
Sbjct: 631 YTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELL 690

Query: 57  E-----------------KTIRNAEKVFD---EMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +                 + + N E   +    M   GI  D+ +++ ++    +  +  
Sbjct: 691 DGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLV 750

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           L+LD  + M  KGI P +  Y+ ++  LC  G++E+A+++L EM R+ + P+   YN   
Sbjct: 751 LALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALI 810

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
             +    +   A +L+ +M + GL  PN  +Y+ILI
Sbjct: 811 AGHFKAGNLQEAFRLHNEMLDKGL-TPNDTTYDILI 845



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 119/268 (44%), Gaps = 14/268 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I  +CK   +++A   L +M ++G  P+  T+  ++    ++ ++  + R +    
Sbjct: 282 YSIVIQAFCKNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLK---- 337

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 DEM   G++ +V   + ++  Y +  +   +L+  + M E G  P   TY+ ++
Sbjct: 338 ------DEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLI 391

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G +  A +L  +M    +CP+    N   + +   +    A KL+    E   C
Sbjct: 392 EWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESREEASKLF---DEAVAC 448

Query: 182 -VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            + N+ +YN L+       +M     +W  +   GL P   SY  +I G C +     A 
Sbjct: 449 DIANIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAA 508

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             F +M++ GL P  +T+  L  G  ++
Sbjct: 509 SVFSDMLDCGLKPNVITYSILMDGYFKN 536



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 136/324 (41%), Gaps = 62/324 (19%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKT 59
           +Y  L+  + K N+++ A      ++E  + P +   N LL  + +   ++ + E +EK 
Sbjct: 176 IYNYLLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYEAREVYEKM 235

Query: 60  I------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           +                          A+K F E + RG++ D  ++SIV+  + +    
Sbjct: 236 VLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDV 295

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKC----------------LCSCG----------- 128
           +L+   L  M++KG  P+  T++SV+                  + SCG           
Sbjct: 296 ELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTL 355

Query: 129 --------RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
                   ++  A E   +M  NG  P+  TY    +      +   A  LY QMK   +
Sbjct: 356 VKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNI 415

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P +   N LI  F+ +   +   +++++     +  ++ +Y  L+  LC++ K  EA 
Sbjct: 416 C-PTVFIVNSLIRGFLKVESREEASKLFDEAVACDIA-NIFTYNSLLSWLCKEGKMSEAT 473

Query: 241 QYFVEMIEKGLLPQKVTFETLYRG 264
             + +M++KGL P KV++ ++  G
Sbjct: 474 TLWQKMLDKGLAPTKVSYNSMILG 497



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 11/111 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G C   +++ A++ L EM    + PNV  YN L+ G  +  +L  + R     
Sbjct: 770 IYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKAGNLQEAFRLH--- 826

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL-SLDKLNFMKEKGI 110
                  +EM  +G+ P+ T++ I+++   +     L SL  L F   KG+
Sbjct: 827 -------NEMLDKGLTPNDTTYDILINGKIKGGNSALKSLLSLKFKDGKGM 870



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 41/231 (17%), Positives = 94/231 (40%), Gaps = 22/231 (9%)

Query: 72  VRGIEPDVTSFSIVLHVYSRAH----QPQLSLDKL---------NFMKEKGICPT----- 113
            RG    + S  ++LH+ +R+     Q Q  L++          N + +  I  T     
Sbjct: 111 TRGFVRSLDSLCVLLHILTRSSETLKQAQNLLNRFISGDSGPMPNILVDHFIGSTKRFDF 170

Query: 114 ---VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMK 170
              +  Y+ ++       ++ DA      +V + + P  +  N              A +
Sbjct: 171 DSDIRIYNYLLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYEARE 230

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           +Y +M   G+   +  + +I++   +  N  +  ++ + + K  G+  D  +Y+++I   
Sbjct: 231 VYEKMVLKGVH-GDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAF 289

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           C+    + AC    +M +KG +P + TF ++    ++   +    RLK ++
Sbjct: 290 CKNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEM 340


>gi|15224753|ref|NP_179518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334184304|ref|NP_001189552.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546774|sp|Q6NKW7.2|PP164_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g19280
 gi|3135258|gb|AAC16458.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251769|gb|AEC06863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251770|gb|AEC06864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 693

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 138/264 (52%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+C + R D A ++ G +++ G  P++ T  +L+ G C R           +I 
Sbjct: 411 YTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILI-GACSRFG---------SIS 460

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE VF  M+  G++ DV +++ ++H Y + HQ     + ++ M+  GI P VATY+ ++
Sbjct: 461 DAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILI 520

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +   G I++A E++ E++R G  PS   +      +  R D   A  L+  M  D   
Sbjct: 521 HSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMA-DLRM 579

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ + + L+  +    RM+    ++N +  +GL PD+  Y  LIHG C     ++AC+
Sbjct: 580 KPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACE 639

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
               M+++G+LP + T   L  GL
Sbjct: 640 LIGLMVQRGMLPNESTHHALVLGL 663



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 117/294 (39%), Gaps = 49/294 (16%)

Query: 6   IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEK 65
           I G+CK+ + + A + +     R   PN+  Y+  L+ +C    +            A  
Sbjct: 348 IDGFCKVGKPEEAIKLIHSFRLR---PNIFVYSSFLSNICSTGDM----------LRAST 394

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           +F E+   G+ PD   ++ ++  Y    +   +      + + G  P++ T + ++    
Sbjct: 395 IFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACS 454

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
             G I DAE +   M   G+     TYN     Y      N   +L  +M+  G+  P++
Sbjct: 455 RFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGIS-PDV 513

Query: 186 HSYNILIGMFMALNRMDMVREI---------------WNDVKGS---------------- 214
            +YNILI   +    +D   EI               + DV G                 
Sbjct: 514 ATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFY 573

Query: 215 ----GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
                + PD+ + + L+HG C+ Q+ ++A   F ++++ GL P  V + TL  G
Sbjct: 574 MADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHG 627



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 25/190 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL-HPSERFEKTI 60
           Y +L++G+ K ++++     + EM   G+ P+V TYN+L++ +  R  +   +E   + I
Sbjct: 481 YNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELI 540

Query: 61  RNA--------EKVFDEMRVRG----------------IEPDVTSFSIVLHVYSRAHQPQ 96
           R            V      RG                ++PDV + S +LH Y +A + +
Sbjct: 541 RRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRME 600

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++   N + + G+ P V  Y++++   CS G IE A EL+G MV+ G+ P+  T++   
Sbjct: 601 KAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALV 660

Query: 157 KEYRGRKDAN 166
               G++  N
Sbjct: 661 LGLEGKRFVN 670



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/329 (19%), Positives = 128/329 (38%), Gaps = 78/329 (23%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           SL+    +++ +++A  F+  M+ RG   N    ++ +   C          F+K     
Sbjct: 241 SLLKEILRVHGLELAREFVEHMLSRGRHLNAAVLSLFIRKYCSDG------YFDK----G 290

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC------------ 111
            ++   M+  GI PD+ +F++ +    +A   + +   L  +K  GI             
Sbjct: 291 WELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDG 350

Query: 112 --------------------PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
                               P +  YSS +  +CS G +  A  +  E+   G+ P    
Sbjct: 351 FCKVGKPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVC 410

Query: 152 YNCFFKEY--RGRKD---------------------------------ANGAMKLYRQMK 176
           Y      Y   GR D                                  + A  ++R MK
Sbjct: 411 YTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMK 470

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
            +GL + ++ +YN L+  +   ++++ V E+ ++++ +G+ PD+ +Y +LIH +  +   
Sbjct: 471 TEGLKL-DVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYI 529

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            EA +   E+I +G +P  + F  +  G 
Sbjct: 530 DEANEIISELIRRGFVPSTLAFTDVIGGF 558



 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 112/276 (40%), Gaps = 38/276 (13%)

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           E+ +  A K+  ++   GI P       +L    R H  +L+ + +  M  +G     A 
Sbjct: 214 ERKVNMALKLTYKVDQFGIFPSRGVCISLLKEILRVHGLELAREFVEHMLSRGRHLNAAV 273

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR---KDANGA---MK 170
            S  ++  CS G  +   ELL  M   G+ P    +  F  +       K+A      +K
Sbjct: 274 LSLFIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLK 333

Query: 171 LYRQMKE--------DGLC--------VPNMHSYNILIGMFMALNRM-------DMVRE- 206
           L+   ++        DG C        +  +HS+ +   +F+  + +       DM+R  
Sbjct: 334 LFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRAS 393

Query: 207 -IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            I+ ++   GL PD   YT +I G C   +  +A QYF  +++ G  P  +T  T+  G 
Sbjct: 394 TIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSG-NPPSLTTSTILIGA 452

Query: 266 IQ-----SDMLRTWRRLKKK-LDEESITFGSEFQNY 295
                  SD    +R +K + L  + +T+ +    Y
Sbjct: 453 CSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGY 488



 Score = 41.2 bits (95), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI+G+C +  I+ A   +G M++RG+ PN  T++ L+ G+         +RF  + 
Sbjct: 620 LYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVLGL-------EGKRFVNSE 672

Query: 61  RNAEKVFDEMRV 72
            +A  + +E+ V
Sbjct: 673 THASMLLEEIIV 684


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 140/264 (53%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI   CK  RI  A+  L  M +RG +P++VTYN L+ G C R ++H          
Sbjct: 268 FNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVH---------- 317

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F+ M  RG+EPDV ++++++  Y +      ++     +  K + PT+A+Y+S++
Sbjct: 318 EARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLI 377

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+ GRI   ++LL EM  +   P   TYN              A+ +   M + G+ 
Sbjct: 378 DGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGV- 436

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN ++  +   N +++ ++I+N +  SGL PD+ +Y +LI+G C+ +   EA  
Sbjct: 437 KPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIV 496

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F EM  K L+P   ++ +L  GL
Sbjct: 497 LFKEMRHKNLIPDIASYNSLIDGL 520



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 144/288 (50%), Gaps = 16/288 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI   CK  RI  A   L  M+++GV+PN+VTYN +++G C R            + 
Sbjct: 408 YNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLR----------NNVN 457

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F+ M   G+EPD+ +++++++ Y +      ++     M+ K + P +A+Y+S++
Sbjct: 458 VAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLI 517

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+ GRI   +ELL EM  +G  P   TYN     +   +  + A+ L+RQ+ E    
Sbjct: 518 DGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEG--I 575

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ ++ + ++       ++ M  +    +   G  P++ +YT+LI+ LC+   + EA  
Sbjct: 576 WPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAML 635

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
              +M +    P  +TFE +   L+Q    R      +KL EE I  G
Sbjct: 636 LLSKMEDNDRPPDAITFEIIIGVLLQ----RNETDKAEKLREEMIARG 679



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 135/264 (51%), Gaps = 11/264 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY++LI G CK   +  A     ++ ERG+  + VTYN L++G C         R+++  
Sbjct: 197 MYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVG------RWQEVT 250

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           +   K+  E     ++PD  +F+I++    +  +   +   L  M ++G  P + TY+++
Sbjct: 251 QLLTKMVRE----NVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNAL 306

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  CS   + +A EL   MV+ G+ P    YN     Y   K  + AM L++++    L
Sbjct: 307 MEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL 366

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VP + SYN LI       R+  V+++ +++ GS   PD+ +Y +LI  LC++ +  EA 
Sbjct: 367 -VPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEAL 425

Query: 241 QYFVEMIEKGLLPQKVTFETLYRG 264
              V M++KG+ P  VT+  +  G
Sbjct: 426 GVLVMMMKKGVKPNIVTYNAMMDG 449



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 139/310 (44%), Gaps = 35/310 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           +T LI  +   +    A   L  +++ G +PN+VT+N ++NG C    +  +  F     
Sbjct: 93  FTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLL 152

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  I+ A  +  EM    ++P++  +S ++    +     
Sbjct: 153 AQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVS 212

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   + + E+GI     TY+S++   CS GR ++  +LL +MVR  V P   T+N   
Sbjct: 213 DALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILI 272

Query: 157 KEY--RGR-KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
                 GR  +A G + +  +  E     P++ +YN L+  + +   +   RE++N +  
Sbjct: 273 DALCKEGRILEAQGVLAMMSKRGEK----PDIVTYNALMEGYCSRENVHEARELFNRMVK 328

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT 273
            GL PD+ +Y +LI G C+ +   EA   F E+  K L+P   ++ +L  GL  S  +  
Sbjct: 329 RGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRI-- 386

Query: 274 WRRLKKKLDE 283
              +KK LDE
Sbjct: 387 -SHVKKLLDE 395



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 11/179 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G C + RI   +  L EM + G  P+V+TYN+LL+  C+      ++ F+K I 
Sbjct: 513 YNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCK------TQPFDKAIS 566

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++     V GI PD  +   ++    +  + +++ D L  +   G  P V TY+ ++
Sbjct: 567 LFRQI-----VEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILI 621

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             LC  G   +A  LL +M  N   P A T+         R + + A KL  +M   GL
Sbjct: 622 NALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARGL 680



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 103/256 (40%), Gaps = 11/256 (4%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           C+   +D A      M+     P    ++ LL  + R    +P+         A  +F +
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGH-YPT---------AISLFTQ 80

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           ++ +GI P + +F+I+++ Y        +   L  + + G  P + T+++++   C  G 
Sbjct: 81  LQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGM 140

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           I  A +    ++  G      TY               A+ L ++M++  +  PN+  Y+
Sbjct: 141 IFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSV-QPNLVMYS 199

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            LI        +     + + +   G+  D  +Y  LI G C   +W+E  Q   +M+ +
Sbjct: 200 ALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRE 259

Query: 250 GLLPQKVTFETLYRGL 265
            + P   TF  L   L
Sbjct: 260 NVDPDDYTFNILIDAL 275



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/162 (19%), Positives = 71/162 (43%), Gaps = 1/162 (0%)

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C    ++DA      MVR    P    ++              A+ L+ Q++  G+  P+
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGIS-PS 89

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + ++ ILI  +   +       +   +  SG  P+L ++  +I+G C      +A  +  
Sbjct: 90  IATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQ 149

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            ++ +G L  + T+ TL  GL ++  ++    L +++++ S+
Sbjct: 150 NLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSV 191


>gi|46518477|gb|AAS99720.1| At2g19280 [Arabidopsis thaliana]
 gi|62319953|dbj|BAD94048.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|110738808|dbj|BAF01327.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 693

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 138/264 (52%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+C + R D A ++ G +++ G  P++ T  +L+ G C R           +I 
Sbjct: 411 YTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILI-GACSRFG---------SIS 460

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE VF  M+  G++ DV +++ ++H Y + HQ     + ++ M+  GI P VATY+ ++
Sbjct: 461 DAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILI 520

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +   G I++A E++ E++R G  PS   +      +  R D   A  L+  M  D   
Sbjct: 521 HSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMA-DLRM 579

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ + + L+  +    RM+    ++N +  +GL PD+  Y  LIHG C     ++AC+
Sbjct: 580 KPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACE 639

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
               M+++G+LP + T   L  GL
Sbjct: 640 LIGLMVQRGMLPNESTHHALVLGL 663



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 117/294 (39%), Gaps = 49/294 (16%)

Query: 6   IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEK 65
           I G+CK+ + + A + +     R   PN+  Y+  L+ +C    +            A  
Sbjct: 348 IDGFCKVGKPEEAIKLIHSFRLR---PNIFVYSSFLSNICSTGDM----------LRAST 394

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           +F E+   G+ PD   ++ ++  Y    +   +      + + G  P++ T + ++    
Sbjct: 395 IFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACS 454

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
             G I DAE +   M   G+     TYN     Y      N   +L  +M+  G+  P++
Sbjct: 455 RFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGIS-PDV 513

Query: 186 HSYNILIGMFMALNRMDMVREI---------------WNDVKGS---------------- 214
            +YNILI   +    +D   EI               + DV G                 
Sbjct: 514 ATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFY 573

Query: 215 ----GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
                + PD+ + + L+HG C+ Q+ ++A   F ++++ GL P  V + TL  G
Sbjct: 574 MADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHG 627



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 25/190 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL-HPSERFEKTI 60
           Y +L++G+ K ++++     + EM   G+ P+V TYN+L++ +  R  +   +E   + I
Sbjct: 481 YNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELI 540

Query: 61  RNA--------EKVFDEMRVRG----------------IEPDVTSFSIVLHVYSRAHQPQ 96
           R            V      RG                ++PDV + S +LH Y +A + +
Sbjct: 541 RRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRME 600

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++   N + + G+ P V  Y++++   CS G IE A EL+G MV+ G+ P+  T++   
Sbjct: 601 KAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALV 660

Query: 157 KEYRGRKDAN 166
               G++  N
Sbjct: 661 LGLEGKRFVN 670



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/329 (19%), Positives = 128/329 (38%), Gaps = 78/329 (23%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           SL+    +++ +++A  F+  M+ RG   N    ++ +   C          F+K     
Sbjct: 241 SLLKEILRVHGLELAREFVEHMLSRGRHLNAAVLSLFIRKYCSDG------YFDK----G 290

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC------------ 111
            ++   M+  GI PD+ +F++ +    +A   + +   L  +K  GI             
Sbjct: 291 WELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDG 350

Query: 112 --------------------PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
                               P +  YSS +  +CS G +  A  +  E+   G+ P    
Sbjct: 351 FCKVGKPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVC 410

Query: 152 YNCFFKEY--RGRKD---------------------------------ANGAMKLYRQMK 176
           Y      Y   GR D                                  + A  ++R MK
Sbjct: 411 YTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMK 470

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
            +GL + ++ +YN L+  +   ++++ V E+ ++++ +G+ PD+ +Y +LIH +  +   
Sbjct: 471 TEGLKL-DVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYI 529

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            EA +   E+I +G +P  + F  +  G 
Sbjct: 530 DEANEIISELIRRGFVPSTLAFTDVIGGF 558



 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 112/276 (40%), Gaps = 38/276 (13%)

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           E+ +  A K+  ++   GI P       +L    R H  +L+ + +  M  +G     A 
Sbjct: 214 ERKVNMALKLTYKVDQFGIFPSRGVCISLLKEILRVHGLELAREFVEHMLSRGRHLNAAV 273

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR---KDANGA---MK 170
            S  ++  CS G  +   ELL  M   G+ P    +  F  +       K+A      +K
Sbjct: 274 LSLFIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLK 333

Query: 171 LYRQMKE--------DGLC--------VPNMHSYNILIGMFMALNRM-------DMVRE- 206
           L+   ++        DG C        +  +HS+ +   +F+  + +       DM+R  
Sbjct: 334 LFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRAS 393

Query: 207 -IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            I+ ++   GL PD   YT +I G C   +  +A QYF  +++ G  P  +T  T+  G 
Sbjct: 394 TIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSG-NPPSLTTSTILIGA 452

Query: 266 IQ-----SDMLRTWRRLKKK-LDEESITFGSEFQNY 295
                  SD    +R +K + L  + +T+ +    Y
Sbjct: 453 CSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGY 488



 Score = 41.2 bits (95), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI+G+C +  I+ A   +G M++RG+ PN  T++ L+ G+         +RF  + 
Sbjct: 620 LYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVLGL-------EGKRFVNSE 672

Query: 61  RNAEKVFDEMRV 72
            +A  + +E+ V
Sbjct: 673 THASMLLEEIIV 684


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 138/276 (50%), Gaps = 5/276 (1%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G C  +RI  A R    M + G  PN VTY  L+ G+C+  +++ + +  K + 
Sbjct: 164 YTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEML 223

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N    +        +P V ++SI++    +  +   + +    MK +G+ P V +YS+++
Sbjct: 224 NDASQYG----VNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLI 279

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+ + ++ L  EMV  GV P   T++              A KL   M + G+ 
Sbjct: 280 HGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGI- 338

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN+ +YN LI  F  +  ++  RE++  +   GL PD  SYT LI+G C+  K KEA  
Sbjct: 339 VPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMN 398

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            + EM++ G  P   T+ TL +GL Q   +   ++L
Sbjct: 399 LYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKL 434



 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 143/291 (49%), Gaps = 17/291 (5%)

Query: 4   SLIYGWCKINRID--MAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           SL    CK   I    A  F   M+     P + ++N LL G+ +    H S+ F     
Sbjct: 59  SLFLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKIN--HYSQLFS---- 112

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +++EMR+ G+ PD+ + SI+ +     ++   +L  +  +  +G  P V TY++++
Sbjct: 113 ----LYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLI 168

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
           K LC   RI +A  L   M + G  P+A TY    K      + N A+KL+++M  D   
Sbjct: 169 KGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQ 228

Query: 181 ----CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
               C P + +Y+I+I     + R D  +E++ ++K  G+ PD+ SY+ LIHG C   KW
Sbjct: 229 YGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKW 288

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            ++   F EM+++G+ P  VTF  L   L +   +   ++L + + +  I 
Sbjct: 289 DQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIV 339



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 148/286 (51%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ LI   CK  ++  A++ L  MI+RG+ PN++TYN L++G C    L+          
Sbjct: 310 FSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLN---------- 359

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F  M  +G+EPD  S++ +++ Y +  + + +++  N M + G  P V TY +++
Sbjct: 360 SARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLL 419

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K L   G++ DA++L G M   GV  +++ Y  F            AM+L+ ++K     
Sbjct: 420 KGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFK 479

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N+ +Y+ LI       +++   E++  +   GL PD+ +Y ++IHG C+  +   A  
Sbjct: 480 L-NIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANI 538

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            F +M E G  P  + + TL  G  + + L    +L  K+ ++ ++
Sbjct: 539 LFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVS 584



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 82/175 (46%), Gaps = 25/175 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH---------P 52
           Y +L+ G  +  ++  A++  G M   GV  N   Y + L+G+C+   L           
Sbjct: 415 YGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELK 474

Query: 53  SERFEKTIRN----------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           S  F+  I N                A ++F+++   G++PDV +++I++H + +  Q  
Sbjct: 475 SYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVD 534

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
            +      M+E G  P +  Y++++   C   ++E+  +LL +MV+  V P+A +
Sbjct: 535 NANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAAS 589



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 3/167 (1%)

Query: 125 CSCGRIE--DAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
           C  G I    A      M+R+   P   ++N            +    LY +M+  GL  
Sbjct: 65  CKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLS- 123

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ + +IL      +NR+         +   G  P++ +YT LI GLC + +  EA + 
Sbjct: 124 PDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRL 183

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
           F+ M + G  P  VT+ TL +GL Q+  +    +L K++  ++  +G
Sbjct: 184 FLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYG 230



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 62/114 (54%), Gaps = 5/114 (4%)

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P + S+N L+G    +N    +  ++N+++ +GL PDL + ++L + LC   +  EA  
Sbjct: 88  IPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALA 147

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLKK-KLDEESITFGS 290
               ++ +G +P  VT+ TL +GL      S+  R + R++K      ++T+G+
Sbjct: 148 AMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGT 201


>gi|255568998|ref|XP_002525469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535282|gb|EEF36959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 581

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 144/274 (52%), Gaps = 25/274 (9%)

Query: 2   YTSLIYGWCK-INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +  ++ GWC  I     A+R   EM +R +  +VV+Y  +++   +  +L+         
Sbjct: 271 FNIVLNGWCNVIGSPREADRIWREMCKRRIHYDVVSYASIISCYSKAGNLY--------- 321

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               K++++M+  GIEPD   ++ V+   ++      +++ +  M+EKGI P   TY+S+
Sbjct: 322 -KVFKLYNQMKEVGIEPDRKIYNSVIFALAKGRHVSEAINLMKTMEEKGIAPNTVTYNSL 380

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +K LC   +I++A  L  EM+++G  P+  TY+ FF+  R  ++      L   M++ G 
Sbjct: 381 IKPLCRARKIDEARGLFDEMLQHGHSPTIRTYHAFFRSLRTGEE---VFALLENMRKLG- 436

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P + +Y +LI  F    + D V ++WN +  +GLGPD  SY +LIHGL    K +EA 
Sbjct: 437 CHPTIDTYIMLIRKFCRWRQFDDVFKLWNQISENGLGPDRSSYIVLIHGLFLNGKLEEAY 496

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTW 274
           +++ +M EK LLP     E          ML+TW
Sbjct: 497 KFYADMKEKQLLPDPKLDE----------MLQTW 520



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 123/265 (46%), Gaps = 16/265 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEP-NVVTYNVLLNGVCRRASLHPSERFEKTI 60
           + SL+   C+   +  AE  +     + V P N  ++N++LNG C             + 
Sbjct: 237 FQSLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSFNIVLNGWCNVIG---------SP 285

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R A++++ EM  R I  DV S++ ++  YS+A          N MKE GI P    Y+SV
Sbjct: 286 READRIWREMCKRRIHYDVVSYASIISCYSKAGNLYKVFKLYNQMKEVGIEPDRKIYNSV 345

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L     + +A  L+  M   G+ P+  TYN   K     +  + A  L+ +M + G 
Sbjct: 346 IFALAKGRHVSEAINLMKTMEEKGIAPNTVTYNSLIKPLCRARKIDEARGLFDEMLQHGH 405

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P + +Y+     F +L   + V  +  +++  G  P +D+Y MLI   C  +++ +  
Sbjct: 406 S-PTIRTYH---AFFRSLRTGEEVFALLENMRKLGCHPTIDTYIMLIRKFCRWRQFDDVF 461

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
           + + ++ E GL P + ++  L  GL
Sbjct: 462 KLWNQISENGLGPDRSSYIVLIHGL 486



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 15/181 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y S+I+   K   +  A   +  M E+G+ PN VTYN L+  +CR           + I
Sbjct: 341 IYNSVIFALAKGRHVSEAINLMKTMEEKGIAPNTVTYNSLIKPLCR----------ARKI 390

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP-QLSLDKLNFMKEKGICPTVATYSS 119
             A  +FDEM   G  P + ++    H + R+ +  +     L  M++ G  PT+ TY  
Sbjct: 391 DEARGLFDEMLQHGHSPTIRTY----HAFFRSLRTGEEVFALLENMRKLGCHPTIDTYIM 446

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +++  C   + +D  +L  ++  NG+ P   +Y               A K Y  MKE  
Sbjct: 447 LIRKFCRWRQFDDVFKLWNQISENGLGPDRSSYIVLIHGLFLNGKLEEAYKFYADMKEKQ 506

Query: 180 L 180
           L
Sbjct: 507 L 507


>gi|357436823|ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477735|gb|AES58938.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 587

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 144/277 (51%), Gaps = 11/277 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  ++ GW +  ++  AER   EM    V P+VVTY  L+ G CR        R EK +
Sbjct: 256 VYNIMLNGWFRARKLKHAERLWEEMKNENVRPSVVTYGTLVEGYCRM------RRVEKAL 309

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               ++  EM   GI+P+   ++ ++   + A + + +L  +       I PT++TY+S+
Sbjct: 310 ----EMVGEMTKEGIKPNAIVYNPIIDALAEAGRFKEALGMMERFHVLQIGPTLSTYNSL 365

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           VK  C  G IE A ++L +M+  G  P   TYN FF+ +      +  M LY +M E G 
Sbjct: 366 VKGFCKAGDIEGASKILKKMISRGFLPIPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGH 425

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  +Y++++ M     ++++  ++  +++  G   DL + TML H LC+  K +EA 
Sbjct: 426 N-PDRLTYHLVLKMLCEEEKLELAVQVSMEMRHKGYDMDLATSTMLTHLLCKMHKLEEAF 484

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
             F +MI +G++PQ +TF+ L   L +  M    R+L
Sbjct: 485 AEFEDMIRRGIIPQYLTFQKLNVELKKQGMNEMARKL 521



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/191 (19%), Positives = 81/191 (42%), Gaps = 30/191 (15%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
            V +F+I++  Y+RA   + ++    F K+K          S+V    S   +   E L+
Sbjct: 177 SVGTFAIIIRRYARAGMHKAAIRTFEFAKDK---------KSIVD---SVSEMSLFEILI 224

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
             + + G    A  Y                  L R+ + D   VP++  YNI++  +  
Sbjct: 225 DSLCKEGSAREASEY------------------LLRRKETDLGWVPSIRVYNIMLNGWFR 266

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
             ++     +W ++K   + P + +Y  L+ G C  ++ ++A +   EM ++G+ P  + 
Sbjct: 267 ARKLKHAERLWEEMKNENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGIKPNAIV 326

Query: 258 FETLYRGLIQS 268
           +  +   L ++
Sbjct: 327 YNPIIDALAEA 337


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 140/264 (53%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI   CK  RI  A+  L  M +RG +P++VTYN L+ G C R ++H          
Sbjct: 268 FNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVH---------- 317

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F+ M  RG+EPDV ++++++  Y +      ++     +  K + PT+A+Y+S++
Sbjct: 318 EARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLI 377

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+ GRI   ++LL EM  +   P   TYN              A+ +   M + G+ 
Sbjct: 378 DGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGV- 436

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN ++  +   N +++ ++I+N +  SGL PD+ +Y +LI+G C+ +   EA  
Sbjct: 437 KPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIV 496

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F EM  K L+P   ++ +L  GL
Sbjct: 497 LFKEMRHKNLIPDIASYNSLIDGL 520



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 144/288 (50%), Gaps = 16/288 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI   CK  RI  A   L  M+++GV+PN+VTYN +++G C R            + 
Sbjct: 408 YNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLR----------NNVN 457

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F+ M   G+EPD+ +++++++ Y +      ++     M+ K + P +A+Y+S++
Sbjct: 458 VAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLI 517

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+ GRI   +ELL EM  +G  P   TYN     +   +  + A+ L+RQ+ E    
Sbjct: 518 DGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEG--I 575

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ ++ + ++       ++ M  +    +   G  P++ +YT+LI+ LC+   + EA  
Sbjct: 576 WPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAML 635

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
              +M +    P  +TFE +   L+Q    R      +KL EE I  G
Sbjct: 636 LLSKMEDNDRPPDAITFEIIIGVLLQ----RNETDKAEKLREEMIARG 679



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 135/264 (51%), Gaps = 11/264 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY++LI G CK   +  A     ++ ERG+  + VTYN L++G C         R+++  
Sbjct: 197 MYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVG------RWQEVT 250

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           +   K+  E     ++PD  +F+I++    +  +   +   L  M ++G  P + TY+++
Sbjct: 251 QLLTKMVRE----NVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNAL 306

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  CS   + +A EL   MV+ G+ P    YN     Y   K  + AM L++++    L
Sbjct: 307 MEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL 366

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VP + SYN LI       R+  V+++ +++ GS   PD+ +Y +LI  LC++ +  EA 
Sbjct: 367 -VPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEAL 425

Query: 241 QYFVEMIEKGLLPQKVTFETLYRG 264
              V M++KG+ P  VT+  +  G
Sbjct: 426 GVLVMMMKKGVKPNIVTYNAMMDG 449



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 139/310 (44%), Gaps = 35/310 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           +T LI  +   +    A   L  +++ G +PN+VT+N ++NG C    +  +  F     
Sbjct: 93  FTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLL 152

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  I+ A  +  EM    ++P++  +S ++    +     
Sbjct: 153 AQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVS 212

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   + + E+GI     TY+S++   CS GR ++  +LL +MVR  V P   T+N   
Sbjct: 213 DALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILI 272

Query: 157 KEY--RGR-KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
                 GR  +A G + +  +  E     P++ +YN L+  + +   +   RE++N +  
Sbjct: 273 DALCKEGRILEAQGVLAMMSKRGEK----PDIVTYNALMEGYCSRENVHEARELFNRMVK 328

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT 273
            GL PD+ +Y +LI G C+ +   EA   F E+  K L+P   ++ +L  GL  S  +  
Sbjct: 329 RGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRI-- 386

Query: 274 WRRLKKKLDE 283
              +KK LDE
Sbjct: 387 -SHVKKLLDE 395



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 11/179 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G C + RI   +  L EM + G  P+V+TYN+LL+  C+      ++ F+K I 
Sbjct: 513 YNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCK------TQPFDKAIS 566

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++     V GI PD  +   ++    +  + +++ D L  +   G  P V TY+ ++
Sbjct: 567 LFRQI-----VEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILI 621

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             LC  G   +A  LL +M  N   P A T+         R + + A KL  +M   GL
Sbjct: 622 NALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARGL 680



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 103/256 (40%), Gaps = 11/256 (4%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           C+   +D A      M+     P    ++ LL  + R    +P+         A  +F +
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGH-YPT---------AISLFTQ 80

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           ++ +GI P + +F+I+++ Y        +   L  + + G  P + T+++++   C  G 
Sbjct: 81  LQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGM 140

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           I  A +    ++  G      TY               A+ L ++M++  +  PN+  Y+
Sbjct: 141 IFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSV-QPNLVMYS 199

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            LI        +     + + +   G+  D  +Y  LI G C   +W+E  Q   +M+ +
Sbjct: 200 ALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRE 259

Query: 250 GLLPQKVTFETLYRGL 265
            + P   TF  L   L
Sbjct: 260 NVDPDDYTFNILIDAL 275



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/162 (19%), Positives = 71/162 (43%), Gaps = 1/162 (0%)

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C    ++DA      MVR    P    ++              A+ L+ Q++  G+  P+
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGIS-PS 89

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + ++ ILI  +   +       +   +  SG  P+L ++  +I+G C      +A  +  
Sbjct: 90  IATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQ 149

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            ++ +G L  + T+ TL  GL ++  ++    L +++++ S+
Sbjct: 150 NLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSV 191


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 146/302 (48%), Gaps = 11/302 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+C+   ++ A    G+M  R ++P+ +TYN L+NG+C+      +ER    I
Sbjct: 373 IYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK------AER----I 422

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            NA+ +  EM+  G+ P V +F+ ++  Y R  Q +     L+ M+E G+ P V +Y S+
Sbjct: 423 TNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSI 482

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V   C  G+I +A  +L +M    V P+A+ YN     Y      + A  L  +MK +G+
Sbjct: 483 VNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGI 542

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +YN+LI      +++    EI N +    L PD  SY  LI   C +    +A 
Sbjct: 543 S-PSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKAL 601

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
                M + G+     T+  L  GL  +  L     L +K+ + ++   +   N   + Y
Sbjct: 602 DLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAY 661

Query: 301 RR 302
            +
Sbjct: 662 SK 663



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 139/342 (40%), Gaps = 65/342 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA-SLHPSERFEKTI 60
           Y  L+ G C+  R+      L EM  + + P+  TY++L +G+ R   S      F K++
Sbjct: 269 YNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSL 328

Query: 61  RN------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +N                        AE+V   +   G+ P    ++ +++ Y +  + +
Sbjct: 329 KNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELE 388

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      MK + I P   TY++++  LC   RI +A++LL EM  NGV P+ ET+N   
Sbjct: 389 GAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLI 448

Query: 157 KEYRGRKDANGAMKLYRQMKEDGL----------------------------------CV 182
             Y           +  +M+E+GL                                   +
Sbjct: 449 DAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVL 508

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN   YN +I  ++     D    +   +K +G+ P + +Y +LI GLC + +  EA + 
Sbjct: 509 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 568

Query: 243 FVEMIEKGLLPQKVTFETL-----YRGLIQSDMLRTWRRLKK 279
              +    L+P  V++ TL     YRG I    L   +R+ K
Sbjct: 569 INSLSNHRLIPDAVSYNTLISACCYRGNIDK-ALDLQQRMHK 609



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 122/260 (46%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G  K   ++       +M+  G++PN +TYNVLL+G+CR      + R  +T  
Sbjct: 234 YNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCR------AGRMGET-- 285

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + DEM  + + PD  ++SI+    SR    +  L       + G+     T S ++
Sbjct: 286 --SALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILL 343

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++  AEE+L  +V  G+ P+   YN     Y    +  GA   + QMK   + 
Sbjct: 344 NGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHI- 402

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN LI       R+   +++  +++ +G+ P ++++  LI       + ++   
Sbjct: 403 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 462

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              EM E GL P  V++ ++
Sbjct: 463 VLSEMQENGLKPNVVSYGSI 482



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 132/304 (43%), Gaps = 19/304 (6%)

Query: 7   YGWCKINRIDMAERFLGEMI--------ERGVEPNVVTYNVLLNGVCRRASLHPSERFEK 58
           + W K  +  +A   LGE +        +    PN  +YNV++ G+ R            
Sbjct: 161 FAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRG-------- 212

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
              +A +VFDEM  R + P+  +++ ++  + +    +      + M   G+ P   TY+
Sbjct: 213 --GDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYN 270

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++  LC  GR+ +   LL EM    + P   TY+  F       D+   + L+ +  ++
Sbjct: 271 VLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKN 330

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+ + + ++ +IL+       ++ +  E+   +  +GL P    Y  LI+G C+  + + 
Sbjct: 331 GVTIGD-YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEG 389

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
           A   F +M  + + P  +T+  L  GL +++ +   + L  ++ +  +    E  N    
Sbjct: 390 AFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLID 449

Query: 299 PYRR 302
            Y R
Sbjct: 450 AYGR 453



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 87/214 (40%), Gaps = 37/214 (17%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P++++ + +++ L S GR  D     G +   G  P    +N   +      D   A+ +
Sbjct: 123 PSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGM 182

Query: 172 YRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWND-------------------- 210
            R+M  DG   PN  SYN++I GM+ A    D V E++++                    
Sbjct: 183 LRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAV-EVFDEMTERAVLPNHITYNTMIDGH 241

Query: 211 VKGS---------------GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
           +KG                GL P+  +Y +L+ GLC   +  E      EM  + ++P  
Sbjct: 242 IKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDG 301

Query: 256 VTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
            T+  L+ GL ++   +    L  K  +  +T G
Sbjct: 302 FTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIG 335



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 45/177 (25%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I  + +    D A   + +M   G+ P++VTYN+L+ G+C ++           I
Sbjct: 513 VYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQ----------I 562

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE++ + +    + PD  S++ ++           +LD    M + GI  TV TY  +
Sbjct: 563 SEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQL 622

Query: 121 VKCLCSCGRIED-----------------------------------AEELLGEMVR 142
           +  L   GR+ +                                   AE+L  EM++
Sbjct: 623 ISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQ 679


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 138/267 (51%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI+G    N+   A   +  M++RG +PN+VTY V++NG+C+R            I 
Sbjct: 193 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD----------ID 242

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + ++M    IE +V  +S V+    +      +L+    M+ KG+ P V TYSS++
Sbjct: 243 LAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLI 302

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLC+  R  DA  LL +M+   + P+  T+N     +        A KLY +M +  + 
Sbjct: 303 SCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSI- 361

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ LI  F   +R+D  + ++  +      P++ +Y  LI+G C+ ++  E  +
Sbjct: 362 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVE 421

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F EM ++GL+   VT+ TL  G  Q+
Sbjct: 422 LFREMSQRGLVGNTVTYTTLIHGFFQA 448



 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 140/283 (49%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI   C   R   A R L +MIER + PNVVT+N L++   +          E  + 
Sbjct: 298 YSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVK----------EGKLV 347

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK++DEM  R I+PD+ ++S +++ +    +   +      M  K   P V TY++++
Sbjct: 348 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 407

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI++  EL  EM + G+  +  TY      +   +D + A  +++QM  DG+ 
Sbjct: 408 NGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVH 467

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN L+       +++    ++  ++ S + P + +Y ++I G+C+  K ++   
Sbjct: 468 -PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 526

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KG+ P  + + T+  G  +  +      L +K+ E+
Sbjct: 527 LFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMRED 569



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 134/292 (45%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSE------- 54
           Y  LI  +C+ ++I +A   LG+M++ G EP++VT + LLNG C    +  +        
Sbjct: 123 YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 182

Query: 55  ---------RFEKTIRN---------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                     F   I           A  + D M  RG +P++ ++ +V++   +     
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDID 242

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           L+ + LN M+   I   V  YS+V+  LC     +DA  L  EM   GV P+  TY+   
Sbjct: 243 LAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLI 302

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                 +  + A +L   M E  +  PN+ ++N LI  F+   ++    ++++++    +
Sbjct: 303 SCLCNYERWSDASRLLSDMIERKIN-PNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSI 361

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            PD+ +Y+ LI+G C   +  EA   F  MI K   P  VT+ TL  G  ++
Sbjct: 362 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKA 413



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 136/300 (45%), Gaps = 18/300 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +  L+    K+ + D+    LGE ++R G+  N+ TYN+L+N  CRR+           I
Sbjct: 88  FNKLLSAIAKMKKFDLVIS-LGEKMQRLGISHNLYTYNILINCFCRRSQ----------I 136

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +  +M   G EP + + S +L+ Y    +   ++  ++ M E G  P   T++++
Sbjct: 137 SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTL 196

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L    +  +A  L+  MV+ G  P+  TY         R D + A  L  +M E   
Sbjct: 197 IHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM-EAAK 255

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              N+  Y+ +I         D    ++ +++  G+ P++ +Y+ LI  LC  ++W +A 
Sbjct: 256 IEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDAS 315

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           +   +MIE+ + P  VTF  L    ++   L    +L     K+ +D +  T+ S    +
Sbjct: 316 RLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 375



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 97/203 (47%), Gaps = 25/203 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           Y+SLI G+C  +R+D A+     MI +   PNVVTYN L+NG C+               
Sbjct: 368 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMS 427

Query: 47  -RASLHPSERFEKTIR---------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            R  +  +  +   I          NA+ VF +M   G+ P++ +++ +L    +  + +
Sbjct: 428 QRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLE 487

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++    +++   + PT+ TY+ +++ +C  G++ED  +L   +   GV P    YN   
Sbjct: 488 KAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMI 547

Query: 157 KEYRGRKDANGAMKLYRQMKEDG 179
             +  +     A  L+R+M+EDG
Sbjct: 548 SGFCRKGLKEEADALFRKMREDG 570



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 10/150 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI+G+ +    D A+    +M+  GV PN++TYN LL+G+C+   L           
Sbjct: 438 YTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLE---------- 487

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  VF+ ++   +EP + +++I++    +A + +   D    +  KG+ P V  Y++++
Sbjct: 488 KAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMI 547

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
              C  G  E+A+ L  +M  +G  P + T
Sbjct: 548 SGFCRKGLKEEADALFRKMREDGPLPDSGT 577



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           +++DA  L G MV++   PS   +N         K  +  + L  +M+  G+   N+++Y
Sbjct: 65  KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGIS-HNLYTY 123

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           NILI  F   +++ +   +   +   G  P + + + L++G C  ++  +A     +M+E
Sbjct: 124 NILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE 183

Query: 249 KGLLPQKVTFETLYRGL 265
            G  P  +TF TL  GL
Sbjct: 184 MGYRPDTITFTTLIHGL 200


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 149/286 (52%), Gaps = 12/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK      A     EM+  G+ P+V+TY  L++ +C+  +++ +  F     
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEF----- 367

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 D+MRVRG+ P+  +++ ++  +S+      +   L  M + G  P+V TY++++
Sbjct: 368 -----LDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALI 422

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++EDA  +L +M   G+ P   +Y+     +    D + A+++ R+M E G+ 
Sbjct: 423 NGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGI- 481

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y+ LI  F    R     +++ ++   GL PD  +YT LI+  C +   ++A Q
Sbjct: 482 KPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQ 541

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL-DEESI 286
              EM+EKG+LP  VT+  L  GL +    R  +RL  KL  EES+
Sbjct: 542 LHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESV 587



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 141/321 (43%), Gaps = 51/321 (15%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           I  AE    EM+E  V PNV TYN+L+ G C          F   I  A  +FD+M  +G
Sbjct: 186 ISFAENVFKEMLESQVSPNVFTYNILIRGFC----------FAGNIDVALTLFDKMETKG 235

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
             P+V +++ ++  Y +  +       L  M  KG+ P + +Y+ V+  LC  GR+++  
Sbjct: 236 CLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVS 295

Query: 135 ELL-----------------------------------GEMVRNGVCPSAETYNCFFKEY 159
            +L                                    EM+R+G+ PS  TY       
Sbjct: 296 FVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSM 355

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
               + N AM+   QM+  GLC PN  +Y  L+  F     M+    +  ++  +G  P 
Sbjct: 356 CKAGNMNRAMEFLDQMRVRGLC-PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPS 414

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWR 275
           + +Y  LI+G C   K ++A     +M EKGL P  V++ T+  G  +S    + LR  R
Sbjct: 415 VVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKR 474

Query: 276 RL-KKKLDEESITFGSEFQNY 295
            + +K +  ++IT+ S  Q +
Sbjct: 475 EMVEKGIKPDTITYSSLIQGF 495



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 141/298 (47%), Gaps = 32/298 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G+ +   ++ A R L EM + G  P+VVTYN L+NG C    +           
Sbjct: 383 YTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKM----------E 432

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  V ++M+ +G+ PDV S+S VL  + R++    +L     M EKGI P   TYSS++
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C   R ++A +L  EM+R G+ P   TY      Y    D   A++L+ +M E G+ 
Sbjct: 493 QGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGV- 551

Query: 182 VPNMHSYNILIGMFMALNRMDMVRE-------------IWNDVKGSGL-----GPDLDSY 223
           +P++ +Y++LI     LN+    RE             + +DV    L       +  S 
Sbjct: 552 LPDVVTYSVLIN---GLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSV 608

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
             LI G C K    EA Q F  M+ K   P    +  +  G  ++  +R    L K++
Sbjct: 609 VSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEM 666



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 131/292 (44%), Gaps = 28/292 (9%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++  + +++ ID A   +      G  P V++YN +L+   R          ++ I  AE
Sbjct: 140 VVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRS---------KRNISFAE 190

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            VF EM    + P+V +++I++  +  A    ++L   + M+ KG  P V TY++++   
Sbjct: 191 NVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGY 250

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C   +I+D  +LL  M   G+ P+  +YN            NG  +  R MKE    +  
Sbjct: 251 CKLRKIDDGFKLLRSMALKGLEPNLISYNVVI---------NGLCREGR-MKEVSFVLTE 300

Query: 185 MH---------SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           M+         +YN LI  +           +  ++   GL P + +YT LIH +C+   
Sbjct: 301 MNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGN 360

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              A ++  +M  +GL P + T+ TL  G  Q   +    R+ +++++   +
Sbjct: 361 MNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFS 412



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 98/223 (43%), Gaps = 41/223 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           YT+LI  +C    ++ A +   EM+E+GV P+VVTY+VL+NG+ +++    ++R      
Sbjct: 523 YTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLF 582

Query: 56  ----------FEKTIRN------------------------AEKVFDEMRVRGIEPDVTS 81
                     +   I N                        A++VF+ M  +  +PD T+
Sbjct: 583 YEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTA 642

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           ++I++H + RA   + +      M + G      T  ++VK L   G++ +   ++  ++
Sbjct: 643 YNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVL 702

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           R+     AE      +      + +  + +  +M +DG  +PN
Sbjct: 703 RSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGF-LPN 744


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 150/303 (49%), Gaps = 27/303 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSE------- 54
           Y +LI G+CK +++D A+R L  M+   + P+VVTYN L+NG+C+   +  +        
Sbjct: 158 YNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKG 217

Query: 55  ----------------RFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLS 98
                           R  + + +A ++ ++M + G +PD+ S++ ++H  +R      +
Sbjct: 218 FSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEA 277

Query: 99  LDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158
           L     +  +G  P V TY+ ++  L    R+ +A EL   +V++G+ P A TY  F   
Sbjct: 278 LKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDG 337

Query: 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218
                    A+ + + M E G CVP++ S+N +I       R+D    + + ++  G  P
Sbjct: 338 LCKAGRVEDALLMLKDMDEKG-CVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSP 396

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
           +  S+  LI G C   KWK+A   F EM+++G+ P  VT+  L  GL ++   R   R+K
Sbjct: 397 NAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKA---RQEGRIK 453

Query: 279 KKL 281
           + +
Sbjct: 454 EAI 456



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 134/267 (50%), Gaps = 14/267 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT  I G CK  R++ A   L +M E+G  P+VV++N ++NG+C+          EK + 
Sbjct: 331 YTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCK----------EKRVD 380

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE +   M  +G  P+  SF+ ++    RA + + ++     M ++G+ PTV TY+ +V
Sbjct: 381 EAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILV 440

Query: 122 KCLCSC---GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
             LC     GRI++A  L   M+  G  P   TY+            + A +L   M+  
Sbjct: 441 DGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAK 500

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G C+PN+++YN LI     L+++D   E++  +   G  PD  +Y  +I  LC+++   +
Sbjct: 501 G-CIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDK 559

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGL 265
           A   F   +E G++P    + +L  GL
Sbjct: 560 ALALFDGSLEAGVVPTSGMYFSLIDGL 586



 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 137/265 (51%), Gaps = 15/265 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L++G+CK+ ++D A +     ++RG  P+VVTYN L+NG C+   L  ++R      
Sbjct: 123 YNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQR------ 176

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +   M    + PDV +++ +++   +  +     +    + +KG  P V TYS+++
Sbjct: 177 ----ILQRMVSESLVPDVVTYNSLVNGLCKNGRVD---EARMLIVDKGFSPNVITYSTLI 229

Query: 122 KCLC-SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             LC    R+E A +LL +MV NG  P   +YN         +  + A+KL+  +   G 
Sbjct: 230 SGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGY 289

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P + +YNILI   +  +R++   E+++ +   GL PD  +YT+ I GLC+  + ++A 
Sbjct: 290 -EPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDAL 348

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
               +M EKG +P  V+   +  GL
Sbjct: 349 LMLKDMDEKGCVPDVVSHNAVINGL 373



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 141/289 (48%), Gaps = 20/289 (6%)

Query: 6   IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEK 65
           I G C+ +RI  A+     M + G  PN +TYN LL+G+C    +           +A+ 
Sbjct: 57  ISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMS----------DAQA 106

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           +++ M   G  PDV +++ +LH + +  +   +L   +   ++G  P V TY++++   C
Sbjct: 107 LYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFC 166

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
              ++++A+ +L  MV   + P   TYN            NG +   R +  D    PN+
Sbjct: 167 KADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLC----KNGRVDEARMLIVDKGFSPNV 222

Query: 186 HSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
            +Y+ LI G+   L R++  R++   +  +G  PD+ SY  LIHGL  +Q   EA + F 
Sbjct: 223 ITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFG 282

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITF 288
            ++ +G  P+  T+  L  GL++ D +     L     K  L+ ++IT+
Sbjct: 283 SVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITY 331



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 143/307 (46%), Gaps = 47/307 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G  +   +  A +  G ++ +G EP V TYN+L++G+ +          E  + 
Sbjct: 261 YNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLK----------EDRVN 310

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F  +   G+EPD  ++++ +    +A + + +L  L  M EKG  P V ++++V+
Sbjct: 311 EAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVI 370

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
             LC   R+++AE LL  M   G  P+A ++N              AM  +++M +    
Sbjct: 371 NGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVK 430

Query: 178 ----------DGLC-----------------------VPNMHSYNILIGMFMALNRMDMV 204
                     DGLC                       VP++ +Y+ LI       ++D  
Sbjct: 431 PTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDA 490

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           R +   ++  G  P++ +Y  LI GLC   K  EA + FV M+EKG +P  +T+ T+   
Sbjct: 491 RRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISA 550

Query: 265 LIQSDML 271
           L + +M+
Sbjct: 551 LCKQEMV 557



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 102/201 (50%), Gaps = 8/201 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G C+  +   A     EM++RGV+P VVTYN+L++G+C+        R E  I+
Sbjct: 401 FNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCK-------ARQEGRIK 453

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +FD M  +G  PDV ++S ++    +A +   +   L  M+ KG  P V TY+S++
Sbjct: 454 EAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLI 513

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   ++++A EL   MV  G  P   TY         ++  + A+ L+    E G+ 
Sbjct: 514 SGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGV- 572

Query: 182 VPNMHSYNILIGMFMALNRMD 202
           VP    Y  LI    A+ R+D
Sbjct: 573 VPTSGMYFSLIDGLCAVARVD 593



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 120/248 (48%), Gaps = 20/248 (8%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
            P+  T  +LL  + +   +  + RF           +++ V+G+  D+++F+I +    
Sbjct: 13  SPDAYTVGILLRSLLKSGKIEKAHRF----------VEQLLVKGL-CDISTFNIYISGLC 61

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
           RA +   +    + M++ G  P   TY++++  LC+ GR+ DA+ L   M++ G  P   
Sbjct: 62  RASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVV 121

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           TYN     +      + A+K++    + G  VP++ +YN LI  F   +++D  + I   
Sbjct: 122 TYNTLLHGFCKVGKLDEALKIFDGAVKRGF-VPDVVTYNALINGFCKADKLDEAQRILQR 180

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           +    L PD+ +Y  L++GLC+  +  EA    V   +KG  P  +T+ TL  GL     
Sbjct: 181 MVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIV---DKGFSPNVITYSTLISGLC---- 233

Query: 271 LRTWRRLK 278
            R  RRL+
Sbjct: 234 -RELRRLE 240



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 2/176 (1%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P   T   +++ L   G+IE A   + +++  G+C    T+N +            A  +
Sbjct: 14  PDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLC-DISTFNIYISGLCRASRIGDAQTV 72

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
           +  M++ G   PN  +YN L+       RM   + ++  +  +G  PD+ +Y  L+HG C
Sbjct: 73  FDGMRKHGFW-PNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFC 131

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +  K  EA + F   +++G +P  VT+  L  G  ++D L   +R+ +++  ES+ 
Sbjct: 132 KVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLV 187



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 10/136 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI G  K  ++D A R LG M  +G  PNV TYN L++G+C              + 
Sbjct: 474 YSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGL----------DKVD 523

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F  M  +G  PD  ++  ++    +      +L   +   E G+ PT   Y S++
Sbjct: 524 EALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLI 583

Query: 122 KCLCSCGRIEDAEELL 137
             LC+  R+++A +LL
Sbjct: 584 DGLCAVARVDEALKLL 599


>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
 gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
          Length = 502

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 148/291 (50%), Gaps = 23/291 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L  GWC++     A   L +M+E G+ P   TYN++L G  R   L          +
Sbjct: 213 YNTLADGWCRVKDTSRALDILRQMVESGIAPTKTTYNIILKGFFRSGQL----------Q 262

Query: 62  NAEKVFDEMRVRG-----IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           +A   F +M+ RG      +PDV S++ VLH    A Q   +    + M  +G  P++AT
Sbjct: 263 HAWDFFLQMKKRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIAT 322

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+++++  C  G +EDA  +  +M+R G  P+  TY    +        + AMKL  +MK
Sbjct: 323 YNALIQVTCKKGNVEDAVAVFDDMIRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMK 382

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV-KGSGLGPDLDSYTMLIHGLCEKQK 235
            +G C PN+ +YN+LIG       ++    ++  + KG    P+ D+Y ++I  +  +++
Sbjct: 383 REG-CEPNVQTYNVLIGYLFEEGDIEKALHLFETMSKGEECLPNQDTYNIIISAMFVRKR 441

Query: 236 WKE---ACQYFVEMIEKGLLPQKVTFETLYRGLI---QSDMLRTWRRLKKK 280
            ++   A +  VEM+++G LP++  F  +  GL+     ++ R   R+++K
Sbjct: 442 AEDMAVAARMVVEMVDRGYLPRRFMFNRVLNGLMLTGNQELSRELLRMQEK 492



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 110/239 (46%), Gaps = 9/239 (3%)

Query: 54  ERFEKTIR---NAEKVFDEM-RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG 109
           ERF  + R   +A + F  + R  G+  D+  F+ +L    ++     +   +  + E+ 
Sbjct: 147 ERFAVSHRRPDHAVRFFLSLHRSHGVAQDLPLFNSLLDALVKSRHAGKAASLVRAL-ERR 205

Query: 110 ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAM 169
             P   TY+++    C       A ++L +MV +G+ P+  TYN   K +        A 
Sbjct: 206 FPPDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPTKTTYNIILKGFFRSGQLQHAW 265

Query: 170 KLYRQMKEDGL----CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
             + QMK+ G     C P++ SY  ++       ++D  R++++++   G  P + +Y  
Sbjct: 266 DFFLQMKKRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATYNA 325

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
           LI   C+K   ++A   F +MI KG +P  VT+  L RGL  +  +    +L  K+  E
Sbjct: 326 LIQVTCKKGNVEDAVAVFDDMIRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKRE 384


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 144/286 (50%), Gaps = 12/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G+C +     A     EM++ G+ PNVVTY  L+N +C+  +L+ +  F     
Sbjct: 311 FNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEF----- 365

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 D+MR RG+ P+  +++ ++  +S+    + +   +  M E G  PT+ TY++++
Sbjct: 366 -----LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALI 420

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR+EDA  LL EM+  G  P   +Y+     +   ++   A +L  +M   G+ 
Sbjct: 421 NGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGIS 480

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ LI       R+  V +++ ++   GL PD  +YT LI+  C +    +A +
Sbjct: 481 -PDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALR 539

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL-IQSDMLRTWRRLKKKLDEESI 286
              EMI+KG  P  VT+  L  G   QS      R L K L EES+
Sbjct: 540 LHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESV 585



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 141/286 (49%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C    ++M   F GEM   G  PNVVTYN +++  C+           + I 
Sbjct: 206 YNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKL----------RKIG 255

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+   M ++G+ P++ S+++V++   R  Q + + + L  M ++   P   T+++++
Sbjct: 256 EAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLI 315

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C+ G    A  L  EMV+NG+ P+  TY           + N AM+   QM++ GL 
Sbjct: 316 NGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLH 375

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +Y  LI  F     +    +I  ++  +G  P + +Y  LI+G C   + ++A  
Sbjct: 376 -PNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASG 434

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              EMIE+G +P  V++ T+  G  ++  L    +LK ++  + I+
Sbjct: 435 LLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGIS 480



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 123/264 (46%), Gaps = 26/264 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+ +   +  A + + EM+E G  P ++TYN L+NG C    +           
Sbjct: 381 YTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRM----------E 430

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  EM  RG  PDV S+S ++  + R  + + +      M  KGI P VATYSS++
Sbjct: 431 DASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLI 490

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC   R+ +  +L  EM+  G+ P   TY      Y    D + A++L+ +M + G  
Sbjct: 491 QGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFS 550

Query: 182 VPNMHSYNILIGMFMALNRMDMVREI---------------WNDVKGSGLGPDLDSYTML 226
            P++ +YN+LI  F   +R    + +               +N +  +    +  S   L
Sbjct: 551 -PDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALAL 609

Query: 227 IHGLCEKQKWKEACQYFVEMIEKG 250
           + G C K    EA +    M++KG
Sbjct: 610 MKGFCMKGLMNEADRVLESMLQKG 633



 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 131/278 (47%), Gaps = 10/278 (3%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
            ++N I+ A   +      G  P V++YN +L+ V R          +++++ AE +F E
Sbjct: 143 ARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRT---------KQSVKIAEGIFKE 193

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           M   G+ P+V +++I++  +  A   ++ L     M+  G  P V TY++++   C   +
Sbjct: 194 MVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRK 253

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           I +A +LL  M   G+ P+  +YN                ++  +M +    VP+  ++N
Sbjct: 254 IGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRY-VPDRVTFN 312

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            LI  +  +        +  ++  +GL P++ +YT LI+ +C+      A ++  +M ++
Sbjct: 313 TLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDR 372

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           GL P   T+ TL  G  Q   L+   ++ K++ E   T
Sbjct: 373 GLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFT 410



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 34/208 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI G CK  R+        EM+  G+ P+ VTY  L+N  C           E  + 
Sbjct: 486 YSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYC----------IEGDLD 535

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVY---SRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A ++ DEM  +G  PD+ +++++++ +   SR  + +  L KL  + E+ + P   TY+
Sbjct: 536 KALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKL--LYEESV-PNEITYN 592

Query: 119 SVV---------------KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163
           +++               K  C  G + +A+ +L  M++ G   + E YN     +    
Sbjct: 593 TLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVG 652

Query: 164 DANGAMKLYRQMKEDGLCVPNMHSYNIL 191
           +   A  LY++M   G   P  HS  I+
Sbjct: 653 NIEKAYNLYKEMLHSGF-AP--HSVTIM 677


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 144/286 (50%), Gaps = 12/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G+C +     A     EM++ G+ PNVVTY  L+N +C+  +L+ +  F     
Sbjct: 311 FNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEF----- 365

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 D+MR RG+ P+  +++ ++  +S+    + +   +  M E G  PT+ TY++++
Sbjct: 366 -----LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALI 420

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR+EDA  LL EM+  G  P   +Y+     +   ++   A +L  +M   G+ 
Sbjct: 421 NGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGIS 480

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ LI       R+  V +++ ++   GL PD  +YT LI+  C +    +A +
Sbjct: 481 -PDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALR 539

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL-IQSDMLRTWRRLKKKLDEESI 286
              EMI+KG  P  VT+  L  G   QS      R L K L EES+
Sbjct: 540 LHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESV 585



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 141/286 (49%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C    ++M   F GEM   G  PNVVTYN +++  C+           + I 
Sbjct: 206 YNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKL----------RKIG 255

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+   M ++G+ P++ S+++V++   R  Q + + + L  M ++   P   T+++++
Sbjct: 256 EAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLI 315

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C+ G    A  L  EMV+NG+ P+  TY           + N AM+   QM++ GL 
Sbjct: 316 NGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLH 375

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +Y  LI  F     +    +I  ++  +G  P + +Y  LI+G C   + ++A  
Sbjct: 376 -PNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASG 434

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              EMIE+G +P  V++ T+  G  ++  L    +LK ++  + I+
Sbjct: 435 LLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGIS 480



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 123/264 (46%), Gaps = 26/264 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+ +   +  A + + EM+E G  P ++TYN L+NG C    +           
Sbjct: 381 YTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRM----------E 430

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  EM  RG  PDV S+S ++  + R  + + +      M  KGI P VATYSS++
Sbjct: 431 DASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLI 490

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC   R+ +  +L  EM+  G+ P   TY      Y    D + A++L+ +M + G  
Sbjct: 491 QGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFS 550

Query: 182 VPNMHSYNILIGMFMALNRMDMVREI---------------WNDVKGSGLGPDLDSYTML 226
            P++ +YN+LI  F   +R    + +               +N +  +    +  S   L
Sbjct: 551 -PDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALAL 609

Query: 227 IHGLCEKQKWKEACQYFVEMIEKG 250
           + G C K    EA +    M++KG
Sbjct: 610 MKGFCMKGLMNEADRVLESMLQKG 633



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 131/278 (47%), Gaps = 10/278 (3%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
            ++N I+ A   +      G  P V++YN +L+ V R          +++++ AE +F E
Sbjct: 143 ARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRT---------KQSVKIAEGIFKE 193

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           M   G+ P+V +++I++  +  A   ++ L     M+  G  P V TY++++   C   +
Sbjct: 194 MVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRK 253

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           I +A +LL  M   G+ P+  +YN                ++  +M +    VP+  ++N
Sbjct: 254 IGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRY-VPDRVTFN 312

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            LI  +  +        +  ++  +GL P++ +YT LI+ +C+      A ++  +M ++
Sbjct: 313 TLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDR 372

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           GL P   T+ TL  G  Q   L+   ++ K++ E   T
Sbjct: 373 GLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFT 410



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 34/208 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI G CK  R+        EM+  G+ P+ VTY  L+N  C           E  + 
Sbjct: 486 YSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYC----------IEGDLD 535

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVY---SRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A ++ DEM  +G  PD+ +++++++ +   SR  + +  L KL  + E+ + P   TY+
Sbjct: 536 KALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKL--LYEESV-PNEITYN 592

Query: 119 SVV---------------KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163
           +++               K  C  G + +A+ +L  M++ G   + E YN     +    
Sbjct: 593 TLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVG 652

Query: 164 DANGAMKLYRQMKEDGLCVPNMHSYNIL 191
           +   A  LY++M   G   P  HS  I+
Sbjct: 653 NIEKAYNLYKEMLHSGF-AP--HSVTIM 677


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 130/251 (51%), Gaps = 11/251 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK   +D A   L EM ++G++ NV  YN ++NG+C+  +          I 
Sbjct: 471 YGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGN----------IE 520

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+  EM V GI+PD  +++ V+  Y R      +   L  M ++G+ PTV T++ ++
Sbjct: 521 QAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLM 580

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +ED + LLG M+  G+ P A TYN   K++  R   N   K+Y++M+  G+ 
Sbjct: 581 NGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVA 640

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ ++YNILI        +     ++ ++   G  P + SY  LI    +K+K  EA +
Sbjct: 641 -PDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARE 699

Query: 242 YFVEMIEKGLL 252
            F EM   GL+
Sbjct: 700 LFEEMRGHGLV 710



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 147/294 (50%), Gaps = 11/294 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI  +CK   +  A     EM++ G+ PN+VTY  L++G+C+   L           
Sbjct: 436 YTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELD---------- 485

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ DEMR +G++ +V  ++ +++   +A   + ++  +  M+  GI P   TY++V+
Sbjct: 486 TANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVI 545

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G I+ A +LL EM+  G+ P+  T+N     +          +L   M E G+ 
Sbjct: 546 DAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGI- 604

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+  +YN L+      N M+   +I+  ++  G+ PD ++Y +LI G C+ +  KEA  
Sbjct: 605 VPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWF 664

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
            + EMIEKG +P   ++  L +   +   +   R L +++    +    E  N+
Sbjct: 665 LYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNF 718



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 148/298 (49%), Gaps = 11/298 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+LI+G+ K+  +  A ++  EM+ + + P+ +TY  L+ G  +             +
Sbjct: 365 VYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGK----------V 414

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              + +F EM  RG++PD  +++ ++ VY +A +   +    N M + G+ P + TY ++
Sbjct: 415 IEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGAL 474

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G ++ A ELL EM + G+  +   YN          +   A+KL ++M+  G+
Sbjct: 475 IDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGI 534

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  +Y  +I  +  L  +D   ++  ++   GL P + ++ +L++G C     ++  
Sbjct: 535 -DPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGD 593

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
           +    M+EKG++P  +T+ TL +     + + T  ++ K++  + +   S   N   K
Sbjct: 594 RLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIK 651



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 138/307 (44%), Gaps = 27/307 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +IY  C++ ++  A R L +M  R   P+VV+Y+ +++G C    L  + +    ++
Sbjct: 261 YNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQ 320

Query: 62  -------------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     AEKV  EM  + I PD   ++ ++H + +    +
Sbjct: 321 IKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVR 380

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    + M  K I P   TY+++++     G++ + + L  EM+  G+ P   TY    
Sbjct: 381 TANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLI 440

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y    +   A  L+ +M + G+  PN+ +Y  LI        +D   E+ ++++  GL
Sbjct: 441 DVYCKAGEMVNAFSLHNEMVQMGM-TPNIVTYGALIDGLCKHGELDTANELLDEMRKKGL 499

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ-SDMLRTWR 275
             ++  Y  +++G+C+    ++A +   EM   G+ P  +T+ T+     +  D+ +  +
Sbjct: 500 QLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHK 559

Query: 276 RLKKKLD 282
            L++ LD
Sbjct: 560 LLQEMLD 566



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 119/257 (46%), Gaps = 14/257 (5%)

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
           E G+  N  +YN+++  +CR             ++ A ++  +M  R   PDV S+S V+
Sbjct: 251 EYGISWNTTSYNIIIYSLCRLGK----------VKEAHRLLMQMDFRSSTPDVVSYSTVI 300

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
             Y    + + +L  ++ M+ KG+ P   TY+S++  LC  G+  +AE++L EM+   + 
Sbjct: 301 DGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKII 360

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P    Y      +        A K + +M    +  P+  +Y  LI  F    ++   + 
Sbjct: 361 PDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKIS-PDYITYTTLIQGFGQGGKVIEPQN 419

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +++++   GL PD  +YT LI   C+  +   A     EM++ G+ P  VT+  L  GL 
Sbjct: 420 LFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLC 479

Query: 267 QSDMLRTWRRLKKKLDE 283
           +   L T   L   LDE
Sbjct: 480 KHGELDTANEL---LDE 493



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 25/179 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           YT++I  +C++  ID A + L EM++RG++P VVT+NVL+NG C    L   +R      
Sbjct: 541 YTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWML 600

Query: 57  ----------------EKTIRNA----EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                           +  IRN+     K++  MR +G+ PD  +++I++  + +A   +
Sbjct: 601 EKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLK 660

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
            +      M EKG  PTV +Y++++K      +I +A EL  EM  +G+    E YN F
Sbjct: 661 EAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFF 719


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 144/293 (49%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+   CK +    A + L EM ++G  P++VTYNV+LNG+C+          E  + 
Sbjct: 204 YTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQ----------EGRVE 253

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A +    +   G EP+  S++IVL     A + + +   +  M  KG  P V T++ ++
Sbjct: 254 DAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLI 313

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +E A E+L +M + G  P++ +YN     +  +K  + AM+    M   G C
Sbjct: 314 SFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRG-C 372

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SYN L+        +D+  E+ + +K  G  P L SY  +I GL +  K KEA +
Sbjct: 373 YPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALE 432

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
              EM  KGL P  +T+ T+  GL + D +    R   K+ +  I   +   N
Sbjct: 433 LLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYN 485



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 131/265 (49%), Gaps = 14/265 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +++ G+C   ++D A R + +M    VEP+  TYN L+ G+C R             
Sbjct: 136 VYNAMVAGYCGAGQLDAARRLVADM---PVEPDAYTYNTLIRGLCGRGR----------T 182

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            NA  V ++M  RG  PDV +++I+L    +    + ++  L+ M +KG  P + TY+ V
Sbjct: 183 SNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVV 242

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  +C  GR+EDA E L  +   G  P+  +YN   K     +    A KL  +M   G 
Sbjct: 243 LNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKG- 301

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN+ ++N+LI        ++   E+   +   G  P+  SY  L+H  C+++K  +A 
Sbjct: 302 CPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAM 361

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
           ++   M+ +G  P  V++ TL   L
Sbjct: 362 EFVELMVSRGCYPDIVSYNTLLTAL 386



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 138/281 (49%), Gaps = 28/281 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  ++ G     R + AE+ + EM  +G  PNVVT+N+L++ +CRR  + P+        
Sbjct: 274 YNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMP 333

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +K I  A +  + M  RG  PD+ S++ +L    R  +  
Sbjct: 334 QYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVD 393

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           ++++ L+ +K+KG  P + +Y++V+  L   G+ ++A ELL EM   G+ P   TY+   
Sbjct: 394 VAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIA 453

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN-ILIGMFMALNRMDMVREIWNDVKGSG 215
                      A++ + ++++ G+  P    YN IL+G+       + + +++  +  SG
Sbjct: 454 SGLCREDRIEEAVRTFCKVQDMGI-RPTAALYNAILLGLCKRRETHNAI-DLFAYMISSG 511

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
             P+  +YT+L+ GL  +   KEA + F ++  +G++ +K+
Sbjct: 512 CMPNESTYTILVEGLAYEGLVKEARELFAQLCSRGVVNKKL 552



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 12/230 (5%)

Query: 48  ASLHPSERFEKTIRNAEKVFDEMRVRGIE-PDVTSFSIVLHVYSRAHQPQLSLDKLN-FM 105
           A++ P     K +  + +  D  RV     PDV  ++ ++  Y  A Q    LD     +
Sbjct: 102 AAVGPCAALIKKLCASGRTADARRVLAASGPDVMVYNAMVAGYCGAGQ----LDAARRLV 157

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
            +  + P   TY+++++ LC  GR  +A  +L +M R G  P   TY    +    R   
Sbjct: 158 ADMPVEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGY 217

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
             AMKL  +M + G C P++ +YN+++       R++   E   ++   G  P+  SY +
Sbjct: 218 KQAMKLLDEMHDKG-CAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNI 276

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY-----RGLIQSDM 270
           ++ GL   ++W++A +   EM  KG  P  VTF  L      RGL++  M
Sbjct: 277 VLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAM 326



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 87/172 (50%), Gaps = 7/172 (4%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P V  Y+++V   C  G+++ A  L+ +M    V P A TYN   +   GR   + A+ +
Sbjct: 132 PDVMVYNAMVAGYCGAGQLDAARRLVADM---PVEPDAYTYNTLIRGLCGRGRTSNALAV 188

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
              M   G C+P++ +Y IL+      +      ++ +++   G  PD+ +Y ++++G+C
Sbjct: 189 LEDMFRRG-CLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGIC 247

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           ++ + ++A ++   +   G  P  V++  + +GL  ++    W   +K ++E
Sbjct: 248 QEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAE---RWEDAEKLMEE 296



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 13/170 (7%)

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           SL  LN      + P  A    ++K LC+ GR  DA  +L         P    YN    
Sbjct: 92  SLAGLNPPSPAAVGPCAA----LIKKLCASGRTADARRVLA-----ASGPDVMVYNAMVA 142

Query: 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
            Y G    + A +L   M  +    P+ ++YN LI       R      +  D+   G  
Sbjct: 143 GYCGAGQLDAARRLVADMPVE----PDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCL 198

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           PD+ +YT+L+   C++  +K+A +   EM +KG  P  VT+  +  G+ Q
Sbjct: 199 PDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQ 248


>gi|357508583|ref|XP_003624580.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499595|gb|AES80798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 152/285 (53%), Gaps = 25/285 (8%)

Query: 2   YTSLIYGWCK-INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +  ++ GWC  I     AER   EM +R ++ +VV+Y  +++   + + L+         
Sbjct: 275 FNIILNGWCNLIVSARNAERIWEEMSKRRIQHDVVSYASIISCYSKSSKLY--------- 325

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               ++F++M+ R I PD   ++ V+   ++    + +++ +  M++  + P   TY+S+
Sbjct: 326 -RVLQLFEQMKKRNITPDRKVYNAVIFSLAKNRMVKEAVNLIIKMEDNNVTPDAITYNSL 384

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +K LC   +I++A+E+   M+  G+ PS  T++ FF+  R +++     +L  +MKE G 
Sbjct: 385 IKPLCKARKIDEAKEIFNVMLERGISPSIRTFHAFFRILRVKEEV---FELLDKMKELG- 440

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P + +Y +LI  F    ++D V+ IWN ++  G+G D  SY +LIHGL    K +EA 
Sbjct: 441 CNPTIETYIMLIRKFCRWRQLDEVKRIWNAMREDGIGHDRSSYIVLIHGLFLNCKVEEAY 500

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           +Y++EM EKG LP+  T            ML+ W   ++  D ++
Sbjct: 501 KYYIEMQEKGFLPEPKT----------ESMLQAWLSGRQVTDSQA 535



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 13/180 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I+   K   +  A   + +M +  V P+ +TYN L+  +C+           + I
Sbjct: 345 VYNAVIFSLAKNRMVKEAVNLIIKMEDNNVTPDAITYNSLIKPLCK----------ARKI 394

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++F+ M  RGI P + +F     +     +    LDK   MKE G  PT+ TY  +
Sbjct: 395 DEAKEIFNVMLERGISPSIRTFHAFFRILRVKEEVFELLDK---MKELGCNPTIETYIML 451

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C   ++++ + +   M  +G+     +Y               A K Y +M+E G 
Sbjct: 452 IRKFCRWRQLDEVKRIWNAMREDGIGHDRSSYIVLIHGLFLNCKVEEAYKYYIEMQEKGF 511


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 149/283 (52%), Gaps = 15/283 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI+G  K            +M E GV PN+ TYN ++N +C+          +   +
Sbjct: 236 YTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCK----------DGRTK 285

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A KVFDEMR RG+  ++ +++ ++    R  +   +   ++ MK   I P + TY++++
Sbjct: 286 DAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLI 345

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              CS G++  A  L  ++   G+ PS  TYN     +  + D +GA K+ ++M+E G+ 
Sbjct: 346 DGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGI- 404

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y ILI  F   + M+   ++ + ++  GL PD+ +Y++LIHG C K +  EA +
Sbjct: 405 KPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASR 464

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD----MLRTWRRLKKK 280
            F  M+EK L P +V + T+  G  +       LR +R +++K
Sbjct: 465 LFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEK 507



 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 136/285 (47%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++   CK  R   A +   EM ERGV  N+VTYN L+ G+CR          E    
Sbjct: 271 YNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCR----------EMKAN 320

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KV D+M+   I P++ +++ ++  +    +   +L     +K +G+ P++ TY+ +V
Sbjct: 321 EANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLV 380

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G    A +++ EM   G+ PS  TY      +    +   A++L   M+E GL 
Sbjct: 381 SGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGL- 439

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++H+Y++LI  F    +M+    ++  +    L P+   Y  +I G C++     A +
Sbjct: 440 VPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALR 499

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F +M EK L P   ++  L R L +   L+    L +K+ +  I
Sbjct: 500 LFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGI 544



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 143/352 (40%), Gaps = 80/352 (22%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  +I  + +   +D +  +  EM+++G  P    +N LL  V   +S +    F    
Sbjct: 96  LYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCF---- 151

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                 F+E +++ +  DV SF IV+     A + + S D L  ++E G  P V  Y+++
Sbjct: 152 ------FNESKIK-VVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTL 204

Query: 121 VKCLCSCGRIEDAEELLGEMVR-----------------------------------NGV 145
           +   C  G IE A++L  EM +                                   +GV
Sbjct: 205 IDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGV 264

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKE--------------DGLC---------- 181
            P+  TYNC   +         A K++ +M+E               GLC          
Sbjct: 265 FPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANK 324

Query: 182 ----------VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
                      PN+ +YN LI  F ++ ++     +  D+K  GL P L +Y +L+ G C
Sbjct: 325 VMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFC 384

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            K     A +   EM E+G+ P KVT+  L     +SD + T  +L+  ++E
Sbjct: 385 RKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEE 436



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 81/147 (55%), Gaps = 10/147 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI  + + + ++ A +    M E G+ P+V TY+VL++G C +  ++ + R      
Sbjct: 411 YTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASR------ 464

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F  M  + +EP+   ++ ++  Y +      +L     M+EK + P VA+YS ++
Sbjct: 465 ----LFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLI 520

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPS 148
           + LC   ++++AE+L+ +M+ +G+ PS
Sbjct: 521 RVLCKERKLKEAEDLVEKMIDSGIDPS 547



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 90/207 (43%), Gaps = 5/207 (2%)

Query: 83  SIVLHVYSRAHQPQL--SLDKLNFMKEKGICPTVA-TYSSVVKCLCSCGRIEDAEELLGE 139
           S++L V S   Q Q   S   L+++ E     T +  Y  ++        ++ +     E
Sbjct: 60  SLLLQVISGKIQSQFFTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSSIYYFNE 119

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
           MV  G  P +  +N       G    N     + + K     V +++S+ I+I       
Sbjct: 120 MVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESKIK--VVLDVYSFGIVIKGCCEAG 177

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
            ++   ++  +++  G  P++  YT LI G C+K + ++A   F EM + GL+  + T+ 
Sbjct: 178 EIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYT 237

Query: 260 TLYRGLIQSDMLRTWRRLKKKLDEESI 286
            L  GL ++ + +    + +K+ E  +
Sbjct: 238 VLIHGLFKNGIKKQGFEMYEKMQEHGV 264



 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 14/92 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I G+CK      A R   +M E+ + PNV +Y+ L+  +C+          E+ +
Sbjct: 480 IYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCK----------ERKL 529

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92
           + AE + ++M   GI+P  T    + ++ SRA
Sbjct: 530 KEAEDLVEKMIDSGIDPSDT----ICNLISRA 557


>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 654

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 146/272 (53%), Gaps = 13/272 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSL+YGWCK  ++  A+  L +M + G+EP++V YN LL G  +   +           
Sbjct: 264 FTSLLYGWCKEGKLMEAKHVLVQMKDMGIEPDIVVYNNLLGGYAQAGKMG---------- 313

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  EMR +  EP+ TS+++++    +  + + +      M+  G    V TYS+++
Sbjct: 314 DAYDLLKEMRRKRCEPNATSYTVLIQSLCKHERLEEATRLFVEMQTNGCQADVVTYSTLI 373

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+I+   ELL EM++ G  P+   Y      +  +++     +L  +M++ G C
Sbjct: 374 SGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMLAHEKKEELEECKELVNEMQKIG-C 432

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YN +I +   L  +    ++WN+++ SGL P +D++ ++I+G  E+    EAC+
Sbjct: 433 APDLSIYNTVIRLACKLGEVKEGIQLWNEMESSGLSPGMDTFVIMINGFLEQGCLVEACE 492

Query: 242 YFVEMIEKGLL--PQKVTFETLYRGLIQSDML 271
           YF EM+ +GL   PQ  T + L   L++++ L
Sbjct: 493 YFKEMVGRGLFTAPQYGTLKELMNSLLRAEKL 524



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 132/266 (49%), Gaps = 12/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI   CK  R++ A R   EM   G + +VVTY+ L++G C+             I+
Sbjct: 334 YTVLIQSLCKHERLEEATRLFVEMQTNGCQADVVTYSTLISGFCKWGK----------IK 383

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++ DEM  +G  P+   +  ++  + +  + +   + +N M++ G  P ++ Y++V+
Sbjct: 384 RGYELLDEMIQQGHFPNQVIYQHIMLAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVI 443

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
           +  C  G +++  +L  EM  +G+ P  +T+      +  +     A + +++M   GL 
Sbjct: 444 RLACKLGEVKEGIQLWNEMESSGLSPGMDTFVIMINGFLEQGCLVEACEYFKEMVGRGLF 503

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS-GLGPDLDSYTMLIHGLCEKQKWKEA 239
             P   +   L+   +   +++M ++ WN +  S G   ++ ++T+ IH L  K   KEA
Sbjct: 504 TAPQYGTLKELMNSLLRAEKLEMAKDAWNCITASKGCQLNVSAWTIWIHALFSKGHVKEA 563

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGL 265
           C + ++M++K L+P   TF  L  GL
Sbjct: 564 CSFCIDMMDKDLMPNPDTFAKLMHGL 589



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 117/260 (45%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I    ++ +       + EM  R   P+++T  V +  + R AS        + + 
Sbjct: 159 YKAMIKVLSRMRQFGAVWALIEEM--RQENPHLITPQVFVILMRRFAS-------ARMVH 209

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V DEM   G EPD   F  +L    +    + +      M+ +   P+V  ++S++
Sbjct: 210 KAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRYRWK-PSVKHFTSLL 268

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++ +A+ +L +M   G+ P    YN     Y        A  L ++M+    C
Sbjct: 269 YGWCKEGKLMEAKHVLVQMKDMGIEPDIVVYNNLLGGYAQAGKMGDAYDLLKEMRRK-RC 327

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  SY +LI       R++    ++ +++ +G   D+ +Y+ LI G C+  K K   +
Sbjct: 328 EPNATSYTVLIQSLCKHERLEEATRLFVEMQTNGCQADVVTYSTLISGFCKWGKIKRGYE 387

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              EMI++G  P +V ++ +
Sbjct: 388 LLDEMIQQGHFPNQVIYQHI 407


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 134/257 (52%), Gaps = 10/257 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G CK+  +  A   +G+ I +G  P++ TYN L++G CR+  L           
Sbjct: 508 YNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLD---------- 557

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++ + M  +G+ PDV +++ +L+   +  + +  ++    M EKG  P + TY++++
Sbjct: 558 SAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTII 617

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC+  ++ +A +LLGEM   G+ P   ++      +    D +GA  L+R M++    
Sbjct: 618 ESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDV 677

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
                +YNI+I  F     M M   +++++K +G  PD  +Y +LI G C+     +  +
Sbjct: 678 SHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYK 737

Query: 242 YFVEMIEKGLLPQKVTF 258
           + +E IEKG +P   TF
Sbjct: 738 FLLENIEKGFIPSLTTF 754



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 141/294 (47%), Gaps = 16/294 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G C+ +R+  AE  L +M+  G EPN  TYN +++G C++            + 
Sbjct: 368 YNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKG----------MVV 417

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  +   +G +PD  ++  +++ + +   P  ++        KG+ P++  Y++++
Sbjct: 418 DANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLI 477

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC  G I  A +L+ EM   G  P   TYN            + A  L       G C
Sbjct: 478 KGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKG-C 536

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +YN L+  +    ++D   E+ N +   G+ PD+ +Y  L++GLC+  K +E  +
Sbjct: 537 IPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVME 596

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGS 290
            F  M EKG  P  +T+ T+   L  S  +     L      K L  + ++FG+
Sbjct: 597 IFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGT 650



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 132/281 (46%), Gaps = 21/281 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G+ +    D A     EM+E  + P+V T+N L++ +C++  +  SER      
Sbjct: 263 YCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESER------ 316

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +FD++  RG+ P++ +F+I +    +      ++  L  +  +G+ P V TY++V+
Sbjct: 317 ----LFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVI 372

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK---DANGAMK--LYRQMK 176
             LC   R+ +AEE L +MV  G  P+  TYN     Y  +    DAN  +K  +++  K
Sbjct: 373 CGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFK 432

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
                 P+  +Y  L+  F      D    ++ D  G GL P +  Y  LI GLC++   
Sbjct: 433 ------PDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLI 486

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
             A Q   EM EKG  P   T+  +  GL +   L     L
Sbjct: 487 LPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHL 527



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 111/249 (44%), Gaps = 11/249 (4%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           +P+V +YN ++N +      +           A KV+  M+ + +E DV +++I +  + 
Sbjct: 187 DPSVYSYNAIMNILVEFGYFN----------QAHKVYMRMKDKKVESDVYTYTIRIKSFC 236

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
           R  +P  +L  L  M   G       Y +VV      G  + A EL  EM+   +CP   
Sbjct: 237 RTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVT 296

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           T+N        +     + +L+ ++ + G+C PN+ ++NI I        +D    +   
Sbjct: 297 TFNKLVHALCKKGFVLESERLFDKVLKRGVC-PNLFTFNIFIQGLCKEGSLDRAVRLLGC 355

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           V   GL PD+ +Y  +I GLC K +  EA +   +M+  G  P   T+ ++  G  +  M
Sbjct: 356 VSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGM 415

Query: 271 LRTWRRLKK 279
           +    R+ K
Sbjct: 416 VVDANRILK 424



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 121/267 (45%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++    +    + A +    M ++ VE +V TY + +   CR    + + R    +R
Sbjct: 193 YNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRL---LR 249

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N       M V G   +  ++  V+  +        + +  + M E  +CP V T++ +V
Sbjct: 250 N-------MPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLV 302

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G + ++E L  ++++ GVCP+  T+N F +        + A++L   +  +GL 
Sbjct: 303 HALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGL- 361

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN +I      +R+    E  + +   G  P+  +Y  +I G C+K    +A +
Sbjct: 362 RPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANR 421

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
              + + KG  P + T+ +L  G  Q 
Sbjct: 422 ILKDAVFKGFKPDEFTYCSLVNGFCQD 448



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 28/182 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           Y ++I   C   +++ A   LGEM  +G+ P+VV++  L+ G C+   L           
Sbjct: 613 YNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGME 672

Query: 51  ------HPSERFEKTI---------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                 H +  +   I         + A ++F EM+  G +PD  ++ +++  + +    
Sbjct: 673 KQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNV 732

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
                 L    EKG  P++ T+  V+ CLC   ++++A  ++  MV+  + P  +T N  
Sbjct: 733 NQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVP--DTVNTI 790

Query: 156 FK 157
           F+
Sbjct: 791 FE 792



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 105/251 (41%), Gaps = 10/251 (3%)

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
           ++G +  + TY  +L  +      +  E     +R+     D   + G+  +   F    
Sbjct: 112 KQGFKHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSN---LDNTLLEGVYVEAMRF---- 164

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
             Y R  + Q ++D    M      P+V +Y++++  L   G    A ++   M    V 
Sbjct: 165 --YGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVE 222

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
               TY    K +        A++L R M   G C  N  +Y  ++  F      D  RE
Sbjct: 223 SDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLG-CFSNAVAYCTVVTGFYEFGDNDRARE 281

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +++++    L PD+ ++  L+H LC+K    E+ + F +++++G+ P   TF    +GL 
Sbjct: 282 LFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLC 341

Query: 267 QSDMLRTWRRL 277
           +   L    RL
Sbjct: 342 KEGSLDRAVRL 352


>gi|255551140|ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544438|gb|EEF45959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 577

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 142/277 (51%), Gaps = 11/277 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  ++ GW +  ++  AER   EM +  V P+VVTY  L+ G CR        R E+ I
Sbjct: 232 IYNIMLNGWFRSRKLKHAERLWLEMKKNNVSPSVVTYGTLVEGYCRM------RRVERAI 285

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               ++ D MR  GIEP+   ++ ++   +   + +     + +  +    PT++TY+S+
Sbjct: 286 ----ELVDVMRKEGIEPNALVYNPIIDALAEEGRFKEVSGMMEYFLQSESGPTISTYNSL 341

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           VK  C       A ++L  M+  G  P+  TYN FF+ +         M LY +M E G 
Sbjct: 342 VKGYCKAKDPVGASKVLKMMISRGFVPTPTTYNYFFRHFSKFGMIEEGMNLYTKMIESGY 401

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  ++++L+ M     R+D+  +I  +++  G   DL + TMLIH  C   +++EA 
Sbjct: 402 -TPDRLTFHLLLKMLCEEERLDLAVQISKEMRSRGCDMDLATSTMLIHLFCRMHRFEEAF 460

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
             F +MI+KG++PQ +TF+ L   L +  M+   R+L
Sbjct: 461 MEFEDMIQKGIVPQYLTFQRLNDELRKRGMVERARKL 497



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 122/279 (43%), Gaps = 48/279 (17%)

Query: 5   LIYGWCKINRIDMAERFLG--EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           L+   CK   + +A+ +    + ++    P+V  YN++LNG  R           + +++
Sbjct: 199 LLDSLCKEGHVRVAKEYFDSRKQLDSCWIPHVRIYNIMLNGWFR----------SRKLKH 248

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           AE+++ EM+   + P V ++  ++  Y R  + + +++ ++ M+++GI P    Y+ ++ 
Sbjct: 249 AERLWLEMKKNNVSPSVVTYGTLVEGYCRMRRVERAIELVDVMRKEGIEPNALVYNPIID 308

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            L   GR ++   ++   +++   P+  TYN   K Y   KD  GA K+ + M   G  V
Sbjct: 309 ALAEEGRFKEVSGMMEYFLQSESGPTISTYNSLVKGYCKAKDPVGASKVLKMMISRGF-V 367

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P   +YN     F   ++  M+ E  N                                 
Sbjct: 368 PTPTTYNYF---FRHFSKFGMIEEGMN--------------------------------L 392

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           + +MIE G  P ++TF  L + L + + L    ++ K++
Sbjct: 393 YTKMIESGYTPDRLTFHLLLKMLCEEERLDLAVQISKEM 431



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 1/176 (0%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P V  Y+ ++       +++ AE L  EM +N V PS  TY    + Y   +    A++L
Sbjct: 228 PHVRIYNIMLNGWFRSRKLKHAERLWLEMKKNNVSPSVVTYGTLVEGYCRMRRVERAIEL 287

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
              M+++G+  PN   YN +I       R   V  +      S  GP + +Y  L+ G C
Sbjct: 288 VDVMRKEGI-EPNALVYNPIIDALAEEGRFKEVSGMMEYFLQSESGPTISTYNSLVKGYC 346

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           + +    A +    MI +G +P   T+   +R   +  M+     L  K+ E   T
Sbjct: 347 KAKDPVGASKVLKMMISRGFVPTPTTYNYFFRHFSKFGMIEEGMNLYTKMIESGYT 402



 Score = 41.6 bits (96), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 34/187 (18%), Positives = 75/187 (40%), Gaps = 31/187 (16%)

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           +F+I++  Y+RA  PQ ++                 Y+  +  +C        E LL  +
Sbjct: 157 TFAILIRRYTRAGMPQSAIRTFE-------------YAISLDFICDYNCDALLEILLDSL 203

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
            + G    A+ Y      +  RK              D   +P++  YNI++  +    +
Sbjct: 204 CKEGHVRVAKEY------FDSRKQL------------DSCWIPHVRIYNIMLNGWFRSRK 245

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           +     +W ++K + + P + +Y  L+ G C  ++ + A +    M ++G+ P  + +  
Sbjct: 246 LKHAERLWLEMKKNNVSPSVVTYGTLVEGYCRMRRVERAIELVDVMRKEGIEPNALVYNP 305

Query: 261 LYRGLIQ 267
           +   L +
Sbjct: 306 IIDALAE 312


>gi|224089100|ref|XP_002308636.1| predicted protein [Populus trichocarpa]
 gi|222854612|gb|EEE92159.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 151/287 (52%), Gaps = 15/287 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L+ GW +  ++  AER   EM ++ V+P+VVTY  L+ G  R        R E+ I
Sbjct: 263 IYNILLNGWFRSRKLKHAERLWLEMKKKNVKPSVVTYGTLVEGYSRM------RRVERAI 316

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN--FMKEKGICPTVATYS 118
               ++ DEM+  GI+ +   ++ ++   + A + +  L  +   F+ E+G  PT++TY+
Sbjct: 317 ----ELVDEMKREGIKSNAIVYNPIIDALAEAGRFKEVLGMMEHFFLCEEG--PTISTYN 370

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           S+VK  C  G +  A ++L  M+   V P+  TYN FF+ +   +     M LY +M E 
Sbjct: 371 SLVKGYCKAGDLVGASKILKMMISREVFPTPTTYNYFFRHFSKCRKIEEGMNLYTKMIES 430

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G   P+  +Y++L+ M     R+D+  +I  +++  G   DL + TM  H LC+ Q+++E
Sbjct: 431 GY-TPDRLTYHLLLKMLCEEERLDLAVQISKEMRARGCDMDLATSTMFTHLLCKMQRFEE 489

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           A   F +M+ +G++PQ +TF  L     +  +    RRL K +   S
Sbjct: 490 AFAEFEDMLRRGIVPQYLTFHRLNDEFRKQGLTELARRLCKLMSSVS 536



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 3/209 (1%)

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC--PTV 114
           E  IR  E       +   E   + F I+L    +    +++ D  +   EK  C  P+V
Sbjct: 202 EAAIRTFEYASSLDLIHNSEAGTSLFEILLDSLCKEGHVRVATDYFDRKVEKDPCWVPSV 261

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
             Y+ ++       +++ AE L  EM +  V PS  TY    + Y   +    A++L  +
Sbjct: 262 RIYNILLNGWFRSRKLKHAERLWLEMKKKNVKPSVVTYGTLVEGYSRMRRVERAIELVDE 321

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           MK +G+   N   YN +I       R   V  +         GP + +Y  L+ G C+  
Sbjct: 322 MKREGI-KSNAIVYNPIIDALAEAGRFKEVLGMMEHFFLCEEGPTISTYNSLVKGYCKAG 380

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYR 263
               A +    MI + + P   T+   +R
Sbjct: 381 DLVGASKILKMMISREVFPTPTTYNYFFR 409



 Score = 40.8 bits (94), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 19/96 (19%), Positives = 47/96 (48%)

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
           R++++D   VP++  YNIL+  +    ++     +W ++K   + P + +Y  L+ G   
Sbjct: 249 RKVEKDPCWVPSVRIYNILLNGWFRSRKLKHAERLWLEMKKKNVKPSVVTYGTLVEGYSR 308

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            ++ + A +   EM  +G+    + +  +   L ++
Sbjct: 309 MRRVERAIELVDEMKREGIKSNAIVYNPIIDALAEA 344


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 142/287 (49%), Gaps = 30/287 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTI 60
           YT+LI G+CK  + D A R   +++ RG  P+VVTY+ L++G+C+   L  + + F + I
Sbjct: 92  YTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMI 151

Query: 61  RN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           ++                         A  + + M   G  PDV +++ +++ + +  + 
Sbjct: 152 KSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARL 211

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             + D LN M  KG+ P V T++S++  LC   R+ DA  +LGEM R    P+  TYN  
Sbjct: 212 DDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTI 271

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y        A K    M E+  C PN+ S+NI+I     +NR     E+  + +   
Sbjct: 272 LDGYCRVNQLEEARKF---MLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRR 328

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-GLLPQKVTFETL 261
             PD+  YT +I  LC ++K  EAC+ + +M+E+ G LP  +T+ T 
Sbjct: 329 CNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYSTF 375



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 122/267 (45%), Gaps = 14/267 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G CK  R   A   L EM+  G  P++ TY  L+ G C+           K   
Sbjct: 57  YNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCK----------SKKSD 106

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSV 120
           +A +VF+++  RG  PDV ++S ++    +  + + ++D    M + G C P   TY+S+
Sbjct: 107 DALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSL 166

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G++++A  LL  M   G  P   TY      +      + A  L  QM   GL
Sbjct: 167 ISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL 226

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+ ++  L+      NR+     I  +++     P + +Y  ++ G C   + +EA 
Sbjct: 227 -TPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEAR 285

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           ++ +E  E    P  V+F  + RGL +
Sbjct: 286 KFMLE--EMDCPPNVVSFNIMIRGLCK 310



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 94/195 (48%)

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           P   +++ ++    +A +   + D L  M   G  P + TY++++   C   + +DA  +
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
             ++V  G  P   TY+C             A+ L+ +M + G C+PN  +YN LI  F 
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 171

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
            + +MD    +   +  +G  PD+ +YT L++G C+  +  +A     +M  KGL P  V
Sbjct: 172 RMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVV 231

Query: 257 TFETLYRGLIQSDML 271
           TF +L  GL + + L
Sbjct: 232 TFTSLMDGLCRENRL 246



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 11/187 (5%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           PT  TY+S++  LC   R  +A +LL EMV +G  P   TY      +   K ++ A+++
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND-VKGSGLGPDLDSYTMLIHGL 230
           + Q+   G   P++ +Y+ LI       R+    +++   +K     P+  +Y  LI G 
Sbjct: 112 FEQLVARGF-RPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGF 170

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ-------SDMLRTWRRLKKKLDE 283
           C   K  EA      M E G  P  VT+ TL  G  +        D+L    R  K L  
Sbjct: 171 CRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTR--KGLTP 228

Query: 284 ESITFGS 290
             +TF S
Sbjct: 229 NVVTFTS 235



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 13/127 (10%)

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            + + GR+    A+       +D   VP   +YN LI       R     ++  ++  SG
Sbjct: 32  LQRWPGRRGCGAAV-------QDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSG 84

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
             PD+ +YT LI G C+ +K  +A + F +++ +G  P  VT+  L  GL +        
Sbjct: 85  CIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEG------ 138

Query: 276 RLKKKLD 282
           RLK+ +D
Sbjct: 139 RLKEAID 145


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 150/286 (52%), Gaps = 21/286 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++++++   CK  +I  A   +  MI RGVEPNVVTYN L++G C           +  +
Sbjct: 281 IFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHC----------LQSEM 330

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNF----MKEKGICPTVAT 116
             A KVFD M   G  P+V S++ +++ Y +  +    +DK  +    M +K + P   T
Sbjct: 331 DEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQR----MDKATYLFEEMCQKELIPNTVT 386

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y++++   C  GR++DA  L  EMV +G  P   TY         +   + AM L + ++
Sbjct: 387 YNTLMH-XCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIE 445

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
              +  P++  Y I+I        ++  R+I++++   GL P++ +YT++I+GLC +   
Sbjct: 446 GSNM-DPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLL 504

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQS-DMLRTWRRLKKKL 281
            EA + F+EM   G  P   T+ T+ +GL+Q+ + LR  + L++ L
Sbjct: 505 DEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEML 550



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 143/306 (46%), Gaps = 27/306 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           +T+LI G C   +I  A     +MI  G +PNVVTY  L+NG+C+  + + + R      
Sbjct: 142 FTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSME 201

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               ++ +  A  +F +M  +GI PD+ +++ ++H      + +
Sbjct: 202 QGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWK 261

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
                LN M    I P V  +S+VV  LC  G+I +A +++  M+  GV P+  TYN   
Sbjct: 262 HVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALM 321

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +  + + + A+K++  M  +G   PN+ SYN LI  +  + RMD    ++ ++    L
Sbjct: 322 DGHCLQSEMDEAVKVFDTMVHNGY-APNVISYNTLINGYCKIQRMDKATYLFEEMCQKEL 380

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  +Y  L+H  C   + ++A   F EM+  G +P   T+  L   L +   L     
Sbjct: 381 IPNTVTYNTLMH-XCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMA 439

Query: 277 LKKKLD 282
           L K ++
Sbjct: 440 LLKTIE 445



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 135/282 (47%), Gaps = 14/282 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI+  C +         L +MI   + P+VV ++ +++ +C+          E  I 
Sbjct: 247 YTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCK----------EGKIT 296

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V D M +RG+EP+V +++ ++  +    +   ++   + M   G  P V +Y++++
Sbjct: 297 EAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLI 356

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE-YRGRKDANGAMKLYRQMKEDGL 180
              C   R++ A  L  EM +  + P+  TYN      + GR     A+ L+ +M   G 
Sbjct: 357 NGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVGR--LQDAIALFHEMVAHGQ 414

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +P++ +Y IL+      + +D    +   ++GS + PD+  YT++I G+C   + + A 
Sbjct: 415 -IPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAAR 473

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
             F  +  KGL P   T+  +  GL +  +L    +L  ++D
Sbjct: 474 DIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMD 515



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 115/253 (45%), Gaps = 11/253 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N +D A      M+     P+ V +N LL  + +           K       + ++M  
Sbjct: 48  NTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAK----------TKQYPTVFSLSNQMDS 97

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
            GI PDV + +I+++ +   ++   +   L  + + G  P  AT++++++ LC  G+I D
Sbjct: 98  FGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGD 157

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A  L  +M+  G  P+  TY           + N A++L R M E G C P++  Y  +I
Sbjct: 158 ALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSM-EQGNCQPDVVVYTSII 216

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                  ++     +++ + G G+ PD+ +YT LIH LC   +WK       +MI   ++
Sbjct: 217 DSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIM 276

Query: 253 PQKVTFETLYRGL 265
           P  V F T+   L
Sbjct: 277 PDVVIFSTVVDAL 289



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 116/251 (46%), Gaps = 20/251 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CKI R+D A     EM ++ + PN VTYN L++  C    L          +
Sbjct: 352 YNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH-XCHVGRL----------Q 400

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +F EM   G  PD+ ++ I+L    +      ++  L  ++   + P +  Y+ V+
Sbjct: 401 DAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVI 460

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G +E A ++   +   G+ P+  TY         R   + A KL+ +M  +G C
Sbjct: 461 DGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNG-C 519

Query: 182 VPNMHSYNILIGMFM----ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            P+  +YN +    +    AL  + +++E+       G   D+ + T+L+  LC+ +  +
Sbjct: 520 SPDGCTYNTITQGLLQNKEALRAIQLLQEML----ARGFSADVSTTTLLVEMLCDDKLDQ 575

Query: 238 EACQYFVEMIE 248
              Q   E ++
Sbjct: 576 SVKQILSEFVQ 586



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 1/154 (0%)

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           ++DA      M+     PS   +N         K       L  QM   G+  P++++ N
Sbjct: 50  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGI-PPDVYTLN 108

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
           ILI  F  LNR+     +   +   G  PD  ++T LI GLC + K  +A   F +MI +
Sbjct: 109 ILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGE 168

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           G  P  VT+ TL  GL +        RL + +++
Sbjct: 169 GFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQ 202



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT +I G C+   ++ A      +  +G+ PNV TY +++NG+CRR  L          
Sbjct: 455 IYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLL---------- 504

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+F EM   G  PD  +++ +     +  +   ++  L  M  +G    V+T + +
Sbjct: 505 DEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLL 564

Query: 121 VKCLCSCGRIEDAEELLGEMVR 142
           V+ LC     +  +++L E V+
Sbjct: 565 VEMLCDDKLDQSVKQILSEFVQ 586


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 134/267 (50%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G C   R D A   L +M+ RG  P+VVTY +LL   C+R+            +
Sbjct: 155 YNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGY----------K 204

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ DEMR +G  PD+ ++++V++   +  +   +++ L  +   G  P   +Y+ V+
Sbjct: 205 QAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVL 264

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC+  R EDAE+L+ EM R G  P+  T+N        R     AM++  Q+ + G C
Sbjct: 265 KGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYG-C 323

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  SYN ++  F    +MD        +  SG  PD+ SY  L+  LC   +   A +
Sbjct: 324 TPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVE 383

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
              ++ +KG  P  +++ T+  GL ++
Sbjct: 384 LLHQLKDKGCTPVLISYNTVIDGLTKA 410



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 135/286 (47%), Gaps = 14/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G+C   ++D A R +  M    +EP+  TYN L+ G+C R              
Sbjct: 123 YNAMVAGYCVTGQLDNARRLVAAM---PMEPDTYTYNTLIRGLCGRGRTD---------- 169

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA  V D+M  RG  PDV +++I+L    +    + ++  L+ M++KG  P + TY+ VV
Sbjct: 170 NALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVV 229

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  GR++DA E L  +   G  P+  +YN   K     +    A KL  +M   G  
Sbjct: 230 NGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGR- 288

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ ++N+LI        ++   EI + +   G  P+  SY  ++H  C+++K   A  
Sbjct: 289 PPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMA 348

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +   M+  G  P  V++ TL   L +   +     L  +L ++  T
Sbjct: 349 FVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCT 394



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 137/266 (51%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++ G C+  R+D A  FL  +   G EPN V+YN++L G+C       +ER+E    
Sbjct: 225 YNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCT------AERWE---- 274

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AEK+  EM  +G  P+V +F++++    R    + +++ L+ + + G  P   +Y+ ++
Sbjct: 275 DAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPIL 334

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   +++ A   +  MV +G  P   +YN          + + A++L  Q+K+ G C
Sbjct: 335 HAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKG-C 393

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + SYN +I       + +   E+ N++   GL PD+ +Y+ +  GLC + + +EA +
Sbjct: 394 TPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIK 453

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
            F ++ + G+ P  V +  +  GL +
Sbjct: 454 AFCKVQDMGIRPNTVLYNAILLGLCK 479



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 138/290 (47%), Gaps = 28/290 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  ++ G C   R + AE+ + EM  +G  PNVVT+N+L++ +CRR  + P+        
Sbjct: 260 YNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIP 319

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +K +  A    + M   G  PD+ S++ +L    R  +  
Sbjct: 320 KYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVD 379

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +++ L+ +K+KG  P + +Y++V+  L   G+ E+A ELL EMV  G+ P   TY+   
Sbjct: 380 AAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTIS 439

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN-ILIGMFMALNRMDMVREIWNDVKGSG 215
                      A+K + ++++ G+  PN   YN IL+G+         + +++  +  +G
Sbjct: 440 SGLCREGRIEEAIKAFCKVQDMGI-RPNTVLYNAILLGLCKRRATHSAI-DLFTYMVSNG 497

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
             P+  +YT+LI GL  +   KEA +   E+  +G++ + +  +   R L
Sbjct: 498 CMPNESTYTILIEGLAYEGLVKEAREMMAELCSRGVVSKTLVNKGAIRLL 547


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 148/283 (52%), Gaps = 15/283 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI+G  K            +M E GV PN+ TYN ++N  C+          +   +
Sbjct: 236 YTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCK----------DGRTK 285

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+FDEMR RG+  ++ +++ ++    R  +   +   ++ MK  GI P + TY++++
Sbjct: 286 DAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLI 345

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++  A  L  ++   G+ PS  TYN     +  + D +GA K+ ++M+E G+ 
Sbjct: 346 DGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGI- 404

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y ILI  F  ++ M+   ++ + ++  GL PD+ +Y++LIHG C K +  EA +
Sbjct: 405 KPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASR 464

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD----MLRTWRRLKKK 280
            F  M+ K L P KV + T+  G  +       LR +R +++K
Sbjct: 465 LFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEK 507



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 138/283 (48%), Gaps = 11/283 (3%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +I G C+   I+ +   L E+ E G  PNVV Y  L++G C+R            I  A+
Sbjct: 169 VIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGE----------IEKAK 218

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +F EM   G+  +  ++++++H   +    +   +    M+E G+ P + TY+ V+   
Sbjct: 219 DLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQH 278

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  GR +DA +L  EM   GV  +  TYN           AN A K+  QMK DG+  PN
Sbjct: 279 CKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGIN-PN 337

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +YN LI  F  + ++     +  D+K  GL P L +Y +L+ G C+K     A +   
Sbjct: 338 LITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVK 397

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           EM E+G+ P K+T+  L     + D +    +L+  ++E  +T
Sbjct: 398 EMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLT 440



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 124/257 (48%), Gaps = 11/257 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++   CK  R   A +   EM ERGV  N+VTYN L+ G+CR          E    
Sbjct: 271 YNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCR----------EMKAN 320

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KV D+M+  GI P++ +++ ++  +    +   +L     +K +G+ P++ TY+ +V
Sbjct: 321 EANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILV 380

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G    A +++ EM   G+ PS  TY      +    +   A++L   M+E GL 
Sbjct: 381 SGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGL- 439

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++H+Y++LI  F    +M+    ++  +    L P+   Y  ++ G C++     A +
Sbjct: 440 TPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALR 499

Query: 242 YFVEMIEKGLLPQKVTF 258
            F EM EK L P   ++
Sbjct: 500 LFREMEEKELPPNVASY 516



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 79/152 (51%), Gaps = 10/152 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI  + +++ ++ A +    M E G+ P+V TY+VL++G C +  ++ + R      
Sbjct: 411 YTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASR------ 464

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F  M  + +EP+   ++ ++  Y +      +L     M+EK + P VA+Y  ++
Sbjct: 465 ----LFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMI 520

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           + LC   + ++AE L+ +M+  G+ PS    N
Sbjct: 521 EVLCKERKSKEAEGLVEKMIDTGIDPSDSILN 552



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 93/208 (44%), Gaps = 7/208 (3%)

Query: 83  SIVLHVYSRAHQPQL--SLDKLNFMKEKGICPTVA-TYSSVVKCLCSCGRIEDAEELLGE 139
           S++L V S   Q Q   S   L+++ E     T +  Y  ++        ++ +     E
Sbjct: 60  SLLLQVISGKIQSQFFTSSSLLHYVTESETSETKSRLYEVMINAYVQSQSLDSSISYFNE 119

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP-NMHSYNILIGMFMAL 198
           MV  G  P +  +N       G    N   + +R   E  + V  +++S+ I+I      
Sbjct: 120 MVDKGFVPGSNCFNNLLTFVVGSSSFN---QWWRFFNESKIKVDLDVYSFGIVIKGCCEA 176

Query: 199 NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
             ++   ++  +++  G  P++  YT LI G C++ + ++A   F EM + GL+  + T+
Sbjct: 177 GEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTY 236

Query: 259 ETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             L  GL ++ + +    + +K+ E+ +
Sbjct: 237 TVLIHGLFKNGIKKQGFEMYEKMQEDGV 264



 Score = 40.4 bits (93), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 10/93 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +++ G+CK      A R   EM E+ + PNV +Y  ++  +C+          E+  
Sbjct: 480 IYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCK----------ERKS 529

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93
           + AE + ++M   GI+P  +  +++    + +H
Sbjct: 530 KEAEGLVEKMIDTGIDPSDSILNLISRAKNDSH 562


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 138/268 (51%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ LI G+CK  ++  A+  L  M+++ V+ +VVTYN L++G C            K + 
Sbjct: 271 FSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYC----------LVKQVN 320

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F+ M  RG+ PDV S+SI+++ + +      ++     M  K I P V TY+S+V
Sbjct: 321 KAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLV 380

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR   A EL+ EM   G   +  TYN            + A+ L  ++KE G+ 
Sbjct: 381 DGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGI- 439

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y +LI     + R+D  ++++ D+   G  P++ +YT LI+G C K  + E   
Sbjct: 440 QPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLA 499

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              +M + G +P  +T+E L   L + D
Sbjct: 500 MLSKMKDNGCIPNAITYEILIHSLFEKD 527



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 141/285 (49%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G C++     A + L  +  + V PNVV Y+ +++ +C+          +K + 
Sbjct: 166 YGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCK----------DKLVN 215

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  ++ EM  + I PDV ++S ++  +    + + ++D  N M    I P V T+S ++
Sbjct: 216 DAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILI 275

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++ +A+ +L  M++  V     TYN     Y   K  N A  L+  M + G+ 
Sbjct: 276 DGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGV- 334

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SY+I+I  F  +  +D   +++ ++    + P++ +Y  L+ GLC+  +   A +
Sbjct: 335 TPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALE 394

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM ++G     +T+ ++   + +++ +     L  K+ E+ I
Sbjct: 395 LVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGI 439



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 136/295 (46%), Gaps = 46/295 (15%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           + ++  I  +     +++++G  P+ VT+ +L+ G+C +  +H +  F           D
Sbjct: 103 FSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFH----------D 152

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
           ++  +G + D  S+  +++   R  + + ++  L  +  K + P V  YS+++  +C   
Sbjct: 153 KVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDK 212

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
            + DA +L  EMV   + P   TY+     +        A+ L+ +M  D +  PN++++
Sbjct: 213 LVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNIN-PNVYTF 271

Query: 189 NILIGMF----------------MALN-RMDMV------------------REIWNDVKG 213
           +ILI  F                M  N ++D+V                  + ++N +  
Sbjct: 272 SILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQ 331

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            G+ PD+ SY+++I+G C+ +   EA + F EM  K + P  VT+ +L  GL +S
Sbjct: 332 RGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKS 386



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 45/214 (21%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I G+CKI  +D A +   EM  + + PNVVTYN L++G+C+               
Sbjct: 341 YSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGR----------TS 390

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ DEM  RG   ++ +++ +L    + +    ++  L  +KEKGI P + TY+ ++
Sbjct: 391 CALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLI 450

Query: 122 KCLCSCGRIEDAEE-----------------------------------LLGEMVRNGVC 146
             LC  GR++DA++                                   +L +M  NG  
Sbjct: 451 NGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCI 510

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           P+A TY         + + + A KL R+M   GL
Sbjct: 511 PNAITYEILIHSLFEKDENDKAEKLLREMIARGL 544



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 106/244 (43%), Gaps = 8/244 (3%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           K  + A  +  +M   GI+PD  + +++++ +S+    + S      + +KG  P   T+
Sbjct: 72  KQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTF 131

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + ++K LC  G +  A     ++V  G      +Y           +   A++L R++  
Sbjct: 132 TILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRV-- 189

Query: 178 DG-LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           DG L  PN+  Y+ +I        ++   +++ ++    + PD+ +Y+ LI G C   K 
Sbjct: 190 DGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKL 249

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGSE 291
           K A   F  MI   + P   TF  L  G  +   +R  +      +KK +  + +T+ S 
Sbjct: 250 KYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSL 309

Query: 292 FQNY 295
              Y
Sbjct: 310 MDGY 313



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 1/141 (0%)

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
           +N   P A  +          K    A+ L +QM+ +G+  P+  + N+L+  F  L  +
Sbjct: 51  KNNPIPPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGI-KPDFITCNLLMNCFSQLGHI 109

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
                ++  +   G  PD  ++T+LI GLC K +  +A  +  +++ +G    +V++ TL
Sbjct: 110 KFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTL 169

Query: 262 YRGLIQSDMLRTWRRLKKKLD 282
             GL +    +   +L +++D
Sbjct: 170 INGLCRVGETKAAVQLLRRVD 190


>gi|356560394|ref|XP_003548477.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Glycine max]
          Length = 612

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 147/261 (56%), Gaps = 15/261 (5%)

Query: 2   YTSLIYGWCK-INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +  ++ GWC  I     AER   EMI+R ++ +VV+Y  +++   + + L+      K +
Sbjct: 302 FNIILNGWCNLIVSTSHAERIWHEMIKRRIQHDVVSYGSIISCYSKSSKLY------KVL 355

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R    +FDEM+ R I PD   ++ V++  ++    + +++ +  M+   + P V TY+S+
Sbjct: 356 R----MFDEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNLIGTMEGNDVTPDVVTYNSL 411

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +K LC   ++++A++L  EM++  + P+ +T++ FF+  R +++     +L  +MKE   
Sbjct: 412 IKPLCKAHKVDEAKQLFDEMLKRHLSPTIQTFHAFFRILRTKEE---VFELLDKMKE-LR 467

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P + +Y +LI  F    ++D V +IW+ ++   +  D  SY +LIHGL    K +EA 
Sbjct: 468 CYPTIETYIMLIRKFCRWCQLDDVFKIWDAMREDEISHDRSSYIVLIHGLFLNGKLEEAQ 527

Query: 241 QYFVEMIEKGLLPQKVTFETL 261
           +Y+ EM EKG LP+  T E L
Sbjct: 528 RYYAEMQEKGFLPEPKTEEML 548



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 13/180 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++IY   K   +  A   +G M    V P+VVTYN L+  +C+             +
Sbjct: 372 VYNAVIYALAKGRLVKEAVNLIGTMEGNDVTPDVVTYNSLIKPLCK----------AHKV 421

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++FDEM  R + P + +F     +     +    LDK   MKE    PT+ TY  +
Sbjct: 422 DEAKQLFDEMLKRHLSPTIQTFHAFFRILRTKEEVFELLDK---MKELRCYPTIETYIML 478

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C   +++D  ++   M  + +     +Y               A + Y +M+E G 
Sbjct: 479 IRKFCRWCQLDDVFKIWDAMREDEISHDRSSYIVLIHGLFLNGKLEEAQRYYAEMQEKGF 538



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 7/136 (5%)

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           AE +  EM++  +     +Y      Y         ++++ +MK+  +  P+   YN +I
Sbjct: 319 AERIWHEMIKRRIQHDVVSYGSIISCYSKSSKLYKVLRMFDEMKKRKI-TPDRKVYNAVI 377

Query: 193 GMFMALNRMDMVREIWN---DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
               AL +  +V+E  N    ++G+ + PD+ +Y  LI  LC+  K  EA Q F EM+++
Sbjct: 378 ---YALAKGRLVKEAVNLIGTMEGNDVTPDVVTYNSLIKPLCKAHKVDEAKQLFDEMLKR 434

Query: 250 GLLPQKVTFETLYRGL 265
            L P   TF   +R L
Sbjct: 435 HLSPTIQTFHAFFRIL 450


>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 547

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 136/265 (51%), Gaps = 10/265 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GW K + +   +    EM   G EP+VVTY +L++  C+      +++++  I 
Sbjct: 264 YTILLEGWGKEHNLLRLDEVYLEMKYDGFEPDVVTYGILISAYCK------AKKYDAAI- 316

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++F EM  +  +P    +  +++      +   +L+     K  G  P   TY+S+V
Sbjct: 317 ---ELFHEMEAKNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLV 373

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI+DA +++ EM ++   P++ TY+         +  N A   +++M  +  C
Sbjct: 374 GAYCWSMRIDDAFQVIDEMRKHSAGPNSRTYDIILHHLIKARRTNEAYFRFQKMSNEPGC 433

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +Y I++ MF   +R+D+ +++W+ +K  G+ P +  Y+ LI  LC K K  EAC+
Sbjct: 434 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHKNKLGEACK 493

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLI 266
           YF EM++ G+ P    F  L + L+
Sbjct: 494 YFQEMLDAGIRPPAKMFSNLKQALL 518



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 125/277 (45%), Gaps = 18/277 (6%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
            +  +++ A      M E G +     +N LL+ +C+           + +  A KVFD+
Sbjct: 202 ARARKVEEAIEAFERMEEFGFKLETSDFNRLLDTLCK----------SRHVEKANKVFDK 251

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNF-MKEKGICPTVATYSSVVKCLCSCG 128
           M+ R   PD+ S++I+L  + + H   L LD++   MK  G  P V TY  ++   C   
Sbjct: 252 MKKRRFVPDIKSYTILLEGWGKEHN-LLRLDEVYLEMKYDGFEPDVVTYGILISAYCKAK 310

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           + + A EL  EM      P+   Y          K  + A++ + + K  G   P   +Y
Sbjct: 311 KYDAAIELFHEMEAKNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGF-TPEAPTY 369

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI- 247
           N L+G +    R+D   ++ ++++    GP+  +Y +++H L + ++  EA   F +M  
Sbjct: 370 NSLVGAYCWSMRIDDAFQVIDEMRKHSAGPNSRTYDIILHHLIKARRTNEAYFRFQKMSN 429

Query: 248 EKGLLPQKVTFETLYRGLIQSDML----RTWRRLKKK 280
           E G  P   T+E + R     D +    + W ++K K
Sbjct: 430 EPGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKAK 466



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 98/227 (43%), Gaps = 13/227 (5%)

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           +G + +  S++ ++    +  Q +L    +N MK + +     T++ + +      ++E+
Sbjct: 151 KGFKYNTESYNALIEALGKIKQFKLIRSLVNEMKSRKLL-NKDTFALISRRHARARKVEE 209

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A E    M   G       +N         +    A K++ +MK+    VP++ SY IL+
Sbjct: 210 AIEAFERMEEFGFKLETSDFNRLLDTLCKSRHVEKANKVFDKMKKRRF-VPDIKSYTILL 268

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
             +   + +  + E++ ++K  G  PD+ +Y +LI   C+ +K+  A + F EM  K   
Sbjct: 269 EGWGKEHNLLRLDEVYLEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKNCK 328

Query: 253 PQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
           P    + TL  GL     L            E++ F   F++  F P
Sbjct: 329 PTPHVYCTLINGLGSEKRL-----------SEALEFFERFKSCGFTP 364


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 137/285 (48%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G CKI     A + L +M E+G +P+VV YN +++ +C+          ++   
Sbjct: 179 YTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCK----------DRRAN 228

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A   F EM  +GI P+V ++S +LH +    Q   +      M  + + P   T++ +V
Sbjct: 229 EAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILV 288

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G I +A  +   M  NGV P A TY+     Y  +   + A KL+  M   G  
Sbjct: 289 DGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGF- 347

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YNILI       R++  + + +++    L PD  +Y+ L+ G C+  + + A +
Sbjct: 348 APSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQK 407

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F EM   GLLP  +T+  L  GL +   L    RL K + E  I
Sbjct: 408 LFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKI 452



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 150/292 (51%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKTI 60
           Y+S+++G+C + +++ A     +MI R V PN VT+ +L++G+C+   +  + R FE   
Sbjct: 249 YSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMT 308

Query: 61  RN------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            N                        A+K+FD M  +G  P V  ++I+++ + ++ +  
Sbjct: 309 ENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLN 368

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L+ M ++ + P   TYS++++  C  GR + A++L  EM   G+ P + TY+   
Sbjct: 369 EAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILL 428

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A +L + M+E  +  P++  YNILI       +++  RE+++++   G+
Sbjct: 429 DGLCKHGHLDEAFRLLKAMQESKI-EPHICIYNILIQGMCNFGKLEAARELFSNLFVKGI 487

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            P + +YT++I GL ++    EAC+ F +M+  G LP   T+    +G +++
Sbjct: 488 QPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRN 539



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 150/327 (45%), Gaps = 51/327 (15%)

Query: 3   TSLIYGWCKINR--IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           T LI   C  NR  +  A   LG+M + G++P  VT+  LLNG+C +A           I
Sbjct: 108 TILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAK----------I 157

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A K+FDE+   G  P + +++ ++    +      +L  L  M+EKG  P V  Y++V
Sbjct: 158 IDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTV 217

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE--- 177
           +  LC   R  +A     EMV  G+ P+  TY+     +      N A  L++QM     
Sbjct: 218 IDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNV 277

Query: 178 -----------DGLCV--------------------PNMHSYNILIGMFMALNRMDMVRE 206
                      DGLC                     P+ ++Y+ L+  +   ++MD  ++
Sbjct: 278 MPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQK 337

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +++ + G G  P +  Y +LI+G C+ ++  EA     EM ++ L P  VT+ TL +G  
Sbjct: 338 LFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFC 397

Query: 267 QSDMLRTWRRLKKK-----LDEESITF 288
           Q+   +  ++L K+     L  +SIT+
Sbjct: 398 QAGRPQVAQKLFKEMCSYGLLPDSITY 424



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 130/280 (46%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I   CK  R + A  F  EM+++G+ PNVVTY+ +L+G C    L+          
Sbjct: 214 YNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLN---------- 263

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F +M  R + P+  +F+I++    +      +      M E G+ P   TYS+++
Sbjct: 264 EATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALM 323

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   ++++A++L   MV  G  PS   YN     +   +  N A  L  +M +  L 
Sbjct: 324 DGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDL- 382

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y+ L+  F    R  + ++++ ++   GL PD  +Y++L+ GLC+     EA +
Sbjct: 383 TPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFR 442

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
               M E  + P    +  L +G+     L   R L   L
Sbjct: 443 LLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNL 482



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 123/257 (47%), Gaps = 13/257 (5%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV--Y 89
           P VV +N LL  + ++          K       +  +M +  I P+V + +I+++   +
Sbjct: 67  PPVVVFNKLLGSLVKK----------KHYSTVISLCKQMDLSNIRPNVYTLTILINCLCH 116

Query: 90  SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
           S       +   L  M + G+ PT  T+ +++  LCS  +I DA +L  E+ + G  PS 
Sbjct: 117 SNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSL 176

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
            TY    K          A++L ++M+E G C P++ +YN +I       R +     ++
Sbjct: 177 ITYTTIIKGLCKIGHTTNALQLLKKMEEKG-CKPDVVAYNTVIDSLCKDRRANEAMYFFS 235

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           ++   G+ P++ +Y+ ++HG C   +  EA   F +MI + ++P  VTF  L  GL +  
Sbjct: 236 EMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEG 295

Query: 270 MLRTWRRLKKKLDEESI 286
           M+   RR+ + + E  +
Sbjct: 296 MILEARRVFEMMTENGV 312



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 112/227 (49%), Gaps = 11/227 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI G CK  R++ A+  L EM +R + P+ VTY+ L+ G C+     P        
Sbjct: 353 VYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAG--RP-------- 402

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A+K+F EM   G+ PD  ++SI+L    +      +   L  M+E  I P +  Y+ +
Sbjct: 403 QVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNIL 462

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++ +C+ G++E A EL   +   G+ PS  TY            +N A +++R+M  +G 
Sbjct: 463 IQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNG- 521

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           C+PN  +YN+ I  F+          +  ++ G G   D  ++ ML+
Sbjct: 522 CLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLL 568



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 121/260 (46%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++L+ G+C  +++D A++    M+ +G  P+V  YN+L+NG C+           + + 
Sbjct: 319 YSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCK----------SRRLN 368

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +  EM  R + PD  ++S ++  + +A +PQ++      M   G+ P   TYS ++
Sbjct: 369 EAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILL 428

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +++A  LL  M  + + P    YN   +          A +L+  +   G+ 
Sbjct: 429 DGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGI- 487

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y ++I   +     +   E++  +  +G  P+  +Y + I G         A +
Sbjct: 488 QPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVR 547

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              EM+ +G      TF+ L
Sbjct: 548 LIEEMVGRGFSADSSTFQML 567



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 25/115 (21%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA-SLHPSERFEKT 59
           +Y  LI G C   +++ A      +  +G++P+VVTY V+++G+ +   S    E F K 
Sbjct: 458 IYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKM 517

Query: 60  I------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           +                         NA ++ +EM  RG   D ++F ++L + S
Sbjct: 518 VVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLDLES 572


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 151/297 (50%), Gaps = 22/297 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++   C   ++  A   L  M++R   P+V+TY +L+   CR          +  + 
Sbjct: 207 YNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCR----------DSGVG 256

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+ DEMR RG  PDV +++++++   +  +   ++  LN M   G  P V T++ ++
Sbjct: 257 HAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIIL 316

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG-AMKLYRQMKEDGL 180
           + +CS GR  DAE+LL +M+R G  PS  T+N     +  RK   G A+ +  +M + G 
Sbjct: 317 RSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILI-NFLCRKGLLGRAIDILEKMPQHG- 374

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN  SYN L+  F    +MD   E    +   G  PD+ +Y  ++  LC+  K ++A 
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAV 434

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK-------KKLDEESITFGS 290
           +   ++  KG  P  +T+ T+  GL ++   +T + +K       K L  ++IT+ S
Sbjct: 435 EILNQLSSKGCSPVLITYNTVIDGLAKAG--KTGKAIKLLDEMRAKDLKPDTITYSS 489



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 134/292 (45%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI- 60
           YT LI   C+ + +  A + L EM +RG  P+VVTYNVL+NG+C+   L  + +F   + 
Sbjct: 242 YTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMP 301

Query: 61  ------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                    +AEK+  +M  +G  P V +F+I+++   R     
Sbjct: 302 SSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLG 361

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++D L  M + G  P   +Y+ ++   C   +++ A E L  MV  G  P   TYN   
Sbjct: 362 RAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTML 421

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      A+++  Q+   G C P + +YN +I       +     ++ ++++   L
Sbjct: 422 TALCKDGKVEDAVEILNQLSSKG-CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDL 480

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            PD  +Y+ L+ GL  + K  EA ++F E    G+ P  VTF ++  GL +S
Sbjct: 481 KPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKS 532



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 137/277 (49%), Gaps = 11/277 (3%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++   C   R   AE+ L +M+ +G  P+VVT+N+L+N +CR+  L            A 
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLG----------RAI 364

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            + ++M   G +P+  S++ +LH + +  +   +++ L  M  +G  P + TY++++  L
Sbjct: 365 DILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTAL 424

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G++EDA E+L ++   G  P   TYN              A+KL  +M+   L  P+
Sbjct: 425 CKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDL-KPD 483

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
             +Y+ L+G      ++D   + +++ +  G+ P+  ++  ++ GLC+ ++   A  + V
Sbjct: 484 TITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLV 543

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            MI +G  P + ++  L  GL    M +    L  +L
Sbjct: 544 FMINRGCKPNETSYTILIEGLAYEGMAKEALELLNEL 580



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 126/252 (50%), Gaps = 14/252 (5%)

Query: 20  RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDV 79
           +FL  M+  G  P+++    L+ G CR           KT R A K+ + +   G  PDV
Sbjct: 123 KFLENMVYHGNVPDIIPCTTLIRGFCR---------LGKT-RKAAKILEILEGSGAVPDV 172

Query: 80  TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
            ++++++  Y +A +   +L  L+ M    + P V TY+++++ LC  G+++ A E+L  
Sbjct: 173 ITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDR 229

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
           M++    P   TY    +          AMKL  +M++ G C P++ +YN+L+       
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRG-CTPDVVTYNVLVNGICKEG 288

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           R+D   +  ND+  SG  P++ ++ +++  +C   +W +A +   +M+ KG  P  VTF 
Sbjct: 289 RLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFN 348

Query: 260 TLYRGLIQSDML 271
            L   L +  +L
Sbjct: 349 ILINFLCRKGLL 360


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 147/299 (49%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI  +CK   +D+AE + G MIE G+   +  YN L+NG C+   L           
Sbjct: 396 YSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSA--------- 446

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE ++ +M   G+EP  T+F+ ++  Y +  Q + +      M EK I P+V T+++++
Sbjct: 447 -AEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALI 505

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LCS   + +A +L  EMV   + P+  TYN   + Y    + + A +L   M  +GL 
Sbjct: 506 YGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGL- 564

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+ ++Y  LI    +  R+   ++  +D+    L  +   Y+ L+HG C + +  EA  
Sbjct: 565 VPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALS 624

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLI-QSDMLRTWRRLKKKLDE----ESITFGSEFQNY 295
              EMI++G+    V    L  G + Q DM R +  LKK  D+    +S+ + S    Y
Sbjct: 625 ASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAY 683



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 133/263 (50%), Gaps = 12/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++L++G+C   R+  A     EMI+RG+  ++V + VL++G  ++  +      ++   
Sbjct: 606 YSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDM------KRLFG 659

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             +K++D+    G+ PD   ++ ++  YS+    + S + L+ M  +   P V TY++ +
Sbjct: 660 LLKKMYDQ----GLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFM 715

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G I+ A  L  +M+   + P++ TY CF        +   A  L+ +M + GL 
Sbjct: 716 NGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLK-GL- 773

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N  +YNILI  F  L R+    ++ +++  +G+ PD  +Y+ +I+  C       A +
Sbjct: 774 LANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVE 833

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            +  M+ KG+ P  V F  L  G
Sbjct: 834 LWDTMLRKGVEPDSVAFNLLIYG 856



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 137/293 (46%), Gaps = 16/293 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G+CK  +++ A +   EM E+ + P+V T+  L+ G+C    +           
Sbjct: 466 FTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEM----------A 515

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+FDEM  R I+P   ++++++  Y +AH    + + L  M   G+ P   TY  ++
Sbjct: 516 EASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLI 575

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LCS GR+  A++ + ++ +  +  +   Y+     Y G+     A+    +M + G+ 
Sbjct: 576 SGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGIN 635

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++  + +LI   M    M  +  +   +   GL PD   YT +I    ++  +K++ +
Sbjct: 636 M-DLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGE 694

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ-SDMLRTWRRLKKKL----DEESITFG 289
               M+ +   P  VT+     GL +  ++ R     +K L       S+T+G
Sbjct: 695 CLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYG 747



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 123/266 (46%), Gaps = 11/266 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           + L+ G  K   ID A   + ++   G  PN+  YN L+N +C+       E  +K    
Sbjct: 327 SGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCK------GEDLDK---- 376

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           AE ++  M    +  +  ++SI++  + +     ++      M E GI  T+  Y+S++ 
Sbjct: 377 AELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLIN 436

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C  G +  AE L  +M+  G+ P+A T+      Y        A KLYR+M E  +  
Sbjct: 437 GHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEI-A 495

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+++++  LI    + N M    ++++++    + P   +Y ++I G C+     +A + 
Sbjct: 496 PSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFEL 555

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQS 268
             +M+  GL+P   T+  L  GL  +
Sbjct: 556 LEDMLHNGLVPDTYTYRPLISGLCST 581



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 116/260 (44%), Gaps = 21/260 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTS+I  + K      +   L  M+     PNVVTY   +NG+C+             I
Sbjct: 675 IYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGE----------I 724

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F++M    I P+  ++   L   ++    + + D L+    KG+    ATY+ +
Sbjct: 725 DRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATD-LHHEMLKGLLANTATYNIL 783

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C  GR+ +A ++L EM  NG+ P   TY+    E+    D   A++L+  M   G+
Sbjct: 784 IRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTMLRKGV 843

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP---------DLDSYTMLIHGLC 231
             P+  ++N+LI        +D   E+ ND+   GL P         DL     L+HG C
Sbjct: 844 -EPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPRQILQLQKRDLGVCNFLMHGGC 902

Query: 232 EKQKWKEACQYFVEMIEKGL 251
              +   A + +  M+ + +
Sbjct: 903 VTGEVDTALRLYHSMLTRAV 922



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 126/279 (45%), Gaps = 26/279 (9%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           W + NR D++               +VTYNVL++G+C+             +  A +V  
Sbjct: 243 WMESNRFDLS---------------IVTYNVLIHGLCKGGG----------VLEALEVRK 277

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
            +R +G++ DV ++  ++  + R  Q    +  +N M E G  PT A  S +V  L   G
Sbjct: 278 SLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKG 337

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
            I+ A +L+ ++ R G  P+   YN         +D + A  LY+ M    L + ++ +Y
Sbjct: 338 NIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDV-TY 396

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           +ILI  F     +D+    +  +   G+   +  Y  LI+G C+      A   + +MI 
Sbjct: 397 SILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMIN 456

Query: 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +GL P   TF TL  G  +   +    +L ++++E+ I 
Sbjct: 457 EGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIA 495



 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 108/271 (39%), Gaps = 8/271 (2%)

Query: 18  AERFLGEMIERGVEPNVVTYNVL-LNGVCRRASLHPSERFEKTIRNAEKVFDEMRV---- 72
           A   L  ++ RG +P  V    L  +  C+ +S    +    +     +VFD + V    
Sbjct: 115 ANSLLHTLLLRGSDPKFVFEKFLESHKQCKFSSTLGFDFLVHSYLQNTRVFDAVVVLRLM 174

Query: 73  --RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
               + P+V + S +L+   R  +  L  +  +     G+ P   T S+V++ LC     
Sbjct: 175 LGNTLLPEVRTLSAILNGLLRIRKFILVWEVFDESVNAGVKPDPYTCSAVIRSLCELKDF 234

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
             A+E +  M  N    S  TYN              A+++ + ++E GL   ++ +Y  
Sbjct: 235 CRAKEKILWMESNRFDLSIVTYNVLIHGLCKGGGVLEALEVRKSLREKGL-KEDVVTYCT 293

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           L+  F  + + D    + N++   G  P   + + L+ GL +K     A    V++   G
Sbjct: 294 LVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFG 353

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            LP    +  L   L + + L     L K +
Sbjct: 354 FLPNLFVYNALINALCKGEDLDKAELLYKNM 384


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 149/277 (53%), Gaps = 11/277 (3%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+  +C+ +++ +A  FLG+MI+ G EP++VT+  LLNG CR   ++          +A 
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVY----------DAL 171

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +FD+M   G +P+V  ++ ++    ++ Q   +LD LN M++ GI P V TY+S++  L
Sbjct: 172 YMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGL 231

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           CS GR  DA  ++  M +  + P   T+N            + A + Y +M    L  P+
Sbjct: 232 CSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSL-DPD 290

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y++LI      +R+D   E++  +   G  PD+ +Y++LI+G C+ +K +   + F 
Sbjct: 291 IVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFC 350

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           EM ++G++   VT+  L +G  ++  L     + +++
Sbjct: 351 EMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRM 387



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 154/314 (49%), Gaps = 32/314 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF---- 56
           +Y ++I G CK  ++D A   L  M + G+ P+VVTYN L++G+C       + R     
Sbjct: 188 IYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCM 247

Query: 57  ---------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH---VYSRA 92
                                E  +  AE+ ++EM  R ++PD+ ++S++++   +YSR 
Sbjct: 248 TKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRL 307

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
            + +   +   FM  KG  P V TYS ++   C   ++E   +L  EM + GV  +  TY
Sbjct: 308 DEAE---EMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTY 364

Query: 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
               + Y      N A +++R+M   G+  PN+ +YN+L+       +++    I  D++
Sbjct: 365 TILIQGYCRAGKLNVAEEIFRRMVFCGV-HPNIITYNVLLHGLCDNGKIEKALVILADMQ 423

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
            +G+  D+ +Y ++I G+C+  +  +A   +  +  +GL+P   T+ T+  GL +  + R
Sbjct: 424 KNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRR 483

Query: 273 TWRRLKKKLDEESI 286
               L +K+ E+ I
Sbjct: 484 EADALFRKMKEDGI 497



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 134/255 (52%), Gaps = 13/255 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI    K  R+  AE F  EMI R ++P++VTY++L+ G+C  + L           
Sbjct: 259 FNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLD---------- 308

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE++F  M  +G  PDV ++SI+++ Y ++ + +  +     M ++G+     TY+ ++
Sbjct: 309 EAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILI 368

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G++  AEE+   MV  GV P+  TYN              A+ +   M+++G+ 
Sbjct: 369 QGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGM- 427

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             ++ +YNI+I GM  A    D   +I+  +   GL PD+ +YT ++ GL +K   +EA 
Sbjct: 428 DADIVTYNIIIRGMCKAGEVAD-AWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREAD 486

Query: 241 QYFVEMIEKGLLPQK 255
             F +M E G+LP +
Sbjct: 487 ALFRKMKEDGILPNE 501



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 146/333 (43%), Gaps = 49/333 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++    +  ++D +      M++    P++  ++ LL+ + +       ++++  I 
Sbjct: 49  YREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKM------KKYDVVIY 102

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               ++++M++ GI  ++ + +I+L+ + R  Q  L+L  L  M + G  P++ T+ S++
Sbjct: 103 ----LWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLL 158

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED--- 178
              C   R+ DA  +  +MV  G  P+   YN         K  + A+ L  +M++D   
Sbjct: 159 NGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIG 218

Query: 179 -----------GLC--------------------VPNMHSYNILIGMFMALNRMDMVREI 207
                      GLC                     P++ ++N LI   +   R+    E 
Sbjct: 219 PDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEF 278

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           + ++    L PD+ +Y++LI+GLC   +  EA + F  M+ KG  P  VT+  L  G  +
Sbjct: 279 YEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCK 338

Query: 268 SDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           S  +    +L     ++ +   ++T+    Q Y
Sbjct: 339 SKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGY 371


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 142/292 (48%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI- 60
           YT LI   CK + +  A + L EM ++G +P+VVTYNVL+NG+C+   L  + RF   + 
Sbjct: 250 YTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMP 309

Query: 61  ------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                    +AEK   EM  +G  P V +F+I+++   R     
Sbjct: 310 SYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIG 369

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++D L  M + G  P   +Y+ ++  LC   ++E A E L  MV  G  P   TYN   
Sbjct: 370 RAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLL 429

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A+++  Q+   G C P + +YN +I     + + D   ++ +++KG GL
Sbjct: 430 TALCKDGKVDVAVEILNQLGSKG-CSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGL 488

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            PD+ +Y+ L+ GL  + K  EA  +F ++ E G+ P  +T+ ++  GL ++
Sbjct: 489 KPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKA 540



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 146/302 (48%), Gaps = 20/302 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++   C   R   AE+FL EMI +G  P+VVT+N+L+N +CR+            I  A 
Sbjct: 323 ILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKG----------LIGRAI 372

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            V ++M   G  P+  S++ +LH   +  + + +++ L+ M  +G  P + TY++++  L
Sbjct: 373 DVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTAL 432

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G+++ A E+L ++   G  P   TYN            + A+KL  +MK  GL  P+
Sbjct: 433 CKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGL-KPD 491

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y+ L+G      ++D     ++D++  G+ P+  +Y  ++ GLC+ ++   A  +  
Sbjct: 492 IITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLA 551

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTW---------RRLKKKLDEESITFGSEFQNY 295
            M+ +G  P + ++  L  GL    + +           R + KK   E +     F  +
Sbjct: 552 YMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVVKKSSAEQVVVKIPFNVF 611

Query: 296 HF 297
           +F
Sbjct: 612 YF 613



 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 148/320 (46%), Gaps = 36/320 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  LI G+CK   I  A + L  M    V P+VVTYN +L  +C    L  +        
Sbjct: 183 YNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQM 239

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  +  A K+ DEMR +G +PDV +++++++   +  +  
Sbjct: 240 QRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLD 299

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++  LN M   G  P V T++ +++ +CS GR  DAE+ L EM+R G  PS  T+N   
Sbjct: 300 EAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILI 359

Query: 157 KEYRGRKDANG-AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
             +  RK   G A+ +  +M + G C PN  SYN L+       +M+   E  + +   G
Sbjct: 360 N-FLCRKGLIGRAIDVLEKMPQHG-CTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRG 417

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDML 271
             PD+ +Y  L+  LC+  K   A +   ++  KG  P  +T+ T+  GL +     D +
Sbjct: 418 CYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAI 477

Query: 272 RTWRRLK-KKLDEESITFGS 290
           +    +K K L  + IT+ +
Sbjct: 478 KLLDEMKGKGLKPDIITYST 497



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 133/271 (49%), Gaps = 14/271 (5%)

Query: 20  RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDV 79
           +FL +M+ RG  P+++    L+ G+C+           KT + A +V + +   G  PDV
Sbjct: 131 KFLEDMVCRGDIPDIIACTSLIRGLCKTG---------KTWK-ATRVMEILEDSGAVPDV 180

Query: 80  TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
            ++++++  Y +  +   +L  L+ M    + P V TY+++++ LC  G++++A E+L  
Sbjct: 181 ITYNVLISGYCKTGEIGSALQLLDRMS---VSPDVVTYNTILRTLCDSGKLKEAMEVLDR 237

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
            ++    P   TY    +          AMKL  +M++ G C P++ +YN+LI       
Sbjct: 238 QMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKG-CKPDVVTYNVLINGICKEG 296

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           R+D      N +   G  P++ ++ +++  +C   +W +A ++  EMI KG  P  VTF 
Sbjct: 297 RLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFN 356

Query: 260 TLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
            L   L +  ++     + +K+ +   T  S
Sbjct: 357 ILINFLCRKGLIGRAIDVLEKMPQHGCTPNS 387


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 148/283 (52%), Gaps = 15/283 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI+G  K            +M E GV PN+ TYN ++N +C+          +   +
Sbjct: 236 YTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCK----------DGRTK 285

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A KVFDEMR RG+  ++ +++ ++    R  +   + + ++ MK  GI P + TY++++
Sbjct: 286 DAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLI 345

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   ++  A  L  ++   G+ PS  TYN     +  + D +GA K+ ++M+E G+ 
Sbjct: 346 DGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGI- 404

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y ILI  F   + M+   ++ + ++  GL PD+ +Y++LIHG C K +  EA +
Sbjct: 405 KPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASR 464

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD----MLRTWRRLKKK 280
            F  M+EK   P +V + T+  G  +       LR +R +++K
Sbjct: 465 LFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEK 507



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 140/283 (49%), Gaps = 11/283 (3%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +I G C+   I+ +   L E+ E G  PNVV Y  L++G C++            I  A+
Sbjct: 169 VIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGE----------IEKAK 218

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +F EM   G+  +  ++++++H   +    +   +    M+E G+ P + TY+ V+  L
Sbjct: 219 DLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQL 278

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  GR +DA ++  EM   GV  +  TYN           AN A ++  QMK DG+  PN
Sbjct: 279 CKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGIN-PN 337

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +YN LI  F  + ++     +  D+K  GL P L +Y +L+ G C+K     A +   
Sbjct: 338 LITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVK 397

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           EM E+G+ P KVT+  L     +SD +    +L+  ++E  +T
Sbjct: 398 EMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLT 440



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 133/285 (46%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++   CK  R   A +   EM ERGV  N+VTYN L+ G+CR          E    
Sbjct: 271 YNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCR----------EMKAN 320

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V D+M+  GI P++ +++ ++  +    +   +L     +K +G+ P++ TY+ +V
Sbjct: 321 EANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILV 380

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G    A +++ EM   G+ PS  TY      +    +   A++L   M+E GL 
Sbjct: 381 SGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGL- 439

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++H+Y++LI  F    RM+    ++  +      P+   Y  ++ G C++     A +
Sbjct: 440 TPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALR 499

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F EM EK L P   ++  +   L +    +    L +K+ +  I
Sbjct: 500 LFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGI 544



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 78/152 (51%), Gaps = 10/152 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI  + + + ++ A +    M E G+ P+V TY+VL++G C +  ++ + R      
Sbjct: 411 YTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASR------ 464

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F  M  +  EP+   ++ ++  Y +      +L     M+EK + P VA+Y  ++
Sbjct: 465 ----LFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMI 520

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           + LC   + ++AE L+ +M+ +G+ PS    N
Sbjct: 521 EVLCKERKSKEAEGLVEKMIDSGIGPSDSILN 552



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 93/217 (42%), Gaps = 10/217 (4%)

Query: 83  SIVLHVYSRAHQPQL--SLDKLNFMKEKGICPTVA-TYSSVVKCLCSCGRIEDAEELLGE 139
           S++L V S   Q Q   S   L+++ E     T +  Y  ++        ++ +     E
Sbjct: 60  SLLLQVISGKIQSQFFTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSSIYYFNE 119

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
           MV  G  P +  +N       G    N     + + K     V +++S+ I+I       
Sbjct: 120 MVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESKIK--VVLDVYSFGIVIKGCCEAG 177

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
            ++   ++  +++  G  P++  YT LI G C+K + ++A   F EM + GL+  + T+ 
Sbjct: 178 EIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYT 237

Query: 260 TLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYH 296
            L  GL ++ + +    + +K+ E  +     F N H
Sbjct: 238 VLIHGLFKNGIKKQGFEMYEKMQEHGV-----FPNLH 269



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 10/94 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +++ G+CK      A R   EM E+ + PNV +Y  ++  +C+          E+  
Sbjct: 480 IYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCK----------ERKS 529

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ 94
           + AE + ++M   GI P  +  +++    + +H 
Sbjct: 530 KEAEGLVEKMIDSGIGPSDSILNLISRAKNDSHS 563


>gi|449444202|ref|XP_004139864.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Cucumis sativus]
 gi|449502917|ref|XP_004161779.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Cucumis sativus]
          Length = 532

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 136/255 (53%), Gaps = 16/255 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++ GWC +  +  A+RF  E+IE   EP++ TY  L+N + ++  L            A 
Sbjct: 271 ILNGWCVLGNVHEAKRFWREIIESKCEPDIYTYGTLINSLTKKGKLG----------TAL 320

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           K+F  M  RG+  DV   + ++       +   +L+    M E+G    VATY++++K L
Sbjct: 321 KLFRAMWERGLTTDVVICNCIIDALCFKKRIPEALEIFKEMNERGCAANVATYNTLIKHL 380

Query: 125 CSCGRIEDAEELLGEMV-RNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
           C   R+E   ELL EM  R G C P++ T+       RG ++      L+++M+  G C 
Sbjct: 381 CKIRRMEKVNELLNEMEERKGSCWPNSVTFIYLLGSVRGPEEVPV---LFQRMERSG-CK 436

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
                YN+++ ++M  +  + V+  WN++K  GLGPD  SYT++IHGL EK + K+  +Y
Sbjct: 437 MTSDIYNLILRLYMDWDIQERVKSTWNEMKEMGLGPDRRSYTIMIHGLYEKGRTKDGLRY 496

Query: 243 FVEMIEKGLLPQKVT 257
           F EM  KG++P+  T
Sbjct: 497 FNEMTLKGIMPEPKT 511



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 111/250 (44%), Gaps = 17/250 (6%)

Query: 21  FLGEMIERGVE-----PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI 75
           F   +++RG       P  V YN +L        L    RFE+     +KV  EM  R  
Sbjct: 143 FFNWVLKRGTNEEKFTPGSVIYNEIL------VILGKFRRFEE----VDKVLVEMSKRKE 192

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
             +  ++S++L+ Y+ AH+ + ++      +E G+   +  + S++  LC    +E AE 
Sbjct: 193 LVNEETYSVLLNRYAAAHKVEEAISIFYRRQEFGLEMNLIAFQSLLMWLCRYKHVEAAET 252

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           L     ++      +T N     +    + + A + +R++ E   C P++++Y  LI   
Sbjct: 253 LFHSK-KHEFVTDIKTSNIILNGWCVLGNVHEAKRFWREIIESK-CEPDIYTYGTLINSL 310

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
               ++    +++  +   GL  D+     +I  LC K++  EA + F EM E+G     
Sbjct: 311 TKKGKLGTALKLFRAMWERGLTTDVVICNCIIDALCFKKRIPEALEIFKEMNERGCAANV 370

Query: 256 VTFETLYRGL 265
            T+ TL + L
Sbjct: 371 ATYNTLIKHL 380



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 111/260 (42%), Gaps = 14/260 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  ++    K  R +  ++ L EM +R    N  TY+VLLN   R A+ H  E      
Sbjct: 163 IYNEILVILGKFRRFEEVDKVLVEMSKRKELVNEETYSVLLN---RYAAAHKVE------ 213

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F   +  G+E ++ +F  +L    R    + + + L   K+      + T + +
Sbjct: 214 -EAISIFYRRQEFGLEMNLIAFQSLLMWLCRYKHVE-AAETLFHSKKHEFVTDIKTSNII 271

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G + +A+    E++ +   P   TY         +     A+KL+R M E GL
Sbjct: 272 LNGWCVLGNVHEAKRFWREIIESKCEPDIYTYGTLINSLTKKGKLGTALKLFRAMWERGL 331

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              ++   N +I       R+    EI+ ++   G   ++ +Y  LI  LC+ ++ ++  
Sbjct: 332 TT-DVVICNCIIDALCFKKRIPEALEIFKEMNERGCAANVATYNTLIKHLCKIRRMEKVN 390

Query: 241 QYFVEMIEK--GLLPQKVTF 258
           +   EM E+     P  VTF
Sbjct: 391 ELLNEMEERKGSCWPNSVTF 410


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 145/290 (50%), Gaps = 28/290 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           YT+L++  CK  + D A+  L EM+ +G  P+ VT++ L++G+C+  S   + R      
Sbjct: 129 YTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVI 188

Query: 56  ----------FEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                     FE  I+           A KV   +  +G  P V  F++V++ + +A   
Sbjct: 189 QRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDL 248

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +   L  M EKG  P V T++ ++  LC   R+ +A++LL +MV  G  P+  TY+  
Sbjct: 249 DSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTV 308

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                 +   + A +L+ Q+ E   C PN+ ++NILI       R++  R++++ ++ +G
Sbjct: 309 INGLCKQGQVDDAYELF-QLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETG 367

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL-LPQKVTFETLYRG 264
             PD+ +Y  LI GLC+  +  EA Q F  + E G+     VT+ TL+ G
Sbjct: 368 CAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHG 417



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 128/269 (47%), Gaps = 10/269 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+  +I G+CK   +D A + L  MIE+G  PNV T+ +L+ G+C+             +
Sbjct: 234 MFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCK----------ANRV 283

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++ ++M + G  P+V ++S V++   +  Q   + +    M+ +   P V T++ +
Sbjct: 284 GEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNIL 343

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   RIE+A +L   M   G  P   TYN            + A +L++ + E G+
Sbjct: 344 IDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGV 403

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              N  +Y+ L   + AL RM     I++ +   G  PDL +YT LI   C+  +  E  
Sbjct: 404 SAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVV 463

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           +   EM  KG  P+  T   +  GL + +
Sbjct: 464 ELVEEMASKGFPPRVNTLSAVLGGLFEGN 492



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 143/285 (50%), Gaps = 15/285 (5%)

Query: 1   MYTSLIYGWCKINRI-DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           ++T+L+ G C   R+ +  E F    + +   P+V+TY  L++ +C+      + +F++ 
Sbjct: 94  VHTTLMKGLCDAGRVVEALEHF--RAMAKDCAPDVMTYTALVHALCK------AGKFDE- 144

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
              A+ +  EM  +G  PD  +FS ++    +    + +   L  + ++G+  + A + +
Sbjct: 145 ---AQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFET 201

Query: 120 VVKCLCS-CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++ LC+    +E A ++LG ++  G  P+   +N     +   KD + A KL   M E 
Sbjct: 202 IIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEK 261

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G CVPN+ ++ ILI      NR+   +++   +   G  P++ +Y+ +I+GLC++ +  +
Sbjct: 262 G-CVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDD 320

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           A + F  M  +   P  VT   L  GL ++  +   R+L  ++ E
Sbjct: 321 AYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRE 365



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 122/263 (46%), Gaps = 14/263 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI  +CK +R       + EM  +G  P V T + +L G      L      E+ I 
Sbjct: 446 YTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGG------LFEGNHTERAI- 498

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA--HQPQLS-LDKLNFMKEKGICPTVATYS 118
              ++FD M  RG   D   +++V+   +RA  H   L+ L+++   +++   P+ +   
Sbjct: 499 ---QLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVD 555

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           ++V+ LC  G+ +DA++LL +M   G   +  +YN         +  + A +++  M   
Sbjct: 556 ALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSA 615

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G   P + + N++I    +  ++D   E+   +   G  PD+++   LI G C+  +   
Sbjct: 616 GP-APEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADL 674

Query: 239 ACQYFVEMIEKGLLPQKVTFETL 261
           A +   EM E GL P   T + L
Sbjct: 675 ARKLLEEMTEAGLEPNDTTHDLL 697



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 136/346 (39%), Gaps = 65/346 (18%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI---- 60
           LI G CK  RI+ A +    M E G  P+++TYN L++G+C+   +  + +  +TI    
Sbjct: 343 LIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESG 402

Query: 61  ----------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLS 98
                                  +A ++F  +  +G  PD+ +++ ++  Y +  +    
Sbjct: 403 VSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEV 462

Query: 99  LDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK- 157
           ++ +  M  KG  P V T S+V+  L      E A +L   M   G    A  YN   + 
Sbjct: 463 VELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEG 522

Query: 158 ------------------EYRGRK--------DA-----------NGAMKLYRQMKEDGL 180
                             + R RK        DA           + A +L  +M E G 
Sbjct: 523 MARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGF 582

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
               + SYN L+     L R D   +++  +  +G  P++ +  ++I  LC   K  +A 
Sbjct: 583 AAA-VSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAY 641

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +    M + G  P   T  TL  G  +S      R+L +++ E  +
Sbjct: 642 ELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGL 687



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 14/194 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIE---RGVEPNVVTYNVLLNGVCRRASLHPSERFE 57
           +Y  ++ G  + ++ D A   L ++I+   R   P+    + L+  +C+           
Sbjct: 515 IYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTD------ 568

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
               +A+++  +M  RG    V+S++ +L   SR  +   +      M   G  P ++T 
Sbjct: 569 ----DAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTV 624

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + V+  LCS  +++DA EL+  M + G CP  ET N     Y     A+ A KL  +M E
Sbjct: 625 NVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTE 684

Query: 178 DGLCVPNMHSYNIL 191
            GL  PN  ++++L
Sbjct: 685 AGL-EPNDTTHDLL 697



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 114/288 (39%), Gaps = 48/288 (16%)

Query: 30  VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89
           V  NV + N  L+ +CR   L+  +      RNA         R   P+  ++ I++  +
Sbjct: 18  VGHNVFSCNCALDMLCR---LNRRQEALALFRNA-------MARICMPNKFTYGILIRGF 67

Query: 90  SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
           S A    +++  L  MK  G       +++++K LC  GR+ +A E    M ++   P  
Sbjct: 68  SSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKD-CAPDV 126

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG----------MFMAL- 198
            TY             + A  + R+M   G C P+  +++ LI            F  L 
Sbjct: 127 MTYTALVHALCKAGKFDEAQGMLREMVAQG-CAPDTVTFSTLIDGLCKFGSEEQAFRVLE 185

Query: 199 -------------------------NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
                                    N +++  ++   V   G  P +  + ++I+G C+ 
Sbjct: 186 DVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKA 245

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +    A +    MIEKG +P   TF  L  GL +++ +   ++L +K+
Sbjct: 246 KDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKM 293


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  137 bits (344), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 144/285 (50%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+   CK  ++  A     +M+ +GV P+VV+YN ++ G C++  +           
Sbjct: 436 YNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMD---------- 485

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  VF EM  +G++P++ ++S+++  Y +    + +    + M+ + I P+  T + ++
Sbjct: 486 SANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIII 545

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  ++++ L ++V+ G  P+  TYNC    +      N A+ +Y +M + G+ 
Sbjct: 546 NGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVS 605

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  LI  F   N MD+  ++ +++K  G+  D+  Y  LI G C K     A Q
Sbjct: 606 -PNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQ 664

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              E+ E GL P KV + ++  G  +   +     L K++  E I
Sbjct: 665 LLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGI 709



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 143/278 (51%), Gaps = 13/278 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +I G CK  R   ++  L ++++ G  P  +TYN +++G  +          E ++ +A 
Sbjct: 544 IINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVK----------EGSVNSAL 593

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            V+ EM   G+ P+V +++ +++ + +++   L+L  ++ MK KGI   V  Y +++   
Sbjct: 594 AVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGF 653

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP- 183
           C  G + +A +LL E+   G+ P+   Y+     +R  ++   A+ L+++M  +G  +P 
Sbjct: 654 CRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEG--IPC 711

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++  Y  LI   +   ++    E++ ++   G+ PDL +Y++LIHGLC K + + A +  
Sbjct: 712 DLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKIL 771

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            +M  K + P    + TL  G  +   L+   RL  ++
Sbjct: 772 EDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEM 809



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 142/320 (44%), Gaps = 44/320 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G C+   +D A     EM+E+G++PN++TY+VL++G  ++              
Sbjct: 471 YNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGD----------TE 520

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++D MR   I P   + +I+++   +A +   S D+L  + ++G  PT  TY+ ++
Sbjct: 521 YAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCII 580

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
                 G +  A  +  EM + GV P+  TY      +    + + A+K+  +MK     
Sbjct: 581 DGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIE 640

Query: 178 ----------DGLC--------------------VPNMHSYNILIGMFMALNRMDMVREI 207
                     DG C                     PN   Y+ +I  F  L  M+    +
Sbjct: 641 LDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHL 700

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +   G+  DL  YT LI GL ++ K   A + + EM+ KG++P  +T+  L  GL  
Sbjct: 701 HKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCN 760

Query: 268 SDMLRTWRRLKKKLDEESIT 287
              L   +++ + +D + +T
Sbjct: 761 KGQLENAQKILEDMDRKCMT 780



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 117/263 (44%), Gaps = 12/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I   CK      A   L EM ++G  P+ V +  ++ GVC +         +  + 
Sbjct: 262 YSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVI-GVCMK---------QGKML 311

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KV  EM   G   +V   + ++  Y +      +L+  + M E GICP   TY+ ++
Sbjct: 312 EAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVII 371

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G ++ A E+  +M    + P+    N   + Y   +    A KL+ +    G  
Sbjct: 372 EWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACG-- 429

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N+ +YN L+       +M     IW  +   G+ P + SY  +I G C++     A  
Sbjct: 430 IANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANG 489

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            FVEM+EKGL P  +T+  L  G
Sbjct: 490 VFVEMLEKGLKPNLITYSVLMDG 512



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 140/292 (47%), Gaps = 27/292 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKT 59
           ++T +I    K  ++  A +  GEM+  G   NVV    L+ G C++  L  + E F+K 
Sbjct: 296 IFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKM 355

Query: 60  IRN------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
             N                        A +++++M+ + I P V + + ++  Y +A  P
Sbjct: 356 NENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSP 415

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + +    +     GI   V TY+S++  LC  G++ +A  +  +MVR GV PS  +YN  
Sbjct: 416 EEASKLFDEAVACGIA-NVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNM 474

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +  + D + A  ++ +M E GL  PN+ +Y++L+  +      +    +++ ++G  
Sbjct: 475 ILGHCQQGDMDSANGVFVEMLEKGL-KPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGEN 533

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           + P   +  ++I+GLC+  +  E+     +++++G +P  +T+  +  G ++
Sbjct: 534 IAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVK 585



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 126/291 (43%), Gaps = 45/291 (15%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           K N I  A     +M  +GV+ +  T +V++     RAS+      E  +  AE  F E 
Sbjct: 201 KNNMIREARDVYNKMASKGVKGDCATISVMI-----RASMR-----EGKLEEAEGWFREA 250

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
           + +G+E D  ++SIV+    +      +L  L  M++KG  P    ++ V+      G++
Sbjct: 251 KNKGVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKM 310

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
            +A ++ GEM+  G   +        K Y  + D + A++L+ +M E+G+C PN  +Y +
Sbjct: 311 LEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGIC-PNNVTYAV 369

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG--------------------- 229
           +I        MD   EI+N +K   + P + +   LI G                     
Sbjct: 370 IIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACG 429

Query: 230 -------------LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
                        LC++ K  EAC  + +M+ KG+ P  V++  +  G  Q
Sbjct: 430 IANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQ 480



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 60/212 (28%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR-------------- 47
           YT+LI G+CK N +D+A + + EM  +G+E +V  Y  L++G CR+              
Sbjct: 611 YTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQ 670

Query: 48  -------------------------ASLHPSERF---------------------EKTIR 61
                                    A+LH  +R                      E  + 
Sbjct: 671 EVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLL 730

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +++ EM  +GI PD+ ++S+++H      Q + +   L  M  K + PTV  Y++++
Sbjct: 731 FASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLI 790

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
                 G +++A  L  EM+  G+ P   TY+
Sbjct: 791 TGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYD 822



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 95/204 (46%), Gaps = 1/204 (0%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           K I +A   F+ +  + I P +T  +I L    + +  + + D  N M  KG+    AT 
Sbjct: 168 KRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREARDVYNKMASKGVKGDCATI 227

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           S +++     G++E+AE    E    GV   A  Y+   +    + D+  A+ L R+M++
Sbjct: 228 SVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLREMRD 287

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G  VP+   +  +IG+ M   +M    ++  ++   G   ++   T L+ G C++    
Sbjct: 288 KGW-VPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLD 346

Query: 238 EACQYFVEMIEKGLLPQKVTFETL 261
            A + F +M E G+ P  VT+  +
Sbjct: 347 SALELFDKMNENGICPNNVTYAVI 370


>gi|326525088|dbj|BAK07814.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 539

 Score =  137 bits (344), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 143/280 (51%), Gaps = 14/280 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+L++ WC+   +D AE+   EM + G+ PNV TY  +++ + R             +
Sbjct: 246 LYTTLVHAWCRAGCLDKAEQVFAEMQQAGIMPNVYTYTSVIDAMYRAGQ----------V 295

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++  +M   G  P+  +F+ ++  + +A + +  L   N M++ G  P + TY+ +
Sbjct: 296 PRAQELLCQMMETGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFL 355

Query: 121 VKCLCSCGR--IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           ++  C  G+  ++ A ++L +M+  G  P   T+N   K   G  +   A +LY +M+E 
Sbjct: 356 METHCGKGQSNLDAAMKVLAKMIAKGCIPDCHTFNPMLKLVLGTGNVEAARRLYERMQEL 415

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
             C PN+ +YN+L+ +F     MDMV  I  D+   G+ P++++Y  LI   C +  W+ 
Sbjct: 416 Q-CKPNVVTYNLLMKLFNKEKSMDMVLRIKKDMDAQGVEPNVNTYGALIESFCGRGNWRR 474

Query: 239 ACQYFVEMI-EKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A     EM+ EK L P K  ++ +   L ++  LR    L
Sbjct: 475 AHATLREMVEEKSLKPTKPVYDMVLMLLRKAGQLRKHEEL 514



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 102/258 (39%), Gaps = 38/258 (14%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRA--------------------HQPQLSLDKL 102
           A  + DEMR R I         ++  Y RA                      P +    L
Sbjct: 158 ARHLLDEMRERSIPVSSQVILAIIRRYVRAGMSPEASELFRRMEEYGAGVPDPAVLASLL 217

Query: 103 NFMKEKGIC---------------PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
             + +K +                P V  Y+++V   C  G ++ AE++  EM + G+ P
Sbjct: 218 GALSKKRLAGEAQALFDSYKSVFPPDVVLYTTLVHAWCRAGCLDKAEQVFAEMQQAGIMP 277

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
           +  TY               A +L  QM E G C PN  ++N ++   +   R + V ++
Sbjct: 278 NVYTYTSVIDAMYRAGQVPRAQELLCQMMETG-CPPNTATFNAIMRAHVKAGRSEQVLQV 336

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEK--QKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            N ++  G  PD+ +Y  L+   C K       A +   +MI KG +P   TF  + + +
Sbjct: 337 HNQMRQLGCDPDIITYNFLMETHCGKGQSNLDAAMKVLAKMIAKGCIPDCHTFNPMLKLV 396

Query: 266 IQSDMLRTWRRLKKKLDE 283
           + +  +   RRL +++ E
Sbjct: 397 LGTGNVEAARRLYERMQE 414



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 5/154 (3%)

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
           A Y++++  L        A  LL EM    +  S++      + Y     +  A +L+R+
Sbjct: 140 ALYAAMIDLLAKHHHFPLARHLLDEMRERSIPVSSQVILAIIRRYVRAGMSPEASELFRR 199

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M+E G  VP+      L+G  ++  R+    +   D   S   PD+  YT L+H  C   
Sbjct: 200 MEEYGAGVPDPAVLASLLGA-LSKKRLAGEAQALFDSYKSVFPPDVVLYTTLVHAWCRAG 258

Query: 235 KWKEACQYFVEMIEKGLLPQKVTF----ETLYRG 264
              +A Q F EM + G++P   T+    + +YR 
Sbjct: 259 CLDKAEQVFAEMQQAGIMPNVYTYTSVIDAMYRA 292



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 21/136 (15%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           ++ A R    M E   +PNVVTYN+L+    +          EK++    ++  +M  +G
Sbjct: 402 VEAARRLYERMQELQCKPNVVTYNLLMKLFNK----------EKSMDMVLRIKKDMDAQG 451

Query: 75  IEPDVTSFSIVLHVY------SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
           +EP+V ++  ++  +       RAH    +L ++  ++EK + PT   Y  V+  L   G
Sbjct: 452 VEPNVNTYGALIESFCGRGNWRRAHA---TLREM--VEEKSLKPTKPVYDMVLMLLRKAG 506

Query: 129 RIEDAEELLGEMVRNG 144
           ++   EEL+  M   G
Sbjct: 507 QLRKHEELVELMADRG 522


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  137 bits (344), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 146/334 (43%), Gaps = 48/334 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+  I G CK  +I  A     EM E+G  P+  TYN+L+NG+C+ A L           
Sbjct: 94  YSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLE---------- 143

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + DEM+ RG  P V +++ ++H +  A +   ++D L+ M+ +GI P   TY++++
Sbjct: 144 MGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALI 203

Query: 122 KCLCSCGRIEDAEELLGEMVRNG--VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           + LC CG +E A  +L EM   G   CP+  TY         +      M+   +M   G
Sbjct: 204 QGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISG 263

Query: 180 LCVPNMHSYNILI------GMFMA----LNRM-------------------------DMV 204
            C PN  +Y  LI      G F+     LN M                         D  
Sbjct: 264 -CFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFA 322

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           RE+   +   G+ PD+ +YT LI GLC+     EA     EM  KG++P  VT+ TL  G
Sbjct: 323 REMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLING 382

Query: 265 LIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
             Q+D      +L  ++    +    +     FK
Sbjct: 383 FTQADRTDHALQLVNEMKSNGLMPAGDIYKILFK 416



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 127/266 (47%), Gaps = 13/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI+G+C   R+D A   L EM  RG+ PN VTY  L+ G+C              + 
Sbjct: 164 YTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGE----------VE 213

Query: 62  NAEKVFDEMRVRGIE--PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
            A  V  EM++RG E  P+V +++ ++H   +    ++ ++ L+ M   G  P  ATY++
Sbjct: 214 RAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTA 273

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC  G   +A  LL EMV  G       YN          + + A ++   M E G
Sbjct: 274 LIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKG 333

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  P++ +Y  LI        +D    +  +++  G+ P+  +YT LI+G  +  +   A
Sbjct: 334 V-APDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHA 392

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGL 265
            Q   EM   GL+P    ++ L++ L
Sbjct: 393 LQLVNEMKSNGLMPAGDIYKILFKSL 418



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 131/258 (50%), Gaps = 11/258 (4%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           + +V++Y+  +NG+C++            I  A ++F EM  +G  PD  +++I+++   
Sbjct: 88  DTDVISYSRKINGLCKKGQ----------IAEAMEIFREMEEKGSAPDSFTYNILINGLC 137

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
           +  Q ++ +  ++ M+ +G  PTV TY++++   C+ GR++ A ++L EM   G+ P+  
Sbjct: 138 KDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTV 197

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDG-LCVPNMHSYNILIGMFMALNRMDMVREIWN 209
           TY    +      +   A+ + ++MK  G  C PN+ +Y  LI         +M  E  +
Sbjct: 198 TYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLD 257

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           ++  SG  P+  +YT LIHGLC+K  + EA     EM+  G     V + +L  GL +  
Sbjct: 258 EMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMG 317

Query: 270 MLRTWRRLKKKLDEESIT 287
            L   R ++  + E+ + 
Sbjct: 318 ELDFAREMQILMVEKGVA 335



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 103/217 (47%), Gaps = 7/217 (3%)

Query: 55  RFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV 114
           R  + I ++ +++    +   + DV S+S  ++   +  Q   +++    M+EKG  P  
Sbjct: 67  RRRRGIPSSLRIYRPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDS 126

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLY 172
            TY+ ++  LC   ++E    L+ EM   G  P+  TY      +   GR DA  AM + 
Sbjct: 127 FTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDA--AMDIL 184

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK--GSGLGPDLDSYTMLIHGL 230
            +M+  G+  PN  +Y  LI        ++    +  ++K  G+   P++ +YT LIHGL
Sbjct: 185 DEMEHRGI-TPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGL 243

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           C+K  ++   ++  EMI  G  P   T+  L  GL Q
Sbjct: 244 CQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQ 280



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 10/126 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SLI G CK+  +D A      M+E+GV P+V TY  L+ G+C    L          
Sbjct: 305 IYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLD--------- 355

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +  EMR +GI P+  +++ +++ +++A +   +L  +N MK  G+ P    Y  +
Sbjct: 356 -EALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLMPAGDIYKIL 414

Query: 121 VKCLCS 126
            K L S
Sbjct: 415 FKSLYS 420


>gi|356534319|ref|XP_003535704.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Glycine max]
          Length = 507

 Score =  137 bits (344), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 141/283 (49%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GW +   +        EM ++G + +VV Y +++N  C+      +++F++ I 
Sbjct: 227 YTILLEGWSQQQNLIKVNEVCREMEDKGFQLDVVAYGIIMNAHCK------AKKFDEAI- 279

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               ++ EM+ RG+ P    +  +++      +   +L+     K  G  P   TY++VV
Sbjct: 280 ---GLYHEMKARGVRPSPHVYCTLINGLGSDKRLDEALEFFEVSKASGFVPEAPTYNAVV 336

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
              C   R++DA  ++GEM + G+ P++ T++         +    A  ++R+M      
Sbjct: 337 GAYCWSLRMDDAYRMVGEMKKCGIGPNSRTFDIVLHHLIKGRRIEEASSVFRRMNGGEFG 396

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P++ +Y I++ MF     +DM   +W+++KG G+ P +  ++ L+  LC + K  EAC
Sbjct: 397 CEPSVSTYEIMVRMFCNEELLDMAVAVWDEMKGKGILPGMHMFSTLVCALCHESKLDEAC 456

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           +YF EM++ G+ P    F TL   L+ + M         K+D+
Sbjct: 457 KYFQEMLDVGIRPPAKMFSTLKEALVDAGMEHVAMHFTLKIDK 499



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 128/267 (47%), Gaps = 25/267 (9%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           +M   G++P+V  +N L++ +C+           K++  A +VFD+MR   ++PD+ S++
Sbjct: 179 KMEHYGLKPHVSDFNKLVDVLCK----------SKSVEEAHEVFDKMRKLRLDPDIKSYT 228

Query: 84  IVLHVYSRAHQPQLSLDKLN----FMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
           I+L  +S+    Q +L K+N     M++KG    V  Y  ++   C   + ++A  L  E
Sbjct: 229 ILLEGWSQ----QQNLIKVNEVCREMEDKGFQLDVVAYGIIMNAHCKAKKFDEAIGLYHE 284

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
           M   GV PS   Y          K  + A++ +   K  G  VP   +YN ++G +    
Sbjct: 285 MKARGVRPSPHVYCTLINGLGSDKRLDEALEFFEVSKASGF-VPEAPTYNAVVGAYCWSL 343

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI--EKGLLPQKVT 257
           RMD    +  ++K  G+GP+  ++ +++H L + ++ +EA   F  M   E G  P   T
Sbjct: 344 RMDDAYRMVGEMKKCGIGPNSRTFDIVLHHLIKGRRIEEASSVFRRMNGGEFGCEPSVST 403

Query: 258 FETLYRGLIQSDML----RTWRRLKKK 280
           +E + R     ++L      W  +K K
Sbjct: 404 YEIMVRMFCNEELLDMAVAVWDEMKGK 430



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 92/181 (50%), Gaps = 1/181 (0%)

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           +FS+V   Y+RA + + ++     M+  G+ P V+ ++ +V  LC    +E+A E+  +M
Sbjct: 156 TFSLVARRYARARKAKEAIKTFEKMEHYGLKPHVSDFNKLVDVLCKSKSVEEAHEVFDKM 215

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
            +  + P  ++Y    + +  +++     ++ R+M++ G  + ++ +Y I++       +
Sbjct: 216 RKLRLDPDIKSYTILLEGWSQQQNLIKVNEVCREMEDKGFQL-DVVAYGIIMNAHCKAKK 274

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
            D    +++++K  G+ P    Y  LI+GL   ++  EA ++F      G +P+  T+  
Sbjct: 275 FDEAIGLYHEMKARGVRPSPHVYCTLINGLGSDKRLDEALEFFEVSKASGFVPEAPTYNA 334

Query: 261 L 261
           +
Sbjct: 335 V 335



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 27/180 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC--------------- 45
           +Y +LI G     R+D A  F       G  P   TYN ++   C               
Sbjct: 296 VYCTLINGLGSDKRLDEALEFFEVSKASGFVPEAPTYNAVVGAYCWSLRMDDAYRMVGEM 355

Query: 46  RRASLHPSER-FE---------KTIRNAEKVFDEMRVR--GIEPDVTSFSIVLHVYSRAH 93
           ++  + P+ R F+         + I  A  VF  M     G EP V+++ I++ ++    
Sbjct: 356 KKCGIGPNSRTFDIVLHHLIKGRRIEEASSVFRRMNGGEFGCEPSVSTYEIMVRMFCNEE 415

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
              +++   + MK KGI P +  +S++V  LC   ++++A +   EM+  G+ P A+ ++
Sbjct: 416 LLDMAVAVWDEMKGKGILPGMHMFSTLVCALCHESKLDEACKYFQEMLDVGIRPPAKMFS 475


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  137 bits (344), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 137/278 (49%), Gaps = 14/278 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G+    ++D A     EM++RG++PNVVTY  +++G+C+           + + 
Sbjct: 206 YAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCK----------AQVVD 255

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE VF +M  +G++PD  +++ ++H Y    + +  +  L  M   G+ P   TY S++
Sbjct: 256 RAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLL 315

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+ GR  +A  L   M+R G+ P+   Y      Y  +   +    L   M E+GL 
Sbjct: 316 NYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLS 375

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ H +NI+   +     +D    I+N +K  GL PD+ +Y  LI  LC+  +  +A  
Sbjct: 376 -PDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVL 434

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
            F +M+ +G+ P    F +L  GL   D    W + K+
Sbjct: 435 KFNQMMNEGVAPNIFVFNSLVYGLCTVD---KWEKAKE 469



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 142/279 (50%), Gaps = 17/279 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G CK   +D AE    +MI++GV+P+  TYN L++G           ++++ +R
Sbjct: 241 YTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIG------KWKEVVR 294

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVY---SRAHQPQLSLDKLNFMKEKGICPTVATYS 118
               + +EM   G++PD  ++  +L+      R  + +   D    M  KGI P VA Y 
Sbjct: 295 ----MLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDS---MIRKGIKPNVAIYG 347

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++    + G + +  +LL  MV NG+ P    +N  F  Y  +   + AM ++ +MK+ 
Sbjct: 348 ILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQ 407

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           GL  P++ +Y  LI     L R+D     +N +   G+ P++  +  L++GLC   KW++
Sbjct: 408 GLS-PDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEK 466

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A +++ EM+ +G+ P  V F T+   L     +   +RL
Sbjct: 467 AKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRL 505



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 11/268 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI+G+     +      L  M+E G+ P+   +N++     ++A           I
Sbjct: 345 IYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKA----------MI 394

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F++M+ +G+ PDV ++  ++    +  +   ++ K N M  +G+ P +  ++S+
Sbjct: 395 DEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSL 454

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  LC+  + E A+E   EM+  G+ P    +N        +     A +L   M+  G 
Sbjct: 455 VYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVG- 513

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P + SY  LIG    + R+D   +  + +   GL PD  +Y  L+HG C   +  +A 
Sbjct: 514 TRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAY 573

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             F EM+  G+ P  VT+ T+  GL  +
Sbjct: 574 GVFREMLRNGITPGVVTYSTILHGLFTT 601



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 130/284 (45%), Gaps = 9/284 (3%)

Query: 5   LIYGWCKINRI-DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           L+ G C   R+ +  +  +  M E G  P+VV+YN LL G C        +R E+ +   
Sbjct: 135 LLKGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNE------KRAEEALELL 188

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             + D  + R   P+V S++IV++ +    Q   + +    M ++GI P V TY++V+  
Sbjct: 189 HMMADS-QGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDG 247

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC    ++ AE +  +M+  GV P  +TYNC    Y         +++  +M   GL  P
Sbjct: 248 LCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGL-KP 306

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           + ++Y  L+       R    R +++ +   G+ P++  Y +LIHG   K    E     
Sbjct: 307 DCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLL 366

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             M+E GL P    F  ++    +  M+     +  K+ ++ ++
Sbjct: 367 NLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLS 410



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 137/294 (46%), Gaps = 11/294 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ SL+YG C +++ + A+ F  EM+ +G+ P+VV +N +L  +C +            +
Sbjct: 450 VFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQ----------V 499

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++ D M   G  P V S++ ++  +    +   +   L+ M   G+ P   TY+++
Sbjct: 500 MKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTL 559

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  GRI+DA  +  EM+RNG+ P   TY+         +  + A +LY  M   G 
Sbjct: 560 LHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGK 619

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              N+  YNI++      N +D   +++  +       ++ ++ ++I  L +  + ++A 
Sbjct: 620 -QWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAM 678

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
             F  +   GL+P   T+  +   LI+   L  +  L   +++   T  S   N
Sbjct: 679 HLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLN 732



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 137/304 (45%), Gaps = 13/304 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI  +C++ R++      G +++ G   N +  N LL G+C       ++R  + + 
Sbjct: 97  YSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLC------DAKRLCEAMD 150

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE---KGICPTVATYS 118
              K   E+   G  PDV S++ +L  +    + + +L+ L+ M +   +   P V +Y+
Sbjct: 151 ILVKRMPEL---GCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYA 207

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            V+    + G+++ A  L  EM+  G+ P+  TY          +  + A  +++QM + 
Sbjct: 208 IVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDK 267

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P+  +YN LI  ++++ +   V  +  ++   GL PD  +Y  L++ LC   + +E
Sbjct: 268 GV-KPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCRE 326

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
           A   F  MI KG+ P    +  L  G      L     L   + E  ++      N  F 
Sbjct: 327 ARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFT 386

Query: 299 PYRR 302
            Y +
Sbjct: 387 AYAK 390



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 129/293 (44%), Gaps = 26/293 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSE-RFEKT 59
           ++  +   + K   ID A     +M ++G+ P+VV Y  L++ +C+   +  +  +F + 
Sbjct: 380 IFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQM 439

Query: 60  IR------------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           +                          A++ + EM  +GI PDV  F+ +L       Q 
Sbjct: 440 MNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQV 499

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +   ++ M+  G  P V +Y++++   C  GRI++A + L  M+  G+ P   TYN  
Sbjct: 500 MKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTL 559

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y      + A  ++R+M  +G+  P + +Y+ ++       R    +E++ ++  SG
Sbjct: 560 LHGYCRAGRIDDAYGVFREMLRNGI-TPGVVTYSTILHGLFTTRRFSEAKELYLNMITSG 618

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
              ++  Y ++++GL +     EA + F  +  K    +  TF  +   L +S
Sbjct: 619 KQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKS 671



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 114/274 (41%), Gaps = 51/274 (18%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH-------QPQLSLDKLNFMKEK---G 109
           + +A K+FD +        V +F+ +L   SR         + +L +   N M  +    
Sbjct: 30  LDDALKLFDGLLTHARPASVIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIK 89

Query: 110 ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN--------------GVC--------- 146
           + P   TYS ++ C C  GR+E      G ++++              G+C         
Sbjct: 90  VTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAM 149

Query: 147 -------------PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG--LCVPNMHSYNIL 191
                        P   +YN   K +   K A  A++L   M +     C PN+ SY I+
Sbjct: 150 DILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIV 209

Query: 192 IGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 251
           I  F    ++D    ++ ++   G+ P++ +YT +I GLC+ Q    A   F +MI+KG+
Sbjct: 210 INGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGV 269

Query: 252 LPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
            P   T+  L  G +    +  W+ + + L+E S
Sbjct: 270 KPDNDTYNCLIHGYLS---IGKWKEVVRMLEEMS 300



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 89/192 (46%), Gaps = 25/192 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV--CRRAS---------L 50
           Y +L++G+C+  RID A     EM+  G+ P VVTY+ +L+G+   RR S         +
Sbjct: 556 YNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMI 615

Query: 51  HPSERFEKTIRN--------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
              +++   I N              A K+F  +  +  + ++T+F+I++    ++ + +
Sbjct: 616 TSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNE 675

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++     +   G+ P V TY  + + L   G +E+ ++L   M ++G  P++   N   
Sbjct: 676 DAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALV 735

Query: 157 KEYRGRKDANGA 168
           +    R D   A
Sbjct: 736 RRLLHRGDITRA 747


>gi|224102411|ref|XP_002312667.1| predicted protein [Populus trichocarpa]
 gi|222852487|gb|EEE90034.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 143/285 (50%), Gaps = 17/285 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+C+  RID A   +  M   G +P++VTYNVLLN  C           E   
Sbjct: 222 VYNALISGFCRAGRIDKALAMVSFMSRTGCKPDLVTYNVLLNYCCN----------EFMF 271

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLS-LDKLNFMKEKGICPTVATYSS 119
             A K+  +M    IEPDV S++ +L  + +A+ P  + L  +  M  KG C  V +Y++
Sbjct: 272 EEAVKLLKKMECSAIEPDVYSYNQLLKAHCKANHPDKAYLFMVTKMVPKGFCDVV-SYNT 330

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++K  CS      A +L  EM R G+ P   T+    K +    +++ A KL   M   G
Sbjct: 331 IIKAFCSISNNRRAYKLFEEMGRKGIAPDVVTFTILIKAFLREGNSDMAKKLLDLMAGMG 390

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           L +P+   Y  +I       +++M   I+ D+   G+ PD+ SY  LI+G C+  +  E 
Sbjct: 391 L-LPDRIFYTTIIDHHCKSGKVEMAHSIFCDMVEKGITPDVVSYNALINGFCKSLRVGEV 449

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLKKK 280
              + +M+++G  P +VT++ +   L++    SD  R W ++ ++
Sbjct: 450 MHLYEQMLQRGSFPDEVTYKLIIGALVRENKLSDACRVWDQMMER 494



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 13/230 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFL-GEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y  L+   CK N  D A  F+  +M+ +G   +VV+YN ++   C  ++           
Sbjct: 293 YNQLLKAHCKANHPDKAYLFMVTKMVPKGF-CDVVSYNTIIKAFCSISN----------N 341

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R A K+F+EM  +GI PDV +F+I++  + R     ++   L+ M   G+ P    Y+++
Sbjct: 342 RRAYKLFEEMGRKGIAPDVVTFTILIKAFLREGNSDMAKKLLDLMAGMGLLPDRIFYTTI 401

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G++E A  +  +MV  G+ P   +YN     +         M LY QM + G 
Sbjct: 402 IDHHCKSGKVEMAHSIFCDMVEKGITPDVVSYNALINGFCKSLRVGEVMHLYEQMLQRG- 460

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
             P+  +Y ++IG  +  N++     +W+ +   GL  D     MLI+ +
Sbjct: 461 SFPDEVTYKLIIGALVRENKLSDACRVWDQMMERGLTLDRGISEMLINAI 510



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 136/317 (42%), Gaps = 62/317 (19%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF-----EKTIRNAEKVF 67
           NR + A    G M+ERG EP+VVT+ ++++G+C+      + +F     +K IR   K  
Sbjct: 128 NREESALEVFGRMVERGREPDVVTFTIIIDGLCKMKKFDAAVQFWLNMLDKGIRPDNKAC 187

Query: 68  DEMRVR---------------GI------EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMK 106
             + V                G+      E     ++ ++  + RA +   +L  ++FM 
Sbjct: 188 VALAVGLCDGGQVDLAYELIIGVISGGLSEVSTLVYNALISGFCRAGRIDKALAMVSFMS 247

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY------- 159
             G  P + TY+ ++   C+    E+A +LL +M  + + P   +YN   K +       
Sbjct: 248 RTGCKPDLVTYNVLLNYCCNEFMFEEAVKLLKKMECSAIEPDVYSYNQLLKAHCKANHPD 307

Query: 160 ------------RGRKDANG----------------AMKLYRQMKEDGLCVPNMHSYNIL 191
                       +G  D                   A KL+ +M   G+  P++ ++ IL
Sbjct: 308 KAYLFMVTKMVPKGFCDVVSYNTIIKAFCSISNNRRAYKLFEEMGRKGI-APDVVTFTIL 366

Query: 192 IGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 251
           I  F+     DM +++ + + G GL PD   YT +I   C+  K + A   F +M+EKG+
Sbjct: 367 IKAFLREGNSDMAKKLLDLMAGMGLLPDRIFYTTIIDHHCKSGKVEMAHSIFCDMVEKGI 426

Query: 252 LPQKVTFETLYRGLIQS 268
            P  V++  L  G  +S
Sbjct: 427 TPDVVSYNALINGFCKS 443



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 119/310 (38%), Gaps = 50/310 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+  I G C+       +  L +M +    P++  +N+ LN + R          E    
Sbjct: 82  YSRFISGLCQTKEFTFIDNLLKDMEKLHCVPDIWAFNIYLNLLFR----------ENREE 131

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP--------- 112
           +A +VF  M  RG EPDV +F+I++    +  +   ++     M +KGI P         
Sbjct: 132 SALEVFGRMVERGREPDVVTFTIIIDGLCKMKKFDAAVQFWLNMLDKGIRPDNKACVALA 191

Query: 113 ---------------------------TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
                                      +   Y++++   C  GRI+ A  ++  M R G 
Sbjct: 192 VGLCDGGQVDLAYELIIGVISGGLSEVSTLVYNALISGFCRAGRIDKALAMVSFMSRTGC 251

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P   TYN              A+KL ++M+   +  P+++SYN L+      N  D   
Sbjct: 252 KPDLVTYNVLLNYCCNEFMFEEAVKLLKKMECSAI-EPDVYSYNQLLKAHCKANHPDKAY 310

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
                        D+ SY  +I   C     + A + F EM  KG+ P  VTF  L +  
Sbjct: 311 LFMVTKMVPKGFCDVVSYNTIIKAFCSISNNRRAYKLFEEMGRKGIAPDVVTFTILIKAF 370

Query: 266 IQ---SDMLR 272
           ++   SDM +
Sbjct: 371 LREGNSDMAK 380



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 112/263 (42%), Gaps = 10/263 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y   I    + +R D+A  +  +M   G   +  TY+  ++G+C+           K   
Sbjct: 47  YNRFIGVLIRHSRFDLAHHYYSKMAPLGFSLSSFTYSRFISGLCQ----------TKEFT 96

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             + +  +M      PD+ +F+I L++  R ++ + +L+    M E+G  P V T++ ++
Sbjct: 97  FIDNLLKDMEKLHCVPDIWAFNIYLNLLFRENREESALEVFGRMVERGREPDVVTFTIII 156

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   + + A +    M+  G+ P  +               + A +L   +   GL 
Sbjct: 157 DGLCKMKKFDAAVQFWLNMLDKGIRPDNKACVALAVGLCDGGQVDLAYELIIGVISGGLS 216

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +   YN LI  F    R+D    + + +  +G  PDL +Y +L++  C +  ++EA +
Sbjct: 217 EVSTLVYNALISGFCRAGRIDKALAMVSFMSRTGCKPDLVTYNVLLNYCCNEFMFEEAVK 276

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
              +M    + P   ++  L + 
Sbjct: 277 LLKKMECSAIEPDVYSYNQLLKA 299



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 1/149 (0%)

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+  +  L    R + A     +M   G   S+ TY+ F       K+      L + M 
Sbjct: 47  YNRFIGVLIRHSRFDLAHHYYSKMAPLGFSLSSFTYSRFISGLCQTKEFTFIDNLLKDM- 105

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           E   CVP++ ++NI + +    NR +   E++  +   G  PD+ ++T++I GLC+ +K+
Sbjct: 106 EKLHCVPDIWAFNIYLNLLFRENREESALEVFGRMVERGREPDVVTFTIIIDGLCKMKKF 165

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGL 265
             A Q+++ M++KG+ P       L  GL
Sbjct: 166 DAAVQFWLNMLDKGIRPDNKACVALAVGL 194



 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 94/263 (35%), Gaps = 37/263 (14%)

Query: 60  IRNAEKVFDEM-----RVRGIEPDV--------TSFSIVLHVYSRAHQPQLSLDKLNFMK 106
           I  A KVFDEM     RV GI+ +         + F +  H YS+      SL    + +
Sbjct: 25  IDYAVKVFDEMTLSECRVFGIDYNRFIGVLIRHSRFDLAHHYYSKMAPLGFSLSSFTYSR 84

Query: 107 -EKGIC---------------------PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
              G+C                     P +  ++  +  L    R E A E+ G MV  G
Sbjct: 85  FISGLCQTKEFTFIDNLLKDMEKLHCVPDIWAFNIYLNLLFRENREESALEVFGRMVERG 144

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
             P   T+          K  + A++ +  M + G+   N     + +G+     ++D+ 
Sbjct: 145 REPDVVTFTIIIDGLCKMKKFDAAVQFWLNMLDKGIRPDNKACVALAVGLCDG-GQVDLA 203

Query: 205 REIWNDVKGSGLGP-DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            E+   V   GL       Y  LI G C   +  +A      M   G  P  VT+  L  
Sbjct: 204 YELIIGVISGGLSEVSTLVYNALISGFCRAGRIDKALAMVSFMSRTGCKPDLVTYNVLLN 263

Query: 264 GLIQSDMLRTWRRLKKKLDEESI 286
                 M     +L KK++  +I
Sbjct: 264 YCCNEFMFEEAVKLLKKMECSAI 286


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 146/296 (49%), Gaps = 11/296 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ G+CK  ++  A +    M++RGV PNVVTY  L +G+C++            ++
Sbjct: 437 YTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGD----------VQ 486

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++  EM  +G+E +  +++ +++   +A     ++  +  M   G+ P V TY++++
Sbjct: 487 AANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLI 546

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G ++ A +LL EM+ NG+ P+  TYN     +       G  KL   M E  + 
Sbjct: 547 DALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIH 606

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +YN L+  +   N M    EI+  +    + P+ ++Y +LI G C+ +  KEA  
Sbjct: 607 -PNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQY 665

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
           +  EMIEKG      ++  L R L +       R+L   + +E  T   +  N++ 
Sbjct: 666 FHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYI 721



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 130/263 (49%), Gaps = 11/263 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+++ G+C    +  A R+  EM  +G+  + VTY  L+NG+CR   L          
Sbjct: 366 VYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGEL---------- 415

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + AEKV  EM  R ++ D  ++++++  Y +  +   +    N M ++G+ P V TY+++
Sbjct: 416 KEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTAL 475

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              LC  G ++ A ELL EM   G+  +A TYN            + AM+    M   GL
Sbjct: 476 SDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGL 535

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++++Y  LI        +D   ++  ++  +G+ P + +Y +L++G C   + +   
Sbjct: 536 -KPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGK 594

Query: 241 QYFVEMIEKGLLPQKVTFETLYR 263
           +    M+EK + P   T+ +L +
Sbjct: 595 KLLEWMLEKNIHPNATTYNSLMK 617



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 135/289 (46%), Gaps = 19/289 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L  G CK   +  A   L EM  +G+E N  TYN L+NG+C+   L           
Sbjct: 472 YTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLD---------- 521

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +   +M   G++PDV +++ ++    ++ +   + D L  M + GI PT+ TY+ ++
Sbjct: 522 QAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLM 581

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR+E  ++LL  M+   + P+A TYN   K+Y    +     ++Y+     G+C
Sbjct: 582 NGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYK-----GMC 636

Query: 182 V----PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
                PN ++YNILI        M   +   N++   G      SY+ LI  L +K+K+ 
Sbjct: 637 SRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFV 696

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           EA + F +M ++G   +   +          D L     L  +L E SI
Sbjct: 697 EARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNLEATLALCDELVEASI 745



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 144/324 (44%), Gaps = 31/324 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-------- 53
           Y  LI+G+C +  ++ A + L +M+ RGVEPN   Y  ++  +C +  +  +        
Sbjct: 297 YGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMV 356

Query: 54  -------ERFEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                  E    T+ +          A + FDEM+ +G+  D  +++ +++   RA + +
Sbjct: 357 HHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELK 416

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L  M  + +     TY+ +V   C  G++ +A ++   MV+ GV P+  TY    
Sbjct: 417 EAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALS 476

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                + D   A +L  +M   GL + N  +YN LI        +D       D+  +GL
Sbjct: 477 DGLCKQGDVQAANELLHEMSNKGLEL-NACTYNSLINGLCKAGYLDQAMRTMADMDAAGL 535

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD+ +YT LI  LC+  +   A     EM++ G+ P  VT+  L  G   S  +   ++
Sbjct: 536 KPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKK 595

Query: 277 -----LKKKLDEESITFGSEFQNY 295
                L+K +   + T+ S  + Y
Sbjct: 596 LLEWMLEKNIHPNATTYNSLMKQY 619



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 123/267 (46%), Gaps = 14/267 (5%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           E+ +   + NV +YN+LL  +C              + +A ++FDEM      PDV ++ 
Sbjct: 252 ELFQGLPDKNVCSYNILLKVLCGAGR----------VEDARQLFDEM---ASPPDVVTYG 298

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
           I++H Y    + + ++  L+ M  +G+ P    Y+SVV  LC  GR+ DA  ++ +MV +
Sbjct: 299 ILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHH 358

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
            V      Y      +  + D   A + + +M+  GL    + +Y  LI        +  
Sbjct: 359 KVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGV-TYTTLINGLCRAGELKE 417

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             ++  ++    L  D  +YT+L+ G C++ K  EA Q    M+++G+ P  VT+  L  
Sbjct: 418 AEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSD 477

Query: 264 GLIQSDMLRTWRRLKKKLDEESITFGS 290
           GL +   ++    L  ++  + +   +
Sbjct: 478 GLCKQGDVQAANELLHEMSNKGLELNA 504


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 150/297 (50%), Gaps = 22/297 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++   C   ++  A   L  M++R   P+V+TY +L+   CR          +  + 
Sbjct: 207 YNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCR----------DSGVG 256

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ DEMR RG  PDV +++++++   +  +   ++  LN M   G  P V T++ ++
Sbjct: 257 QAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIIL 316

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG-AMKLYRQMKEDGL 180
           + +CS GR  DAE+LL +M+R G  PS  T+N     +  RK   G A+ +  +M + G 
Sbjct: 317 RSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILI-NFLCRKGLLGRAIDILEKMPKHG- 374

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN  SYN L+  F    +MD   E    +   G  PD+ +Y  ++  LC+  K ++A 
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAV 434

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK-------KKLDEESITFGS 290
           +   ++  KG  P  +T+ T+  GL ++   +T + +K       K L  ++IT+ S
Sbjct: 435 EILNQLSSKGCSPVLITYNTVIDGLAKAG--KTGKAIKLLDEMRAKDLKPDTITYSS 489



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 134/292 (45%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI- 60
           YT LI   C+ + +  A + L EM +RG  P+VVTYNVL+NG+C+   L  + +F   + 
Sbjct: 242 YTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMP 301

Query: 61  ------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                    +AEK+  +M  +G  P V +F+I+++   R     
Sbjct: 302 SSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLG 361

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++D L  M + G  P   +Y+ ++   C   +++ A E L  MV  G  P   TYN   
Sbjct: 362 RAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTML 421

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      A+++  Q+   G C P + +YN +I       +     ++ ++++   L
Sbjct: 422 TALCKDGKVEDAVEILNQLSSKG-CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDL 480

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            PD  +Y+ L+ GL  + K  EA ++F E    G+ P  VTF ++  GL ++
Sbjct: 481 KPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKT 532



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 137/277 (49%), Gaps = 11/277 (3%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++   C   R   AE+ L +M+ +G  P+VVT+N+L+N +CR+  L            A 
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLG----------RAI 364

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            + ++M   G +P+  S++ +LH + +  +   +++ L  M  +G  P + TY++++  L
Sbjct: 365 DILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTAL 424

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G++EDA E+L ++   G  P   TYN              A+KL  +M+   L  P+
Sbjct: 425 CKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDL-KPD 483

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
             +Y+ L+G      ++D   + +++ +  G+ P+  ++  ++ GLC+ ++   A  + V
Sbjct: 484 TITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLV 543

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            MI +G  P + ++  L  GL    M +    L  +L
Sbjct: 544 YMINRGCKPTETSYTILIEGLAYEGMAKEALELLNEL 580



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 124/252 (49%), Gaps = 14/252 (5%)

Query: 20  RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDV 79
           +FL  M+  G  P+++    L+ G CR              R A K+ + +   G  PDV
Sbjct: 123 KFLENMVYHGNVPDIIPCTTLIRGFCRMGK----------TRKAAKILEVLEGSGAVPDV 172

Query: 80  TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
            ++++++  Y +A +   +L  L+ M    + P V TY+++++ LC  G+++ A E+L  
Sbjct: 173 ITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDR 229

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
           M++    P   TY    +          AMKL  +M++ G C P++ +YN+L+       
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRG-CTPDVVTYNVLVNGICKEG 288

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           R+D   +  ND+  SG  P++ ++ +++  +C   +W +A +   +M+ KG  P  VTF 
Sbjct: 289 RLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFN 348

Query: 260 TLYRGLIQSDML 271
            L   L +  +L
Sbjct: 349 ILINFLCRKGLL 360


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 153/288 (53%), Gaps = 14/288 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+CK  ++  A+  L EM+ + + PN +T+N+L++G CR          ++ + 
Sbjct: 267 YNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCR----------DENVT 316

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+KVF+EM+ +G++P+V +++ +++      +   +L   + M   G+ P V TY++++
Sbjct: 317 AAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALI 376

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    +++A E+L ++ + G+ P+  T+N     Y      + A  L   M + G+C
Sbjct: 377 NGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVC 436

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN LI  F     +   R++  +++G+GL  DL +Y +L+  LC+K + ++A +
Sbjct: 437 -PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVR 495

Query: 242 YFVEMI---EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM    +KG     VT+  L +G      L    RL  ++ E+ +
Sbjct: 496 LLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGL 543



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 141/263 (53%), Gaps = 14/263 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI G+C+   +  A++   EM  +G++PNVVTYN L+NG+C    L  +   +    
Sbjct: 302 FNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQ---- 357

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 D+M   G++P+V +++ +++ + +    + + + L+ + ++G+ P V T+++++
Sbjct: 358 ------DKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLI 411

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 GR++DA  L   M+  GVCP+  TYNC    +    +   A KL ++M+ +GL 
Sbjct: 412 DAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGL- 470

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWND---VKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
             ++ +YNIL+              + ++   ++  G   ++ +Y +LI G C K K +E
Sbjct: 471 KADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEE 530

Query: 239 ACQYFVEMIEKGLLPQKVTFETL 261
           A +   EM+EKGL+P + T++ L
Sbjct: 531 ANRLLNEMLEKGLIPNRTTYDIL 553



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 28/255 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G C   ++D A     +M   G++PNVVTYN L+NG C++          K ++
Sbjct: 337 YNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKK----------KMLK 386

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D++  RG+ P+V +F+ ++  Y +A +   +    + M + G+CP V+TY+ ++
Sbjct: 387 EAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLI 446

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK--EDG 179
              C  G +++A +L  EM  NG+     TYN        + +   A++L  +M   E  
Sbjct: 447 VGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKK 506

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
               N+ +YN+LI  F    +++    + N++   GL P+  +Y +L             
Sbjct: 507 GRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRD----------- 555

Query: 240 CQYFVEMIEKGLLPQ 254
                EM+EKG +P 
Sbjct: 556 -----EMMEKGFIPD 565



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 130/257 (50%), Gaps = 11/257 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L++ + K   +D+A        + G   + ++ N +L  + +          E  I   E
Sbjct: 165 LVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVK----------EGRIGVVE 214

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            V+ EM  R I  +V +F +V++   +  + Q + D +  MK  G  P+V TY++++   
Sbjct: 215 SVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGY 274

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G++  A+ LL EMV   + P+  T+N     +   ++   A K++ +M+  GL  PN
Sbjct: 275 CKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGL-QPN 333

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +YN LI    +  ++D    + + + G GL P++ +Y  LI+G C+K+  KEA +   
Sbjct: 334 VVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLD 393

Query: 245 EMIEKGLLPQKVTFETL 261
           ++ ++GL P  +TF TL
Sbjct: 394 DIGKRGLAPNVITFNTL 410



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 67/136 (49%), Gaps = 13/136 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C+   +  A +   EM   G++ ++VTYN+L++ +C++             R
Sbjct: 442 YNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGE----------TR 491

Query: 62  NAEKVFDEMRV---RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A ++ DEM +   +G   ++ ++++++  +    + + +   LN M EKG+ P   TY 
Sbjct: 492 KAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYD 551

Query: 119 SVVKCLCSCGRIEDAE 134
            +   +   G I D +
Sbjct: 552 ILRDEMMEKGFIPDID 567


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  136 bits (343), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 154/315 (48%), Gaps = 26/315 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           +++LIYG+C + +++ A     EM+ + + P+  T+N+L++ +C+  +L  ++       
Sbjct: 246 FSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMM 305

Query: 56  -------------------FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  +  A+ V + +   G  P+  S+  +++ + +     
Sbjct: 306 KEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVD 365

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   N M+ KGI P   TY+S++  LC  GRI  A EL+ EM  NG   +  TYNC  
Sbjct: 366 EALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLI 425

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A+ L +++K+ G+  P+M+++NILI     + R+   ++++ D+   G 
Sbjct: 426 DALCKNHHVDQAIALVKKIKDQGI-QPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGY 484

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
             +  +Y ++++GLC++  + EA     +M + G++P  VT+ETL + L   D      +
Sbjct: 485 SVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEK 544

Query: 277 LKKKLDEESITFGSE 291
           L +++    + +  E
Sbjct: 545 LLREMIARDVVYALE 559



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 139/320 (43%), Gaps = 44/320 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++I   CK   +  A     +MI + + P+VVT++ L+ G C    L          
Sbjct: 210 MYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQL---------- 259

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F EM ++ I PD  +F+I++    +    + + + L  M ++G+ P V TYSS+
Sbjct: 260 EEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSL 319

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK---- 176
           +   C   ++  A+ +L  + + G  P+A +Y      +   K  + A+ L+  M+    
Sbjct: 320 MDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGI 379

Query: 177 ----------EDGLC-----------VPNMH---------SYNILIGMFMALNRMDMVRE 206
                      DGLC           V  MH         +YN LI      + +D    
Sbjct: 380 APDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIA 439

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +   +K  G+ PD+ ++ +LI+GLC+  + K A   F +++ KG      T+  +  GL 
Sbjct: 440 LVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLC 499

Query: 267 QSDMLRTWRRLKKKLDEESI 286
           +  +      L  K+D+  I
Sbjct: 500 KEGLFDEAEALLSKMDDNGI 519



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 137/292 (46%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK--- 58
           +  LI  +C +  ++ A   + ++++ G EP+ +T+N L+ G+C    +  +  F     
Sbjct: 106 FNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVL 165

Query: 59  ------------TIRNAEKVFDEMR-----VRGIEPDVTSFSIVLH--VYSRAHQPQLSL 99
                       T+ N      E R     +R I+  +   ++V++  +     + +L +
Sbjct: 166 ALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVI 225

Query: 100 DKLNF---MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           D       M  K I P V T+S+++   C  G++E+A  L  EMV   + P   T+N   
Sbjct: 226 DAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILV 285

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                  +  GA  +   M ++G+ +PN+ +Y+ L+  +  +N+++  + + N +   G 
Sbjct: 286 DALCKEGNLKGAKNMLVVMMKEGV-MPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGA 344

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            P+  SY  +I+G C+ +   EA   F +M  KG+ P KVT+ +L  GL +S
Sbjct: 345 APNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKS 396



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 100/218 (45%), Gaps = 3/218 (1%)

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           +   GI PD+ +F+I+++ Y    +   +   +  + + G  P   T+++++K LC  G+
Sbjct: 94  LEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGK 153

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP-NMHSY 188
           +++A      ++  G      +Y           +   A+++ R++  DG  V  N+  Y
Sbjct: 154 VKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKI--DGKLVKINVVMY 211

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N +I        +    E+++ +    + PD+ +++ LI+G C   + +EA   F EM+ 
Sbjct: 212 NTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVL 271

Query: 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           K + P   TF  L   L +   L+  + +   + +E +
Sbjct: 272 KNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGV 309



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           A+ L R+++  G+  P++ ++NILI  +  +  M+    +   +   G  PD  ++  LI
Sbjct: 87  AISLSRRLEFHGI-TPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLI 145

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
            GLC   K KEA  +   ++  G    + ++ TL  GL +    RT  ++ +K+D
Sbjct: 146 KGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKID 200



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 27/119 (22%)

Query: 1   MYT--SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSE---- 54
           MYT   LIYG CK+ R+  A+    +++ +G   N  TYN+++NG+C+      +E    
Sbjct: 453 MYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLS 512

Query: 55  ------------RFEKTIR---------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92
                        +E  I+          AEK+  EM  R +   +    +VLH+ S A
Sbjct: 513 KMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREMIARDVVYALEGLEMVLHLESEA 571


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 137/267 (51%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+L++G  + N+   A   +  M+ +G +P++VTY  ++NG+C+R    P         
Sbjct: 173 FTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRG--EPDL------- 223

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + ++M    IE DV  +S V+    +      +L+    M  KGI P V TYSS++
Sbjct: 224 -ALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLI 282

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLC+ GR  DA  LL +M+   + P+  T+N     +        A KL+ +M +  + 
Sbjct: 283 SCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSI- 341

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN LI  F   +R+D  ++I+  +      PD+ +Y  LI+G C+ +K  +  +
Sbjct: 342 DPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGME 401

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F +M  +GL+   VT+ TL  G  Q+
Sbjct: 402 LFRDMSRRGLVGNTVTYTTLIHGFFQA 428



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 137/287 (47%), Gaps = 22/287 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI   C   R   A R L +M+ER + PNVVT+N L++   +          E  + 
Sbjct: 278 YSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAK----------EGKLI 327

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK+FDEM  R I+P++ +++ +++ +    +   +      M  K   P V TY++++
Sbjct: 328 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 387

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   ++ D  EL  +M R G+  +  TY      +    D + A  +++QM  DG+ 
Sbjct: 388 NGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVH 447

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN L+       +++    ++  ++ S + PD+ +Y ++  G+C+  K ++   
Sbjct: 448 -PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWD 506

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
            F  +  KG+ P  + + T+  G             KK L EE+ T 
Sbjct: 507 LFCSLSLKGVKPDVIAYNTMISGFC-----------KKGLKEEAYTL 542



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 128/276 (46%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I   C+ +++  A   LG+M++ G  P++VT N LLNG C              I 
Sbjct: 103 YNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCH----------GNRIS 152

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D+M   G +PD  +F+ ++H   + ++   ++  +  M  KG  P + TY +V+
Sbjct: 153 EAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVI 212

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G  + A  LL +M +  +      Y+         +  + A+ L+ +M   G+ 
Sbjct: 213 NGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGI- 271

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ LI       R      + +D+    + P++ ++  LI    ++ K  EA +
Sbjct: 272 RPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEK 331

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F EMI++ + P  VT+ +L  G    D L   +++
Sbjct: 332 LFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQI 367



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 134/299 (44%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ L+    K+ + D+   F  +M   GV  N+ TYN+++N +CRR+ L           
Sbjct: 68  FSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQL----------S 117

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +M   G  P + + + +L+ +   ++   ++  ++ M E G  P   T++++V
Sbjct: 118 FALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLV 177

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L    +  +A  L+  MV  G  P   TY         R + + A+ L  +M E G  
Sbjct: 178 HGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKM-EKGKI 236

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++  Y+ +I        +D    ++ ++   G+ PD+ +Y+ LI  LC   +W +A +
Sbjct: 237 EADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASR 296

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
              +M+E+ + P  VTF +L     +   L    +L     ++ +D   +T+ S    +
Sbjct: 297 LLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGF 355



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 130/282 (46%), Gaps = 16/282 (5%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           ++D A    GEM++    P++V ++ LL+ + +       ++F+  I   EK    M + 
Sbjct: 45  KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKM------KKFDLVISFGEK----MEIL 94

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           G+  ++ +++I+++   R  Q   +L  L  M + G  P++ T +S++   C   RI +A
Sbjct: 95  GVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEA 154

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             L+ +MV  G  P   T+            A+ A+ L  +M   G C P++ +Y  +I 
Sbjct: 155 VALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG-CQPDLVTYGAVIN 213

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
                   D+   + N ++   +  D+  Y+ +I  LC+ +   +A   F EM  KG+ P
Sbjct: 214 GLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRP 273

Query: 254 QKVTFETLYRGLIQ----SDMLRTWRR-LKKKLDEESITFGS 290
              T+ +L   L      SD  R     L++K++   +TF S
Sbjct: 274 DVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNS 315



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 103/216 (47%), Gaps = 26/216 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC---------------- 45
           Y SLI G+C  +R+D A++    M+ +   P+VVTYN L+NG C                
Sbjct: 348 YNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMS 407

Query: 46  RRASLHPSERFEKTIR---------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           RR  +  +  +   I          NA+ VF +M   G+ P++ +++ +L    +  + +
Sbjct: 408 RRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLE 467

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++    ++++  + P + TY+ + + +C  G++ED  +L   +   GV P    YN   
Sbjct: 468 KAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMI 527

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
             +  +     A  L+ +MKEDG  +P+  +YN LI
Sbjct: 528 SGFCKKGLKEEAYTLFIKMKEDG-PLPDSGTYNTLI 562



 Score = 45.4 bits (106), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 61/190 (32%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS----ERFE 57
           YT+LI+G+ + +  D A+    +M+  GV PN++TYN LL+G+C+   L  +    E  +
Sbjct: 418 YTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 477

Query: 58  KT---------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           K+                     + +   +F  + ++G++PDV +++ ++  + +    +
Sbjct: 478 KSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKE 537

Query: 97  LSLDKLNFMKEKGICPTVATYSS-----------------------------------VV 121
            +      MKE G  P   TY++                                   V 
Sbjct: 538 EAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVT 597

Query: 122 KCLCSCGRIE 131
             L   GR++
Sbjct: 598 DMLHD-GRLD 606


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 149/317 (47%), Gaps = 45/317 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + SL+ G+CK   +D A + LG M+ +G+ PNVVTY+ L++G+C+      S++F +   
Sbjct: 252 FNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCK------SQKFLE--- 302

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A++V +EM+ RG+ PD  ++S ++H   +A + + +   L  M   G  P V  YSS++
Sbjct: 303 -AKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSII 361

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG-- 179
              C  G++ +A++ L EM +    P   TYN              A  +  QM+E G  
Sbjct: 362 HAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDV 421

Query: 180 ---------------------------------LCVPNMHSYNILIGMFMALNRMDMVRE 206
                                             C P++ +Y  +I       R++    
Sbjct: 422 LPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEY 481

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +   +K +G  P++ +YT LI GLC+ +K  EA +   EM   G  P  VT+ T+  GL 
Sbjct: 482 LLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLC 541

Query: 267 QSDMLRTWRRLKKKLDE 283
            S  ++  ++L +++ +
Sbjct: 542 VSGRIKEAQQLVQRMKD 558



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 144/297 (48%), Gaps = 29/297 (9%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA------ 63
           CK +R +  + F  E++    EP+V +YN++++G C    LH +    + +++A      
Sbjct: 90  CKKHR-EAGDLFRSELLA-SCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDA 147

Query: 64  ----------------EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE 107
                           +   D +R  G +P+V +++ ++  ++RA + + ++  L  M+E
Sbjct: 148 FTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRE 207

Query: 108 KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG 167
           +G  P + TY+ +V  LC    +  A++++ +M+  G  P+  T+N     +  R + + 
Sbjct: 208 RGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDD 267

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           A KL   M   G+  PN+ +Y+ LI       +    +E+  ++K  G+ PD  +Y+ LI
Sbjct: 268 ARKLLGIMVAKGM-RPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALI 326

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML----RTWRRLKKK 280
           HGLC+  K +EA Q    M   G  P  V + ++     +S  L    +T + ++K+
Sbjct: 327 HGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQ 383



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 126/264 (47%), Gaps = 14/264 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T +I        +D A   L  M   G +PNVVTY  L+    R           K + 
Sbjct: 150 HTPIITAMANAGDLDGAMDHLRSM---GCDPNVVTYTALIAAFAR----------AKKLE 196

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ +EMR RG  P++ ++++++    +      + D +  M E G  P V T++S+V
Sbjct: 197 EAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLV 256

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G ++DA +LLG MV  G+ P+  TY+         +    A ++  +MK  G+ 
Sbjct: 257 DGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGV- 315

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y+ LI      ++++   ++   + GSG  PD+  Y+ +IH  C+  K  EA +
Sbjct: 316 TPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQK 375

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
              EM ++   P  VT+ T+  GL
Sbjct: 376 TLQEMRKQRKSPDVVTYNTVIDGL 399



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 128/249 (51%), Gaps = 14/249 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+S+I+ +CK  ++  A++ L EM ++   P+VVTYN +++G+C+             I
Sbjct: 356 VYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGK----------I 405

Query: 61  RNAEKVFDEMRVRG-IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
             A+ + ++M+  G + PDV ++S V++   ++     +   L+ M + G  P V TY++
Sbjct: 406 AEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTT 465

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC CGR+E+AE LL  M R G  P+  TY          +  + A ++  +M+  G
Sbjct: 466 IIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAG 525

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG--SGLGPDLDSYTMLIHGLCEKQKWK 237
            C PN+ +YN ++       R+   +++   +K   +   PD  +Y  +++ L      +
Sbjct: 526 -CPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQ 584

Query: 238 EACQYFVEM 246
           EA Q   +M
Sbjct: 585 EAEQLLEQM 593



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 108/227 (47%), Gaps = 4/227 (1%)

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R A  +F    +   EPDV S++IV+  +  A     +L+ L  MK  G  P   T++ +
Sbjct: 94  REAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPI 153

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  + + G ++ A + L  M   G  P+  TY      +   K    AMKL  +M+E G 
Sbjct: 154 ITAMANAGDLDGAMDHLRSM---GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERG- 209

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN+ +YN+L+     L+ +   +++   +   G  P++ ++  L+ G C++    +A 
Sbjct: 210 CPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDAR 269

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +    M+ KG+ P  VT+  L  GL +S      + + +++    +T
Sbjct: 270 KLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVT 316



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 95/219 (43%), Gaps = 13/219 (5%)

Query: 74  GIEPDVTSFS-------IVLHVYSRAHQPQLSLDKLNFMKEK--GICPTVATYSSVVKCL 124
            IEPD++ FS       IV  V +     +L+L    +      G   T  +++S+++ L
Sbjct: 28  AIEPDLSPFSGASTTPRIVGRVVNSLKDAKLALAFFRWAPASIPGFSHTAFSWNSLLQVL 87

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
             C +  +A +L    +     P   +YN     +    D + A++L  +MK  G   P+
Sbjct: 88  VRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGF-APD 146

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
             ++  +I        +D      + ++  G  P++ +YT LI      +K +EA +   
Sbjct: 147 AFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLE 203

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           EM E+G  P  VT+  L   L +  M+   + + KK+ E
Sbjct: 204 EMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIE 242


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 147/296 (49%), Gaps = 11/296 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G+CK  ++  A +    M++RGV PNVVTY  L +G+C++            ++
Sbjct: 434 YTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGD----------VQ 483

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++  EM  +G+E +  +++ +++   +A   + ++  +  M    + P V TY++++
Sbjct: 484 AANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLI 543

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G ++ A  LL EM+  G+ P+  TYN     +       G  KL   M E  + 
Sbjct: 544 DALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIH 603

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +YN L+  +   N M    EI+  ++   +GP+ ++Y +LI G C+ +  KEA  
Sbjct: 604 -PNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALY 662

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
           +  EMI+KG      ++  L R L +       R L   + +E +T  S+  +++ 
Sbjct: 663 FHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHDMRKEGLTAESDVYDFYI 718



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 135/285 (47%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L  G CK   +  A   L EM  +G+E N  TYN L+NG+C+   L           
Sbjct: 469 YTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYL----------E 518

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +   +M    ++PDV +++ ++    ++     +   L  M +KGI PT+ TY+ ++
Sbjct: 519 QAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLM 578

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR+E  ++LL  M+   + P+A TYN   K+Y    +     ++Y+ M+   + 
Sbjct: 579 NGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVG 638

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN ++YNILI        M       +++   G      SY+ LI  L +K+K+ EA +
Sbjct: 639 -PNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARE 697

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F +M ++GL  +   ++         D L +   L  +L E SI
Sbjct: 698 LFHDMRKEGLTAESDVYDFYIDLNFNEDNLESTLALCDELVEASI 742



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 127/264 (48%), Gaps = 13/264 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+++ G+C    +  A R+  EM  +G+  + VTY  ++NG+CR   L          
Sbjct: 363 LYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVEL---------- 412

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AEK+  EM  R ++ D  ++++++  Y +  +   +    N M ++G+ P V TY+++
Sbjct: 413 EEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTAL 472

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              LC  G ++ A ELL EM   G+  +A TYN              AM+    M  D  
Sbjct: 473 TDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADM--DTA 530

Query: 181 CV-PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           C+ P++++Y  LI        +D    +  ++   G+ P + +Y +L++G C   + +  
Sbjct: 531 CLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGG 590

Query: 240 CQYFVEMIEKGLLPQKVTFETLYR 263
            +    M+EK + P   T+ +L +
Sbjct: 591 KKLLDWMLEKNIHPNAATYNSLMK 614



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 141/324 (43%), Gaps = 31/324 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  LI+G C +  ++ A + L EM+  GVEPN   Y  ++  +C +  +  + R      
Sbjct: 294 YGILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMV 353

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +  + +A + FDEM+ +G+  D  +++ +++   RA + +
Sbjct: 354 QRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELE 413

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L  M  + +     TY+ ++   C  G++ +A ++   MV+ GV P+  TY    
Sbjct: 414 EAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALT 473

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                + D   A +L  +M   GL + N  +YN LI        ++       D+  + L
Sbjct: 474 DGLCKQGDVQAANELLHEMSNKGLEL-NACTYNSLINGLCKAGYLEQAMRTMADMDTACL 532

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD+ +YT LI  LC+      A     EM++KG+ P  VT+  L  G   S  +   ++
Sbjct: 533 KPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKK 592

Query: 277 -----LKKKLDEESITFGSEFQNY 295
                L+K +   + T+ S  + Y
Sbjct: 593 LLDWMLEKNIHPNAATYNSLMKQY 616



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 128/279 (45%), Gaps = 16/279 (5%)

Query: 12  INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMR 71
           ++R+ + E    E+ +     NV +YN+LL  +C              +++A ++FDEM 
Sbjct: 239 LSRLPLDEAI--ELFQELPHKNVCSYNILLKALCDAGR----------VKDARQLFDEM- 285

Query: 72  VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIE 131
                PDV ++ I++H +    + + ++  L+ M   G+ P    Y+SVV  LC  G I 
Sbjct: 286 --ASAPDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWIS 343

Query: 132 DAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNIL 191
           DA  ++ +MV+  V      Y      +  + D   A + + +M+  GL    + +Y  +
Sbjct: 344 DALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGV-TYTTM 402

Query: 192 IGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 251
           I        ++   ++  ++    L  D  +YT+LI G C++ K  EA Q    M+++G+
Sbjct: 403 INGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGV 462

Query: 252 LPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
            P  VT+  L  GL +   ++    L  ++  + +   +
Sbjct: 463 TPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNA 501



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/207 (19%), Positives = 79/207 (38%), Gaps = 60/207 (28%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------------- 48
           YT+LI   CK   +D A   L EM+++G++P +VTYNVL+NG C                
Sbjct: 539 YTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWML 598

Query: 49  --SLHPSER----------FEKTIRNAEKVFDEMRVRGIEPD------------------ 78
             ++HP+             E  +++  +++  MR R + P+                  
Sbjct: 599 EKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMK 658

Query: 79  -----------------VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                             TS+S ++ + ++  +   + +  + M+++G+      Y   +
Sbjct: 659 EALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHDMRKEGLTAESDVYDFYI 718

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPS 148
               +   +E    L  E+V   +  S
Sbjct: 719 DLNFNEDNLESTLALCDELVEASIVKS 745


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 138/267 (51%), Gaps = 15/267 (5%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            YT+LI G CK   +D A   L EM + G++PN+ TYN ++NG+C+  +          I 
Sbjct: 882  YTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN----------IE 931

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             A K+  E    G+  D  +++ ++  Y ++ +   + + L  M  KG+ PT+ T++ ++
Sbjct: 932  EAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLM 991

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               C  G +ED E+LL  M+  G+ P+A T+NC  K+Y  R +   A  +Y+ M   G+ 
Sbjct: 992  NGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGV- 1050

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             P+  +Y  L+        M     ++ ++KG G    + +Y++LI G  +++K+ EA +
Sbjct: 1051 EPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEARE 1110

Query: 242  YFVEMIEKGLLPQKVTF----ETLYRG 264
             F +M   GL   K  F    +T Y+G
Sbjct: 1111 IFDQMRRDGLAADKEIFDFFSDTKYKG 1137



 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 134/263 (50%), Gaps = 11/263 (4%)

Query: 1    MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
            +YT+L+ G+CK   I  A +F  EM  R + P+V+TY  +++G C+   +          
Sbjct: 776  VYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM---------- 825

Query: 61   RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              A K+F EM  RG+EPD+ +F+ +++ Y +A   + +    N M + G  P V TY+++
Sbjct: 826  VEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTL 885

Query: 121  VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
            +  LC  G ++ A ELL EM + G+ P+  TYN          +   A+KL  + +  GL
Sbjct: 886  IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 945

Query: 181  CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
                + +Y  L+  +     MD  +EI  ++ G GL P + ++ +L++G C     ++  
Sbjct: 946  NADTV-TYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 1004

Query: 241  QYFVEMIEKGLLPQKVTFETLYR 263
            +    M+ KG+ P   TF  L +
Sbjct: 1005 KLLNWMLAKGIAPNATTFNCLVK 1027



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 16/299 (5%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y S+I   C+I ++  AE    EMI +G+ P+ + Y  L++G C+R            IR
Sbjct: 742  YGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGD----------IR 791

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             A K F EM  R I PDV +++ ++  + +      +    + M  +G+ P + T++ ++
Sbjct: 792  AASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELM 851

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               C  G I+DA  +   M++ G  P+  TY           D + A +L  +M + GL 
Sbjct: 852  NGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL- 910

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             PN+ +YN ++        ++   ++  + + +GL  D  +YT L+   C+  +  +A +
Sbjct: 911  QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 970

Query: 242  YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGSEFQNY 295
               EM+ KGL P  VTF  L  G     ML    +     L K +   + TF    + Y
Sbjct: 971  ILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQY 1029



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 135/294 (45%), Gaps = 11/294 (3%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            +T L+ G+CK   I  A R    MI+ G  PNVVTY  L++G+C+   L           
Sbjct: 847  FTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLD---------- 896

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            +A ++  EM   G++P++ +++ +++   ++   + ++  +   +  G+     TY++++
Sbjct: 897  SANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM 956

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               C  G ++ A+E+L EM+  G+ P+  T+N     +          KL   M   G+ 
Sbjct: 957  DAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIA 1016

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             PN  ++N L+  +   N +     I+ D+   G+ PD  +Y  L+ G C  +  KEA  
Sbjct: 1017 -PNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWF 1075

Query: 242  YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
             F EM  KG      T+  L +G  +       R +  ++  + +    E  ++
Sbjct: 1076 LFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFDF 1129



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 125/265 (47%), Gaps = 11/265 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N+   A     E  E GV  NV +YN++++ VC+             I  A  +   M +
Sbjct: 648 NKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGR----------INEAHHLLLLMEL 697

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           +G  PDV S+S V++ Y R  +       +  MK+KG+ P   TY S++  LC   ++ +
Sbjct: 698 KGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAE 757

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           AEE   EM+  G+ P    Y      +  R D   A K + +M    +  P++ +Y  +I
Sbjct: 758 AEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDI-TPDVLTYTAII 816

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
             F  +  M    ++++++   GL PD+ ++T L++G C+    K+A +    MI+ G  
Sbjct: 817 SGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCS 876

Query: 253 PQKVTFETLYRGLIQSDMLRTWRRL 277
           P  VT+ TL  GL +   L +   L
Sbjct: 877 PNVVTYTTLIDGLCKEGDLDSANEL 901



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 130/292 (44%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           Y  +I+  C++ RI+ A   L  M  +G  P+V++Y+ ++NG CR               
Sbjct: 672 YNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMK 731

Query: 47  RASLHPSERFEKTI----------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +  L P+     +I            AE+ F EM  +GI PD   ++ ++  + +    +
Sbjct: 732 QKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIR 791

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      M  + I P V TY++++   C  G + +A +L  EM+  G+ P   T+    
Sbjct: 792 AASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELM 851

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y        A +++  M + G C PN+ +Y  LI        +D   E+ +++   GL
Sbjct: 852 NGYCKAGHIKDAFRVHNHMIQAG-CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 910

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            P++ +Y  +++GLC+    +EA +   E    GL    VT+ TL     +S
Sbjct: 911 QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 962



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 116/239 (48%), Gaps = 7/239 (2%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSR-AHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           A KVF++M   G+   V S ++ L   S+  ++   ++       E G+C  VA+Y+ V+
Sbjct: 617 ARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIVFREFPEVGVCWNVASYNIVI 676

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  GRI +A  LL  M   G  P   +Y+     Y    + +   KL  +MK+ GL 
Sbjct: 677 HFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGL- 735

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN ++Y  +IG+   + ++    E ++++ G G+ PD   YT L+ G C++   + A +
Sbjct: 736 KPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASK 795

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ-SDMLRTWR----RLKKKLDEESITFGSEFQNY 295
           +F EM  + + P  +T+  +  G  Q  DM+   +     L + L+ + ITF      Y
Sbjct: 796 FFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGY 854



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y +L+ G C    +  A     EM  +G   +V TY+VL+ G  +R          K   
Sbjct: 1057 YENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKR----------KKFV 1106

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN 103
             A ++FD+MR  G+  D   F        +  +P   +D ++
Sbjct: 1107 EAREIFDQMRRDGLAADKEIFDFFSDTKYKGKRPDTIVDPID 1148


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 5/276 (1%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G C  +RI  A      M + G  PN +TY  L+ G+CR  ++  + +  + + 
Sbjct: 169 YTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEML 228

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N   ++        +P V S+SI++    +  +   + D    MK +G+ PTV +Y+S++
Sbjct: 229 NDSSLYG----INFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLI 284

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+ E+A+ L  EMV  GV P+  T+N              A  L   M + G+ 
Sbjct: 285 HGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGI- 343

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN+ +YN LI  F  +  ++  RE++  +   G  PD+  YT+LI+G C+  K +EA +
Sbjct: 344 VPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMK 403

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            +  M++ G  P   T+  L  GL Q   +   ++L
Sbjct: 404 LYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKL 439



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 144/295 (48%), Gaps = 26/295 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRAS-LHPSERFEKTI 60
           YTSLI+G+C   + + A+R   EM+ +GV+PNVVT+NVL++ +C+    +   +  E  I
Sbjct: 280 YTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMI 339

Query: 61  R------------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +                        +A ++F  M  +G EPDV  ++++++ Y +  + +
Sbjct: 340 QRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVE 399

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++   N M + G  P V TY +++  L   G++ DA++L G M   G+      Y  F 
Sbjct: 400 EAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFL 459

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      AM+L+ ++K   + + ++  +N LI       +++   E++  +    L
Sbjct: 460 NGLCKNGCLFEAMELFNKLKSYNIKL-DIECFNCLIDGLCKAGKLETAWELFEKLPQEEL 518

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
            PD+ +Y ++IH  C   +  +A   F +M + G  P K+T+ TL RG  +S  L
Sbjct: 519 QPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKL 573



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 130/265 (49%), Gaps = 17/265 (6%)

Query: 4   SLIYGWCKINRIDMAE--RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           S+    CK   I   +  +F   M+     P + ++  LL+G+ +    H S+ F     
Sbjct: 64  SMFLHNCKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIK--HYSQVF----- 116

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               ++++MR+ GI PD  + +I+L+     ++    L  +  +  +G  P + TY++++
Sbjct: 117 ---YLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLI 173

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC   RI  A  L   M + G  P+A TY    K      + + A+KL+++M  D   
Sbjct: 174 KGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSL 233

Query: 182 V-----PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
                 P + SY+I+I       R D  R+++ ++K  G+ P + SYT LIHG C   KW
Sbjct: 234 YGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKW 293

Query: 237 KEACQYFVEMIEKGLLPQKVTFETL 261
           +EA + F EM+ +G+ P  VTF  L
Sbjct: 294 EEAKRLFNEMVNQGVQPNVVTFNVL 318



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 7/209 (3%)

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIE--DAEELLGEMVRNG 144
           H  S  H   L++   NF         ++ +       C  G I    A +    M+ + 
Sbjct: 36  HFSSAVHHKSLNVSPQNFNTPISFQQQLSMFLHN----CKTGNITATQAFQFFHLMMYSN 91

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
             P   ++          K  +    LY QM+  G+  P+  + NIL+     +NR+   
Sbjct: 92  PTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGIS-PDCCTLNILLNCLCNVNRVGEG 150

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             +   +   G  PD+ +YT LI GLC + +  +A   F  M + G  P  +T+ TL +G
Sbjct: 151 LAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKG 210

Query: 265 LIQSDMLRTWRRLKKKLDEESITFGSEFQ 293
           L ++  +    +L +++  +S  +G  F+
Sbjct: 211 LCRTGNISIALKLHQEMLNDSSLYGINFK 239



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/201 (19%), Positives = 89/201 (44%), Gaps = 25/201 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G+CK ++++ A +    M++ G  P+V TY  LL G+ +   +  +++    ++
Sbjct: 385 YTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMK 444

Query: 62  -------------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     A ++F++++   I+ D+  F+ ++    +A + +
Sbjct: 445 VYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLE 504

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + +    + ++ + P V TY+ ++   C  G++  A  L  +M +NG  P   TY    
Sbjct: 505 TAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLI 564

Query: 157 KEYRGRKDANGAMKLYRQMKE 177
           + +   K     ++L   M +
Sbjct: 565 RGFFESKKLEKVVELLHMMVQ 585



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 69/145 (47%), Gaps = 10/145 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y   + G CK   +  A     ++    ++ ++  +N L++G+C+   L          
Sbjct: 454 IYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKL---------- 503

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++F+++    ++PDV +++I++H + R  Q   +      M++ G  P   TY+++
Sbjct: 504 ETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATL 563

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGV 145
           ++      ++E   ELL  MV+  V
Sbjct: 564 IRGFFESKKLEKVVELLHMMVQRDV 588


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 139/266 (52%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G C   +++ A     +M+   ++PN++T+N LLNG C+           K ++
Sbjct: 274 YNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCK----------NKMVK 323

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++FD+M  +GI P+VT+++I++  Y +    + +      M  KG+CP V+TY+ ++
Sbjct: 324 QAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLI 383

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +E A  L+ EM    +     TYN        + +   A++L  +M   GL 
Sbjct: 384 AGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGL- 442

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN +I  +     +     + + ++  G   ++ +Y +LI G C+K K ++A  
Sbjct: 443 KPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANG 502

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
              EM+EKGL+P ++T+E +   +++
Sbjct: 503 LLNEMLEKGLIPNRMTYEIVTEEMME 528



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 147/317 (46%), Gaps = 43/317 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +I G CK+ +++ A   + +M  RGV  NV+TYN L++G C+   +         + 
Sbjct: 166 FNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGK-------MY 218

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +  EMR  GI P+  +F+I++  + +      ++     M  +G+ P V TY+S++
Sbjct: 219 KADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLI 278

Query: 122 KCLCSCGRIEDAE-----------------------------------ELLGEMVRNGVC 146
             LC+ G++ +A                                    EL  +M + G+ 
Sbjct: 279 NGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGIT 338

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+  TYN     Y   ++   A  LYR M   G+C P++ +YN LI        ++  R 
Sbjct: 339 PNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVC-PDVSTYNCLIAGLCRKGDLEAARN 397

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           + +++    L  DL +Y +LI  LC K + K+A +   EM  KGL P ++T+ T+  G  
Sbjct: 398 LVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYC 457

Query: 267 QSDMLRTWRRLKKKLDE 283
           +   LR    L+ ++++
Sbjct: 458 KEGNLRAALNLRSQMEK 474



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 132/285 (46%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI G+CK   +  A +   EM  +GV+PNVVTYN L+NG+C    ++          
Sbjct: 239 FNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNE--------- 289

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D+M    ++P++ + + +L+ + +    + + +  + M ++GI P V TY+ ++
Sbjct: 290 -ATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILI 348

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    +EDA  L   M+  GVCP   TYNC       + D   A  L  +M    L 
Sbjct: 349 DAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHL- 407

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++ +YNILI        M     + +++   GL P   +Y  +I G C++   + A  
Sbjct: 408 KADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALN 467

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              +M + G L    T+  L +G  + D L     L  ++ E+ +
Sbjct: 468 LRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGL 512



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 132/260 (50%), Gaps = 14/260 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L++ + K  R  +         + G++ +V + N L++G+ +             I + E
Sbjct: 99  LVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGE----------IGDME 148

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            V+ EM  R IEP + SF+IV++   +  +   + D +  MK +G+   V TY++++   
Sbjct: 149 FVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGY 208

Query: 125 CSCGRIE---DAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           C  G+I     A+ +L EM  +G+CP+  T+N     +   K+ + AMK++ +M   G+ 
Sbjct: 209 CKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGV- 267

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN LI       +++    + + +  S L P++ ++  L++G C+ +  K+A +
Sbjct: 268 KPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGE 327

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F +M ++G+ P   T+  L
Sbjct: 328 LFDDMPKQGITPNVTTYNIL 347



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 10/133 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI   C    +  A R L EM  +G++P+ +TYN +++G C+          E  +R
Sbjct: 414 YNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCK----------EGNLR 463

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +M   G   +V ++++++  + +  + + +   LN M EKG+ P   TY  V 
Sbjct: 464 AALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVT 523

Query: 122 KCLCSCGRIEDAE 134
           + +   G + D E
Sbjct: 524 EEMMEKGFVPDIE 536


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 146/298 (48%), Gaps = 22/298 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+   CK +    A + L EM  +G  P+++TYNV++NG+C+   +  +  F K++ 
Sbjct: 194 YTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLP 253

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +           G EP+  S++IVL     A + + +   +  M +KG  P V T++ ++
Sbjct: 254 S----------HGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLI 303

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +E A E+L ++ + G  P++ +YN     +  +K  + AM     M   G C
Sbjct: 304 SFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRG-C 362

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SYN L+        +D   E+ + +K  G  P L SY  +I GL +  K KEA +
Sbjct: 363 YPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALE 422

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
              EM+ KGL P  +T+ T+  GL + D +           EE+I    + Q+   +P
Sbjct: 423 LLNEMVTKGLQPDIITYSTISSGLCREDRI-----------EEAIRAFCKVQDMGIRP 469



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 138/286 (48%), Gaps = 14/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G+C   ++D A R + +M    +EP+  TYN L+ G+C R              
Sbjct: 127 YNAMVAGYCVTGQLDAARRLVADM---PMEPDSYTYNTLIRGLCGRGRTG---------- 173

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA  V D+M  RG  PDV +++I+L    +    + ++  L+ M+ KG  P + TY+ VV
Sbjct: 174 NALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVV 233

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  GR++DA E L  +  +G  P+  +YN   K     +    A KL  +M + G  
Sbjct: 234 NGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGY- 292

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ ++N+LI        ++   E+ + +   G  P+  SY  ++H  C+++K   A  
Sbjct: 293 PPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMA 352

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +   M+ +G  P  V++ TL   L +   +     L  +L ++  T
Sbjct: 353 FVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCT 398



 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 135/266 (50%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++ G C+  R+D A  FL  +   G EPN V+YN++L G+C       +ER+E    
Sbjct: 229 YNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCT------AERWE---- 278

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AEK+  EM  +G  P+V +F++++    R    + +++ L+ + + G  P   +Y+ ++
Sbjct: 279 DAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPIL 338

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   +++ A   +  MV  G  P   +YN          + + A++L  Q+K+ G C
Sbjct: 339 HAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKG-C 397

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + SYN +I       +     E+ N++   GL PD+ +Y+ +  GLC + + +EA +
Sbjct: 398 TPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIR 457

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
            F ++ + G+ P  V +  +  GL +
Sbjct: 458 AFCKVQDMGIRPNTVLYNAILLGLCK 483



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 141/290 (48%), Gaps = 28/290 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  ++ G C   R + AE+ + EM ++G  PNVVT+N+L++ +CRR  + P+        
Sbjct: 264 YNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIP 323

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +K +  A    + M  RG  PD+ S++ +L    R  +  
Sbjct: 324 KYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVD 383

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +++ L+ +K+KG  P + +Y++V+  L   G+ ++A ELL EMV  G+ P   TY+   
Sbjct: 384 AAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTIS 443

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN-ILIGMFMALNRMDMVREIWNDVKGSG 215
                      A++ + ++++ G+  PN   YN IL+G+       + + +++  +  +G
Sbjct: 444 SGLCREDRIEEAIRAFCKVQDMGI-RPNTVLYNAILLGLCKRRETHNAI-DLFIYMISNG 501

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
             P+  +YT+LI GL  +   KEA +   E+  +G++ + +  +   R L
Sbjct: 502 CMPNESTYTILIEGLTYEGLVKEARELLGELCSRGVVSKGLINKAAIRLL 551


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 145/302 (48%), Gaps = 11/302 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+C++  +  A     +M  R + P+ +TYN L+NG+C+           + +
Sbjct: 371 IYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKL----------EMV 420

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE +  EM   G++P V +F+ ++  Y  A Q +     L+ M++KGI   V ++ SV
Sbjct: 421 TKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSV 480

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           VK  C  G+I +A  +L +M+   V P+A+ YN     Y    D   A  L  +MK  G+
Sbjct: 481 VKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGV 540

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              ++ +YN+L+      +++D   E+   ++  GL PD+ SY  +I   C K    +A 
Sbjct: 541 SA-SIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKAL 599

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
           +   EM + G+ P   T+ TL   L  +  +     L +++  +++   S         Y
Sbjct: 600 ELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAY 659

Query: 301 RR 302
            R
Sbjct: 660 VR 661



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 133/301 (44%), Gaps = 44/301 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G  K   ++   R   +M+  G +PN+VTYNVLL+G+CR      + R ++T  
Sbjct: 232 YNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCR------AGRMDET-- 283

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + DEM    + PD  ++SI+    +R  + +  L       +KG+     T S ++
Sbjct: 284 --RVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILL 341

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
             LC  G++  AE++L  +V  G+ P+   YN     Y   +D  GA  ++ QMK     
Sbjct: 342 NGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIR 401

Query: 178 ----------DGLCV--------------------PNMHSYNILIGMFMALNRMDMVREI 207
                     +GLC                     P++ ++N LI  +    +++    +
Sbjct: 402 PDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTV 461

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            +D++  G+  D+ S+  ++   C+  K  EA     +MI K + P    + ++    I+
Sbjct: 462 LSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIE 521

Query: 268 S 268
           S
Sbjct: 522 S 522



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 10/189 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y S+I  + +    + A   + +M   GV  ++VTYN+LL G+CR + +  +E    T+
Sbjct: 511 VYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTL 570

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           RN          +G+ PDV S++ ++           +L+ L  M + GI PT+ TY ++
Sbjct: 571 RN----------QGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTL 620

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  L S GR+ D E L  +M+   V PS+  Y      Y   ++ +    L ++M E G+
Sbjct: 621 VSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGI 680

Query: 181 CVPNMHSYN 189
              +    N
Sbjct: 681 AFDDTKRSN 689



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 120/274 (43%), Gaps = 11/274 (4%)

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
           E    P+  +YNV++ G+ R               +A KVFDEM   G+ P+  +++ ++
Sbjct: 187 EGAPPPDAFSYNVVIAGLWRSGK----------GSDALKVFDEMVDMGVVPNWITYNTMI 236

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
             + +    +      + M   G  P + TY+ ++  LC  GR+++   L+ EM  + + 
Sbjct: 237 DGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMF 296

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P   TY+  F       ++   + L+ +  + G+ +   ++ +IL+       ++    +
Sbjct: 297 PDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVML-GAYTCSILLNGLCKDGKVAKAEQ 355

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +   +  +GL P    Y  LI+G C+ +  + A   F +M  + + P  +T+  L  GL 
Sbjct: 356 VLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLC 415

Query: 267 QSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
           + +M+     L  ++++  +    E  N     Y
Sbjct: 416 KLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAY 449


>gi|225424625|ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial [Vitis vinifera]
 gi|296081374|emb|CBI16807.3| unnamed protein product [Vitis vinifera]
          Length = 519

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/293 (32%), Positives = 146/293 (49%), Gaps = 21/293 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SLI G+C+   ID A+  +  M   G EP++VTYNVLLN  C    L  +E   K  
Sbjct: 221 IYNSLINGFCQAGWIDKAQSIISFMRRNGCEPDLVTYNVLLNYCCDELLLEEAENLMK-- 278

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK-----LNFMKEKGICPTVA 115
                   +M   G+EPDV S++ +L    +A++    LDK     +N M+ KG+C  V 
Sbjct: 279 --------KMERSGVEPDVYSYNELLKGLCKANR----LDKAYMMMVNKMEAKGLCDVV- 325

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           +Y++++K LC+    + A +L  EM   G+ P   T+    K +     +N A KL  QM
Sbjct: 326 SYNTIIKALCTASHTKRAYKLFEEMGGKGITPDVVTFTILIKAFLREGSSNIAKKLLDQM 385

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
              GL +P+   Y  ++       +M M   ++ D+  SG+ PD+ SY  LI+GLC   +
Sbjct: 386 TGLGL-LPDRVLYTTIVDHLCKTGKMGMAHSVFCDMVESGITPDVVSYNALINGLCRASR 444

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
             EA   + +M   G  P +VTF+ +  GLI    L    R+  ++ E+  T 
Sbjct: 445 VSEAMHLYEDMHTGGPCPDEVTFKLIIGGLIWEKKLSVACRVWDQMMEKGFTL 497



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 11/218 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+ G CK NR+D A   +   +E     +VV+YN ++  +C  +            +
Sbjct: 292 YNELLKGLCKANRLDKAYMMMVNKMEAKGLCDVVSYNTIIKALCTASH----------TK 341

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F+EM  +GI PDV +F+I++  + R     ++   L+ M   G+ P    Y+++V
Sbjct: 342 RAYKLFEEMGGKGITPDVVTFTILIKAFLREGSSNIAKKLLDQMTGLGLLPDRVLYTTIV 401

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++  A  +  +MV +G+ P   +YN            + AM LY  M   G C
Sbjct: 402 DHLCKTGKMGMAHSVFCDMVESGITPDVVSYNALINGLCRASRVSEAMHLYEDMHTGGPC 461

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
            P+  ++ ++IG  +   ++ +   +W+ +   G   D
Sbjct: 462 -PDEVTFKLIIGGLIWEKKLSVACRVWDQMMEKGFTLD 498



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 131/286 (45%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+  I G CK+    + E+ L +M   G  P++  YN+ LN +C           E  + 
Sbjct: 82  YSRFISGLCKVKNFVLIEKLLEDMDRLGYVPDIWAYNIYLNLLC----------CENQLD 131

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V   M  +G EPD+ +++IV++   RA +   +++    M  KG  P      ++V
Sbjct: 132 VALGVVQTMVEKGREPDIVTYTIVINGLCRAGRFDSAVEIWRNMVRKGFSPDEKACRALV 191

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+++ A EL    +R  +  S   YN     +      + A  +   M+ +G C
Sbjct: 192 LGLCHDGKVDLAYELTVGAMRGRIKFSKSIYNSLINGFCQAGWIDKAQSIISFMRRNG-C 250

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN+L+        ++    +   ++ SG+ PD+ SY  L+ GLC+  +  +A  
Sbjct: 251 EPDLVTYNVLLNYCCDELLLEEAENLMKKMERSGVEPDVYSYNELLKGLCKANRLDKAYM 310

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             V  +E   L   V++ T+ + L  +   +   +L +++  + IT
Sbjct: 311 MMVNKMEAKGLCDVVSYNTIIKALCTASHTKRAYKLFEEMGGKGIT 356



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 82/209 (39%), Gaps = 1/209 (0%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           I  A K FDEM           ++  + V  R  +  L+    + M  +G      TYS 
Sbjct: 25  IDQALKTFDEMTKSNCRVFSIDYNRFIGVLVRQSRFDLAEQYYDRMIPQGFSLNSFTYSR 84

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
            +  LC        E+LL +M R G  P    YN +          + A+ + + M E G
Sbjct: 85  FISGLCKVKNFVLIEKLLEDMDRLGYVPDIWAYNIYLNLLCCENQLDVALGVVQTMVEKG 144

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              P++ +Y I+I       R D   EIW ++   G  PD  +   L+ GLC   K   A
Sbjct: 145 R-EPDIVTYTIVINGLCRAGRFDSAVEIWRNMVRKGFSPDEKACRALVLGLCHDGKVDLA 203

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            +  V  +   +   K  + +L  G  Q+
Sbjct: 204 YELTVGAMRGRIKFSKSIYNSLINGFCQA 232


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 145/302 (48%), Gaps = 11/302 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+C++  +  A     +M  R + P+ +TYN L+NG+C+           + +
Sbjct: 193 IYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKL----------EMV 242

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE +  EM   G++P V +F+ ++  Y  A Q +     L+ M++KGI   V ++ SV
Sbjct: 243 TKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSV 302

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           VK  C  G+I +A  +L +M+   V P+A+ YN     Y    D   A  L  +MK  G+
Sbjct: 303 VKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGV 362

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              ++ +YN+L+      +++D   E+   ++  GL PD+ SY  +I   C K    +A 
Sbjct: 363 SA-SIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKAL 421

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
           +   EM + G+ P   T+ TL   L  +  +     L +++  +++   S         Y
Sbjct: 422 ELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAY 481

Query: 301 RR 302
            R
Sbjct: 482 VR 483



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 132/301 (43%), Gaps = 44/301 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G  K   ++   R   +M+  G +PN+VTYNVLL+G+CR        R ++T  
Sbjct: 54  YNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAG------RMDET-- 105

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + DEM    + PD  ++SI+    +R  + +  L       +KG+     T S ++
Sbjct: 106 --RVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILL 163

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
             LC  G++  AE++L  +V  G+ P+   YN     Y   +D  GA  ++ QMK     
Sbjct: 164 NGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIR 223

Query: 178 ----------DGLCV--------------------PNMHSYNILIGMFMALNRMDMVREI 207
                     +GLC                     P++ ++N LI  +    +++    +
Sbjct: 224 PDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTV 283

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            +D++  G+  D+ S+  ++   C+  K  EA     +MI K + P    + ++    I+
Sbjct: 284 LSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIE 343

Query: 268 S 268
           S
Sbjct: 344 S 344



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 10/189 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y S+I  + +    + A   + +M   GV  ++VTYN+LL G+CR + +  +E    T+
Sbjct: 333 VYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTL 392

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           RN          +G+ PDV S++ ++           +L+ L  M + GI PT+ TY ++
Sbjct: 393 RN----------QGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTL 442

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  L S GR+ D E L  +M+   V PS+  Y      Y   ++ +    L ++M E G+
Sbjct: 443 VSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGI 502

Query: 181 CVPNMHSYN 189
              +    N
Sbjct: 503 AFDDTKRSN 511



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 119/269 (44%), Gaps = 11/269 (4%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
           P+  +YNV++ G+ R               +A KVFDEM   G+ P+  +++ ++  + +
Sbjct: 14  PDAFSYNVVIAGLWRSGKG----------SDALKVFDEMVDMGVVPNWITYNTMIDGHVK 63

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
               +      + M   G  P + TY+ ++  LC  GR+++   L+ EM  + + P   T
Sbjct: 64  GGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFT 123

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           Y+  F       ++   + L+ +  + G+ +   ++ +IL+       ++    ++   +
Sbjct: 124 YSILFDGLTRTGESRTMLSLFAESLKKGVML-GAYTCSILLNGLCKDGKVAKAEQVLEML 182

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
             +GL P    Y  LI+G C+ +  + A   F +M  + + P  +T+  L  GL + +M+
Sbjct: 183 VHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMV 242

Query: 272 RTWRRLKKKLDEESITFGSEFQNYHFKPY 300
                L  ++++  +    E  N     Y
Sbjct: 243 TKAEDLVMEMEKSGVDPSVETFNTLIDAY 271


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 154/293 (52%), Gaps = 18/293 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T L+   CK   +  A      M E+GVEPN+ TYN L+NG C R  ++          
Sbjct: 194 FTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMN---------- 243

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A KVF+ M  +G  P V S+SI+++ Y ++ +   +   L  M EK + P   TY++++
Sbjct: 244 DASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLM 303

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC    + +A+EL  +M  +G+ P+  TY+              A+KL   M+E  L 
Sbjct: 304 QGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKL- 362

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            P++  YNILI GMF+A  ++++ +E+++ +  +G+ P + +Y ++I GL ++    EA 
Sbjct: 363 EPDIVLYNILIQGMFIA-GKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAY 421

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITF 288
           + F +M + G LP   ++  + +G +Q+    T  +L      ++   +S TF
Sbjct: 422 KLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTF 474



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 136/277 (49%), Gaps = 11/277 (3%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI   C+++ I  A   L +M + G++P+ VT+  L+NG+C           E  I+ A 
Sbjct: 127 LINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCN----------EGRIKEAV 176

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           ++F+EM  R   P+  +F+I++ V  +      +      M EKG+ P + TY++++   
Sbjct: 177 ELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGY 236

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C    + DA ++   MV  G  PS  +Y+     Y   +  + A  L  QM E  L +PN
Sbjct: 237 CLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKEL-IPN 295

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
             +YN L+      + +   +E++  +  SG+ P+L +Y++L+ GLC+    +EA +   
Sbjct: 296 TVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLT 355

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            M E+ L P  V +  L +G+  +  L   + L  KL
Sbjct: 356 SMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKL 392



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 124/226 (54%), Gaps = 11/226 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G+CK  RID A+  L +M E+ + PN VTYN L+ G+C  +SL           
Sbjct: 264 YSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSL----------L 313

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++F +M   G+ P++ ++SI+L    +    + +L  L  M+E+ + P +  Y+ ++
Sbjct: 314 EAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILI 373

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + +   G++E A+EL  ++  NG+ PS  TYN   K       ++ A KL+R+M++DG  
Sbjct: 374 QGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGF- 432

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           +P+  SYN++I  F+         ++ +++ G     D  ++ ML+
Sbjct: 433 LPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTFKMLL 478



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 139/283 (49%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G C   RI  A     EM  R   PN VT+ +L++ +C++            + 
Sbjct: 159 FTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKKG----------MVS 208

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  VF+ M  +G+EP++ +++ +++ Y    +   +      M  KG  P+V +YS ++
Sbjct: 209 EARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILI 268

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI++A+ LL +M    + P+  TYN   +          A +L+++M   G+ 
Sbjct: 269 NGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGM- 327

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+ +Y+IL+        ++   ++   ++   L PD+  Y +LI G+    K + A +
Sbjct: 328 LPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKE 387

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F ++   G+ P   T+  + +GL++  +     +L +K++++
Sbjct: 388 LFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDD 430



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 119/258 (46%), Gaps = 11/258 (4%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           GV  N  T N+L+N +CR + +H           A  V  +M   GI+PD  +F+ +++ 
Sbjct: 116 GVAHNDYTLNILINSLCRLSHIH----------FAVSVLSKMFKLGIQPDSVTFTTLING 165

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
                + + +++  N M  +   P   T++ +V  LC  G + +A  +   M   GV P+
Sbjct: 166 LCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPN 225

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             TYN     Y  R + N A K++  M   G C P++HSY+ILI  +    R+D  + + 
Sbjct: 226 IYTYNALMNGYCLRLEMNDASKVFEIMVGKG-CAPSVHSYSILINGYCKSRRIDEAKALL 284

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             +    L P+  +Y  L+ GLC      EA + F +M   G+LP   T+  L  GL + 
Sbjct: 285 TQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKH 344

Query: 269 DMLRTWRRLKKKLDEESI 286
             L    +L   + E  +
Sbjct: 345 GHLEEALKLLTSMQERKL 362



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 125/267 (46%), Gaps = 11/267 (4%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           ID A      MI     P+ V     L  + ++          K       + ++M + G
Sbjct: 67  IDDAMASFYRMIHMNPRPSFVELGKFLGSIAKK----------KQYSTVVSLCNQMDLFG 116

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           +  +  + +I+++   R      ++  L+ M + GI P   T+++++  LC+ GRI++A 
Sbjct: 117 VAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAV 176

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           EL  EM      P+  T+         +   + A  ++  M E G+  PN+++YN L+  
Sbjct: 177 ELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGV-EPNIYTYNALMNG 235

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
           +     M+   +++  + G G  P + SY++LI+G C+ ++  EA     +M EK L+P 
Sbjct: 236 YCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPN 295

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKKL 281
            VT+ TL +GL  +  L   + L KK+
Sbjct: 296 TVTYNTLMQGLCHASSLLEAQELFKKM 322



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/142 (19%), Positives = 65/142 (45%), Gaps = 17/142 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI G     ++++A+    ++   G+ P+V TYN+++ G+ +          E   
Sbjct: 368 LYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLK----------EGLS 417

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+F +M   G  PD  S+++++  + +   P  ++  ++ M  +      +T+  +
Sbjct: 418 DEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTFKML 477

Query: 121 VKCLCSCGRIEDAEELLGEMVR 142
           +        +E  +E++   +R
Sbjct: 478 LD-------LESHDEIISRFMR 492


>gi|125542844|gb|EAY88983.1| hypothetical protein OsI_10467 [Oryza sativa Indica Group]
          Length = 525

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 129/257 (50%), Gaps = 14/257 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ GW      + AE F+ EM E GVEP++VTYN L++  C+           + + 
Sbjct: 216 FNILLSGW---KSAEDAEAFVAEMRELGVEPDLVTYNSLIDCHCK----------NRGVE 262

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA K+ DEMR + I PDV +++ ++       QP  +   L  M E G  P V  Y++ +
Sbjct: 263 NAYKLLDEMREKDISPDVITYTSLIGGLGLIGQPDKAKHLLKEMHELGCYPDVPAYNTAI 322

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +      R+ DA  L+ EM   G+ P+A TYN FF+ Y    D   A +LY +M+ +G C
Sbjct: 323 RNFVIAKRLGDAFALMEEMASKGLMPNATTYNLFFRCYYWAYDIGSAWQLYERMRSEG-C 381

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  S   ++ +     R+    E+W+D+  +G G       +L   LC++ K  EA +
Sbjct: 382 FPNTQSCMFIVRLCHRHGRVAQALELWSDMVNNGFGSFTLVSDVLFDLLCDEGKLDEAER 441

Query: 242 YFVEMIEKGLLPQKVTF 258
            F +MIE G  P  V F
Sbjct: 442 CFHQMIELGQKPSNVAF 458



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 1/133 (0%)

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           EDAE  + EM   GV P   TYN     +   +    A KL  +M+E  +  P++ +Y  
Sbjct: 227 EDAEAFVAEMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEMREKDIS-PDVITYTS 285

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           LIG    + + D  + +  ++   G  PD+ +Y   I      ++  +A     EM  KG
Sbjct: 286 LIGGLGLIGQPDKAKHLLKEMHELGCYPDVPAYNTAIRNFVIAKRLGDAFALMEEMASKG 345

Query: 251 LLPQKVTFETLYR 263
           L+P   T+   +R
Sbjct: 346 LMPNATTYNLFFR 358



 Score = 43.9 bits (102), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 14/199 (7%)

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL------CSC 127
           G+ P   +    L+V  RA +     D L     + + P   T  + +  L      CS 
Sbjct: 99  GVAPSPFALDTALYVLGRARRFAHMWDLLR--SSRRLVPDAVTPRTAMVVLGRVAKVCSV 156

Query: 128 GRIEDAEELLGEMVRN-GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH 186
               D+   L  M+R  G     + +N   +     K  + A  +Y  +K +     N  
Sbjct: 157 RETVDSFRRLSRMLRGRGDDQEGQLFNALLRTLCQEKSMSDARNVYHALKYEFKV--NRQ 214

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
           ++NIL+  + +    +       +++  G+ PDL +Y  LI   C+ +  + A +   EM
Sbjct: 215 TFNILLSGWKSAEDAEA---FVAEMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEM 271

Query: 247 IEKGLLPQKVTFETLYRGL 265
            EK + P  +T+ +L  GL
Sbjct: 272 REKDISPDVITYTSLIGGL 290


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 142/285 (49%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI  +C+  R+D+A  +   MI+ G+   V  YN L+NG C+   L           
Sbjct: 403 YSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSA--------- 453

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE +F EM  +G+EP  T+F+ ++  Y +  Q Q +    N M + GI P V T+++++
Sbjct: 454 -AESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALI 512

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LCS  ++ +A EL  E+V   + P+  TYN   + Y      + A +L   M + GL 
Sbjct: 513 SGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGL- 571

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+ ++Y  LI    +  R+   ++  +D+    +  +   Y+ L+HG C++ +  EA  
Sbjct: 572 VPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALS 631

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EMI++G+    V    L  G ++    +T+  L K + ++ +
Sbjct: 632 ASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGL 676



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 137/284 (48%), Gaps = 11/284 (3%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           + L+ G  K  +ID A   + ++   G  PN+  YN L+N +C+   L            
Sbjct: 334 SGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLD----------K 383

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           AE ++  M +  + P+  ++SI++  + R+ +  +++   + M + GI  TV  Y+S++ 
Sbjct: 384 AELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLIN 443

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C  G +  AE L  EM   GV P+A T+      Y        A KLY +M ++G+  
Sbjct: 444 GQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGI-T 502

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN++++  LI    + N+M    E+++++    + P   +Y +LI G C   K  +A + 
Sbjct: 503 PNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFEL 562

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             +M +KGL+P   T+  L  GL  +  +   +     L ++++
Sbjct: 563 LEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNV 606



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 136/285 (47%), Gaps = 11/285 (3%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           ++++   C++     A+  +  M   G + ++VTYNVL++G+C+       +R    +  
Sbjct: 229 SAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCK------GDR----VSE 278

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A +V   +  +G+  DV ++  ++  + R  Q +  +  ++ M E G  PT A  S +V 
Sbjct: 279 AVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVD 338

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            L   G+I+DA EL+ ++ R G  P+   YN          D + A  LY  M    L  
Sbjct: 339 GLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNL-R 397

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN  +Y+ILI  F    R+D+    ++ +   G+G  + +Y  LI+G C+      A   
Sbjct: 398 PNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESL 457

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           F+EM  KG+ P   TF +L  G  +   ++   +L  K+ +  IT
Sbjct: 458 FIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGIT 502



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 129/263 (49%), Gaps = 12/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++L++G+C+  R+  A     EMI+RG+  ++V + VL++G  ++          KT  
Sbjct: 613 YSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPD-------RKTFF 665

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  K   +M  +G+ PD   ++ ++  YS+    + + +  + M  +   P V TY++++
Sbjct: 666 DLLK---DMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALM 722

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G ++ A  L   M    V P++ TY CF        +   A+ L+  M + GL 
Sbjct: 723 NGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLK-GL- 780

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N  ++NI+I  F  L R     ++ +++  +G+ PD  +Y+ LI+  C       + +
Sbjct: 781 LANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVK 840

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            +  M+ +GL P  V +  L  G
Sbjct: 841 LWDTMLNRGLEPDLVAYNLLIYG 863



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 100/219 (45%), Gaps = 12/219 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTS+I  + K      A      M+     PNVVTY  L+NG+C+   +          
Sbjct: 682 IYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMD--------- 732

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F  M+   + P+  ++   L   ++    + ++  L+    KG+     T++ +
Sbjct: 733 -RAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIG-LHHAMLKGLLANTVTHNII 790

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C  GR  +A ++L EM  NG+ P   TY+    EY    +   ++KL+  M   GL
Sbjct: 791 IRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGL 850

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
             P++ +YN+LI        +D   E+ +D+   G+ PD
Sbjct: 851 -EPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPD 888



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/334 (19%), Positives = 125/334 (37%), Gaps = 51/334 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+  +   +RI  A   +  M    + P V T + LLNG+ +           +   
Sbjct: 158 FNLLVQNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKV----------RKFI 207

Query: 62  NAEKVFDEMRVRGIEPD-----------------------------------VTSFSIVL 86
              ++FDE    G+ PD                                   + ++++++
Sbjct: 208 TVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLI 267

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
           H   +  +   +++    +  KG+   V TY ++V   C   + E   +L+ EMV  G  
Sbjct: 268 HGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFS 327

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+    +      R +   + A +L  ++   G  VPN+  YN LI        +D    
Sbjct: 328 PTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGF-VPNLFVYNALINSLCKGGDLDKAEL 386

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +++++    L P+  +Y++LI   C   +   A  YF  MI+ G+      + +L  G  
Sbjct: 387 LYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQC 446

Query: 267 QSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           +   L     L      K ++  + TF S    Y
Sbjct: 447 KFGDLSAAESLFIEMTNKGVEPTATTFTSLISGY 480


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 152/296 (51%), Gaps = 16/296 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI G+CK+ R++ A  ++ + I  G EP+ VTYN  ++G+C+             + +A 
Sbjct: 273 LINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGH----------VSHAL 322

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           KV D M   G +PDV +++ V++  S+  +   +   +N M ++G  P   T+++++  L
Sbjct: 323 KVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVAL 382

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
            S  R+E+A +L  E+   G+ P   T+N          D +  ++L+ +MK  G C P+
Sbjct: 383 SSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSG-CTPD 441

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
             +YNILI    ++ ++    ++ N+++ +G      +Y  +I  LC+K + +EA + F 
Sbjct: 442 EVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFD 501

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           +M  +G+    VTF TL  GL ++  +     L     K+ L   +IT+ S   +Y
Sbjct: 502 QMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHY 557



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 138/283 (48%), Gaps = 13/283 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI      NR++ A     E+  +G+ P+V T+N+L+N +C+    H   R      
Sbjct: 375 FNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRL----- 429

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP-TVATYSSV 120
                F+EM+  G  PD  +++I++       +   +LD LN M+  G CP +  TY+++
Sbjct: 430 -----FEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNG-CPRSTVTYNTI 483

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   RIE+AEE+  +M   G+  SA T+N         K  + A +L  QM ++GL
Sbjct: 484 IDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGL 543

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  +YN ++  +     +    +I   +  +G   D+ +Y  LI+GLC+  + + A 
Sbjct: 544 -QPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVAL 602

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           +    M  KG+ P    +  + + L + + LR    L +++ E
Sbjct: 603 KLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTE 645



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 128/277 (46%), Gaps = 13/277 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I    K   +D A+  + +M++RG  P+  T+N L+       +L    R E+ + 
Sbjct: 340 YNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLI------VALSSQNRLEEALD 393

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A     E+ V+G+ PDV +F+I+++   +   P L +     MK  G  P   TY+ ++
Sbjct: 394 LAR----ELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILI 449

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LCS G++ +A +LL EM  NG   S  TYN        +     A +++ QM   G+ 
Sbjct: 450 DHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGIS 509

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              + ++N LI       R+D   E+   +   GL P+  +Y  ++   C++   K+A  
Sbjct: 510 RSAV-TFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAAD 568

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
               M   G     VT+ TL  GL ++   RT   LK
Sbjct: 569 ILETMTANGFEIDVVTYGTLINGLCKAG--RTQVALK 603



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 122/270 (45%), Gaps = 12/270 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI   C + ++  A   L EM   G   + VTYN +++ +C++            I 
Sbjct: 445 YNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMR----------IE 494

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+VFD+M  +GI     +F+ ++    +A +   + + +  M ++G+ P   TY+S++
Sbjct: 495 EAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSIL 554

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G I+ A ++L  M  NG      TY               A+KL R M+  G+ 
Sbjct: 555 THYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGI- 613

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ-KWKEAC 240
            P   +YN +I      N +     ++ ++   G  PD  +Y ++   LC      KEA 
Sbjct: 614 RPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAF 673

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
            + VEM+ KG +P+  +F  L  GL+   M
Sbjct: 674 DFLVEMVNKGFMPEFSSFRMLAEGLLNLGM 703



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 125/281 (44%), Gaps = 14/281 (4%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIER---GVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           S +  + ++ R D A   +   ++    GV+ + V +N LLN +   + L          
Sbjct: 129 SFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKL---------- 178

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           +  E V++EM  RGI+PDV + + ++    RAHQ + ++  L  M   G+ P   T++++
Sbjct: 179 KLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTL 238

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++     G IE A  +  +M+  G  P+  T N     Y        A+   +Q   DG 
Sbjct: 239 MQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGF 298

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  +YN  +        +    ++ + +   G  PD+ +Y  +I+ L +  +  EA 
Sbjct: 299 -EPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAK 357

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
               +M+++G LP   TF TL   L   + L     L ++L
Sbjct: 358 GIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLAREL 398



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 91/192 (47%), Gaps = 3/192 (1%)

Query: 95  PQLSLDKLN-FMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           P+ +L  LN  +  +   P+ A Y  +V+ L + G  +  E L+ EM R G    A    
Sbjct: 69  PEAALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVR 128

Query: 154 CFFKEY-RGRKDANGAMKLYRQMKEDGLCV-PNMHSYNILIGMFMALNRMDMVREIWNDV 211
            F + Y R R+  +    +  Q+  D   V  +   +N L+ + +  +++ ++  ++N++
Sbjct: 129 SFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEM 188

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
            G G+ PD+ +   LI  LC   + + A     EM   G+ P + TF TL +G I+   +
Sbjct: 189 TGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSI 248

Query: 272 RTWRRLKKKLDE 283
               R+K K+ E
Sbjct: 249 EAALRVKAKMME 260


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 137/278 (49%), Gaps = 14/278 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+    ++D A     EM++RG++PNVVTY  +++G+C+           + + 
Sbjct: 206 YATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCK----------AQVVD 255

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE VF +M  +G++PD  +++ ++H Y    + +  +  L  M   G+ P   TY S++
Sbjct: 256 RAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLL 315

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+ GR  +A      M+R G+ P+   Y      Y  +   +    L   M E+GL 
Sbjct: 316 NYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLS 375

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ H +NI+   +     +D    I+N +K  GL PD+ ++  LI  LC+  +  +A  
Sbjct: 376 -PDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVL 434

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
            F +M+ +G+ P    F +L  GL   D    W + K+
Sbjct: 435 KFNQMMNEGVAPNIFVFNSLVYGLCTVD---KWEKAKE 469



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 130/292 (44%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH---------- 51
           Y SL+   C   R   A  F   MI +G++PNV  Y +L++G   + +L           
Sbjct: 311 YGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMV 370

Query: 52  -----PSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                P              +  I  A  +F++M+ +G+ PDV +F  ++    +  +  
Sbjct: 371 ENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVD 430

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++ K N M  +G+ P +  ++S+V  LC+  + E A+E   EM+  G+ P    +N   
Sbjct: 431 DAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTIL 490

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                +     A +L   M+  G   P++ SY  LIG    + R+D   +  + +   GL
Sbjct: 491 CNLCTKGQVMKAQRLIDLMERVG-TRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGL 549

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            PD  +Y  L+HG C   +  +A   F EM+  G+ P  VT+ T+  GL  +
Sbjct: 550 KPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTT 601



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 138/294 (46%), Gaps = 11/294 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ SL+YG C +++ + A+ F  EM+ +G+ P+VV +N +L  +C +            +
Sbjct: 450 VFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQ----------V 499

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++ D M   G  PDV S++ ++  +    +   +   L+ M   G+ P   TY+++
Sbjct: 500 MKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTL 559

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  GRI+DA  +  EM+RNG+ P   TY+         +  + A +LY  M   G 
Sbjct: 560 LHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGK 619

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              N+  YNI++      N +D   +++  +       ++ ++ ++I  L +  + ++A 
Sbjct: 620 -QWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAM 678

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
             F  +   GL+P   T+  +   LI+   L  +  L   +++   T  S   N
Sbjct: 679 HLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLN 732



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 128/284 (45%), Gaps = 9/284 (3%)

Query: 5   LIYGWCKINRIDMA-ERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           L+ G C   R+  A +  +  M E G  P+VV+YN LL G C        +R E+ +   
Sbjct: 135 LLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNE------KRAEEALELL 188

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             + D  + R   P+V S++ V++ +    Q   + +    M ++GI P V TY++V+  
Sbjct: 189 HMMADS-QGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDG 247

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC    ++ AE +  +M+  GV P  +TYNC    Y         +++  +M   GL  P
Sbjct: 248 LCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGL-KP 306

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           + ++Y  L+       R    R  ++ +   G+ P++  Y +LIHG   K    E     
Sbjct: 307 DCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLL 366

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             M+E GL P    F  ++    +  M+     +  K+ ++ ++
Sbjct: 367 NLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLS 410



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 137/305 (44%), Gaps = 15/305 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI  +C++ R++      G +++ G   N +  N LL G+C            K +R
Sbjct: 97  YSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCD----------AKRLR 146

Query: 62  NAEKVF-DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE---KGICPTVATY 117
            A  +    M   G  PDV S++ +L  +    + + +L+ L+ M +   +   P V +Y
Sbjct: 147 EAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSY 206

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           ++V+    + G+++ A  L  EM+  G+ P+  TY          +  + A  +++QM +
Sbjct: 207 ATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMID 266

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G+  P+  +YN LI  ++++ +   V  +  ++   GL PD  +Y  L++ LC   + +
Sbjct: 267 KGV-KPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCR 325

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
           EA  +F  MI KG+ P    +  L  G      L     L   + E  ++      N  F
Sbjct: 326 EARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIF 385

Query: 298 KPYRR 302
             Y +
Sbjct: 386 TAYAK 390



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 129/293 (44%), Gaps = 26/293 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSE-RFEKT 59
           ++  +   + K   ID A     +M ++G+ P+VV +  L++ +C+   +  +  +F + 
Sbjct: 380 IFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQM 439

Query: 60  IR------------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           +                          A++ + EM  +GI PDV  F+ +L       Q 
Sbjct: 440 MNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQV 499

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +   ++ M+  G  P V +Y++++   C  GRI++A + L  M+  G+ P   TYN  
Sbjct: 500 MKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTL 559

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y      + A  ++R+M  +G+  P + +Y+ ++       R    +E++ ++  SG
Sbjct: 560 LHGYCRAGRIDDAYGVFREMLRNGI-TPGVVTYSTILHGLFTTRRFSEAKELYLNMITSG 618

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
              ++  Y ++++GL +     EA + F  +  K    +  TF  +   L +S
Sbjct: 619 KQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKS 671



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 114/274 (41%), Gaps = 51/274 (18%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH-------QPQLSLDKLNFMKEK---G 109
           + +A K+FD +        + +F+ +L   SR         + +L +   N M  +    
Sbjct: 30  LDDALKLFDGLLTHARPASIIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIK 89

Query: 110 ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN--------------GVC--------- 146
           + P + TYS ++ C C  GR+E      G ++++              G+C         
Sbjct: 90  VTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAM 149

Query: 147 -------------PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG--LCVPNMHSYNIL 191
                        P   +YN   K +   K A  A++L   M +     C PN+ SY  +
Sbjct: 150 DILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATV 209

Query: 192 IGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 251
           I  F    ++D    ++ ++   G+ P++ +YT +I GLC+ Q    A   F +MI+KG+
Sbjct: 210 INGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGV 269

Query: 252 LPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
            P   T+  L  G +    +  W+ + + L+E S
Sbjct: 270 KPDNDTYNCLIHGYLS---IGKWKEVVRMLEEMS 300



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 92/201 (45%), Gaps = 25/201 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV--CRRAS---------L 50
           Y +L++G+C+  RID A     EM+  G+ P VVTY+ +L+G+   RR S         +
Sbjct: 556 YNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMI 615

Query: 51  HPSERFEKTIRN--------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
              +++   I N              A K+F  +  +  + ++T+F+I++    ++ + +
Sbjct: 616 TSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNE 675

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++     +   G+ P V TY  + + L   G +E+ ++L   M ++G  P++   N   
Sbjct: 676 DAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALV 735

Query: 157 KEYRGRKDANGAMKLYRQMKE 177
           +    R D   A     ++ E
Sbjct: 736 RRLLHRGDITRAGAYLSKLDE 756


>gi|115451461|ref|NP_001049331.1| Os03g0208600 [Oryza sativa Japonica Group]
 gi|26006498|gb|AAN77307.1| Hypothetical protein [Oryza sativa Japonica Group]
 gi|108706773|gb|ABF94568.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547802|dbj|BAF11245.1| Os03g0208600 [Oryza sativa Japonica Group]
          Length = 531

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 129/257 (50%), Gaps = 14/257 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ GW      + AE F+ EM E GVEP++VTYN L++  C+           + + 
Sbjct: 222 FNILLSGW---KSAEDAEAFVAEMRELGVEPDLVTYNSLIDCHCK----------NRGVE 268

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA K+ DEMR + I PDV +++ ++       QP  +   L  M E G  P V  Y++ +
Sbjct: 269 NAYKLLDEMREKDISPDVITYTSLIGGLGLIGQPDKAKHLLKEMHELGCYPDVPAYNTAI 328

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +      R+ DA  L+ EM   G+ P+A TYN FF+ Y    D   A +LY +M+ +G C
Sbjct: 329 RNFVIAKRLGDAFALMEEMASKGLMPNATTYNLFFRCYYWAYDIGSAWQLYERMRSEG-C 387

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  S   ++ +     R+    E+W+D+  +G G       +L   LC++ K  EA +
Sbjct: 388 FPNTQSCMFIVRLCHRHGRVAQALELWSDMVNNGFGSFTLVSDVLFDLLCDEGKLDEAER 447

Query: 242 YFVEMIEKGLLPQKVTF 258
            F +MIE G  P  V F
Sbjct: 448 CFHQMIELGQKPSNVAF 464



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 1/133 (0%)

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           EDAE  + EM   GV P   TYN     +   +    A KL  +M+E  +  P++ +Y  
Sbjct: 233 EDAEAFVAEMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEMREKDIS-PDVITYTS 291

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           LIG    + + D  + +  ++   G  PD+ +Y   I      ++  +A     EM  KG
Sbjct: 292 LIGGLGLIGQPDKAKHLLKEMHELGCYPDVPAYNTAIRNFVIAKRLGDAFALMEEMASKG 351

Query: 251 LLPQKVTFETLYR 263
           L+P   T+   +R
Sbjct: 352 LMPNATTYNLFFR 364



 Score = 43.9 bits (102), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 14/199 (7%)

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL------CSC 127
           G+ P   +    L+V  RA +     D L     + + P   T  + +  L      CS 
Sbjct: 105 GVAPSPFALDTALYVLGRARRFAHMWDLLR--SSRRLVPDAVTPRTAMVVLGRVAKVCSV 162

Query: 128 GRIEDAEELLGEMVRN-GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH 186
               D+   L  M+R  G     + +N   +     K  + A  +Y  +K +     N  
Sbjct: 163 RETVDSFRRLSRMLRGRGDDQEGQLFNALLRTLCQEKSMSDARNVYHALKYEFKV--NRQ 220

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
           ++NIL+  + +    +       +++  G+ PDL +Y  LI   C+ +  + A +   EM
Sbjct: 221 TFNILLSGWKSAEDAEA---FVAEMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEM 277

Query: 247 IEKGLLPQKVTFETLYRGL 265
            EK + P  +T+ +L  GL
Sbjct: 278 REKDISPDVITYTSLIGGL 296


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 138/282 (48%), Gaps = 11/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G CKI     A     +M E G +P+VVTY+ +++ +C+          ++ + 
Sbjct: 13  YTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCK----------DRRVN 62

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F  M+ +GI P++ +++ ++       + + +   LN M    I P + T+S ++
Sbjct: 63  EALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLI 122

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + +A  +L  M   GV P+  TY+     Y  + +   A KL+  M   G C
Sbjct: 123 NIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKG-C 181

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SYNILI  +    R+   ++++N++   GL PD+ SY  LI GLC+  + +EA  
Sbjct: 182 KPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHD 241

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            F  M+  G LP   T+  L  G  +   L    RL + +  
Sbjct: 242 LFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQS 283



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 137/257 (53%), Gaps = 11/257 (4%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M+ RG +P+V TY  ++NG+C+           +T+  A  +F +M   G +PDV ++S 
Sbjct: 1   MVARGYQPDVHTYTTIINGLCK---------IGETVA-AAGLFKKMGEAGCQPDVVTYST 50

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           ++    +  +   +LD  ++MK KGI P + TY+S+++ LC+  R  +A  +L EM+   
Sbjct: 51  IIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLN 110

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           + P+  T++     +    +   A  + + M E G+  PN+ +Y+ L+  +     +   
Sbjct: 111 IMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGV-EPNVVTYSSLMNGYSLQAEVFEA 169

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           R++++ +   G  PD+ SY +LI+G C+ ++  EA Q F EMI +GL P  V++ TL  G
Sbjct: 170 RKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDG 229

Query: 265 LIQSDMLRTWRRLKKKL 281
           L Q   LR    L K +
Sbjct: 230 LCQLGRLREAHDLFKNM 246



 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 134/280 (47%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I   CK  R++ A      M  +G+ PN+ TYN L+ G+C  +            R
Sbjct: 48  YSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRW----------R 97

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + +EM    I P++ +FS++++++ +      +   L  M E G+ P V TYSS++
Sbjct: 98  EASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLM 157

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                   + +A +L   M+  G  P   +YN     Y   K    A +L+ +M   GL 
Sbjct: 158 NGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGL- 216

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SYN LI     L R+    +++ ++  +G  PDL +Y++L+ G C++    +A +
Sbjct: 217 TPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFR 276

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            F  M    L P  V +  L   + +S  L+  R+L  +L
Sbjct: 277 LFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSEL 316



 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 118/225 (52%), Gaps = 11/225 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ LI  +CK   +  A   L  M E GVEPNVVTY+ L+NG   +A     E FE    
Sbjct: 118 FSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQA-----EVFE---- 168

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+FD M  +G +PDV S++I+++ Y +A +   +    N M  +G+ P + +Y++++
Sbjct: 169 -ARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLI 227

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+ +A +L   M+ NG  P   TY+     +  +     A +L+R M+   L 
Sbjct: 228 DGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYL- 286

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            PNM  YNILI        +   R++++++   GL P++  + + 
Sbjct: 287 KPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNMKHWKLF 331



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 123/253 (48%), Gaps = 11/253 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G C  +R   A   L EM+   + PN+VT+++L+N  C+          E  + 
Sbjct: 83  YNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCK----------EGNVF 132

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V   M   G+EP+V ++S +++ YS   +   +    + M  KG  P V +Y+ ++
Sbjct: 133 EARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILI 192

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI +A++L  EM+  G+ P   +YN              A  L++ M  +G  
Sbjct: 193 NGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNG-N 251

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y+IL+  F     +     ++  ++ + L P++  Y +LI  +C+ +  KEA +
Sbjct: 252 LPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARK 311

Query: 242 YFVEMIEKGLLPQ 254
            F E+  +GL P 
Sbjct: 312 LFSELFVQGLQPN 324


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 139/275 (50%), Gaps = 8/275 (2%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           +++LIYG+C + +   A     EM+   + P+V T+N+L++ +C+  S   ++       
Sbjct: 226 FSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMM 285

Query: 60  -----IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV 114
                +  A+ VF+ +  R + PDV S++I++    +      +L   N M+ KGI P  
Sbjct: 286 KEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDK 345

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            TYSS++  LC   RI  A ELL +M   G      TY  F          + A+ L ++
Sbjct: 346 VTYSSLIDGLCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKK 405

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           +K+ G+  PN+++YNILI       R +  + I+ D+   G    + +Y ++I+GLC + 
Sbjct: 406 IKDQGI-QPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEG 464

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            + EA     +M + G  P  VT+ET+ R L ++D
Sbjct: 465 LFDEAMTLLEKMEDNGCTPDVVTYETIIRALFKND 499



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 135/296 (45%), Gaps = 29/296 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + ++I  +C +  +D A   L ++++ G  P+ +T   L+ G+C    +H +  F     
Sbjct: 86  FNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFH---- 141

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 D +  RG   +  S+ I+++   +  + + +L  L  +  K +   V  YS+++
Sbjct: 142 ------DHVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYSTII 195

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    + +A EL  +M+   V P   T++     +        A  L+ +M    + 
Sbjct: 196 DSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNIN 255

Query: 182 VPNMHSYNILIG-----------------MFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
            P++ ++NIL+                  M   +N+++  + ++N +    + PD+ SYT
Sbjct: 256 -PDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYT 314

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKK 279
           ++I  LC+ +   EA   F EM  KG+ P KVT+ +L  GL +S+ +   W  L +
Sbjct: 315 IIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQ 370



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 139/311 (44%), Gaps = 48/311 (15%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR----RASLHPSERF-- 56
           T+LI G C   ++  A  F   +I RG   N V+Y +L+NG+C+    RA+L    +   
Sbjct: 122 TTLIKGLCLNGKVHEALHFHDHVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDG 181

Query: 57  -------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
                              EK +  A +++ +M V+ + PDV +FS +++ +    Q + 
Sbjct: 182 KLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKE 241

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR--NGVCPSAETYNCF 155
           +    + M    I P V T++ +V  LC  G  ++ + +L  M++  N V  +   +N  
Sbjct: 242 AFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNII 301

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                G++                   P++HSY I+I     +  +D    ++N+++  G
Sbjct: 302 -----GKRRVT----------------PDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKG 340

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           + PD  +Y+ LI GLC+ ++   A +   +M  +G     +T+ +    L ++  +    
Sbjct: 341 ITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAV 400

Query: 276 RLKKKLDEESI 286
            L KK+ ++ I
Sbjct: 401 ALVKKIKDQGI 411



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 45/214 (21%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I   CKI  +D A     EM  +G+ P+ VTY+ L++G+C+      SER    I 
Sbjct: 313 YTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCK------SER----IS 362

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++ D+M  RG   DV +++  LH   + HQ   ++  +  +K++GI P + TY+ ++
Sbjct: 363 HAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILI 422

Query: 122 KCLCSCGRIEDAE-----------------------------------ELLGEMVRNGVC 146
             LC  GR E+A+                                    LL +M  NG  
Sbjct: 423 DGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCT 482

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           P   TY    +      + + A KL R+M   GL
Sbjct: 483 PDVVTYETIIRALFKNDENHKAEKLLREMIARGL 516



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 117/270 (43%), Gaps = 15/270 (5%)

Query: 1   MYTSLIYGWCKIN--RIDMAERFLG--EMIERGVEPNVVTYNVLLNGVCRRASLHPSERF 56
           ++ +L Y   K N   +D+ +       M+     P+++ +N +L       SL  S   
Sbjct: 9   LFRTLHYSHSKFNSNHVDVHDAISSFYRMLRMNPSPSIIEFNKIL------GSLVKSNNN 62

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
              I  A  ++  +++  I P + +F+ V++ Y    +   +   L  + + G  P   T
Sbjct: 63  NYPI--AISLYHRLQLNAITPSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTIT 120

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
            ++++K LC  G++ +A      ++  G   +  +Y           +   A+++ R++ 
Sbjct: 121 LTTLIKGLCLNGKVHEALHFHDHVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKI- 179

Query: 177 EDG-LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            DG L   N+  Y+ +I        +    E+++ +    + PD+ +++ LI+G C   +
Sbjct: 180 -DGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQ 238

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +KEA   F EM+   + P   TF  L   L
Sbjct: 239 FKEAFGLFHEMVLTNINPDVCTFNILVDAL 268



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 3/155 (1%)

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG--AMKLYRQMKEDGLCVPNMHS 187
           + DA      M+R    PS   +N          + N   A+ LY +++ + +  P++ +
Sbjct: 27  VHDAISSFYRMLRMNPSPSIIEFNKILGSLVKSNNNNYPIAISLYHRLQLNAI-TPSIVT 85

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           +N +I  +  L  MD    +   +   G  PD  + T LI GLC   K  EA  +   +I
Sbjct: 86  FNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFHDHVI 145

Query: 248 EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
            +G    +V++  L  GL +    R   ++ +K+D
Sbjct: 146 ARGFRLNEVSYGILINGLCKMGETRAALQVLRKID 180


>gi|326524037|dbj|BAJ97029.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 599

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 133/272 (48%), Gaps = 13/272 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+YGWC++ ++D A+  L  M   GV P+VV +N LL G           RFE    
Sbjct: 195 YTALLYGWCRLAKLDEAKHVLARMKAAGVAPDVVVFNTLLAGFVADG------RFE---- 244

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  EM  R   P+  S++ ++       +    +     M+ KG  P   TY ++V
Sbjct: 245 DAFELAREMERRDCPPNAVSYTTLMQGLGSKGRVDEVMRVFVEMRRKGCTPDSVTYGTLV 304

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR+    E L  M R+G+      Y  FF  +   +     ++L  +M+E   C
Sbjct: 305 TAFCKAGRLSQGYEFLDSMSRDGLRVDPGVYLGFFVAHEKEQQLEECLELMERMRE-CRC 363

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+++ YN++I +   L        +WN+ + SGL P +D++ ++++GL  +    +AC 
Sbjct: 364 PPDLNIYNVVIRLSCKLGETKQAIALWNETENSGLSPGVDTFAIMVNGLVGQGSLVDACN 423

Query: 242 YFVEMIEKGLL--PQKVTFETLYRGLIQSDML 271
           YF +M+ +GL   PQ    + L   L++ + L
Sbjct: 424 YFKDMVGRGLFVAPQYGVLKDLLNALVRDEKL 455


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 140/285 (49%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G CKI     A + L  + +R   PNVV YN +++G+C+          +K + 
Sbjct: 118 YATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCK----------DKLVN 167

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++ EM  RGI P+V ++S +++ +  A Q   +   LN M  K I P V TY+ ++
Sbjct: 168 EAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILM 227

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++++A+ LL  M + GV P+  +YN     Y    +   A +++  M + G+ 
Sbjct: 228 DALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVN 287

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN++SYNI+I       R+D    +  +V    + P+  +Y+ LI G C+  +   A  
Sbjct: 288 -PNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALD 346

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM  +G     VT+ +L   L ++  L     L  K+ E  I
Sbjct: 347 LLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGI 391



 Score =  133 bits (335), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 144/281 (51%), Gaps = 11/281 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++I G CK   ++ A     EM  RG+ PNV+TY+ L+ G C    L          
Sbjct: 152 MYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQL---------- 201

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + +EM ++ I P+V +++I++    +  + + + + L  M ++G+ P V +Y+++
Sbjct: 202 MEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTL 261

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G +++A+++   MV+ GV P+  +YN         K  + AM L R++    +
Sbjct: 262 MDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNM 321

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VPN  +Y+ LI  F  L R+    ++  ++   G   D+ +YT L+  LC+ Q   +A 
Sbjct: 322 -VPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKAT 380

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
             F++M E+G+ P K T+  L  GL +    +  ++L + L
Sbjct: 381 ALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHL 421



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 134/268 (50%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+   CK  ++  A+  L  M + GV+PNVV+YN L++G C              ++
Sbjct: 223 YTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGE----------VQ 272

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA+++F  M  +G+ P+V S++I++    ++ +   +++ L  +  K + P   TYSS++
Sbjct: 273 NAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLI 332

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GRI  A +LL EM   G      TY          ++ + A  L+ +MKE G+ 
Sbjct: 333 DGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGI- 391

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN ++Y  LI       R    ++++  +   G   ++ +Y ++I GLC++    EA  
Sbjct: 392 QPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALA 451

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              +M E G +P  VTFE + R L + D
Sbjct: 452 MKSKMEENGCIPDAVTFEIIIRSLFEKD 479



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 131/294 (44%), Gaps = 44/294 (14%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C + ++  +   LG++++ G +PN +T N L+ G+C +  +  S  F        
Sbjct: 51  LINCFCHLGQMTFSFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFH------- 103

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
              D++  +G + D  S++ +L+   +  + + +L  L  ++++   P V  Y++++  L
Sbjct: 104 ---DKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGL 160

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM--------- 175
           C    + +A +L  EM   G+ P+  TY+     +        A  L  +M         
Sbjct: 161 CKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNV 220

Query: 176 -----KEDGLC--------------------VPNMHSYNILIGMFMALNRMDMVREIWND 210
                  D LC                     PN+ SYN L+  +  +  +   +++++ 
Sbjct: 221 YTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHT 280

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           +   G+ P++ SY ++I  LC+ ++  EA     E++ K ++P  VT+ +L  G
Sbjct: 281 MVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDG 334



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 105/224 (46%), Gaps = 1/224 (0%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  +F +M+V+GIEPD+ + +I+++ +    Q   S   L  + + G  P   T ++++K
Sbjct: 29  AISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGYQPNTITLNTLMK 88

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  G ++ +     ++V  G      +Y           +   A+KL R M ED    
Sbjct: 89  GLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLR-MIEDRSTR 147

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN+  YN +I        ++   ++++++   G+ P++ +Y+ LI+G C   +  EA   
Sbjct: 148 PNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGL 207

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             EMI K + P   T+  L   L +   ++  + L   + +E +
Sbjct: 208 LNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGV 251



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 21/182 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSL+   CK   +D A     +M ERG++PN  TY  L++G+C+    H         +
Sbjct: 363 YTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGR-H---------K 412

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA+K+F  + V+G   +V ++++++    +      +L   + M+E G  P   T+  ++
Sbjct: 413 NAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIII 472

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN---GAMKLYRQMKED 178
           + L    + + AE+LL EM+   +          F+++ G +  N    A KL  +M   
Sbjct: 473 RSLFEKDQNDKAEKLLHEMIAKDLLR--------FRDFHGERSPNENDKAEKLLHEMIAK 524

Query: 179 GL 180
           GL
Sbjct: 525 GL 526


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 138/281 (49%), Gaps = 46/281 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI+  CK  R+  AE +L  M++    P+VVTYN +++G+C+           + I 
Sbjct: 478 YSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCK----------SRRIN 527

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +FD MR  G+ PDV ++SIV+H + + +    +   L  MKE    P V TYS+++
Sbjct: 528 DAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALI 587

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G ++ A ++  EM+  G  P+  TYN                        DGLC
Sbjct: 588 NGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLI---------------------DGLC 626

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
                           +N+++   E+   ++     PD  +YT LI+GLC   + +EA +
Sbjct: 627 ---------------KINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWR 671

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
              EM +KG LP ++T+ TL R L +++ L    +L K+++
Sbjct: 672 VLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEME 712



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 145/294 (49%), Gaps = 16/294 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I G+CK  ++  A   L +MI RG  P+V   + L++ +C+ A++  ++   +   
Sbjct: 408 YSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSI 467

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             +            PDV ++SI++H   +A +   +   L+ M +    P V TY+SVV
Sbjct: 468 GMD----------CAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVV 517

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   RI DA  L   M   GV P   TY+     +    + + A K+  +MKE   C
Sbjct: 518 DGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKE-AKC 576

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++ +Y+ LI        +D   +++ ++ G G  P+L +Y  LI GLC+  K ++A +
Sbjct: 577 VPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAE 636

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKKKLDE----ESITFGS 290
               M ++   P  +T+  L  GL  +  L   WR L++  D+    + +T+G+
Sbjct: 637 MLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGT 690



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 133/268 (49%), Gaps = 12/268 (4%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            +T LI+G C+   I  A   L EM   GV  NV+ +NV++ G+C            + + 
Sbjct: 880  FTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCS----------ARKLD 929

Query: 62   NAEKVFDEMRVRG-IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A ++F EM   G   PDV ++S ++    ++ +   +   +  M  KG  P V TYSS+
Sbjct: 930  SALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSL 989

Query: 121  VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
            +  LC  G++++A  LL  M R+G  P+  TYN     +      + A  L  +M  DG 
Sbjct: 990  LHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMV-DGG 1048

Query: 181  CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            C PN+ +Y +L+  F    + +    +   +   G  P+L +Y  L+   C+K + + AC
Sbjct: 1049 CQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERAC 1108

Query: 241  QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            Q    MI+KG +P  V++ T+  GL ++
Sbjct: 1109 QLLSSMIQKGCVPNVVSYNTVIAGLCKA 1136



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 139/300 (46%), Gaps = 17/300 (5%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y SL+  +CK + ++ A + L  MI++G  PNVV+YN ++ G+C+   +H          
Sbjct: 1091 YNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVH---------- 1140

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                + ++M      PD+ +F+ ++    + ++  ++ +  N ++E G  P + TY+S+V
Sbjct: 1141 EGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLV 1200

Query: 122  KCLCSCGRIEDAEELLGEMVR-NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              LC   R + AE LL EM R  G  P   TYN         K  + A KL+ QM  DGL
Sbjct: 1201 HGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL 1260

Query: 181  CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              P+  +Y+I+I        MD    +   +  +G  P   +Y  LI G C+     +A 
Sbjct: 1261 -APDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKAL 1319

Query: 241  QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGSEFQNY 295
            +    ++ KG  P  VTF      L +   LR         L+  L  +++T+ +  + +
Sbjct: 1320 EILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGF 1379



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 158/354 (44%), Gaps = 70/354 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI- 60
           YT++I G CK++++D A R + +MI+RG +PNV+TY  L++G CR   L  +    + + 
Sbjct: 303 YTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMT 362

Query: 61  --------------------RN----AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               RN    A +V   M   G  PD  ++S ++  + +A + +
Sbjct: 363 ERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLR 422

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL-------------------- 136
            + D L  M  +G  P VA  S+++  LC    I+ A+EL                    
Sbjct: 423 EAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILI 482

Query: 137 ---------------LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                          L  MV+N   P   TYN         +  N A  L+ +M+  G+ 
Sbjct: 483 HALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGV- 541

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y+I+I  F   N +D   ++   +K +   PD+ +Y+ LI+GLC+     +A  
Sbjct: 542 MPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFD 601

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ-------SDMLRTWRRLKKKLDEESITF 288
            F EM+  G  P  VT+ TL  GL +       ++ML   R  K+    +SIT+
Sbjct: 602 VFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMR--KQSCTPDSITY 653



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 140/277 (50%), Gaps = 12/277 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ S++ G C   +   A     EM  +   P+ VTYN ++NG      L  S+R +  I
Sbjct: 198 VHKSILRGLCDAGQCSDAVLHFREM-SKTCPPDSVTYNTMING------LSKSDRLDDAI 250

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R    + +EM   G  P+V S++ VLH + +A++ + +L  L  M  +G  P V +Y++V
Sbjct: 251 R----LLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTV 306

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   ++++A  ++ +M++ G  P+  TY      +    D +GA++L R+M E G 
Sbjct: 307 INGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGY 366

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  +YN ++ +F   N M+   ++   +  +G  PD  +Y+ +I G C+  K +EA 
Sbjct: 367 -RPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAH 425

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
               +MI +G  P      TL   L ++  + + + L
Sbjct: 426 DLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQEL 462



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 138/302 (45%), Gaps = 46/302 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G  K +R+D A R L EM++ G  PNV +YN +L+G C+             + 
Sbjct: 233 YNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCK----------ANRVE 282

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA  + ++M  RG  PDV S++ V++   +  Q   +   ++ M ++G  P V TY ++V
Sbjct: 283 NALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLV 342

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G ++ A EL+ +M   G  P+A TYN     +  R D   A ++ + M + G C
Sbjct: 343 DGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTG-C 401

Query: 182 VPNMHSYNILIGMFMALNRM-----------------------------------DMVRE 206
            P+  +Y+ +I  F    ++                                   D  +E
Sbjct: 402 PPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQE 461

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +     G    PD+ +Y++LIH LC+ ++  EA  +   M++    P  VT+ ++  GL 
Sbjct: 462 LLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLC 521

Query: 267 QS 268
           +S
Sbjct: 522 KS 523



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 133/295 (45%), Gaps = 25/295 (8%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-------- 53
            Y ++I G CK+ RID A   L EM++ G +PNVVTY VLL+  C+      +        
Sbjct: 1021 YNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMV 1080

Query: 54   ---------------ERFEKT--IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                           + F K   +  A ++   M  +G  P+V S++ V+    +A +  
Sbjct: 1081 EKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVH 1140

Query: 97   LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
              +  L  M      P + T+++++  +C   R++ A EL   +  +G  P+  TYN   
Sbjct: 1141 EGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLV 1200

Query: 157  KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                  +  + A  L R+M     C P++ +YN +I       R+D   +++  +   GL
Sbjct: 1201 HGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL 1260

Query: 217  GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
             PD  +Y+++I  LC+ +   EA      M++ G  P  +T+ TL  G  ++  L
Sbjct: 1261 APDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNL 1315



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 138/289 (47%), Gaps = 15/289 (5%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            + ++I   CK  R+D+A      + E G  PN+VTYN L++G+C+      S RF++   
Sbjct: 1161 FNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCK------SRRFDQ--- 1211

Query: 62   NAEKVFDEM-RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE +  EM R +G  PD+ +++ V+    ++ +   +      M   G+ P   TYS V
Sbjct: 1212 -AEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIV 1270

Query: 121  VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
            +  LC    +++A  +L  M++NG  P A TY      +    + + A+++ + +   G 
Sbjct: 1271 ISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKG- 1329

Query: 181  CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              P++ +++I I       R+    E+   +  +GL PD  +Y  L+ G C+    ++A 
Sbjct: 1330 SYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAV 1389

Query: 241  QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
              F  M + G  P   T+ TL   L+     ++++ L  ++ +  +  G
Sbjct: 1390 DLFEVMRQCGCEPDNATYTTLVGHLVDK---KSYKDLLAEVSKSMVDTG 1435



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 95/192 (49%), Gaps = 4/192 (2%)

Query: 74   GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSVVKCLCSCGRIED 132
            G   D  + + +L    R  +P+   D L   + K  C P + T++ ++  LC  G I  
Sbjct: 839  GYNHDTYTCNCLLQALLRLKRPK---DALQVYRNKLCCSPNMFTFTILIHGLCRAGDIGT 895

Query: 133  AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
            A ELL EM R+GV  +   +N   K     +  + A++L+++M+E G C P++ +Y+ ++
Sbjct: 896  AYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIV 955

Query: 193  GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
               +   ++D    +  D+   G  P++ +Y+ L+HGLC+  K  EA      M   G  
Sbjct: 956  DSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCS 1015

Query: 253  PQKVTFETLYRG 264
            P  VT+ T+  G
Sbjct: 1016 PNIVTYNTIIDG 1027



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 125/280 (44%), Gaps = 12/280 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI G+ +  +I  A     EM  +G++ +   +  +L G+C                
Sbjct: 164 YSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQ----------CS 213

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A   F EM  +   PD  +++ +++  S++ +   ++  L  M + G  P V +Y++V+
Sbjct: 214 DAVLHFREMS-KTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVL 272

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R+E+A  LL +MV  G  P   +Y             + A ++  +M + G C
Sbjct: 273 HGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRG-C 331

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  L+  F  +  +D   E+   +   G  P+  +Y  ++H  C +   + A Q
Sbjct: 332 QPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQ 391

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
               MI+ G  P  + + T+  G  ++  LR    L +++
Sbjct: 392 VLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQM 431



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 2/206 (0%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           D  ++S ++  + RA +   + +  + M  KG+      + S+++ LC  G+  DA    
Sbjct: 160 DTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHF 219

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            EM +    P + TYN            + A++L  +M ++G   PN+ SYN ++  F  
Sbjct: 220 REMSKT-CPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGF-APNVFSYNTVLHGFCK 277

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
            NR++    +   +   G  PD+ SYT +I+GLC+  +  EAC+   +MI++G  P  +T
Sbjct: 278 ANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVIT 337

Query: 258 FETLYRGLIQSDMLRTWRRLKKKLDE 283
           + TL  G  +   L     L +K+ E
Sbjct: 338 YGTLVDGFCRVGDLDGAVELVRKMTE 363



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 11/146 (7%)

Query: 56   FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK-LNFMKEKGICPTV 114
            F K    A  ++  M + G+EPD  +F  +L +   A     ++D+ ++  ++ G+ P V
Sbjct: 1499 FHKQEEQAFGLWRVMGLEGVEPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGV 1558

Query: 115  ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
              +S V+  L   G + +AE+L+  M      PSA T+NC    Y+   D   A+++   
Sbjct: 1559 DHFSCVIDLLGRLGLVNEAEDLMLGMPCK---PSAATWNCLLSAYKICGDFERALRVAEL 1615

Query: 175  MKEDGLCVPNMHSYNILIGMFMALNR 200
                    P   SY +L  M+   ++
Sbjct: 1616 N-------PTQASYLLLSNMYAQYDK 1634


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 137/268 (51%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ L+ G+CK   I  A+  L  M+++ ++P+VVTY+ L++G C              + 
Sbjct: 406 FSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYC----------LVNEVN 455

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE +F+ M  RG+  +V S++I+++ + +      ++     M  K I P V TYSS++
Sbjct: 456 KAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLI 515

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GRI  A EL+ EM   G  P   TYN        +   + A+ L  ++K  G+ 
Sbjct: 516 DGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGI- 574

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+M++Y IL+       +++  R+++ D+   G   D+ +YT++I G C+K  + EA  
Sbjct: 575 RPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALA 634

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              +M E G +P   T+E +   L + D
Sbjct: 635 LLSKMEENGCIPDAKTYEIIILSLFEKD 662



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 138/281 (49%), Gaps = 11/281 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++I G CK   ++ A     E + + + P+V TYN L++G C    L          
Sbjct: 335 MYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKL---------- 384

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           ++A  +F++M  + I PDV +FSI++  + +    + + + L  M ++ I P V TYSS+
Sbjct: 385 KDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSL 444

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C    +  AE +   M   GV  + ++YN     +   K  + AMKL+++M    +
Sbjct: 445 MDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQI 504

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +Y+ LI       R+    E+ +++   G  PD+ +Y  ++  LC+K    +A 
Sbjct: 505 -FPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAI 563

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
               ++  +G+ P   T+  L +GL QS  L   R++ + L
Sbjct: 564 TLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDL 604



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 138/285 (48%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK+     A   L     + V+P+VV YN +++G+C+          +K + 
Sbjct: 301 YGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCK----------DKHVN 350

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  ++ E   + I PDV +++ ++  +    + + ++D  N M  K I P V T+S +V
Sbjct: 351 DAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILV 410

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G I++A+ +L  M++  + P   TY+     Y    + N A  ++  M   G+ 
Sbjct: 411 DGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGV- 469

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+ SYNI+I  F  +  +D   +++ ++    + PD+ +Y+ LI GLC+  +   A +
Sbjct: 470 TANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALE 529

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM  +G  P  +T+ ++   L +   +     L  KL  + I
Sbjct: 530 LVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGI 574



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 45/217 (20%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G+CKI  +D A +   EM  + + P+V+TY+ L++G+C+             I 
Sbjct: 476 YNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGR----------IS 525

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ DEM  RG +PD+ +++ +L    + H    ++  L  +K +GI P + TY+ +V
Sbjct: 526 YALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILV 585

Query: 122 KCLCSCGRIEDAEE-----------------------------------LLGEMVRNGVC 146
           K LC  G++EDA +                                   LL +M  NG  
Sbjct: 586 KGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCI 645

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           P A+TY         + + + A KL R+M   GL V 
Sbjct: 646 PDAKTYEIIILSLFEKDENDMAEKLLREMIMRGLLVA 682



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 117/279 (41%), Gaps = 44/279 (15%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           ++++ G EP+ +T    + G C +  +H +  F           D++   G   D  S+ 
Sbjct: 253 KILKNGYEPDTITLTTFIKGFCLKGQIHQALHFH----------DKVIAMGFHLDQVSYG 302

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            +++   +  + + +L+ L     K + P V  Y++++  +C    + DA +L  E V  
Sbjct: 303 TLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSK 362

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE--------------DGLC-------- 181
            + P   TYN     +        A+ L+ +M                DG C        
Sbjct: 363 RIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEA 422

Query: 182 ------------VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
                        P++ +Y+ L+  +  +N ++    I+N +   G+  ++ SY ++I+G
Sbjct: 423 KNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMING 482

Query: 230 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            C+ +   EA + F EM  K + P  +T+ +L  GL +S
Sbjct: 483 FCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKS 521


>gi|242047668|ref|XP_002461580.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
 gi|241924957|gb|EER98101.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
          Length = 532

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 138/275 (50%), Gaps = 14/275 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I+G+ K + +  A     EM++RG+ P+VVT N +++G+C+  ++           
Sbjct: 124 YTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMD---------- 173

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+V  +M  + I PD T+++ ++H Y  + Q + ++  L  M   G  P   TYS ++
Sbjct: 174 KAEEVLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLI 233

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLC  G   +A E+L  M+++   P+  TY      Y  + D      L   M ++G+ 
Sbjct: 234 DCLCKFGGHTEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGV- 292

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ H +NI I  ++   R+D     +N ++  GL PD+ SY  +I GLC+  +   A  
Sbjct: 293 RPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMS 352

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            F +MI+ GL P  V F  L  G     M   W +
Sbjct: 353 QFCQMIDDGLSPDIVVFTNLIHGF---SMYGKWEK 384



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 117/266 (43%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI   CK      A   L  MI+    PNV TY  LL+G   +  L           
Sbjct: 229 YSMLIDCLCKFGGHTEAREILNSMIQSRGNPNVATYGGLLHGYATKGDL----------V 278

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + D M   G+ PD   F+I ++ Y +  +   ++   N M+++G+ P + +Y +++
Sbjct: 279 EMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMI 338

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR++ A     +M+ +G+ P    +      +        A +L+ +M + G+ 
Sbjct: 339 DGLCKIGRLDAAMSQFCQMIDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGI- 397

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P +  +  +I       ++   + +++ +  + + P++ SY  +IHG     K  E  +
Sbjct: 398 RPTVVVFTTMIDKLFKEGKVTEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLK 457

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +M+  GL P  VTF TL   ++ 
Sbjct: 458 LLDDMLSVGLKPNAVTFNTLLDDMLS 483



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 114/252 (45%), Gaps = 27/252 (10%)

Query: 6   IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEK 65
           IY + K  R+D A     +M ++G+ P++++Y  +++G+C+   L            A  
Sbjct: 303 IYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDA----------AMS 352

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
            F +M   G+ PD+  F+ ++H +S   + + + +    M ++GI PTV  +++++  L 
Sbjct: 353 QFCQMIDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLF 412

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
             G++ +A+ L   M    V P+  +YN     Y      +  +KL   M   GL  PN 
Sbjct: 413 KEGKVTEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGL-KPNA 471

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
            ++N L+                +D+   GL PD+ +   LI   CE  + ++    F E
Sbjct: 472 VTFNTLL----------------DDMLSMGLKPDVATCNTLIDSCCEDGRIEDVLTLFRE 515

Query: 246 MIEKGLLPQKVT 257
           M+ K      VT
Sbjct: 516 MLSKAAKTDTVT 527



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 116/269 (43%), Gaps = 18/269 (6%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG--IEPDVTSFSIVL 86
           G  P+V +Y VLL G+C           EK    A  +   M   G    P+V S++ V+
Sbjct: 79  GCTPDVFSYTVLLKGLCD----------EKKCEEAVDLIHMMAEDGDHCPPNVVSYTTVI 128

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
           H + +  +   +      M ++GI P V T +S++  LC    ++ AEE+L +M    + 
Sbjct: 129 HGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQMFDKHIM 188

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P   TYN     Y        A+++ +QM   G   PN  +Y++LI            RE
Sbjct: 189 PDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQ-PPNGVTYSMLIDCLCKFGGHTEARE 247

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET-LYR-- 263
           I N +  S   P++ +Y  L+HG   K    E       M++ G+ P    F   +Y   
Sbjct: 248 ILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYV 307

Query: 264 --GLIQSDMLRTWRRLKKKLDEESITFGS 290
             G +   ML   +  ++ L  + I++G+
Sbjct: 308 KCGRLDEAMLTFNKMRQQGLMPDIISYGT 336



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 89/184 (48%), Gaps = 6/184 (3%)

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
            K + PT  TY+ ++ C C  G +  A   LG++++ G+  +A ++    +     K  +
Sbjct: 6   SKKVAPTTVTYTILISCCCYVGCLNLAFAALGQIIKTGLRANAISFTPILRTLCAEKRTS 65

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR----MDMVREIWNDVKGSGLGPDLDS 222
            AM +  +      C P++ SY +L+       +    +D++  +  D  G    P++ S
Sbjct: 66  DAMNIVIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAED--GDHCPPNVVS 123

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           YT +IHG  ++ +  +A   F EM+++G+ P  VT  ++  GL +   +     + +++ 
Sbjct: 124 YTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQMF 183

Query: 283 EESI 286
           ++ I
Sbjct: 184 DKHI 187



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++T+LI+G+    + + AE    EM++RG+ P VV +  +++ + +          E  +
Sbjct: 368 VFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFK----------EGKV 417

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ---------PQLSL----------DK 101
             A+ +FD M +  ++P+V S++ ++H Y  A +           LS+            
Sbjct: 418 TEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNTL 477

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           L+ M   G+ P VAT ++++   C  GRIED   L  EM+         T N
Sbjct: 478 LDDMLSMGLKPDVATCNTLIDSCCEDGRIEDVLTLFREMLSKAAKTDTVTEN 529


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 138/267 (51%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI+G    N+   A   +  M++RG +P++VTY  ++NG+C+R              
Sbjct: 186 FTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDL--------- 236

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + ++M    IE +V  +S V+    +      +L+    M+ KG+ P V TYSS++
Sbjct: 237 -ALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLI 295

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLC+ GR  DA  LL +M+   + P+  T++     +  +     A KLY +M +  + 
Sbjct: 296 SCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSI- 354

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y+ LI  F  L+R+   +++   +      P++ +Y  LI+G C+ ++  +  +
Sbjct: 355 DPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGME 414

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F EM ++GL+   VT+ TL  G  Q+
Sbjct: 415 LFREMSQRGLVGNTVTYTTLIHGFFQA 441



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 124/243 (51%), Gaps = 11/243 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI   C   R   A R L +MIER + PN+VT++ L++   ++  L           
Sbjct: 291 YSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKL----------V 340

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK+++EM  R I+P++ ++S +++ +    +   +   L  M  K   P V TY++++
Sbjct: 341 KAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLI 400

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R++   EL  EM + G+  +  TY      +   +D + A  +++QM   G+ 
Sbjct: 401 NGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVH 460

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YNIL+       ++     ++  ++ S + PD+ +Y ++I G+C+  KWK    
Sbjct: 461 -PNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKWKMGGI 519

Query: 242 YFV 244
           YFV
Sbjct: 520 YFV 522



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 128/265 (48%), Gaps = 11/265 (4%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           SL+ G+C  NRI  A   + +M+E G +P+ VT+  L++G+     LH           A
Sbjct: 153 SLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGL----FLHNKAS------EA 202

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             + D M  RG +PD+ ++  V++   +     L+L+ LN M+   I   V  YS+V+  
Sbjct: 203 VALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDS 262

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC     +DA  L  EM   GV P+  TY+            + A +L   M E  +  P
Sbjct: 263 LCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKIN-P 321

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N+ +++ LI  F+   ++    +++ ++    + P++ +Y+ LI+G C   +  EA Q  
Sbjct: 322 NLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQML 381

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQS 268
             MI K  LP  VT+ TL  G  ++
Sbjct: 382 ELMIRKDCLPNVVTYNTLINGFCKA 406



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 133/299 (44%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ L+    K+N+ D+   F  +M   G+  N+ TYN+L+N  CR + L  +        
Sbjct: 81  FSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALALL---- 136

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                  +M   G EPD+ + + +L+ +   ++   ++  ++ M E G  P   T+++++
Sbjct: 137 ------GKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLI 190

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L    +  +A  L+  MV+ G  P   TY         R D + A+ L  +M E    
Sbjct: 191 HGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKM-EAAKI 249

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+  Y+ +I         D    ++ +++  G+ P++ +Y+ LI  LC   +W +A +
Sbjct: 250 EANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASR 309

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
              +MIE+ + P  VTF  L    ++   L    +L     K+ +D    T+ S    +
Sbjct: 310 LLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGF 368



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/254 (20%), Positives = 101/254 (39%), Gaps = 41/254 (16%)

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC--------- 127
           P +  FS +L   ++ ++  L +     M+  GI   + TY+ ++ C C C         
Sbjct: 76  PSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALAL 135

Query: 128 --------------------------GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
                                      RI DA  L+ +MV  G  P   T+         
Sbjct: 136 LGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFL 195

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
              A+ A+ L  +M + G C P++ +Y  ++         D+   + N ++ + +  ++ 
Sbjct: 196 HNKASEAVALIDRMVQRG-CQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVV 254

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWR-R 276
            Y+ +I  LC+ +   +A   F EM  KG+ P  +T+ +L   L      SD  R     
Sbjct: 255 IYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDM 314

Query: 277 LKKKLDEESITFGS 290
           +++K++   +TF +
Sbjct: 315 IERKINPNLVTFSA 328



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 1/149 (0%)

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y  V++   S   ++DA  L G M ++   PS   ++            +  +    +M+
Sbjct: 46  YREVLRTGLSDIELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKME 105

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G+   N+++YNILI  F   +R+ +   +   +   G  PD+ +   L++G C   + 
Sbjct: 106 ILGIS-HNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRI 164

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            +A     +M+E G  P  VTF TL  GL
Sbjct: 165 SDAVALVDQMVEMGYKPDTVTFTTLIHGL 193


>gi|222624423|gb|EEE58555.1| hypothetical protein OsJ_09859 [Oryza sativa Japonica Group]
          Length = 858

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 129/257 (50%), Gaps = 14/257 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ GW      + AE F+ EM E GVEP++VTYN L++  C+           + + 
Sbjct: 222 FNILLSGW---KSAEDAEAFVAEMRELGVEPDLVTYNSLIDCHCK----------NRGVE 268

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA K+ DEMR + I PDV +++ ++       QP  +   L  M E G  P V  Y++ +
Sbjct: 269 NAYKLLDEMREKDISPDVITYTSLIGGLGLIGQPDKAKHLLKEMHELGCYPDVPAYNTAI 328

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +      R+ DA  L+ EM   G+ P+A TYN FF+ Y    D   A +LY +M+ +G C
Sbjct: 329 RNFVIAKRLGDAFALMEEMASKGLMPNATTYNLFFRCYYWAYDIGSAWQLYERMRSEG-C 387

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  S   ++ +     R+    E+W+D+  +G G       +L   LC++ K  EA +
Sbjct: 388 FPNTQSCMFIVRLCHRHGRVAQALELWSDMVNNGFGSFTLVSDVLFDLLCDEGKLDEAER 447

Query: 242 YFVEMIEKGLLPQKVTF 258
            F +MIE G  P  V F
Sbjct: 448 CFHQMIELGQKPSNVAF 464



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 1/133 (0%)

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           EDAE  + EM   GV P   TYN     +   +    A KL  +M+E  +  P++ +Y  
Sbjct: 233 EDAEAFVAEMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEMREKDIS-PDVITYTS 291

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           LIG    + + D  + +  ++   G  PD+ +Y   I      ++  +A     EM  KG
Sbjct: 292 LIGGLGLIGQPDKAKHLLKEMHELGCYPDVPAYNTAIRNFVIAKRLGDAFALMEEMASKG 351

Query: 251 LLPQKVTFETLYR 263
           L+P   T+   +R
Sbjct: 352 LMPNATTYNLFFR 364



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 16/200 (8%)

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL------CSC 127
           G+ P   +    L+V  RA +     D L     + + P   T  + +  L      CS 
Sbjct: 105 GVAPSPFALDTALYVLGRARRFAHMWDLLR--SSRRLVPDAVTPRTAMVVLGRVAKVCSV 162

Query: 128 GRIEDAEELLGEMVRN-GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH 186
               D+   L  M+R  G     + +N   +     K  + A  +Y  +K +     N  
Sbjct: 163 RETVDSFRRLSRMLRGRGDDQEGQLFNALLRTLCQEKSMSDARNVYHALKYEFKV--NRQ 220

Query: 187 SYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
           ++NIL+ G   A +    V E+    +  G+ PDL +Y  LI   C+ +  + A +   E
Sbjct: 221 TFNILLSGWKSAEDAEAFVAEM----RELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDE 276

Query: 246 MIEKGLLPQKVTFETLYRGL 265
           M EK + P  +T+ +L  GL
Sbjct: 277 MREKDISPDVITYTSLIGGL 296


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 142/279 (50%), Gaps = 16/279 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK   ID AE    +MI++GV+P+ +TY ++++G+C+           +++ 
Sbjct: 333 YNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCK----------AQSVD 382

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE VF +M  +G++P+  +++ ++H Y    Q +  + ++  M    + P V TY  ++
Sbjct: 383 RAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLL 442

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAM-KLYRQMKEDGL 180
             LC  G+  +A  L   M+R G+ PS   Y      Y G+K A   M  L   M  +G+
Sbjct: 443 DYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGY-GKKGALSEMHDLLNLMVANGI 501

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN   +N +I  +     +D V  I+  +K  GL P++ +Y  LI  LC+  +  +A 
Sbjct: 502 S-PNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAV 560

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
             F +MI +G+ P  V F +L  GL   D    W ++++
Sbjct: 561 LQFNQMINEGVTPNNVVFNSLVYGLCTVD---KWEKVEE 596



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 140/294 (47%), Gaps = 16/294 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK   +DMAE    +M+++GV+P+ VTYN +++G+C+           + + 
Sbjct: 263 YNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCK----------AQAVD 312

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE VF +M  RG++PD  +++ ++    +A     +      M +KG+ P   TY+ ++
Sbjct: 313 RAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIII 372

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    ++ AE +  +M+  GV P+  TYNC    Y         ++  ++M    L 
Sbjct: 373 DGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDL- 431

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y +L+       + +  R +++ +   G+ P +  Y +++HG  +K    E   
Sbjct: 432 EPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHD 491

Query: 242 YFVEMIEKGLLPQKVTFETLY-----RGLIQSDMLRTWRRLKKKLDEESITFGS 290
               M+  G+ P    F T+      R +I   M    +  ++ L    +T+G+
Sbjct: 492 LLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGT 545



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 137/287 (47%), Gaps = 20/287 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIE---RGVEPNVVTYNVLLNGVCRRASLHPSERFEK 58
           Y +L+ G C   R + A   L  M++       P+VV+YN+++NG             E 
Sbjct: 158 YNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFN----------EG 207

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            +  A  +F EM   G+ PDV +++ ++    +A +   + D    M EKG+ P   TY+
Sbjct: 208 QVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYN 264

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++  LC    ++ AE +  +MV  GV PS  TYN         +  + A  +++QM + 
Sbjct: 265 TIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDR 324

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P+  +YN +I        +D    ++  +   G+ PD  +YT++I GLC+ Q    
Sbjct: 325 GV-KPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDR 383

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           A   F +MI+KG+ P   T+  L  G + +     W  + +++ E S
Sbjct: 384 AEGVFQQMIDKGVKPNNGTYNCLIHGYLSTG---QWEEVVQRIKEMS 427



 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 147/370 (39%), Gaps = 94/370 (25%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNG---------VCRRASLHP 52
           YT +I G CK   +D AE    +MI++GV+PN  TYN L++G         V +R     
Sbjct: 368 YTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMS 427

Query: 53  SERFEKTI----------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +   E  +                  A  +FD M  +GI+P VT + I+LH Y +     
Sbjct: 428 AHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALS 487

Query: 97  LSLDKLNFM-----------------------------------KEKGICPTVATYSSVV 121
              D LN M                                   K++G+ P V TY +++
Sbjct: 488 EMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLI 547

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYN---------------------------- 153
             LC  GR++DA     +M+  GV P+   +N                            
Sbjct: 548 DALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIR 607

Query: 154 ---CFFKEYRGRKDANGAMKLYRQMKEDGLCV---PNMHSYNILIGMFMALNRMDMVREI 207
               FF          G +   R++ +  +C+   P++ SYN LI      +RMD   ++
Sbjct: 608 PDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKL 667

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            + +  +GL P++ SY  L+HG C+  +   A   F EM+ KG+ P   T+ T+  GL +
Sbjct: 668 LDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFR 727

Query: 268 SDMLRTWRRL 277
           S      R L
Sbjct: 728 SGRFSEAREL 737



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 136/275 (49%), Gaps = 19/275 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ SL+YG C +++ +  E    EM+ +G+ P++V +N +L  +C+          E  +
Sbjct: 577 VFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCK----------EGRV 626

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++ D M   G++PDV S++ ++  +  A +   ++  L+ M   G+ P + +Y+++
Sbjct: 627 MEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTL 686

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED-- 178
           +   C  GRI++A  L  EM+R GV P  ETYN            + A +LY  M +   
Sbjct: 687 LHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRK 746

Query: 179 --GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
              +C     +Y+I++  F   N  D   +I+  +    L  D+ ++ ++I GL +  + 
Sbjct: 747 LWSIC-----TYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRK 801

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           ++A   F  +   GL+P  VT+  +   LI+   L
Sbjct: 802 EDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSL 836



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 130/276 (47%), Gaps = 14/276 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G+    ++D A     EM   GV P+VVTYN +++G+C+           + + 
Sbjct: 196 YNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCK----------AQEVD 242

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE VF +M  +G++P+  +++ ++    +A +  ++      M +KG+ P+  TY++++
Sbjct: 243 RAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTII 302

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    ++ AE +  +M+  GV P   TYN         +  + A  +++QM + G+ 
Sbjct: 303 DGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGV- 361

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y I+I        +D    ++  +   G+ P+  +Y  LIHG     +W+E  Q
Sbjct: 362 KPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQ 421

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
              EM    L P   T+  L   L ++      R L
Sbjct: 422 RIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSL 457



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 132/273 (48%), Gaps = 19/273 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ ++I  + K   ID       +M ++G+ PNVVTY  L++ +C+             +
Sbjct: 507 IFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGR----------V 556

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ----PQLSLDKLNFMKEKGICPTVAT 116
            +A   F++M   G+ P+   F+ +++      +     +L L+ LN    +GI P +  
Sbjct: 557 DDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLN----QGIRPDIVF 612

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           +++V+  LC  GR+ +A  L+  MV  G+ P   +YN     +      + A+KL   M 
Sbjct: 613 FNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMV 672

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             GL  PN+ SYN L+  +    R+D    ++ ++   G+ P +++Y  +++GL    ++
Sbjct: 673 SAGL-KPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRF 731

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            EA + +V MI+   L    T+  +  G  +++
Sbjct: 732 SEARELYVNMIKSRKLWSICTYSIILDGFCKNN 764



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 126/273 (46%), Gaps = 16/273 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I  +C+I R+++     G +++ G   + +  N LL G+C    +   E     +R
Sbjct: 87  YSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRV--GEAMHVLLR 144

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFM---KEKGICPTVATYS 118
              +V       G    V S++ +L       + + + + L+ M   ++    P V +Y+
Sbjct: 145 QMPEV-------GCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYN 197

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            V+    + G+++ A  L  EM   GV P   TYN         ++ + A  +++QM E 
Sbjct: 198 IVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEK 254

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  PN  +YN +I        +DM   ++  +   G+ P   +Y  +I GLC+ Q    
Sbjct: 255 GV-KPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDR 313

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           A   F +MI++G+ P  VT+ T+  GL ++  +
Sbjct: 314 AEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAI 346



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 117/266 (43%), Gaps = 47/266 (17%)

Query: 47  RASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA---HQPQLSLDKLN 103
           RA++  +      + +A K+FDE+ +      V + + +L V SRA      +L++ + N
Sbjct: 11  RAAIGRARSGNLGLHDALKLFDELLLHARPASVRALNQLLSVVSRAKCSSSSKLAVSRFN 70

Query: 104 FMK---EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN--------------GVC 146
            M       + P   TYS V+ C C  GR+E      G +++               G+C
Sbjct: 71  RMLRDCSNKVAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLC 130

Query: 147 PSAE----------------------TYNCFFKEYRGRKDANGAMKLYRQM--KEDGLCV 182
            +                        +YN   K    R+ A  A +L   M   +D  C 
Sbjct: 131 DTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCS 190

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ SYNI+I  F    ++D    ++ ++   G+ PD+ +Y  +I GLC+ Q+   A   
Sbjct: 191 PDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDV 247

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQS 268
           F +M+EKG+ P  VT+ T+  GL ++
Sbjct: 248 FQQMVEKGVKPNNVTYNTIIDGLCKA 273



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 98/219 (44%), Gaps = 26/219 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTI 60
           Y +L++G+CK  RID A     EM+ +GV P V TYN +LNG+ R      + E +   I
Sbjct: 683 YNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMI 742

Query: 61  RN------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           ++                        A K+F  +    ++ D+ +F+I++    +  + +
Sbjct: 743 KSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKE 802

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++D    +   G+ P+V TY  + + L   G +E+ + L   M ++G  P++   N   
Sbjct: 803 DAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALI 862

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           ++   R +   A     ++ E    +    + ++LI +F
Sbjct: 863 RKLLDRGEIPRAGAYLSKLDEKNFSL-EASTTSMLISLF 900


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 138/302 (45%), Gaps = 11/302 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY   I    K+  + M   FL  M +RGV PNV  YNVL+ G+CR          EK I
Sbjct: 178 MYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCR----------EKRI 227

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R+AEK+FDEM    +   + +++ ++  Y +  +   +      MKEK + P + T++S+
Sbjct: 228 RDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSL 287

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   ++++A  LL EM  NG  P   TY+  F       D NGAM+LY Q  E G+
Sbjct: 288 LSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGI 347

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            + N ++ +IL+       +++   EI      +GL  D   Y   ++G C      +A 
Sbjct: 348 RINN-YTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAI 406

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
                M   GL P  +TF +L         +       KK+ E+ +T   E  N     Y
Sbjct: 407 LTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGY 466

Query: 301 RR 302
            +
Sbjct: 467 GK 468



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 132/272 (48%), Gaps = 12/272 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI G C + ++  A RF  EM+   + P +VTYNVL++G+C++  L  +E F   I
Sbjct: 528 VYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQI 587

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            ++          G  PDV +++ ++  Y+ A      L     MK  GI PTV TY  +
Sbjct: 588 TSS----------GHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPL 637

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   CS   IE  E+L  EM++  + P    YN     Y    +   A  L++ M + G+
Sbjct: 638 ISG-CSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGI 696

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  +YN LI       ++  ++++ N++K   L P  D+Y +L+ G C+ + +  A 
Sbjct: 697 -HPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAY 755

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
            ++ EM+E   LP       L  GL Q   L+
Sbjct: 756 VWYREMVENNFLPNASICNELTAGLEQEGRLQ 787



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 136/276 (49%), Gaps = 12/276 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+ K+   D   + L +M E GV+PNVV+Y  L+N +C+          +  I 
Sbjct: 459 YNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCK----------DGKIL 508

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE V  +M  RG+ P+   +++++       + + +L   + M    I PT+ TY+ ++
Sbjct: 509 EAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLI 568

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++ +AE+ L ++  +G  P   TYN     Y    + +  + LY  MK  G+ 
Sbjct: 569 DGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGI- 627

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +Y+ LI    +   +++V +++N++    L PD   Y  +IH   E    ++A  
Sbjct: 628 KPTVRTYHPLIS-GCSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYS 686

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
               M+++G+ P K+T+ +L  G  +   L   + L
Sbjct: 687 LHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDL 722



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 123/285 (43%), Gaps = 26/285 (9%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS----ERFE--- 57
           L+ G CK  +++ AE  L +  E G+  + V YN  +NG CR   ++ +    ER E   
Sbjct: 357 LLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFG 416

Query: 58  ------------------KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
                             K +  AE+   +M  +G+ P V +++ ++  Y +        
Sbjct: 417 LRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCF 476

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
             L  M+E G+ P V +Y S++ CLC  G+I +AE +L +M+  GV P+A+ YN      
Sbjct: 477 QILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGS 536

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
                   A++ + +M    +  P + +YN+LI       ++    +    +  SG  PD
Sbjct: 537 CMVGKVKDALRFFDEMMRSEIS-PTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPD 595

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           + +Y  LI G        +    +  M   G+ P   T+  L  G
Sbjct: 596 VITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISG 640



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 129/289 (44%), Gaps = 26/289 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR----RASLHPSERF- 56
           + SL+ G CK+ ++  A   L EM   G  P+  TY++L +G+ R      ++   E+  
Sbjct: 284 FNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQAT 343

Query: 57  EKTIR--------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           EK IR                     AE++  +    G+  D   ++  ++ Y R     
Sbjct: 344 EKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMN 403

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++  +  M+  G+ P   T++S++   C    ++ AEE + +M   GV PS ETYN   
Sbjct: 404 KAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLI 463

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y      +   ++  QM+E G+  PN+ SY  LI       ++     +  D+   G+
Sbjct: 464 DGYGKLCTFDRCFQILEQMEEIGV-KPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGV 522

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            P+   Y MLI G C   K K+A ++F EM+   + P  VT+  L  GL
Sbjct: 523 LPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGL 571



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 1/246 (0%)

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           EK       +F E+   G   D   ++  +    +    ++ ++ L+ M+++G+ P V  
Sbjct: 154 EKQFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFI 213

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+ ++  LC   RI DAE++  EM    +  S  TYN     Y    + + A K+  +MK
Sbjct: 214 YNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMK 273

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           E  +  PN+ ++N L+     + +M   R +  +++ +G  PD  +Y++L  GL      
Sbjct: 274 EKSV-APNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDG 332

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYH 296
             A + + +  EKG+     T   L  GL +   +     + KK  E  +       N  
Sbjct: 333 NGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTF 392

Query: 297 FKPYRR 302
              Y R
Sbjct: 393 VNGYCR 398



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 108/239 (45%), Gaps = 25/239 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G CK  ++  AE FL ++   G  P+V+TYN L++G     ++       +T++
Sbjct: 564 YNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMK 623

Query: 62  N------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
           N                         EK+++EM    + PD   ++ ++H Y+     Q 
Sbjct: 624 NLGIKPTVRTYHPLISGCSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQK 683

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           +      M ++GI P   TY+S++      G++ + ++L+  M    + P A+TY+   K
Sbjct: 684 AYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVK 743

Query: 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
            +   KD +GA   YR+M E+   +PN    N L        R+  V+ I +++   G+
Sbjct: 744 GHCDLKDFSGAYVWYREMVENNF-LPNASICNELTAGLEQEGRLQEVQVICSEMNVKGI 801



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/269 (19%), Positives = 105/269 (39%), Gaps = 39/269 (14%)

Query: 39  VLLNGVCRRASLHPSERF---EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           +LL   C  A+   ++     + T  +   +F       I   +T   ++L V  ++   
Sbjct: 63  ILLQQNCNEAAYSLAKSLILTKSTFSSPSDLFSCFSACSIPLRITLSDMLLSVCCKSKML 122

Query: 96  QLSLDKLNFMKEKGICPTVAT-----------------------------------YSSV 120
           + +++   FM+  G  P++ +                                   Y+  
Sbjct: 123 REAVELYEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFMEIENSGFRTDTFMYAKA 182

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++       ++   E L  M + GV P+   YN         K    A K++ +M    L
Sbjct: 183 IQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINL 242

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            V ++ +YN LI  +  +  +D   ++   +K   + P++ ++  L+ GLC+ +K KEA 
Sbjct: 243 -VGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEAR 301

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
               EM   G +P   T+  L+ GL++ D
Sbjct: 302 SLLKEMEVNGFMPDGYTYSILFDGLLRCD 330


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 141/282 (50%), Gaps = 18/282 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G C    +D A   +GEM E G+EPNVV Y+ LL G C+      S R+E    
Sbjct: 153 YGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCK------SGRWE---- 202

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  KVF EM  +GIEPDV  ++ ++    +  + + +   ++ M  +G+ P V TY+ ++
Sbjct: 203 DVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLI 262

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM-KEDGL 180
            C+C  G +++A  +L +M   GV P   TYN   K      + + AM L  +M +   +
Sbjct: 263 NCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNI 322

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+ ++N +I     + RM    ++   ++ +G   +L +Y +LI GL    K ++A 
Sbjct: 323 VKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAM 382

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQ-------SDMLRTWR 275
           +   EM   GL P   T+  L +G  +        D+L T R
Sbjct: 383 ELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMR 424



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 125/268 (46%), Gaps = 12/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + S+I G C I R+  A +    M E G   N+VTYN+L+ G+ R   +H        +R
Sbjct: 330 FNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLR---VH-------KVR 379

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ DEM   G+EPD  ++SI++  + +  Q   + D L+ M+++GI P +  Y  ++
Sbjct: 380 KAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLL 439

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G +E A  L  EM  N        Y+          D   A +L + + ++GL 
Sbjct: 440 VAMCEQGMMERARNLFNEM-DNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGL- 497

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y+I+I MF     M+    +   +  SG  PD+  +  LI G   K +  +  +
Sbjct: 498 TPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLE 557

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              EMI K +        TL   L+ S+
Sbjct: 558 LIREMITKNIALDSKIISTLSTSLVASN 585



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 129/276 (46%), Gaps = 31/276 (11%)

Query: 33  NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP------DVTSFSIVL 86
           + V+YN +L  +CRR              + ++    +R   +EP      +  S+++++
Sbjct: 76  DAVSYNTVLTALCRRG-------------HHDRAGALLRAMSLEPHPACRPNAVSYTVLM 122

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                      ++  L  M+  G+   V TY ++++ LC    ++ A EL+GEM  +G+ 
Sbjct: 123 RALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIE 182

Query: 147 PSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           P+   Y+   + Y   GR +  G  K++ +M E G+  P++  Y  LI     + +    
Sbjct: 183 PNVVVYSSLLQGYCKSGRWEDVG--KVFVEMSEKGI-EPDVVMYTGLIDSLCKVGKAKKA 239

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             + + +   GL P++ +Y +LI+ +C++   KEA     +M EKG+ P  VT+ TL +G
Sbjct: 240 HGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKG 299

Query: 265 L---IQSD----MLRTWRRLKKKLDEESITFGSEFQ 293
           L   ++ D    +L    R K  +    +TF S  Q
Sbjct: 300 LSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQ 335



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 134/338 (39%), Gaps = 88/338 (26%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT LI   CK+ +   A   +  M+ RG+EPNVVTYNVL+N +C+          E ++
Sbjct: 222 MYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCK----------EGSV 271

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE-----KGIC-PTV 114
           + A  V  +M  +G+ PDV +++ ++   S      L +D+  ++ E     K I  P V
Sbjct: 272 KEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDV----LEMDEAMWLLEEMVRGKNIVKPNV 327

Query: 115 ATYSSVVKCLCSCGR-----------------------------------IEDAEELLGE 139
            T++SV++ LC  GR                                   +  A EL+ E
Sbjct: 328 VTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDE 387

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA-- 197
           M   G+ P + TY+   K +      + A  L   M++ G+     H   +L+ M     
Sbjct: 388 MTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGM 447

Query: 198 -------LNRMD------------------------MVREIWNDVKGSGLGPDLDSYTML 226
                   N MD                          +E+   +   GL PD  +Y+++
Sbjct: 448 MERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIV 507

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           I+   +    + A     +M   G LP    F++L +G
Sbjct: 508 INMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQG 545



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 141/327 (43%), Gaps = 35/327 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMI---ERGVEPNVVTYNVLLNGVCRRASLHPSERFEK 58
           Y +++   C+    D A   L  M         PN V+Y VL+  +C       +    +
Sbjct: 80  YNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLR 139

Query: 59  TIRNAE-------------------------KVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93
           ++R+A                          ++  EM   GIEP+V  +S +L  Y ++ 
Sbjct: 140 SMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSG 199

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           + +        M EKGI P V  Y+ ++  LC  G+ + A  ++  MVR G+ P+  TYN
Sbjct: 200 RWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYN 259

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND-VK 212
                         A+ + ++M E G+  P++ +YN LI     +  MD    +  + V+
Sbjct: 260 VLINCMCKEGSVKEAIGVLKKMSEKGVA-PDVVTYNTLIKGLSDVLEMDEAMWLLEEMVR 318

Query: 213 GSGL-GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           G  +  P++ ++  +I GLC+  + ++A Q    M E G +   VT+  L  GL++   +
Sbjct: 319 GKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKV 378

Query: 272 RTWRRLKKKLDEESITFGSEFQNYHFK 298
           R       +L +E  + G E  ++ + 
Sbjct: 379 RK----AMELMDEMTSLGLEPDSFTYS 401


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 138/276 (50%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I G CK   +D AE    +MI++GV PN+VTY  L++G           ++++ +R
Sbjct: 242 YTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIG------QWKEVVR 295

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +  EM   G+EPD  ++ ++L    +  +   +    + M  KGI P V+ Y  ++
Sbjct: 296 ----MLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIIL 351

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               + G + +    L  MV NG+ P+   +N  F  +  +     AM ++ +M++ GL 
Sbjct: 352 HGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLS 411

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  LI     L R+D     +N +   G+ P++  +T L++GLC   KW++A +
Sbjct: 412 -PNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGE 470

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F EM+ +G+ P  V F T+   L     +   +RL
Sbjct: 471 LFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRL 506



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 140/295 (47%), Gaps = 11/295 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++TSL+YG C I++ + A     EM+ +G+ PNVV +N ++  +C           E  +
Sbjct: 451 VFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCT----------EGRV 500

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++ D M   G  PD+ S++ ++  +    +   +   L+ M   G+ P   TY+++
Sbjct: 501 MKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTL 560

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  GRI+DA  +  EM+ NG+ P   TYN         +  + A +LY  M   G 
Sbjct: 561 LHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGK 620

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              ++++YNI++      N +D   +++  +    L  D+ ++ ++I  L +  + ++A 
Sbjct: 621 -QWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAM 679

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
             F  +   GL+P   T+  +   LI+   L  +  +  ++++      S   N+
Sbjct: 680 NLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNF 734



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 138/299 (46%), Gaps = 19/299 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  +++G+     +     FL  M+  G+ PN   +N++     ++A           I
Sbjct: 346 IYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKA----------MI 395

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F++MR +G+ P+V +++ ++    +  +   +  K N M  +G+ P +  ++S+
Sbjct: 396 GEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSL 455

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  LC+  + E A EL  EMV  G+ P+   +N              A +L   M+  G 
Sbjct: 456 VYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVG- 514

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ SYN LI     + + D   ++ + +   GL P+  +Y  L+HG C   +  +A 
Sbjct: 515 TRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAY 574

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK--KKLDEESITFGSEFQNYHF 297
             F EM+  G+ P  VT+ T+  GL ++      RR    K+L    IT G ++  Y +
Sbjct: 575 SVFQEMLSNGITPVVVTYNTILHGLFKT------RRFSEAKELYLNMITSGKQWSIYTY 627



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 128/284 (45%), Gaps = 9/284 (3%)

Query: 5   LIYGWCKINRIDMA-ERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           L+ G C   R+  A    L  M E G  PNVV+YN LL G C         R E+ +   
Sbjct: 136 LLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFC------DENRAEEALELL 189

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             + D  +VR   P++ S++ V++ +    Q   + +    M ++GI P V TY+ V+  
Sbjct: 190 HMMADG-QVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDG 248

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC    ++ AE +  +M+  GV P+  TY C    Y         +++ ++M   GL  P
Sbjct: 249 LCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGL-EP 307

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           +  +Y +L+       +    R++++ +   G+ PD+  Y +++HG   K    E   + 
Sbjct: 308 DCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFL 367

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             M+  G+ P    F  ++    +  M+     +  K+ ++ ++
Sbjct: 368 DLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLS 411



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 141/293 (48%), Gaps = 16/293 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++  +   + K   I  A     +M ++G+ PNVV Y  L++ +C+             +
Sbjct: 381 IFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGR----------V 430

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +AE  F++M   G+ P++  F+ +++      + + + +    M  +GI P V  ++++
Sbjct: 431 DDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTI 490

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC+ GR+  A+ L+  M R G  P   +YN   + +      + A KL   M   GL
Sbjct: 491 MCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGL 550

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  +YN L+  +    R+D    ++ ++  +G+ P + +Y  ++HGL + +++ EA 
Sbjct: 551 -KPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAK 609

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSD----MLRTWRRL-KKKLDEESITF 288
           + ++ MI  G      T+  +  GL +++     L+ ++ L  K L  + ITF
Sbjct: 610 ELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITF 662



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 126/275 (45%), Gaps = 8/275 (2%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           +D A +   E +      +++ +N LL  V   +    S   E  +    ++  +   + 
Sbjct: 31  VDDALKLFDEFLHHARPASIIAFNQLLAAVSSASRRGSSSTSELVVSCFNRMIRDCCSK- 89

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG-ICPTVATYSSVVKCLCSCGRIEDA 133
           + PDV ++SI++  + R  + +        + + G     V   + ++K LC   R+ +A
Sbjct: 90  VAPDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLKGLCDAKRVGEA 149

Query: 134 EE-LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL--CVPNMHSYNI 190
              LL  M   G  P+  +YN   K +     A  A++L   M +  +  C PN+ SYN 
Sbjct: 150 MGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNT 209

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           +I  F    ++D    ++ D+   G+ P++ +YT++I GLC+ Q    A   F +MI+KG
Sbjct: 210 VINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKG 269

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           + P  VT+  L  G +    +  W+ + + L E S
Sbjct: 270 VRPNIVTYTCLIHGYLS---IGQWKEVVRMLKEMS 301



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 96/219 (43%), Gaps = 26/219 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y +L++G+C+  RID A     EM+  G+ P VVTYN +L+G+ +      ++       
Sbjct: 557 YNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMI 616

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  +  A K+F  +  + ++ D+ +F+I++    +  + +
Sbjct: 617 TSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKE 676

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +++    +   G+ P V TY  + + L   G +E+ + +  EM ++G  P++   N   
Sbjct: 677 DAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLV 736

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           +    R D + A     ++ E    +    + ++LI +F
Sbjct: 737 RRLLLRGDISRAGAYLSKIDEKNFSL-EASTTSMLISLF 774


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 143/285 (50%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G C  +R   A R L +MI++ + PNV+TY+ LL+   +             + 
Sbjct: 331 YTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK----------VL 380

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++F+EM    I+PD+ ++S +++      +   +    + M  KG    V +Y++++
Sbjct: 381 EAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLI 440

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R+ED  +L  EM + G+  +  TYN   + +    D + A + + QM   G+ 
Sbjct: 441 NGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGIS 500

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YNIL+G       ++    I+ D++   +  D+ +YT +I G+C+  K +EA  
Sbjct: 501 -PDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWS 559

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F  +  KGL P  VT+ T+  GL    +L     L  K+ +E +
Sbjct: 560 LFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL 604



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 138/267 (51%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I   CK  R++ A  F  E+  +G+ PNVVTY  L+NG+C       S R+     
Sbjct: 296 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCN------SSRWS---- 345

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  +M  + I P+V ++S +L  + +  +   + +    M    I P + TYSS++
Sbjct: 346 DAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLI 405

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   RI++A ++   MV  G      +YN     +   K     MKL+R+M + GL 
Sbjct: 406 NGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGL- 464

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V N  +YN LI  F     +D  +E ++ +   G+ PD+ +Y +L+ GLC+  + ++A  
Sbjct: 465 VSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALV 524

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F +M ++ +    VT+ T+ RG+ ++
Sbjct: 525 IFEDMQKREMDLDIVTYTTVIRGMCKT 551



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 137/267 (51%), Gaps = 11/267 (4%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            + +LI+G    N+   A   +  M+ +G +P++VTY V++NG+C+R              
Sbjct: 803  FNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL--------- 853

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             A  + ++M    +EP V  ++ ++    +      +L+    M+ KGI P V TYSS++
Sbjct: 854  -AFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI 912

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             CLC+ GR  DA  LL +M+   + P   T++     +        A KLY +M +  + 
Sbjct: 913  SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI- 971

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             P++ +Y+ LI  F   +R+D  ++++  +      PD+ +Y  LI G C+ ++ +E  +
Sbjct: 972  DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGME 1031

Query: 242  YFVEMIEKGLLPQKVTFETLYRGLIQS 268
             F EM ++GL+   VT+  L +GL Q+
Sbjct: 1032 VFREMSQRGLVGNTVTYNILIQGLFQA 1058



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 138/267 (51%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +I  +C   ++ +A   LG+M++ G EP+ VT   L+NG CRR            + 
Sbjct: 226 FNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRR----------NRVS 275

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  + D+M   G +PD+ +++ ++    +  +   + D    ++ KGI P V TY+++V
Sbjct: 276 DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALV 335

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+  R  DA  LL +M++  + P+  TY+     +        A +L+ +M    + 
Sbjct: 336 NGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSI- 394

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ LI      +R+D   ++++ +   G   D+ SY  LI+G C+ ++ ++  +
Sbjct: 395 DPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMK 454

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F EM ++GL+   VT+ TL +G  Q+
Sbjct: 455 LFREMSQRGLVSNTVTYNTLIQGFFQA 481



 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 133/264 (50%), Gaps = 11/264 (4%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y+SLI   C   R   A R L +MIER + P+V T++ L++   +          E  + 
Sbjct: 908  YSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK----------EGKLV 957

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             AEK++DEM  R I+P + ++S +++ +    +   +     FM  K   P V TY++++
Sbjct: 958  EAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLI 1017

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            K  C   R+E+  E+  EM + G+  +  TYN   +      D + A +++++M  DG+ 
Sbjct: 1018 KGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV- 1076

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             PN+ +YN L+       +++    ++  ++ S + P + +Y ++I G+C+  K ++   
Sbjct: 1077 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 1136

Query: 242  YFVEMIEKGLLPQKVTFETLYRGL 265
             F  +  KG+ P  V + T+  G 
Sbjct: 1137 LFCNLSLKGVKPDVVAYNTMISGF 1160



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 140/279 (50%), Gaps = 17/279 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI  +C+ +++ +A   LG+M++ G EPN+VT + LLNG C            K I 
Sbjct: 733 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCH----------SKRIS 782

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLH---VYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A  + D+M V G +P+  +F+ ++H   ++++A +    +D+   M  KG  P + TY 
Sbjct: 783 EAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDR---MVAKGCQPDLVTYG 839

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            VV  LC  G  + A  LL +M +  + P    YN         K  + A+ L+++M+  
Sbjct: 840 VVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK 899

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  PN+ +Y+ LI       R      + +D+    + PD+ +++ LI    ++ K  E
Sbjct: 900 GI-RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 958

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A + + EM+++ + P  VT+ +L  G    D L   +++
Sbjct: 959 AEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 997



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 132/282 (46%), Gaps = 16/282 (5%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           ++D A    GEM++    P+++ ++ LL+ + +        +F+  I   E    +M+  
Sbjct: 675 KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKM------NKFDVVISLGE----QMQNL 724

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           GI  +  ++SI+++ + R  Q  L+L  L  M + G  P + T SS++   C   RI +A
Sbjct: 725 GIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEA 784

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             L+ +M   G  P+  T+N           A+ AM L  +M   G C P++ +Y +++ 
Sbjct: 785 VALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG-CQPDLVTYGVVVN 843

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
                   D+   + N ++   L P +  Y  +I GLC+ +   +A   F EM  KG+ P
Sbjct: 844 GLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRP 903

Query: 254 QKVTFETLYRGLIQ----SDMLRTWRRL-KKKLDEESITFGS 290
             VT+ +L   L      SD  R    + ++K++ +  TF +
Sbjct: 904 NVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSA 945



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 111/229 (48%), Gaps = 11/229 (4%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y +LI G+CK  R++       EM +RG+  N VTYN+L+ G+ +               
Sbjct: 1013 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM--------- 1063

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             A+++F EM   G+ P++ +++ +L    +  + + ++    +++   + PT+ TY+ ++
Sbjct: 1064 -AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMI 1122

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            + +C  G++ED  +L   +   GV P    YN     +  +     A  L+++MKEDG  
Sbjct: 1123 EGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDG-T 1181

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
            +PN   YN LI   +     +   E+  +++  G   D  +  ++ + L
Sbjct: 1182 LPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 1230



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 142/322 (44%), Gaps = 51/322 (15%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           +++ A     +M++    P++V +N LL+ + +       ++++  I   +K    M V 
Sbjct: 168 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKL------KKYDVVISLGKK----MEVL 217

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           GI  D+ +F+IV++ +    Q  L+L  L  M + G  P   T  S+V   C   R+ DA
Sbjct: 218 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 277

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             L+ +MV  G  P    YN         K  N A   +++++  G+  PN+ +Y  L+ 
Sbjct: 278 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGI-RPNVVTYTALVN 336

Query: 194 MFMALNR--------MDMV---------------------------REIWNDVKGSGLGP 218
                +R         DM+                           +E++ ++    + P
Sbjct: 337 GLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDP 396

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTW 274
           D+ +Y+ LI+GLC   +  EA Q F  M+ KG L   V++ TL  G  ++    D ++ +
Sbjct: 397 DIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLF 456

Query: 275 RRLKKK-LDEESITFGSEFQNY 295
           R + ++ L   ++T+ +  Q +
Sbjct: 457 REMSQRGLVSNTVTYNTLIQGF 478



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 134/293 (45%), Gaps = 21/293 (7%)

Query: 18  AERFLG-EMIERGVEPNVVTYNVLLNGVCR---RASLHPS-----ERFEKT------IRN 62
           A+RFL   ++E G      + +      CR   RAS   S     ER  KT      + +
Sbjct: 112 AKRFLHRNLLENGKPRTASSPSFSHCSSCRCWVRASSSVSGGDLRERLSKTRLRDIKLND 171

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  +F +M      P +  F+ +L    +  +  + +     M+  GI   + T++ V+ 
Sbjct: 172 AIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVIN 231

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
           C C C ++  A  +LG+M++ G  P   T       +  R   + A+ L  +M E G   
Sbjct: 232 CFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGY-K 290

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ +YN +I       R++   + + +++  G+ P++ +YT L++GLC   +W +A + 
Sbjct: 291 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 350

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGS 290
             +MI+K + P  +T+  L    +++  +   + L     +  +D + +T+ S
Sbjct: 351 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSS 403



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 129/290 (44%), Gaps = 22/290 (7%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA-----------------SLHPSERFE 57
           I ++   + +M+  G  P+++    + +GVC++A                  L  +   E
Sbjct: 616 ITLSAELIKKMLSCGYAPSLL--KDIKSGVCKKALSLLRAFSGKTSYDYREKLSRNGLSE 673

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
             + +A  +F EM      P +  FS +L   ++ ++  + +     M+  GI     TY
Sbjct: 674 LKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTY 733

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           S ++ C C   ++  A  +LG+M++ G  P+  T +     Y   K  + A+ L  QM  
Sbjct: 734 SILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFV 793

Query: 178 DGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
            G   PN  ++N LI G+F+  N+      + + +   G  PDL +Y ++++GLC++   
Sbjct: 794 TGY-QPNTVTFNTLIHGLFLH-NKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 851

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             A     +M +  L P  + + T+  GL +   +     L K+++ + I
Sbjct: 852 DLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGI 901


>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 496

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 133/264 (50%), Gaps = 11/264 (4%)

Query: 6   IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEK 65
           +  +CK  ++  A+     M+++G +PNVVTY+ L++G C            K +  A+ 
Sbjct: 226 VSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYC----------LVKEVNKAKS 275

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           +F+ M   G+ PD+ S++I+++ + +      +++    M  + I P V TY+S++  LC
Sbjct: 276 IFNNMAQGGVNPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLC 335

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
             G+I  A +L+ EM   G  P   TY+            + A+ L  ++K+ GL  PNM
Sbjct: 336 KSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGL-QPNM 394

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
           ++Y ILI       R +  + I+ D+   G   ++++YT++IH  C    + EA     +
Sbjct: 395 YTYTILINGLCKGGRPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSK 454

Query: 246 MIEKGLLPQKVTFETLYRGLIQSD 269
           M E G +P  VT+E + R L   D
Sbjct: 455 MEENGCIPNAVTYEIIIRSLFDKD 478



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 11/191 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CKI   D A     EM  R + PNVVTYN L++G+C+             I 
Sbjct: 292 YNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGK----------IS 341

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ DEM  RG  PD+ ++S +L    + H    ++  L  +K++G+ P + TY+ ++
Sbjct: 342 YALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILI 401

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR EDA+ +  +++  G   +  TY      +        A+ +  +M+E+G C
Sbjct: 402 NGLCKGGRPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENG-C 460

Query: 182 VPNMHSYNILI 192
           +PN  +Y I+I
Sbjct: 461 IPNAVTYEIII 471



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 31/172 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           Y SLI G CK  +I  A + + EM +RG  P+++TY+ LL+ +C+    HP ++      
Sbjct: 327 YNSLIDGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKN---HPGDKAIALLT 383

Query: 56  -----------FEKTI-----------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93
                      +  TI            +A+ +F+++ V+G   +V ++++++HV+    
Sbjct: 384 KLKDQGLQPNMYTYTILINGLCKGGRPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNG 443

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
               +L  L+ M+E G  P   TY  +++ L      + AE+LL EM+  G+
Sbjct: 444 MFGEALAMLSKMEENGCIPNAVTYEIIIRSLFDKDENDKAEKLLLEMITRGL 495


>gi|255558584|ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540536|gb|EEF42103.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 439

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 143/281 (50%), Gaps = 12/281 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GW K   +  A     EM++ G  P++VTY ++++ +C+             + 
Sbjct: 162 YTILLEGWGKTPNLPKAREIFREMVDVGCSPDIVTYGIMVDILCKAGR----------VD 211

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  EM +   +P    +S+++H Y   ++ + ++D    M++ G+   VA Y++++
Sbjct: 212 EALDIVKEMDLTICKPTSFIYSVLIHTYGIENRIEDAVDTFLGMEKNGVKADVAAYNALI 271

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   + ++   +L EM   G+ P++ T N        R + + A +++R+M +  +C
Sbjct: 272 GAFCKVNKFKNVYRVLNEMDYKGMQPNSRTLNIILNNLIARGETDEAFRVFRRMIK--VC 329

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y ++I MF   N ++M  ++W  +K     P + ++++LI+GLCE+     AC 
Sbjct: 330 EPDADTYTMMIKMFCERNELEMALKVWKYMKKKHFVPSMHTFSVLINGLCEEGDVSHACV 389

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
              +MIEKG+ P  VTF  L   LI+         L++K++
Sbjct: 390 MLEDMIEKGIRPSGVTFGRLRHLLIKEGREDVLEFLQQKIN 430



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 126/291 (43%), Gaps = 46/291 (15%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           + +  +++ A      M +  V PN+  +N L + +C+           K +R A+++FD
Sbjct: 100 YARAQKLEEAVYTFNVMEKYDVPPNLAAFNGLFSALCK----------SKNVRKAQEIFD 149

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
             + R + PD  +++I+L  + +      + +    M + G  P + TY  +V  LC  G
Sbjct: 150 SSKDRFV-PDSKTYTILLEGWGKTPNLPKAREIFREMVDVGCSPDIVTYGIMVDILCKAG 208

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           R+++A +++ EM      P++  Y+     Y        A+  +  M+++G+   ++ +Y
Sbjct: 209 RVDEALDIVKEMDLTICKPTSFIYSVLIHTYGIENRIEDAVDTFLGMEKNGVKA-DVAAY 267

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLG------------------------------- 217
           N LIG F  +N+   V  + N++   G+                                
Sbjct: 268 NALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSRTLNIILNNLIARGETDEAFRVFRRMIK 327

Query: 218 ---PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
              PD D+YTM+I   CE+ + + A + +  M +K  +P   TF  L  GL
Sbjct: 328 VCEPDADTYTMMIKMFCERNELEMALKVWKYMKKKHFVPSMHTFSVLINGL 378



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/249 (19%), Positives = 107/249 (42%), Gaps = 39/249 (15%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           +V +F I++  Y+RA + + ++   N M++  + P +A ++ +   LC    +  A+E+ 
Sbjct: 89  NVETFCIIMRKYARAQKLEEAVYTFNVMEKYDVPPNLAAFNGLFSALCKSKNVRKAQEIF 148

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG------------------ 179
            +  ++   P ++TY    + +    +   A +++R+M + G                  
Sbjct: 149 -DSSKDRFVPDSKTYTILLEGWGKTPNLPKAREIFREMVDVGCSPDIVTYGIMVDILCKA 207

Query: 180 ----------------LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSY 223
                           +C P    Y++LI  +   NR++   + +  ++ +G+  D+ +Y
Sbjct: 208 GRVDEALDIVKEMDLTICKPTSFIYSVLIHTYGIENRIEDAVDTFLGMEKNGVKADVAAY 267

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLKK 279
             LI   C+  K+K   +   EM  KG+ P   T   +   LI      +  R +RR+ K
Sbjct: 268 NALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSRTLNIILNNLIARGETDEAFRVFRRMIK 327

Query: 280 KLDEESITF 288
             + ++ T+
Sbjct: 328 VCEPDADTY 336



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 34/195 (17%)

Query: 1   MYTSLIYGWCKINRI-DMAERFLGEMIERGVEPNVVTYNVLLNGVCR------------- 46
           +Y+ LI+ +   NRI D  + FLG M + GV+ +V  YN L+   C+             
Sbjct: 231 IYSVLIHTYGIENRIEDAVDTFLG-MEKNGVKADVAAYNALIGAFCKVNKFKNVYRVLNE 289

Query: 47  --RASLHPSERFEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ 94
                + P+ R    I N          A +VF  M ++  EPD  ++++++ ++   ++
Sbjct: 290 MDYKGMQPNSRTLNIILNNLIARGETDEAFRVFRRM-IKVCEPDADTYTMMIKMFCERNE 348

Query: 95  PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY-- 152
            +++L    +MK+K   P++ T+S ++  LC  G +  A  +L +M+  G+ PS  T+  
Sbjct: 349 LEMALKVWKYMKKKHFVPSMHTFSVLINGLCEEGDVSHACVMLEDMIEKGIRPSGVTFGR 408

Query: 153 --NCFFKEYRGRKDA 165
             +   KE  GR+D 
Sbjct: 409 LRHLLIKE--GREDV 421


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 142/293 (48%), Gaps = 26/293 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           YT+LIYG+C + ++  A   L EMI + + P V  YN+L+N +C+  ++  ++       
Sbjct: 188 YTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMT 247

Query: 60  -----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  ++NA+++F  M   G+ P+V S++I+++   +  +  
Sbjct: 248 KEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVD 307

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +++ L  M  K + P   TY+S++  LC  GRI  A  L+ EM   G      TY    
Sbjct: 308 EAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLL 367

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                 ++ + A  L+ +MKE G+  P M++Y  LI       R+   +E++  +   G 
Sbjct: 368 DALCKNQNLDKATALFMKMKERGI-QPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGC 426

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
             D+ +YT++I GLC++  + EA     +M + G +P  VTFE + R L + D
Sbjct: 427 CIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKD 479



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 137/281 (48%), Gaps = 11/281 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++I G CK   ++ A     EM  RG+ P+ +TY  L+ G C    L          
Sbjct: 152 MYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQL---------- 201

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + DEM ++ I P V  ++I+++   +    + + + L  M ++GI P V TYS++
Sbjct: 202 MGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTL 261

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G +++A+++   MV+ GV P+  +YN         K  + AM L R+M    +
Sbjct: 262 MDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNM 321

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VP+  +YN LI       R+     + N++   G   D+ +YT L+  LC+ Q   +A 
Sbjct: 322 -VPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKAT 380

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
             F++M E+G+ P   T+  L  GL +   L+  + L + L
Sbjct: 381 ALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHL 421



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 135/285 (47%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G CKI     A + L  + +R   PNVV YN +++G+C+          +K + 
Sbjct: 118 YGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCK----------DKLVN 167

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++ EM  RGI PD  +++ +++ +    Q   +   L+ M  K I P V  Y+ ++
Sbjct: 168 EAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILI 227

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +++A+ LL  M + G+ P   TY+     Y    +   A +++  M + G+ 
Sbjct: 228 NALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVN 287

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN++SYNI+I       R+D    +  ++    + PD  +Y  LI GLC+  +   A  
Sbjct: 288 -PNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALN 346

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM  +G     VT+ +L   L ++  L     L  K+ E  I
Sbjct: 347 LMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGI 391



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 135/298 (45%), Gaps = 26/298 (8%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI---- 60
           LI  +C + ++  +   LG++++ G +P+ +T N L+ G+C +  +  S  F   +    
Sbjct: 51  LINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQG 110

Query: 61  ---------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
                                R A K+   +  R   P+V  ++ ++    +      + 
Sbjct: 111 FQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAY 170

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           D  + M  +GI P   TY++++   C  G++  A  LL EM+   + P    YN      
Sbjct: 171 DLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINAL 230

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
               +   A  L   M ++G+  P + +Y+ L+  +  +  +   ++I++ +   G+ P+
Sbjct: 231 CKEGNVKEAKNLLAVMTKEGI-KPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPN 289

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           + SY ++I+GLC+ ++  EA     EM+ K ++P  VT+ +L  GL +S  + +   L
Sbjct: 290 VYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNL 347



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 101/215 (46%), Gaps = 15/215 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G CK  RI  A   + EM  RG   +VVTY  LL+ +C+  +L           
Sbjct: 328 YNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDK--------- 378

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F +M+ RGI+P + +++ ++    +  + + + +    +  KG C  V TY+ ++
Sbjct: 379 -ATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMI 437

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G  ++A  +  +M  NG  P+A T+    +    + + + A KL  +M   GL 
Sbjct: 438 SGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLL 497

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           V +    ++ +      N  D   ++ +++   GL
Sbjct: 498 VLDFKVADVFVQ-----NENDKAEKLLHEMIAKGL 527



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 108/258 (41%), Gaps = 11/258 (4%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
           P ++ +N +L  + +           K    A  +  +M V+GI  +  + +I+++ +  
Sbjct: 8   PPIIEFNKILGSLAKM----------KQYLTAISLSKQMEVKGIRANFVTLNILINCFCH 57

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
             Q   S   L  + + G  P   T ++++K LC  G ++ +     ++V  G      +
Sbjct: 58  LGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVS 117

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           Y           +   A+KL R M ED    PN+  YN +I        ++   ++++++
Sbjct: 118 YGTLLNGLCKIGETRCAVKLLR-MIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEM 176

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              G+ PD  +YT LI+G C   +   A     EMI K + P    +  L   L +   +
Sbjct: 177 DARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNV 236

Query: 272 RTWRRLKKKLDEESITFG 289
           +  + L   + +E I  G
Sbjct: 237 KEAKNLLAVMTKEGIKPG 254


>gi|356561955|ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Glycine max]
          Length = 622

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 155/297 (52%), Gaps = 16/297 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  ++ GW ++ ++   ER   EM E  + P VVTY  L+ G CR        R EK +
Sbjct: 279 VYNIMLNGWFRLRKLKQGERLWAEMKE-NMRPTVVTYGTLVEGYCRM------RRVEKAL 331

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               ++  +M   GI P+   ++ ++   + A + + +L  L       I PT +TY+S+
Sbjct: 332 ----EMVGDMTKEGIAPNAIVYNPIIDALAEAGRFKEALGMLERFHVLEIGPTDSTYNSL 387

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMKEDG 179
           VK  C  G +  A ++L  M+  G  PSA TYN FF+ + R RK   G M LY ++ + G
Sbjct: 388 VKGFCKAGDLVGASKILKMMISRGFLPSATTYNYFFRYFSRCRKIEEG-MNLYTKLIQSG 446

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              P+  +Y++L+ M     ++D+  ++  +++ +G   DL + TML+H LC+ ++ +EA
Sbjct: 447 Y-TPDRLTYHLLVKMLCEEEKLDLAVQVSKEMRHNGYDMDLATSTMLVHLLCKVRRLEEA 505

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYH 296
              F +MI +G++PQ +TF+ +   L +  M    ++L K +   S+ +     N +
Sbjct: 506 FVEFEDMIRRGIVPQYLTFQRMKADLKKQGMTEMAQKLCKLMS--SVPYSPNLPNTY 560



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 104/242 (42%), Gaps = 53/242 (21%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVF---DEMRVRGIEPDVTS 81
           +++ G E +++   +L++ +C+          E ++R A + F    E+ +  + P +  
Sbjct: 233 IVDSGSEMSLL--EILMDSLCK----------EGSVREASEYFLWKKELDLSWV-PSIRV 279

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           ++I+L+ + R  + +        MKE  + PTV TY ++V+  C   R+E A E++G+M 
Sbjct: 280 YNIMLNGWFRLRKLKQGERLWAEMKE-NMRPTVVTYGTLVEGYCRMRRVEKALEMVGDMT 338

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
           + G+ P+A  YN          DA         + E G        +   +GM    + +
Sbjct: 339 KEGIAPNAIVYNPII-------DA---------LAEAG-------RFKEALGMLERFHVL 375

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +             +GP   +Y  L+ G C+      A +    MI +G LP   T+   
Sbjct: 376 E-------------IGPTDSTYNSLVKGFCKAGDLVGASKILKMMISRGFLPSATTYNYF 422

Query: 262 YR 263
           +R
Sbjct: 423 FR 424



 Score = 44.3 bits (103), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 37/191 (19%), Positives = 79/191 (41%), Gaps = 31/191 (16%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
            V +F+I++  Y+RA   +L++    F              S+V    S   +   E L+
Sbjct: 200 SVGTFAIMIRRYARAGMSKLAIRTYEF---------ATNNKSIVD---SGSEMSLLEILM 247

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
             + + G    A  Y  + KE                   D   VP++  YNI++  +  
Sbjct: 248 DSLCKEGSVREASEYFLWKKEL------------------DLSWVPSIRVYNIMLNGWFR 289

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
           L ++     +W ++K   + P + +Y  L+ G C  ++ ++A +   +M ++G+ P  + 
Sbjct: 290 LRKLKQGERLWAEMK-ENMRPTVVTYGTLVEGYCRMRRVEKALEMVGDMTKEGIAPNAIV 348

Query: 258 FETLYRGLIQS 268
           +  +   L ++
Sbjct: 349 YNPIIDALAEA 359


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 141/282 (50%), Gaps = 18/282 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G C    +D A   +GEM E G+EPNVV Y+ LL G C+      S R+E    
Sbjct: 153 YGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCK------SGRWE---- 202

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  KVF EM  +GIEPDV  ++ ++    +  + + +   ++ M  +G+ P V TY+ ++
Sbjct: 203 DVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLI 262

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM-KEDGL 180
            C+C  G +++A  +L +M   GV P   TYN   K      + + AM L  +M +   +
Sbjct: 263 NCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNI 322

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+ ++N +I     + RM    ++   ++ +G   +L +Y +LI GL    K ++A 
Sbjct: 323 VKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAM 382

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQ-------SDMLRTWR 275
           +   EM   GL P   T+  L +G  +        D+L T R
Sbjct: 383 ELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMR 424



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 125/268 (46%), Gaps = 12/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + S+I G C I R+  A +    M E G   N+VTYN+L+ G+ R   +H        +R
Sbjct: 330 FNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLR---VH-------KVR 379

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ DEM   G+EPD  ++SI++  + +  Q   + D L+ M+++GI P +  Y  ++
Sbjct: 380 KAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLL 439

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G +E A  L  EM  N        Y+          D   A +L + + ++GL 
Sbjct: 440 VAMCEQGMMERARNLFNEM-DNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGL- 497

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y+I+I MF     M+    +   +  SG  PD+  +  LI G   K +  +  +
Sbjct: 498 TPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLE 557

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              EMI K +        TL   L+ S+
Sbjct: 558 LIREMITKNIALDSKIISTLSTSLVASN 585



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 129/276 (46%), Gaps = 31/276 (11%)

Query: 33  NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP------DVTSFSIVL 86
           + V+YN +L  +CRR              + ++    +R   +EP      +  S+++++
Sbjct: 76  DAVSYNTVLTALCRRG-------------HHDRAGALLRAMSLEPHPACRPNAVSYTVLM 122

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                      ++  L  M+  G+   V TY ++++ LC    ++ A EL+GEM  +G+ 
Sbjct: 123 RALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIE 182

Query: 147 PSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           P+   Y+   + Y   GR +  G  K++ +M E G+  P++  Y  LI     + +    
Sbjct: 183 PNVVVYSSLLQGYCKSGRWEDVG--KVFVEMSEKGI-EPDVVMYTGLIDSLCKVGKAKKA 239

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             + + +   GL P++ +Y +LI+ +C++   KEA     +M EKG+ P  VT+ TL +G
Sbjct: 240 HGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKG 299

Query: 265 L---IQSD----MLRTWRRLKKKLDEESITFGSEFQ 293
           L   ++ D    +L    R K  +    +TF S  Q
Sbjct: 300 LSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQ 335



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 134/338 (39%), Gaps = 88/338 (26%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT LI   CK+ +   A   +  M+ RG+EPNVVTYNVL+N +C+          E ++
Sbjct: 222 MYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCK----------EGSV 271

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE-----KGIC-PTV 114
           + A  V  +M  +G+ PDV +++ ++   S      L +D+  ++ E     K I  P V
Sbjct: 272 KEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDV----LEMDEAMWLLEEMVRGKNIVKPNV 327

Query: 115 ATYSSVVKCLCSCGR-----------------------------------IEDAEELLGE 139
            T++SV++ LC  GR                                   +  A EL+ E
Sbjct: 328 VTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDE 387

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA-- 197
           M   G+ P + TY+   K +      + A  L   M++ G+     H   +L+ M     
Sbjct: 388 MTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGM 447

Query: 198 -------LNRMD------------------------MVREIWNDVKGSGLGPDLDSYTML 226
                   N MD                          +E+   +   GL PD  +Y+++
Sbjct: 448 MERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIV 507

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           I+   +    + A     +M   G LP    F++L +G
Sbjct: 508 INMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQG 545



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 140/327 (42%), Gaps = 35/327 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMI---ERGVEPNVVTYNVLLNGVCRRASLHPSERFEK 58
           Y +++   C+    D A   L  M         PN V+Y VL+  +C       +    +
Sbjct: 80  YNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLR 139

Query: 59  TIRNAE-------------------------KVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93
           ++R+A                          ++  EM   GIEP+V  +S +L  Y ++ 
Sbjct: 140 SMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSG 199

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           + +        M EKGI P V  Y+ ++  LC  G+ + A  ++  MVR G+ P+  TYN
Sbjct: 200 RWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYN 259

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND-VK 212
                         A+ + ++M E G+  P++ +YN LI     +  MD    +  + V+
Sbjct: 260 VLINCMCKEGSVKEAIGVLKKMSEKGVA-PDVVTYNTLIKGLSDVLEMDEAMWLLEEMVR 318

Query: 213 GSGL-GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           G  +  P++ ++  +I GLC+  + ++A Q    M E G +   VT+  L  GL++   +
Sbjct: 319 GKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKV 378

Query: 272 RTWRRLKKKLDEESITFGSEFQNYHFK 298
           R    L     +E  + G E  ++ + 
Sbjct: 379 RKAMELM----DEMTSLGLEPDSFTYS 401


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 151/316 (47%), Gaps = 27/316 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------------- 48
           + SLIYG+C + ++  A   L EM    V PNV T+N+L++G+C+               
Sbjct: 232 FNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMI 291

Query: 49  ------------SLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                       SL       K +  A+ VF+ + +RG+ P+V S+S++++   +     
Sbjct: 292 KQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVD 351

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++     M  K + P   TYSS++  LC  GRI D  +L+ E+   G   +  TYN   
Sbjct: 352 EAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLL 411

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A+ L  +MK++G+  P+M +Y  L+       R+   + I+ D+   G 
Sbjct: 412 NGLCKNHQVDKAIALLTKMKDEGI-QPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGY 470

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWR 275
             ++  YT++I+GLC++  + EA     +M + G +P  VT+ETL   L +++   +  +
Sbjct: 471 PLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVK 530

Query: 276 RLKKKLDEESITFGSE 291
            L++ +  ES   G E
Sbjct: 531 LLREMIARESDCSGKE 546



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 139/281 (49%), Gaps = 11/281 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT++I  +CK   +  A     EMI + + PNVVT+N L+ G C    L          
Sbjct: 196 MYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQL---------- 245

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  + +EM +  + P+V +F+I++    +  + + +   L+ M ++G+ P V TY+S+
Sbjct: 246 KEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSL 305

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +        +  A+ +   +   GV P+  +Y+         K  + A+KL+++M    +
Sbjct: 306 MDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNM 365

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  +Y+ LI       R+  V ++ +++   G   ++ +Y  L++GLC+  +  +A 
Sbjct: 366 -TPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAI 424

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
               +M ++G+ P   T+ TL  GL ++  L+  +R+ + L
Sbjct: 425 ALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDL 465



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 139/288 (48%), Gaps = 16/288 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG---VEPNVVTYNVLLNGVCRRASLHPSERFEK 58
           Y +LI G CK      A + L ++   G   V P+V+ Y  +++  C+          +K
Sbjct: 161 YGTLINGLCKSGETRAALQLLRKI--EGLLLVRPDVIMYTAIIDSFCK----------DK 208

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            + +A  ++ EM V+ I P+V +F+ +++ +    Q + ++  LN M    + P V T++
Sbjct: 209 LVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFN 268

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++  LC  G ++ A  +L  M++ GV P+  TY      Y   K+ N A  ++  +   
Sbjct: 269 ILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLR 328

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  PN+HSY+++I        +D   +++ ++    + P+  +Y+ LI GLC+  +  +
Sbjct: 329 GV-TPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISD 387

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
                 E+  +G     +T+ +L  GL ++  +     L  K+ +E I
Sbjct: 388 VWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGI 435



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 107/232 (46%), Gaps = 37/232 (15%)

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
           +M ++GI+P++ +F+I+++ +S   Q   +   +  + + G  P   T +++++ LC  G
Sbjct: 78  QMELKGIQPEMFTFNILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNG 137

Query: 129 RIEDAEELLGEMVR--------------NGVCPSAET----------------------Y 152
           ++++A      ++R              NG+C S ET                      Y
Sbjct: 138 KVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMY 197

Query: 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
                 +   K    A  LY +M    +  PN+ ++N LI  F  + ++     + N++ 
Sbjct: 198 TAIIDSFCKDKLVIDAYDLYSEMIVKKI-YPNVVTFNSLIYGFCIVGQLKEAVGLLNEMS 256

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            + + P++ ++ +LI GLC++ + K+A      MI++G+ P  VT+ +L  G
Sbjct: 257 LNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDG 308



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 1/115 (0%)

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           A+   +QM+  G+  P M ++NILI  F  L +++    +   +   G  PD  +   L+
Sbjct: 72  AISFSQQMELKGI-QPEMFTFNILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLL 130

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
            GLC   K KEA  +   +I K     +V++ TL  GL +S   R   +L +K++
Sbjct: 131 RGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKIE 185


>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
 gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 143/281 (50%), Gaps = 12/281 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ GW K   +  A     EM+  G  P++VTY ++++ +C+             + 
Sbjct: 162 YSILLEGWGKDPNLPKAREIFREMVSNGCRPDIVTYGIMVDVLCKAGR----------VD 211

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + +EM     +P    +S+++H Y   ++ + ++     M+  GI P VA Y++++
Sbjct: 212 EALGIVNEMDSTVCKPTPFIYSVLVHTYGIENRIEDAVSTFLEMENNGIEPDVAVYNALI 271

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R+++   +L EM   GV P++ T+N       GR + + A +++ +M +  +C
Sbjct: 272 GAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSSLIGRGETDEAYRVFLRMIK--VC 329

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y ++I MF   + +    ++W  +K     P + ++ +LI+GLCEK    +AC 
Sbjct: 330 EPDADTYTMMIKMFCERDELKKALKVWKYMKLKRFMPSMHTFQVLINGLCEKGDVTQACV 389

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
              EMIEKG+ P  VTF  L + LI+       + L+KK++
Sbjct: 390 LLEEMIEKGIRPSGVTFGRLRQLLIKEGREDVLKFLQKKIN 430



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 109/217 (50%), Gaps = 2/217 (0%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           +V +F I++  Y+RA + + ++   N M +  + P +A ++ ++  LC    +  A+E+ 
Sbjct: 89  NVETFCIIMRKYARAQKVEEAVYTFNIMDKYDVPPNLAAFNGLLSALCKSKNVRKAQEIF 148

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            + +++   P ++TY+   + +    +   A +++R+M  +G C P++ +Y I++ +   
Sbjct: 149 -DSIKDRFVPDSKTYSILLEGWGKDPNLPKAREIFREMVSNG-CRPDIVTYGIMVDVLCK 206

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
             R+D    I N++  +   P    Y++L+H    + + ++A   F+EM   G+ P    
Sbjct: 207 AGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGIENRIEDAVSTFLEMENNGIEPDVAV 266

Query: 258 FETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           +  L     +++ L+   R+  ++D + +T  S   N
Sbjct: 267 YNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFN 303



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 11/152 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI  +CK NR+    R L EM  +GV PN  T+N++L+ +  R     + R     
Sbjct: 266 VYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSSLIGRGETDEAYR----- 320

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                VF  M ++  EPD  ++++++ ++    + + +L    +MK K   P++ T+  +
Sbjct: 321 -----VFLRM-IKVCEPDADTYTMMIKMFCERDELKKALKVWKYMKLKRFMPSMHTFQVL 374

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
           +  LC  G +  A  LL EM+  G+ PS  T+
Sbjct: 375 INGLCEKGDVTQACVLLEEMIEKGIRPSGVTF 406


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 150/298 (50%), Gaps = 22/298 (7%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            +T LI G CK  ++  A++ L  M  +G EP+++TYN L+NG+C    L           
Sbjct: 1193 FTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLE---------- 1242

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            +A K+F+ +  RGI+ +V S++I+++ Y +  +   +      M+ KG+ P+  TY++++
Sbjct: 1243 DATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLI 1302

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              LC  GR+  A++L  EM   G      TY               AM L++ +K+    
Sbjct: 1303 GALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTE-H 1361

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             PN+  ++IL+       +++   + ++++  +GL PD  +Y +LI+GLC K    EA +
Sbjct: 1362 KPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVK 1421

Query: 242  YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
               +M EKG LP  +TF  + + L++ + +            E+I    E +N +F P
Sbjct: 1422 LLWQMEEKGCLPDSITFNVIIQNLLKENEI-----------HEAIQLLEEMRNRNFSP 1468



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 150/334 (44%), Gaps = 51/334 (15%)

Query: 1    MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
            +Y+SL+ G C+  R+  A  F  EM  RG+  +V TYN L++G+ R         F    
Sbjct: 1122 VYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWF---- 1177

Query: 61   RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                   + M  RG  PD  +F+I++    +  +   +   L  M+ KG  P + TY+++
Sbjct: 1178 ------LNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTL 1231

Query: 121  VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
            +  LC  G++EDA +L   +   G+  +  +YN     Y   +  + A + + +M+  GL
Sbjct: 1232 MNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGL 1291

Query: 181  CVPNMHSYNILI----------------------GMFMALN-------------RMDMVR 205
              P+  +YN LI                      G F+ L+              ++   
Sbjct: 1292 -KPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAM 1350

Query: 206  EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            +++  +K +   P+++ +++L+ G+C   K +EA + F E+ + GL P  + +  L  GL
Sbjct: 1351 DLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGL 1410

Query: 266  IQSDMLRTWRRLKKKLDE-----ESITFGSEFQN 294
                ML    +L  +++E     +SITF    QN
Sbjct: 1411 CNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQN 1444



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 129/276 (46%), Gaps = 46/276 (16%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y  +I   CK      A     EMI  G+ P+VV Y+ L++G+CR   L          +
Sbjct: 1088 YGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRL----------K 1137

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             A + F EM  RGI  DV +++ ++H  SRA   +     LN M ++G  P   T++ ++
Sbjct: 1138 EALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILI 1197

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              LC  G++ +A+++L  M   G  P   TYN                        +GLC
Sbjct: 1198 DGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLM---------------------NGLC 1236

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
                     L+G      +++   +++  +   G+  ++ SY +LI+G C+ QK  EA +
Sbjct: 1237 ---------LVG------QLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFR 1281

Query: 242  YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            +F EM  KGL P  VT+ TL   L QS  +RT ++L
Sbjct: 1282 FFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKL 1317



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 123/250 (49%), Gaps = 11/250 (4%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y  LI G+CK  +ID A RF  EM  +G++P+ VTYN L+  +C+             +R
Sbjct: 1263 YNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGR----------VR 1312

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             A+K+F EM+  G    ++++ ++L    +    + ++D    +K+    P +  +S ++
Sbjct: 1313 TAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILL 1372

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              +C  G++E+A +   E+ +NG+ P    YN        +   + A+KL  QM+E G C
Sbjct: 1373 DGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKG-C 1431

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            +P+  ++N++I   +  N +    ++  +++     PD    +ML+       +W  A  
Sbjct: 1432 LPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLASFDPQWHAALV 1491

Query: 242  YFVEMIEKGL 251
                 ++KG+
Sbjct: 1492 SLPNALQKGV 1501



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 137/286 (47%), Gaps = 20/286 (6%)

Query: 5    LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
            LI+  C +  +       G  ++RG EP+ VT   L+ GV            E  I +A 
Sbjct: 987  LIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVW----------MENGIPDAV 1036

Query: 65   KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP-TVATYSSVVKC 123
            ++FDEM  +G+  D  ++ I+++   +A +  L++ KL+  K KG C   V TY  ++  
Sbjct: 1037 QLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAI-KLH-EKMKGNCKGDVFTYGMIIDA 1094

Query: 124  LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            LC  G   +A ++  EM+  G+ P    Y+              A++ +++M+  G+   
Sbjct: 1095 LCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISA- 1153

Query: 184  NMHSYNILIGMFMALNRMDMVREI-W--NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            ++++YN LI     L+R  + +E+ W  N +   G  PD  ++T+LI GLC++ K  EA 
Sbjct: 1154 DVYTYNSLI---HGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQ 1210

Query: 241  QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            Q    M  KG  P  +T+ TL  GL     L    +L + L +  I
Sbjct: 1211 QILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGI 1256



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 108/249 (43%), Gaps = 10/249 (4%)

Query: 47   RASLHPSERFEK--------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLS 98
            +ASL P ER+ +         + +A K+FD        P   +F+ +L   ++       
Sbjct: 906  KASLSPFERYVRDQCRFGIIKLNDAIKLFDRSLCSEPMPCTDTFNHLLASVAKLGYYSTV 965

Query: 99   LDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158
                  + + GI P + T + ++ C CS   +     + G  ++ G  P A T     K 
Sbjct: 966  FPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKG 1025

Query: 159  YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218
                     A++L+ +M + GL + +  +Y ILI       +  +  ++   +KG+  G 
Sbjct: 1026 VWMENGIPDAVQLFDEMTKKGL-LGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKG- 1083

Query: 219  DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
            D+ +Y M+I  LC+     EA   F EMI  G+LP  V + +L  GL +   L+      
Sbjct: 1084 DVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFF 1143

Query: 279  KKLDEESIT 287
            K+++   I+
Sbjct: 1144 KEMEGRGIS 1152



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 66/126 (52%), Gaps = 11/126 (8%)

Query: 1    MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
            +++ L+ G C+  +++ A +   E+ + G+EP+ + YN+L+NG+C +  L          
Sbjct: 1367 VFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLS--------- 1417

Query: 61   RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              A K+  +M  +G  PD  +F++++    + ++   ++  L  M+ +   P  A  +S+
Sbjct: 1418 -EAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAV-TSM 1475

Query: 121  VKCLCS 126
            + CL S
Sbjct: 1476 LLCLAS 1481



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 100/228 (43%), Gaps = 16/228 (7%)

Query: 54   ERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKL----------N 103
            + F +T+  AE+ +D  +++ I P   + S    +  ++  P  SL  L          N
Sbjct: 840  DEFARTLLRAEQGYDYWKIKHI-PKKNAASSSRSILQKSDIPX-SLSSLFKNPPQRSGSN 897

Query: 104  FMKEK-GICPTVATYSSVVKCLCSCG--RIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160
               EK G   +++ +   V+  C  G  ++ DA +L    + +   P  +T+N       
Sbjct: 898  SKSEKIGTKASLSPFERYVRDQCRFGIIKLNDAIKLFDRSLCSEPMPCTDTFNHLLASVA 957

Query: 161  GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
                 +    +YR++ + G+  P++++ NILI    +L  +     ++      G  PD 
Sbjct: 958  KLGYYSTVFPMYRKINDVGI-QPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDA 1016

Query: 221  DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             + T L+ G+  +    +A Q F EM +KGLL    T+  L  GL ++
Sbjct: 1017 VTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKA 1064


>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Brachypodium distachyon]
          Length = 547

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 143/281 (50%), Gaps = 11/281 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GW     + M +    EM++ G++P+VV Y  L++  C+      S + ++ I 
Sbjct: 269 YTVLMEGWGHEKDLLMLKSVYQEMLDAGIKPDVVAYGTLISSFCK------SGKCDEAI- 321

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              KVF EM   G  P    + ++++      +   +L      K  G    V T ++VV
Sbjct: 322 ---KVFREMEANGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVV 378

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   + + A +++ EM + G+ P+A TY+   +     +    A  ++++M  +G C
Sbjct: 379 GAYCRSSKFQHAFKMVDEMRKTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEG-C 437

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P +++Y +++GMF +  R+DM  ++W  +K  G+ P +  ++ LI+GLC + + +EAC 
Sbjct: 438 EPQLNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSSLINGLCFENRLEEACV 497

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           YF EM++KG+ P    F  L   LI+   +   + +  KLD
Sbjct: 498 YFQEMLDKGIRPPGQLFSNLKEALIEGGRISLAQDMALKLD 538



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 89/195 (45%), Gaps = 1/195 (0%)

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
           R +G      SF  ++    +  Q +L    +  M+ +G+  +  T+  +V+      ++
Sbjct: 153 RQQGFRYTAESFHNLIEALGKIKQFRLVWSLVEAMRCRGLL-SKDTFRLIVRRYARARKV 211

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           ++A E   +M   G+      YN         K    A  ++++MK +G  VP++ +Y +
Sbjct: 212 KEAVETFEKMSSFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTV 271

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           L+  +     + M++ ++ ++  +G+ PD+ +Y  LI   C+  K  EA + F EM   G
Sbjct: 272 LMEGWGHEKDLLMLKSVYQEMLDAGIKPDVVAYGTLISSFCKSGKCDEAIKVFREMEANG 331

Query: 251 LLPQKVTFETLYRGL 265
            +P    +  L  GL
Sbjct: 332 CMPSPHVYCMLINGL 346


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 145/302 (48%), Gaps = 11/302 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+C++  +  A     +M  R + P+ +TYN L+NG+C+           + +
Sbjct: 371 IYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKL----------EMV 420

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE +  EM   G++P V +F+ ++  Y  A Q +     L+ M++KGI   V ++ SV
Sbjct: 421 TKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSV 480

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           VK  C  G+I +A  +L +M+   V P+A+ YN     Y    D   A+ L  +MK  G+
Sbjct: 481 VKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGV 540

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              ++ +YN+L+      +++D   E+   ++  GL PD+ SY  +I   C K    +A 
Sbjct: 541 SA-SIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKAL 599

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
           +   EM + G+ P   T  TL   L  +  +     L +++  +++   S         Y
Sbjct: 600 ELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAY 659

Query: 301 RR 302
            R
Sbjct: 660 VR 661



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 132/301 (43%), Gaps = 44/301 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G  K   ++   R   +M+  G +PNVVTYNVLL+G+CR      + R ++T  
Sbjct: 232 YNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCR------TGRMDET-- 283

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + DEM    + PD  ++SI+    +R  + Q  L       +KG+     T S ++
Sbjct: 284 --RALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILL 341

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
             LC  G++  A+++   +V  G+ P+   YN     Y   +D  GA  ++ QMK     
Sbjct: 342 NGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIR 401

Query: 178 ----------DGLCV--------------------PNMHSYNILIGMFMALNRMDMVREI 207
                     +GLC                     P++ ++N LI  +    +++    +
Sbjct: 402 PDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTV 461

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            +D++  G+  D+ S+  ++   C+  K  EA     +MI K + P    + ++    I+
Sbjct: 462 LSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIE 521

Query: 268 S 268
           S
Sbjct: 522 S 522



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 59/319 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHP-----SERF 56
           Y  L+ G C+  R+D     + EM    + P+  TY++L +G+ R           +E  
Sbjct: 267 YNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESL 326

Query: 57  EK--------------------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +K                     +  A++VF+ +   G+ P    ++ +++ Y +    +
Sbjct: 327 KKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLR 386

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      MK + I P   TY++++  LC    +  AE+L+ EM ++GV PS ET+N   
Sbjct: 387 GAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLI 446

Query: 157 KEYRGRKDANGAMKLYRQMKEDGL----------------------------------CV 182
             Y           +   M++ G+                                    
Sbjct: 447 DAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVA 506

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN   YN +I  ++     +    +   +K SG+   + +Y +L+ GLC   +  EA + 
Sbjct: 507 PNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEEL 566

Query: 243 FVEMIEKGLLPQKVTFETL 261
              +  +GL P  V++ T+
Sbjct: 567 IYTLRNQGLRPDVVSYNTI 585



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 90/189 (47%), Gaps = 10/189 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y S+I  + +    + A   + +M   GV  ++VTYN+LL G+CR + +  +E    T+
Sbjct: 511 VYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTL 570

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           RN          +G+ PDV S++ ++           +L+ L  M + GI PT+ T  ++
Sbjct: 571 RN----------QGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTL 620

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  L S GR+ D E L  +M+   V PS+  Y      Y   ++ +    L ++M E G+
Sbjct: 621 VSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGI 680

Query: 181 CVPNMHSYN 189
              +    N
Sbjct: 681 AFDDTKRSN 689



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 132/303 (43%), Gaps = 20/303 (6%)

Query: 7   YGWCKI-------NRIDMAERFLGEM--IERGVEPNVVTYNVLLNGVCRRASLHPSERFE 57
           + W K+         +D+A   L  M   E    P+  +YNV++ G+ R           
Sbjct: 158 FAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGK-------- 209

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
               +A KVFDEM   G+ P+  +++ ++  + +    +      + M   G  P V TY
Sbjct: 210 --GSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTY 267

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + ++  LC  GR+++   L+ EM  + + P   TY+  F       ++   + L+ +  +
Sbjct: 268 NVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLK 327

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G+ +   ++ +IL+       ++   ++++  +  +GL P    Y  LI+G C+ +  +
Sbjct: 328 KGVML-GAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLR 386

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
            A   F +M  + + P  +T+  L  GL + +M+     L  ++++  +    E  N   
Sbjct: 387 GAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLI 446

Query: 298 KPY 300
             Y
Sbjct: 447 DAY 449



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 85/231 (36%), Gaps = 38/231 (16%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFM--KEKGICPTVATYSS 119
           +    F  +   G  PD  +++ V+     A    ++L  L  M   E    P   +Y+ 
Sbjct: 140 DVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNV 199

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           V+  L   G+  DA ++  EMV  GV P+  TYN     +    D     +L  QM  DG
Sbjct: 200 VIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDG 259

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              PN+ +YN+                                   L+ GLC   +  E 
Sbjct: 260 P-KPNVVTYNV-----------------------------------LLSGLCRTGRMDET 283

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
                EM    +LP   T+  L+ GL ++   +T   L  +  ++ +  G+
Sbjct: 284 RALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGA 334


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 139/261 (53%), Gaps = 15/261 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTI 60
           Y +LI G+CK   ++ A + L EM ERG  P+VVT++ ++  +C   +L  + + F +++
Sbjct: 108 YNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESV 167

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A             PD   F+I++H   +A+Q   +   +  M E+GI P V TY+S+
Sbjct: 168 ECA-------------PDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSL 214

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   R+E+A +LL  MV+  V P+  TYN     Y        A +L  +M + G 
Sbjct: 215 IDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGT 274

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ ++N LI  F   +++D   E+ + +K     P+L +Y +LI GLC+  +  EAC
Sbjct: 275 -HPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEAC 333

Query: 241 QYFVEMIEKGLLPQKVTFETL 261
           +   EM  +G+LP  +T+ +L
Sbjct: 334 ELLSEMDGRGILPDIITYNSL 354



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 146/278 (52%), Gaps = 13/278 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++  L++G CK N++  A + + EM ERG+ P+VVTYN L++G+C+      S R E+  
Sbjct: 175 LFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCK------SYRMEE-- 226

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++ + M  R + P++ +++ +++ Y +     L+   +  M + G  P V T++S+
Sbjct: 227 --ARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSL 284

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +   C   +I+ A E+L  +++ G+C P+  TYN           AN A +L  +M   G
Sbjct: 285 ISGFCQKSKIDKACEVL-HLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRG 343

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           + +P++ +YN LIG+F    +++   +I N +   G+ PD  SY  L   L + +++ EA
Sbjct: 344 I-LPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEA 402

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
                 M + G +P   TF +L  GL  S  L   R L
Sbjct: 403 FALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHL 440



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 122/271 (45%), Gaps = 26/271 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LIYG+CK     +A + +  MI+ G  P+VVT+N L++G C+++ +  +      ++
Sbjct: 246 YNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMK 305

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     A ++  EM  RGI PD+ +++ ++ ++ R  Q +
Sbjct: 306 KGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIE 365

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    N M E+G+ P   +Y ++   L    R ++A  LL  M   G  P+  T+N   
Sbjct: 366 QAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLM 425

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           +     +  + A  L   M+  G C P   +Y +L+       R+D  +E+   +   G+
Sbjct: 426 EGLCCSRRLDEARHLLAVMRRVG-CDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGI 484

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
            P + S   ++H L  + K   A  YF +++
Sbjct: 485 QPLVSSSGTIVHTLAREGKQDLALHYFDQVV 515



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 43/185 (23%)

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           TY++++   C  G +E A +LL EM   G  P   T++   +      + + AM+ +R+ 
Sbjct: 107 TYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRES 166

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            E   C P+   +NIL+                                   HGLC+  +
Sbjct: 167 VE---CAPDSVLFNILV-----------------------------------HGLCKANQ 188

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGS 290
             EA Q   EM E+G++P  VT+ +L  GL +S  +   R+L     K+K+    +T+ +
Sbjct: 189 LSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNT 248

Query: 291 EFQNY 295
               Y
Sbjct: 249 LIYGY 253


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 138/268 (51%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+  +CK  ++   +     M+++G++PN VTYN L++G C            K + 
Sbjct: 298 FNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYC----------LVKEVN 347

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F+ M   G+ PD+ S+SI+++ + +  +   +++    M  K I P V TYSS++
Sbjct: 348 KAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLI 407

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GRI  A +L+ +M   GV P+  TYN            + A+ L  ++K+ G+ 
Sbjct: 408 DGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGI- 466

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PNM++Y+ILI       +++  R+++  +   G   ++D+YT++I G C +  + EA  
Sbjct: 467 QPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALA 526

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              +M + G +P   T+E +   L + D
Sbjct: 527 LLSKMEDNGCIPDAKTYEIIILSLFKKD 554



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 141/277 (50%), Gaps = 11/277 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++I   CK+  ++ A     EMI +G+ P+VVTY+ L++G C    L+         
Sbjct: 227 MYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLN--------- 277

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A  +F++M +  I+PDV +F+I+++ + +  + +      + M ++GI P   TY+S+
Sbjct: 278 -DAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSL 336

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C    +  A+ +   M + GV P  ++Y+     +   K  + AM L+++M    +
Sbjct: 337 MDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNI 396

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +P++ +Y+ LI       R+    ++ + +   G+ P + +Y  ++  LC+  +  +A 
Sbjct: 397 -IPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAI 455

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
               ++ +KG+ P   T+  L +GL QS  L   R++
Sbjct: 456 ALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKV 492



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 141/289 (48%), Gaps = 19/289 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR----RASLHPSERFE 57
           +T+LI G C   +I  A  F  +++  G   + ++Y  L++G+C+    RA+L   +R +
Sbjct: 158 FTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVD 217

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
             +              ++P+V  ++ ++    +      + D  + M  KGI P V TY
Sbjct: 218 GNL--------------VQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTY 263

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           S+++   C  G++ DA +L  +M+   + P   T+N     +           ++  M +
Sbjct: 264 SALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMK 323

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G+  PN  +YN L+  +  +  ++  + I+N +   G+ PD+ SY+++I+G C+ +K+ 
Sbjct: 324 QGI-KPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFD 382

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           EA   F EM  K ++P  VT+ +L  GL +S  +    +L  ++ +  +
Sbjct: 383 EAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGV 431



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 141/285 (49%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G CK+     A   L  +    V+PNVV YN +++ +C+           K + 
Sbjct: 193 YGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKV----------KLVN 242

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM  +GI PDV ++S ++  +    +   ++D  N M  + I P V T++ +V
Sbjct: 243 EAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILV 302

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++++ + +   M++ G+ P+  TYN     Y   K+ N A  ++  M + G+ 
Sbjct: 303 NAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVN 362

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SY+I+I  F  + + D    ++ ++    + PD+ +Y+ LI GL +  +   A Q
Sbjct: 363 -PDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQ 421

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              +M ++G+ P   T+ ++   L +   +     L  KL ++ I
Sbjct: 422 LVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGI 466



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 97/214 (45%), Gaps = 45/214 (21%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I G+CKI + D A     EM  + + P+VVTY+ L++G+ +             I 
Sbjct: 368 YSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGR----------IS 417

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D+M  RG+ P + +++ +L    + HQ   ++  L  +K+KGI P + TYS ++
Sbjct: 418 YALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILI 477

Query: 122 KCLCSCGRIEDAEE-----------------------------------LLGEMVRNGVC 146
           K LC  G++EDA +                                   LL +M  NG  
Sbjct: 478 KGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCI 537

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           P A+TY         + + + A KL R+M   G+
Sbjct: 538 PDAKTYEIIILSLFKKDENDMAEKLLREMIARGV 571



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 1/181 (0%)

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
            NF+          +YSS      S   ++DA  L   ++R    P A  +N        
Sbjct: 38  FNFIPYSSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVK 97

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
            K  +  + L ++M+  G+  PN+ + NILI  F  L  +     ++  +   G  PD  
Sbjct: 98  SKHYHTVLYLSQKMEFRGI-KPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTI 156

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           ++T LI GLC K + ++A  +  +++  G    ++++ TL  GL +    R    L +++
Sbjct: 157 TFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRV 216

Query: 282 D 282
           D
Sbjct: 217 D 217


>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
 gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 439

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 143/281 (50%), Gaps = 12/281 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI GW +   +  A     EMI+ G  P+ VTY+++++ +C+             + 
Sbjct: 162 YSILIEGWGRAPNLPKAREIYREMIDSGCIPDEVTYSIMVDVLCKAGR----------VD 211

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++  EM     +P    +S+++H Y   ++ + ++     M+  G+   VA Y++++
Sbjct: 212 EAVEIVKEMDYNNCKPSSFIYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALI 271

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   ++++   +L +M   GV P++ T N       GR + + A K++R+M +  +C
Sbjct: 272 SAFCKANKMKNVYRVLKDMDLKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRMIK--VC 329

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SY ++I MF     +DM  +IW  +K     P + ++++LI+GLC+     +AC 
Sbjct: 330 EPDVDSYTMIIKMFCGRKELDMALKIWKYMKKKQFVPSMHTFSVLINGLCQIGNATQACV 389

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
              EMIEKG+ P   TF  L   LI+       + L++K++
Sbjct: 390 LLEEMIEKGIRPSGATFGRLRHLLIKEGRKDVLKFLQEKMN 430



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 131/293 (44%), Gaps = 46/293 (15%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           + +  +++ A      M +  ++PNV  +N LL+ +C+           K +R A+++FD
Sbjct: 100 YARAQKVEEAVYTFNVMEKYNMKPNVAAFNGLLSALCK----------SKNVRKAQEIFD 149

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
            M+ + + PD  ++SI++  + RA     + +    M + G  P   TYS +V  LC  G
Sbjct: 150 NMKDQFV-PDSKTYSILIEGWGRAPNLPKAREIYREMIDSGCIPDEVTYSIMVDVLCKAG 208

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           R+++A E++ EM  N   PS+  Y+     Y        A+  + +M+ +G+ + ++ +Y
Sbjct: 209 RVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYGVENRIEDAVSTFLEMERNGV-MADVAAY 267

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLG------------------------------- 217
           N LI  F   N+M  V  +  D+   G+                                
Sbjct: 268 NALISAFCKANKMKNVYRVLKDMDLKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRMIK 327

Query: 218 ---PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              PD+DSYTM+I   C +++   A + +  M +K  +P   TF  L  GL Q
Sbjct: 328 VCEPDVDSYTMIIKMFCGRKELDMALKIWKYMKKKQFVPSMHTFSVLINGLCQ 380



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 118/234 (50%), Gaps = 6/234 (2%)

Query: 60  IRNAEKVFD---EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           IR  + V+D    MR + I  +V +F I++  Y+RA + + ++   N M++  + P VA 
Sbjct: 69  IRQYQMVWDLVNAMRNKEI-LNVEAFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAA 127

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           ++ ++  LC    +  A+E+   M ++   P ++TY+   + +    +   A ++YR+M 
Sbjct: 128 FNGLLSALCKSKNVRKAQEIFDNM-KDQFVPDSKTYSILIEGWGRAPNLPKAREIYREMI 186

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           + G C+P+  +Y+I++ +     R+D   EI  ++  +   P    Y++L+H    + + 
Sbjct: 187 DSG-CIPDEVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYGVENRI 245

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
           ++A   F+EM   G++     +  L     +++ ++   R+ K +D + +   S
Sbjct: 246 EDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNS 299



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 32/193 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL---------- 50
           +Y+ L++ +   NRI+ A     EM   GV  +V  YN L++  C+   +          
Sbjct: 231 IYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDM 290

Query: 51  -----HPSERFEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                +P+ R    I N          A K+F  M ++  EPDV S+++++ ++    + 
Sbjct: 291 DLKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRM-IKVCEPDVDSYTMIIKMFCGRKEL 349

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY--- 152
            ++L    +MK+K   P++ T+S ++  LC  G    A  LL EM+  G+ PS  T+   
Sbjct: 350 DMALKIWKYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSGATFGRL 409

Query: 153 -NCFFKEYRGRKD 164
            +   KE  GRKD
Sbjct: 410 RHLLIKE--GRKD 420


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 145/288 (50%), Gaps = 17/288 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G C  +R   A R L +MI++ + PNV+TY+ LL+   +             + 
Sbjct: 228 YTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK----------VL 277

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLH---VYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A+++F+EM    I+PD+ ++S +++   ++ R  +     D    M  KG    V +Y+
Sbjct: 278 EAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFD---LMVSKGCLADVVSYN 334

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++   C   R+ED  +L  EM + G+  +  TYN   + +    D + A + + QM   
Sbjct: 335 TLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFF 394

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P++ +YNIL+G       ++    I+ D++   +  D+ +YT +I G+C+  K +E
Sbjct: 395 GIS-PDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEE 453

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           A   F  +  KGL P  VT+ T+  GL    +L     L  K+ +E +
Sbjct: 454 AWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL 501



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 138/267 (51%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I   CK  R++ A  F  E+  +G+ PNVVTY  L+NG+C       S R+     
Sbjct: 193 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCN------SSRWS---- 242

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  +M  + I P+V ++S +L  + +  +   + +    M    I P + TYSS++
Sbjct: 243 DAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLI 302

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   RI++A ++   MV  G      +YN     +   K     MKL+R+M + GL 
Sbjct: 303 NGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGL- 361

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V N  +YN LI  F     +D  +E ++ +   G+ PD+ +Y +L+ GLC+  + ++A  
Sbjct: 362 VSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALV 421

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F +M ++ +    VT+ T+ RG+ ++
Sbjct: 422 IFEDMQKREMDLDIVTYTTVIRGMCKT 448



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 138/267 (51%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +I  +C   ++ +A   LG+M++ G EP+ VT   L+NG CRR            + 
Sbjct: 123 FNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRR----------NRVS 172

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  + D+M   G +PD+ +++ ++    +  +   + D    ++ KGI P V TY+++V
Sbjct: 173 DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALV 232

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+  R  DA  LL +M++  + P+  TY+     +        A +L+ +M    + 
Sbjct: 233 NGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSI- 291

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ LI      +R+D   ++++ +   G   D+ SY  LI+G C+ ++ ++  +
Sbjct: 292 DPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMK 351

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F EM ++GL+   VT+ TL +G  Q+
Sbjct: 352 LFREMSQRGLVSNTVTYNTLIQGFFQA 378



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 142/322 (44%), Gaps = 51/322 (15%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           +++ A     +M++    P++V +N LL+ + +       ++++  I   +K    M V 
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKL------KKYDVVISLGKK----MEVL 114

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           GI  D+ +F+IV++ +    Q  L+L  L  M + G  P   T  S+V   C   R+ DA
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             L+ +MV  G  P    YN         K  N A   +++++  G+  PN+ +Y  L+ 
Sbjct: 175 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGI-RPNVVTYTALVN 233

Query: 194 MFMALNR--------MDMV---------------------------REIWNDVKGSGLGP 218
                +R         DM+                           +E++ ++    + P
Sbjct: 234 GLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDP 293

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTW 274
           D+ +Y+ LI+GLC   +  EA Q F  M+ KG L   V++ TL  G  ++    D ++ +
Sbjct: 294 DIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLF 353

Query: 275 RRLKKK-LDEESITFGSEFQNY 295
           R + ++ L   ++T+ +  Q +
Sbjct: 354 REMSQRGLVSNTVTYNTLIQGF 375



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 134/293 (45%), Gaps = 21/293 (7%)

Query: 18  AERFLG-EMIERGVEPNVVTYNVLLNGVCR---RASLHPS-----ERFEKT------IRN 62
           A+RFL   ++E G      + +      CR   RAS   S     ER  KT      + +
Sbjct: 9   AKRFLHRNLLENGKPRTASSPSFSHCSSCRCWVRASSSVSGGDLRERLSKTRLRDIKLND 68

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  +F +M      P +  F+ +L    +  +  + +     M+  GI   + T++ V+ 
Sbjct: 69  AIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVIN 128

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
           C C C ++  A  +LG+M++ G  P   T       +  R   + A+ L  +M E G   
Sbjct: 129 CFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGY-K 187

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ +YN +I       R++   + + +++  G+ P++ +YT L++GLC   +W +A + 
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 247

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGS 290
             +MI+K + P  +T+  L    +++  +   + L     +  +D + +T+ S
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSS 300


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 137/287 (47%), Gaps = 21/287 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA----------SLH 51
           Y  L+   CK NR+D A + L EM  +G +P+ V+Y  L++ +C+            S  
Sbjct: 184 YNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFT 243

Query: 52  PSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK 101
           PS             E T   A ++ DEM  +GI+P+V S++ +++  S A   +LSL  
Sbjct: 244 PSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAV 303

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
           L  M  +G  P + T++S++K     G   +A +    M+R GV P+   YN        
Sbjct: 304 LAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCS 363

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
           ++    A+ ++ QM+ +G C PN+ +Y+ LI  +     +D   E+WN +   G  P++ 
Sbjct: 364 KRSLGDAVSVFNQMEING-CCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVV 422

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           +YT ++  LC    + +A      M  +   P  VTF T  +GL  S
Sbjct: 423 AYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGS 469



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 120/256 (46%), Gaps = 11/256 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSLI G+        A  F   MI  GV PNVV YN L++G+C + SL           
Sbjct: 319 FTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSL----------G 368

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  VF++M + G  P+V ++S ++  Y++A     + +  N+M   G  P V  Y+ +V
Sbjct: 369 DAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMV 428

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC       A  L+  M      P+  T+N F K   G    + A+K++ QM   G C
Sbjct: 429 DVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSG-C 487

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +YN L+   +   R      +  D++  G+  +L +Y  +I+G C      EA +
Sbjct: 488 FPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALE 547

Query: 242 YFVEMIEKGLLPQKVT 257
              +M+ +G  P  +T
Sbjct: 548 LLGKMVVRGTKPDAIT 563



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 125/267 (46%), Gaps = 11/267 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G CK    + A + L EM+ +G++PNV++Y  ++N +    ++  S       
Sbjct: 248 VYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELS------- 300

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                V  +M  RG  P++ +F+ ++  +        +LD  + M  +G+ P V  Y+++
Sbjct: 301 ---LAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNAL 357

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LCS   + DA  +  +M  NG CP+  TY+     Y    D +GA +++  M   G 
Sbjct: 358 MHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHG- 416

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN+ +Y  ++ +    +  +    +  +++     P+  ++   I GLC   +   A 
Sbjct: 417 CHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAI 476

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           + F +M   G  P   T+  L   L++
Sbjct: 477 KVFDQMGNSGCFPNTTTYNELLDSLLK 503



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 6/209 (2%)

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           E+ +   + +  +M++ GI      F  V+  Y RA   + +L     M++  + PTV  
Sbjct: 89  EREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKI 148

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+ ++  L    R +    +   M ++G+ P+  TYN   K        +GA KL  +M 
Sbjct: 149 YNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMS 208

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G C P+  SY  LI     L ++   RE+          P +  Y  LI+G+C++  +
Sbjct: 209 SKG-CDPDEVSYTTLISSLCKLGKVKEAREL-----AMSFTPSVPVYNALINGVCKEYTF 262

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +EA Q   EM+ KG+ P  +++ T+   L
Sbjct: 263 EEAFQLLDEMMNKGIDPNVISYTTIINAL 291



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 2/194 (1%)

Query: 85  VLHVYSRAHQPQLSLDKL-NFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
           VL      H   L+L+   +    K    T  TY  +++ L S   ++  + LL +M   
Sbjct: 46  VLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLE 105

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+  S + +      YR    +  A+K + +M +D    P +  YN ++   +  NR  M
Sbjct: 106 GISCSEDLFISVIGSYRRAGSSEQALKTFYRM-QDFRVKPTVKIYNHILDALLDENRFQM 164

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
           +  I++++K  G+ P++ +Y +L+  LC+  +   A +  VEM  KG  P +V++ TL  
Sbjct: 165 INPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLIS 224

Query: 264 GLIQSDMLRTWRRL 277
            L +   ++  R L
Sbjct: 225 SLCKLGKVKEAREL 238



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 10/170 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+    K  R   A   + +M  RG+E N+VTYN ++ G C    L           
Sbjct: 494 YNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGML----------G 543

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++  +M VRG +PD  + +IV+  Y +  +  +++  ++ +      P +  Y+S++
Sbjct: 544 EALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLI 603

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
             +C+   +E+A   L  M+  G+ P+  T+N   +        +GA++ 
Sbjct: 604 SGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQF 653


>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Glycine max]
          Length = 678

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 145/273 (53%), Gaps = 11/273 (4%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
            +R  G++I  G+  NV +YN+++N  CR           K + NA + F +M+VRG+ P
Sbjct: 413 GDRVYGQLISDGLISNVFSYNMIINCFCR----------AKLMDNASEAFRDMQVRGVVP 462

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           ++ +F+ +++ + +      +   L  + E G+ P + T+SS+V  LC   R E+A E  
Sbjct: 463 NLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECF 522

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            EM+  G+ P+A  YN   +      D   ++KL R+M+++G+  P+ +SYN LI +F  
Sbjct: 523 TEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGIS-PDTYSYNALIQIFCR 581

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
           +N+++  +++++ +  SGL PD  +Y+  I  L E  + +EA + F  M   G  P    
Sbjct: 582 MNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYI 641

Query: 258 FETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
              + + L+Q + +   + + ++  ++ I+  S
Sbjct: 642 CNLIIKILVQQEYVEEAQNIIERCRQKGISLNS 674



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 133/311 (42%), Gaps = 61/311 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G CK+  +D A R + +M ++G  PNV TY +L+ G C              + 
Sbjct: 217 YNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFC----------IASRVD 266

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL-------------DKLNFM--- 105
            A  VF+ M+  G+ P+  +   ++H   R   P  +L             ++++FM   
Sbjct: 267 EAFGVFETMKDSGVYPNEATVRALVHGVFRCVDPSKALELLSEFLDREQEQERVHFMLAC 326

Query: 106 -------------KE-----------KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
                        KE            G  P  + ++ V+ CL     + +  ++   + 
Sbjct: 327 DTVLYCLANNSMAKEMVVFLRRVLGRGGYFPGNSVFNVVMACLVKGAELRETCDVFEILR 386

Query: 142 RNGVCPSAETYNCFFK-----EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
           + GV      Y    +     E+R   D     ++Y Q+  DGL + N+ SYN++I  F 
Sbjct: 387 KQGVKAGIGAYLALIEVLYKNEWREEGD-----RVYGQLISDGL-ISNVFSYNMIINCFC 440

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
               MD   E + D++  G+ P+L ++  LI+G C+     +A +    ++E GL P   
Sbjct: 441 RAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIF 500

Query: 257 TFETLYRGLIQ 267
           TF ++  GL Q
Sbjct: 501 TFSSIVDGLCQ 511



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 128/337 (37%), Gaps = 73/337 (21%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI    K N ID+A     +M       +  TYN L++GVC+             +
Sbjct: 181 LYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVG----------VV 230

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++  +M+ +G  P+V ++++++  +  A +   +      MK+ G+ P  AT  ++
Sbjct: 231 DEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPNEATVRAL 290

Query: 121 VKCLCSCGRIEDAEELLGEMV--------------------------------------- 141
           V  +  C     A ELL E +                                       
Sbjct: 291 VHGVFRCVDPSKALELLSEFLDREQEQERVHFMLACDTVLYCLANNSMAKEMVVFLRRVL 350

Query: 142 -RNGVCPSAETYN----CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
            R G  P    +N    C  K    R+  +    L +Q  + G            IG ++
Sbjct: 351 GRGGYFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKAG------------IGAYL 398

Query: 197 ALNRMDMVRE-------IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
           AL  +    E       ++  +   GL  ++ SY M+I+  C  +    A + F +M  +
Sbjct: 399 ALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVR 458

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           G++P  VTF TL  G  +   +   R+L + L E  +
Sbjct: 459 GVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGL 495



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 2/142 (1%)

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+ P+   YN            + A   ++QM  D  CV +  +YN LI     +  +D 
Sbjct: 174 GLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADN-CVADRFTYNTLIHGVCKVGVVDE 232

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
              +   +K  G  P++ +YTMLI G C   +  EA   F  M + G+ P + T   L  
Sbjct: 233 ALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPNEATVRALVH 292

Query: 264 GLIQS-DMLRTWRRLKKKLDEE 284
           G+ +  D  +    L + LD E
Sbjct: 293 GVFRCVDPSKALELLSEFLDRE 314



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 48/188 (25%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI   C I  +  + + L  M + G+ P+  +YN L+   CR             +
Sbjct: 536 IYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRM----------NKV 585

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+K+FD M   G+ PD                        N+           TYS+ 
Sbjct: 586 EKAKKLFDSMSRSGLNPD------------------------NY-----------TYSAF 610

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++ L   GR+E+A+++   M  NG  P +   N   K    ++    A  +  + ++ G+
Sbjct: 611 IEALSESGRLEEAKKMFYSMEANGCSPDSYICNLIIKILVQQEYVEEAQNIIERCRQKGI 670

Query: 181 ---CVPNM 185
               +PN+
Sbjct: 671 SLNSIPNL 678



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 60/134 (44%), Gaps = 2/134 (1%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           +  VF ++   G+ P    ++ ++    +++   L+  K   M          TY++++ 
Sbjct: 163 SAHVFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIH 222

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            +C  G +++A  L+ +M   G  P+  TY    + +      + A  ++  MK+ G+  
Sbjct: 223 GVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGV-Y 281

Query: 183 PNMHSYNILI-GMF 195
           PN  +   L+ G+F
Sbjct: 282 PNEATVRALVHGVF 295


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 140/277 (50%), Gaps = 11/277 (3%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           CK +    A + L EM ++G  P++VTYNV++NG+C+   +  +  F K + +       
Sbjct: 3   CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPS------- 55

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
               G EP+  S++IVL     A + + + + +  M +KG  P V T++ ++  LC  G 
Sbjct: 56  ---YGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGL 112

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           +E A E+L ++ + G  P++ +YN     +  +K  + AM     M   G C P++ SYN
Sbjct: 113 VEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG-CYPDIVSYN 171

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            L+        +D+  E+ + +K  G  P L SY  +I GL +  K KEA +   EM+ K
Sbjct: 172 TLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSK 231

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           GL P  +T+ T+  GL + D +    R   K+ +  I
Sbjct: 232 GLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGI 268



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 133/264 (50%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++ G C+  R+D A  FL  +   G EPN V+YN++L G+C       +ER+E    
Sbjct: 30  YNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCT------AERWE---- 79

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE++  EM  +G  P+V +F++++    R    + +L+ L  + + G  P   +Y+ ++
Sbjct: 80  DAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLL 139

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   +++ A   L  MV  G  P   +YN          + + A++L  Q+K+ G C
Sbjct: 140 HAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKG-C 198

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + SYN +I       +     E+ N++   GL PD+ +Y+ +  GLC + + ++A +
Sbjct: 199 APVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIR 258

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F ++ + G+ P  V +  +  GL
Sbjct: 259 AFGKVQDMGIRPNTVLYNAIILGL 282



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 133/276 (48%), Gaps = 26/276 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  ++ G C   R + AE  +GEM ++G  PNVVT+N+L++ +CR+  + P+        
Sbjct: 65  YNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIP 124

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +K +  A    D M  RG  PD+ S++ +L    R+ +  
Sbjct: 125 KYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 184

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           ++++ L+ +K+KG  P + +Y++V+  L   G+ ++A ELL EMV  G+ P   TY+   
Sbjct: 185 VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIA 244

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      A++ + ++++ G+  PN   YN +I             +++  + G+G 
Sbjct: 245 AGLCREDRIEDAIRAFGKVQDMGI-RPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGC 303

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
            P+  +YT+LI GL  +   KEA     E+  +G++
Sbjct: 304 MPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVV 339



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 10/75 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I G CK      A      MI  G  PN  TY +L+ G+           +E  I
Sbjct: 274 LYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGL----------AYEGLI 323

Query: 61  RNAEKVFDEMRVRGI 75
           + A  + DE+  RG+
Sbjct: 324 KEARDLLDELCSRGV 338


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 138/267 (51%), Gaps = 15/267 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G CK   +D A   L EM + G++PN+ TYN ++NG+C+  +          I 
Sbjct: 459 YTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN----------IE 508

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+  E    G+  D  +++ ++  Y ++ +   + + L  M  KG+ PT+ T++ ++
Sbjct: 509 EAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLM 568

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +ED E+LL  M+  G+ P+A T+N   K+Y  R +   A  +Y+ M   G+ 
Sbjct: 569 NGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVG 628

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y  L+        M     ++ ++KG G    + +Y++LI G  +++K+ EA +
Sbjct: 629 -PDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEARE 687

Query: 242 YFVEMIEKGLLPQKVTF----ETLYRG 264
            F +M  +GL   K  F    +T Y+G
Sbjct: 688 VFDQMRREGLAADKEIFDFFSDTKYKG 714



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 134/263 (50%), Gaps = 11/263 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+LI G+CK   I  A +F  EM  R + P+V+TY  +++G C+   +          
Sbjct: 353 VYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM---------- 402

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+F EM  +G+EPD  +F+ +++ Y +A   + +    N M + G  P V TY+++
Sbjct: 403 VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 462

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G ++ A ELL EM + G+ P+  TYN          +   A+KL  + +  GL
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 522

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
               + +Y  L+  +     MD  +EI  ++ G GL P + ++ +L++G C     ++  
Sbjct: 523 NADTV-TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 581

Query: 241 QYFVEMIEKGLLPQKVTFETLYR 263
           +    M+ KG+ P   TF +L +
Sbjct: 582 KLLNWMLAKGIAPNATTFNSLVK 604



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 138/294 (46%), Gaps = 11/294 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI G+CK   +  A R    MI+ G  PNVVTY  L++G+C+   L           
Sbjct: 424 FTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLD---------- 473

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  EM   G++P++ +++ +++   ++   + ++  +   +  G+     TY++++
Sbjct: 474 SANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM 533

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G ++ A+E+L EM+  G+ P+  T+N     +          KL   M   G+ 
Sbjct: 534 DAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGI- 592

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  ++N L+  +   N +     I+ D+   G+GPD  +Y  L+ G C+ +  KEA  
Sbjct: 593 APNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWF 652

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
            F EM  KG      T+  L +G ++       R +  ++  E +    E  ++
Sbjct: 653 LFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDF 706



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 121/254 (47%), Gaps = 11/254 (4%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           E  E GV  NV +YN++++ VC+             I+ A  +   M ++G  PDV S+S
Sbjct: 236 EFPEVGVCWNVASYNIVIHFVCQLGR----------IKEAHHLLLLMELKGYTPDVISYS 285

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            V++ Y R  +       +  MK KG+ P    Y S++  LC   ++ +AEE   EM+R 
Sbjct: 286 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 345

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+ P    Y      +  R D   A K + +M    +  P++ +Y  +I  F  +  M  
Sbjct: 346 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDI-TPDVLTYTAIISGFCQIGDMVE 404

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             ++++++   GL PD  ++T LI+G C+    K+A +    MI+ G  P  VT+ TL  
Sbjct: 405 AGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLID 464

Query: 264 GLIQSDMLRTWRRL 277
           GL +   L +   L
Sbjct: 465 GLCKEGDLDSANEL 478



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 129/292 (44%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           Y  +I+  C++ RI  A   L  M  +G  P+V++Y+ ++NG CR               
Sbjct: 249 YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMK 308

Query: 47  RASLHPSERFEKTI----------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           R  L P+     +I            AE+ F EM  +GI PD   ++ ++  + +    +
Sbjct: 309 RKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIR 368

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      M  + I P V TY++++   C  G + +A +L  EM   G+ P + T+    
Sbjct: 369 AASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELI 428

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y        A +++  M + G C PN+ +Y  LI        +D   E+ +++   GL
Sbjct: 429 NGYCKAGHMKDAFRVHNHMIQAG-CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 487

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            P++ +Y  +++GLC+    +EA +   E    GL    VT+ TL     +S
Sbjct: 488 QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 539



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 7/242 (2%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR-AHQPQLSLDKLNFMKEKGICPTVATYS 118
           +R A +VF++M   G+   V S ++ L   S+  ++   ++       E G+C  VA+Y+
Sbjct: 191 LREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYN 250

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            V+  +C  GRI++A  LL  M   G  P   +Y+     Y    + +   KL   MK  
Sbjct: 251 IVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRK 310

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           GL  PN + Y  +IG+   + ++    E ++++   G+ PD   YT LI G C++   + 
Sbjct: 311 GL-KPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRA 369

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQ-SDMLRTWRRLK----KKLDEESITFGSEFQ 293
           A ++F EM  + + P  +T+  +  G  Q  DM+   +       K L+ +S+TF     
Sbjct: 370 ASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELIN 429

Query: 294 NY 295
            Y
Sbjct: 430 GY 431



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 10/102 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G CK   +  A     EM  +G   +V TY+VL+ G  +R          K   
Sbjct: 634 YENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKR----------KKFL 683

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN 103
            A +VFD+MR  G+  D   F        +  +P   +D ++
Sbjct: 684 EAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPID 725


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 132/264 (50%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I+G+ K   +  A     +M++ G+ PNVVT N +++G+C+  ++           
Sbjct: 255 YTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMD---------- 304

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE V  +M    I P+ T+++ ++H Y  + Q   ++  L  M   G  P V TYS ++
Sbjct: 305 KAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLI 364

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLC  G   +A E+   M+++G  P+A TY      Y    +      +   M ++G+ 
Sbjct: 365 DCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGM- 423

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P  H +NI I  +    R+D     +N ++  G  PD+ +YT +I GLC+  +  +A  
Sbjct: 424 RPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMS 483

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F +MI+ GL P  +TF TL  G 
Sbjct: 484 RFCQMIDDGLSPDIITFNTLIHGF 507



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 139/292 (47%), Gaps = 28/292 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER--FEKT 59
           Y SLI+G+    +   A R L EM   G  PNVVTY++L++ +C+ + LH   R  F   
Sbjct: 325 YNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCK-SGLHAEAREIFNSM 383

Query: 60  IRNAEK------------------------VFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           I++ +K                        V D M   G+ P    F+I ++ Y +  + 
Sbjct: 384 IQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRL 443

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +    N M+++G  P +  Y++V+  LC  GR++DA     +M+ +G+ P   T+N  
Sbjct: 444 DEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTL 503

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +        A +L+ +M + G+  PN++++N +I       ++   R++++ +  +G
Sbjct: 504 IHGFALHGKWEKAEELFYEMMDRGI-PPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAG 562

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
             P++ SY  +IHG     +  E  +   +M+  GL P  VTF TL  G++ 
Sbjct: 563 AKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVS 614



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 118/260 (45%), Gaps = 27/260 (10%)

Query: 6   IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEK 65
           IY +CK  R+D A     +M ++G  P++V Y  +++G+C+   L           +A  
Sbjct: 434 IYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLD----------DAMS 483

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
            F +M   G+ PD+ +F+ ++H ++   + + + +    M ++GI P V T++S++  L 
Sbjct: 484 RFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLF 543

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
             G++ +A +L   M R G  P+  +YN     Y    +    MKL   M   GL  P  
Sbjct: 544 KEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGL-KPTA 602

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
            ++N L+   +++                GL PD+ +   LI   CE  + ++    F E
Sbjct: 603 VTFNTLLDGMVSM----------------GLKPDVVTCKTLIDSCCEDGRIEDILTLFRE 646

Query: 246 MIEKGLLPQKVTFETLYRGL 265
           M+ K      +T     RG+
Sbjct: 647 MLGKADKTDTITENIKLRGV 666



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 127/298 (42%), Gaps = 12/298 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI   C    +++    LG++I+ G+    VT+  LL  +C           ++T     
Sbjct: 150 LISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLLRTLCAE---------KRTSDAMN 200

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG--ICPTVATYSSVVK 122
            V   M   G  PDV S++ +L       + + + + ++ M E G    P V +Y++V+ 
Sbjct: 201 IVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIH 260

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
                G +  A  L  +M+ +G+ P+  T N         +  + A  + +QM ++ + +
Sbjct: 261 GFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHI-M 319

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN  +YN LI  +++  +      I  ++   G  P++ +Y+MLI  LC+     EA + 
Sbjct: 320 PNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREI 379

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
           F  MI+ G  P   T+ +L  G      L     +K  + +  +  G    N     Y
Sbjct: 380 FNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAY 437



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 114/252 (45%), Gaps = 19/252 (7%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA-------HQPQLSLDKLNFMKEKG---IC 111
           +A  +FDE+  R     + + + +L   +RA         P L++   N M   G   + 
Sbjct: 82  DALDLFDELLQRARPGSIYALNQLLTTVARAPVSSSVRDGPALAVSMFNRMARAGAKKVA 141

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P +AT+  ++ C C  G +      LG++++ G+   A T+    +     K  + AM +
Sbjct: 142 PDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLLRTLCAEKRTSDAMNI 201

Query: 172 -YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK--GSGLGPDLDSYTMLIH 228
             R+M E G C P++ SY  L+    A  + +   E+ + +   G    P++ SYT +IH
Sbjct: 202 VLRRMPELG-CTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIH 260

Query: 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI-- 286
           G  ++    +A   F +M++ G+ P  VT  ++  GL +   +     + +++ +E I  
Sbjct: 261 GFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMP 320

Query: 287 ---TFGSEFQNY 295
              T+ S    Y
Sbjct: 321 NCTTYNSLIHGY 332


>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
          Length = 540

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 144/281 (51%), Gaps = 11/281 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GW     + M +    EM++ G++P+VV Y +L++  C+      S + ++ I 
Sbjct: 262 YTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCK------SGKCDEAI- 314

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              KVF EM   G  P    + ++++      +   +L      KE G    V T ++V+
Sbjct: 315 ---KVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVI 371

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C       A +++ EM ++G+ P+  TY+         +    A  L+++M+ DG C
Sbjct: 372 GAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDG-C 430

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P +++Y +++GMF +  R+DM  ++W  +K  G+ P +  ++ LI+GLC + + +EAC 
Sbjct: 431 EPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFENRLEEACV 490

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           YF EM++KG+ P    F  L   L++   +   + + ++L+
Sbjct: 491 YFQEMLDKGIRPPGQLFSNLKEALVEGGRITLAQEVTQRLE 531



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 138/287 (48%), Gaps = 22/287 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  ++  + +  ++  A     +M   G++ ++  YN L++ + +           K ++
Sbjct: 191 FKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSK----------SKQVK 240

Query: 62  NAEKVFDEMRVRG-IEPDVTSFSIVLHVYSRAHQPQLSLDKLNF--MKEKGICPTVATYS 118
            A  +F EM+ +G   PD+ ++++++  +   H+  L + K  +  M + GI P V  Y 
Sbjct: 241 KAHAIFKEMKRKGRFIPDLKTYTVLMEGW--GHEKDLLMLKAVYQEMLDAGIKPDVVAYG 298

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++   C  G+ ++A ++  EM  +G  PS   Y          +  + A+K ++  KE 
Sbjct: 299 MLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKES 358

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G  +  + + N +IG +          ++ ++++ SG+GP+  +Y ++++ L + +K +E
Sbjct: 359 GFPM-EVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEE 417

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSD-----MLRTWRRLKKK 280
           A   F  M   G  P+  T+ T+  G+  S+      L+ W+++K+K
Sbjct: 418 AYNLFQRMERDGCEPELNTY-TMMVGMFCSNERVDMALKVWKQMKEK 463



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 111/228 (48%), Gaps = 2/228 (0%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG-ICPTVAT 116
           + ++ A + F++M   G++ D++ ++ ++ + S++ Q + +      MK KG   P + T
Sbjct: 202 RKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKT 261

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+ +++       +   + +  EM+  G+ P    Y      +      + A+K++ +M+
Sbjct: 262 YTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEME 321

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           E G C+P+ H Y +LI    ++ R+D   + +   K SG   ++ +   +I   C   ++
Sbjct: 322 ESG-CMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEF 380

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
             A +   EM + G+ P   T++ +   LI+S+ +     L ++++ +
Sbjct: 381 HHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERD 428



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 88/195 (45%), Gaps = 1/195 (0%)

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
           R +G       F  ++    +  Q +L    +  M+ +  C +  T+  +V+      ++
Sbjct: 146 RQQGFRYSAEGFHNLIEALGKIKQFRLVWSLVEAMRCRS-CLSKDTFKIIVRRYARARKV 204

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           ++A E   +M   G+      YN         K    A  ++++MK  G  +P++ +Y +
Sbjct: 205 KEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTV 264

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           L+  +     + M++ ++ ++  +G+ PD+ +Y MLI   C+  K  EA + F EM E G
Sbjct: 265 LMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESG 324

Query: 251 LLPQKVTFETLYRGL 265
            +P    +  L  GL
Sbjct: 325 CMPSPHVYCMLINGL 339


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 137/287 (47%), Gaps = 21/287 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA----------SLH 51
           Y  L+   CK NR+D A + L EM  +G +P+ V+Y  L++ +C+            S  
Sbjct: 184 YNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFT 243

Query: 52  PSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK 101
           PS             E T   A ++ DEM  +GI+P+V S++ +++  S A   +LSL  
Sbjct: 244 PSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAV 303

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
           L  M  +G  P + T++S++K     G   +A +    M+R GV P+   YN        
Sbjct: 304 LAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCS 363

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
           ++    A+ ++ QM+ +G C PN+ +Y+ LI  +     +D   E+WN +   G  P++ 
Sbjct: 364 KRSLGDAVSVFNQMEING-CCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVV 422

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           +YT ++  LC    + +A      M  +   P  VTF T  +GL  S
Sbjct: 423 AYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGS 469



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 120/256 (46%), Gaps = 11/256 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSLI G+        A  F   MI  GV PNVV YN L++G+C + SL           
Sbjct: 319 FTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSL----------G 368

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  VF++M + G  P+V ++S ++  Y++A     + +  N+M   G  P V  Y+ +V
Sbjct: 369 DAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMV 428

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC       A  L+  M      P+  T+N F K   G    + A+K++ QM   G C
Sbjct: 429 DVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSG-C 487

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +YN L+   +   R      +  D++  G+  +L +Y  +I+G C      EA +
Sbjct: 488 FPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALE 547

Query: 242 YFVEMIEKGLLPQKVT 257
              +M+ +G  P  +T
Sbjct: 548 LLGKMVVRGTKPDAIT 563



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 125/267 (46%), Gaps = 11/267 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G CK    + A + L EM+ +G++PNV++Y  ++N +    ++  S       
Sbjct: 248 VYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELS------- 300

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                V  +M  RG  P++ +F+ ++  +        +LD  + M  +G+ P V  Y+++
Sbjct: 301 ---LAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNAL 357

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LCS   + DA  +  +M  NG CP+  TY+     Y    D +GA +++  M   G 
Sbjct: 358 MHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHG- 416

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN+ +Y  ++ +    +  +    +  +++     P+  ++   I GLC   +   A 
Sbjct: 417 CHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAI 476

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           + F +M   G  P   T+  L   L++
Sbjct: 477 KVFDQMGNSGCFPNTTTYNELLDSLLK 503



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 6/209 (2%)

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           E+ +   + +  +M++ GI      F  V+  Y RA   + +L     M++  + PTV  
Sbjct: 89  EREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKI 148

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+ ++  L    R +    +   M ++G+ P+  TYN   K        +GA KL  +M 
Sbjct: 149 YNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMS 208

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G C P+  SY  LI     L ++   RE+          P +  Y  LI+G+C++  +
Sbjct: 209 SKG-CDPDEVSYTTLISSLCKLGKVKEAREL-----AMSFTPSVPVYNALINGVCKEYTF 262

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +EA Q   EM+ KG+ P  +++ T+   L
Sbjct: 263 EEAFQLLDEMMNKGIDPNVISYTTIINAL 291



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 2/194 (1%)

Query: 85  VLHVYSRAHQPQLSLDKL-NFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
           VL      H   L+L+   +    K    T  TY  +++ L S   ++  + LL +M   
Sbjct: 46  VLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLE 105

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+  S + +      YR    +  A+K + +M +D    P +  YN ++   +  NR  M
Sbjct: 106 GISCSEDLFISVIGSYRRAGSSEQALKTFYRM-QDFRVKPTVKIYNHILDALLDENRFQM 164

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
           +  I++++K  G+ P++ +Y +L+  LC+  +   A +  VEM  KG  P +V++ TL  
Sbjct: 165 INPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLIS 224

Query: 264 GLIQSDMLRTWRRL 277
            L +   ++  R L
Sbjct: 225 SLCKLGKVKEAREL 238



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 10/179 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+    K  R   A   + +M  RG+E N+VTYN ++ G C    L           
Sbjct: 494 YNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGML----------G 543

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++  +M VRG +PD  + +IV+  Y +  +  +++  ++ +      P +  Y+S++
Sbjct: 544 EALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLI 603

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             +C+   +E+A   L  M+  G+ P+  T+N   +        +GA++    +   G 
Sbjct: 604 SGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQFLDAVLGSGF 662


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 143/284 (50%), Gaps = 14/284 (4%)

Query: 2   YTSLIYGWCKINRIDM---AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK 58
           Y +LI G+CK+ RI     A+  L EM+ +G+ PN VTYN+L++G C+          ++
Sbjct: 193 YNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCK----------DE 242

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            +  A +VF EM+ +G+ P+V +++I+++      +   ++   + M    + P V T++
Sbjct: 243 NVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHN 302

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++   C    + +A  L  +M + GV P+A TY      Y        A  LY  M + 
Sbjct: 303 VLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDR 362

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P + +YN LI        +   R + N++    L  D+ +Y +LI  LC+K + ++
Sbjct: 363 GI-FPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRK 421

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           A +   EM EKGL P  VT+ TL  G  +   LR    ++ +++
Sbjct: 422 AVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRME 465



 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 135/260 (51%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G C   ++D A     +M+   +EPNVVT+NVL+NG C+           KT+ 
Sbjct: 266 YNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCK----------NKTVN 315

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F++M  +G++P+  +++ ++  Y +  + + +    N M ++GI P V+TY+ ++
Sbjct: 316 EAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLI 375

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G ++ A  L+ EMV   +     TYN        + ++  A+KL  +M E GL 
Sbjct: 376 AGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLN 435

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN L+  +     +     +   ++  G   ++ ++ +LI G C K + ++A  
Sbjct: 436 -PSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANG 494

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              EM+E+GL+P + T+E +
Sbjct: 495 LLNEMLERGLVPNRTTYEII 514



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 147/299 (49%), Gaps = 13/299 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  ++ G CK+ +++ A   + +M   GV PNV+TYN L++G C+   +         + 
Sbjct: 158 FNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGK-------MY 210

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +  EM  +GI P+  +++I++  + +      ++     M+ +G+ P V TY+ ++
Sbjct: 211 KADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILI 270

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LCS G++++A  L  +MV + + P+  T+N     +   K  N A+ L+  M++ G+ 
Sbjct: 271 NGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVD 330

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +Y  LI  +    RM+    ++N +   G+ P++ +Y  LI GLC K   K A  
Sbjct: 331 -PNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARS 389

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
              EM+ K L    VT+  L   L +    R   +L     +K L+   +T+ +    Y
Sbjct: 390 LMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGY 448



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 124/264 (46%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CK   +  A R  GEM  +G+ PNVVTYN+L+NG+C           +  + 
Sbjct: 231 YNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCS----------DGKVD 280

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D+M    +EP+V + +++++ + +      +++  N M+++G+ P   TY++++
Sbjct: 281 EAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLI 340

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR+EDA  L   M+  G+ P   TYNC       + D   A  L  +M    L 
Sbjct: 341 DAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLS 400

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++ +YNILI             ++ +++   GL P   +Y  L+ G C +   + A  
Sbjct: 401 -ADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALI 459

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
               M  KG     VT   L +G 
Sbjct: 460 VRTRMERKGKQANVVTHNVLIKGF 483



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 137/273 (50%), Gaps = 19/273 (6%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           EMI+R +E NV+++N+++NG+C+   L+           A  V ++M+V G+ P+V +++
Sbjct: 145 EMIKRKIELNVISFNIVVNGLCKVGKLN----------RAGDVIEDMKVWGVSPNVITYN 194

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKE---KGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
            ++  Y +  +          +KE   KGICP   TY+ ++   C    +  A  + GEM
Sbjct: 195 TLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEM 254

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
            R G+ P+  TYN            + A+ L  QM    L  PN+ ++N+LI  F     
Sbjct: 255 QRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDL-EPNVVTHNVLINGFCKNKT 313

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           ++    ++ND++  G+ P+  +YT LI   C+  + ++A   +  MI++G+ P+  T+  
Sbjct: 314 VNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNC 373

Query: 261 LYRGLIQSDMLRTWRRL-----KKKLDEESITF 288
           L  GL +   ++  R L      KKL  + +T+
Sbjct: 374 LIAGLCRKGDVKAARSLMNEMVSKKLSADVVTY 406



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 129/236 (54%), Gaps = 14/236 (5%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G + ++++ N LL+G+ +          E    + E V+ EM  R IE +V SF+IV++ 
Sbjct: 115 GFKLSLISCNPLLSGLVK----------ESENGDMEFVYREMIKRKIELNVISFNIVVNG 164

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIE---DAEELLGEMVRNGV 145
             +  +   + D +  MK  G+ P V TY++++   C  GRI     A+ +L EMV  G+
Sbjct: 165 LCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGI 224

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
           CP+  TYN     +   ++ +GAM+++ +M+  GL  PN+ +YNILI    +  ++D   
Sbjct: 225 CPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGL-RPNVVTYNILINGLCSDGKVDEAV 283

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            + + +  S L P++ ++ +LI+G C+ +   EA   F +M ++G+ P  +T+ TL
Sbjct: 284 ALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTL 339



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI   CK      A + L EM E+G+ P+ VTYN L++G CR          E  +R
Sbjct: 406 YNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCR----------EGNLR 455

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V   M  +G + +V + ++++  +    + + +   LN M E+G+ P   TY  + 
Sbjct: 456 AALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIK 515

Query: 122 KCLCSCGRIEDAE 134
           + +   G + D E
Sbjct: 516 EEMMEKGFVPDIE 528


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 145/288 (50%), Gaps = 17/288 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G C  +R   A R L +MI++ + PNV+TY+ LL+   +             + 
Sbjct: 228 YTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK----------VL 277

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLH---VYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A+++F+EM    I+PD+ ++S +++   ++ R  +     D    M  KG    V +Y+
Sbjct: 278 EAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFD---LMVSKGCLADVVSYN 334

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++   C   R+ED  +L  EM + G+  +  TYN   + +    D + A + + QM   
Sbjct: 335 TLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFF 394

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P++ +YNIL+G       ++    I+ D++   +  D+ +YT +I G+C+  K +E
Sbjct: 395 GIS-PDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEE 453

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           A   F  +  KGL P  VT+ T+  GL    +L     L  K+ +E +
Sbjct: 454 AWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL 501



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 138/267 (51%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I   CK  R++ A  F  E+  +G+ PNVVTY  L+NG+C       S R+     
Sbjct: 193 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCN------SSRWS---- 242

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  +M  + I P+V ++S +L  + +  +   + +    M    I P + TYSS+V
Sbjct: 243 DAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLV 302

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   RI++A ++   MV  G      +YN     +   K     MKL+R+M + GL 
Sbjct: 303 NGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGL- 361

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V N  +YN LI  F     +D  +E ++ +   G+ PD+ +Y +L+ GLC+  + ++A  
Sbjct: 362 VSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALV 421

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F +M ++ +    VT+ T+ RG+ ++
Sbjct: 422 IFEDMQKREMDLDIVTYTTVIRGMCKT 448



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 138/267 (51%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +I  +C   ++ +A   LG+M++ G EP+ VT   L+NG CRR            + 
Sbjct: 123 FNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRR----------NRVS 172

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  + D+M   G +PD+ +++ ++    +  +   + D    ++ KGI P V TY+++V
Sbjct: 173 DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALV 232

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+  R  DA  LL +M++  + P+  TY+     +        A +L+ +M    + 
Sbjct: 233 NGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSI- 291

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ L+      +R+D   ++++ +   G   D+ SY  LI+G C+ ++ ++  +
Sbjct: 292 DPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMK 351

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F EM ++GL+   VT+ TL +G  Q+
Sbjct: 352 LFREMSQRGLVSNTVTYNTLIQGFFQA 378



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 142/322 (44%), Gaps = 51/322 (15%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           +++ A     +M++    P++V +N LL+ + +       ++++  I   +K    M V 
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKL------KKYDVVISLGKK----MEVL 114

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           GI  D+ +F+IV++ +    Q  L+L  L  M + G  P   T  S+V   C   R+ DA
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             L+ +MV  G  P    YN         K  N A   +++++  G+  PN+ +Y  L+ 
Sbjct: 175 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGI-RPNVVTYTALVN 233

Query: 194 MFMALNR--------MDMV---------------------------REIWNDVKGSGLGP 218
                +R         DM+                           +E++ ++    + P
Sbjct: 234 GLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDP 293

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTW 274
           D+ +Y+ L++GLC   +  EA Q F  M+ KG L   V++ TL  G  ++    D ++ +
Sbjct: 294 DIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLF 353

Query: 275 RRLKKK-LDEESITFGSEFQNY 295
           R + ++ L   ++T+ +  Q +
Sbjct: 354 REMSQRGLVSNTVTYNTLIQGF 375



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 134/293 (45%), Gaps = 21/293 (7%)

Query: 18  AERFLG-EMIERGVEPNVVTYNVLLNGVCR---RASLHPS-----ERFEKT------IRN 62
           A+RFL   ++E G      + +      CR   RAS   S     ER  KT      + +
Sbjct: 9   AKRFLHRNLLENGKPRTASSPSFSHCSSCRCWVRASSSVSGGDLRERLSKTRLRDIKLND 68

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  +F +M      P +  F+ +L    +  +  + +     M+  GI   + T++ V+ 
Sbjct: 69  AIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVIN 128

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
           C C C ++  A  +LG+M++ G  P   T       +  R   + A+ L  +M E G   
Sbjct: 129 CFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGY-K 187

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ +YN +I       R++   + + +++  G+ P++ +YT L++GLC   +W +A + 
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 247

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGS 290
             +MI+K + P  +T+  L    +++  +   + L     +  +D + +T+ S
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSS 300


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 144/285 (50%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G C   R + A R L +MI+R + PNV+TY+ LL+   +             + 
Sbjct: 228 YTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGK----------VL 277

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++F+EM    I+PD+ ++S +++      +   +    + M  KG  P V +Y++++
Sbjct: 278 EAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLI 337

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R+ED  +L  +M + G+  +  TYN   + +    D + A + + QM   G+ 
Sbjct: 338 NGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVS 397

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YNIL+G       ++    I+ D++ S +  D+ +YT +I G+C+  K ++A  
Sbjct: 398 -PDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWG 456

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F  +  KGL P  VT+ T+  GL    +      L  K+ +E +
Sbjct: 457 LFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEGL 501



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 136/267 (50%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I   CK  R++ A  F  E+  +G+ PNVVTY  L+NG+C     +          
Sbjct: 193 YNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWN---------- 242

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  +M  R I P+V ++S +L  + +  +   + +    M    I P + TYSS++
Sbjct: 243 DAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLI 302

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   RI++A ++   MV  G  P   +YN     +   K     MKL+R+M + GL 
Sbjct: 303 NGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGL- 361

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V N  +YN LI  F  +  +D  +E ++ +   G+ PD+ +Y +L+ GLC+    ++A  
Sbjct: 362 VNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALV 421

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F +M +  +    VT+ T+ +G+ ++
Sbjct: 422 IFEDMQKSEMDLDIVTYTTVIQGMCKT 448



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 138/266 (51%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +I  +C   ++ +A   LG+M++ G EP+ VT   L+NG CRR            + 
Sbjct: 123 FNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRR----------NRVS 172

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  + D+M   G  PD+ +++ ++    +  +   +LD    +  KGI P V TY+++V
Sbjct: 173 DAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALV 232

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+ GR  DA  LL +M++  + P+  TY+     +        A +++ +M    + 
Sbjct: 233 NGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSI- 291

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ LI      +R+D   ++++ +   G  PD+ SY  LI+G C+ ++ ++  +
Sbjct: 292 DPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMK 351

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
            F +M ++GL+   VT+ TL +G  Q
Sbjct: 352 LFRKMSQRGLVNNTVTYNTLIQGFFQ 377



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 133/293 (45%), Gaps = 21/293 (7%)

Query: 18  AERFLG-EMIERGVEPNVVTYNVLLNGVCR---RASLHPS-----ERFEKT------IRN 62
           A+RFL   ++E G      + +      CR   RAS   S     ER  KT      + +
Sbjct: 9   AKRFLHRNLLENGKPRTASSPSFSHCSSCRCSARASSSVSGGDLRERLSKTRLRDIKLHD 68

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  +F EM      P +  F+ +L    +  +  + +     M+  GI   + T++ V+ 
Sbjct: 69  AINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVIN 128

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
           C C C ++  A  +LG+M++ G  P   T       +  R   + A+ L  +M E G   
Sbjct: 129 CFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGY-R 187

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ +YN +I       R++   + + ++   G+ P++ +YT L++GLC   +W +A + 
Sbjct: 188 PDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARL 247

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGS 290
             +MI++ + P  +T+  L    +++  +   + +     +  +D + +T+ S
Sbjct: 248 LRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSS 300


>gi|15239018|ref|NP_196692.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174149|sp|Q9LFM6.1|PP375_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g11310, mitochondrial; Flags: Precursor
 gi|8953393|emb|CAB96666.1| putative protein [Arabidopsis thaliana]
 gi|110738090|dbj|BAF00978.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004275|gb|AED91658.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 144/279 (51%), Gaps = 15/279 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++  L+ GW +  ++  AE+   EM    V+P VVTY  L+ G CR           + +
Sbjct: 252 IFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRM----------RRV 301

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN--FMKEKGICPTVATYS 118
           + A +V +EM++  +E +   F+ ++     A +   +L  +   F+ E G  PT+ TY+
Sbjct: 302 QIAMEVLEEMKMAEMEINFMVFNPIIDGLGEAGRLSEALGMMERFFVCESG--PTIVTYN 359

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           S+VK  C  G +  A ++L  M+  GV P+  TYN FFK +         M LY ++ E 
Sbjct: 360 SLVKNFCKAGDLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEA 419

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G   P+  +Y++++ M     ++ +  ++  ++K  G+ PDL + TMLIH LC  +  +E
Sbjct: 420 GHS-PDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEE 478

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A + F   + +G++PQ +TF+ +  GL    M    +RL
Sbjct: 479 AFEEFDNAVRRGIIPQYITFKMIDNGLRSKGMSDMAKRL 517



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 82/227 (36%), Gaps = 48/227 (21%)

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
           E   DE    GIEP V     +    S +     S+ K   MK  G   + + + SVV  
Sbjct: 89  ESALDET---GIEPSVELVHALFDRLSSSPMLLHSVFKWAEMK-PGFTLSPSLFDSVVNS 144

Query: 124 LCSCGRIEDAEELLGEMVRN---GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE--- 177
           LC     E A  L+ + VR+       SA+T+    + Y        A++ +   +    
Sbjct: 145 LCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSYEP 204

Query: 178 ---------------DGLC-----------------------VPNMHSYNILIGMFMALN 199
                          D LC                       VP++  +NIL+  +    
Sbjct: 205 VCKSATELRLLEVLLDALCKEGHVREASMYLERIGGTMDSNWVPSVRIFNILLNGWFRSR 264

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
           ++    ++W ++K   + P + +Y  LI G C  ++ + A +   EM
Sbjct: 265 KLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEM 311


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 147/293 (50%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+CKI+ +  A   L + + +G  P+ VTY  L+NG+C           E  + 
Sbjct: 296 YNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCA----------EGDVE 345

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F+E + +GI+PD+  ++ ++           +L  +N M E+G  P + TY+ V+
Sbjct: 346 RALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVI 405

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G I DA  ++ + +  G  P   T+N     Y  R   + A++L  +M E G+ 
Sbjct: 406 NGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGI- 464

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN ++       +++ V E + ++   G  P+  +Y +LI   C   K +EA +
Sbjct: 465 APDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASK 524

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
             V+M ++GL P  V+F TL  G  ++  L     L +KL+E+  +  ++  N
Sbjct: 525 VIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFN 577



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 133/293 (45%), Gaps = 46/293 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SL+ G C    I  A + + EM E G  P++ TYN+++NG+C+  +          I
Sbjct: 365 VYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGN----------I 414

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A  V ++  ++G  PDV +F+ ++  Y +  +   +L  +  M E GI P   TY+SV
Sbjct: 415 SDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSV 474

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRK---------------- 163
           +  LC  G++ +  E   EM+  G  P+  TYN   + + R  K                
Sbjct: 475 LNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGL 534

Query: 164 ------------------DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
                             D  GA  L+++++E G       ++N LIG F     M M  
Sbjct: 535 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSA-TADTFNTLIGAFSGKLNMHMAE 593

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
           +I++++   G   D  +Y +LI G C+      A  + VEMI+KG +P   TF
Sbjct: 594 KIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTF 646



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 140/294 (47%), Gaps = 17/294 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +++  CK   +  A   LG++I+RG+  N+ TYN+ + G+C       + R  + +R
Sbjct: 192 FNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCE------AGRLPEAVR 245

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + D MR   + PDV +++ ++    +   PQ ++  L  M  +G  P   TY++++
Sbjct: 246 ----LVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTII 300

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    +++A ELL + V  G  P   TY           D   A++L+ + +  G+ 
Sbjct: 301 DGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGI- 359

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YN L+        +    ++ N++   G  PD+ +Y ++I+GLC+     +A  
Sbjct: 360 KPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATV 419

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE-----ESITFGS 290
              + I KG LP   TF TL  G  +   L +  +L +++ E     ++IT+ S
Sbjct: 420 VMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNS 473



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 128/290 (44%), Gaps = 23/290 (7%)

Query: 16  DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI--------------- 60
           D A +    M+  GV P++ T+ + L   C  A  H + R  + +               
Sbjct: 105 DQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGL 164

Query: 61  ------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV 114
                  +A ++FD+M    + P++ +F+ VLH   +      +   L  + ++G+   +
Sbjct: 165 YAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINL 224

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            TY+  ++ LC  GR+ +A  L+  M R    P   TYN   +    +     AM   R+
Sbjct: 225 FTYNIWIRGLCEAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRR 283

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M   G C+P+  +YN +I  +  ++ +    E+  D    G  PD  +Y  LI+GLC + 
Sbjct: 284 MMNQG-CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEG 342

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
             + A + F E   KG+ P  V + +L +GL    ++    ++  ++ EE
Sbjct: 343 DVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEE 392



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 25/171 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH---------- 51
           Y  LI  +C+ N+++ A + + +M + G+ P+ V++N L+ G CR   L           
Sbjct: 506 YNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLE 565

Query: 52  ------PSERFEKTI---------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                  ++ F   I           AEK+FDEM  +G   D  ++ +++    +     
Sbjct: 566 EKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVD 625

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
            +   L  M +KG  P+++T+  V+  L    R+  A  ++  MV+ GV P
Sbjct: 626 RAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 676


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 141/305 (46%), Gaps = 35/305 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  +I G+C   R   AE+ L EM+ER + P+VVT++ L+N   +      +E       
Sbjct: 291 YNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEML 350

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +  +  AE +F     +G  PD+ +F+ ++  Y RA +  
Sbjct: 351 PRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVD 410

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
             +  L+ M E G+     TY++++   C  G +  A++LL EM+ +GVCP+  T N   
Sbjct: 411 DGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLL 470

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCV----------PNMHSYNILIGMFMALNRMDMVRE 206
                      A+++++ M++  + +          P++ +YNILI   +   +     E
Sbjct: 471 DGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEE 530

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++ ++   G+ PD  +Y+ +I GLC++ +  EA Q F  M  K   P  VTF TL  G  
Sbjct: 531 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYC 590

Query: 267 QSDML 271
           ++ M+
Sbjct: 591 KAGMV 595



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 134/279 (48%), Gaps = 22/279 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I G+CK NR+D AE        +G  P+++T+N L+ G CR           K + 
Sbjct: 361 YSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCR----------AKRVD 410

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  K+  EM   G+  +  +++ ++H + +      + D L  M   G+CP V T ++++
Sbjct: 411 DGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLL 470

Query: 122 KCLCSCGRIEDAEELLGEMVR-----------NGVCPSAETYNCFFKEYRGRKDANGAMK 170
             LC  G+++DA E+   M +           NGV P  +TYN              A +
Sbjct: 471 DGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEE 530

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           LY +M   G+ VP+  +Y+ +I      +R+D   ++++ +      PD+ ++  LI G 
Sbjct: 531 LYEEMPHRGI-VPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGY 589

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           C+     +  + F EM ++G++   +T+ TL  G  + D
Sbjct: 590 CKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVD 628



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 148/315 (46%), Gaps = 32/315 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRAS-------LHPSE 54
           +T+L+ G C+  R+  A   L  M+E G++PN +TY  +++G+C+          L   E
Sbjct: 185 FTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKME 244

Query: 55  RFEKTIRN-------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                I N                   A  +F EM+ + I PD+ +++ +++ +  + + 
Sbjct: 245 EVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRW 304

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +   L  M E+ I P V T+S+++      G+  +AEEL  EM+   + PS  TY+  
Sbjct: 305 SDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSM 364

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +  +   + A  ++      G C P++ ++N LI  +    R+D   ++ +++  +G
Sbjct: 365 IDGFCKQNRLDAAEHMFYLTPTKG-CSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAG 423

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS----DML 271
           L  +  +YT LIHG C+      A     EMI  G+ P  VT  TL  GL  +    D L
Sbjct: 424 LVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDAL 483

Query: 272 RTWRRLKK-KLDEES 285
             ++ ++K K+D ++
Sbjct: 484 EMFKAMQKSKMDIDA 498



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 36/230 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI+G+C++  ++ A+  L EMI  GV PNVVT N LL+G+C    L  +    K ++
Sbjct: 431 YTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQ 490

Query: 62  N------------------------------------AEKVFDEMRVRGIEPDVTSFSIV 85
                                                AE++++EM  RGI PD  ++S +
Sbjct: 491 KSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 550

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           +    +  +   +    + M  K   P V T+++++   C  G ++D  EL  EM + G+
Sbjct: 551 IDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGI 610

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
              A TY      +R   + +GA+ ++++M   G+    +   N+L G++
Sbjct: 611 VADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLW 660



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 139/300 (46%), Gaps = 21/300 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T L+  +C  +++  A    G++ + G  P VVT+N LL+G+C           E  I 
Sbjct: 119 FTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLC----------VEDRIS 168

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F +M     +P+V +F+ +++   R  +   ++  L+ M E G+ P   TY ++V
Sbjct: 169 EALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIV 224

Query: 122 KCLCSCGRIEDAEELLGEMVR-NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             +C  G    A  LL +M   + + P+   YN            + A  L+ +M+E  +
Sbjct: 225 DGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEI 284

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +YN +I  F    R     ++  ++    + PD+ +++ LI+   ++ K+ EA 
Sbjct: 285 -FPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAE 343

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           + + EM+ + ++P  VT+ ++  G  + + L     +      K    + ITF +    Y
Sbjct: 344 ELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGY 403



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 124/285 (43%), Gaps = 29/285 (10%)

Query: 8   GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------SLH--------PS 53
           G+ +I  +D A    G M+     P+V+ +  L+  V R        SLH        P 
Sbjct: 55  GFHEIKGLDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPC 114

Query: 54  ERFEKTIRN-----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKL 102
             +  TI             A   F ++   G  P V +F+ +LH      +   +LD  
Sbjct: 115 NAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLF 174

Query: 103 NFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR 162
           + M +    P V T+++++  LC  GR+ +A  LL  M+ +G+ P+  TY          
Sbjct: 175 HQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKM 230

Query: 163 KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS 222
            D   A+ L R+M+E    +PN+  YN +I       R      ++ +++   + PD+ +
Sbjct: 231 GDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVT 290

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           Y  +I+G C   +W +A Q   EM+E+ + P  VTF  L    ++
Sbjct: 291 YNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVK 335



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 40/228 (17%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           K + +A  +F  M      P V  F  ++ V  R  +P + +     M+   +     ++
Sbjct: 60  KGLDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPCNAYSF 119

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + ++KC CSC ++  A    G++ + G  P+  T+N            + A+ L+ QM  
Sbjct: 120 TILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQM-- 177

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
              C PN+ ++                                   T L++GLC + +  
Sbjct: 178 ---CKPNVVTF-----------------------------------TTLMNGLCREGRVV 199

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           EA      M+E GL P ++T+ T+  G+ +     +   L +K++E S
Sbjct: 200 EAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVS 247


>gi|357117116|ref|XP_003560320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Brachypodium distachyon]
          Length = 598

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 135/272 (49%), Gaps = 13/272 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+YGWC++ ++D A+  L  M   GV P+VV +N LL G         ++RFE    
Sbjct: 194 YTALLYGWCRLGKLDEAKHVLARMKAAGVAPDVVVFNTLLAGFV------AADRFE---- 243

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  EM  R   P+  S++ ++       +    +     M+ KG  P   TY ++V
Sbjct: 244 DAFELAREMERRDCPPNAVSYTTLMQGLGSRGRVDEVMRVFVEMRRKGCAPDSVTYGTLV 303

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR+    E L  M R+ +      Y  FF  +  ++     ++L  +M+E   C
Sbjct: 304 SAFCKAGRLSQGYEFLDAMSRDALRVDPGVYLGFFVAHEKKEQLEECLELMERMRE-CRC 362

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YN+++ +   L        +WN+++ SGL P +D++ ++++GL  +    +AC 
Sbjct: 363 PPDLGIYNVVLRLSCKLGETKQAMALWNEMENSGLSPGVDTFAIMVNGLVGQGSLVDACS 422

Query: 242 YFVEMIEKGLL--PQKVTFETLYRGLIQSDML 271
           +F +M+ +GL   PQ    + L   L++ + L
Sbjct: 423 FFKDMVGRGLFVAPQYGVLKDLLNALVRDEKL 454



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 100/242 (41%), Gaps = 37/242 (15%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +  AE++ +E++ R +   +  ++ +L+ + R  +   +   L  MK  G+ P V  +++
Sbjct: 173 VAAAERLVEELQPR-LPLSIRHYTALLYGWCRLGKLDEAKHVLARMKAAGVAPDVVVFNT 231

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++    +  R EDA EL  EM R    P+A +Y    +    R   +  M+++ +M+  G
Sbjct: 232 LLAGFVAADRFEDAFELAREMERRDCPPNAVSYTTLMQGLGSRGRVDEVMRVFVEMRRKG 291

Query: 180 LCVPNMHSYNILIGMFMALNRMD--------MVREIWNDVKGSGLG-------------- 217
            C P+  +Y  L+  F    R+         M R+      G  LG              
Sbjct: 292 -CAPDSVTYGTLVSAFCKAGRLSQGYEFLDAMSRDALRVDPGVYLGFFVAHEKKEQLEEC 350

Query: 218 -------------PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
                        PDL  Y +++   C+  + K+A   + EM   GL P   TF  +  G
Sbjct: 351 LELMERMRECRCPPDLGIYNVVLRLSCKLGETKQAMALWNEMENSGLSPGVDTFAIMVNG 410

Query: 265 LI 266
           L+
Sbjct: 411 LV 412


>gi|357159762|ref|XP_003578551.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Brachypodium distachyon]
          Length = 534

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 144/280 (51%), Gaps = 14/280 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+L++ WC+   +D AE+   EM + G+ PNV TY  +++ + R             +
Sbjct: 241 LYTTLVHAWCRSGCLDKAEQVFAEMQQAGIMPNVYTYTAVIDAMYRAGQ----------V 290

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++  +M   G  P+  +F+ ++  + +A + +  L   N M++ G  P + TY+ +
Sbjct: 291 PRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFL 350

Query: 121 VKCLCSCGR--IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           ++  C  G+  ++ A +LL +M+  G  P   T+N   K      + + A KLY +M+E 
Sbjct: 351 METHCGKGQSNLDAAMKLLLKMIAKGCTPDCHTFNPMLKLVVVLGNVDAAHKLYERMQEL 410

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
             C PN+ +YN+L+ +F     MDMV  I  D+   G+ P++++Y  LI   C +  WK 
Sbjct: 411 Q-CKPNVITYNLLMKLFGKDKSMDMVLRIKKDMDAQGVEPNVNTYGALIETFCGRGNWKR 469

Query: 239 ACQYFVEMIE-KGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A     EM+E K L P+K  ++ +   L ++  LR    L
Sbjct: 470 AYATLREMLEVKSLKPKKPVYDMVLVLLRKAGQLRKHEEL 509



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 99/258 (38%), Gaps = 38/258 (14%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG------------- 109
           A  + DEMR R I         ++  Y RA     + D    M+E G             
Sbjct: 153 ARHLLDEMRKRSIPISSQVILALIRRYVRAGMSSEASDLFRSMEEYGGGVPDPAVLASLL 212

Query: 110 ----------------------ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
                                   P V  Y+++V   C  G ++ AE++  EM + G+ P
Sbjct: 213 GALSKKRLASEAQALFDSYKSVFTPDVVLYTTLVHAWCRSGCLDKAEQVFAEMQQAGIMP 272

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
           +  TY               A +L  QM + G C PN  ++N ++   +   R + V ++
Sbjct: 273 NVYTYTAVIDAMYRAGQVPRAQELLCQMIDSG-CPPNTATFNAIMRAHVKAGRSEQVLQV 331

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEK--QKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            N ++  G  PD+ +Y  L+   C K       A +  ++MI KG  P   TF  + + +
Sbjct: 332 HNQMRQLGCDPDIITYNFLMETHCGKGQSNLDAAMKLLLKMIAKGCTPDCHTFNPMLKLV 391

Query: 266 IQSDMLRTWRRLKKKLDE 283
           +    +    +L +++ E
Sbjct: 392 VVLGNVDAAHKLYERMQE 409



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 99/241 (41%), Gaps = 36/241 (14%)

Query: 46  RRASLHPSERFEKTIRNAEKVFDEM-----RVRGIEPDVTSFSIVLHVYSRAHQPQLSL- 99
           RRA  HP+     T   A   FD +      + G+ P   S  +  HV+ R     L+L 
Sbjct: 61  RRA--HPA-----TPLPASPPFDPLPSLSTTLTGLLPSTPSPHLTFHVFGRL----LALR 109

Query: 100 ------DKLNFMKEKGICPTVAT------YSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
                 + L F     + P++ T      Y+S++  L        A  LL EM +  +  
Sbjct: 110 RGIPFPEALAFFNH--VLPSLPTDSLPELYASMMDLLAKHHHFPLARHLLDEMRKRSIPI 167

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
           S++      + Y     ++ A  L+R M+E G  VP+      L+G  ++  R+    + 
Sbjct: 168 SSQVILALIRRYVRAGMSSEASDLFRSMEEYGGGVPDPAVLASLLGA-LSKKRLASEAQA 226

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF----ETLYR 263
             D   S   PD+  YT L+H  C      +A Q F EM + G++P   T+    + +YR
Sbjct: 227 LFDSYKSVFTPDVVLYTTLVHAWCRSGCLDKAEQVFAEMQQAGIMPNVYTYTAVIDAMYR 286

Query: 264 G 264
            
Sbjct: 287 A 287


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 138/267 (51%), Gaps = 15/267 (5%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            YT+LI G CK   +D A   L EM + G++PN+ TYN ++NG+C+  +          I 
Sbjct: 902  YTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN----------IE 951

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             A K+  E    G+  D  +++ ++  Y ++ +   + + L  M  KG+ PT+ T++ ++
Sbjct: 952  EAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLM 1011

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               C  G +ED E+LL  M+  G+ P+A T+N   K+Y  R +   A  +Y+ M   G+ 
Sbjct: 1012 NGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVG 1071

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             P+  +Y  L+        M     ++ ++KG G    + +Y++LI G  +++K+ EA +
Sbjct: 1072 -PDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEARE 1130

Query: 242  YFVEMIEKGLLPQKVTF----ETLYRG 264
             F +M  +GL   K  F    +T Y+G
Sbjct: 1131 VFDQMRREGLAADKEIFDFFSDTKYKG 1157



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 134/263 (50%), Gaps = 11/263 (4%)

Query: 1    MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
            +YT+LI G+CK   I  A +F  EM  R + P+V+TY  +++G C+   +          
Sbjct: 796  VYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM---------- 845

Query: 61   RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              A K+F EM  +G+EPD  +F+ +++ Y +A   + +    N M + G  P V TY+++
Sbjct: 846  VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 905

Query: 121  VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
            +  LC  G ++ A ELL EM + G+ P+  TYN          +   A+KL  + +  GL
Sbjct: 906  IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 965

Query: 181  CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
                + +Y  L+  +     MD  +EI  ++ G GL P + ++ +L++G C     ++  
Sbjct: 966  NADTV-TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 1024

Query: 241  QYFVEMIEKGLLPQKVTFETLYR 263
            +    M+ KG+ P   TF +L +
Sbjct: 1025 KLLNWMLAKGIAPNATTFNSLVK 1047



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 138/294 (46%), Gaps = 11/294 (3%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            +T LI G+CK   +  A R    MI+ G  PNVVTY  L++G+C+   L           
Sbjct: 867  FTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLD---------- 916

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            +A ++  EM   G++P++ +++ +++   ++   + ++  +   +  G+     TY++++
Sbjct: 917  SANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM 976

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               C  G ++ A+E+L EM+  G+ P+  T+N     +          KL   M   G+ 
Sbjct: 977  DAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIA 1036

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             PN  ++N L+  +   N +     I+ D+   G+GPD  +Y  L+ G C+ +  KEA  
Sbjct: 1037 -PNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWF 1095

Query: 242  YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
             F EM  KG      T+  L +G ++       R +  ++  E +    E  ++
Sbjct: 1096 LFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDF 1149



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 11/242 (4%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           E  E GV  NV +YN++++ VC+             I+ A  +   M ++G  PDV S+S
Sbjct: 679 EFPEVGVCWNVASYNIVIHFVCQLGR----------IKEAHHLLLLMELKGYTPDVISYS 728

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            V++ Y R  +       +  MK KG+ P    Y S++  LC   ++ +AEE   EM+R 
Sbjct: 729 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 788

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+ P    Y      +  R D   A K + +M    +  P++ +Y  +I  F  +  M  
Sbjct: 789 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDI-TPDVLTYTAIISGFCQIGDMVE 847

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             ++++++   GL PD  ++T LI+G C+    K+A +    MI+ G  P  VT+ TL  
Sbjct: 848 AGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLID 907

Query: 264 GL 265
           GL
Sbjct: 908 GL 909



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 129/292 (44%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           Y  +I+  C++ RI  A   L  M  +G  P+V++Y+ ++NG CR               
Sbjct: 692 YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMK 751

Query: 47  RASLHPSERFEKTI----------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           R  L P+     +I            AE+ F EM  +GI PD   ++ ++  + +    +
Sbjct: 752 RKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIR 811

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      M  + I P V TY++++   C  G + +A +L  EM   G+ P + T+    
Sbjct: 812 AASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELI 871

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y        A +++  M + G C PN+ +Y  LI        +D   E+ +++   GL
Sbjct: 872 NGYCKAGHMKDAFRVHNHMIQAG-CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 930

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            P++ +Y  +++GLC+    +EA +   E    GL    VT+ TL     +S
Sbjct: 931 QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 982



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 7/242 (2%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR-AHQPQLSLDKLNFMKEKGICPTVATYS 118
           +R A +VF++M   G+   V S ++ L   S+  ++   ++       E G+C  VA+Y+
Sbjct: 634 LREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYN 693

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            V+  +C  GRI++A  LL  M   G  P   +Y+     Y    + +   KL   MK  
Sbjct: 694 IVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRK 753

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           GL  PN + Y  +IG+   + ++    E ++++   G+ PD   YT LI G C++   + 
Sbjct: 754 GL-KPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRA 812

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQ-SDMLRTWRRLK----KKLDEESITFGSEFQ 293
           A ++F EM  + + P  +T+  +  G  Q  DM+   +       K L+ +S+TF     
Sbjct: 813 ASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELIN 872

Query: 294 NY 295
            Y
Sbjct: 873 GY 874



 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 10/102 (9%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y +L+ G CK   +  A     EM  +G   +V TY+VL+ G  +R          K   
Sbjct: 1077 YENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKR----------KKFL 1126

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN 103
             A +VFD+MR  G+  D   F        +  +P   +D ++
Sbjct: 1127 EAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPID 1168


>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
          Length = 540

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 143/281 (50%), Gaps = 11/281 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GW     + M +    EM++ G++P+VV Y +L++  C+      S + ++ I 
Sbjct: 262 YTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCK------SGKCDEAI- 314

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              KVF EM   G  P    + ++++      +   +L      KE G    V T ++V+
Sbjct: 315 ---KVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVI 371

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C       A +++ EM ++G+ P+  TY+         +    A  L+++M+ DG C
Sbjct: 372 GAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDG-C 430

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P +++Y +++GMF +  R+DM  ++W  +K  G+ P +  ++ LI+GLC   + +EAC 
Sbjct: 431 EPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFDNRLEEACV 490

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           YF EM++KG+ P    F  L   L++   +   + + ++L+
Sbjct: 491 YFQEMLDKGIRPPGQLFSNLKEALVEGGRITLAQEVTQRLE 531



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 138/287 (48%), Gaps = 22/287 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  ++  + +  ++  A     +M   G++ ++  YN L++ + +           K ++
Sbjct: 191 FKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSK----------SKQVK 240

Query: 62  NAEKVFDEMRVRG-IEPDVTSFSIVLHVYSRAHQPQLSLDKLNF--MKEKGICPTVATYS 118
            A  +F EM+ +G   PD+ ++++++  +   H+  L + K  +  M + GI P V  Y 
Sbjct: 241 KAHAIFKEMKRKGRFIPDLKTYTVLMEGW--GHEKDLLMLKAVYQEMLDAGIKPDVVAYG 298

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++   C  G+ ++A ++  EM  +G  PS   Y          +  + A+K ++  KE 
Sbjct: 299 MLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKES 358

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G  +  + + N +IG +          ++ ++++ SG+GP+  +Y ++++ L + +K +E
Sbjct: 359 GFPM-EVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEE 417

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSD-----MLRTWRRLKKK 280
           A   F  M   G  P+  T+ T+  G+  S+      L+ W+++K+K
Sbjct: 418 AYNLFQRMERDGCEPELNTY-TMMVGMFCSNERVDMALKVWKQMKEK 463



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 111/228 (48%), Gaps = 2/228 (0%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG-ICPTVAT 116
           + ++ A + F++M   G++ D++ ++ ++ + S++ Q + +      MK KG   P + T
Sbjct: 202 RKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKT 261

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+ +++       +   + +  EM+  G+ P    Y      +      + A+K++ +M+
Sbjct: 262 YTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEME 321

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           E G C+P+ H Y +LI    ++ R+D   + +   K SG   ++ +   +I   C   ++
Sbjct: 322 ESG-CMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEF 380

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
             A +   EM + G+ P   T++ +   LI+S+ +     L ++++ +
Sbjct: 381 HHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERD 428



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 88/195 (45%), Gaps = 1/195 (0%)

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
           R +G       F  ++    +  Q +L    +  M+ +  C +  T+  +V+      ++
Sbjct: 146 RQQGFRYSAEGFHNLIEALGKIKQFRLVWSLVEAMRCRS-CLSKDTFKIIVRRYARARKV 204

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           ++A E   +M   G+      YN         K    A  ++++MK  G  +P++ +Y +
Sbjct: 205 KEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTV 264

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           L+  +     + M++ ++ ++  +G+ PD+ +Y MLI   C+  K  EA + F EM E G
Sbjct: 265 LMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESG 324

Query: 251 LLPQKVTFETLYRGL 265
            +P    +  L  GL
Sbjct: 325 CMPSPHVYCMLINGL 339


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 148/286 (51%), Gaps = 12/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G+CK   +      L EM+ +G+ PNVVTY  L+N +C+  +L           
Sbjct: 315 YNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNL----------S 364

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++FD+MRVRG+ P+  +++ ++  + +      +   L+ M   G  P+V TY+++V
Sbjct: 365 RAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALV 424

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR+++A  +L  MV  G+ P   +Y+     +   ++   A ++  +M E G+ 
Sbjct: 425 HGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGV- 483

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+  +Y+ LI       ++    +++ ++   GL PD  +YT LI+  C   +  +A +
Sbjct: 484 LPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALR 543

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL-DEESI 286
              EM+++G LP  VT+  L  GL +    +  +RL  KL  EES+
Sbjct: 544 LHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESV 589



 Score =  133 bits (335), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 152/299 (50%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI   CK  ++  A   L  M   GV  N+++YN ++NG+C +  +  SE  E    
Sbjct: 245 YNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRM--SEVGE---- 298

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + +EMR +G+ PD  +++ +++ + +       L  L+ M  KG+ P V TY++++
Sbjct: 299 ----LVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLI 354

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            C+C  G +  A E+  +M   G+ P+  TY      +  +   N A K+  +M   G  
Sbjct: 355 NCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFS 414

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN L+  +  L R+     I   +   GL PD+ SY+ +I G C +++  +A Q
Sbjct: 415 -PSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQ 473

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL-IQSDMLRTW----RRLKKKLDEESITFGSEFQNY 295
              EM+EKG+LP  VT+ +L +GL +Q  ++  +      +++ L  + +T+ S    Y
Sbjct: 474 MKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAY 532



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 119/249 (47%), Gaps = 11/249 (4%)

Query: 16  DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI 75
           D AER   +M+  GV PNV TYNV++ GV  +  L     F   +R  EK        GI
Sbjct: 189 DDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGF---MRKMEK-------EGI 238

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
            P+V +++ ++    +  + + ++  L  M   G+   + +Y+SV+  LC  GR+ +  E
Sbjct: 239 SPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGE 298

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           L+ EM   G+ P   TYN     +    + +  + L  +M   GL  PN+ +Y  LI   
Sbjct: 299 LVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLS-PNVVTYTTLINCM 357

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
                +    EI++ ++  GL P+  +YT LI G C+K    EA +   EMI  G  P  
Sbjct: 358 CKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSV 417

Query: 256 VTFETLYRG 264
           VT+  L  G
Sbjct: 418 VTYNALVHG 426



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 128/278 (46%), Gaps = 26/278 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+C+   ++ A + L EMI  G  P+VVTYN L++G C          F   ++
Sbjct: 385 YTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYC----------FLGRVQ 434

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M  RG+ PDV S+S V+  + R  +   +      M EKG+ P   TYSS++
Sbjct: 435 EAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLI 494

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC   ++ +A +L  EM+R G+ P   TY      Y    + + A++L+ +M + G  
Sbjct: 495 QGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGF- 553

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH------------- 228
           +P+  +Y++LI       R  + + +   +      PD  +Y  LI              
Sbjct: 554 LPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGL 613

Query: 229 --GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             G C K    EA + F  M+++   P    +  +  G
Sbjct: 614 VKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHG 651



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 129/247 (52%), Gaps = 14/247 (5%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G  P V++YN +L+ + RR+S +      +   +AE+VF +M   G+ P+V ++++++  
Sbjct: 162 GFAPTVLSYNAVLDALLRRSSSN-----HRDYDDAERVFRDMVRNGVSPNVYTYNVII-- 214

Query: 89  YSRAHQPQLSLDK-LNFMKE---KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
             R    Q  L+K L FM++   +GI P V TY++++   C   ++++A  LL  M   G
Sbjct: 215 --RGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGG 272

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           V  +  +YN       G+   +   +L  +M+  GL VP+  +YN L+  F     +   
Sbjct: 273 VAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGL-VPDEVTYNTLVNGFCKEGNLHQG 331

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             + +++ G GL P++ +YT LI+ +C+      A + F +M  +GL P + T+ TL  G
Sbjct: 332 LVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDG 391

Query: 265 LIQSDML 271
             Q  ++
Sbjct: 392 FCQKGLM 398



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 100/235 (42%), Gaps = 21/235 (8%)

Query: 36  TYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
            +N      C+  +LH   RF K  R A  +  ++      PD T  S+  H++   H  
Sbjct: 69  AHNFFFTPHCKCLALHILVRF-KLYRTAHSLAADLA--ATLPDPTGASLFRHLHDTFHLC 125

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
                            + A +  VVK L   G +  A  LL    R+G  P+  +YN  
Sbjct: 126 SSPFS------------SSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAV 173

Query: 156 F-----KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
                 +     +D + A +++R M  +G+  PN+++YN++I   ++   ++        
Sbjct: 174 LDALLRRSSSNHRDYDDAERVFRDMVRNGVS-PNVYTYNVIIRGVVSQGDLEKGLGFMRK 232

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           ++  G+ P++ +Y  LI   C+K+K KEA      M   G+    +++ ++  GL
Sbjct: 233 MEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGL 287



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 123/296 (41%), Gaps = 49/296 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC---------------R 46
           Y+++I G+C+   +  A +   EM+E+GV P+ VTY+ L+ G+C                
Sbjct: 455 YSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMM 514

Query: 47  RASLHPSERFEKTIRNAE----------KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           R  L P E    ++ NA           ++ DEM  RG  PD  ++S++++  ++  + +
Sbjct: 515 RRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTK 574

Query: 97  LSLDKLNFMKEKGICPTVATYSSV---------------VKCLCSCGRIEDAEELLGEMV 141
           ++   L  +  +   P   TY+++               VK  C  G + +A+ +   M+
Sbjct: 575 VAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTML 634

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
           +    P+A  YN     +    + + A  LY +++         H+  + I +  AL R 
Sbjct: 635 QRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFAC---HTVAV-IALVKALARE 690

Query: 202 DM----VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
            M     R + N ++   L  D     +L+    ++           EM + GLLP
Sbjct: 691 GMNDELSRLLQNILRSCRLN-DAKVAKVLVEVNFKEGNMDAVLNVLTEMAKDGLLP 745


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 138/267 (51%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI+G    N+   A   + +M++RG +P++VTY  ++NG+C+R            I 
Sbjct: 191 FTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD----------ID 240

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +M    IE DV  ++ ++    +      +L+    M  KGI P V TYSS++
Sbjct: 241 LALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLI 300

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLC+ GR  DA  LL +M+   + P+  T++     +        A KLY +M +  + 
Sbjct: 301 SCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI- 359

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ LI  F   +R+D  + ++  +      P++ +Y+ LI G C+ ++ +E  +
Sbjct: 360 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGME 419

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F EM ++GL+   VT+ TL  G  Q+
Sbjct: 420 LFREMSQRGLVGNTVTYTTLIHGFFQA 446



 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 141/283 (49%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI   C   R   A R L +MIER + PNVVT++ L++   +          E  + 
Sbjct: 296 YSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK----------EGKLV 345

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK++DEM  R I+PD+ ++S +++ +    +   +      M  K   P V TYS+++
Sbjct: 346 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLI 405

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R+E+  EL  EM + G+  +  TY      +   +D + A  +++QM   G+ 
Sbjct: 406 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVH 465

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YNIL+       ++     ++  ++ S + PD+ +Y ++I G+C+  K ++  +
Sbjct: 466 -PNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWE 524

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KG+ P  + + T+  G  +         L KK+ E+
Sbjct: 525 LFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKED 567



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 136/299 (45%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+    K+N+ ++      +M   G+  ++ TY++ +N  CRR+ L           
Sbjct: 86  FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSL--------- 136

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V  +M   G EPD+ + S +L+ Y  + +   ++  ++ M E G  P   T+++++
Sbjct: 137 -ALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLI 195

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L    +  +A  L+ +MV+ G  P   TY         R D + A+ L ++M E G  
Sbjct: 196 HGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKM-EKGKI 254

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++  YN +I        MD    ++ ++   G+ PD+ +Y+ LI  LC   +W +A +
Sbjct: 255 EADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASR 314

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
              +MIE+ + P  VTF  L    ++   L    +L     K+ +D +  T+ S    +
Sbjct: 315 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 373



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 111/229 (48%), Gaps = 11/229 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI G+CK  R++       EM +RG+  N VTY  L++G  +           +   
Sbjct: 401 YSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQ----------ARDCD 450

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA+ VF +M   G+ P++ +++I+L    +  +   ++    +++   + P + TY+ ++
Sbjct: 451 NAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMI 510

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + +C  G++ED  EL   +   GV P+   YN     +  +     A  L ++MKEDG  
Sbjct: 511 EGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDG-P 569

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           +PN  +YN LI   +     +   E+  +++  G   D  +  ++ + L
Sbjct: 570 LPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 618



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 120/313 (38%), Gaps = 52/313 (16%)

Query: 29  GVEPNVVTY-NVLLNGVCRRASLHPSERFEKTIRN----------AEKVFDEMRVRGIEP 77
           G  P V ++ N+  +G   R+    S  + + +RN          A  +F +M      P
Sbjct: 22  GNPPTVPSFFNLCGSGCWERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFP 81

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL------------- 124
            +  F+ +L   ++ ++ +L +     M+  GI   + TYS  + C              
Sbjct: 82  SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVL 141

Query: 125 ----------------------CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR 162
                                 C   RI DA  L+ +MV  G  P   T+          
Sbjct: 142 AKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLH 201

Query: 163 KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS 222
             A+ A+ L  QM + G C P++ +Y  ++        +D+   +   ++   +  D+  
Sbjct: 202 NKASEAVALVDQMVQRG-CQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 260

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRR-L 277
           Y  +I GLC+ +   +A   F EM  KG+ P   T+ +L   L      SD  R     +
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMI 320

Query: 278 KKKLDEESITFGS 290
           ++K++   +TF +
Sbjct: 321 ERKINPNVVTFSA 333


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 137/279 (49%), Gaps = 12/279 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G C + +       + EMI RG++ +V  + VL++G+C+   L           
Sbjct: 223 YGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGML----------V 272

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++FDEM  RG EP++ + + ++  Y       ++ +  + + E G    V TY+  +
Sbjct: 273 EAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFI 332

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR+ DA  +  EM R GV P+  TYN          + +GA ++ + M   GL 
Sbjct: 333 HGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGL- 391

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +  IL+       R+D    ++N +  SGL PD+ SYT+LIHG C  ++  EA  
Sbjct: 392 TPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMN 451

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKK 279
              +M  K L+P  VT+  L  GL +S  +   WR L +
Sbjct: 452 LLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNE 490



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 136/288 (47%), Gaps = 21/288 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++T LI G CK   +  A     EM+ RG EPN+VT   L+ G C + +          +
Sbjct: 257 VFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGN----------V 306

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++FD +   G + DV ++++ +H Y +  + + ++   + M  +G+ P + TY+S+
Sbjct: 307 DMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSL 366

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           + CLC  G +  A E++  M R+G+ P   T           K  + A+ L+ Q+ E GL
Sbjct: 367 IDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGL 426

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ SY ILI       RM     +  D+    L P + +Y+ LI GLC   +   A 
Sbjct: 427 -TPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAW 485

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
           +   EM  KG LP  +T+  L   L        W+  K+ LDE    F
Sbjct: 486 RLLNEMHVKGPLPDTITYSILLDAL--------WK--KQHLDEAVFLF 523



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 130/267 (48%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y   I+G+CK+ R+  A R   EM   GV PN+VTYN L++ +C+             + 
Sbjct: 328 YNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGE----------VS 377

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++   M   G+ PD+ +  I+L    ++ +   ++   N + E G+ P V +Y+ ++
Sbjct: 378 GAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILI 437

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C+  R+ +A  LL +M    + P   TY+C           + A +L  +M   G  
Sbjct: 438 HGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGP- 496

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+  +Y+IL+        +D    ++N +   GL PD+  YT++I G C+ ++  EA  
Sbjct: 497 LPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAIN 556

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F EM  K L+P  VT+  L+  + +S
Sbjct: 557 LFREMHMKNLVPDIVTYTILFNAVFKS 583



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 133/285 (46%), Gaps = 5/285 (1%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI-RN 62
           +++ G C    +  A  F  E++  G   N V+Y +L+NG+C    ++ +    + I + 
Sbjct: 112 TVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILINGLCENGRVNEAVNLLRMIEKE 171

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
            EK  D   V+G   +V  +SIV+    R        +  N M   G+CP   TY S+++
Sbjct: 172 KEKEKDGFFVKG---NVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIR 228

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  G+  +   L+ EM+R G+  S   +               A +++ +M   G   
Sbjct: 229 GLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGY-E 287

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN+ +   L+G +     +DM RE+++ +   G   D+ +Y + IHG C+  + ++A + 
Sbjct: 288 PNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRV 347

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           F EM  +G++P  VT+ +L   L ++  +     + K +    +T
Sbjct: 348 FDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLT 392



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 118/284 (41%), Gaps = 19/284 (6%)

Query: 12  INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMR 71
           +  +  +    G++++RG   + V  N +L G+C    +  +  F           DE+ 
Sbjct: 85  LGHVSFSFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFH----------DEIV 134

Query: 72  VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG--------ICPTVATYSSVVKC 123
             G   +  S+ I+++      +   +++ L  ++++         +   V  YS V+ C
Sbjct: 135 NNGFSLNEVSYGILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDC 194

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC  G +++  E   EM+ NGVCP+  TY    +   G         L  +M   GL V 
Sbjct: 195 LCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDV- 253

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           +++ + +LI        +   RE+++++   G  P++ + T L+ G C K     A + F
Sbjct: 254 SVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELF 313

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             + E G      T+     G  +   +R   R+  ++  E + 
Sbjct: 314 DAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVV 357



 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I G+CK  RID A     EM  + + P++VTY +L N V +  S     +F   IR
Sbjct: 538 YTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSGSNSYEWKFVNVIR 597

Query: 62  N 62
           +
Sbjct: 598 D 598


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 137/282 (48%), Gaps = 24/282 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+++ G CK  R   A + L EM ++G  PN+ TYNV++ G+C           E+ + 
Sbjct: 83  YTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCE----------ERKLD 132

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+K+ +EM VRG  PDV +++  +    +  +     +   F+    + P V +Y++V+
Sbjct: 133 EAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVD---EARKFLARMPVTPDVVSYTTVI 189

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G ++ A  +L +M   G  P   TY+     +    +   AM L   M + G C
Sbjct: 190 NGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLG-C 248

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PNM +YN L+G    L  +    ++  +++  G  PD+ SY   I GLC+ ++ K+A  
Sbjct: 249 RPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKA 308

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            F  M+E+G  P   ++  L   L +          KK+LD+
Sbjct: 309 VFDRMVERGCTPNASSYSMLVEELCK----------KKELDD 340



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 127/257 (49%), Gaps = 14/257 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S I G CK +R+D A +FL  M    V P+VV+Y  ++NG+C+   L           
Sbjct: 153 YNSFIKGLCKCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLD---------- 199

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++ D+M  RG  PDV ++S ++  + +  + + ++  L+ M + G  P +  Y+S++
Sbjct: 200 SASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLL 259

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G I  AE++L EM R G  P   +YN         +    A  ++ +M E G C
Sbjct: 260 GALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERG-C 318

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  SY++L+        +D    +    +      D+  YT+L+ GLC+  ++ EAC 
Sbjct: 319 TPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACA 378

Query: 242 YFVEMIEKGLLPQKVTF 258
            F +++++ +    V F
Sbjct: 379 LFSKVLDEKICEPDVFF 395



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 138/282 (48%), Gaps = 13/282 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+    ++  I  AE  L EM  RG  P+VV+YN  ++G+C+      +ER    ++
Sbjct: 255 YNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCK------AER----VK 304

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ VFD M  RG  P+ +S+S+++    +  +   ++  +   +EK     +  Y+ ++
Sbjct: 305 KAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLL 364

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             LC  GR ++A  L  +++   +C P    YN     +  R+  + A+++++QM E   
Sbjct: 365 DGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNC 424

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C  N+ ++NIL+      +R+     +   +   G  PD  +Y  L+  +C+  K   A 
Sbjct: 425 C--NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAAL 482

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           + F E ++ G +P  VT+  L  GL+  +M      L  KLD
Sbjct: 483 ELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLD 524



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 118/244 (48%), Gaps = 14/244 (5%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           MI++  +P+  T+ +LL G+CR      S + EK    A ++   M+  G  PD   ++ 
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCR------SNQLEK----ARQLLGRMKEMGCVPDDAIYNA 50

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           ++  YS+A     +   L  M +    PTV TY+++V  LC  GR +DA +LL EM   G
Sbjct: 51  LISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKG 110

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
             P+  TYN   +     +  + A K+  +M   G   P++ +YN  I      +R+D  
Sbjct: 111 CSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGY-FPDVVTYNSFIKGLCKCDRVDEA 169

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           R+    +    + PD+ SYT +I+GLC+      A +   +M  +G  P  VT+ +L  G
Sbjct: 170 RKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDG 226

Query: 265 LIQS 268
             + 
Sbjct: 227 FCKG 230



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 92/178 (51%), Gaps = 3/178 (1%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M +K   P   T++ +++ LC   ++E A +LLG M   G  P    YN     Y   KD
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSY-NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSY 223
              A K   +M ++  C+P + +Y NI+ G+  A    D V+ + ++++  G  P++ +Y
Sbjct: 61  FGQAFKFLAEMVKNH-CLPTVVTYTNIVDGLCKAGRTKDAVK-LLDEMRDKGCSPNIYTY 118

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            +++ GLCE++K  EA +   EM  +G  P  VT+ +  +GL + D +   R+   ++
Sbjct: 119 NVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM 176



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 120/279 (43%), Gaps = 21/279 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGV-EPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           +YT L+ G CK  R D A     ++++  + EP+V  YNV+L+  C+R          + 
Sbjct: 359 LYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKR----------RQ 408

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           I  A ++  +M  R    +V +++I++H      +   +   L  M ++G  P   TY +
Sbjct: 409 IDKALQIHKQMLERNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGT 467

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +V  +C CG+   A EL  E V+ G  P   TY+           A  A  L+ ++    
Sbjct: 468 LVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKL---- 523

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG-LCEKQKWKE 238
               ++  +N +I  +      D+  +++ ++  S + P+  ++   I G L + +   +
Sbjct: 524 ----DVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAESLGK 579

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A   F   ++ G  P      TL     +   L   RR+
Sbjct: 580 ARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRI 618


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 148/286 (51%), Gaps = 12/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK      A     EM+  G+ P+V+TY  L++ +C+  +++ +  F     
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEF----- 367

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 D+MRVRG+ P+  +++ ++  +S+      +   L  M + G  P+V TY++++
Sbjct: 368 -----LDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALI 422

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++ DA  +L +M   G+ P   +Y+     +    D + A+++ R+M   G+ 
Sbjct: 423 NGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGI- 481

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y+ LI  F    R     ++++++   GL PD  +YT LI+  C +   ++A Q
Sbjct: 482 KPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQ 541

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL-DEESI 286
              EM+EKG+LP  VT+  L  GL +    R  +RL  KL  EES+
Sbjct: 542 LHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESV 587



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 141/298 (47%), Gaps = 32/298 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G+ +   ++ A R L EMI+ G  P+VVTYN L+NG C              + 
Sbjct: 383 YTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHC----------IAGKMV 432

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  V ++M+ +G+ PDV S+S VL  + R++    +L     M  KGI P   TYSS++
Sbjct: 433 DAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLI 492

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C   R ++A +L  EM+R G+ P   TY      Y    D   A++L+ +M E G+ 
Sbjct: 493 QGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGV- 551

Query: 182 VPNMHSYNILIGMFMALNRMDMVRE-------------IWNDVKGSGL-----GPDLDSY 223
           +P++ +Y++LI     LN+    RE             + +DV    L       +  S 
Sbjct: 552 LPDVVTYSVLIN---GLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSV 608

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
             LI G C K    EA Q F  M+EK   P    +  +  G  +   +R    L K++
Sbjct: 609 VSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEM 666



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 132/292 (45%), Gaps = 29/292 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++  ++  + ++  ID A   +      G  P V++YN +L+   R          ++ I
Sbjct: 136 VFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRS---------KRNI 186

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE VF EM    + P+V +++I++  +  A    ++L   + M++KG  P V TY+++
Sbjct: 187 SFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTL 246

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C   +I+D  ELL  M   G+ P+  +YN            NG  +  R MKE   
Sbjct: 247 IDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVI---------NGLCREGR-MKEISF 296

Query: 181 CVPNMH---------SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
            +  M+         +YN LI  +           +  ++   GL P + +YT LIH +C
Sbjct: 297 VLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMC 356

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD-MLRTWRRLKKKLD 282
           +      A ++  +M  +GL P + T+ TL  G  Q   M   +R LK+ +D
Sbjct: 357 KAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMID 408



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 41/223 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           YT+LI  +C    +  A +   EM+E+GV P+VVTY+VL+NG+ ++A    ++R      
Sbjct: 523 YTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLF 582

Query: 56  ----------FEKTIRN------------------------AEKVFDEMRVRGIEPDVTS 81
                     +   I N                        A++VF+ M  +  +PD T+
Sbjct: 583 YEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTA 642

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           +++++H + R    + +      M + G      T  ++VK L   G++ +   ++  ++
Sbjct: 643 YNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVL 702

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           R+     AE      +      + +  + +  +M +DG  +PN
Sbjct: 703 RSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGF-LPN 744


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 144/293 (49%), Gaps = 26/293 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           YT+LIYG+C  +++  A   L EM+ + + PNV TYN+L++ +C+               
Sbjct: 237 YTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVML 296

Query: 47  RASLHPSERFEKTI----------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +A + P      T+          + A+ VF+ M + G+ PDV S++I+++ + +     
Sbjct: 297 KACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVD 356

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+    M +K + P + TYSS++  LC  GRI    +L+ EM   G+  +  TYN   
Sbjct: 357 EALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLI 416

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A+ L+ +MK+ G+  P   ++ IL+       R+   +E + D+   G 
Sbjct: 417 DGLCKNGHLDRAIALFNKMKDQGI-RPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGY 475

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
             D+  Y ++I+G C++   +EA     +M E G +P  VTF+ +   L + D
Sbjct: 476 HLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIIINALFKKD 528



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 140/285 (49%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CKI     A + + ++  R  +PNV  YN +++ +C+           + + 
Sbjct: 167 YGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKY----------QLVS 216

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM  +GI  DV +++ +++ +  A + + ++  LN M  K I P V TY+ +V
Sbjct: 217 EAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILV 276

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++++A+ +L  M++  V P   TY+     Y    +   A  ++  M   G+ 
Sbjct: 277 DALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGV- 335

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++HSY ILI  F     +D    ++ ++    + P + +Y+ LI GLC+  +      
Sbjct: 336 TPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWD 395

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM ++G+    +T+ +L  GL ++  L     L  K+ ++ I
Sbjct: 396 LIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGI 440



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 129/272 (47%), Gaps = 11/272 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++I   CK   +  A     EM  +G+  +VVTY  L+ G C  + L          
Sbjct: 201 MYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKL---------- 250

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  + +EM ++ I P+V +++I++    +  + + + + L  M +  + P V TYS++
Sbjct: 251 KEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTL 310

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +        ++ A+ +   M   GV P   +Y      +   K  + A+ L+++M +  +
Sbjct: 311 MDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNM 370

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VP + +Y+ LI       R+  V ++ ++++  G+  ++ +Y  LI GLC+      A 
Sbjct: 371 -VPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAI 429

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
             F +M ++G+ P   TF  L  GL +   L+
Sbjct: 430 ALFNKMKDQGIRPCSFTFTILLDGLCKGGRLK 461



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 132/299 (44%), Gaps = 46/299 (15%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C + +I      L ++++RG +P+ +T+  L+ G+C +  ++ +  F        
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFH------- 152

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
              D++  +GI+ D  S+  +++   +    + ++  +  +  +   P V  Y++++  L
Sbjct: 153 ---DKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDAL 209

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C    + +A  L  EM   G+     TY      +        A+ L  +M    +  PN
Sbjct: 210 CKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTIN-PN 268

Query: 185 MHSYNILIG-----------------MFMALNRMDMV------------------REIWN 209
           +++YNIL+                  M  A  + D++                  + ++N
Sbjct: 269 VYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFN 328

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            +   G+ PD+ SYT+LI+G C+ +   EA   F EM +K ++P  VT+ +L  GL +S
Sbjct: 329 AMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKS 387



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 10/179 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI G CK  RI      + EM +RG+  NV+TYN L++G+C+   L           
Sbjct: 377 YSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLD---------- 426

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F++M+ +GI P   +F+I+L    +  + + + +    +  KG    V  Y+ ++
Sbjct: 427 RAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMI 486

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              C  G +E+A  +L +M  NG  P+A T++        + + + A KL RQM   GL
Sbjct: 487 NGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQMICRGL 545



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 120/293 (40%), Gaps = 49/293 (16%)

Query: 47  RASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMK 106
            +  H      + + +A   F+ M      P +  F+ +L  +++      ++   + ++
Sbjct: 27  HSHFHSQPPSIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLE 86

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY------- 159
            KGI P + T + ++ C C  G+I     +L ++++ G  P   T+    K         
Sbjct: 87  LKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVN 146

Query: 160 -----------RGRK-----------------DANGAMKLYRQMKEDG-LCVPNMHSYNI 190
                      +G K                 D  GA+KL R++  DG L  PN+  YN 
Sbjct: 147 KALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKI--DGRLTKPNVEMYNT 204

Query: 191 LIGMFMALNRMDMVRE---IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           +I    AL +  +V E   +++++   G+  D+ +YT LI+G C   K KEA     EM+
Sbjct: 205 IID---ALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMV 261

Query: 248 EKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGSEFQNY 295
            K + P   T+  L   L +   ++  +      LK  +  + IT+ +    Y
Sbjct: 262 LKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGY 314


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 147/293 (50%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+CKI+ +  A   L + + +G  P+ VTY  L+NG+C           E  + 
Sbjct: 293 YNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCA----------EGDVE 342

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F+E + +GI+PD+  ++ ++           +L  +N M E+G  P + TY+ V+
Sbjct: 343 RALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVI 402

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G I DA  ++ + +  G  P   T+N     Y  R   + A++L  +M E G+ 
Sbjct: 403 NGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGI- 461

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN ++       +++ V E + ++   G  P+  +Y +LI   C   K +EA +
Sbjct: 462 APDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASK 521

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
             V+M ++GL P  V+F TL  G  ++  L     L +KL+E+  +  ++  N
Sbjct: 522 VIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFN 574



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 133/293 (45%), Gaps = 46/293 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SL+ G C    I  A + + EM E G  P++ TYN+++NG+C+  +          I
Sbjct: 362 VYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGN----------I 411

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A  V ++  ++G  PDV +F+ ++  Y +  +   +L  +  M E GI P   TY+SV
Sbjct: 412 SDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSV 471

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRK---------------- 163
           +  LC  G++ +  E   EM+  G  P+  TYN   + + R  K                
Sbjct: 472 LNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGL 531

Query: 164 ------------------DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
                             D  GA  L+++++E G       ++N LIG F     M M  
Sbjct: 532 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSA-TADTFNTLIGAFSGKLNMHMAE 590

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
           +I++++   G   D  +Y +LI G C+      A  + VEMI+KG +P   TF
Sbjct: 591 KIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTF 643



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 138/294 (46%), Gaps = 17/294 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +++  CK   +  A   LG++I+RG+  N+ TYN+ + G+C    L           
Sbjct: 189 FNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRL----------P 238

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D MR   + PDV +++ ++    +   PQ ++  L  M  +G  P   TY++++
Sbjct: 239 EAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTII 297

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    +++A ELL + V  G  P   TY           D   A++L+ + +  G+ 
Sbjct: 298 DGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGI- 356

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YN L+        +    ++ N++   G  PD+ +Y ++I+GLC+     +A  
Sbjct: 357 KPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATV 416

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE-----ESITFGS 290
              + I KG LP   TF TL  G  +   L +  +L +++ E     ++IT+ S
Sbjct: 417 VMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNS 470



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 128/290 (44%), Gaps = 23/290 (7%)

Query: 16  DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI--------------- 60
           D A +    M+  GV P++ T+ + L   C  A  H + R  + +               
Sbjct: 102 DQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGL 161

Query: 61  ------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV 114
                  +A ++FD+M    + P++ +F+ VLH   +      +   L  + ++G+   +
Sbjct: 162 YAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINL 221

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            TY+  ++ LC  GR+ +A  L+  M R    P   TYN   +    +     AM   R+
Sbjct: 222 FTYNIWIRGLCEAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRR 280

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M   G C+P+  +YN +I  +  ++ +    E+  D    G  PD  +Y  LI+GLC + 
Sbjct: 281 MMNQG-CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEG 339

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
             + A + F E   KG+ P  V + +L +GL    ++    ++  ++ EE
Sbjct: 340 DVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEE 389



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 25/171 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH---------- 51
           Y  LI  +C+ N+++ A + + +M + G+ P+ V++N L+ G CR   L           
Sbjct: 503 YNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLE 562

Query: 52  ------PSERFEKTI---------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                  ++ F   I           AEK+FDEM  +G   D  ++ +++    +     
Sbjct: 563 EKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVD 622

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
            +   L  M +KG  P+++T+  V+  L    R+  A  ++  MV+ GV P
Sbjct: 623 RAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 673


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 147/293 (50%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+CKI+ +  A   L + + +G  P+ VTY  L+NG+C           E  + 
Sbjct: 294 YNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCA----------EGDVE 343

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F+E + +GI+PD+  ++ ++           +L  +N M E+G  P + TY+ V+
Sbjct: 344 RALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVI 403

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G I DA  ++ + +  G  P   T+N     Y  R   + A++L  +M E G+ 
Sbjct: 404 NGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGI- 462

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN ++       +++ V E + ++   G  P+  +Y +LI   C   K +EA +
Sbjct: 463 APDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASK 522

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
             V+M ++GL P  V+F TL  G  ++  L     L +KL+E+  +  ++  N
Sbjct: 523 VIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFN 575



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 133/293 (45%), Gaps = 46/293 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SL+ G C    I  A + + EM E G  P++ TYN+++NG+C+  +          I
Sbjct: 363 VYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGN----------I 412

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A  V ++  ++G  PDV +F+ ++  Y +  +   +L  +  M E GI P   TY+SV
Sbjct: 413 SDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSV 472

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRK---------------- 163
           +  LC  G++ +  E   EM+  G  P+  TYN   + + R  K                
Sbjct: 473 LNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGL 532

Query: 164 ------------------DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
                             D  GA  L+++++E G       ++N LIG F     M M  
Sbjct: 533 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSA-TADTFNTLIGAFSGKLNMHMAE 591

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
           +I++++   G   D  +Y +LI G C+      A  + VEMI+KG +P   TF
Sbjct: 592 KIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTF 644



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 138/294 (46%), Gaps = 17/294 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +++  CK   +  A   LG++I+RG+  N+ TYN+ + G+C    L           
Sbjct: 190 FNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRL----------P 239

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D MR   + PDV +++ ++    +   PQ ++  L  M  +G  P   TY++++
Sbjct: 240 EAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTII 298

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    +++A ELL + V  G  P   TY           D   A++L+ + +  G+ 
Sbjct: 299 DGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGI- 357

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YN L+        +    ++ N++   G  PD+ +Y ++I+GLC+     +A  
Sbjct: 358 KPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATV 417

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE-----ESITFGS 290
              + I KG LP   TF TL  G  +   L +  +L +++ E     ++IT+ S
Sbjct: 418 VMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNS 471



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 128/290 (44%), Gaps = 23/290 (7%)

Query: 16  DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI--------------- 60
           D A +    M+  GV P++ T+ + L   C  A  H + R  + +               
Sbjct: 103 DQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGL 162

Query: 61  ------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV 114
                  +A ++FD+M    + P++ +F+ VLH   +      +   L  + ++G+   +
Sbjct: 163 YAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINL 222

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            TY+  ++ LC  GR+ +A  L+  M R    P   TYN   +    +     AM   R+
Sbjct: 223 FTYNIWIRGLCEAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRR 281

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M   G C+P+  +YN +I  +  ++ +    E+  D    G  PD  +Y  LI+GLC + 
Sbjct: 282 MMNQG-CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEG 340

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
             + A + F E   KG+ P  V + +L +GL    ++    ++  ++ EE
Sbjct: 341 DVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEE 390



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 25/171 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH---------- 51
           Y  LI  +C+ N+++ A + + +M + G+ P+ V++N L+ G CR   L           
Sbjct: 504 YNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLE 563

Query: 52  ------PSERFEKTI---------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                  ++ F   I           AEK+FDEM  +G   D  ++ +++    +     
Sbjct: 564 EKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVD 623

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
            +   L  M +KG  P+++T+  V+  L    R+  A  ++  MV+ GV P
Sbjct: 624 RAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 674


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 145/299 (48%), Gaps = 16/299 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+C++  +  A     +M  R + P+ +TYN L+NG+C+           + I
Sbjct: 372 IYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKM----------EMI 421

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE +  EM   G++P V +F+ ++  Y RA Q +     L+ M++KGI   V ++ SV
Sbjct: 422 TEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSV 481

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           VK  C  G+I +A  +L +M+   V P+A+ YN     Y        A  L  +MK  G+
Sbjct: 482 VKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGV 541

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              ++ +YN+L+      +++D   E+  ++   GL PD+ SY  +I   C K     A 
Sbjct: 542 SA-SIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRAL 600

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRL-KKKLDEESITFGSEFQN 294
           +   EM +  + P   T+  L   L  +    DM   ++ +  K ++  S  +G+  +N
Sbjct: 601 ELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIYGTRCEN 659



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 134/301 (44%), Gaps = 44/301 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G  K   ++   R   +M++ G +PNVVTYNVLL+G+CR      + R ++T  
Sbjct: 233 YNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCR------AGRMDET-- 284

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + DEM    + PD  ++SI+    +R    +  L       +KG+     T S ++
Sbjct: 285 --RALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILL 342

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
             LC  G++  AE++L  +V  G+ P+   YN     Y   +D  GA  ++ QMK     
Sbjct: 343 NGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIR 402

Query: 178 ----------DGLCV--------------------PNMHSYNILIGMFMALNRMDMVREI 207
                     +GLC                     P++ ++N LI  +    +++    +
Sbjct: 403 PDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTV 462

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            +D++  G+  ++ S+  ++   C+  K  EA     +MI K ++P    + ++    I+
Sbjct: 463 LSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIE 522

Query: 268 S 268
           S
Sbjct: 523 S 523



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 121/294 (41%), Gaps = 44/294 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L  G  +           GE +++GV     T ++LLNG+C+          +  + 
Sbjct: 303 YSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCK----------DGKVA 352

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+V + +   G+ P    ++ +++ Y +    Q +      MK + I P   TY++++
Sbjct: 353 KAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALI 412

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
             LC    I +AE+L+ EM ++GV PS ET+N     Y           +   M++ G+ 
Sbjct: 413 NGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIK 472

Query: 181 ---------------------------------CVPNMHSYNILIGMFMALNRMDMVREI 207
                                             VPN   YN +I  ++     +    +
Sbjct: 473 SNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLL 532

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
              +K SG+   + +Y +L+ GLC+  +  EA +    +  +GL P  V++ T+
Sbjct: 533 VEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTI 586



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 122/276 (44%), Gaps = 11/276 (3%)

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
           E    P+  +YNV++ G+ R               +A KVFDEM  RG+ P+  +++ ++
Sbjct: 188 EGAPPPDAFSYNVVIAGLWRSGK----------GSDALKVFDEMVDRGVAPNQITYNTMI 237

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
             + +    +      + M + G  P V TY+ ++  LC  GR+++   L+ EM    + 
Sbjct: 238 DGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSML 297

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P   TY+  F       D+   + L+ +  + G+ +   ++ +IL+       ++    +
Sbjct: 298 PDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVII-GAYTCSILLNGLCKDGKVAKAEQ 356

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +   +  +GL P    Y  LI+G C+ +  + A   F +M  + + P  +T+  L  GL 
Sbjct: 357 VLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLC 416

Query: 267 QSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR 302
           + +M+     L  ++++  +    E  N     Y R
Sbjct: 417 KMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGR 452


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 143/293 (48%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G+ K    D A     EM++RG+ P+VVTY+ ++  +C+           + + 
Sbjct: 204 YNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCK----------AQAMD 253

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V + M   G+ PD  +++ +LH Y  + QP+ ++  L  M+  G+ P V TYSS++
Sbjct: 254 KAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLM 313

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A ++   M + G+ P   TY    + Y  +        L   M  +G+ 
Sbjct: 314 NYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI- 372

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ H +NILI  +    ++D    +++ ++  GL P++  Y  +I  LC+     +A  
Sbjct: 373 QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAML 432

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           YF +MI++GL P  + + +L  GL   D       L  ++ +  I   + F N
Sbjct: 433 YFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFN 485



 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 135/260 (51%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I   CK   +D A   L  M++ GV P+ +TYN +L+G C  +S  P E       
Sbjct: 239 YSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYC--SSGQPKE------- 289

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A     +MR  G+EP+V ++S +++   +  +   +    + M ++G+ P +ATY +++
Sbjct: 290 -AIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLL 348

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +   + G + +   LL  MVRNG+ P    +N     Y  ++  + AM ++ +M++ GL 
Sbjct: 349 QGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLN 408

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+  Y  +I +      +D     +  +   GL P++  YT LIHGLC   KW +A +
Sbjct: 409 -PNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEE 467

Query: 242 YFVEMIEKGLLPQKVTFETL 261
             +EM+++G+    + F ++
Sbjct: 468 LILEMLDRGICLNTIFFNSI 487



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 134/292 (45%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           Y+SL+   CK  R   A +    M +RG+EP++ TY  LL G   + +L           
Sbjct: 309 YSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMV 368

Query: 51  ----HPSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                P              ++ +  A  VF +MR  G+ P+V  +  V+ V  ++    
Sbjct: 369 RNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVD 428

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++     M ++G+ P +  Y+S++  LC+C + + AEEL+ EM+  G+C +   +N   
Sbjct: 429 DAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSII 488

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +        + KL+  M   G+  P++ +YN LI       +MD   ++   +   G+
Sbjct: 489 DSHCKEGRVIESEKLFDLMVRIGV-KPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGV 547

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            PD+ +Y  LI+G C   +  +A   F EM+  G+ P  +T+  + +GL  +
Sbjct: 548 KPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHT 599



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 139/301 (46%), Gaps = 44/301 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTSLI+G C  ++ D AE  + EM++RG+  N + +N +++  C+          E  +
Sbjct: 448 VYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCK----------EGRV 497

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             +EK+FD M   G++PD+ +++ ++     A +   +   L  M   G+ P + TY ++
Sbjct: 498 IESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTL 557

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG- 179
           +   C   R++DA  L  EMV +GV P+  TYN   +     +    A +LY  + + G 
Sbjct: 558 INGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGT 617

Query: 180 -----------------------------LCVPNMH----SYNILIGMFMALNRMDMVRE 206
                                        LC+ ++     ++NI+IG  +   RMD  ++
Sbjct: 618 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKD 677

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++     +GL PD+ +Y+++   L E+   +E    F+ M E G         ++ R L+
Sbjct: 678 LFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLL 737

Query: 267 Q 267
           Q
Sbjct: 738 Q 738



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 121/261 (46%), Gaps = 9/261 (3%)

Query: 2   YTSLIYGWCKINRI-DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +T L+ G C   R  D  +  L  M E G  P+V +YN LL G+C         R ++ +
Sbjct: 130 FTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLC------DENRSQEAL 183

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                + D+ R  G  PDV S++ VL+ + +      +    + M ++GI P V TYSS+
Sbjct: 184 ELLHMMADD-RGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSI 242

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC    ++ A E+L  MV+NGV P   TYN     Y        A+   ++M+ DG+
Sbjct: 243 IAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGV 302

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+ +Y+ L+       R    R+I++ +   GL PD+ +Y  L+ G   K    E  
Sbjct: 303 -EPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMH 361

Query: 241 QYFVEMIEKGLLPQKVTFETL 261
                M+  G+ P    F  L
Sbjct: 362 ALLDLMVRNGIQPDHHVFNIL 382



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 133/292 (45%), Gaps = 26/292 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKT 59
           ++  LI  + K  ++D A     +M + G+ PNVV Y  +++ +C+  S+  +   FE+ 
Sbjct: 378 VFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQM 437

Query: 60  I------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           I                          AE++  EM  RGI  +   F+ ++  + +  + 
Sbjct: 438 IDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 497

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             S    + M   G+ P + TY++++   C  G++++A +LL  MV  GV P   TY   
Sbjct: 498 IESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTL 557

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y      + A+ L+++M   G+  PN+ +YNI++       R    +E++  +  SG
Sbjct: 558 INGYCRVSRMDDALALFKEMVSSGVS-PNIITYNIILQGLFHTRRTAAAKELYVSITKSG 616

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +L +Y +++HGLC+     EA + F  +    L  +  TF  +   L++
Sbjct: 617 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 668



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 9/217 (4%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG---ICPTVATYS 118
           +A  VFDE+  RG    +   +  L   +R H P  ++ + N M   G   + PTV TY+
Sbjct: 38  DARHVFDELLRRGRGASIYGLNRALADVAR-HSPAAAVSRYNRMARAGAGKVTPTVHTYA 96

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL-YRQMKE 177
            ++ C C  GR++     LG +V+ G    A T+    K     K  + AM +  R+M E
Sbjct: 97  ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTE 156

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWN---DVKGSGLGPDLDSYTMLIHGLCEKQ 234
            G C+P++ SYN L+      NR     E+ +   D +G G  PD+ SY  +++G  ++ 
Sbjct: 157 LG-CIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEG 215

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              +A   + EM+++G+LP  VT+ ++   L ++  +
Sbjct: 216 DSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAM 252



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 126/291 (43%), Gaps = 15/291 (5%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A     E++ RG   ++   N  L  V R +      R+ +  R             + P
Sbjct: 39  ARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAG--------KVTP 90

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL- 136
            V +++I++    RA +  L    L  + +KG      T++ ++K LC+  R  DA ++ 
Sbjct: 91  TVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIV 150

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED--GLCVPNMHSYNILIGM 194
           L  M   G  P   +YN   K       +  A++L   M +D  G   P++ SYN ++  
Sbjct: 151 LRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNG 210

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
           F      D     ++++   G+ PD+ +Y+ +I  LC+ Q   +A +    M++ G++P 
Sbjct: 211 FFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 270

Query: 255 KVTFETLYRGLIQS----DMLRTWRRLKKKLDEESITFGSEFQNYHFKPYR 301
            +T+ ++  G   S    + + T ++++    E ++   S   NY  K  R
Sbjct: 271 CMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGR 321



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 25/192 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV--CRRAS---------L 50
           Y +LI G+C+++R+D A     EM+  GV PN++TYN++L G+   RR +          
Sbjct: 554 YGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSIT 613

Query: 51  HPSERFEKTIRN--------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
               + E +  N              A ++F  + +  ++ +  +F+I++    +  +  
Sbjct: 614 KSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMD 673

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + D        G+ P V TYS + + L   G +E+ ++L   M  NG    +   N   
Sbjct: 674 EAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIV 733

Query: 157 KEYRGRKDANGA 168
           ++   R D   A
Sbjct: 734 RKLLQRGDITRA 745


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 143/293 (48%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G+ K    D A     EM++RG+ P+VVTY+ ++  +C+           + + 
Sbjct: 204 YNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCK----------AQAMD 253

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V + M   G+ PD  +++ +LH Y  + QP+ ++  L  M+  G+ P V TYSS++
Sbjct: 254 KAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLM 313

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A ++   M + G+ P   TY    + Y  +        L   M  +G+ 
Sbjct: 314 NYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI- 372

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ H +NILI  +    ++D    +++ ++  GL P++  Y  +I  LC+     +A  
Sbjct: 373 QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAML 432

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           YF +MI++GL P  + + +L  GL   D       L  ++ +  I   + F N
Sbjct: 433 YFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFN 485



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 135/260 (51%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I   CK   +D A   L  M++ GV P+ +TYN +L+G C  +S  P E       
Sbjct: 239 YSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYC--SSGQPKE------- 289

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A     +MR  G+EP+V ++S +++   +  +   +    + M ++G+ P +ATY +++
Sbjct: 290 -AIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLL 348

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +   + G + +   LL  MVRNG+ P    +N     Y  ++  + AM ++ +M++ GL 
Sbjct: 349 QGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLN 408

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+  Y  +I +      +D     +  +   GL P++  YT LIHGLC   KW +A +
Sbjct: 409 -PNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEE 467

Query: 242 YFVEMIEKGLLPQKVTFETL 261
             +EM+++G+    + F ++
Sbjct: 468 LILEMLDRGICLNTIFFNSI 487



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 134/292 (45%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           Y+SL+   CK  R   A +    M +RG+EP++ TY  LL G   + +L           
Sbjct: 309 YSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMV 368

Query: 51  ----HPSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                P              ++ +  A  VF +MR  G+ P+V  +  V+ V  ++    
Sbjct: 369 RNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVD 428

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++     M ++G+ P +  Y+S++  LC+C + + AEEL+ EM+  G+C +   +N   
Sbjct: 429 DAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSII 488

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +        + KL+  M   G+  P++ +YN LI       +MD   ++   +   G+
Sbjct: 489 DSHCKEGRVIESEKLFDLMVRIGV-KPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGV 547

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            PD+ +Y  LI+G C   +  +A   F EM+  G+ P  +T+  + +GL  +
Sbjct: 548 KPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHT 599



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 139/301 (46%), Gaps = 44/301 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTSLI+G C  ++ D AE  + EM++RG+  N + +N +++  C+          E  +
Sbjct: 448 VYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCK----------EGRV 497

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             +EK+FD M   G++PD+ +++ ++     A +   +   L  M   G+ P + TY ++
Sbjct: 498 IESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTL 557

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG- 179
           +   C   R++DA  L  EMV +GV P+  TYN   +     +    A +LY  + + G 
Sbjct: 558 INGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGT 617

Query: 180 -----------------------------LCVPNMH----SYNILIGMFMALNRMDMVRE 206
                                        LC+ ++     ++NI+IG  +   RMD  ++
Sbjct: 618 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKD 677

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++     +GL PD+ +Y+++   L E+   +E    F+ M E G         ++ R L+
Sbjct: 678 LFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLL 737

Query: 267 Q 267
           Q
Sbjct: 738 Q 738



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 121/261 (46%), Gaps = 9/261 (3%)

Query: 2   YTSLIYGWCKINRI-DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +T L+ G C   R  D  +  L  M E G  P+V +YN LL G+C         R ++ +
Sbjct: 130 FTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDE------NRSQEAL 183

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                + D+ R  G  PDV S++ VL+ + +      +    + M ++GI P V TYSS+
Sbjct: 184 ELLHMMADD-RGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSI 242

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC    ++ A E+L  MV+NGV P   TYN     Y        A+   ++M+ DG+
Sbjct: 243 IAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGV 302

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+ +Y+ L+       R    R+I++ +   GL PD+ +Y  L+ G   K    E  
Sbjct: 303 -EPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMH 361

Query: 241 QYFVEMIEKGLLPQKVTFETL 261
                M+  G+ P    F  L
Sbjct: 362 ALLDLMVRNGIQPDHHVFNIL 382



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 133/292 (45%), Gaps = 26/292 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKT 59
           ++  LI  + K  ++D A     +M + G+ PNVV Y  +++ +C+  S+  +   FE+ 
Sbjct: 378 VFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQM 437

Query: 60  I------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           I                          AE++  EM  RGI  +   F+ ++  + +  + 
Sbjct: 438 IDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 497

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             S    + M   G+ P + TY++++   C  G++++A +LL  MV  GV P   TY   
Sbjct: 498 IESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTL 557

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y      + A+ L+++M   G+  PN+ +YNI++       R    +E++  +  SG
Sbjct: 558 INGYCRVSRMDDALALFKEMVSSGVS-PNIITYNIILQGLFHTRRTAAAKELYVSITKSG 616

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +L +Y +++HGLC+     EA + F  +    L  +  TF  +   L++
Sbjct: 617 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 668



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 9/217 (4%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG---ICPTVATYS 118
           +A  VFDE+  RG    +   +  L   +R H P  ++ + N M   G   + PTV TY+
Sbjct: 38  DARHVFDELLRRGRGASIYGLNRALADVAR-HSPAAAVSRYNRMARAGAGKVTPTVHTYA 96

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL-YRQMKE 177
            ++ C C  GR++     LG +V+ G    A T+    K     K  + AM +  R+M E
Sbjct: 97  ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTE 156

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWN---DVKGSGLGPDLDSYTMLIHGLCEKQ 234
            G C+P++ SYN L+      NR     E+ +   D +G G  PD+ SY  +++G  ++ 
Sbjct: 157 LG-CIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEG 215

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              +A   + EM+++G+LP  VT+ ++   L ++  +
Sbjct: 216 DSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAM 252



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 126/291 (43%), Gaps = 15/291 (5%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A     E++ RG   ++   N  L  V R +      R+ +  R             + P
Sbjct: 39  ARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAG--------KVTP 90

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL- 136
            V +++I++    RA +  L    L  + +KG      T++ ++K LC+  R  DA ++ 
Sbjct: 91  TVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIV 150

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED--GLCVPNMHSYNILIGM 194
           L  M   G  P   +YN   K       +  A++L   M +D  G   P++ SYN ++  
Sbjct: 151 LRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNG 210

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
           F      D     ++++   G+ PD+ +Y+ +I  LC+ Q   +A +    M++ G++P 
Sbjct: 211 FFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 270

Query: 255 KVTFETLYRGLIQS----DMLRTWRRLKKKLDEESITFGSEFQNYHFKPYR 301
            +T+ ++  G   S    + + T ++++    E ++   S   NY  K  R
Sbjct: 271 CMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGR 321



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 25/188 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV--CRRAS---------L 50
           Y +LI G+C+++R+D A     EM+  GV PN++TYN++L G+   RR +          
Sbjct: 554 YGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSIT 613

Query: 51  HPSERFEKTIRN--------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
               + E +  N              A ++F  + +  ++ +  +F+I++    +  +  
Sbjct: 614 KSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMD 673

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + D        G+ P V TYS + + L   G +E+ ++L   M  NG    +   N   
Sbjct: 674 EAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIV 733

Query: 157 KEYRGRKD 164
           ++   R D
Sbjct: 734 RKLLQRGD 741


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 150/298 (50%), Gaps = 22/298 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI G CK  ++  A++ L  M  +G EP+++TYN L+NG+C    L           
Sbjct: 254 FTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLE---------- 303

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+F+ +  RGI+ +V S++I+++ Y +  +   +      M+ KG+ P+  TY++++
Sbjct: 304 DATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLI 363

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+  A++L  EM   G      TY               A+ L++ +K+    
Sbjct: 364 GALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTE-H 422

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+  ++IL+       +++   + ++++  +GL PD  +Y +LI+GLC K    EA +
Sbjct: 423 KPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVK 482

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
              +M EKG LP  +TF  + + L++ + +            E+I    E +N +F P
Sbjct: 483 LLWQMEEKGCLPDSITFNVIIQNLLKENEIH-----------EAIQLLEEMRNRNFSP 529



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 150/334 (44%), Gaps = 51/334 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+SL+ G C+  R+  A  F  EM  RG+  +V TYN L++G+ R         F    
Sbjct: 183 VYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWF---- 238

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                  + M  RG  PD  +F+I++    +  +   +   L  M  KG  P + TY+++
Sbjct: 239 ------LNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTL 292

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G++EDA +L   +   G+  +  +YN     Y   +  + A +L+ +M+  GL
Sbjct: 293 MNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGL 352

Query: 181 CVPNMHSYNILI----------------------GMFMALN-------------RMDMVR 205
             P+  +YN LI                      G F+ L+              ++   
Sbjct: 353 -KPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAI 411

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +++  +K +   P+++ +++L+ G+C   K +EA + F E+ + GL P  + +  L  GL
Sbjct: 412 DLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGL 471

Query: 266 IQSDMLRTWRRLKKKLDE-----ESITFGSEFQN 294
               ML    +L  +++E     +SITF    QN
Sbjct: 472 CNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQN 505



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 127/276 (46%), Gaps = 46/276 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I   CK      A     EMI  G+ P+VV Y+ L++G+CR   L  +  F     
Sbjct: 149 YGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEF----- 203

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                F EM  RGI  DV +++ ++H  SRA   +     LN M ++G  P   T++ ++
Sbjct: 204 -----FKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILI 258

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++ +A+++L  M   G  P   TYN                        +GLC
Sbjct: 259 DGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLM---------------------NGLC 297

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
                    L+G      +++   +++  +   G+  ++ SY +LI+G C+ QK  EA +
Sbjct: 298 ---------LVG------QLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFR 342

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F EM  KGL P  VT+ TL   L QS  +RT ++L
Sbjct: 343 LFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKL 378



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 122/250 (48%), Gaps = 11/250 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CK  +ID A R   EM  +G++P+ VTYN L+  +C+             +R
Sbjct: 324 YNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGR----------VR 373

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+K+F EM+  G    ++++ ++L    +    + ++D    +K+    P +  +S ++
Sbjct: 374 TAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILL 433

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G++E+A +   E+ +NG+ P    YN        +   + A+KL  QM+E G C
Sbjct: 434 DGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKG-C 492

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+  ++N++I   +  N +    ++  +++     PD    +ML+       +W  A  
Sbjct: 493 LPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLASFDPQWHAALV 552

Query: 242 YFVEMIEKGL 251
                ++KG+
Sbjct: 553 SLPNALQKGV 562



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 130/265 (49%), Gaps = 20/265 (7%)

Query: 26  IERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85
           ++RG EP+ VT   L+ GV            E  I +A ++FDEM  +G+  D  ++ I+
Sbjct: 69  LKRGFEPDAVTVTTLVKGVW----------MENGIPDAVQLFDEMTEKGLFGDAKTYGIL 118

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICP-TVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           ++   +A +  L++ KL+  K KG C   V TY  ++  LC  G   +A ++  EM+  G
Sbjct: 119 INGLCKARKTGLAI-KLH-EKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAG 176

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           + P    Y+              A++ +++M+  G+   ++++YN LI     L+R  + 
Sbjct: 177 ILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISA-DVYTYNSLI---HGLSRAGLW 232

Query: 205 REI-W--NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +E+ W  N +   G  PD  ++T+LI GLC++ K  EA Q    M  KG  P  +T+ TL
Sbjct: 233 KEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTL 292

Query: 262 YRGLIQSDMLRTWRRLKKKLDEESI 286
             GL     L    +L + L +  I
Sbjct: 293 MNGLCLVGQLEDATKLFESLADRGI 317



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 66/126 (52%), Gaps = 11/126 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +++ L+ G C+  +++ A +   E+ + G+EP+ + YN+L+NG+C +  L          
Sbjct: 428 VFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLS--------- 478

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+  +M  +G  PD  +F++++    + ++   ++  L  M+ +   P  A  +S+
Sbjct: 479 -EAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAV-TSM 536

Query: 121 VKCLCS 126
           + CL S
Sbjct: 537 LLCLAS 542



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 2/147 (1%)

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
           ++ G  P A T     K          A++L+ +M E GL   +  +Y ILI       +
Sbjct: 69  LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGL-FGDAKTYGILINGLCKARK 127

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
             +  ++   +KG+  G D+ +Y M+I  LC+     EA   F EMI  G+LP  V + +
Sbjct: 128 TGLAIKLHEKMKGNCKG-DVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSS 186

Query: 261 LYRGLIQSDMLRTWRRLKKKLDEESIT 287
           L  GL +   L+      K+++   I+
Sbjct: 187 LMDGLCRFGRLKEALEFFKEMEGRGIS 213


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 147/317 (46%), Gaps = 45/317 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + SL+ G+CK   +D A + LG M+ +G+ PNVVTY+ L++G+C+      S++F     
Sbjct: 130 FNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCK------SQKF----L 179

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A++V +EM+  G+ PD  ++S ++H   +A + + +   L  M   G  P V  YSS++
Sbjct: 180 EAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSII 239

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG-- 179
              C  G++ +A++ L EM +    P   TYN              A  +  QM+E G  
Sbjct: 240 HAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDV 299

Query: 180 ---------------------------------LCVPNMHSYNILIGMFMALNRMDMVRE 206
                                             C P++ +Y  +I       R++    
Sbjct: 300 LPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEY 359

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +   +K +G  P++ +YT LI GLC+ +K  EA +   EM   G  P  VT+ T+  GL 
Sbjct: 360 LLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLC 419

Query: 267 QSDMLRTWRRLKKKLDE 283
            S  ++  ++L +++ +
Sbjct: 420 VSGRIKEAQQLVQRMKD 436



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 126/264 (47%), Gaps = 14/264 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T +I        +D A   L  M   G +PNVVTY  L+    R           K + 
Sbjct: 28  HTPIITAMANAGDLDGAMDHLRSM---GCDPNVVTYTALIAAFAR----------AKKLE 74

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ +EMR RG  P++ ++++++    +      + D +  M E G  P V T++S+V
Sbjct: 75  EAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLV 134

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G ++DA +LLG MV  G+ P+  TY+         +    A ++  +MK  G+ 
Sbjct: 135 DGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGV- 193

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y+ LI      ++++   ++   + GSG  PD+  Y+ +IH  C+  K  EA +
Sbjct: 194 TPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQK 253

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
              EM ++   P  VT+ T+  GL
Sbjct: 254 TLQEMRKQRKSPDVVTYNTVIDGL 277



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 129/275 (46%), Gaps = 18/275 (6%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           C    +  A   L EM   G  P+  T+  ++  +     L             +   D 
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDL-------------DGAMDH 47

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           +R  G +P+V +++ ++  ++RA + + ++  L  M+E+G  P + TY+ +V  LC    
Sbjct: 48  LRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSM 107

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           +  A++++ +M+  G  P+  T+N     +  R + + A KL   M   G+  PN+ +Y+
Sbjct: 108 VGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGM-RPNVVTYS 166

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            LI       +    +E+  ++K SG+ PD  +Y+ LIHGLC+  K +EA Q    M   
Sbjct: 167 ALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGS 226

Query: 250 GLLPQKVTFETLYRGLIQSDML----RTWRRLKKK 280
           G  P  V + ++     +S  L    +T + ++K+
Sbjct: 227 GCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQ 261



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 128/249 (51%), Gaps = 14/249 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+S+I+ +CK  ++  A++ L EM ++   P+VVTYN +++G+C+             I
Sbjct: 234 VYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGK----------I 283

Query: 61  RNAEKVFDEMRVRG-IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
             A+ + D+M+  G + PDV ++S V++   ++     +   L+ M + G  P V TY++
Sbjct: 284 AEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTT 343

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC CGR+E+AE LL  M R G  P+  TY          +  + A ++  +M+  G
Sbjct: 344 IIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAG 403

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG--SGLGPDLDSYTMLIHGLCEKQKWK 237
            C PN+ +YN ++       R+   +++   +K   +   PD  +Y  +++ L      +
Sbjct: 404 -CPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQ 462

Query: 238 EACQYFVEM 246
           EA Q   +M
Sbjct: 463 EAEQLLEQM 471



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 108/222 (48%), Gaps = 4/222 (1%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +  A ++ +EM+  G  PD  + + ++   + A     ++D L  M   G  P V TY++
Sbjct: 6   LHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNVVTYTA 62

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++       ++E+A +LL EM   G  P+  TYN              A  + ++M E G
Sbjct: 63  LIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGG 122

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              PN+ ++N L+  F     +D  R++   +   G+ P++ +Y+ LI GLC+ QK+ EA
Sbjct: 123 F-APNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEA 181

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            +   EM   G+ P   T+  L  GL ++D +    ++ +++
Sbjct: 182 KEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRM 223



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 91/190 (47%), Gaps = 4/190 (2%)

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           +L+ L  MK  G  P   T++ ++  + + G ++ A + L  M   G  P+  TY     
Sbjct: 9   ALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNVVTYTALIA 65

Query: 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
            +   K    AMKL  +M+E G C PN+ +YN+L+     L+ +   +++   +   G  
Sbjct: 66  AFARAKKLEEAMKLLEEMRERG-CPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFA 124

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           P++ ++  L+ G C++    +A +    M+ KG+ P  VT+  L  GL +S      + +
Sbjct: 125 PNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEV 184

Query: 278 KKKLDEESIT 287
            +++    +T
Sbjct: 185 LEEMKASGVT 194


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 147/285 (51%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI  +CK  ++D+A  FLG+M E G++  V  Y+ L++G C+   L          R
Sbjct: 393 YSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKL----------R 442

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +FDEM   G++P+V  ++ ++  Y +  +   +    + M  KGI P   T+++++
Sbjct: 443 AAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALI 502

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R+ +A +L GEMV   V P+  TYN   + +    +   A +L  +M E GL 
Sbjct: 503 SGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGL- 561

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+ ++Y  LI    +  R+   RE  ND++G     +   ++ L+HG C++ +  +A  
Sbjct: 562 VPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALD 621

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM+ +G+    V +  L  G+++    R+   L K++ ++ +
Sbjct: 622 ACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGL 666



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 135/263 (51%), Gaps = 12/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++L++G+CK  R+D A     EM+ RGV  ++V Y+VL+ G+ R          ++  R
Sbjct: 603 FSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILR----------QQDRR 652

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +   +  +M  +G+ PD   ++ ++   ++A   +++    + M  +G  P V TY++++
Sbjct: 653 SIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALI 712

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G ++ AE L  EM+ +   P+  TY CF        +   A++L+  + E  L 
Sbjct: 713 NGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFL- 771

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N  +YNILI  F  L R+    E+  ++  SG+ PD  SY+ +I+  C +   KEA +
Sbjct: 772 -ANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIK 830

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            +  M+ +G+ P  V +  L  G
Sbjct: 831 LWESMLNRGVNPDTVAYNFLIYG 853



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 139/318 (43%), Gaps = 46/318 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG-------------------------------- 29
           Y +L+ G CK+   +  E  + EMIE G                                
Sbjct: 288 YCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVK 347

Query: 30  ---VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
              V P++  YN L+N +C+   L            AE +F+ M  +G+ P+  ++SI++
Sbjct: 348 KFGVAPSLFVYNALINSMCKDGKLD----------EAESLFNNMGHKGLFPNDVTYSILI 397

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
             + +  +  ++L  L  M E GI  TV  YSS++   C  G++  A+ L  EM+ NG+ 
Sbjct: 398 DSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLK 457

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+   Y      Y    + + A +LY +M   G+  PN +++  LI      NRM    +
Sbjct: 458 PNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGIS-PNTYTFTALISGLCHANRMAEANK 516

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++ ++    + P+  +Y +LI G C++     A +   EM+EKGL+P   T+  L  GL 
Sbjct: 517 LFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLC 576

Query: 267 QSDMLRTWRRLKKKLDEE 284
            +  +   R     L  E
Sbjct: 577 STGRVSEAREFMNDLQGE 594



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 137/285 (48%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y   I G CK  R+  A      +  +G+  +V TY  L+ G+C+       E FE    
Sbjct: 253 YNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCK------VEEFEA--- 303

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             E++ +EM   G  P   + S ++    +      + D +N +K+ G+ P++  Y++++
Sbjct: 304 -GEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALI 362

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G++++AE L   M   G+ P+  TY+     +  R   + A+    +M E G+ 
Sbjct: 363 NSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGI- 421

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              ++ Y+ LI     L ++   + +++++  +GL P++  YT LI G C++ +   A +
Sbjct: 422 KATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFR 481

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            + EM  KG+ P   TF  L  GL  ++ +    +L  ++ E ++
Sbjct: 482 LYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNV 526



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 129/287 (44%), Gaps = 11/287 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+++   C++     A   +G M   G + +V TYNV + G+C+           + +
Sbjct: 217 VYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCK----------NQRV 266

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++ + +  +G+  DV ++  ++    +  + +   + +N M E G  P+ A  S++
Sbjct: 267 WEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNL 326

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  L   G I  A +L+ ++ + GV PS   YN            + A  L+  M   GL
Sbjct: 327 VDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGL 386

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  +Y+ILI  F    ++D+       +   G+   +  Y+ LI G C+  K + A 
Sbjct: 387 -FPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAK 445

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             F EMI  GL P  V + +L  G  +   L    RL  ++  + I+
Sbjct: 446 SLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGIS 492



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 137/277 (49%), Gaps = 23/277 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTSLI G+CK   +  A R   EM  +G+ PN  T+  L++G+C     H +   E   
Sbjct: 462 IYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLC-----HANRMAE--- 513

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+F EM    + P+  ++++++  + +      + + L+ M EKG+ P   TY  +
Sbjct: 514 --ANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPL 571

Query: 121 VKCLCSCGRIEDAEELLGEMV-----RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           +  LCS GR+ +A E + ++       N +C SA  +  + KE  GR D   A+   R+M
Sbjct: 572 ISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHG-YCKE--GRLD--DALDACREM 626

Query: 176 KEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
              G+ + ++  Y++LI G+    +R  ++ ++   +   GL PD   YT +I    +  
Sbjct: 627 LGRGVAM-DLVCYSVLIYGILRQQDRRSII-DLLKQMHDQGLRPDNVLYTTMIDANAKAG 684

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
             K A   +  M+ +G LP  VT+  L  GL +  ++
Sbjct: 685 NLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLM 721



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 121/275 (44%), Gaps = 11/275 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           + ++ G  +I +  MA     E++  G+ P+V  Y  ++  +C            K    
Sbjct: 184 SGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCEL----------KDFIR 233

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A +V   M   G +  V ++++ +    +  +   +++  N +  KG+   V TY ++V 
Sbjct: 234 AREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVL 293

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC     E  EE++ EM+  G  PS    +      R + +   A  L  ++K+ G+  
Sbjct: 294 GLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGV-A 352

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++  YN LI       ++D    ++N++   GL P+  +Y++LI   C++ K   A  +
Sbjct: 353 PSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHF 412

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
             +M E G+      + +L  G  +   LR  + L
Sbjct: 413 LGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSL 447



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 12/231 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT++I    K   + MA      M+  G  PNVVTY  L+NG+C+             +
Sbjct: 672 LYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIG----------LM 721

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE +  EM      P+  +++  L   +     + ++   + + E G      TY+ +
Sbjct: 722 DKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE-GFLANTVTYNIL 780

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C  GRI++A E+L  M+ +G+ P   +Y+    EY  R D   A+KL+  M   G+
Sbjct: 781 IRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGV 840

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
             P+  +YN LI        +    E+ +D+   G+ P+  +Y  LIHG C
Sbjct: 841 -NPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTC 890



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 99/247 (40%), Gaps = 34/247 (13%)

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           GI P + + S VL+   R  Q +++L   + +   G+ P V  Y++VV+ LC       A
Sbjct: 175 GILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRA 234

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL-----YRQMKED---------G 179
            E++G M  +G   S  TYN F +     +    A+++     Y+ ++ D         G
Sbjct: 235 REVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLG 294

Query: 180 LC--------------------VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
           LC                    VP+  + + L+        +    ++ N VK  G+ P 
Sbjct: 295 LCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPS 354

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
           L  Y  LI+ +C+  K  EA   F  M  KGL P  VT+  L     +   L        
Sbjct: 355 LFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLG 414

Query: 280 KLDEESI 286
           K+ E  I
Sbjct: 415 KMTEVGI 421



 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS 53
           Y  LIYG C    +  A     +M+ RGV+PN  TYN L++G C  +S+  +
Sbjct: 847 YNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSST 898


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 135/257 (52%), Gaps = 10/257 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G CK+  +  A   + + I +G  P++ TYN L++G C++  L           
Sbjct: 403 YNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLD---------- 452

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++ + M  +G+ PDV +++ +L+   +A + +  ++    M+EKG  P + TY+ +V
Sbjct: 453 SATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIV 512

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   ++ +A +LLGEM   G+ P   ++   F  +    D +GA +L+R+M++    
Sbjct: 513 DSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDV 572

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
                +YNI++  F     M+M  ++++ +K SG  PD  +Y ++I G C+     +  +
Sbjct: 573 CHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYK 632

Query: 242 YFVEMIEKGLLPQKVTF 258
           + +E +EK  +P   TF
Sbjct: 633 FLLENMEKRFIPSLTTF 649



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 140/286 (48%), Gaps = 2/286 (0%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L++  CK   +  +ER LG++++RGV PN+ T+N+ + G+CR  +L  + R  + + 
Sbjct: 219 FNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVE 278

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+   +M   G EPD  +++ ++  Y +    Q +   L     KG  P   TY S++
Sbjct: 279 -AEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLI 337

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G  + A  +  + +  G+ PS   YN   K    +     A++L  +M E+G C
Sbjct: 338 NGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENG-C 396

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+ +YN++I     +  +     + +D    G  PD+ +Y  LI G C++ K   A +
Sbjct: 397 LPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATE 456

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
               M  +G+ P  +T+ TL  GL ++        + K ++E+  T
Sbjct: 457 MVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCT 502



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 133/257 (51%), Gaps = 12/257 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK  ++D A   +  M  +G+ P+V+TYN LLNG+C+      + + E+ + 
Sbjct: 438 YNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCK------AGKSEEVM- 490

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++F  M  +G  P++ +++I++    +A +   ++D L  MK KG+ P V ++ ++ 
Sbjct: 491 ---EIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLF 547

Query: 122 KCLCSCGRIEDAEELLGEMVRN-GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              C  G I+ A +L   M +   VC +  TYN     +  + + N AMKL+  MK  G 
Sbjct: 548 TGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSG- 606

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P+ ++Y ++I  F  +  +    +   +       P L ++  +++ LC K K  EA 
Sbjct: 607 CDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAV 666

Query: 241 QYFVEMIEKGLLPQKVT 257
                M++KG++P+ V 
Sbjct: 667 GIIHLMLQKGIVPETVN 683



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 126/278 (45%), Gaps = 30/278 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT  I  +CK  R   A R L  M E G + N V Y  ++ G      L+ S   +    
Sbjct: 149 YTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAG------LYDSGEHD---- 198

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++FDEM  R + PDV +F+ ++HV  +      S   L  + ++G+CP + T++  V
Sbjct: 199 HARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFV 258

Query: 122 KCLCSCG---------RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR---KDANGAM 169
           + LC  G         R+ +AEE L +MV  G  P   TYN     Y  +   +DAN  +
Sbjct: 259 QGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVL 318

Query: 170 K--LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           K  +++  K      P+  +Y  LI  F      D    ++ D  G GL P +  Y  LI
Sbjct: 319 KDAVFKGFK------PDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLI 372

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            GL ++     A Q   EM E G LP   T+  +  GL
Sbjct: 373 KGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGL 410



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 126/297 (42%), Gaps = 55/297 (18%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           +P+V ++N ++N +      H           A KV+  MR RG++ DV +++I +  + 
Sbjct: 108 DPSVHSHNAIMN-ILVEFGYH---------NQAHKVYMRMRDRGVQSDVYTYTIRIKSFC 157

Query: 91  RAHQPQLSLDKLNFMKEKG-----------------------------------ICPTVA 115
           +  +P  +L  L  M E G                                   +CP V 
Sbjct: 158 KTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVV 217

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-------RGRKDAN-- 166
            ++ +V  LC  G + ++E LLG++++ GVCP+  T+N F +         R  +++   
Sbjct: 218 AFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVV 277

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            A +  R+M   G   P+  +YN +I  +     +     +  D    G  PD  +Y  L
Sbjct: 278 EAEEYLRKMVNGGF-EPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSL 336

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           I+G C+      A   F + + KGL P  V + TL +GL Q  ++    +L  ++ E
Sbjct: 337 INGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAE 393



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 87/196 (44%), Gaps = 1/196 (0%)

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           Y R  + Q ++D    M      P+V ++++++  L   G    A ++   M   GV   
Sbjct: 86  YGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSD 145

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             TY    K +        A++L R M E G C  N  +Y  ++         D  RE++
Sbjct: 146 VYTYTIRIKSFCKTARPYAALRLLRNMPELG-CDSNAVAYCTVVAGLYDSGEHDHARELF 204

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           +++    L PD+ ++  L+H LC+K    E+ +   +++++G+ P   TF    +GL + 
Sbjct: 205 DEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCRE 264

Query: 269 DMLRTWRRLKKKLDEE 284
             L    R  + ++ E
Sbjct: 265 GALDRAVRNSRVVEAE 280



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 7/179 (3%)

Query: 94  QPQLSLDKLNFMK-EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM---VRNGVCPSA 149
            P  +L+  N  K E G   T +TY  +V+ L   G  E+ E+LL EM   V N +   A
Sbjct: 19  DPLKALEMFNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSEMRENVNNALLEGA 78

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
             Y    K Y  +     A+  + +M     C P++HS+N ++ + +     +   +++ 
Sbjct: 79  --YIEAMKNYGRKGKVQEAVDTFERMDFYN-CDPSVHSHNAIMNILVEFGYHNQAHKVYM 135

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            ++  G+  D+ +YT+ I   C+  +   A +    M E G     V + T+  GL  S
Sbjct: 136 RMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDS 194


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 132/253 (52%), Gaps = 11/253 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L  G CK   +D A   L EM  +G++ N+ TYN ++NG+C+  +          I 
Sbjct: 323 YTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGN----------IL 372

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ +EM+  G+ PD  +++ ++  Y +  +   + + L  M ++G+ PTV T++ ++
Sbjct: 373 QAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLM 432

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++ED E LL  M+  G+ P+A TYN   K+Y  R +   + ++YR M   G+ 
Sbjct: 433 NGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGV- 491

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+ ++YNILI        M     +  ++          SY  LI G  +++K  EA Q
Sbjct: 492 VPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQ 551

Query: 242 YFVEMIEKGLLPQ 254
            F EM  +GL+  
Sbjct: 552 LFEEMRREGLVAS 564



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 140/287 (48%), Gaps = 26/287 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y+S+I   CK  ++   E+ L EM++RGV P+ V Y  L++G C+  +   + +      
Sbjct: 183 YSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEME 242

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  +  A+K+F+EM  +G EPD  +++ ++  Y +  + +
Sbjct: 243 AREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMK 302

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    N M + G+ P V TY+++   LC  G ++ A ELL EM R G+  +  TYN   
Sbjct: 303 KAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIV 362

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                  +   A+KL  +MKE GL  P+  +Y  L+  +     M   RE+  ++   GL
Sbjct: 363 NGLCKAGNILQAVKLMEEMKEAGLH-PDTITYTTLMDAYYKTGEMVKARELLREMLDRGL 421

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            P + ++ +L++GLC   K ++  +    M+EKG++P   T+ ++ +
Sbjct: 422 QPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMK 468



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 145/293 (49%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+CK+  +  A     +M++ G+ PNVVTY  L +G+C+   L           
Sbjct: 288 YTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELD---------- 337

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++  EM  +G++ ++++++ +++   +A     ++  +  MKE G+ P   TY++++
Sbjct: 338 TANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLM 397

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G +  A ELL EM+  G+ P+  T+N                +L + M E G+ 
Sbjct: 398 DAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGI- 456

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN  +YN ++  +   N M +  EI+  +   G+ PD ++Y +LI G C+ +  KEA  
Sbjct: 457 MPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWF 516

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
              EM+EK       ++  L +G  +   L   R+L +++  E +   +E  N
Sbjct: 517 LHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYN 569



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 137/282 (48%), Gaps = 12/282 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+C +  +    + + EM  +G++PN+ TY+ ++  +C+             + 
Sbjct: 148 YTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGK----------VV 197

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             EKV  EM  RG+ PD   ++ ++  + +    Q +    + M+ + I P    +S+++
Sbjct: 198 EGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALI 257

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G++ +A++L  EM++ G  P   TY      Y    +   A  L+ QM + GL 
Sbjct: 258 CGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGL- 316

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  L         +D   E+ +++   GL  ++ +Y  +++GLC+     +A +
Sbjct: 317 TPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVK 376

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS-DMLRTWRRLKKKLD 282
              EM E GL P  +T+ TL     ++ +M++    L++ LD
Sbjct: 377 LMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLD 418



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 129/267 (48%), Gaps = 11/267 (4%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           K + + M  +   E  + GV  N  +YN+L+N + R             IR A  +   M
Sbjct: 87  KRDMLGMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGK----------IREAHHLLMRM 136

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
             +G  PDV S++ ++  Y    + Q  +  +  M+ KG+ P + TYSS++  LC  G++
Sbjct: 137 EFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKV 196

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
            + E++L EM++ GV P    Y      +    +   A KL+ +M+   + VP+  +++ 
Sbjct: 197 VEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREI-VPDSIAFSA 255

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           LI       ++    +++N++   G  PD  +YT LI G C+  + K+A     +M++ G
Sbjct: 256 LICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIG 315

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWRRL 277
           L P  VT+  L  GL +S  L T   L
Sbjct: 316 LTPNVVTYTALADGLCKSGELDTANEL 342



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 25/179 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK--- 58
           YT+L+  + K   +  A   L EM++RG++P VVT+NVL+NG+C    L   ER  K   
Sbjct: 393 YTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWML 452

Query: 59  ------------------TIRN----AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                              IRN    + +++  M  +G+ PD  +++I++  + +A   +
Sbjct: 453 EKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMK 512

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
            +      M EK    T ++Y++++K      ++ +A +L  EM R G+  SAE YN F
Sbjct: 513 EAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLF 571


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 143/302 (47%), Gaps = 11/302 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+C+I  ++ A     +M  R + P+ +TYN L+NG      L   ER    I
Sbjct: 365 IYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALING------LGKVER----I 414

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +  EM   G+ P V +F+ ++  Y RA Q +     L+ M+EKG+ P V +Y S+
Sbjct: 415 TEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSI 474

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V   C  G+I +A  +L +M    V P A+ YN     Y      + A  L  +MK  G+
Sbjct: 475 VNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGV 534

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +YN+LI      +++    E+ + ++  GL PD+ SY  LI   C +     A 
Sbjct: 535 -PPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRAL 593

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
           +   EM + G+ P   T+  L+  L  +  +     L +++ ++ +   S   N     Y
Sbjct: 594 ELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAY 653

Query: 301 RR 302
            +
Sbjct: 654 AK 655



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 129/260 (49%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G  K   ++   R   +M+  G++PNV+TYNVLL+G+CR      + R  +T  
Sbjct: 226 YNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCR------AGRMGET-- 277

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               V DEM  R + PD  ++SI+   +SR    Q  L       +KG+     T S ++
Sbjct: 278 --AAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILL 335

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+I  AEE+L  +V +G+  +   YN     Y    D  GA  +++QMK   L 
Sbjct: 336 NGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSR-LI 394

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN LI     + R+    ++  +++ +G+ P ++++  LI       + ++   
Sbjct: 395 RPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFI 454

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              +M EKGL P  V++ ++
Sbjct: 455 ILSDMQEKGLKPNVVSYGSI 474



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 118/271 (43%), Gaps = 11/271 (4%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
           PN  +YNV++ G+ +            T  +A K+FDEM  + + P+  +++ ++  + +
Sbjct: 186 PNAFSYNVVIAGLWKAG----------TDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIK 235

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
               +      + M   G+ P V TY+ ++  LC  GR+ +   +L EM    + P   T
Sbjct: 236 KGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFT 295

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           Y+  F  +    D+   + L+ +  + G+ +   ++ +IL+       ++    E+   +
Sbjct: 296 YSILFDGHSRTGDSQTMLSLFEESVKKGVKI-GAYTCSILLNGLCKDGKISKAEEVLQTL 354

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
             SGL      Y  LI+G C+    + A   F +M  + + P  +T+  L  GL + + +
Sbjct: 355 VNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERI 414

Query: 272 RTWRRLKKKLDEESITFGSEFQNYHFKPYRR 302
                L  ++++  +    E  N     Y R
Sbjct: 415 TEAHDLVIEMEKNGVNPSVETFNTLIDAYGR 445



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 87/187 (46%), Gaps = 10/187 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I  + +    D A     +M   GV P++VTYN+L+ G+C+++           I
Sbjct: 505 VYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQ----------I 554

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE++ D +R  G+ PDV S++ ++           +L+    M + GI P+  TY  +
Sbjct: 555 SEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRML 614

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              L   GR+ + E L  +M+   V P +  YN     Y    + +    L ++M + G+
Sbjct: 615 FSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDKGI 674

Query: 181 CVPNMHS 187
            V +  S
Sbjct: 675 AVGDYTS 681



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 8/186 (4%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV-CPSAETYNCFFKE-YRGRKDANGAM 169
           P   T++  V+     G +++A  +L  M  +G   P+A +YN      ++   D + A+
Sbjct: 150 PDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCD-AV 208

Query: 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
           KL+ +M E  + VPN  +YN +I   +    ++    +W+ +   GL P++ +Y +L+ G
Sbjct: 209 KLFDEMPEKAV-VPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSG 267

Query: 230 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
           LC   +  E      EM  + ++P   T+  L+ G  ++   +T   L     EES+  G
Sbjct: 268 LCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLF----EESVKKG 323

Query: 290 SEFQNY 295
            +   Y
Sbjct: 324 VKIGAY 329


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 153/286 (53%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI    K  ++  A +    MI++G  PN+VTYN LLNG+C    LH        + 
Sbjct: 187 FTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLC----LHHQ------MD 236

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F+ M  RGI+ DV S++ +++ Y  + + + ++     M+ + + P++ TY+ ++
Sbjct: 237 HAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILL 296

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K L   GRI  A+EL   M   G  PS +TY               A+ ++R +K     
Sbjct: 297 KALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKY- 355

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  Y+ILIG      R +   EI++++   GL P++ +Y ++I+GLC++ K  EA +
Sbjct: 356 KPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAER 415

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            FV+M E G    +++F  + RG +Q + ++      K++ E++ +
Sbjct: 416 LFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFS 461



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 148/318 (46%), Gaps = 46/318 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+SLI G C++ ++  A     EM+ +G++ NV+TYN L++  CR              
Sbjct: 116 VYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFG----------LW 165

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A + F +M   GI PDV +F+ ++   S+  + Q +      M ++G  P + TY+S+
Sbjct: 166 KEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSL 225

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   +++ A  L   MV  G+     +YN     Y        AM L+R+M+ + L
Sbjct: 226 LNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEEL 285

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC--------- 231
             P++ +Y IL+       R+   +E++N+++  G  P LD+YT+L+ GLC         
Sbjct: 286 -TPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAI 344

Query: 232 --------------------------EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
                                     + ++W+ A + F E+   GL+P  VT+  +  GL
Sbjct: 345 DVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGL 404

Query: 266 IQSDMLRTWRRLKKKLDE 283
            +   L    RL  +++E
Sbjct: 405 CKEGKLLEAERLFVQMEE 422



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 128/297 (43%), Gaps = 46/297 (15%)

Query: 26  IERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85
           ++ G +PN+VT + L+ G+C          FE  + +A ++FD+M   G + D+  +  +
Sbjct: 1   MKSGYQPNLVTVSTLVKGMC----------FEGKVMDALELFDKMTRSGFQGDILLYGYL 50

Query: 86  LHVYSRAHQPQ--------------------------------LSLDKLNFMKEK---GI 110
           ++   +  Q +                                L++  L   +E    GI
Sbjct: 51  INALRKTRQARRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGI 110

Query: 111 CPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMK 170
           CP V  YSS++  LC  G++ +A  L  EMV  G+  +  TYN              A +
Sbjct: 111 CPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATR 170

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
            + QM  +G+ +P++ ++  LI       ++    +I+  +   G  P++ +Y  L++GL
Sbjct: 171 TFSQMVGEGI-LPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGL 229

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           C   +   A + F  M+E+G+    +++ TL  G   S        L +K+  E +T
Sbjct: 230 CLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELT 286



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 130/300 (43%), Gaps = 26/300 (8%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV-----CRRA-SLHPSERF 56
           ++L+ G C   ++  A     +M   G + +++ Y  L+N +      RRA  LH     
Sbjct: 13  STLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVELHRRMLS 72

Query: 57  EKTIRN-------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
           E    N                     K+F EM   GI P+V  +S +++   R  + + 
Sbjct: 73  EICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLRE 132

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           +++  + M  +GI   V TY+S++   C  G  ++A     +MV  G+ P   T+     
Sbjct: 133 AVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLID 192

Query: 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
               +     A K++  M + G   PN+ +YN L+      ++MD    ++  +   G+ 
Sbjct: 193 HLSKKGKVQEAYKIFELMIKQGEA-PNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIK 251

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            D+ SY  LI+G C   K +EA   F +M  + L P   T+  L + L Q+  +RT + L
Sbjct: 252 IDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKEL 311



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 131/285 (45%), Gaps = 31/285 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------SLHPSER 55
           Y SL+ G C  +++D A R    M+ERG++ +V++YN L+NG C         +L    +
Sbjct: 222 YNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQ 281

Query: 56  FEKT-------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +E+                    IR A+++F+ M++ G  P + +++++L    +    +
Sbjct: 282 YEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIE 341

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++D    +K     P++  YS ++  +    R E A E+  E+   G+ P+  TYN   
Sbjct: 342 EAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMI 401

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      A +L+ QM+E G C  +  S+N +I  F+  N++    E    ++    
Sbjct: 402 NGLCKEGKLLEAERLFVQMEESG-CEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNF 460

Query: 217 GPDLDSYTMLIHGL--CEKQKWKEACQYFVEMIEKGLLP--QKVT 257
            P+ DS T+++  L   + Q  +    +  E+++K  L   Q VT
Sbjct: 461 SPN-DSVTLMLVNLYAADAQSSELPNNFLHELVQKKTLKTQQDVT 504



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 10/112 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+ LI G  +  R + A     E+   G+ PN+VTYN+++NG+C+   L  +ER     
Sbjct: 361 IYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAER----- 415

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP 112
                +F +M   G E D  SF+ ++  + + +Q Q +++ L  M+EK   P
Sbjct: 416 -----LFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSP 462


>gi|297807523|ref|XP_002871645.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317482|gb|EFH47904.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 524

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 145/275 (52%), Gaps = 26/275 (9%)

Query: 2   YTSLIYGWCK-INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +  ++ GWC  I     AER   EM   GV+ +VV+Y+ +++   +  SL+         
Sbjct: 218 FNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLN--------- 268

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE-KGICPTVATYSS 119
               K+FD M+   IEPD   ++ V+H  ++A     + + +  M+E KG+ P V TY+S
Sbjct: 269 -KVLKLFDRMKKESIEPDRKVYNAVIHALAKASFVSEARNLMKTMEEEKGMEPNVVTYNS 327

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++K LC   + E+A+++  EM+  G+ P+  TY+ F +  R  ++     +L  +M++ G
Sbjct: 328 LIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMRILRTGEEV---FELLAKMRKMG 384

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C P + +Y +LI         D V  +WN++K  G+GPDL SY ++IHGL    K +EA
Sbjct: 385 -CQPTVDTYIMLIRKLCRWRDFDNVLLLWNEMKEKGVGPDLSSYIVMIHGLFLNGKIEEA 443

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTW 274
             Y+ EM EKG+ P +             DM+++W
Sbjct: 444 YGYYKEMKEKGMRPNENV----------EDMIQSW 468



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 97/245 (39%), Gaps = 48/245 (19%)

Query: 63  AEKVFDEMRVRGIEPDVT---SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           A  + DEMR     P +    +  I++  Y   H    +++  +  K   +   +  + S
Sbjct: 129 AWTLIDEMR--KFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMGIDDFQS 186

Query: 120 VVKCLCSCGRIEDAEELL-----------------------------------GEMVRNG 144
           ++  LC    + DAE L+                                    EM   G
Sbjct: 187 LLSALCRYKNVSDAEHLIFCNKDTYPFDAKSFNIVLNGWCNVIGSPREAERVWMEMGNVG 246

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           V     +Y+     Y      N  +KL+ +MK++ +  P+   YN +I    AL +   V
Sbjct: 247 VKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKESI-EPDRKVYNAVI---HALAKASFV 302

Query: 205 REIWNDVKG----SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
            E  N +K      G+ P++ +Y  LI  LC+ +K +EA Q F EM+EKGL P   T+  
Sbjct: 303 SEARNLMKTMEEEKGMEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHA 362

Query: 261 LYRGL 265
             R L
Sbjct: 363 FMRIL 367


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 130/257 (50%), Gaps = 10/257 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G CK+  +  A   + + I +G  P+V T+N L++G C++       + E TI+
Sbjct: 429 YNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQL------KMETTIQ 482

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + ++M   G+ PDV +++ VL+  S+A + +  ++    M EKG  P   TY+ + 
Sbjct: 483 ----ILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILT 538

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  G++ +A +L+ E++  G+ P   ++      +    D  GA +L+R+M E    
Sbjct: 539 ESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKV 598

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
                +YNI+I  F     + M  +++ ++   G  PD  +Y ++I G C         +
Sbjct: 599 SHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYK 658

Query: 242 YFVEMIEKGLLPQKVTF 258
           + +EMIEKG +P   TF
Sbjct: 659 FLLEMIEKGFIPSLTTF 675



 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 139/286 (48%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK + +  AE++L +++  G+EP+  TYN L++G C+   L          +
Sbjct: 289 YNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGML----------Q 338

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NAEK+      +G  PD  ++  +++   +  +   +L   N    KG+ PTV  Y+ ++
Sbjct: 339 NAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLI 398

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC  G I  A +++ EM  NG      TYN            + A  L       G  
Sbjct: 399 KGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGY- 457

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++ ++N LI  +    +M+   +I N +   G+ PD+ +Y  +++GL +  K ++  +
Sbjct: 458 VPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLME 517

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            F  M+EKG +P K+T+  L   L ++  +     L  ++  + IT
Sbjct: 518 TFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGIT 563



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 131/283 (46%), Gaps = 13/283 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T  I  +C+  R   A R L  M+ +G + N V Y  ++ G            +E+  R
Sbjct: 149 FTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGF-----------YEENYR 197

Query: 62  -NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++F++M   GI PDV++F+ +LH   +  + Q S   LN + +KG+C  + T++  
Sbjct: 198 VEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIF 257

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++ LC  G +  A  +L  ++R G+ P   TYN          +   A K   ++   GL
Sbjct: 258 IQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGL 317

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  +YN LI  +  +  +    +I       G  PD  +Y  LI+GLC+  +   A 
Sbjct: 318 -EPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRAL 376

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
             F   + KGL P  + +  L +GL Q  ++    ++  ++ E
Sbjct: 377 ALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSE 419



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 114/247 (46%), Gaps = 11/247 (4%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           EP+V++YN ++N +                + A KVF  M+  GI PDV +F+I +  + 
Sbjct: 108 EPSVLSYNAIMNILVESGYF----------KQAHKVFLRMKNVGIVPDVYTFTIRIKSFC 157

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
           R  +P  +L  LN M  +G       Y +VV          +A EL  +M+R G+ P   
Sbjct: 158 RTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVS 217

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           T+N        + +   + +L  ++ + G+C  N+ ++NI I        +     + + 
Sbjct: 218 TFNKLLHTLCKKGEVQESERLLNKVLKKGMC-SNLFTFNIFIQGLCRKGMLSGAMSMLDS 276

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           V   GL PD+ +Y  LI GLC+     EA +Y  +++  GL P   T+ TL  G  +  M
Sbjct: 277 VIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGM 336

Query: 271 LRTWRRL 277
           L+   ++
Sbjct: 337 LQNAEKI 343



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 92/199 (46%), Gaps = 1/199 (0%)

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           Y R  + Q ++D    M      P+V +Y++++  L   G  + A ++   M   G+ P 
Sbjct: 86  YGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPD 145

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             T+    K +   K  + A++L   M   G C  N  +Y  ++  F   N      E++
Sbjct: 146 VYTFTIRIKSFCRTKRPHSALRLLNNMVSQG-CQLNAVAYCTVVAGFYEENYRVEAYELF 204

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           ND+   G+ PD+ ++  L+H LC+K + +E+ +   ++++KG+     TF    +GL + 
Sbjct: 205 NDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRK 264

Query: 269 DMLRTWRRLKKKLDEESIT 287
            ML     +   +  E +T
Sbjct: 265 GMLSGAMSMLDSVIREGLT 283



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 26/172 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           Y  L    CK  +++ A   + E++ +G+ P+ V++  +++G      L           
Sbjct: 534 YNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMG 593

Query: 51  ------HPSERFEKTIRN---------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                 H +  +   I            EK+F EM   G  PD  ++ +++  +      
Sbjct: 594 EQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNT 653

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
                 L  M EKG  P++ T+  V+ CLC   R+ +A +++  MV NG+ P
Sbjct: 654 DSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVP 705


>gi|224111364|ref|XP_002315827.1| predicted protein [Populus trichocarpa]
 gi|222864867|gb|EEF01998.1| predicted protein [Populus trichocarpa]
          Length = 472

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 136/283 (48%), Gaps = 14/283 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  + +GWC++       + L EMI+ G  P+  TY   ++  CR             + 
Sbjct: 175 YNVMFFGWCRVRNPTRGMKVLEEMIQLGHTPDSFTYITAIDAFCRAG----------MVN 224

Query: 62  NAEKVFDEMRVRGI---EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A ++F+ MR +G     P   +++I++    R ++       L  M   G  P V+T+ 
Sbjct: 225 EAAELFEFMRTKGSTMSSPTAKTYAIMIGALVRNNRMDECFKLLEDMINSGCLPDVSTFK 284

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            +++ +CS G+I++A   L EM   G  P   TYNCF K     K++  A++LY +M E 
Sbjct: 285 ELIEGMCSAGKIDEAYRFLQEMGNKGYPPDIVTYNCFLKVLCENKNSEEALRLYERMIEA 344

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G C P++ ++N+LI MF  +   D   E W ++   G   D+D+Y ++I GL    K ++
Sbjct: 345 G-CFPSVQTHNMLISMFFEMGDPDGAFETWYEMDKRGCAQDVDTYIVMIDGLFGCNKVED 403

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           AC    +++ KG+      F++    L     +R   RL + +
Sbjct: 404 ACFLIEDIVNKGMKLPYQKFDSFLMQLSVIGNIRAIHRLSEHM 446



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 90/207 (43%), Gaps = 42/207 (20%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF-------KEYRGRK- 163
           P +  ++ ++  LC C   EDAE L  + V+N V P A TYN  F          RG K 
Sbjct: 136 PEINAFNLLLDALCKCCLAEDAEGLF-KRVKNKVKPDANTYNVMFFGWCRVRNPTRGMKV 194

Query: 164 --------------------DA-------NGAMKLYRQMKEDG--LCVPNMHSYNILIGM 194
                               DA       N A +L+  M+  G  +  P   +Y I+IG 
Sbjct: 195 LEEMIQLGHTPDSFTYITAIDAFCRAGMVNEAAELFEFMRTKGSTMSSPTAKTYAIMIGA 254

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
            +  NRMD   ++  D+  SG  PD+ ++  LI G+C   K  EA ++  EM  KG  P 
Sbjct: 255 LVRNNRMDECFKLLEDMINSGCLPDVSTFKELIEGMCSAGKIDEAYRFLQEMGNKGYPPD 314

Query: 255 KVTFETLYRGLIQS----DMLRTWRRL 277
            VT+    + L ++    + LR + R+
Sbjct: 315 IVTYNCFLKVLCENKNSEEALRLYERM 341


>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 754

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 147/286 (51%), Gaps = 10/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI  + +  + +++   L  M +  V P+++TYN ++N  C R  L+    +E  + 
Sbjct: 180 YTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINS-CARGGLN----WEGLL- 233

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F EMR  GI+PD+ +++ +L+  +       +      M E G+ P + TY ++V
Sbjct: 234 ---SLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLV 290

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +      ++E   ELL EM  +G  P   +YN   + Y  + D   AM ++RQM+E   C
Sbjct: 291 ETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQE-ARC 349

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN  +Y++L+ ++    R D VRE++ ++K S   PD+ +Y +LI    E   +KE   
Sbjct: 350 VPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVT 409

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            F +M+E+ + P   T+E L     +  +    +++   +DE+ I 
Sbjct: 410 LFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIV 455



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 14/233 (6%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           +PN   Y ++++ + R   L  S           ++F+EM   G+   V S++ +++ Y 
Sbjct: 139 KPNEHIYTIIISLLGREGLLEKST----------EIFEEMPTHGVPRSVFSYTALINSYG 188

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI--EDAEELLGEMVRNGVCPS 148
           R  Q ++SL+ L  MK++ + P++ TY++V+   C+ G +  E    L  EM   G+ P 
Sbjct: 189 RHGQYEVSLELLERMKKEKVTPSILTYNTVINS-CARGGLNWEGLLSLFAEMRHEGIQPD 247

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             TYN        R   + A  ++R M E G+ VP++ +Y  L+  F  LN+++ V E+ 
Sbjct: 248 IITYNTLLNACANRGLGDEAEMVFRTMNEGGM-VPDITTYRNLVETFGKLNKLEKVSELL 306

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            +++ SG  PD+ SY +L+     K   + A   F +M E   +P  VT+  L
Sbjct: 307 KEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSML 359



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 126/285 (44%), Gaps = 26/285 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+  + K+N+++     L EM   G  P++ +YNVLL     +  +  +    + ++
Sbjct: 286 YRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQ 345

Query: 62  NAE-------------------------KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            A                          ++F EM+V   EPDV ++++++ V+      +
Sbjct: 346 EARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFK 405

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
             +   + M E+ + P + TY  ++      G  EDA+++L  M   G+ PS + Y    
Sbjct: 406 EVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVI 465

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           + Y        A+ ++  M E G   P + +YN LI MF           I   +  SG+
Sbjct: 466 EAYGQAASYEEALVMFNTMNEMG-SKPTVETYNSLINMFARGGLYKESEAIMWKMGESGV 524

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
             D DS+  +I G  +  +++EA + +VE+ +    P + TFE +
Sbjct: 525 ARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAV 569



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 125/274 (45%), Gaps = 16/274 (5%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           +M+E  VEPN+ TY  L+   C +  LH          +A+K+   M  +GI P   +++
Sbjct: 413 DMVEENVEPNMGTYEGLIYA-CGKGGLH---------EDAKKILLHMDEKGIVPSTKAYT 462

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            V+  Y +A   + +L   N M E G  PTV TY+S++      G  +++E ++ +M  +
Sbjct: 463 GVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGES 522

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           GV    +++N   + YR       A+K Y ++ E     P+  ++  ++ ++     +D 
Sbjct: 523 GVARDRDSFNGVIEGYRQGGQFEEAIKTYVEL-EKARFQPDERTFEAVLSVYCTAGLVDE 581

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             E + +++ SG+ P +  Y M+I       +W +A +   EM+   +         + +
Sbjct: 582 SEEQFREIRASGILPSVMCYCMMIAVYARSNRWDDAYEVLDEMVTNKVSNIHQVVGKMMK 641

Query: 264 GLIQSDMLRTWRRLK---KKLDEESITFGSEFQN 294
           G    D    W+ ++    KL+ E    G  F N
Sbjct: 642 G--DYDDYSNWQMVEYVFDKLNSEGCGLGMRFYN 673



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 102/266 (38%), Gaps = 35/266 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSE------- 54
           YT +I  + +    + A      M E G +P V TYN L+N   R      SE       
Sbjct: 461 YTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMG 520

Query: 55  ----------------------RFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92
                                 +FE+ I    K + E+     +PD  +F  VL VY  A
Sbjct: 521 ESGVARDRDSFNGVIEGYRQGGQFEEAI----KTYVELEKARFQPDERTFEAVLSVYCTA 576

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
                S ++   ++  GI P+V  Y  ++       R +DA E+L EMV N V    +  
Sbjct: 577 GLVDESEEQFREIRASGILPSVMCYCMMIAVYARSNRWDDAYEVLDEMVTNKVSNIHQVV 636

Query: 153 NCFFK-EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
               K +Y    +      ++ ++  +G C   M  YN L+     L + +    + ++ 
Sbjct: 637 GKMMKGDYDDYSNWQMVEYVFDKLNSEG-CGLGMRFYNTLLEALWWLGQKERAARVLSEA 695

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWK 237
              GL P+L   + L+  +   + W+
Sbjct: 696 IKRGLFPELFRKSKLVWSVDVHRMWE 721



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 7/173 (4%)

Query: 90  SRAHQPQLSLDKLNFMKEKG-ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           +RA   +L L   + + EKG     V T  + +  L   G I    E+    +      S
Sbjct: 52  ARAKTKELVLGNPSVVVEKGKYSYDVETLINKLSSLPPRGSIARCLEIFKNKL------S 105

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
              +   FKE+  R D   +++L++ M+    C PN H Y I+I +      ++   EI+
Sbjct: 106 LNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKSTEIF 165

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            ++   G+   + SYT LI+      +++ + +    M ++ + P  +T+ T+
Sbjct: 166 EEMPTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTV 218


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 143/288 (49%), Gaps = 26/288 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y S I   CK  RI+ A   L +++E G+ PN VTYN L++G C +  L  +  +     
Sbjct: 290 YNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMM 349

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               EK I  AE +  EMR +G+EPDV +++I ++ Y R    +
Sbjct: 350 NRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAK 409

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   + M EK I PTV TY+S++       R+ +AEE   + ++ G+ P    +N   
Sbjct: 410 KALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALI 469

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +    + + A +L ++M ++   VP+  ++N L+  +    +++  +++ +++K  G+
Sbjct: 470 DGHCVNGNIDRAFQLLKEM-DNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGI 528

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            PD  SY  LI G  ++   K+A + F EM+  G  P  +T+  L +G
Sbjct: 529 KPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQG 576



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 128/247 (51%), Gaps = 11/247 (4%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           I MA     EM++  ++ ++VT+N+++N +CR          E   + A+     M V G
Sbjct: 198 IKMAWFVYEEMVKMNIKSSIVTFNIMINILCR----------EGKWKKAKDFIGHMEVYG 247

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           ++P+V +++ V++ Y    + + +      MK+K + P   TY+S +  LC   RIE+A 
Sbjct: 248 VKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEAS 307

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
            +L +++ +G+ P+A TYN        + D + A     +M   G+ V ++ +YN+LI  
Sbjct: 308 GVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGI-VASVFTYNLLIHA 366

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                R++   ++  +++  G+ PD+ +Y + I+G C     K+A   F EM+EK + P 
Sbjct: 367 LFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPT 426

Query: 255 KVTFETL 261
             T+ +L
Sbjct: 427 VETYTSL 433



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 149/324 (45%), Gaps = 31/324 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           Y ++I G+C   + + A +    M ++ ++P+  TYN  ++ +C+               
Sbjct: 255 YNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLL 314

Query: 47  RASLHPSERFEKTIRNA-------EKVF---DEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            + L P+      + +        +K F   DEM  RGI   V ++++++H      + +
Sbjct: 315 ESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIE 374

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + D +  M+EKG+ P V TY+  +   C CG  + A  L  EMV   + P+ ETY    
Sbjct: 375 EAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLI 434

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +  R   + A + +++  ++G+ +P++  +N LI        +D   ++  ++  + +
Sbjct: 435 DVFGKRNRMSEAEEKFKKSIKEGM-LPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKV 493

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLR 272
            PD  ++  L+ G C ++K +EA +   EM E+G+ P  +++ TL  G  +     D L 
Sbjct: 494 VPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALE 553

Query: 273 TWRR-LKKKLDEESITFGSEFQNY 295
            +   L    D   +T+ +  Q Y
Sbjct: 554 VFDEMLSLGFDPTLLTYNALIQGY 577



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 117/254 (46%), Gaps = 26/254 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR-----RASLHPSERF 56
           Y  LI+      RI+ AE  + EM E+GVEP+VVTYN+ +NG CR     +A     E  
Sbjct: 360 YNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMV 419

Query: 57  EKTIR--------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           EK IR                     AE+ F +    G+ PD+  F+ ++  +       
Sbjct: 420 EKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNID 479

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L  M    + P   T++++++  C   ++E+A++LL EM   G+ P   +YN   
Sbjct: 480 RAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLI 539

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y  R D   A++++ +M   G   P + +YN LI  +  +   D   E+  +++  G+
Sbjct: 540 SGYSKRGDMKDALEVFDEMLSLGF-DPTLLTYNALIQGYSKIGEADHAEELLREMQSKGI 598

Query: 217 GPDLDSYTMLIHGL 230
            PD  +Y  +I  +
Sbjct: 599 TPDDSTYLYVIEAM 612



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 10/152 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+ +LI G C    ID A + L EM    V P+ VT+N L+ G CR          E+ +
Sbjct: 464 MFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCR----------ERKV 513

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+K+ DEM+ RGI+PD  S++ ++  YS+    + +L+  + M   G  PT+ TY+++
Sbjct: 514 EEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNAL 573

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
           ++     G  + AEELL EM   G+ P   TY
Sbjct: 574 IQGYSKIGEADHAEELLREMQSKGITPDDSTY 605



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 107/256 (41%), Gaps = 45/256 (17%)

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICP----------------------------- 112
           F ++L  Y +  +P  +L+ LN MKE  I P                             
Sbjct: 150 FDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEEMV 209

Query: 113 ------TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
                 ++ T++ ++  LC  G+ + A++ +G M   GV P+  TYN     Y  R    
Sbjct: 210 KMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFE 269

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            A K+++ MK+  L  P+ ++YN  I       R++    +   +  SGL P+  +Y  L
Sbjct: 270 AASKIFKTMKDKNL-KPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNAL 328

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI-------QSDMLRTWRRLKK 279
           I G C K    +A  Y  EM+ +G++    T+  L   L          DM++  R  +K
Sbjct: 329 IDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMR--EK 386

Query: 280 KLDEESITFGSEFQNY 295
            ++ + +T+  +   Y
Sbjct: 387 GVEPDVVTYNIQINGY 402


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 145/307 (47%), Gaps = 26/307 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y +LIYG CK ++   AE +LG+M+  G+EP+  TYN L+ G C+   +  +ER      
Sbjct: 289 YNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAV 348

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E     A  +F+E   +GI+P+V  ++ ++   S      
Sbjct: 349 FNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMIL 408

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    N M EKG+ P V T++ +V  LC  G + DA+ L+  M+  G  P   T+N   
Sbjct: 409 EAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILI 468

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y  +     A+++   M ++G+  P++++YN L+      ++ + V E +  +   G 
Sbjct: 469 HGYSTQLKMENALEILDVMLDNGV-DPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGC 527

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+L ++ +L+  LC  +K  EA     EM  K + P  VTF TL  G  ++  L     
Sbjct: 528 APNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYT 587

Query: 277 LKKKLDE 283
           L +K++E
Sbjct: 588 LFRKMEE 594



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 134/293 (45%), Gaps = 45/293 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G      I  A +   EM E+G+ P V T+N+L+NG+C+             +
Sbjct: 393 LYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGC----------V 442

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A+ +   M  +G  PD+ +F+I++H YS   + + +L+ L+ M + G+ P V TY+S+
Sbjct: 443 SDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSL 502

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRK---------------- 163
           +  LC   + ED  E    MV  G  P+  T+N   +   R RK                
Sbjct: 503 LNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSV 562

Query: 164 ------------------DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
                             D +GA  L+R+M+E      +  +YNI+I  F     + M  
Sbjct: 563 NPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAE 622

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
           +++ ++    LGPD  +Y +++ G C+        ++ +EM+E G +P   T 
Sbjct: 623 KLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTL 675



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 120/247 (48%), Gaps = 11/247 (4%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           EP V +YN ++      + L  S  F++    A KV+  MR RGI PDV SF+I +  + 
Sbjct: 108 EPTVFSYNAIM------SVLVDSGYFDQ----AHKVYMRMRDRGITPDVYSFTIRMKSFC 157

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
           +  +P  +L  LN M  +G    V  Y +VV          +  EL G+M+ +GV     
Sbjct: 158 KTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLS 217

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           T+N   +    + D     KL  ++ + G+ +PN+ +YN+ I        +D    +   
Sbjct: 218 TFNKLLRVLCKKGDVKECEKLLDKVIKRGV-LPNLFTYNLFIQGLCQRGELDGAVRMVGC 276

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           +   G  PD+ +Y  LI+GLC+  K++EA  Y  +M+ +GL P   T+ TL  G  +  M
Sbjct: 277 LIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGM 336

Query: 271 LRTWRRL 277
           ++   R+
Sbjct: 337 VQLAERI 343



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 129/267 (48%), Gaps = 17/267 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G+ + N         G+M+  GV   + T+N LL  +C++            ++
Sbjct: 184 YCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGD----------VK 233

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             EK+ D++  RG+ P++ ++++ +    +  +   ++  +  + E+G  P V TY++++
Sbjct: 234 ECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLI 293

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
             LC   + ++AE  LG+MV  G+ P + TYN     Y       G ++L  ++  D + 
Sbjct: 294 YGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYC----KGGMVQLAERIVGDAVF 349

Query: 181 --CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
              VP+  +Y  LI         +    ++N+  G G+ P++  Y  LI GL  +    E
Sbjct: 350 NGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILE 409

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGL 265
           A Q   EM EKGL+P+  TF  L  GL
Sbjct: 410 AAQLANEMSEKGLIPEVQTFNILVNGL 436



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 26/179 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEK-- 58
           +  L+   C+  ++D A   L EM  + V P+ VT+  L++G C+   L  +   F K  
Sbjct: 534 FNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKME 593

Query: 59  -----------------------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                   +  AEK+F EM  R + PD  ++ +++  + +    
Sbjct: 594 EAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNV 653

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
            L    L  M E G  P++ T   V+ CLC   R+ +A  ++  MV+ G+ P A    C
Sbjct: 654 NLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAVNTIC 712



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 3/178 (1%)

Query: 94  QPQLSLDKLNFM-KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN-GVCPSAET 151
            P  +L+  N M KE G   T++TY SV++ L   G+ E  EE+L +M  N G       
Sbjct: 19  DPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGV 78

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           Y    K Y  +     A+ ++ +M     C P + SYN ++ + +     D   +++  +
Sbjct: 79  YVGAMKNYGRKGKVQEAVNVFERMDFYD-CEPTVFSYNAIMSVLVDSGYFDQAHKVYMRM 137

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           +  G+ PD+ S+T+ +   C+  +   A +    M  +G     V + T+  G  + +
Sbjct: 138 RDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEEN 195


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 147/286 (51%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G  K            +M E GV PN+ TYN ++N +C+          +   +
Sbjct: 236 YTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCK----------DGRTK 285

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A +VFDEMR RG+  ++ +++ ++    R  +   +   ++ MK  GI P + TY++++
Sbjct: 286 DAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLI 345

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++  A  L  ++   G+ PS  TYN     +  + D +GA K+ ++M+E G+ 
Sbjct: 346 DGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGI- 404

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y ILI  F   + M+   ++   ++  GL PD+ +Y++LIHG C K +  EA +
Sbjct: 405 KPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASR 464

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            F  M+EK   P +V + T+  G  +        +L K+++E+ + 
Sbjct: 465 LFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELA 510



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 136/279 (48%), Gaps = 11/279 (3%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI G C+   I+ +   L E+ E G  PNVV Y  L++G C++            I  A+
Sbjct: 169 LIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGE----------IEKAK 218

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +F EM   G+  +  +++++++   +    +   +    M+E G+ P + TY+ V+  L
Sbjct: 219 DLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQL 278

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  GR +DA ++  EM   GV  +  TYN            N A K+  QMK DG+  PN
Sbjct: 279 CKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGIN-PN 337

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +YN LI  F  + ++     +  D+K  GL P L +Y +L+ G C K     A +   
Sbjct: 338 LITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVK 397

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           EM E+G+ P KVT+  L     +SD +    +L+  ++E
Sbjct: 398 EMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEE 436



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 135/285 (47%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++   CK  R   A +   EM ERGV  N+VTYN L+ G+CR          E  + 
Sbjct: 271 YNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCR----------EMKLN 320

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KV D+M+  GI P++ +++ ++  +    +   +L     +K +G+ P++ TY+ +V
Sbjct: 321 EANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILV 380

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G    A +++ EM   G+ PS  TY      +    +   A++L   M+E GL 
Sbjct: 381 SGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGL- 439

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++H+Y++LI  F    +M+    ++  +      P+   Y  +I G C++     A +
Sbjct: 440 VPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALK 499

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM EK L P   ++  +   L +    +   RL +K+ +  I
Sbjct: 500 LLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGI 544



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 125/265 (47%), Gaps = 12/265 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  +I  + +   ++++  +  EM++ G  P    +N LL  V   +S +    F    
Sbjct: 96  LYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSF---- 151

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                 F+E + + +  DV SF I++     A + + S D L  + E G  P V  Y+++
Sbjct: 152 ------FNENKSK-VVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTL 204

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G IE A++L  EM + G+  +  TY                 ++Y +M+EDG+
Sbjct: 205 IDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGV 264

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+++YN ++       R     +++++++  G+  ++ +Y  LI GLC + K  EA 
Sbjct: 265 -FPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEAN 323

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
           +   +M   G+ P  +T+ TL  G 
Sbjct: 324 KVVDQMKSDGINPNLITYNTLIDGF 348



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 117/263 (44%), Gaps = 46/263 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+C + ++  A     ++  RG+ P++VTYN+L++G CR+              
Sbjct: 341 YNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGD----------TS 390

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+  EM  RGI+P   +++I++  ++R+   + ++     M+E G+ P V TYS ++
Sbjct: 391 GAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLI 450

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++ +A  L   MV     P+   YN     Y     +  A+KL ++M+E  L 
Sbjct: 451 HGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKEL- 509

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
                                               P++ SY  +I  LC+++K KEA +
Sbjct: 510 -----------------------------------APNVASYRYMIEVLCKERKSKEAER 534

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
              +MI+ G+ P       + R 
Sbjct: 535 LVEKMIDSGIDPSTSILSLISRA 557



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 88/207 (42%), Gaps = 5/207 (2%)

Query: 83  SIVLHVYSRAHQPQL--SLDKLNFMKEKGICPT-VATYSSVVKCLCSCGRIEDAEELLGE 139
           S++L V S     Q   S   L+++ E     T    Y  ++        +  +     E
Sbjct: 60  SLLLQVISGKIHSQFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNE 119

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
           MV NG  P +  +N       G    N     + + K     V +++S+ ILI       
Sbjct: 120 MVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSK--VVLDVYSFGILIKGCCEAG 177

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
            ++   ++  ++   G  P++  YT LI G C+K + ++A   F EM + GL+  + T+ 
Sbjct: 178 EIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYT 237

Query: 260 TLYRGLIQSDMLRTWRRLKKKLDEESI 286
            L  GL ++ + +    + +K+ E+ +
Sbjct: 238 VLINGLFKNGVKKQGFEMYEKMQEDGV 264



 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I G+CK      A + L EM E+ + PNV +Y  ++  +C+          E+  
Sbjct: 480 IYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCK----------ERKS 529

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93
           + AE++ ++M   GI+P  +  S++    + +H
Sbjct: 530 KEAERLVEKMIDSGIDPSTSILSLISRAKNDSH 562


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 140/288 (48%), Gaps = 26/288 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-----ERF 56
           YTSLI G C+ + +D+A      M++ G +PN VTY+ L+NG+C    L  +     E  
Sbjct: 240 YTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMV 299

Query: 57  EKTIR--------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +K I                      A ++  +M+ RG  P++ +F+ ++   SR  + +
Sbjct: 300 QKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFE 359

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           +++   + M   G+ PT  TY++++  LC  GR E A  +   M+ +G  PS +TYN   
Sbjct: 360 IAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEII 419

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           K +    D   AM ++ +M + G   PN+ +YN LI  +     ++    +   +KG+GL
Sbjct: 420 KCFCLMGDIQKAMVIFDKMLKAG-SSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGL 478

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            PD  +YT LI G     K + A   F  M+E G+ P  VT+  +  G
Sbjct: 479 KPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDG 526



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 135/266 (50%), Gaps = 13/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I  +C +  I  A     +M++ G  PNV+TYN L+ G C++ +L+          
Sbjct: 415 YNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLN---------- 464

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA ++ + M+  G++PD  +++ ++  +SR  + + +      M E GI P   TY++++
Sbjct: 465 NAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAII 524

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               +  +++DA  L  +MV +G  PS++TYN     +      + A     +M + GL 
Sbjct: 525 DGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGL- 583

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+ +Y   I       R  +  +I+++++     P+L +Y+ LI+GLC++ + ++A  
Sbjct: 584 LPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEM 643

Query: 242 Y--FVEMIEKGLLPQKVTFETLYRGL 265
           Y     +   G  P   T+ TL +GL
Sbjct: 644 YNLLARLTHYGCEPNVDTYTTLVKGL 669



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 146/299 (48%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+L+    K + +D+A     +M+  G+ P+++T+N ++N +C++            ++
Sbjct: 170 FTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGR----------VQ 219

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +   +      P+  +++ ++  + R H   L+    + M + G  P   TYS+++
Sbjct: 220 EAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLI 279

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LCS GR+E+A ++L EMV+ G+ P+  TY            ++ A++L  +MK+ G C
Sbjct: 280 NGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRG-C 338

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN+ ++  LI       + ++   +++ +   GL P   +Y  LI+ LC + +++ A  
Sbjct: 339 VPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFT 398

Query: 242 YFVEMIEKGLLPQKVTFETLYR-----GLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
            F  M+  G LP   T+  + +     G IQ  M+   + LK       IT+ +    Y
Sbjct: 399 IFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGY 457



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 131/291 (45%), Gaps = 26/291 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC---------------- 45
           +T+LI G  +  + ++A     +M+  G+ P  VTYN L+N +C                
Sbjct: 345 FTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWML 404

Query: 46  RRASLHPSERFEKTIR---------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
              SL  ++ + + I+          A  +FD+M   G  P+V +++ +++ Y +     
Sbjct: 405 SHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLN 464

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++  L  MK  G+ P   TY+ ++      G++E A  L   M+ +G+ P+  TY    
Sbjct: 465 NAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAII 524

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y      + A+ L+ +M E G  +P+  +YN++I  F   N +         +   GL
Sbjct: 525 DGYFNLAKVDDALALFWKMVESG-NLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGL 583

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            P++ +YT  I GLC   +   A + F EM ++   P   T+ +L  GL Q
Sbjct: 584 LPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQ 634



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 136/297 (45%), Gaps = 17/297 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+  + ++D A     +M+E G  P+  TYNV+++G  +  S          I 
Sbjct: 520 YTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNS----------IS 569

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE    +M  +G+ P+V +++  +    R  +  L+    + M+++   P + TYSS++
Sbjct: 570 EAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLI 629

Query: 122 KCLCSCGRIEDAE--ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
             LC  GR EDAE   LL  +   G  P+ +TY    K   G      A +L   M++ G
Sbjct: 630 YGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKG 689

Query: 180 LCVPNMHSYN-ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           L  P+   Y  +LIG    L +++    I+  +   G    L  Y  LI  LC++   +E
Sbjct: 690 L-QPSEEIYRALLIGECKNL-KVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEE 747

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
           A   F  M+EK     +V +  L  GL++        +L   ++  + T    FQ Y
Sbjct: 748 AQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLCLKLLHVMESRNCTL--NFQTY 802



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 93/185 (50%), Gaps = 1/185 (0%)

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           SF+ +L    +     L+ D    M   GI P++ T+++++  LC  GR+++A+ ++  +
Sbjct: 169 SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI 228

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
            R    P+A TY      +    + + A  ++ +M +DG C PN  +Y+ LI    +  R
Sbjct: 229 FRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDG-CDPNSVTYSTLINGLCSEGR 287

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           ++   ++  ++   G+ P + +YT+ +  LC+     EA +   +M ++G +P   TF  
Sbjct: 288 LEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTA 347

Query: 261 LYRGL 265
           L  GL
Sbjct: 348 LISGL 352


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 139/289 (48%), Gaps = 26/289 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y +L+ G C+   +++A++   EMI  G+ P++VTY +L+NG C+  SL  ++ F     
Sbjct: 412 YNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEML 471

Query: 57  -----------------EKTIRNAEKVF---DEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                            E  + +  + F   +EM  +G  PD+  +++V+    +    +
Sbjct: 472 HEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLE 531

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + + L  M   G+ P   TY+S++      GR+    E+  EM+  G+ PS  TY    
Sbjct: 532 EASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLI 591

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             + G+     A   + +M+E G+ +PN+ +YN LI     + RMD     + ++   G+
Sbjct: 592 HGHAGKGRLERAFIYFSEMQEKGI-LPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGI 650

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            P+  SYT+LI+  C    W+EA   + +M+++G+ P   T   L + L
Sbjct: 651 FPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQL 699



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 142/320 (44%), Gaps = 61/320 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S IYG CK+ R+  A + L +M+   + P+VV+YN L+ G CR  +L  +      +R
Sbjct: 342 YNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELR 401

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLH--------- 87
           +                         A+++  EM   GI PD+ +++I+++         
Sbjct: 402 SIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLS 461

Query: 88  ----VYSRAHQPQLSLDKLNF----------------------MKEKGICPTVATYSSVV 121
                +       L LD   +                      M  KG  P +  Y+ VV
Sbjct: 462 MAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVV 521

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +E+A ELL +MV +GV P   TY      +          +++ +M   GL 
Sbjct: 522 DGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGL- 580

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y +LI       R++     +++++  G+ P++ +Y  LI+GLC+ ++  +A  
Sbjct: 581 TPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYN 640

Query: 242 YFVEMIEKGLLPQKVTFETL 261
           +F EM+EKG+ P K ++  L
Sbjct: 641 FFAEMVEKGIFPNKYSYTIL 660



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 11/250 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+  +CK  ++      L EM  RG  PN VTYNVL+NG+ ++        FE+   
Sbjct: 237 YNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKG------EFEQ--- 287

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +  EM   G++    +++ +++ Y        +L     M  KG  PTVATY+S +
Sbjct: 288 -AKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFI 346

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+ DA + L +M+ N + P   +YN     Y    +   A  L+ +++   L 
Sbjct: 347 YGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYL- 405

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +YN L+        +++ +++  ++   G+ PD+ +YT+L++G C+      A +
Sbjct: 406 FPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQE 465

Query: 242 YFVEMIEKGL 251
           +F EM+ +GL
Sbjct: 466 FFDEMLHEGL 475



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 132/283 (46%), Gaps = 11/283 (3%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI+ + K + ++       +MI+  + P+V   N +L  + R   L         +  A 
Sbjct: 170 LIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILR-ILRDKDL---------MSKAV 219

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           +V+  M   GI+P + +++ +L  Y +  + Q  LD L+ M+ +G  P   TY+ ++  L
Sbjct: 220 EVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGL 279

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
              G  E A+ L+GEM++ G+  SA TYN     Y  +     A+ L  +M   G   P 
Sbjct: 280 SKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKG-ASPT 338

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +YN  I     L RM    +  +D+  + L PD+ SY  LI+G C      +A   F 
Sbjct: 339 VATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFD 398

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           E+    L P  VT+ TL  GL +   L   ++LK ++  E I 
Sbjct: 399 ELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIA 441



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 91/180 (50%), Gaps = 10/180 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  ++ G CK+  ++ A   L +M+  GV P+ VTY  +++       L          
Sbjct: 516 IYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRL---------- 565

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R   ++F EM  +G+ P V ++++++H ++   + + +    + M+EKGI P V TY+S+
Sbjct: 566 RKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSL 625

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   R++ A     EMV  G+ P+  +Y     E     +   A+ LY+QM + G+
Sbjct: 626 INGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGV 685


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 140/288 (48%), Gaps = 26/288 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-----ERF 56
           YTSLI G C+ + +D+A      M++ G +PN VTY+ L+NG+C    L  +     E  
Sbjct: 240 YTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMV 299

Query: 57  EKTIR--------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +K I                      A ++  +M+ RG  P++ +F+ ++   SR  + +
Sbjct: 300 QKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFE 359

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           +++   + M   G+ PT  TY++++  LC  GR E A  +   M+ +G  PS +TYN   
Sbjct: 360 IAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEII 419

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           K +    D   AM ++ +M + G   PN+ +YN LI  +     ++    +   +KG+GL
Sbjct: 420 KCFCLMGDIQKAMVIFDKMLKAG-SSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGL 478

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            PD  +YT LI G     K + A   F  M+E G+ P  VT+  +  G
Sbjct: 479 KPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDG 526



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 135/266 (50%), Gaps = 13/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I  +C +  I  A     +M++ G  PNV+TYN L+ G C++ +L+          
Sbjct: 415 YNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLN---------- 464

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA ++ + M+  G++PD  +++ ++  +SR  + + +      M E GI P   TY++++
Sbjct: 465 NAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAII 524

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               +  +++DA  L  +MV +G  PS++TYN     +      + A     +M + GL 
Sbjct: 525 DGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGL- 583

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+ +Y   I       R  +  +I+++++     P+L +Y+ LI+GLC++ + ++A  
Sbjct: 584 LPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEM 643

Query: 242 Y--FVEMIEKGLLPQKVTFETLYRGL 265
           Y     +   G  P   T+ TL +GL
Sbjct: 644 YNLLARLTHYGCEPNVDTYTTLVKGL 669



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 146/299 (48%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+L+    K + +D+A     +M+  G+ P+++T+N ++N +C++            ++
Sbjct: 170 FTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGR----------VQ 219

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +   +      P+  +++ ++  + R H   L+    + M + G  P   TYS+++
Sbjct: 220 EAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLI 279

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LCS GR+E+A ++L EMV+ G+ P+  TY            ++ A++L  +MK+ G C
Sbjct: 280 NGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRG-C 338

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN+ ++  LI       + ++   +++ +   GL P   +Y  LI+ LC + +++ A  
Sbjct: 339 VPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFT 398

Query: 242 YFVEMIEKGLLPQKVTFETLYR-----GLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
            F  M+  G LP   T+  + +     G IQ  M+   + LK       IT+ +    Y
Sbjct: 399 IFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGY 457



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 131/291 (45%), Gaps = 26/291 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC---------------- 45
           +T+LI G  +  + ++A     +M+  G+ P  VTYN L+N +C                
Sbjct: 345 FTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWML 404

Query: 46  RRASLHPSERFEKTIR---------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
              SL  ++ + + I+          A  +FD+M   G  P+V +++ +++ Y +     
Sbjct: 405 SHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLN 464

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++  L  MK  G+ P   TY+ ++      G++E A  L   M+ +G+ P+  TY    
Sbjct: 465 NAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAII 524

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y      + A+ L+ +M E G  +P+  +YN++I  F   N +         +   GL
Sbjct: 525 DGYFNLAKVDDALALFWKMVESG-NLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGL 583

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            P++ +YT  I GLC   +   A + F EM ++   P   T+ +L  GL Q
Sbjct: 584 LPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQ 634



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 136/297 (45%), Gaps = 17/297 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+  + ++D A     +M+E G  P+  TYNV+++G  +  S          I 
Sbjct: 520 YTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNS----------IS 569

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE    +M  +G+ P+V +++  +    R  +  L+    + M+++   P + TYSS++
Sbjct: 570 EAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLI 629

Query: 122 KCLCSCGRIEDAE--ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
             LC  GR EDAE   LL  +   G  P+ +TY    K   G      A +L   M++ G
Sbjct: 630 YGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKG 689

Query: 180 LCVPNMHSYN-ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           L  P+   Y  +LIG    L +++    I+  +   G    L  Y  LI  LC++   +E
Sbjct: 690 L-QPSEEIYRALLIGECKNL-KVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEE 747

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
           A   F  M+EK     +V +  L  GL++        +L   ++  + T    FQ Y
Sbjct: 748 AQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLCLKLLHVMESRNCTL--NFQTY 802



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 93/185 (50%), Gaps = 1/185 (0%)

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           SF+ +L    +     L+ D    M   GI P++ T+++++  LC  GR+++A+ ++  +
Sbjct: 169 SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI 228

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
            R    P+A TY      +    + + A  ++ +M +DG C PN  +Y+ LI    +  R
Sbjct: 229 FRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDG-CDPNSVTYSTLINGLCSEGR 287

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           ++   ++  ++   G+ P + +YT+ +  LC+     EA +   +M ++G +P   TF  
Sbjct: 288 LEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTA 347

Query: 261 LYRGL 265
           L  GL
Sbjct: 348 LISGL 352


>gi|414872586|tpg|DAA51143.1| TPA: empty pericarp4 [Zea mays]
          Length = 595

 Score =  133 bits (335), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 135/272 (49%), Gaps = 13/272 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+YGWC+  ++D A+  L  M    V  +VV +N LL G           RFE    
Sbjct: 192 YTALLYGWCRQGKLDEAKHVLARMKAADVALDVVVFNTLLAGFVAEG------RFE---- 241

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  +M  RG  P+  S++ ++       +   ++     M+ KG  P   TY ++V
Sbjct: 242 DAFELAGQMEQRGCPPNAVSYTTLIQGLGARGRVDEAMRVFVEMRRKGCAPDAVTYGTLV 301

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+I    E L  M R+G+   A  Y+ FF  +  ++     ++L  +M+E   C
Sbjct: 302 NTFCKAGKISQGYEFLDAMSRDGLRVDAAVYHGFFVAHEKKEQLEECLELMERMRE-CRC 360

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YN++I +   L        +WN+++ +GL P +D++ +++ GL  +    EAC 
Sbjct: 361 PPDLKIYNVVIRLACRLGETKQAMTLWNEMESAGLSPVVDTFAIVVSGLVGQGLLIEACS 420

Query: 242 YFVEMIEKGL--LPQKVTFETLYRGLIQSDML 271
           YF +M+ +GL  +PQ    + L   L++ + L
Sbjct: 421 YFKDMVGRGLFVVPQYGVLKDLLNALVRDEKL 452



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 135/304 (44%), Gaps = 20/304 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G     R+D A R   EM  +G  P+ VTY  L+N  C+   +     F     
Sbjct: 262 YTTLIQGLGARGRVDEAMRVFVEMRRKGCAPDAVTYGTLVNTFCKAGKISQGYEF----- 316

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 D M   G+  D   +      + +  Q +  L+ +  M+E    P +  Y+ V+
Sbjct: 317 -----LDAMSRDGLRVDAAVYHGFFVAHEKKEQLEECLELMERMRECRCPPDLKIYNVVI 371

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G  + A  L  EM   G+ P  +T+        G+     A   ++ M   GL 
Sbjct: 372 RLACRLGETKQAMTLWNEMESAGLSPVVDTFAIVVSGLVGQGLLIEACSYFKDMVGRGLF 431

Query: 182 VPNMHSYNILIGMFMALNR---MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           V  +  Y +L  +  AL R   +++ +++W  +   G   ++ ++T+ IH L  K+  KE
Sbjct: 432 V--VPQYGVLKDLLNALVRDEKLELAKDVWKCIVSKGCELNVSAWTIWIHALFAKKHVKE 489

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
           AC Y ++M+E GL+PQ  TF  L +GL      + + R       E +   +E ++  FK
Sbjct: 490 ACLYCLDMLEAGLMPQPDTFAKLMKGLK-----KLYNRQIAAEITEKVRKMAEERHVSFK 544

Query: 299 PYRR 302
            Y+R
Sbjct: 545 MYKR 548



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 2/179 (1%)

Query: 83  SIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR 142
           S++  V  R  QP+L    L+ +  +      A + S+++ L   G +  AE+L+ E+ +
Sbjct: 124 SLLCPVLRRLPQPRLLPFALSLLSARPDHDQPALFLSLLESLSKAGHVLTAEQLVEEL-Q 182

Query: 143 NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202
             +  S   Y      +  +   + A  +  +MK   + + ++  +N L+  F+A  R +
Sbjct: 183 PRLPLSLRHYTALLYGWCRQGKLDEAKHVLARMKAADVAL-DVVVFNTLLAGFVAEGRFE 241

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
              E+   ++  G  P+  SYT LI GL  + +  EA + FVEM  KG  P  VT+ TL
Sbjct: 242 DAFELAGQMEQRGCPPNAVSYTTLIQGLGARGRVDEAMRVFVEMRRKGCAPDAVTYGTL 300


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  133 bits (335), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 160/343 (46%), Gaps = 61/343 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKTI 60
           Y +L+  + +   +D AER +G M E G++PN+VT+N ++NG+C+   +  + + F++ +
Sbjct: 228 YNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMV 287

Query: 61  RN------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           R                         A  VF EM  +GI PDV +F+ ++HV  +A   +
Sbjct: 288 REGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLE 347

Query: 97  LSLDKLNFMKEKG-----------------------------------ICPTVATYSSVV 121
            ++  +  M+E+G                                   I P+V  Y++++
Sbjct: 348 RAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALI 407

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR+++A ELL EM   G+ P   TY+     Y    D + A +L +QM E G+ 
Sbjct: 408 NGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGV- 466

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+  +Y+ LI +     R+     ++ ++   GL PD  +YT LI G C++   + A  
Sbjct: 467 LPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALS 526

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
              +M++ G+LP  VT+  L  GL +S      ++L  KL  E
Sbjct: 527 LHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHE 569



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 133/283 (46%), Gaps = 16/283 (5%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A RF   M+  GV PNV TYN+L+  +C R   H  E        A  +  +MR  G  P
Sbjct: 174 ARRFFDSMLSDGVAPNVYTYNILVRALCGRG--HRKE--------ALSILRDMRGAGCGP 223

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           +V +++ ++  + RA +   +   +  M+E G+ P + T++S+V  +C  G++EDA ++ 
Sbjct: 224 NVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVF 283

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            EMVR G+ P   +YN     Y     ++ A+ ++ +M + G+ +P++ ++  LI +   
Sbjct: 284 DEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGI-MPDVVTFTSLIHVMCK 342

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
              ++    +   ++  GL  +  ++T LI G C+K    +A      M +  + P  V 
Sbjct: 343 AGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVC 402

Query: 258 FETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           +  L  G      +   R L      K L  + +T+ +    Y
Sbjct: 403 YNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAY 445



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 143/330 (43%), Gaps = 61/330 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G+CK   +D A   +  M +  ++P+VV YN L+NG C    +           
Sbjct: 368 FTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMD---------- 417

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++  EM  +G++PDV ++S ++  Y +      + +    M EKG+ P   TYSS++
Sbjct: 418 EARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLI 477

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC   R+ DA  L   M++ G+ P   TY      +    +   A+ L+ +M + G+ 
Sbjct: 478 RVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGV- 536

Query: 182 VPNMHSYNILIG-------------------------------MFMALNRMDMVREIWND 210
           +P++ +Y++LI                                  M   R   ++ +   
Sbjct: 537 LPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLAL 596

Query: 211 VKG---SGLGPDLDS----------------YTMLIHGLCEKQKWKEACQYFVEMIEKGL 251
           +KG    GL  + D                 Y++LIHG C      +A  +  +M++ G 
Sbjct: 597 LKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGF 656

Query: 252 LPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            P   +  +L RGL ++ M+    ++ ++L
Sbjct: 657 APNSTSTISLIRGLFENGMVVEADQVIQQL 686



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 121/256 (47%), Gaps = 18/256 (7%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G  P+V+ YN +L  +   ASL  + RF          FD M   G+ P+V +++I++  
Sbjct: 151 GYVPSVLAYNAVLLAL-SDASLTSARRF----------FDSMLSDGVAPNVYTYNILVRA 199

Query: 89  Y-SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
              R H+ + +L  L  M+  G  P V TY+++V      G ++ AE L+G M   G+ P
Sbjct: 200 LCGRGHRKE-ALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKP 258

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
           +  T+N              A K++ +M  +GL  P+  SYN L+G +           +
Sbjct: 259 NLVTFNSMVNGMCKAGKMEDARKVFDEMVREGL-APDGVSYNTLVGGYCKAGCSHEALSV 317

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           + ++   G+ PD+ ++T LIH +C+    + A     +M E+GL   +VTF  L  G  +
Sbjct: 318 FAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCK 377

Query: 268 ----SDMLRTWRRLKK 279
                D L   R +K+
Sbjct: 378 KGFLDDALLAVRGMKQ 393



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 89/219 (40%), Gaps = 40/219 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV----------------- 44
           YTSLI G CK   ++ A     +M++ GV P+VVTY+VL+NG+                 
Sbjct: 508 YTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLY 567

Query: 45  -----------------CRRASLHPSERFEK------TIRNAEKVFDEMRVRGIEPDVTS 81
                            CR+A L       K       +  A+KV+  M  R    D + 
Sbjct: 568 HEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSV 627

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           +S+++H + RA     +L     M + G  P   +  S+++ L   G + +A++++ +++
Sbjct: 628 YSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQLL 687

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
                  AE             + +  + +   M +DGL
Sbjct: 688 NYCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAKDGL 726


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  133 bits (335), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 146/298 (48%), Gaps = 11/298 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT++I G+CK+  +  A +   EM  + + P++VTY  +++G+C+   +          
Sbjct: 349 VYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKM---------- 398

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++F+EM V+G+EPD  +++ ++  Y +A + + +    N M +KG+ P V TY+++
Sbjct: 399 VEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTAL 458

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              LC  G I+ A ELL EM R G+ P+  TYN          +    +KL  +M   G 
Sbjct: 459 ADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGF 518

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  +Y  L+  +  +  M    E+   +    L P L ++ +L++G C     ++  
Sbjct: 519 -YPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGE 577

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
           +    M+EKG++P   TF +L +     + +R    + K + +  +   S   N   K
Sbjct: 578 RLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIK 635



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 138/258 (53%), Gaps = 11/258 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L  G CK   ID+A   L EM  +G++PNV TYN ++NG+C+  ++      E+T+ 
Sbjct: 455 YTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNI------EQTV- 507

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K+ +EM + G  PD  +++ ++  Y +  +   + + L  M  K + PT+ T++ ++
Sbjct: 508 ---KLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLM 564

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +ED E L+  M+  G+ P+A T+N   K+Y  + +     ++Y+ M + G+ 
Sbjct: 565 NGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGV- 623

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+ ++YNILI        M     +  ++   G      +Y  LI G  +++K+ EA +
Sbjct: 624 MPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARK 683

Query: 242 YFVEMIEKGLLPQKVTFE 259
            F EM + GL+ +K  ++
Sbjct: 684 LFEEMRKHGLVAEKDIYD 701



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 133/276 (48%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+CK   +  A     +M+++G+ PNVVTY  L +G+C+             I 
Sbjct: 420 YTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGE----------ID 469

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++  EM  +G++P+V +++ +++   +    + ++  +  M   G  P   TY++++
Sbjct: 470 VANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLM 529

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +  A ELL  M+   + P+  T+N     +          +L   M E G+ 
Sbjct: 530 DAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGI- 588

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN  ++N L+  +   N M    EI+  +   G+ PD ++Y +LI G C+ +  KEA  
Sbjct: 589 MPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWF 648

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
              EM+EKG      T++ L RG  +       R+L
Sbjct: 649 LHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKL 684



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 120/252 (47%), Gaps = 11/252 (4%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           C+I  +D   + + E+  +G++P+   YN ++  +C+             +  AE++   
Sbjct: 288 CRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGE----------VVEAEQLLRG 337

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           MR  G+ PD   ++ V+  + +      +    + M+ K I P + TY+SV+  +C  G+
Sbjct: 338 MRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGK 397

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           + +A E+  EM+  G+ P   TY      Y    +   A  ++ QM + GL  PN+ +Y 
Sbjct: 398 MVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGL-TPNVVTYT 456

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            L         +D+  E+ +++   GL P++ +Y  +++GLC+    ++  +   EM   
Sbjct: 457 ALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLA 516

Query: 250 GLLPQKVTFETL 261
           G  P  +T+ TL
Sbjct: 517 GFYPDTITYTTL 528



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 127/256 (49%), Gaps = 11/256 (4%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           C    I +A +   E  E GV  N V+ N++L+ +C+             +R A  +  +
Sbjct: 218 CNFEGIKIAVKVFEEFPELGVCWNTVSCNIVLHCLCQLGK----------VREAHNLLVQ 267

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           M  RG  PDV S+ +V+  Y R  +    L  ++ +K KG+ P    Y++++  LC  G 
Sbjct: 268 MTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGE 327

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           + +AE+LL  M + GV P    Y      +    + + A KL+ +M+   + VP++ +Y 
Sbjct: 328 VVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKI-VPDIVTYT 386

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            +I       +M   RE++N++   GL PD  +YT LI G C+  + KEA     +M++K
Sbjct: 387 SVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQK 446

Query: 250 GLLPQKVTFETLYRGL 265
           GL P  VT+  L  GL
Sbjct: 447 GLTPNVVTYTALADGL 462



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 99/193 (51%), Gaps = 11/193 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+  +CK+  +  A   L  M+ + ++P +VT+NVL+NG C    L           
Sbjct: 525 YTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGML----------E 574

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           + E++ + M  +GI P+ T+F+ ++  Y   +  + + +    M ++G+ P   TY+ ++
Sbjct: 575 DGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILI 634

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C    +++A  L  EMV  G   +A TY+   + +  RK    A KL+ +M++ GL 
Sbjct: 635 KGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGL- 693

Query: 182 VPNMHSYNILIGM 194
           V     Y+I + +
Sbjct: 694 VAEKDIYDIFVDV 706


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  133 bits (335), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 138/267 (51%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI+G    N+   A   +  M+ +G +P++VTY V++NG+C+R              
Sbjct: 189 FNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL--------- 239

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + ++M    +EP V  ++ ++    +      +L+    M+ KGI P V TYSS++
Sbjct: 240 -AFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLI 298

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLC+ GR  DA  LL +M+   + P   T++     +        A KLY +M +  + 
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI- 357

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ LI  F   +R+D  ++++  +      PD+ SY+ LI G C+ ++  E  +
Sbjct: 358 DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGME 417

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F EM ++GL+   VT+ TL +GL Q+
Sbjct: 418 LFREMSQRGLVGNTVTYTTLIQGLFQA 444



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 139/283 (49%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI   C   R   A R L +MIER + P+V T++ L++   +          E  + 
Sbjct: 294 YSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK----------EGKLV 343

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK++DEM  R I+P + ++S +++ +    +   +     FM  K   P V +YS+++
Sbjct: 344 EAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLI 403

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R+++  EL  EM + G+  +  TY    +      D + A +++++M  DG+ 
Sbjct: 404 KGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGV- 462

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN L+       +++    ++  ++ S + P + +Y ++I G+C+  K ++   
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KG+ P  V + T+  G  +         L K++ E+
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKED 565



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 139/263 (52%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++LI  + K  ++  AE+   EM++R ++P++VTY+ L+NG C    +H  +R ++   
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC----MH--DRLDE--- 379

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++F+ M  +   PDV S+S ++  + +A +    ++    M ++G+     TY++++
Sbjct: 380 -AKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLI 438

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + L   G  + A+E+  EMV +GV P+  TYN              AM ++  ++   + 
Sbjct: 439 QGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM- 497

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P +++YNI+I       +++   +++ ++   G+ PD+ +Y  +I G C K   +EA  
Sbjct: 498 EPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADA 557

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F EM E G LP    + TL R 
Sbjct: 558 LFKEMKEDGTLPNSGCYNTLIRA 580



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 139/279 (49%), Gaps = 17/279 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI  +C+ +++ +A   LG+M++ G EPN+VT + LLNG C            K I 
Sbjct: 119 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCH----------SKRIS 168

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLH---VYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A  + D+M V G +P+  +F+ ++H   ++++A +    +D+   M  KG  P + TY 
Sbjct: 169 EAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDR---MVAKGCQPDLVTYG 225

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            VV  LC  G  + A  LL +M +  + P    Y          K  + A+ L+++M+  
Sbjct: 226 VVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETK 285

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  PN+ +Y+ LI       R      + +D+    + PD+ +++ LI    ++ K  E
Sbjct: 286 GI-RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A + + EM+++ + P  VT+ +L  G    D L   +++
Sbjct: 345 AEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 383



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 133/282 (47%), Gaps = 16/282 (5%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           ++D A    GEM++    P+++ ++ LL+ + +        +F+  I   E    +M+  
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKM------NKFDVVISLGE----QMQNL 110

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           G+  +  ++SI+++ + R  Q  L+L  L  M + G  P + T SS++   C   RI +A
Sbjct: 111 GMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEA 170

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             L+ +M   G  P+  T+N           A+ A+ L  +M   G C P++ +Y +++ 
Sbjct: 171 VALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKG-CQPDLVTYGVVVN 229

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
                   D+   + N ++   L P +  YT +I GLC+ +   +A   F EM  KG+ P
Sbjct: 230 GLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRP 289

Query: 254 QKVTFETLYRGLIQ----SDMLRTWRRL-KKKLDEESITFGS 290
             VT+ +L   L      SD  R    + ++K++ +  TF +
Sbjct: 290 NVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSA 331



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 110/229 (48%), Gaps = 11/229 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI G+CK  R+D       EM +RG+  N VTY  L+ G+ +               
Sbjct: 399 YSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDM--------- 449

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++F EM   G+ P++ +++ +L    +  + + ++    +++   + PT+ TY+ ++
Sbjct: 450 -AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMI 508

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + +C  G++ED  +L   +   GV P    YN     +  +     A  L+++MKEDG  
Sbjct: 509 EGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDG-T 567

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           +PN   YN LI   +     +   E+  +++  G   D  +  ++ + L
Sbjct: 568 LPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 616



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 104/230 (45%), Gaps = 1/230 (0%)

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           E  + +A  +F EM      P +  FS +L   ++ ++  + +     M+  G+     T
Sbjct: 59  ELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYT 118

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           YS ++ C C   ++  A  +LG+M++ G  P+  T +     Y   K  + A+ L  QM 
Sbjct: 119 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMF 178

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G   PN  ++N LI      N+      + + +   G  PDL +Y ++++GLC++   
Sbjct: 179 VTGY-QPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             A     +M +  L P  + + T+  GL ++  +     L K+++ + I
Sbjct: 238 DLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGI 287


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 136/264 (51%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G C   R   AE+ L +M+ RG  P+VVT+N+L+N +CR+  L           
Sbjct: 157 YNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLG---------- 206

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V ++M   G  P+  S++ +LH + +  + + +++ L  M  +G  P + TY++++
Sbjct: 207 RAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLL 266

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+++ A ELL ++   G  P   TYN            + A KL  +M+  GL 
Sbjct: 267 TALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGL- 325

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ L+G      ++D   + ++D++  G+ P+  +Y  ++ GLC+ +K   A  
Sbjct: 326 KPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAID 385

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
           +   M+++G  P + ++  L  GL
Sbjct: 386 FLAYMVQRGCKPTEASYTILIEGL 409



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 134/266 (50%), Gaps = 11/266 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           TSLI G+CKI +   A R +  + + G  P+V+TYNVL++G+C                +
Sbjct: 123 TSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWM----------D 172

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           AEK+  +M  RG  P V +F+I+++   R      ++D L  M + G  P   +Y+ ++ 
Sbjct: 173 AEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLH 232

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C   ++E A E LG+M   G  P   TYN            + A++L  Q+   G C 
Sbjct: 233 GFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKG-CS 291

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P + +YN +I     + + D   ++ ++++  GL PD+ +Y+ L+ GL  + K  EA ++
Sbjct: 292 PVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKF 351

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQS 268
           F ++   G+ P  +T+  +  GL ++
Sbjct: 352 FHDLEVLGVKPNAITYNAIMLGLCKA 377



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 113/241 (46%), Gaps = 17/241 (7%)

Query: 40  LLNGVCRRASLHPSERFE---------KTIRNAE-----KVFDEMRVRGIEPDVTSFSIV 85
           L NG    + +H    FE         K +RN E     +  + M  RG  PD+   + +
Sbjct: 66  LGNGHVSLSPIHSLTNFEEIESNNNLSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSL 125

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           +  + +  + + +   +  +++ G  P V TY+ ++  +CS GR  DAE+LL +MVR G 
Sbjct: 126 IRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGC 185

Query: 146 CPSAETYNCFFKEYRGRKDANG-AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
            PS  T+N     +  RK   G A+ +  +M + G C PN  SYN L+  F    +M+  
Sbjct: 186 SPSVVTFNILI-NFLCRKGLLGRAIDVLEKMPKHG-CTPNSLSYNPLLHGFCKEKKMERA 243

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            E    +   G  PD+ +Y  L+  LC+  K   A +   ++  KG  P  +T+ T+  G
Sbjct: 244 IEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDG 303

Query: 265 L 265
           L
Sbjct: 304 L 304



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%)

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++     LI  F  + +      I   ++ SG  PD+ +Y +LI G+C   +W +A +
Sbjct: 116 IPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEK 175

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              +M+ +G  P  VTF  L   L +  +L
Sbjct: 176 LLADMVRRGCSPSVVTFNILINFLCRKGLL 205


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 150/312 (48%), Gaps = 27/312 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKTI 60
           Y+S+I G CK   +  A   L EM++ G +PNV T+  L++G+C++     + R F K I
Sbjct: 317 YSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLI 376

Query: 61  RN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           R+                         AE +F+ M+ +G+ P+  +++ ++  + +A   
Sbjct: 377 RSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNF 436

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             + + +  M  +G  P   TY+S+V  LC  GR E+A +LL    +N +     TY   
Sbjct: 437 SKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTIL 496

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
             E   R D N A+    +M + G   P++H Y  LI  F   N M    +++++V   G
Sbjct: 497 ISEQCKRADMNQALVFLNKMFKVGF-QPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLG 555

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           L P  ++YT +I G C ++K   A ++F +M + G  P  +++  L  GL +   L   R
Sbjct: 556 LAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEAR 615

Query: 276 RLKKKLDEESIT 287
           +L   + ++ ++
Sbjct: 616 QLYDTMIDKGLS 627



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 124/264 (46%), Gaps = 14/264 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G CK      A   +  M   G  PN  TYN +++G+C+R       R E+  +
Sbjct: 423 YTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRG------RAEEAFK 476

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                F       IE D  +++I++    +      +L  LN M + G  P +  Y++++
Sbjct: 477 LLNTGFQNQ----IEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLI 532

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    ++D+E+L  E+++ G+ P+ ETY      Y   K  + A+K +++M + G C
Sbjct: 533 AAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHG-C 591

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  SY  LI      +R+D  R++++ +   GL P   +   L +  C+ + +  A  
Sbjct: 592 APDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASA-M 650

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
             +E + K L  +  T  TL R L
Sbjct: 651 VILERLNKKLWIR--TVHTLIRKL 672



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 10/251 (3%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           ++ A     EM  RGV P+  TY  ++ G CR  ++  ++R+            EM  RG
Sbjct: 225 VEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRW----------ICEMMERG 274

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
              D  + ++++  +        ++   + + + G+ P +  YSS++  LC  G ++ A 
Sbjct: 275 FVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAF 334

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           ELL EMV+NG  P+  T+         +     A +L+ ++       PN+H+Y  +I  
Sbjct: 335 ELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISG 394

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
           +    ++     ++  +K  GL P+ ++YT LI G C+   + +A +    M  +G  P 
Sbjct: 395 YCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPN 454

Query: 255 KVTFETLYRGL 265
             T+ ++  GL
Sbjct: 455 TCTYNSIVDGL 465



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/229 (19%), Positives = 103/229 (44%), Gaps = 2/229 (0%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           ++ A  +  +MR +G+       + ++ V +     + + +  + M  +G+ P   TY  
Sbjct: 190 LKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKY 249

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++   C  G + +A+  + EM+  G      T       +  +   N A+  + ++ + G
Sbjct: 250 IIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMG 309

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           L  PN+ +Y+ +I        +    E+  ++  +G  P++ ++T LIHGLC+K   + A
Sbjct: 310 LS-PNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERA 368

Query: 240 CQYFVEMIEK-GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            + F+++I      P   T+  +  G  + + L     L +++ E+ + 
Sbjct: 369 FRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLV 417



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 1/194 (0%)

Query: 88  VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
           V++   + + ++D +  M+ +G+  T    + ++        +E A  +  EM   GV P
Sbjct: 183 VFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYP 242

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
            + TY      Y    +   A +   +M E G  V N  +  ++I  F   + ++     
Sbjct: 243 DSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNA-TLTLIITAFCEKSLVNRAVWF 301

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           ++ V   GL P+L +Y+ +I GLC++   K+A +   EM++ G  P   T  +L  GL +
Sbjct: 302 FHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCK 361

Query: 268 SDMLRTWRRLKKKL 281
                   RL  KL
Sbjct: 362 KGWTERAFRLFLKL 375



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 45/177 (25%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+LI  +C+ N +  +E+   E+I+ G+ P   TY  ++ G CR          EK +
Sbjct: 527 LYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCR----------EKKV 576

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K F +M   G  PD  S                                   Y ++
Sbjct: 577 SLAVKFFQKMSDHGCAPDSIS-----------------------------------YGAL 601

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           +  LC   R+++A +L   M+  G+ P   T      EY   +D   AM +  ++ +
Sbjct: 602 ISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNK 658


>gi|15223927|ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g71060, mitochondrial; Flags: Precursor
 gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Arabidopsis thaliana]
 gi|332197036|gb|AEE35157.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 145/288 (50%), Gaps = 27/288 (9%)

Query: 2   YTSLIYGWCK---INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK 58
           YT L+ GW +   + R+D   R   EM + G EP+VV Y +++N  C+      ++++E+
Sbjct: 235 YTILLEGWGQELNLLRVDEVNR---EMKDEGFEPDVVAYGIIINAHCK------AKKYEE 285

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            IR     F+EM  R  +P    F  +++      +   +L+     K  G      TY+
Sbjct: 286 AIR----FFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYN 341

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           ++V   C   R+EDA + + EM   GV P+A TY+         + +  A ++Y+ M   
Sbjct: 342 ALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMS-- 399

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
             C P + +Y I++ MF    R+DM  +IW+++KG G+ P +  ++ LI  LC + K  E
Sbjct: 400 --CEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDE 457

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQ-------SDMLRTWRRLKK 279
           AC+YF EM++ G+ P    F  L + L+        +D++    RL+K
Sbjct: 458 ACEYFNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVKMDRLRK 505



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 10/228 (4%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNF-MKEKGICPTVAT 116
           + + +A+KVFD+M+ +  EPD+ S++I+L  + +     L +D++N  MK++G  P V  
Sbjct: 211 RNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELN-LLRVDEVNREMKDEGFEPDVVA 269

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y  ++   C   + E+A     EM +    PS   +          K  N A++ + + K
Sbjct: 270 YGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSK 329

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G  +    +YN L+G +    RM+   +  ++++  G+GP+  +Y +++H L   Q+ 
Sbjct: 330 SSGFPL-EAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRS 388

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML----RTWRRLKKK 280
           KEA + +  M      P   T+E + R     + L    + W  +K K
Sbjct: 389 KEAYEVYQTM---SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGK 433



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 16/208 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ SLI G     +++ A  F       G      TYN L+   C       S+R E   
Sbjct: 304 IFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCW------SQRME--- 354

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSS 119
            +A K  DEMR++G+ P+  ++ I+LH   R  + + + +    M     C PTV+TY  
Sbjct: 355 -DAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMS----CEPTVSTYEI 409

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +V+  C+  R++ A ++  EM   GV P    ++            + A + + +M + G
Sbjct: 410 MVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVG 469

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREI 207
           +  P  H ++ L    +   R D V ++
Sbjct: 470 IRPPG-HMFSRLKQTLLDEGRKDKVTDL 496



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/196 (18%), Positives = 91/196 (46%), Gaps = 2/196 (1%)

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           + D+M+ + +    T F+++   Y+RA + + ++   + M+E G     + ++ ++  L 
Sbjct: 150 LVDDMKAKKLLSKET-FALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLS 208

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
               + DA+++  +M +    P  ++Y    + +    +     ++ R+MK++G   P++
Sbjct: 209 KSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGF-EPDV 267

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
            +Y I+I       + +     +N+++     P    +  LI+GL  ++K  +A ++F  
Sbjct: 268 VAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFER 327

Query: 246 MIEKGLLPQKVTFETL 261
               G   +  T+  L
Sbjct: 328 SKSSGFPLEAPTYNAL 343


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 156/326 (47%), Gaps = 40/326 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG--VEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           Y+ LI G CK+ RID A   + EM  +   V PN++TYN  L+G+C+++    +    ++
Sbjct: 110 YSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRS 169

Query: 60  IRN---------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92
           +R+                           A  VFD+M   G  P+V +++ +++   +A
Sbjct: 170 LRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKA 229

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA--- 149
            + + +   +  M +KG+ P V TYS +V   C   R+++A ELL  M   G  P+    
Sbjct: 230 DKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVP 289

Query: 150 --ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
              T+N          +   A  L+ +M    L  P++ ++  LI       +++  R+I
Sbjct: 290 DKVTFNILIAGACKAGNFEQASALFEEMVAKNL-QPDVMTFGALIDGLCKAGQVEAARDI 348

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            + +   G+ P++ +Y  L+HGLC+  + +EACQ+  EM+  G +P  +T+ +L   L +
Sbjct: 349 LDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCR 408

Query: 268 S----DMLRTWRRLKK-KLDEESITF 288
           +    D L+    LK    D +++T+
Sbjct: 409 ASRTDDALQLVSELKSFGWDPDTVTY 434



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 137/286 (47%), Gaps = 16/286 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNV-----VTYNVLLNGVCRRASLHPSERF 56
           Y+ L+  +CK +R+D A   L  M  RG  PNV     VT+N+L+ G C+  +      F
Sbjct: 254 YSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGN------F 307

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           E+    A  +F+EM  + ++PDV +F  ++    +A Q + + D L+ M   G+ P V T
Sbjct: 308 EQ----ASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVT 363

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+++V  LC  GRIE+A + L EMV +G  P + TY             + A++L  ++K
Sbjct: 364 YNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELK 423

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G   P+  +YNIL+       + +    +  ++ G G  PD  ++     GL      
Sbjct: 424 SFGW-DPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNL 482

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
               +    ++ KG+LP   T  ++   + +S  L   + + K+ +
Sbjct: 483 AGTMELLRVVLAKGMLPDATTCSSILDWVCRSGKLDDVKAMIKEFE 528



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 132/271 (48%), Gaps = 14/271 (5%)

Query: 2   YTSLIYGWCKINRIDMA-ERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y  ++   C+      A E F GEM   GV P +VTYN ++NG+C+   L          
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGA-------- 55

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               ++F+E+  RG  PDV +++ ++    +A   + +      M  +G  P V TYS +
Sbjct: 56  --GMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVL 113

Query: 121 VKCLCSCGRIEDAEELLGEMVRNG--VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +  LC  GRI++A EL+ EM R    V P+  TYN F      +     A +L R +++ 
Sbjct: 114 INGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDG 173

Query: 179 GLCV-PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            L V P+  +++ LI       ++D    +++D+   G  P++ +Y  L++GLC+  K +
Sbjct: 174 SLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKME 233

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            A      M++KG+ P  +T+  L     ++
Sbjct: 234 RAHAMIESMVDKGVTPDVITYSVLVDAFCKA 264



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 137/285 (48%), Gaps = 20/285 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI   CK   ++ A R  G+M  RG  PNVVTY+VL+NG+C+             I 
Sbjct: 75  YNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGR----------ID 124

Query: 62  NAEKVFDEMRVRGIE--PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG--ICPTVATY 117
            A ++  EM  +  +  P++ +++  L    +      + + +  +++    + P   T+
Sbjct: 125 EARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTF 184

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           S+++  LC CG+I++A  +  +M+  G  P+  TYN              A  +   M +
Sbjct: 185 STLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVD 244

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG-----LGPDLDSYTMLIHGLCE 232
            G+  P++ +Y++L+  F   +R+D   E+ + +   G     L PD  ++ +LI G C+
Sbjct: 245 KGV-TPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACK 303

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
              +++A   F EM+ K L P  +TF  L  GL ++  +   R +
Sbjct: 304 AGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDI 348



 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 118/257 (45%), Gaps = 12/257 (4%)

Query: 34  VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93
           V  YN++L  +CR            T R  E    EM   G+ P + +++ +++   +++
Sbjct: 1   VADYNIVLQSLCRAG---------DTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSN 51

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
                ++    + E+G  P V TY++++  LC  G +E+A  L G+M   G  P+  TY+
Sbjct: 52  DLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYS 111

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCV-PNMHSYNILIGMFMALNRMDMVREIWNDVK 212
                       + A +L ++M      V PN+ +YN  +      +      E+   ++
Sbjct: 112 VLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLR 171

Query: 213 GSGL--GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
              L   PD  +++ LI GLC+  +  EAC  F +MI  G +P  +T+  L  GL ++D 
Sbjct: 172 DGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADK 231

Query: 271 LRTWRRLKKKLDEESIT 287
           +     + + + ++ +T
Sbjct: 232 MERAHAMIESMVDKGVT 248


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 143/281 (50%), Gaps = 11/281 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G CK    D AE    +MI+ GV+PN+ TYN L++G           ++++ +R
Sbjct: 241 YTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIG------KWKEVVR 294

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + +EM   G +P+  ++  +L+   +  + + +    + M  KGI P+V TY  ++
Sbjct: 295 ----MLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIML 350

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               + G + +  +LL  MV NG+ P+   +N FF  Y      + AM ++ +M++ GL 
Sbjct: 351 HGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLS 410

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  SY  LI     L R+D     +N +   G+ PD+  ++ L++GLC   KW++  +
Sbjct: 411 -PDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEE 469

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
            F EM+  G+ P  V F T+   L +   +   +RL   ++
Sbjct: 470 LFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIE 510



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 142/313 (45%), Gaps = 28/313 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER----- 55
           +++SL+YG C +++ +  E    EM+  G+ PN+V +N +L  +C+   +   +R     
Sbjct: 450 VFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSI 509

Query: 56  --------------------FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                  TI  A K+ + M   G++PD  S++ +LH Y +A + 
Sbjct: 510 ECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRI 569

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +      M   GI P V TY++++  L    R  +A+EL   M+ +G      TYN  
Sbjct: 570 DSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNII 629

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                     + A+K+++ +   GL + N+ ++NI+IG  +   R +   +++  +  +G
Sbjct: 630 LNGLCKSNCVDEAIKMFQNLCSKGLQL-NIITFNIMIGALLKGGRKEDAMDLFAAIPANG 688

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ-SDMLRTW 274
           L  ++ +Y +++  L E+   +E    F  M + G  P       L R L+   D+ R  
Sbjct: 689 LVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAG 748

Query: 275 RRLKKKLDEESIT 287
             L  KLDE + +
Sbjct: 749 AYL-SKLDERNFS 760



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 132/288 (45%), Gaps = 11/288 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+   CK  R   A  F   MI +G++P+V TY ++L+G   + +L  SE  +    
Sbjct: 311 YGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGAL--SEMHD---- 364

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + + M   GI P+   F+I    Y++      ++D  N M+++G+ P   +Y +++
Sbjct: 365 ----LLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALI 420

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR++DAE    +M+  GV P    ++                +L+ +M   G+ 
Sbjct: 421 DALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIH 480

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+  +N ++       R+   + + + ++  G+ PD+ SY  LI G C      EA +
Sbjct: 481 -PNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASK 539

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
               M+  GL P   ++ TL  G  ++  + +     +K+    IT G
Sbjct: 540 LLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPG 587



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 132/292 (45%), Gaps = 14/292 (4%)

Query: 5   LIYGWCKINRIDMA-ERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           L+ G C   R+  A +  L  M E G  P+ V+YN+LL G+C        +R E+ +   
Sbjct: 135 LLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNE------KRAEEALELL 188

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             + D+ +V    P+V S+S V++ +    Q     +    M ++GI P V TY++V+  
Sbjct: 189 HMMADD-QVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDG 247

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC     + AE +  +M+ NGV P+ +TYNC    Y         +++  +M   G   P
Sbjct: 248 LCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGG-PKP 306

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N  +Y  L+       R    R  ++ + G G+ P + +Y +++HG   K    E     
Sbjct: 307 NCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLL 366

Query: 244 VEMIEKGLLPQKVTFETLYR-----GLIQSDMLRTWRRLKKKLDEESITFGS 290
             M+  G+ P    F   +      G+I   M    +  ++ L  +++++G+
Sbjct: 367 NLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGA 418



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 138/321 (42%), Gaps = 54/321 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L++G+CK  RID A     +M+  G+ P VVTYN +L+G+ +      ++     + 
Sbjct: 556 YNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMI 615

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           N                         A K+F  +  +G++ ++ +F+I++    +  + +
Sbjct: 616 NSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKE 675

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++D    +   G+   V TY  VV+ L   G +E+ + L   M +NG  P+++  N   
Sbjct: 676 DAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALV 735

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA----------------LN- 199
           +    R D + A     ++ E    V    + ++LI +F +                LN 
Sbjct: 736 RRLLHRGDISRAGAYLSKLDERNFSV-EASTTSMLISIFSSDEYQHHAKSLPKKYRILNE 794

Query: 200 -----------RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
                      R+D    ++ ++   GL PD+ +Y  ++HGL +  ++ EA + ++ MI 
Sbjct: 795 ANSSALIKKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMIN 854

Query: 249 KGLLPQKVTFETLYRGLIQSD 269
                   T+  +  GL +S+
Sbjct: 855 SRTQMNIYTYNIILNGLCKSN 875



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 138/304 (45%), Gaps = 13/304 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI  +C++  ++      G +++ G   + +  N LLNG+C        +R  + + 
Sbjct: 97  YSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLC------DGKRVGEAM- 149

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGI--CP-TVATYS 118
             + +   M   G  PD  S++I+L       + + +L+ L+ M +  +  CP  V +YS
Sbjct: 150 --DVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYS 207

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +V+    + G+++    L  EM+  G+ P   TY          +  + A  +++QM ++
Sbjct: 208 TVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDN 267

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  PN+ +YN LI  ++++ +   V  +  ++   G  P+  +Y  L++ LC+  + +E
Sbjct: 268 GV-KPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCRE 326

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
           A  +F  MI KG+ P   T+  +  G      L     L   +    I+      N  F 
Sbjct: 327 ARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFS 386

Query: 299 PYRR 302
            Y +
Sbjct: 387 AYAK 390



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 113/272 (41%), Gaps = 51/272 (18%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH-------QPQLSLDKLNFMKEK---GIC 111
           +A K+FDE+        V +F+ +L   SR+        + +  +   N M       + 
Sbjct: 32  DALKLFDELLPHARPASVVAFNHLLAAVSRSSGRRSTTSESETVVSLFNRMVRDCYIKVA 91

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVR--------------NGVC----------- 146
           P   TYS ++ C C  G +E      G +++              NG+C           
Sbjct: 92  PNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAMDV 151

Query: 147 -----------PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL--CVPNMHSYNILIG 193
                      P   +YN   K     K A  A++L   M +D +  C PN+ SY+ +I 
Sbjct: 152 LLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVIN 211

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
            F    ++D    ++ ++   G+ PD+ +YT +I GLC+ Q +  A   F +MI+ G+ P
Sbjct: 212 GFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKP 271

Query: 254 QKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
              T+  L  G +    +  W+ + + L+E S
Sbjct: 272 NIDTYNCLIHGYLS---IGKWKEVVRMLEEMS 300



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 3/185 (1%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M  KG+ P V TY++++  L   GR  +A+EL   M+ +    +  TYN           
Sbjct: 817 MLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNC 876

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
            + A K+++ +   GL + N+ ++NI+IG  +   R +   +++  +  +GL PD+ +Y 
Sbjct: 877 VDEAFKMFQSLCSKGLQL-NIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYR 935

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ-SDMLRTWRRLKKKLDE 283
           ++   L E+   +E    F+ M + G          L R L+Q  D+ R    L  KLDE
Sbjct: 936 LVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRAGAYL-SKLDE 994

Query: 284 ESITF 288
           ++ + 
Sbjct: 995 KNFSL 999



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 69/349 (19%), Positives = 134/349 (38%), Gaps = 60/349 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA---------SLHP 52
           Y  ++ G CK N +D A +    +  +G++ N++T+N+++  + +           +  P
Sbjct: 626 YNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIP 685

Query: 53  SERF----------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIV----LHV--YS 90
           +                   E ++   + +F  M   G  P+    + +    LH    S
Sbjct: 686 ANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDIS 745

Query: 91  RAHQPQLSLDKLNFMKEKGICPTV-------------------------ATYSSVVKCLC 125
           RA      LD+ NF  E      +                         A  S+++K   
Sbjct: 746 RAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIK--- 802

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
              RI+DA  L  EM+  G+ P   TYN            + A +LY  M      + N+
Sbjct: 803 KARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQM-NI 861

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
           ++YNI++      N +D   +++  +   GL  ++ ++ ++I  L +  + ++A   F  
Sbjct: 862 YTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAA 921

Query: 246 MIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           +   GL+P  VT+  +   LI+   L  +  L   +++      S   N
Sbjct: 922 IPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLN 970



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 10/176 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++++G  +  R   A+     MI    + N+ TYN++LNG+C+             + 
Sbjct: 829 YNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGLCK----------SNCVD 878

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F  +  +G++ ++ +F+I++    +  + + ++D    +   G+ P V TY  V 
Sbjct: 879 EAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVA 938

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + L   G +E+ + L   M ++G    +   N   +    R D + A     ++ E
Sbjct: 939 ENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRAGAYLSKLDE 994


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 150/312 (48%), Gaps = 27/312 (8%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKTI 60
            Y+S+I G CK   +  A   L EM++ G +PNV T+  L++G+C++     + R F K I
Sbjct: 904  YSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLI 963

Query: 61   RN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
            R+                         AE +F+ M+ +G+ P+  +++ ++  + +A   
Sbjct: 964  RSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNF 1023

Query: 96   QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
              + + +  M  +G  P   TY+S+V  LC  GR E+A +LL    +N +     TY   
Sbjct: 1024 SKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTIL 1083

Query: 156  FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              E   R D N A+    +M + G   P++H Y  LI  F   N M    +++++V   G
Sbjct: 1084 ISEQCKRADMNQALVFLNKMFKVGF-QPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLG 1142

Query: 216  LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
            L P  ++YT +I G C ++K   A ++F +M + G  P  +++  L  GL +   L   R
Sbjct: 1143 LAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEAR 1202

Query: 276  RLKKKLDEESIT 287
            +L   + ++ ++
Sbjct: 1203 QLYDTMIDKGLS 1214



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 124/264 (46%), Gaps = 14/264 (5%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            YT+LI G CK      A   +  M   G  PN  TYN +++G+C+R       R E+  +
Sbjct: 1010 YTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRG------RAEEAFK 1063

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 F       IE D  +++I++    +      +L  LN M + G  P +  Y++++
Sbjct: 1064 LLNTGFQNQ----IEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLI 1119

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               C    ++D+E+L  E+++ G+ P+ ETY      Y   K  + A+K +++M + G C
Sbjct: 1120 AAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHG-C 1178

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             P+  SY  LI      +R+D  R++++ +   GL P   +   L +  C+ + +  A  
Sbjct: 1179 APDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASA-M 1237

Query: 242  YFVEMIEKGLLPQKVTFETLYRGL 265
              +E + K L  +  T  TL R L
Sbjct: 1238 VILERLNKKLWIR--TVHTLIRKL 1259



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 10/251 (3%)

Query: 15   IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
            ++ A     EM  RGV P+  TY  ++ G CR  ++  ++R+            EM  RG
Sbjct: 812  VEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRW----------ICEMMERG 861

Query: 75   IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
               D  + ++++  +        ++   + + + G+ P +  YSS++  LC  G ++ A 
Sbjct: 862  FVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAF 921

Query: 135  ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
            ELL EMV+NG  P+  T+         +     A +L+ ++       PN+H+Y  +I  
Sbjct: 922  ELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISG 981

Query: 195  FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
            +    ++     ++  +K  GL P+ ++YT LI G C+   + +A +    M  +G  P 
Sbjct: 982  YCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPN 1041

Query: 255  KVTFETLYRGL 265
              T+ ++  GL
Sbjct: 1042 TCTYNSIVDGL 1052



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/228 (19%), Positives = 103/228 (45%), Gaps = 2/228 (0%)

Query: 60   IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
            ++ A  +  +MR +G+       + ++ V +     + + +  + M  +G+ P   TY  
Sbjct: 777  LKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKY 836

Query: 120  VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
            ++   C  G + +A+  + EM+  G      T       +  +   N A+  + ++ + G
Sbjct: 837  IIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMG 896

Query: 180  LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            L  PN+ +Y+ +I        +    E+  ++  +G  P++ ++T LIHGLC+K   + A
Sbjct: 897  LS-PNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERA 955

Query: 240  CQYFVEMI-EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             + F+++I      P   T+  +  G  + + L     L +++ E+ +
Sbjct: 956  FRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGL 1003



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 1/194 (0%)

Query: 88  VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
           V++   + + ++D +  M+ +G+  T    + ++        +E A  +  EM   GV P
Sbjct: 770 VFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYP 829

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
            + TY      Y    +   A +   +M E G  V N  +  ++I  F   + ++     
Sbjct: 830 DSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNA-TLTLIITAFCEKSLVNRAVWF 888

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           ++ V   GL P+L +Y+ +I GLC++   K+A +   EM++ G  P   T  +L  GL +
Sbjct: 889 FHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCK 948

Query: 268 SDMLRTWRRLKKKL 281
                   RL  KL
Sbjct: 949 KGWTERAFRLFLKL 962



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/269 (20%), Positives = 97/269 (36%), Gaps = 84/269 (31%)

Query: 1    MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
            +YT+LI  +C+ N +  +E+   E+I+ G+ P   TY  ++ G CR          EK +
Sbjct: 1114 LYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCR----------EKKV 1163

Query: 61   RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              A K F +M   G  PD  S                                   Y ++
Sbjct: 1164 SLAVKFFQKMSDHGCAPDSIS-----------------------------------YGAL 1188

Query: 121  VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
            +  LC   R+++A +L   M+  G+ P   T      EY   +D   AM +  ++     
Sbjct: 1189 ISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLN---- 1244

Query: 181  CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
                                    +++W           + +   LI  LC ++K   A 
Sbjct: 1245 ------------------------KKLW-----------IRTVHTLIRKLCCEKKVALAA 1269

Query: 241  QYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
             +F ++++K +   +VT        I+S+
Sbjct: 1270 LFFHKLLDKEVNVDRVTLAAFNTACIESN 1298


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 135/255 (52%), Gaps = 11/255 (4%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           C+ ++   A  FLG+M++ G EP++VT+  LL+G C              I +A  +FD+
Sbjct: 128 CRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCH----------WNRIEDALALFDQ 177

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           +   G  P+V +++ ++H   +      +++  N M + GI P V TY+S+V  LC  GR
Sbjct: 178 IVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGR 237

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
             DA  LL +M++ G+ P+  T+      +        A +LY+ M +  +  P++ +Y 
Sbjct: 238 WSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSV-YPDVFTYT 296

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            LI       R+D  R+++  ++ +G  P+  +YT LIHG C+ ++ ++  + F EM +K
Sbjct: 297 ALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQK 356

Query: 250 GLLPQKVTFETLYRG 264
           GL+   +T+  L +G
Sbjct: 357 GLVANTITYTVLIQG 371



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 144/318 (45%), Gaps = 46/318 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI+  CK   ++ A     +M + G+ PNVVTYN L++G+C                
Sbjct: 190 YTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRW----------S 239

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  +M  RGI+P+V +F+ ++  + +  +   + +    M +  + P V TY++++
Sbjct: 240 DAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALI 299

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+ GR+++A ++   M  NG  P+  TY      +   K      K++ +M + GL 
Sbjct: 300 NGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGL- 358

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML--------------- 226
           V N  +Y +LI  +  + R D+ +E++N +      PD+ +Y +L               
Sbjct: 359 VANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALM 418

Query: 227 --------------------IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
                               I G+C+  K ++A   F  +  KG+ P  +T+ T+  G  
Sbjct: 419 IFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFC 478

Query: 267 QSDMLRTWRRLKKKLDEE 284
           +   +     L KK+ E+
Sbjct: 479 RRGFIHEADALFKKMKED 496



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 141/299 (47%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T L+    K+ R D+      +M   G+ P + T N+++N VCR  S  P         
Sbjct: 85  FTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCR--SSQPCR------- 135

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A     +M   G EPD+ +F+ +LH +   ++ + +L   + +   G  P V TY++++
Sbjct: 136 -ASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLI 194

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLC    +  A E+  +M  NG+ P+  TYN            + A  L R M + G+ 
Sbjct: 195 HCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGI- 253

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ ++  LI  F+ + ++   +E++  +    + PD+ +YT LI+GLC   +  EA Q
Sbjct: 254 QPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQ 313

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
            F  M   G  P +VT+ TL  G  +S  +    ++     +K L   +IT+    Q Y
Sbjct: 314 MFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGY 372



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 120/254 (47%), Gaps = 11/254 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI  + K+ +I  A+     MI+  V P+V TY  L+NG+C    L           
Sbjct: 260 FTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLD---------- 309

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F  M   G  P+  +++ ++H + ++ + +        M +KG+     TY+ ++
Sbjct: 310 EARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLI 369

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  GR + A+E+  +M      P   TYN              A+ +++ M++  + 
Sbjct: 370 QGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMD 429

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N+ +Y I+I     + +++   +++  +   G+ P++ +YT +I G C +    EA  
Sbjct: 430 I-NIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADA 488

Query: 242 YFVEMIEKGLLPQK 255
            F +M E G LP +
Sbjct: 489 LFKKMKEDGFLPNE 502



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 99/210 (47%), Gaps = 1/210 (0%)

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           P +  F+ +L V ++  +  + +     M+  GI P + T + V+ C+C   +   A   
Sbjct: 80  PSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCF 139

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
           LG+M++ G  P   T+      +        A+ L+ Q+   G   PN+ +Y  LI    
Sbjct: 140 LGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGF-RPNVVTYTTLIHCLC 198

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
               ++   EI+N +  +G+ P++ +Y  L+ GLCE  +W +A     +M+++G+ P  +
Sbjct: 199 KNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVI 258

Query: 257 TFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           TF  L    ++   +   + L K + + S+
Sbjct: 259 TFTALIDAFVKVGKIMEAKELYKVMIQMSV 288


>gi|15225055|ref|NP_181456.1| lateral organ junction protein [Arabidopsis thaliana]
 gi|75100007|sp|O80958.1|PP194_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g39230, mitochondrial; AltName: Full=Protein LATERAL
           ORGAN JUNCTION; Flags: Precursor
 gi|3402682|gb|AAC28985.1| unknown protein [Arabidopsis thaliana]
 gi|330254554|gb|AEC09648.1| lateral organ junction protein [Arabidopsis thaliana]
          Length = 867

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 138/280 (49%), Gaps = 12/280 (4%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           +CK  ++D A  FL  M ++G+EPNVV YN ++   CR           K +  A  +F 
Sbjct: 459 FCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRM----------KNMDLARSIFS 508

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
           EM  +G+EP+  ++SI++  + +    Q + D +N M           Y++++  LC  G
Sbjct: 509 EMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVG 568

Query: 129 RIEDAEELLGEMVRNG-VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
           +   A+E+L  +++      S  +YN     +    D + A++ YR+M E+G   PN+ +
Sbjct: 569 QTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKS-PNVVT 627

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           +  LI  F   NRMD+  E+ +++K   L  DL +Y  LI G C+K   K A   F E+ 
Sbjct: 628 FTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELP 687

Query: 248 EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           E GL+P    + +L  G      +     L KK+  + I+
Sbjct: 688 ELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGIS 727



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 141/312 (45%), Gaps = 27/312 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR-------------- 47
           Y +++   C++  +D+A     EM+E+G+EPN  TY++L++G  +               
Sbjct: 487 YNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMN 546

Query: 48  -ASLHPSERFEKTIRNA-----------EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
            ++   +E    TI N            E + + ++ +      TS++ ++  + +    
Sbjct: 547 ASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDT 606

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +++    M E G  P V T++S++   C   R++ A E+  EM    +      Y   
Sbjct: 607 DSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGAL 666

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +  + D   A  L+ ++ E GL +PN+  YN LI  F  L +MD   +++  +   G
Sbjct: 667 IDGFCKKNDMKTAYTLFSELPELGL-MPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDG 725

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           +  DL +YT +I GL +      A   + E+++ G++P ++    L  GL +        
Sbjct: 726 ISCDLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKAS 785

Query: 276 RLKKKLDEESIT 287
           ++ +++ ++ +T
Sbjct: 786 KMLEEMKKKDVT 797



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 126/266 (47%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G+ K+   D A     EM E G  PNVVT+  L+NG C+      S R +  + 
Sbjct: 593 YNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCK------SNRMDLAL- 645

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++  EM+   ++ D+ ++  ++  + + +  + +    + + E G+ P V+ Y+S++
Sbjct: 646 ---EMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLI 702

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               + G+++ A +L  +MV +G+     TY           + N A  LY ++ + G+ 
Sbjct: 703 SGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSELLDLGI- 761

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+   + +L+       +     ++  ++K   + P++  Y+ +I G   +    EA +
Sbjct: 762 VPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLYSTVIAGHHREGNLNEAFR 821

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
              EM+EKG++     F  L  G ++
Sbjct: 822 LHDEMLEKGIVHDDTVFNLLVSGRVE 847



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 116/278 (41%), Gaps = 18/278 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           +++  +   CK   + MA   L EM  + GV  +  TY  ++    +          E  
Sbjct: 276 LFSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVK----------EGN 325

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +  A +V DEM   GI   V + + +++ Y + ++   +LD  N M+E+G+ P    +S 
Sbjct: 326 MEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSV 385

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +V+  C    +E A E    M    + PS+   +   +     +    A++++    E  
Sbjct: 386 MVEWFCKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFESW 445

Query: 180 LCVPNMHSY--NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
           +     H +  N +  +F    ++D        ++  G+ P++  Y  ++   C  +   
Sbjct: 446 IA----HGFMCNKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMD 501

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQS-DMLRTW 274
            A   F EM+EKGL P   T+  L  G  ++ D    W
Sbjct: 502 LARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAW 539



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 105/261 (40%), Gaps = 47/261 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+  + +  R+D A    G M++R V P V   N +L+ + R             I 
Sbjct: 172 FNYLLNAYIRNKRMDYAVDCFGLMVDRKVVPFVPYVNNVLSSLVR----------SNLID 221

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A++++++M + G+  D  +  +++    R  +P+ ++     +  +G  P    +S  V
Sbjct: 222 EAKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEAVKIFRRVMSRGAEPDGLLFSLAV 281

Query: 122 KCLCSCGRIEDAEELLGEMV-RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  C    +  A +LL EM  + GV  S ETY                            
Sbjct: 282 QAACKTPDLVMALDLLREMRGKLGVPASQETYTS-------------------------- 315

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
                     +I  F+    M+    + +++ G G+   + + T L++G C+  +  +A 
Sbjct: 316 ----------VIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKAL 365

Query: 241 QYFVEMIEKGLLPQKVTFETL 261
             F  M E+GL P KV F  +
Sbjct: 366 DLFNRMEEEGLAPDKVMFSVM 386



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/251 (18%), Positives = 110/251 (43%), Gaps = 9/251 (3%)

Query: 38  NVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
           N+L+  V    +L P+      + ++++        G E    +F+ +L+ Y R  +   
Sbjct: 135 NLLVMFVSNNPTLIPNVMVNNLVDSSKRF-------GFELTPRAFNYLLNAYIRNKRMDY 187

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           ++D    M ++ + P V   ++V+  L     I++A+E+  +MV  GV     T     +
Sbjct: 188 AVDCFGLMVDRKVVPFVPYVNNVLSSLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMR 247

Query: 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS-GL 216
                +    A+K++R++   G   P+   +++ +        + M  ++  +++G  G+
Sbjct: 248 ASLRERKPEEAVKIFRRVMSRG-AEPDGLLFSLAVQAACKTPDLVMALDLLREMRGKLGV 306

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
               ++YT +I    ++   +EA +   EM+  G+    +   +L  G  + + L     
Sbjct: 307 PASQETYTSVIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALD 366

Query: 277 LKKKLDEESIT 287
           L  +++EE + 
Sbjct: 367 LFNRMEEEGLA 377


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 139/285 (48%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L+   CK  +++ A     E+I +G+ PNVV+YN ++ G CR+ +++          
Sbjct: 370 FNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINA--------- 420

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KV+ EM   G  P+  +F+I++  Y +    + +    + MK+  I PT  T   ++
Sbjct: 421 -ACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIII 479

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC  GR  +  +L  + V  G  P+   YN     +    + N A  +YR+M E G+ 
Sbjct: 480 KGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGI- 538

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y  LI  F   N +D+  ++ ND+K  GL  D+ +Y  LI G C+++  K A +
Sbjct: 539 TPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHE 598

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              E+   GL P +  + ++  G    + +     L KK+  E I
Sbjct: 599 LLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGI 643



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 141/285 (49%), Gaps = 12/285 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           TSL+ G+C    +  A   + E+ E G+ PN VTY+VL++G C+  ++  +  F      
Sbjct: 267 TSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEF------ 320

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
               + EM+ +GI   V S + +L  Y +    Q +    N   E G+   V T+++++ 
Sbjct: 321 ----YSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGL-ANVFTFNTLLS 375

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  G++ +A  L  E++  G+ P+  +YN     +  + + N A K+Y++M ++G   
Sbjct: 376 WLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGF-T 434

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN  ++ IL+  +     ++    I++ +K + + P   +  ++I GLC+  +  E    
Sbjct: 435 PNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDL 494

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           F + + +G +P  + + T+  G I+   +     + +++ E  IT
Sbjct: 495 FNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGIT 539



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 132/320 (41%), Gaps = 46/320 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G C+ + I+ A +   EM++ G  PN VT+ +L++G  ++            I 
Sbjct: 405 YNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGD----------IE 454

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA  +F  M+   I P  T+  I++    +A +     D  N    +G  PT   Y++++
Sbjct: 455 NAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTII 514

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G I  A  +  EM   G+ PS  TY      +    + + A+KL   MK  GL 
Sbjct: 515 DGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLK 574

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP----------------------- 218
           + ++ +Y  LI  F     M    E+ N+++G+GL P                       
Sbjct: 575 M-DIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAID 633

Query: 219 ------------DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
                       DL +YT LI GL +  +   A     EM+ KG+LP       L  GL 
Sbjct: 634 LYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLC 693

Query: 267 QSDMLRTWRRLKKKLDEESI 286
                   R++ + ++ +++
Sbjct: 694 NKGQFENARKILEDMNGKNM 713



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 132/278 (47%), Gaps = 13/278 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +I G CK  R         + + +G  P  + YN +++G  +          E  I  A 
Sbjct: 478 IIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIK----------EGNINLAS 527

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            V+ EM   GI P   +++ ++  + + +   L+L  LN MK KG+   +  Y +++   
Sbjct: 528 NVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGF 587

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP- 183
           C    ++ A ELL E+   G+ P+   YN     ++   +   A+ LY++M  +G  +P 
Sbjct: 588 CKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEG--IPC 645

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++ +Y  LI   +   R+    +I  ++   G+ PD  ++T+LI+GLC K +++ A +  
Sbjct: 646 DLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKIL 705

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            +M  K ++P  + + TL  G  +   L+   RL  ++
Sbjct: 706 EDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEM 743



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 114/272 (41%), Gaps = 27/272 (9%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVC---------------RRASLHPSERF------ 56
           AE+   +   RGVE +   Y++ ++ +C               R A   P E        
Sbjct: 177 AEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVIT 236

Query: 57  ----EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP 112
               E  +  A ++ D+M   G   ++   + ++  Y      + +L  +N + E G+ P
Sbjct: 237 ACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVP 296

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
              TYS ++   C  G IE A E   EM   G+  S  + N   + Y   +    A  ++
Sbjct: 297 NKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMF 356

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
               E GL   N+ ++N L+       +M+    +W++V   G+ P++ SY  +I G C 
Sbjct: 357 NDALESGL--ANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCR 414

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           K     AC+ + EM++ G  P  VTF  L  G
Sbjct: 415 KDNINAACKVYKEMLDNGFTPNAVTFTILMDG 446



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 2/217 (0%)

Query: 45  CRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNF 104
           C +    P +  E  I  AE+ F + + RG+E D  ++SI +H+         +L  L  
Sbjct: 159 CTKLYNFPLDIQEGNILEAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLRE 218

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M+  G  P   T++SV+      G + +A  L  +MV  G   +        K Y  + +
Sbjct: 219 MRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGN 278

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
              A+ L  ++ E GL VPN  +Y++LI        ++   E ++++K  G+   + S  
Sbjct: 279 LRSALVLVNEISESGL-VPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLN 337

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            ++ G  + Q W+ A   F + +E G L    TF TL
Sbjct: 338 SILEGYLKCQSWQNAFTMFNDALESG-LANVFTFNTL 373



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 10/153 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y S+I G+  +N ++ A     +M+  G+  ++ TY  L++G+ +   L          
Sbjct: 614 IYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRL---------- 663

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +  EM  +GI PD  + +++++      Q + +   L  M  K + P+V  Y+++
Sbjct: 664 LYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTL 723

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           +      G +++A  L  EM+  G+ P   TY+
Sbjct: 724 IAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYD 756



 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNG 43
           +Y +LI G  K   +  A R   EM++RG+ P+ +TY++L+NG
Sbjct: 719 IYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNG 761


>gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 512

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 134/265 (50%), Gaps = 14/265 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GW +   +       GEM + G EP+VV Y +++N  C+      ++++++ +R
Sbjct: 237 YTILLEGWGQELNLLRVNEVYGEMKDEGFEPDVVAYGIIINAYCK------AKKYDEAVR 290

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                F+EM  R  +P    F  +++      +   +L+     K  G      TY+++V
Sbjct: 291 ----FFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALV 346

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R+EDA + + EM   G+ P+A TY+         +    A ++Y++M     C
Sbjct: 347 GAYCWSQRMEDAFKTVDEMRSKGIGPNARTYDIILHHLIRMQRTKEAYEVYQKMS----C 402

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +Y I++ MF    R+DM  +IW+++KG G+ P +  ++ LI  LC + K  EAC+
Sbjct: 403 EPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACE 462

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLI 266
           YF EM++ G+ P    F  L + L+
Sbjct: 463 YFNEMLDVGIRPPGHLFSRLKQTLL 487



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 112/231 (48%), Gaps = 16/231 (6%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN----FMKEKGICPT 113
           + + +A+KVFD+M+ +  EPD+ S++I+L  + +    +L+L ++N     MK++G  P 
Sbjct: 213 RNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQ----ELNLLRVNEVYGEMKDEGFEPD 268

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           V  Y  ++   C   + ++A     EM +    PS   +          K  N A++ + 
Sbjct: 269 VVAYGIIINAYCKAKKYDEAVRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFE 328

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           + K  G  +    +YN L+G +    RM+   +  ++++  G+GP+  +Y +++H L   
Sbjct: 329 RSKSSGFPL-EAPTYNALVGAYCWSQRMEDAFKTVDEMRSKGIGPNARTYDIILHHLIRM 387

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML----RTWRRLKKK 280
           Q+ KEA + + +M      P   T+E + R     + L    + W  +K K
Sbjct: 388 QRTKEAYEVYQKM---SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGK 435



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 99/242 (40%), Gaps = 51/242 (21%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPN---------------------------- 33
           Y  +I  +CK  + D A RF  EM +R  +P+                            
Sbjct: 272 YGIIINAYCKAKKYDEAVRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSK 331

Query: 34  -------VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
                    TYN L+   C       S+R E    +A K  DEMR +GI P+  ++ I+L
Sbjct: 332 SSGFPLEAPTYNALVGAYCW------SQRME----DAFKTVDEMRSKGIGPNARTYDIIL 381

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           H   R  + + + +    + +K  C PTV+TY  +V+  C+  R++ A ++  EM   GV
Sbjct: 382 HHLIRMQRTKEAYE----VYQKMSCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGV 437

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P    ++            + A + + +M + G+  P  H ++ L    +   R D V 
Sbjct: 438 LPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPG-HLFSRLKQTLLDEGRKDKVA 496

Query: 206 EI 207
           ++
Sbjct: 497 DL 498



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 22/163 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR------------RAS 49
           Y +L+  +C   R++ A + + EM  +G+ PN  TY+++L+ + R            + S
Sbjct: 342 YNALVGAYCWSQRMEDAFKTVDEMRSKGIGPNARTYDIILHHLIRMQRTKEAYEVYQKMS 401

Query: 50  LHPS-ERFEKTIR---NAE------KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
             P+   +E  +R   N E      K++DEM+ +G+ P +  FS ++      ++   + 
Sbjct: 402 CEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEAC 461

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR 142
           +  N M + GI P    +S + + L   GR +   +L  +M R
Sbjct: 462 EYFNEMLDVGIRPPGHLFSRLKQTLLDEGRKDKVADLAVKMDR 504



 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 35/193 (18%), Positives = 88/193 (45%), Gaps = 13/193 (6%)

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
           +KG   T + Y+++++ L    + +    L+ +M +  +  S +T+    + Y   +   
Sbjct: 123 QKGFKHTTSNYNALIESLGKIKQFKLIWNLVDDMKQKKLL-SKDTFALISRRYARARKVK 181

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            A+  + +M++ G  + +   +N ++ +      +   +++++ +K     PD+ SYT+L
Sbjct: 182 EAITAFHKMEDYGFKMES-SDFNRMLDILSKSRNVGDAQKVFDKMKKKRFEPDIKSYTIL 240

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           + G  ++       + + EM ++G  P  V +  +     ++          KK D E++
Sbjct: 241 LEGWGQELNLLRVNEVYGEMKDEGFEPDVVAYGIIINAYCKA----------KKYD-EAV 289

Query: 287 TFGSEFQNYHFKP 299
            F +E +  + KP
Sbjct: 290 RFFNEMEQRNCKP 302


>gi|115455503|ref|NP_001051352.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|14488357|gb|AAK63924.1|AC084282_5 unknown protein [Oryza sativa Japonica Group]
 gi|108711214|gb|ABF99009.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549823|dbj|BAF13266.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|125545804|gb|EAY91943.1| hypothetical protein OsI_13630 [Oryza sativa Indica Group]
 gi|125588003|gb|EAZ28667.1| hypothetical protein OsJ_12678 [Oryza sativa Japonica Group]
          Length = 484

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 143/266 (53%), Gaps = 12/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ GW +   +        EM++ G EP++VTY ++++ +C+      + R E+ +R
Sbjct: 207 YSILLEGWGRAPNLPKMREVYSEMLDAGCEPDIVTYGIMVDSLCK------TGRVEEAVR 260

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               V  +M  RG +P    +S+++H Y    + + ++     M++ GI P +  Y+++V
Sbjct: 261 ----VVQDMTSRGCQPTTYIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDIVVYNALV 316

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   + E+A  +L +M  +G+  ++ T+N            + A K++R+M +   C
Sbjct: 317 SAFCKAKKFENAFRVLNDMEGHGITTNSRTWNIILNHLISLGRDDEAYKVFRRMIK--CC 374

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y ++I MF   ++++M  ++W  ++     P + ++++LI+GLC+K++  +AC 
Sbjct: 375 QPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKREVSQACV 434

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +MIEKG+ P   TF  L + L++
Sbjct: 435 LLEDMIEKGIRPPGSTFGKLRQLLLK 460



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 125/291 (42%), Gaps = 46/291 (15%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           + +  ++D A      M + GV PN+  +N LL  +C+           K +R A+++FD
Sbjct: 145 YARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLGALCK----------SKNVRKAQEIFD 194

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
           +M  R   PD  ++SI+L  + RA       +  + M + G  P + TY  +V  LC  G
Sbjct: 195 KMNSR-FSPDAKTYSILLEGWGRAPNLPKMREVYSEMLDAGCEPDIVTYGIMVDSLCKTG 253

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           R+E+A  ++ +M   G  P+   Y+     Y        A+  +  M++DG+ VP++  Y
Sbjct: 254 RVEEAVRVVQDMTSRGCQPTTYIYSVLVHTYGVEMRIEDAVATFLDMEKDGI-VPDIVVY 312

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLG------------------------------- 217
           N L+  F    + +    + ND++G G+                                
Sbjct: 313 NALVSAFCKAKKFENAFRVLNDMEGHGITTNSRTWNIILNHLISLGRDDEAYKVFRRMIK 372

Query: 218 ---PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
              PD D+YTM+I   CE  K + A + +  M  K  LP   TF  L  GL
Sbjct: 373 CCQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTFSVLINGL 423



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 104/217 (47%), Gaps = 2/217 (0%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           +V +F I++  Y+RA +   ++   N M++ G+ P +A ++S++  LC    +  A+E+ 
Sbjct: 134 NVETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIF 193

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            +M  +   P A+TY+   + +    +     ++Y +M + G C P++ +Y I++     
Sbjct: 194 DKM-NSRFSPDAKTYSILLEGWGRAPNLPKMREVYSEMLDAG-CEPDIVTYGIMVDSLCK 251

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
             R++    +  D+   G  P    Y++L+H    + + ++A   F++M + G++P  V 
Sbjct: 252 TGRVEEAVRVVQDMTSRGCQPTTYIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDIVV 311

Query: 258 FETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           +  L     ++       R+   ++   IT  S   N
Sbjct: 312 YNALVSAFCKAKKFENAFRVLNDMEGHGITTNSRTWN 348



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 84/168 (50%), Gaps = 17/168 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +L+  +CK  + + A R L +M   G+  N  T+N++LN +    SL   +      
Sbjct: 311 VYNALVSAFCKAKKFENAFRVLNDMEGHGITTNSRTWNIILNHLI---SLGRDD------ 361

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A KVF  M ++  +PD  ++++++ ++    + +++L    +M+ K   P++ T+S +
Sbjct: 362 -EAYKVFRRM-IKCCQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTFSVL 419

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY----NCFFKEYRGRKD 164
           +  LC    +  A  LL +M+  G+ P   T+        KE  GRKD
Sbjct: 420 INGLCDKREVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKE--GRKD 465


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 139/285 (48%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L+   CK  +++ A     E+I +G+ PNVV+YN ++ G CR+ +++          
Sbjct: 252 FNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINA--------- 302

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KV+ EM   G  P+  +F+I++  Y +    + +    + MK+  I PT  T   ++
Sbjct: 303 -ACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIII 361

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC  GR  +  +L  + V  G  P+   YN     +    + N A  +YR+M E G+ 
Sbjct: 362 KGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGI- 420

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y  LI  F   N +D+  ++ ND+K  GL  D+ +Y  LI G C+++  K A +
Sbjct: 421 TPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHE 480

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              E+   GL P +  + ++  G    + +     L KK+  E I
Sbjct: 481 LLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGI 525



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 141/285 (49%), Gaps = 12/285 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           TSL+ G+C    +  A   + E+ E G+ PN VTY+VL++G C+  ++  +  F      
Sbjct: 149 TSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEF------ 202

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
               + EM+ +GI   V S + +L  Y +    Q +    N   E G+   V T+++++ 
Sbjct: 203 ----YSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGL-ANVFTFNTLLS 257

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  G++ +A  L  E++  G+ P+  +YN     +  + + N A K+Y++M ++G   
Sbjct: 258 WLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGF-T 316

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN  ++ IL+  +     ++    I++ +K + + P   +  ++I GLC+  +  E    
Sbjct: 317 PNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDL 376

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           F + + +G +P  + + T+  G I+   +     + +++ E  IT
Sbjct: 377 FNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGIT 421



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 132/320 (41%), Gaps = 46/320 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G C+ + I+ A +   EM++ G  PN VT+ +L++G  ++            I 
Sbjct: 287 YNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGD----------IE 336

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA  +F  M+   I P  T+  I++    +A +     D  N    +G  PT   Y++++
Sbjct: 337 NAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTII 396

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G I  A  +  EM   G+ PS  TY      +    + + A+KL   MK  GL 
Sbjct: 397 DGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLK 456

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP----------------------- 218
           + ++ +Y  LI  F     M    E+ N+++G+GL P                       
Sbjct: 457 M-DIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAID 515

Query: 219 ------------DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
                       DL +YT LI GL +  +   A     EM+ KG+LP       L  GL 
Sbjct: 516 LYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLC 575

Query: 267 QSDMLRTWRRLKKKLDEESI 286
                   R++ + ++ +++
Sbjct: 576 NKGQFENARKILEDMNGKNM 595



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 132/278 (47%), Gaps = 13/278 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +I G CK  R         + + +G  P  + YN +++G  +          E  I  A 
Sbjct: 360 IIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIK----------EGNINLAS 409

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            V+ EM   GI P   +++ ++  + + +   L+L  LN MK KG+   +  Y +++   
Sbjct: 410 NVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGF 469

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP- 183
           C    ++ A ELL E+   G+ P+   YN     ++   +   A+ LY++M  +G  +P 
Sbjct: 470 CKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEG--IPC 527

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++ +Y  LI   +   R+    +I  ++   G+ PD  ++T+LI+GLC K +++ A +  
Sbjct: 528 DLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKIL 587

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            +M  K ++P  + + TL  G  +   L+   RL  ++
Sbjct: 588 EDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEM 625



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 114/272 (41%), Gaps = 27/272 (9%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVC---------------RRASLHPSERF------ 56
           AE+   +   RGVE +   Y++ ++ +C               R A   P E        
Sbjct: 59  AEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVIT 118

Query: 57  ----EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP 112
               E  +  A ++ D+M   G   ++   + ++  Y      + +L  +N + E G+ P
Sbjct: 119 ACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVP 178

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
              TYS ++   C  G IE A E   EM   G+  S  + N   + Y   +    A  ++
Sbjct: 179 NKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMF 238

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
               E GL   N+ ++N L+       +M+    +W++V   G+ P++ SY  +I G C 
Sbjct: 239 NDALESGL--ANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCR 296

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           K     AC+ + EM++ G  P  VTF  L  G
Sbjct: 297 KDNINAACKVYKEMLDNGFTPNAVTFTILMDG 328



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 109/244 (44%), Gaps = 12/244 (4%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A     +M+  GV  +  T +V+L     RA L      E  I  AE+ F + + RG+E 
Sbjct: 24  ARELHNKMLLVGVTGDCFTLHVML-----RACLK-----EGNILEAEQHFLQAKARGVEL 73

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           D  ++SI +H+         +L  L  M+  G  P   T++SV+      G + +A  L 
Sbjct: 74  DQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLK 133

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            +MV  G   +        K Y  + +   A+ L  ++ E GL VPN  +Y++LI     
Sbjct: 134 DDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGL-VPNKVTYSVLIDGCCK 192

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
              ++   E ++++K  G+   + S   ++ G  + Q W+ A   F + +E G L    T
Sbjct: 193 NGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESG-LANVFT 251

Query: 258 FETL 261
           F TL
Sbjct: 252 FNTL 255



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 10/153 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y S+I G+  +N ++ A     +M+  G+  ++ TY  L++G+ +   L          
Sbjct: 496 IYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRL---------- 545

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +  EM  +GI PD  + +++++      Q + +   L  M  K + P+V  Y+++
Sbjct: 546 LYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTL 605

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           +      G +++A  L  EM+  G+ P   TY+
Sbjct: 606 IAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYD 638



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 1/190 (0%)

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           + P +   +I+L    R +    + +  N M   G+     T   +++     G I +AE
Sbjct: 1   MTPSIQCMNILLTAMVRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAE 60

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           +   +    GV    E Y+ F      + ++  A+ L R+M+  G   P     +++   
Sbjct: 61  QHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITAC 120

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
               N  + +R + +D+   G   +L   T L+ G C +   + A     E+ E GL+P 
Sbjct: 121 VKEGNVAEALR-LKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPN 179

Query: 255 KVTFETLYRG 264
           KVT+  L  G
Sbjct: 180 KVTYSVLIDG 189



 Score = 37.7 bits (86), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNG 43
           +Y +LI G  K   +  A R   EM++RG+ P+ +TY++L+NG
Sbjct: 601 IYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNG 643


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 139/296 (46%), Gaps = 16/296 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + ++I+G+ K   +  A     EM+++GV P+V TYN +++ +C+           + + 
Sbjct: 235 FNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCK----------ARAMD 284

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE V  +M  +G+EPD  +++ ++H YS +   + S      M  KG+ P   T+SS +
Sbjct: 285 KAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFM 344

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR +DAEE+   M   G  P   +Y+     Y           L+  M + G+ 
Sbjct: 345 SSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGI- 403

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V N H  NILI        MD    ++ +++G G+ P++ +Y+ LI   C   +  +A +
Sbjct: 404 VSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAME 463

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL-IQSDMLRT----WRRLKKKLDEESITFGSEF 292
            F +MI  G+ P    + +L  G  +  D+++        + K L   +I F S  
Sbjct: 464 KFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSI 519



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 127/265 (47%), Gaps = 12/265 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S++   CK   +D AE  L +M+++GVEP+ VTYN +++G     S H  E       
Sbjct: 270 YNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGY--SCSGHWKE------- 320

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            + K+F +M  +G+ PD  +FS  +    +  + + + +   +M  KG  P + +YS ++
Sbjct: 321 -SAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILL 379

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               + GR  D   L   M   G+  +    N     +  R   + AM ++ +M+  G+ 
Sbjct: 380 HGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGV- 438

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y+ LI  F  + R+    E ++ +   G+ P+   Y  LIHG C      +A +
Sbjct: 439 RPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKE 498

Query: 242 YFVEMIEKGL-LPQKVTFETLYRGL 265
           +  EM+ KGL  P  V F ++   L
Sbjct: 499 FISEMMSKGLHRPNIVFFSSIIHSL 523



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 119/251 (47%), Gaps = 10/251 (3%)

Query: 3   TSLIYGWCKINRIDMA-ERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           T+ +   C   R D A +  L  M E    P+ ++YN ++  +C         R ++ + 
Sbjct: 163 TTFLKCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLC------GDSRSQEALD 216

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             +++  E       PDV SF+ V+H + +  +   + +  N M +KG+ P V TY+S+V
Sbjct: 217 MVQRMAKEGG--RCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIV 274

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    ++ AE +L +MV  GV P   TYN     Y        + K++R+M   GL 
Sbjct: 275 DALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGL- 333

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+  +++  +       R     EI+  +   G  PD+ SY++L+HG   + ++ +   
Sbjct: 334 IPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNN 393

Query: 242 YFVEMIEKGLL 252
            F  M +KG++
Sbjct: 394 LFHSMADKGIV 404



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 136/327 (41%), Gaps = 62/327 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y++LI  +C++ R+  A     +MI  G+EPN   Y+ L++G C    L  ++ F     
Sbjct: 445 YSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMM 504

Query: 57  ---------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                E  + +A+ VF+ +   G  P + +F+ ++  Y    + 
Sbjct: 505 SKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKM 564

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + +   L+ M   GI P V T +++V   C  G+I+D   L  EM+   V P+  TYN  
Sbjct: 565 EKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIV 624

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNIL-------------IGMFMALNRMD 202
                     + A K++ +M + G  V ++ +Y IL             I +F  L  MD
Sbjct: 625 LDGLLRAGRTSAAKKMFHEMIDSGTAV-DIDTYKILLKGLCRNDLTDEAITLFHKLGAMD 683

Query: 203 ----------MV--------REIWND----VKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
                     M+        RE  ND    +  SGL P++ +Y ++I  L ++   +EA 
Sbjct: 684 CKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEAD 743

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQ 267
             F  M + G  P       + R L+Q
Sbjct: 744 TMFSSMEKSGCAPSSRLLNDIIRMLLQ 770



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 19/242 (7%)

Query: 30  VEP-NVVTYNVLLNGVCR--RASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
           V P  V TY +L++  CR  R  L P+  F   +  A          G++      +  L
Sbjct: 119 VAPLTVRTYGILMDCCCRARRPDLGPA--FVARLLRA----------GLKTGTIQATTFL 166

Query: 87  HVYSRAHQPQLSLDKL-NFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG- 144
                A +   ++D L + M E    P   +Y++V+K LC   R ++A +++  M + G 
Sbjct: 167 KCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGG 226

Query: 145 -VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
              P   ++N     +  + + + A  L+ +M + G+ VP++ +YN ++        MD 
Sbjct: 227 RCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGV-VPDVGTYNSIVDALCKARAMDK 285

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
              +   +   G+ PD  +Y  +IHG      WKE+ + F +M  KGL+P  VTF +   
Sbjct: 286 AEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMS 345

Query: 264 GL 265
            L
Sbjct: 346 SL 347



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 106/219 (48%), Gaps = 7/219 (3%)

Query: 79  VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE-LL 137
           V ++ I++    RA +P L    +  +   G+       ++ +KCLC   R ++A + LL
Sbjct: 124 VRTYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDEAVDVLL 183

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM-KEDGLCVPNMHSYNILIGMFM 196
             M      P A +YN   K   G   +  A+ + ++M KE G C P++ S+N +I  F 
Sbjct: 184 HRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFF 243

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
               +     ++N++   G+ PD+ +Y  ++  LC+ +   +A     +M++KG+ P  V
Sbjct: 244 KQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGV 303

Query: 257 TFETLYRGLIQS----DMLRTWRRLKKK-LDEESITFGS 290
           T+  +  G   S    +  + +R++  K L  +++TF S
Sbjct: 304 TYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSS 342



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 113/255 (44%), Gaps = 23/255 (9%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA-------HQPQLSLDKLNFM--KEKG--I 110
           +A  +FDE+  +G      S +  L   +RA       + P L L   N +  +E G  +
Sbjct: 60  DAHHLFDELLRQGTPVHNRSLNDFLAALARAPDSVSCSNGPALVLALFNRICREEAGPRV 119

Query: 111 CP-TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAM 169
            P TV TY  ++ C C   R +     +  ++R G+         F K     K  + A+
Sbjct: 120 APLTVRTYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDEAV 179

Query: 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNR----MDMVREIWNDVKGSGLGPDLDSYTM 225
            +      +  CVP+  SYN +I      +R    +DMV+ +  +  G    PD+ S+  
Sbjct: 180 DVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKE--GGRCSPDVVSFNT 237

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTW-----RRLKKK 280
           +IHG  ++ +  +AC  F EM++KG++P   T+ ++   L ++  +        + + K 
Sbjct: 238 VIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKG 297

Query: 281 LDEESITFGSEFQNY 295
           ++ + +T+ +    Y
Sbjct: 298 VEPDGVTYNAIIHGY 312


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 128/257 (49%), Gaps = 10/257 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G CKI  +  A+  + + I +G  P+V T+N L++G C++  L           
Sbjct: 428 YNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLD---------- 477

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA ++ D M   G+ PDV +++ +L+   +A + +  +     M EKG  P + TY+ + 
Sbjct: 478 NAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILT 537

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C   ++E+A  L+ EM   G+ P    +    K +    D +GA +L++++ E    
Sbjct: 538 ESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKF 597

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              + +YNI+I  F     M+M  +++N +  +G  PD  +Y ++I G C+         
Sbjct: 598 SHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYS 657

Query: 242 YFVEMIEKGLLPQKVTF 258
           + +  IEKGL+P   TF
Sbjct: 658 FLLVKIEKGLIPSLTTF 674



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 143/308 (46%), Gaps = 26/308 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y +LI G CK  ++  AE +L +M+  G EP+  TYN +++G C+   +  +++      
Sbjct: 288 YNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGA 347

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +  I  A  VF+E   +G++P++   + ++   S+     
Sbjct: 348 FKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLIL 407

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L  +N M E G  P + TY+ V+  LC  G + DA+ L+ + +  G  P   T+N   
Sbjct: 408 QALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLI 467

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y  +   + A+++  +M   G+  P++ +YN ++       + + V   +  +   G 
Sbjct: 468 DGYCKKLKLDNAIEIVDRMWNHGVS-PDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGC 526

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P++ +Y +L    C+ +K +EA     EM  KGL P  V F TL +G   +  L    +
Sbjct: 527 VPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQ 586

Query: 277 LKKKLDEE 284
           L K++DE+
Sbjct: 587 LFKRVDEQ 594



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 126/284 (44%), Gaps = 12/284 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T  +  +C+ +R   A R L  M  +G E + V Y  ++ G         + R E    
Sbjct: 149 FTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGF-----YEENHRVE---- 199

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F+EM   GI PD+ +F+ ++H   R    Q S   LN + ++G+ P + T +  +
Sbjct: 200 -AHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFI 258

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C    + +A  LL  + R G+ P   TYN              A    R+M  +G  
Sbjct: 259 QGFCQRAMLNEAIRLLDGVGR-GLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGY- 316

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN +I  +  L  M    +I  D    G  PD  +Y  LI+GLC+      A  
Sbjct: 317 EPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAIN 376

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
            F E +EKGL P  V   TL +GL Q  ++    +L  ++ E  
Sbjct: 377 VFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENG 420



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 28/182 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSE------- 54
           Y  L   +CK  +++ A   + EM  +G+ P+VV +  L+ G C    L  +        
Sbjct: 533 YNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVD 592

Query: 55  ---RFEKTIRN----------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
              +F  TI                  AEK+F++M   G  PD  ++ +++  + +    
Sbjct: 593 EQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNI 652

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
                 L    EKG+ P++ T+  V+ CLC   R+ +A  ++  MV  G+ P  E  N  
Sbjct: 653 NSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVP--EVVNTI 710

Query: 156 FK 157
           F+
Sbjct: 711 FE 712



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 1/189 (0%)

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           Y R  + Q ++D    M      P+V +Y++++  L      + A ++   M   G+ P 
Sbjct: 86  YGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPD 145

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             T+    K +      + A +L   M   G C  +  +Y  +IG F   N      E++
Sbjct: 146 VYTFTIRMKSFCRTSRPHAARRLLNNMPSQG-CESSAVAYCTVIGGFYEENHRVEAHELF 204

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            ++ G G+ PD+ ++  LIH LC K   +E+ +   +++++G+ P   T     +G  Q 
Sbjct: 205 EEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQR 264

Query: 269 DMLRTWRRL 277
            ML    RL
Sbjct: 265 AMLNEAIRL 273



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 81/189 (42%), Gaps = 7/189 (3%)

Query: 85  VLHVYSRAHQPQLSLDKLNFMK-EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM--- 140
           V  V      P  +L+  N +K E G   T+ TY  +++ L   G  E  EE+L E    
Sbjct: 10  VAAVVKYQKNPLKALEIFNSVKKEDGFKHTLLTYKGMIEKLGFHGEFEAMEEVLAETRMN 69

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
           + NG+      Y    + Y  +     A+ ++ +M     C P++ SYN ++ + +    
Sbjct: 70  IDNGLLEG--VYIGAMRNYGRKGKIQEAVDVFERMDFFN-CEPSVQSYNAIMNILVEYRY 126

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
            D   +++  ++  G+ PD+ ++T+ +   C   +   A +    M  +G     V + T
Sbjct: 127 FDQAHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCT 186

Query: 261 LYRGLIQSD 269
           +  G  + +
Sbjct: 187 VIGGFYEEN 195


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 146/279 (52%), Gaps = 16/279 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+ K   +D A     EM+ +G+ P+VVTYN L++G+C+      ++  +K + 
Sbjct: 203 YNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCK------AQAMDKAVA 256

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             + +FD    +G+ PD  +++I++  Y    Q + ++  L  M   G+ P V TYS ++
Sbjct: 257 ILQHMFD----KGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLI 312

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  GR  +A  +   MVR G  P++  Y+     Y  +        L   M  DG  
Sbjct: 313 QYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDG-- 370

Query: 182 VPNMH-SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           +P  H ++NILI  +     +D     + +++ +GL PD+ SY+ +IH LC+  + ++A 
Sbjct: 371 IPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAV 430

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
            +F +M+ +GL P  ++F +L  GL     +  W+++++
Sbjct: 431 YHFNQMVSEGLSPNIISFTSLIHGLCS---IGEWKKVEE 466



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 136/305 (44%), Gaps = 26/305 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL-HPSERFEKTI 60
           Y+ LI  +CKI R   A      M+ +G +PN   Y++LL+G   + +L    +  +  I
Sbjct: 308 YSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMI 367

Query: 61  RN------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           R+                        A   F EMR  G+ PDV S+S V+H+  +  + +
Sbjct: 368 RDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVE 427

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++   N M  +G+ P + +++S++  LCS G  +  EEL  EM+  G+ P A   N   
Sbjct: 428 DAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIM 487

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      A   +  +   G+  P++ SYN LI  +  + +MD   +  + +   GL
Sbjct: 488 DNLCKEGRVVEAQDFFDMVIHIGV-KPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGL 546

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD  +Y  L++G  +  + ++A   + EM  K +    +T   +  GL Q+  +   R 
Sbjct: 547 RPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARE 606

Query: 277 LKKKL 281
           L  K+
Sbjct: 607 LYMKM 611



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 127/287 (44%), Gaps = 13/287 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C + R+D+A       ++ G     VT N L+ G+C            +T    +
Sbjct: 97  LIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDG---------NRTDDAMD 147

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG---ICPTVATYSSVV 121
            VF  M   G  PDV S++ ++       + Q +L+ L  M   G     P V +Y++V+
Sbjct: 148 MVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVI 207

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G ++ A  L  EM+  G+ P   TYN         +  + A+ + + M + G+ 
Sbjct: 208 DGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGV- 266

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+  +YNI+I  + +L +++    +   + GSGL PD+ +Y++LI   C+  +  EA  
Sbjct: 267 MPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARS 326

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
            F  M+ KG  P    +  L  G      L   R L   +  + I F
Sbjct: 327 VFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPF 373



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 116/284 (40%), Gaps = 50/284 (17%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA-------HQPQLSLDKLNFMKEKGICPTV 114
           +A  +FDE+  +     V +F+ VL V +RA       H   L++   N M   G+    
Sbjct: 32  DALNLFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMVRSGVNMMA 91

Query: 115 ATYSSVVKCLCSCGRIE-----------------------------------DAEELL-G 138
           A    +++C C+ GR++                                   DA +++  
Sbjct: 92  AIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTDDAMDMVFR 151

Query: 139 EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL--CVPNMHSYNILIGMFM 196
            M   G  P   +YN   K     K +  A++L   M  DG   C PN+ SYN +I  F 
Sbjct: 152 RMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFF 211

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
               +D    +++++ G GL PD+ +Y  LI GLC+ Q   +A      M +KG++P   
Sbjct: 212 KEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTR 271

Query: 257 TFETLYRGLIQSDMLRTWRRLKKK-----LDEESITFGSEFQNY 295
           T+  + RG      L    RL KK     L  + +T+    Q Y
Sbjct: 272 TYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYY 315



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 137/321 (42%), Gaps = 44/321 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSLI+G C I      E    EMI RG+ P+ +  N +++ +C+          E  + 
Sbjct: 448 FTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCK----------EGRVV 497

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+  FD +   G++PDV S++ ++  Y    +   S+ +L+ M   G+ P   TY+S++
Sbjct: 498 EAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLL 557

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
                 GR+EDA  L  EM R  V   A T N              A +LY +M + G  
Sbjct: 558 NGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQ 617

Query: 181 -----------------CVP----------------NMHSYNILIGMFMALNRMDMVREI 207
                            CV                 ++ +++I+I   + + R+D  + +
Sbjct: 618 LRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSL 677

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           ++ +   G  PD+ +Y+++I    E+   +E+   F+ M + G          + R L++
Sbjct: 678 FSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLLE 737

Query: 268 SDMLRTWRRLKKKLDEESITF 288
              +R       K+DE++ + 
Sbjct: 738 KGDVRRAGTYLTKIDEKNFSL 758


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 145/285 (50%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI+G    N+   A   + +M++RG +P++VTY  ++NG+C+R            I 
Sbjct: 188 FNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGD----------ID 237

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +M    IE DV  ++ ++    +      +    N M+ KGI P V TY+S++
Sbjct: 238 LALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLI 297

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLC+ GR  DA  LL  M+   + P+  T++     +        A KLY +M +  + 
Sbjct: 298 SCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI- 356

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ LI  F   +R+D  + ++  +      P++ +Y  LI G C+ ++ +E  +
Sbjct: 357 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGME 416

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F EM ++GL+   VT+ TL +GL Q+      +++ KK+  + +
Sbjct: 417 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461



 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 142/283 (50%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI   C   R   A R L  MIER + PNVVT++ L++   +          E  + 
Sbjct: 293 YNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVK----------EGKLV 342

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK++DEM  R I+PD+ ++S +++ +    +   +      M  K   P V TY++++
Sbjct: 343 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 402

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R+E+  EL  EM + G+  +  TYN   +      D + A K++++M  DG+ 
Sbjct: 403 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV- 461

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+IL+       +++    ++  ++ S + PD+ +Y ++I G+C+  K ++   
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KG+ P  + + T+  G  +  +      L +++ E+
Sbjct: 522 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKED 564



 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 141/304 (46%), Gaps = 50/304 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI  +C+ +++ +A   LG+M++ G EP++VT + LLNG C            K I 
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCH----------SKRIS 167

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLH---VYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           +A  + D+M   G +PD  +F+ ++H   ++++A +    +D+   M ++G  P + TY 
Sbjct: 168 DAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQ---MVQRGCQPDLVTYG 224

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +VV  LC  G I+ A  LL +M +  +      YN         K  + A  L+ +M+  
Sbjct: 225 AVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETK 284

Query: 179 GL------------CV----------------------PNMHSYNILIGMFMALNRMDMV 204
           G+            C+                      PN+ +++ LI  F+   ++   
Sbjct: 285 GIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEA 344

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            ++++++    + PD+ +Y+ LI+G C   +  EA   F  MI K   P  VT+ TL +G
Sbjct: 345 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKG 404

Query: 265 LIQS 268
             ++
Sbjct: 405 FCKA 408



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 133/299 (44%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+    K+ + D+       M    +  ++ +YN+L+N  CRR+ L           
Sbjct: 83  FNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPL--------- 133

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V  +M   G EPD+ + S +L+ Y  + +   ++  ++ M E G  P   T+++++
Sbjct: 134 -ALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLI 192

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L    +  +A  L+ +MV+ G  P   TY         R D + A+ L ++M E G  
Sbjct: 193 HGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKM-EKGKI 251

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++  YN +I        +D    ++N ++  G+ PD+ +Y  LI  LC   +W +A +
Sbjct: 252 EADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASR 311

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
               MIE+ + P  VTF  L    ++   L    +L     K+ +D +  T+ S    +
Sbjct: 312 LLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 370



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 123/256 (48%), Gaps = 30/256 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           Y+SLI G+C  +R+D A+     MI +   PNVVTYN L+ G C+               
Sbjct: 363 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMS 422

Query: 47  -RASLHPSERFEKTIRN---------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            R  +  +  +   I+          A+K+F +M   G+ PD+ ++SI+L    +  + +
Sbjct: 423 QRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLE 482

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L    ++++  + P + TY+ +++ +C  G++ED  +L   +   GV P+   Y    
Sbjct: 483 KALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 542

Query: 157 KEY--RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
             +  +G K+   A  L+R+MKEDG  +P+   YN LI   +         E+  +++  
Sbjct: 543 SGFCRKGLKEEADA--LFREMKEDG-TLPDSGCYNTLIRARLRDGDKAASAELIKEMRSC 599

Query: 215 GLGPDLDSYTMLIHGL 230
           G   D  + +M+I+ L
Sbjct: 600 GFVGDASTISMVINML 615



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 1/137 (0%)

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           +++DA  L GEMV++   PS   +N         K  +  + L  +M+   +   +++SY
Sbjct: 60  KLDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISY-DLYSY 118

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           NILI  F   +++ +   +   +   G  PD+ + + L++G C  ++  +A     +M+E
Sbjct: 119 NILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE 178

Query: 249 KGLLPQKVTFETLYRGL 265
            G  P  VTF TL  GL
Sbjct: 179 MGYKPDTVTFNTLIHGL 195


>gi|115455091|ref|NP_001051146.1| Os03g0728200 [Oryza sativa Japonica Group]
 gi|50428716|gb|AAT77067.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108710874|gb|ABF98669.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|113549617|dbj|BAF13060.1| Os03g0728200 [Oryza sativa Japonica Group]
          Length = 601

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 132/272 (48%), Gaps = 13/272 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+YGWC++ ++D A+  L  M    V P+VV +N LL G           RFE    
Sbjct: 198 YTALLYGWCRMGKLDEAKHVLARMKAAEVAPDVVVFNTLLAGFV------ADGRFE---- 247

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  EM  RG  P+  S++ ++       +   ++     M+ KG  P   TY ++V
Sbjct: 248 DAFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLV 307

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GRI    E L  M R G+   A  Y  FF  +  ++     ++L  +M+E   C
Sbjct: 308 TAFCKAGRISQGYEFLDVMAREGLRVDAGVYLGFFVAHEKKEQLEECLELMERMRE-CRC 366

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YN++I +   L        +WN+++ + L P +D++ +++ GL  +    EAC 
Sbjct: 367 PPDLSIYNVVIRLACKLGETKQAVALWNEMETNELSPGVDTFAIMVTGLVGQGVLVEACG 426

Query: 242 YFVEMIEKGLL--PQKVTFETLYRGLIQSDML 271
           YF +M+ +GL   PQ    + L   L++   L
Sbjct: 427 YFKDMVGRGLFVAPQYGVLKDLLNSLVRDQKL 458


>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 147/281 (52%), Gaps = 12/281 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI   C ++++  A RF  EMI+ G++  +VTYN L+NG+ R             +
Sbjct: 502 IYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGR----------V 551

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + AE +F +M  +G  PDV +++ ++  Y+++   Q  L+  + MK  GI PTV T+  +
Sbjct: 552 KKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPL 611

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C    +   +++  EM++  + P    YN     Y    +   AM L++QM + G+
Sbjct: 612 IYA-CRKEGVVTMDKMFQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGV 670

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
               + +YN LI  ++   R+  ++ + +D+K  GL P +D+Y +LI GLC+ + +  A 
Sbjct: 671 DCDKV-TYNSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLCDLKDFNGAY 729

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            ++ EM+E+GLL        L  GL +  MLR  + +  +L
Sbjct: 730 FWYREMVERGLLLNVSMCYQLISGLREEGMLREAQIVSSEL 770



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 143/327 (43%), Gaps = 44/327 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVV-------------------------- 35
           Y SL+ G C   R+D A   L EM   G  P                             
Sbjct: 265 YNSLLNGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRID 324

Query: 36  --TYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93
             TY +LLNG+CR        R EK    AE+V  ++   G+ P   S++I+++ Y +  
Sbjct: 325 ERTYCILLNGLCRVG------RIEK----AEEVLAKLVENGVTPSKISYNILVNAYCQEG 374

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
             + ++     M+E+G+ P   T+++V+   C  G ++ AE  +  MV  GV P+ ETYN
Sbjct: 375 DVKKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYN 434

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
                Y  +       +   +M + G+  PN+ SY  LI       ++     +  D+ G
Sbjct: 435 SLINGYGQKGHFVRCFEFLDEMDKAGI-KPNVISYGSLINCLCKDRKLIDAEIVLADMIG 493

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT 273
            G+ P+ + Y MLI   C   K K+A ++F EMI+ G+    VT+ TL  GL ++  ++ 
Sbjct: 494 RGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKK 553

Query: 274 WRRL-----KKKLDEESITFGSEFQNY 295
              L      K  + + IT+ S    Y
Sbjct: 554 AEDLFLQMAGKGCNPDVITYNSLISGY 580



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 137/271 (50%), Gaps = 19/271 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+ G C++ RI+ AE  L +++E GV P+ ++YN+L+N  C+          E  ++
Sbjct: 328 YCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQ----------EGDVK 377

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A    ++M  RG+EP+  +F+ V+  +    +   +   +  M EKG+ PTV TY+S++
Sbjct: 378 KAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLI 437

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETY----NCFFKEYRGRKDANGAMKLYRQMKE 177
                 G      E L EM + G+ P+  +Y    NC  K+   RK  +  + L   M  
Sbjct: 438 NGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKD---RKLIDAEIVL-ADMIG 493

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G+  PN   YN+LI    +L+++      ++++  SG+   L +Y  LI+GL    + K
Sbjct: 494 RGVS-PNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVK 552

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           +A   F++M  KG  P  +T+ +L  G  +S
Sbjct: 553 KAEDLFLQMAGKGCNPDVITYNSLISGYAKS 583



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 144/309 (46%), Gaps = 33/309 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y   +     +  +D     +  M++ G+ P+V  YN++L G+C+           + I+
Sbjct: 160 YGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKV----------RRIK 209

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+FDEM  R + P+  +++ ++  Y +    + +L     MKE+ +   + TY+S++
Sbjct: 210 DARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLL 269

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
             LC  GR++DA E+L EM  +G  P        F  +     +NGA        +DGL 
Sbjct: 270 NGLCGSGRVDDAREVLLEMEGSGFLPGG------FLSFVFDDHSNGA-------GDDGLF 316

Query: 181 ----CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
                  +  +Y IL+     + R++   E+   +  +G+ P   SY +L++  C++   
Sbjct: 317 DGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDV 376

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQS---DMLRTW--RRLKKKLDEESITFGSE 291
           K+A     +M E+GL P ++TF T+     ++   D   TW  R ++K +     T+ S 
Sbjct: 377 KKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSL 436

Query: 292 FQNYHFKPY 300
              Y  K +
Sbjct: 437 INGYGQKGH 445



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 138/321 (42%), Gaps = 47/321 (14%)

Query: 10  CKINR-IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           C +++ +D A      M + G  P+  + N LL       +L  S  FEKT+     VF 
Sbjct: 97  CSVSKMLDEATDLYSTMRKDGFVPSTRSVNRLLR------TLVDSRHFEKTL----AVFA 146

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
           ++   G  PD  ++   +             + +  M + G+ P+V  Y+ V+  LC   
Sbjct: 147 DVIDSGTRPDAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVR 206

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL-CVPNMHS 187
           RI+DA +L  EM++  + P+  TYN     Y        A+    +MKE  + C  N+ +
Sbjct: 207 RIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVEC--NLVT 264

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGP----------------------------D 219
           YN L+       R+D  RE+  +++GSG  P                            D
Sbjct: 265 YNSLLNGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRID 324

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR-----GLIQSDMLRTW 274
             +Y +L++GLC   + ++A +   +++E G+ P K+++  L       G ++  +L T 
Sbjct: 325 ERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTE 384

Query: 275 RRLKKKLDEESITFGSEFQNY 295
           +  ++ L+   ITF +    +
Sbjct: 385 QMEERGLEPNRITFNTVISKF 405



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 83/164 (50%), Gaps = 2/164 (1%)

Query: 124 LCSCGR-IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
           LCS  + +++A +L   M ++G  PS  + N   +     +     + ++  + + G   
Sbjct: 96  LCSVSKMLDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSG-TR 154

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+  +Y   +   + L  +D   E+   +   G+GP + +Y +++ GLC+ ++ K+A + 
Sbjct: 155 PDAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKL 214

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           F EMI++ ++P  VT+ TL  G  +   +      K+++ E+++
Sbjct: 215 FDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNV 258


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 143/285 (50%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI+G    N+   A   +  M+ RG +P++ TY  ++NG+C+R            I 
Sbjct: 172 FNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGD----------ID 221

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +M    IE DV  ++ ++           +L+    M  KGI P V TY+S++
Sbjct: 222 LALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 281

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +CLC+ GR  DA  LL +M+   + P+  T++     +        A KLY +M +  + 
Sbjct: 282 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI- 340

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ LI  F   +R+D  + ++  +      P++ +Y  LI G C+ ++ +E  +
Sbjct: 341 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGME 400

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F EM ++GL+   VT+ TL +GL Q+      +++ KK+  + +
Sbjct: 401 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 445



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 143/283 (50%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI   C   R   A R L +MIER + PNVVT++ L++   +          E  + 
Sbjct: 277 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK----------EGKLV 326

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK++DEM  R I+PD+ ++S +++ +    +   +      M  K   P V TY++++
Sbjct: 327 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 386

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R+E+  EL  EM + G+  +  TYN   +      D + A K++++M  DG+ 
Sbjct: 387 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV- 445

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+IL+       +++    ++  ++ S + PD+ +Y ++I G+C+  K ++   
Sbjct: 446 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 505

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KG+ P  + + T+  G  +  +      L +++ E+
Sbjct: 506 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKED 548



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 135/279 (48%), Gaps = 17/279 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI  +C+ +++ +A   LG+M++ G EP++VT + LLNG C            K I 
Sbjct: 102 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCH----------GKRIS 151

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLH---VYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A  + D+M V   +P+  +F+ ++H   ++++A +    +D+   M  +G  P + TY 
Sbjct: 152 EAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDR---MVARGCQPDLFTYG 208

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +VV  LC  G I+ A  LL +M +  +      Y          K+ N A+ L+ +M   
Sbjct: 209 TVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNK 268

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  PN+ +YN LI       R      + +D+    + P++ +++ LI    ++ K  E
Sbjct: 269 GI-RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 327

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A + + EMI++ + P   T+ +L  G    D L   + +
Sbjct: 328 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 366



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 124/256 (48%), Gaps = 30/256 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           Y+SLI G+C  +R+D A+     MI +   PNVVTYN L+ G C+               
Sbjct: 347 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMS 406

Query: 47  -RASLHPSERFEKTIRN---------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            R  +  +  +   I+          A+K+F +M   G+ PD+ ++SI+L    +  + +
Sbjct: 407 QRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLE 466

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L    ++++  + P + TY+ +++ +C  G++ED  +L   +   GV P+   Y    
Sbjct: 467 KALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 526

Query: 157 KEY--RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
             +  +G K+   A  L+R+MKEDG  +PN  +YN LI   +         E+  +++  
Sbjct: 527 SGFCRKGLKEEADA--LFREMKEDG-TLPNSGTYNTLIRARLRDGDKAASAELIKEMRSC 583

Query: 215 GLGPDLDSYTMLIHGL 230
           G   D  + +M+I+ L
Sbjct: 584 GFVGDASTISMVINML 599



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 130/282 (46%), Gaps = 16/282 (5%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           ++D A    GEM++    P++V +N LL+ + +        +F+  I   E+    M+  
Sbjct: 44  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKM------NKFDLVISLGER----MQNL 93

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
            I  D+ S++I+++ + R  Q  L+L  L  M + G  P + T SS++   C   RI +A
Sbjct: 94  RISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEA 153

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             L+ +M      P+  T+N           A+ A+ L  +M   G C P++ +Y  ++ 
Sbjct: 154 VALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARG-CQPDLFTYGTVVN 212

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
                  +D+   +   ++   +  D+  YT +I  LC  +   +A   F EM  KG+ P
Sbjct: 213 GLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRP 272

Query: 254 QKVTFETLYRGLIQ----SDMLRTWRR-LKKKLDEESITFGS 290
             VT+ +L R L      SD  R     +++K++   +TF +
Sbjct: 273 NVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 314



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 131/302 (43%), Gaps = 22/302 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+    K+N+ D+       M    +  ++ +YN+L+N  CRR+ L           
Sbjct: 67  FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPL--------- 117

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVY---SRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A  V  +M   G EPD+ + S +L+ Y    R  +    +D++  M+ +   P   T++
Sbjct: 118 -ALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQ---PNTVTFN 173

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++  L    +  +A  L+  MV  G  P   TY         R D + A+ L ++M E 
Sbjct: 174 TLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM-EK 232

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G    ++  Y  +I        ++    ++ ++   G+ P++ +Y  LI  LC   +W +
Sbjct: 233 GKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSD 292

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQ 293
           A +   +MIE+ + P  VTF  L    ++   L    +L     K+ +D +  T+ S   
Sbjct: 293 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 352

Query: 294 NY 295
            +
Sbjct: 353 GF 354



 Score = 40.8 bits (94), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT++I G+C+    + A+    EM E G  PN  TYN L+     RA L   ++     
Sbjct: 521 IYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLI-----RARLRDGDK----- 570

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
             + ++  EMR  G   D ++ S+V+++
Sbjct: 571 AASAELIKEMRSCGFVGDASTISMVINM 598


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 143/285 (50%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI+G    N+   A   +  M+ RG +P++ TY  ++NG+C+R            I 
Sbjct: 188 FNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGD----------ID 237

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +M    IE DV  ++ ++           +L+    M  KGI P V TY+S++
Sbjct: 238 LALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 297

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +CLC+ GR  DA  LL +M+   + P+  T++     +        A KLY +M +  + 
Sbjct: 298 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI- 356

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ LI  F   +R+D  + ++  +      P++ +Y  LI G C+ ++ +E  +
Sbjct: 357 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGME 416

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F EM ++GL+   VT+ TL +GL Q+      +++ KK+  + +
Sbjct: 417 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 143/283 (50%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI   C   R   A R L +MIER + PNVVT++ L++   +          E  + 
Sbjct: 293 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK----------EGKLV 342

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK++DEM  R I+PD+ ++S +++ +    +   +      M  K   P V TY++++
Sbjct: 343 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 402

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R+E+  EL  EM + G+  +  TYN   +      D + A K++++M  DG+ 
Sbjct: 403 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV- 461

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+IL+       +++    ++  ++ S + PD+ +Y ++I G+C+  K ++   
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KG+ P  + + T+  G  +  +      L +++ E+
Sbjct: 522 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKED 564



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 135/279 (48%), Gaps = 17/279 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI  +C+ +++ +A   LG+M++ G EP++VT + LLNG C            K I 
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCH----------GKRIS 167

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLH---VYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A  + D+M V   +P+  +F+ ++H   ++++A +    +D+   M  +G  P + TY 
Sbjct: 168 EAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDR---MVARGCQPDLFTYG 224

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +VV  LC  G I+ A  LL +M +  +      Y          K+ N A+ L+ +M   
Sbjct: 225 TVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNK 284

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  PN+ +YN LI       R      + +D+    + P++ +++ LI    ++ K  E
Sbjct: 285 GI-RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 343

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A + + EMI++ + P   T+ +L  G    D L   + +
Sbjct: 344 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 124/256 (48%), Gaps = 30/256 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           Y+SLI G+C  +R+D A+     MI +   PNVVTYN L+ G C+               
Sbjct: 363 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMS 422

Query: 47  -RASLHPSERFEKTIRN---------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            R  +  +  +   I+          A+K+F +M   G+ PD+ ++SI+L    +  + +
Sbjct: 423 QRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLE 482

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L    ++++  + P + TY+ +++ +C  G++ED  +L   +   GV P+   Y    
Sbjct: 483 KALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 542

Query: 157 KEY--RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
             +  +G K+   A  L+R+MKEDG  +PN  +YN LI   +         E+  +++  
Sbjct: 543 SGFCRKGLKEEADA--LFREMKEDG-TLPNSGTYNTLIRARLRDGDKAASAELIKEMRSC 599

Query: 215 GLGPDLDSYTMLIHGL 230
           G   D  + +M+I+ L
Sbjct: 600 GFVGDASTISMVINML 615



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 130/282 (46%), Gaps = 16/282 (5%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           ++D A    GEM++    P++V +N LL+ + +        +F+  I   E+    M+  
Sbjct: 60  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKM------NKFDLVISLGER----MQNL 109

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
            I  D+ S++I+++ + R  Q  L+L  L  M + G  P + T SS++   C   RI +A
Sbjct: 110 RISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEA 169

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             L+ +M      P+  T+N           A+ A+ L  +M   G C P++ +Y  ++ 
Sbjct: 170 VALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARG-CQPDLFTYGTVVN 228

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
                  +D+   +   ++   +  D+  YT +I  LC  +   +A   F EM  KG+ P
Sbjct: 229 GLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRP 288

Query: 254 QKVTFETLYRGLIQ----SDMLRTWRR-LKKKLDEESITFGS 290
             VT+ +L R L      SD  R     +++K++   +TF +
Sbjct: 289 NVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 330



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 131/302 (43%), Gaps = 22/302 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+    K+N+ D+       M    +  ++ +YN+L+N  CRR+ L           
Sbjct: 83  FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPL--------- 133

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVY---SRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A  V  +M   G EPD+ + S +L+ Y    R  +    +D++  M+ +   P   T++
Sbjct: 134 -ALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQ---PNTVTFN 189

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++  L    +  +A  L+  MV  G  P   TY         R D + A+ L ++M E 
Sbjct: 190 TLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM-EK 248

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G    ++  Y  +I        ++    ++ ++   G+ P++ +Y  LI  LC   +W +
Sbjct: 249 GKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSD 308

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQ 293
           A +   +MIE+ + P  VTF  L    ++   L    +L     K+ +D +  T+ S   
Sbjct: 309 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 368

Query: 294 NY 295
            +
Sbjct: 369 GF 370



 Score = 40.8 bits (94), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT++I G+C+    + A+    EM E G  PN  TYN L+     RA L   ++     
Sbjct: 537 IYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLI-----RARLRDGDK----- 586

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
             + ++  EMR  G   D ++ S+V+++
Sbjct: 587 AASAELIKEMRSCGFVGDASTISMVINM 614


>gi|242038267|ref|XP_002466528.1| hypothetical protein SORBIDRAFT_01g009420 [Sorghum bicolor]
 gi|241920382|gb|EER93526.1| hypothetical protein SORBIDRAFT_01g009420 [Sorghum bicolor]
          Length = 595

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 134/272 (49%), Gaps = 13/272 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+YGWC+  ++D A+  L  M    V  +VV +N LL G           RFE    
Sbjct: 192 YTALLYGWCRQGKLDEAKHVLARMKAADVALDVVAFNTLLAGFV------ADGRFE---- 241

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  +M  RG  P+  S++ ++       +   ++     M+ KG  P   TY ++V
Sbjct: 242 DAFELTGQMEQRGCPPNAVSYTTLIQGLGARGRVDEAMRVFVEMRRKGCAPDAVTYGTLV 301

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+I    E L  + R+G+   A  Y+ FF  +  ++     ++L  +M+E   C
Sbjct: 302 STFCKAGKISQGYEFLDAISRDGLRVDAAVYHGFFVAHEKKEQLEECLELMERMRE-CRC 360

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YN++I +   L        +WN+++  GL P +D++ ++++GL  +    EAC 
Sbjct: 361 PPDLKIYNVVIRLACRLGETKQAMSLWNEMETGGLSPGVDTFAIMVNGLVGQGLLVEACS 420

Query: 242 YFVEMIEKGLL--PQKVTFETLYRGLIQSDML 271
           YF +M+ +GL   PQ    + L   L++ + L
Sbjct: 421 YFKDMVGRGLFVAPQYGVLKDLLNALVRDEKL 452



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 2/179 (1%)

Query: 83  SIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR 142
           S++  V  R  QP+L    L+ +  +      A + S+++ L   G +  AE+L+ E  +
Sbjct: 124 SLLCPVLRRLPQPRLLPFALSLLSARPDHDQPALFLSLLESLSKAGHVVTAEQLV-EEPQ 182

Query: 143 NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202
                S   Y      +  +   + A  +  +MK   + + ++ ++N L+  F+A  R +
Sbjct: 183 TRFPLSLRHYTALLYGWCRQGKLDEAKHVLARMKAADVAL-DVVAFNTLLAGFVADGRFE 241

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
              E+   ++  G  P+  SYT LI GL  + +  EA + FVEM  KG  P  VT+ TL
Sbjct: 242 DAFELTGQMEQRGCPPNAVSYTTLIQGLGARGRVDEAMRVFVEMRRKGCAPDAVTYGTL 300



 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 36/204 (17%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNG----------------- 43
           +Y  +I   C++     A     EM   G+ P V T+ +++NG                 
Sbjct: 366 IYNVVIRLACRLGETKQAMSLWNEMETGGLSPGVDTFAIMVNGLVGQGLLVEACSYFKDM 425

Query: 44  VCRRASLHPSERFEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVLH-VYSRA 92
           V R   + P     K + N          A+ V++ +  +G E +V++++I +H +Y++ 
Sbjct: 426 VGRGLFVAPQYGVLKDLLNALVRDEKLELAKDVWECIASKGCELNVSAWTIWIHALYAKK 485

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
           H  +  L  L+ M E G+ P   T++ ++K L      + A E+  E VR      AE  
Sbjct: 486 HVKEACLYCLD-MLEAGVMPQPDTFAKLMKGLKKLYNRQIAAEIT-EKVRK----MAEER 539

Query: 153 NCFFKEY--RGRKDANGAMKLYRQ 174
           +  FK Y  RG +D     K  R+
Sbjct: 540 HVSFKMYKRRGVRDLEAKPKAKRR 563


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 153/312 (49%), Gaps = 27/312 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y ++I GWCK+ R+D A +   EM+ +G V+P  V YN L+ G C +  L  +  +   +
Sbjct: 111 YGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRM 170

Query: 61  -------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                      A ++ +EM  +G+ PDV +++I+++ + +    
Sbjct: 171 VERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNV 230

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + +L+    M  +G+  TV TY+S++  L   G++++ ++L  E VR G+ P    YN  
Sbjct: 231 KKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 290

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +    + + A ++  +M++  +  P+  +YN L+     L R+D  R++ +++   G
Sbjct: 291 INSHSTSGNIDRAFEIMGEMEKKRIA-PDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRG 349

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           + PDL +Y  LI G   K   K+A +   EM+ KG  P  +T+  L +GL ++       
Sbjct: 350 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 409

Query: 276 RLKKKLDEESIT 287
            + K++ E  IT
Sbjct: 410 NMVKEMVENGIT 421



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 133/329 (40%), Gaps = 96/329 (29%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVE----------------------------- 31
           MY +LI G+C   ++D A  +   M+ERGV                              
Sbjct: 146 MYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEM 205

Query: 32  ------PNVVTYNVLLNGVCRRASLHPS-ERFEK------------------------TI 60
                 P+V TYN+L+NG C+  ++  + E FE                          +
Sbjct: 206 GGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQV 265

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           +  +K+FDE   RGI PD+  ++ +++ +S +     + + +  M++K I P   TY+++
Sbjct: 266 QETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTL 325

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++ LC  GR+++A +L+ EM + G+ P   TYN     Y  + D   A+++  +M   G 
Sbjct: 326 MRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKG- 384

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
                                                P L +Y  LI GLC+  +  +A 
Sbjct: 385 -----------------------------------FNPTLLTYNALIQGLCKNGQGDDAE 409

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
               EM+E G+ P   T+ +L  GL   D
Sbjct: 410 NMVKEMVENGITPDDSTYISLIEGLTTED 438



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 100/220 (45%), Gaps = 10/220 (4%)

Query: 48  ASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE 107
           ASLHP      +        D  R+R +    T+F+I+L     A +P  +L+ L  M  
Sbjct: 11  ASLHPLLSALPSAPAFALFADMFRLR-LPLCTTTFNIMLRHLCSAGKPARALELLRQMPR 69

Query: 108 KGICPTVATYSSVVKCLCSCGRIEDAEELLGEM-VRNGVCPSAETYNCFFKEY--RGRKD 164
               P   TY++V+   CS GR++ A +++ EM  R G+ P+  TY      +   GR D
Sbjct: 70  ----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVD 125

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
              A+K++ +M   G   P    YN LIG +    ++D      + +   G+   + +Y 
Sbjct: 126 E--AVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYN 183

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           +L+H L    +  EA +   EM  KGL P   T+  L  G
Sbjct: 184 LLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILING 223


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 139/272 (51%), Gaps = 17/272 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+      R D AE  + E+ E+G+ P+ +TYN+L+NG CR A             
Sbjct: 364 YNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCA------------- 410

Query: 62  NAEKVF---DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           NA+K F   DEM   GI+P   +++ +LHV S+ ++ + + D    +  +G+ P V  ++
Sbjct: 411 NAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFN 470

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++   CS   ++ A ELL +M R  V P   T+N   + +        A +L+ +MK  
Sbjct: 471 ALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRR 530

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P+  S+N LI  +     +     + N++  +G  P + +Y  L+ GLC+ Q+   
Sbjct: 531 GI-KPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDL 589

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           A +   EM+ KG+ P   T+ TL  G+ + ++
Sbjct: 590 AEELLKEMVSKGMTPDDTTYFTLIEGIAKVNI 621



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 141/283 (49%), Gaps = 11/283 (3%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           SL+  + K+NR + A     EM    ++ +V T+N+++N +C+          E  ++ A
Sbjct: 191 SLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCK----------EGKLKKA 240

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
           +     M   G++P++ +++ ++H Y  + + + +   L  MK + I P   TY S++  
Sbjct: 241 KDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISG 300

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           +C  GR+E+A ++  EMV+ G+ PSA  YN     +  + + + A     +M + G+  P
Sbjct: 301 MCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGIS-P 359

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
            M +YN LI       R D    +  +++  G+ PD  +Y +LI+G C     K+A    
Sbjct: 360 TMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLH 419

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            EM+  G+ P K T+ +L   L + + ++    L KK+  E +
Sbjct: 420 DEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGV 462



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 143/299 (47%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++++G+C   R++ A+  L  M  + +EP+  TY  L++G+C++  L           
Sbjct: 259 YNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRL----------E 308

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F+EM  +G+ P    ++ ++  +       ++    + M +KGI PT++TY+S++
Sbjct: 309 EASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLI 368

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L    R ++AE ++ E+   G+ P A TYN     Y    +A  A  L+ +M   G+ 
Sbjct: 369 HALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGI- 427

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P   +Y  L+ +    NRM    +++  +   G+ PD+  +  LI G C     K A +
Sbjct: 428 KPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFE 487

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
              +M    + P +VTF T+ +G  +   +   R L     ++ +  + I+F +    Y
Sbjct: 488 LLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGY 546



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 143/290 (49%), Gaps = 28/290 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR-----ASLHPSERF 56
           Y SLI G CK  R++ A +   EM+++G+ P+ V YN L++G C +     AS +  E  
Sbjct: 294 YGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEML 353

Query: 57  EKTIR--------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +K I                      AE +  E++ +GI PD  +++I+++ Y R    +
Sbjct: 354 KKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAK 413

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    + M   GI PT  TY+S++  L    R+++A++L  ++   GV P    +N   
Sbjct: 414 KAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALI 473

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCV-PNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
             +    +  GA +L + M  D + V P+  ++N ++       +++  RE+++++K  G
Sbjct: 474 DGHCSNSNVKGAFELLKDM--DRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRG 531

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           + PD  S+  LI G   +   K+A +   EM++ G  P  +T+  L +GL
Sbjct: 532 IKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGL 581



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 10/152 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+ +LI G C  + +  A   L +M    V P+ VT+N ++ G CR          E  +
Sbjct: 468 MFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCR----------EGKV 517

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++FDEM+ RGI+PD  SF+ ++  YSR    + +    N M + G  PTV TY+++
Sbjct: 518 EEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNAL 577

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
           V+ LC     + AEELL EMV  G+ P   TY
Sbjct: 578 VQGLCKNQEGDLAEELLKEMVSKGMTPDDTTY 609



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 121/287 (42%), Gaps = 46/287 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++  LI   C +NR D A      M E+GV P + T N LL+   +   L+ +E      
Sbjct: 153 VFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLK---LNRTEA----- 204

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  ++ EM    I+  V +F+I+++V  +  + + + D +  M+  G+ P + TY+++
Sbjct: 205 --AWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTI 262

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V   CS GR+E A+ +L  M R  + P + TY                          G+
Sbjct: 263 VHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLI---------------------SGM 301

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C                  R++   +I+ ++   GL P    Y  LI G C K     A 
Sbjct: 302 C---------------KQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMAS 346

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            Y  EM++KG+ P   T+ +L   L           + K++ E+ I+
Sbjct: 347 AYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGIS 393



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 6/191 (3%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           MKEKG+ PT+ T +S++       R E A  L  EM R  +  S  T+N           
Sbjct: 177 MKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGK 236

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
              A      M+  G+  PN+ +YN ++  + +  R++    I   +K   + PD  +Y 
Sbjct: 237 LKKAKDFVGHMETSGV-KPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYG 295

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS---DMLRTWRR--LKK 279
            LI G+C++ + +EA + F EM++KGL P  V + TL  G       DM   ++   LKK
Sbjct: 296 SLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKK 355

Query: 280 KLDEESITFGS 290
            +     T+ S
Sbjct: 356 GISPTMSTYNS 366



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 99/201 (49%), Gaps = 11/201 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSL++   K NR+  A+    ++   GV P+V+ +N L++G C  ++          ++
Sbjct: 434 YTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSN----------VK 483

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++  +M    + PD  +F+ ++  + R  + + + +  + MK +GI P   ++++++
Sbjct: 484 GAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLI 543

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G I+DA  +  EM+  G  P+  TYN   +     ++ + A +L ++M   G+ 
Sbjct: 544 SGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGM- 602

Query: 182 VPNMHSYNILIGMFMALNRMD 202
            P+  +Y  LI     +N  D
Sbjct: 603 TPDDTTYFTLIEGIAKVNIPD 623


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 135/267 (50%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI+G  + NR   A   +  M+ +G +P++VTY +++NG+C+R            I 
Sbjct: 189 FNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGD----------ID 238

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +M    IEP V  ++ ++           +L+    M  KGI P V TY+S++
Sbjct: 239 LALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 298

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +CLC+ GR  DA  LL +M+   + P+  T++     +        A KLY +M +  + 
Sbjct: 299 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI- 357

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ LI  F   +R+D  + ++  +      P++ +Y  LI G C+ ++  E  +
Sbjct: 358 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGME 417

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F EM ++GL+   VT+ TL  G  Q+
Sbjct: 418 LFREMSQRGLVGNTVTYTTLIHGFFQA 444



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 144/283 (50%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI   C   R   A R L +MIER + PNVVT++ L++   +          E  + 
Sbjct: 294 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK----------EGKLV 343

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK++DEM  R I+PD+ ++S +++ +    +   +      M  K   P V TY++++
Sbjct: 344 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 403

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R+++  EL  EM + G+  +  TY      +   ++ + A  +++QM  DG+ 
Sbjct: 404 KGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGV- 462

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y+IL+       +++    ++  ++ S + PD+ +Y ++I G+C+  K ++   
Sbjct: 463 LPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWD 522

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KG+ P  VT+ T+  G  +  +      L +++ EE
Sbjct: 523 LFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEE 565



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 136/267 (50%), Gaps = 15/267 (5%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--RASLHPSERFEKTIR 61
           SL+ G+C  NRI  A   +G+M+E G +P+  T+N L++G+ R  RAS            
Sbjct: 156 SLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRAS------------ 203

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D M V+G +PD+ ++ IV++   +     L+L  L  M++  I P V  Y++++
Sbjct: 204 EAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTII 263

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+   + DA  L  EM   G+ P+  TYN   +        + A +L   M E  + 
Sbjct: 264 DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN 323

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +++ LI  F+   ++    ++++++    + PD+ +Y+ LI+G C   +  EA  
Sbjct: 324 -PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 382

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F  MI K   P  VT+ TL +G  ++
Sbjct: 383 MFELMISKDCFPNVVTYNTLIKGFCKA 409



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 131/270 (48%), Gaps = 11/270 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI  +C+ +++ +A   L +M++ G EP++VT N LLNG C              I 
Sbjct: 119 YSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCH----------GNRIS 168

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  +M   G +PD  +F+ ++H   R ++   ++  ++ M  KG  P + TY  VV
Sbjct: 169 DAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVV 228

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G I+ A  LL +M +  + P    YN         K+ N A+ L+ +M   G+ 
Sbjct: 229 NGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGI- 287

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN LI       R      + +D+    + P++ +++ LI    ++ K  EA +
Sbjct: 288 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 347

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
            + EMI++ + P   T+ +L  G    D L
Sbjct: 348 LYDEMIKRSIDPDIFTYSSLINGFCMHDRL 377



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 134/299 (44%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ L+    K+N+ D+      +M   G+  N+ TY++L+N  CRR+ L           
Sbjct: 84  FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSL--------- 134

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V  +M   G EPD+ + + +L+ +   ++   ++  +  M E G  P   T+++++
Sbjct: 135 -ALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLI 193

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L    R  +A  L+  MV  G  P   TY         R D + A+ L ++M E G  
Sbjct: 194 HGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKM-EQGKI 252

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P +  YN +I        ++    ++ ++   G+ P++ +Y  LI  LC   +W +A +
Sbjct: 253 EPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 312

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
              +MIE+ + P  VTF  L    ++   L    +L     K+ +D +  T+ S    +
Sbjct: 313 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 371



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 134/282 (47%), Gaps = 16/282 (5%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           ++D A    G+M++    P++V ++ LL+ + +        +F+  I   E    +M+  
Sbjct: 61  KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKM------NKFDLVISLGE----QMQNL 110

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           GI  ++ ++SI+++ + R  Q  L+L  L  M + G  P + T +S++   C   RI DA
Sbjct: 111 GISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDA 170

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             L+G+MV  G  P + T+N           A+ A+ L  +M   G C P++ +Y I++ 
Sbjct: 171 VSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKG-CQPDLVTYGIVVN 229

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
                  +D+   +   ++   + P +  Y  +I  LC  +   +A   F EM  KG+ P
Sbjct: 230 GLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRP 289

Query: 254 QKVTFETLYRGLIQ----SDMLRTWRR-LKKKLDEESITFGS 290
             VT+ +L R L      SD  R     +++K++   +TF +
Sbjct: 290 NVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 331



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 97/191 (50%), Gaps = 11/191 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK  R+D       EM +RG+  N VTY  L++G  +           +   
Sbjct: 399 YNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQ----------ARECD 448

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA+ VF +M   G+ PD+ ++SI+L       + + +L    +++   + P + TY+ ++
Sbjct: 449 NAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMI 508

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + +C  G++ED  +L   +   GV P+  TY      +  +     A  L+R+MKE+G  
Sbjct: 509 EGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEG-P 567

Query: 182 VPNMHSYNILI 192
           +P+  +YN LI
Sbjct: 568 LPDSGTYNTLI 578



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 91/176 (51%), Gaps = 10/176 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI+G+ +    D A+    +M+  GV P+++TY++LL+G+C              + 
Sbjct: 434 YTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGK----------VE 483

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  VF+ ++   +EPD+ +++I++    +A + +   D    +  KG+ P V TY++++
Sbjct: 484 TALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMM 543

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
              C  G  E+A+ L  EM   G  P + TYN   + +    D   + +L R+M+ 
Sbjct: 544 SGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 599



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 87/235 (37%), Gaps = 36/235 (15%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           + +A  +F +M      P +  FS +L   ++ ++  L +     M+  GI   + TYS 
Sbjct: 62  LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++ C C   ++  A  +L +M++ G  P   T N     +      + A+ L  QM E  
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVE-- 179

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
                                              G  PD  ++  LIHGL    +  EA
Sbjct: 180 ----------------------------------MGYQPDSFTFNTLIHGLFRHNRASEA 205

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
                 M+ KG  P  VT+  +  GL +   +     L KK+++  I  G    N
Sbjct: 206 VALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYN 260



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 13/119 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G CK  +++        +  +GV+PNVVTY  +++G CR+              
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKG----------LKE 553

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            A+ +F EM+  G  PD  +++ ++  + R      S +    ++E   C  V   S++
Sbjct: 554 EADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAE---LIREMRSCRFVGDASTI 609


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 151/327 (46%), Gaps = 46/327 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G+C+   +  A     +M+E+G   +VV YN +LNG+C++          K +
Sbjct: 362 IYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKK----------KLL 411

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A  +FDEM  RG+ PD  +F+ ++H + +      +L     M +K I P + TY+ +
Sbjct: 412 ADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNIL 471

Query: 121 VKCLCSCGRIEDAEEL-------------------------LG----------EMVRNGV 145
           +   C    +E A EL                         LG          EM+R G+
Sbjct: 472 IDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGI 531

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P+  T N   K Y    D + A +   +M  +G+  P+  +YN LI  F+    MD   
Sbjct: 532 KPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVG-PDSITYNTLINGFVKGEYMDKAF 590

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            + N ++  GL PD+ +Y ++++G C + + +EA     +MIE+G+ P + T+ TL  G 
Sbjct: 591 FLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGY 650

Query: 266 IQSDMLRTWRRLKKKLDEESITFGSEF 292
           +  D L+   R   ++ +       +F
Sbjct: 651 VSQDNLKEAFRFHDEMLQRGFVPDDDF 677



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 138/284 (48%), Gaps = 11/284 (3%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           SL+ G  K+  +D+A     E+   G+E NV T N+++N +C+          +  I + 
Sbjct: 155 SLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCK----------DHKIDDV 204

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
           +    +M  +GI  D+ +++ +++ Y R      + + +N M  KG+ PT+ TY++V+  
Sbjct: 205 KPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVING 264

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC  GR   A+ +  EM+  G+ P   TYN    E     +   A  ++  M   G+  P
Sbjct: 265 LCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVS-P 323

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++ S++ LIG+      +D     + D+K SGL PD   YT+LI+G C      EA +  
Sbjct: 324 DLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIR 383

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            +M+E+G     V + T+  GL +  +L     L  ++ E  + 
Sbjct: 384 DKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVV 427



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 142/334 (42%), Gaps = 51/334 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK  R   A+    EM+  G+ P+  TYN LL   CR               
Sbjct: 258 YNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCR----------NNNFL 307

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPT-------- 113
            A+ +F +M  RG+ PD+ SFS ++ V SR      +L     MK  G+ P         
Sbjct: 308 EAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILI 367

Query: 114 ---------------------------VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                                      V  Y++++  LC    + DA  L  EMV  GV 
Sbjct: 368 NGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVV 427

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P   T+      +    +   A+ L+  M +  +  P++ +YNILI  F     M+   E
Sbjct: 428 PDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNI-KPDIVTYNILIDGFCKTTEMEKANE 486

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +WN++    + P+  SY +L++G C      EA + + EMI KG+ P  VT  T+ +G  
Sbjct: 487 LWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYC 546

Query: 267 QS-DMLRTWRRLKKKLDE----ESITFGSEFQNY 295
           +S D+ +    L K + E    +SIT+ +    +
Sbjct: 547 RSGDLSKADEFLGKMISEGVGPDSITYNTLINGF 580



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 1/184 (0%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           D   F +++  Y +A +     D    ++ KG   ++   +S++  L   G ++ A E+ 
Sbjct: 114 DNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVY 173

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            E+ R+G+  +  T N            +        M++ G+   ++ +YN LI  +  
Sbjct: 174 NEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGI-FADIVTYNTLINAYCR 232

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
              +    E+ N + G GL P L +Y  +I+GLC+K ++  A   F EM+  GL P   T
Sbjct: 233 EGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTT 292

Query: 258 FETL 261
           + TL
Sbjct: 293 YNTL 296



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 1/204 (0%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           + +      F  +R +G    + + + +L    +     L+ +  N +   GI   V T 
Sbjct: 129 RKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTL 188

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + +V  LC   +I+D +  L +M + G+     TYN     Y        A ++   M  
Sbjct: 189 NIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSG 248

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            GL  P + +YN +I       R    + ++N++   GL PD  +Y  L+   C    + 
Sbjct: 249 KGL-KPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFL 307

Query: 238 EACQYFVEMIEKGLLPQKVTFETL 261
           EA   F +M+ +G+ P  ++F +L
Sbjct: 308 EAKDIFSDMLHRGVSPDLISFSSL 331



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/160 (18%), Positives = 73/160 (45%), Gaps = 18/160 (11%)

Query: 129 RIEDAEELLGEMVRNGVCPSAE-----------------TYNCFFKEYRGRKDANGAMKL 171
           R+ DA+ L+  M+R       E                  ++   + Y   +  N     
Sbjct: 78  RLSDAQTLILRMIRRSGVSRVEIVESLISMSSTCGVDNLVFDLLIRSYVQARKLNEGTDT 137

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
           ++ ++  G  V ++++ N L+G  + +  +D+  E++N++  SG+  ++ +  ++++ LC
Sbjct: 138 FKILRRKGFLV-SINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALC 196

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           +  K  +   + ++M +KG+    VT+ TL     +  +L
Sbjct: 197 KDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLL 236


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 134/265 (50%), Gaps = 11/265 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI G CK+ R+  A   +  MI+RG +P++V+YN L+NG C   S          + 
Sbjct: 284 FNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGS----------VG 333

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A++VFD+M  R   P+V S+  +++ Y +      ++  L  M  K + P   TY+ ++
Sbjct: 334 EAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLL 393

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR     +L+  M  +G      TYN    +Y   +  + A+ L++ + E G+ 
Sbjct: 394 DGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGIS 453

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YNIL+       R+   +EI+  +   G  P++ +Y ++IHGLC++    EA  
Sbjct: 454 -PNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEA 512

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLI 266
              +M+    LP  +TF+T+ R ++
Sbjct: 513 LLYKMVNNNYLPNYITFDTIVRAIL 537



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 132/298 (44%), Gaps = 21/298 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ LI  + ++ ++  A   LG +++ G + +V     L+ G+C +            + 
Sbjct: 108 FSILINAFAQLGQMGFAFSLLGNILKMGFQIDVRILTTLMKGLCLKGR----------VL 157

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  E   RG   D   +  +++   +  + + ++     MK+  + P +  Y++V+
Sbjct: 158 EAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVI 217

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +++A  L  EMV NG+     +YN     +        A+KL  +M   G  
Sbjct: 218 DGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKV 277

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+++++NILI     L R+     +   +   G  PD+ SY  L++G C      EA Q
Sbjct: 278 YPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQ 337

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
            F +M+E+  LP  +++ TL  G  +  M+           +E++   +E  N +  P
Sbjct: 338 VFDKMVERTALPNVISYCTLINGYCKVRMV-----------DEAMVLLTEMHNKNLVP 384



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 123/267 (46%), Gaps = 12/267 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T+L+ G C   R+  A   L E ++RG   + V Y  ++NG+C+              R+
Sbjct: 144 TTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGK----------TRD 193

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A ++F +M+   + P++  ++ V+    +      +      M E GI   V +Y+S++ 
Sbjct: 194 AIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIH 253

Query: 123 CLCSCGRIEDAEELLGEMV-RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             CS GR + A +LL EMV R  V P   T+N            + A  +   M + G  
Sbjct: 254 GFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGW- 312

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SYN L+  +     +   +++++ +      P++ SY  LI+G C+ +   EA  
Sbjct: 313 KPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMV 372

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
              EM  K L+P  VT+  L  GL +S
Sbjct: 373 LLTEMHNKNLVPDTVTYNCLLDGLSKS 399



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 2/192 (1%)

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           I+P + +FSI+++ +++  Q   +   L  + + G    V   ++++K LC  GR+ +A 
Sbjct: 101 IKPSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQIDVRILTTLMKGLCLKGRVLEAV 160

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
            LL E V  G       Y               A++++ +MK+  +  PN+  YN +I  
Sbjct: 161 SLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRV-YPNLIMYNTVIDG 219

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG-LLP 253
                 +D    +  ++  +G+  D+ SY  +IHG C   +++ A +   EM+ +G + P
Sbjct: 220 LCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYP 279

Query: 254 QKVTFETLYRGL 265
              TF  L  GL
Sbjct: 280 DVYTFNILIDGL 291



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 4/121 (3%)

Query: 163 KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS 222
           K  N  + LY  ++      P++ +++ILI  F  L +M     +  ++   G   D+  
Sbjct: 83  KRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQIDVRI 142

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLK 278
            T L+ GLC K +  EA     E +++G    +V + T+  GL +     D ++ + ++K
Sbjct: 143 LTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMK 202

Query: 279 K 279
           K
Sbjct: 203 K 203


>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Glycine max]
          Length = 827

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 139/267 (52%), Gaps = 14/267 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++   C++ +++ A     +MI +G+ P++V+YN ++ G C++  +           
Sbjct: 434 YNIVLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMD---------- 483

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A +V + +   G++P+  +++I++    +    + + +  + M   GI PT  T++S++
Sbjct: 484 DAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSII 543

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+ +A + L   ++    P++ TYNC    Y      + A  +YR+M    + 
Sbjct: 544 NGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEIS 603

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  LI  F   N+MD+  ++ +D+K  GL  D+  Y  LI G C+ Q  + AC+
Sbjct: 604 -PNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACK 662

Query: 242 YFVEMIEKGLLPQKVTFETL---YRGL 265
           +F +++E GL P  + +  +   YR L
Sbjct: 663 FFSKLLEVGLTPNTIVYNIMISAYRNL 689



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 137/320 (42%), Gaps = 44/320 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G CK   +D A   +  +IE G++PN +TY +L+ G  ++              
Sbjct: 469 YNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGD----------CE 518

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +FD+M   GI P   +F+ +++   +  +   + DKLN   ++   PT  TY+ ++
Sbjct: 519 HAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCII 578

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
                 G I+ AE +  EM R+ + P+  TY      +      + A+K++  MK  GL 
Sbjct: 579 DGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLE 638

Query: 181 ---------------------------------CVPNMHSYNILIGMFMALNRMDMVREI 207
                                              PN   YNI+I  +  LN M+    +
Sbjct: 639 LDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNL 698

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
             ++  + +  DL  YT LI GL ++ K   A   + EM+ +G++P    +  L  GL  
Sbjct: 699 HKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCN 758

Query: 268 SDMLRTWRRLKKKLDEESIT 287
              L    ++ K++D  +IT
Sbjct: 759 HGQLENAGKILKEMDGNNIT 778



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 142/287 (49%), Gaps = 13/287 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + S+I G CK+ R+  A   L   I++   P  +TYN +++G  +          E  I 
Sbjct: 539 FNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVK----------EGAID 588

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE V+ EM    I P+V +++ +++ + ++++  L+L   + MK KG+   +  Y++++
Sbjct: 589 SAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLI 648

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    +E+A +   +++  G+ P+   YN     YR   +   A+ L+++M  +   
Sbjct: 649 AGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNK-- 706

Query: 182 VP-NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           +P ++  Y  LI   +   ++    ++++++   G+ PD+  Y +LI+GLC   + + A 
Sbjct: 707 IPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAG 766

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +   EM    + P  + + TL  G  +   L+   RL  ++ ++ + 
Sbjct: 767 KILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLV 813



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 148/359 (41%), Gaps = 60/359 (16%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLN-----GVCRRAS-------- 49
           TSLI G+C    ++ A R   E++E GV PNV  ++VL+      G   +A+        
Sbjct: 331 TSLIKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKC 390

Query: 50  --LHPSE----------RFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
             L P+           R +  + NA  + D     GI   V +++IVL       +   
Sbjct: 391 MGLQPTVFILNFLLKGFRKQNLLENAYLLLDGAVENGI-ASVVTYNIVLLWLCELGKVNE 449

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           + +  + M  KGI P++ +Y+ ++   C  G ++DA E++  ++ +G+ P+A TY    +
Sbjct: 450 ACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILME 509

Query: 158 EYRGRKDANGAMKLYRQMKE--------------DGLC--------------------VP 183
               + D   A  ++ QM                +GLC                    +P
Sbjct: 510 GSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIP 569

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
              +YN +I  ++    +D    ++ ++  S + P++ +YT LI+G C+  K   A +  
Sbjct: 570 TSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMH 629

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR 302
            +M  KGL      + TL  G  +   +    +   KL E  +T  +   N     YR 
Sbjct: 630 DDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRN 688



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 132/323 (40%), Gaps = 60/323 (18%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF---- 56
           ++  L+  + + N+I  A      M+E GV P V   NVLL  + RR  +  + R     
Sbjct: 154 VFNYLLISYVRANKITEAVECFRAMLEDGVVPWVPFVNVLLTAMIRRNMVEDAHRLFDEM 213

Query: 57  -EKTIRN--------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
            E+ I                      AE+ F +   RG++ D  S+SIV+    R    
Sbjct: 214 AERRIYGDCYTLQVLMRACLKGGKFVEAERYFGQAAGRGLKLDAASYSIVIQAVCRGSDL 273

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
            L+   +   +E G  P+  TY++V+      G   +A  L  EMV + V  +       
Sbjct: 274 DLASKLVEGDEELGWVPSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSL 333

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            K Y  R D N A++L+ ++ E G+  PN+  +++LI     +  ++   E++  +K  G
Sbjct: 334 IKGYCVRGDVNSALRLFDEVVEVGV-TPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMG 392

Query: 216 LGPD-----------------------LD-----------SYTMLIHGLCEKQKWKEACQ 241
           L P                        LD           +Y +++  LCE  K  EAC 
Sbjct: 393 LQPTVFILNFLLKGFRKQNLLENAYLLLDGAVENGIASVVTYNIVLLWLCELGKVNEACN 452

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            + +MI KG+ P  V++  +  G
Sbjct: 453 LWDKMIGKGITPSLVSYNHMILG 475



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 119/272 (43%), Gaps = 27/272 (9%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH---------------PSERFEKTI-- 60
           AER+ G+   RG++ +  +Y++++  VCR + L                PSE     +  
Sbjct: 241 AERYFGQAAGRGLKLDAASYSIVIQAVCRGSDLDLASKLVEGDEELGWVPSEGTYAAVIG 300

Query: 61  --------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP 112
                     A ++ DEM    +  +V   + ++  Y        +L   + + E G+ P
Sbjct: 301 ACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVRGDVNSALRLFDEVVEVGVTP 360

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
            VA +S +++     G +E A EL   M   G+ P+    N   K +R +     A  L 
Sbjct: 361 NVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRKQNLLENAYLLL 420

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
               E+G  + ++ +YNI++     L +++    +W+ + G G+ P L SY  +I G C+
Sbjct: 421 DGAVENG--IASVVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCK 478

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           K    +A +    +IE GL P  +T+  L  G
Sbjct: 479 KGCMDDAHEVMNGIIESGLKPNAITYTILMEG 510



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 100/192 (52%), Gaps = 11/192 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+CK+  ++ A +F  +++E G+ PN + YN++++          + R    +
Sbjct: 643 VYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMIS----------AYRNLNNM 692

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +  EM    I  D+  ++ ++    +  +   +LD  + M  +GI P +  Y+ +
Sbjct: 693 EAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVL 752

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC+ G++E+A ++L EM  N + P+   YN     +    +   A +L+ +M + GL
Sbjct: 753 INGLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGL 812

Query: 181 CVPNMHSYNILI 192
            VP+  +Y+IL+
Sbjct: 813 -VPDDTTYDILV 823


>gi|125544731|gb|EAY90870.1| hypothetical protein OsI_12477 [Oryza sativa Indica Group]
          Length = 601

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 132/272 (48%), Gaps = 13/272 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+YGWC++ ++D A+  L  M    V P+VV +N LL G           RFE    
Sbjct: 198 YTALLYGWCRMGKLDEAKHVLARMKAAEVAPDVVVFNTLLAGFV------ADGRFE---- 247

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  EM  RG  P+  S++ ++       +   ++     M+ KG  P   TY ++V
Sbjct: 248 DAFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLV 307

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GRI    E L  M R G+   A  Y  FF  +  ++     ++L  +M+E   C
Sbjct: 308 TAFCKAGRISQGYEFLDVMAREGLRVDAGVYLGFFVAHEKKEQLEECLELMERMRE-CRC 366

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YN++I +   L        +WN+++ + L P +D++ +++ GL  +    EAC 
Sbjct: 367 PPDLSIYNVVIRLACKLGETKQAVALWNEMETNELSPGVDTFAIMVTGLVGQGVLVEACG 426

Query: 242 YFVEMIEKGLL--PQKVTFETLYRGLIQSDML 271
           YF +M+ +GL   PQ    + L   L++   L
Sbjct: 427 YFKDMVGRGLFVAPQYGVLKDLLNSLVRDQKL 458


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 146/275 (53%), Gaps = 11/275 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+  +C+ +++ +A  FLG+M++ G EP++VT+  LLNG CR   ++          +A 
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIY----------DAL 171

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +FD M   G EP+V  ++ ++    ++ Q   +LD LN M+  GI P   TY+S++  L
Sbjct: 172 YMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGL 231

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C+ GR +DA  ++  M +  + P   T+N            + A +LY +M    L  P+
Sbjct: 232 CNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSL-DPD 290

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y++LI      +R+D   +++  +   G  PD+ +Y++LI+G C+ +K +   + F 
Sbjct: 291 IVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFC 350

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
           EM ++G++   VT+  L +G  ++  L     + K
Sbjct: 351 EMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFK 385



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 139/268 (51%), Gaps = 11/268 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I G CK  ++D A   L  M   G+ P+ VTYN L++G+C       S R++   
Sbjct: 188 IYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCN------SGRWD--- 238

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A ++   M  R I PDV +F+ ++    +  +   + +    M  + + P + TYS +
Sbjct: 239 -DATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLL 297

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   R+++AE++ G MV  G  P   TY+     Y   K     MKL+ +M + G+
Sbjct: 298 IYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGV 357

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            V N  +Y +LI  +    ++++  EI+  +   G+ P++ +Y +L+HGLC+  K ++A 
Sbjct: 358 -VRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKAL 416

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
               +M + G+    VT+  + RG+ ++
Sbjct: 417 VILADMQKSGMDADIVTYNIIIRGMCKA 444



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 131/255 (51%), Gaps = 13/255 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI    K  RI  AE    EMI R ++P++VTY++L+ G+C  + L           
Sbjct: 259 FNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLD---------- 308

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE++F  M  +G  PDV ++SI+++ Y ++ + +  +     M ++G+     TY+ ++
Sbjct: 309 EAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLI 368

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G++  AEE+   MV  GV P+  TYN              A+ +   M++ G+ 
Sbjct: 369 QGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGM- 427

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             ++ +YNI+I GM  A    D   +++  +   GL PD+ +YT ++ GL +K    EA 
Sbjct: 428 DADIVTYNIIIRGMCKAGEVAD-AWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEAD 486

Query: 241 QYFVEMIEKGLLPQK 255
             F +M E G+LP +
Sbjct: 487 ALFRKMKEDGILPNE 501



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 108/247 (43%), Gaps = 7/247 (2%)

Query: 47  RASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMK 106
           R  L    R+ K   + +  F  ++ R + P +  FS +L   S+  +  + +     M+
Sbjct: 50  REMLRNGIRYMKLDDSLDLFFHMVQCRPL-PSIADFSRLLSAISKMKKYDVVIYLWEQMQ 108

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
             GI   + T + ++ C C C ++  A   LG+M++ G  P   T+      +       
Sbjct: 109 MLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIY 168

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            A+ ++ +M E G   PN+  YN +I       ++D   ++ N ++  G+ PD  +Y  L
Sbjct: 169 DALYMFDRMVEMGY-EPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSL 227

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKL 281
           I GLC   +W +A +    M ++ + P   TF  L    ++   +     L     ++ L
Sbjct: 228 ISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSL 287

Query: 282 DEESITF 288
           D + +T+
Sbjct: 288 DPDIVTY 294


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 140/281 (49%), Gaps = 11/281 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+   CK  RI  A   L +MIE G  PNVVTYN L+NG C+  ++           
Sbjct: 105 YTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMD---------- 154

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F++M      PDV +++I++  Y +  +PQ     L  M + G  P   TY++++
Sbjct: 155 EAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLM 214

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G+  DA  L   M+R    PS  T+N     +      + A +L++ M + G C
Sbjct: 215 DSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRG-C 273

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++++YNI+I      NR+D  R++   +  +G  PD+ +Y  ++ GLC+  +  EA +
Sbjct: 274 LPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYE 333

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
            +  +   G     VT  TL  GL +S  L    +L ++++
Sbjct: 334 VYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREME 374



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 140/285 (49%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CK  R     + L EM++ G EPN +TYN L++      SL  S ++     
Sbjct: 175 YNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMD------SLVKSGKYIDAFN 228

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+     M  R  +P   +F++++ ++ +  Q  L+ +    M ++G  P + TY+ ++
Sbjct: 229 LAQM----MLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMI 284

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI+DA +LL  M   G  P   TYN            + A ++Y  ++  G  
Sbjct: 285 SGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYF 344

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +  +    ++ G+  +  R+D   ++  +++ +G  PD+ +YT+LIHG C+  +  ++  
Sbjct: 345 LDVVTCSTLIDGLCKS-RRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLA 403

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +F EM++KG +P  +T+  +   L +S  +R    L K + E  +
Sbjct: 404 FFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 137/292 (46%), Gaps = 27/292 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR-----ASLH----- 51
           Y++LI G+CK      A R L EM +RG+ P+   YN ++ G+C       A +H     
Sbjct: 36  YSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ 95

Query: 52  ----PS--------ERFEKTIR--NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
               PS        +   K+ R  +A  + ++M   G  P+V +++ +++ + +      
Sbjct: 96  RHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDE 155

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           ++   N M E    P V TY+ ++   C   R +D  +LL EMV+ G  P+  TYN    
Sbjct: 156 AVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMD 215

Query: 158 EYRGRKDANGAMKLYRQM-KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                     A  L + M + D  C P+  ++N++I MF  + ++D+  E++  +   G 
Sbjct: 216 SLVKSGKYIDAFNLAQMMLRRD--CKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGC 273

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            PD+ +Y ++I G C   +  +A Q    M E G  P  VT+ ++  GL ++
Sbjct: 274 LPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKA 325



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 106/212 (50%), Gaps = 2/212 (0%)

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           +K  + A  +F         PD  ++S +++ + +A   Q +   L+ M+++GI P  A 
Sbjct: 11  KKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAV 70

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y++++K LC  GR++ A     +M R+   PS  TY             + A  +   M 
Sbjct: 71  YNTIIKGLCDNGRVDSALVHYRDMQRHCA-PSVITYTILVDALCKSARISDASLILEDMI 129

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           E G C PN+ +YN LI  F  L  MD    ++N +  +   PD+ +Y +LI G C++++ 
Sbjct: 130 EAG-CAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERP 188

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           ++  +   EM++ G  P  +T+ TL   L++S
Sbjct: 189 QDGAKLLQEMVKYGCEPNFITYNTLMDSLVKS 220



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 106/231 (45%), Gaps = 12/231 (5%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
            P+ +TY+ L+NG C+           +  + A ++ DEM  RGI P    ++ ++    
Sbjct: 30  SPDSITYSTLINGFCK----------ARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLC 79

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
              +   +L     M ++   P+V TY+ +V  LC   RI DA  +L +M+  G  P+  
Sbjct: 80  DNGRVDSALVHYRDM-QRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVV 138

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           TYN     +    + + A+ L+ QM E+  C P++ +YNILI  +    R     ++  +
Sbjct: 139 TYNTLINGFCKLGNMDEAVVLFNQMLENS-CSPDVFTYNILIDGYCKQERPQDGAKLLQE 197

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   G  P+  +Y  L+  L +  K+ +A      M+ +   P   TF  +
Sbjct: 198 MVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLM 248



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 7/184 (3%)

Query: 109 GIC-PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG 167
           G+C P   TYS+++   C     + A  LL EM + G+ P    YN   K        + 
Sbjct: 27  GLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDS 86

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           A+  YR M+    C P++ +Y IL+       R+     I  D+  +G  P++ +Y  LI
Sbjct: 87  ALVHYRDMQRH--CAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLI 144

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +G C+     EA   F +M+E    P   T+  L  G  + +  +       KL +E + 
Sbjct: 145 NGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDG----AKLLQEMVK 200

Query: 288 FGSE 291
           +G E
Sbjct: 201 YGCE 204



 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/104 (21%), Positives = 51/104 (49%), Gaps = 4/104 (3%)

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N L+  F+   +     +++ +       PD  +Y+ LI+G C+ + +++A +   EM +
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 249 KGLLPQKVTFETLYRGLIQS----DMLRTWRRLKKKLDEESITF 288
           +G++P    + T+ +GL  +      L  +R +++      IT+
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITY 105


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 150/309 (48%), Gaps = 30/309 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------------ 48
           +YT+LI G CK   I+ A  F  +M E G+  N  T+ VL+NG+ ++             
Sbjct: 199 IYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKM 258

Query: 49  ---SLHPSERFEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
               L P+      + N          A  +FDEMR RG+E +V +++ ++    R  + 
Sbjct: 259 KINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERV 318

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +   ++ MK+  + P + TY++++   C  G ++ A  LL ++  NG+ PS  TYN  
Sbjct: 319 WEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNIL 378

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            + Y    +  G   L R+M+  G+  P+  +  +LI  ++ L  M+   +I++ ++  G
Sbjct: 379 IEGYSKAGNWKGVADLAREMEGRGIS-PSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFG 437

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD----ML 271
           L PD+  Y +LIHGLC K   KE+ + F  M E  + P  V + T+  G  + D     L
Sbjct: 438 LVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRAL 497

Query: 272 RTWRRLKKK 280
           R  R ++ K
Sbjct: 498 RLLREMEAK 506



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 130/287 (45%), Gaps = 46/287 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+  +C   +I  A     EM ERGVE NVVTYN L+ G+CR          E+ + 
Sbjct: 270 YNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCR----------EERVW 319

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK+ D+M+   + P++ +++ ++  +        +   L+ +K  G+ P++ TY+ ++
Sbjct: 320 EAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILI 379

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +     G  +   +L  EM   G+ PS  T       Y   ++   A ++Y  M++ GL 
Sbjct: 380 EGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGL- 438

Query: 182 VPNMHSYNILI-------------GMFMALNRMDM----------------------VRE 206
           VP+++ Y +LI              +F ++  M +                         
Sbjct: 439 VPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALR 498

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
           +  +++  GL P++ SY+ +I  LC+  KW+EA     +MIE  L P
Sbjct: 499 LLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKP 545



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 139/324 (42%), Gaps = 51/324 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGV--EPNVVTYNVLLNGVCRRASLHPSERFEK 58
           +Y S+I    K   +D A  F  EM+++G+   PN+  +N LL  + R      S  FEK
Sbjct: 95  LYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNI--FNSLLGSLVR------SNCFEK 146

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
               A   F+E++ R ++ DV SF I++           S   L  +++ G+ P V  Y+
Sbjct: 147 ----AWLFFNELKER-VKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYT 201

Query: 119 SVVKCLCSCGRIE-----------------------------------DAEELLGEMVRN 143
           +++   C  G IE                                   D  +L  +M  N
Sbjct: 202 TLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKIN 261

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+ P+  TYNC   EY G      A  L+ +M+E G+   N+ +YN LIG      R+  
Sbjct: 262 GLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGV-EANVVTYNTLIGGMCREERVWE 320

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             ++ + +K + + P+L +Y  LI G C+     +A     ++   GL P  VT+  L  
Sbjct: 321 AEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIE 380

Query: 264 GLIQSDMLRTWRRLKKKLDEESIT 287
           G  ++   +    L ++++   I+
Sbjct: 381 GYSKAGNWKGVADLAREMEGRGIS 404



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 10/155 (6%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T LI  + ++  ++ A +    M + G+ P+V  Y VL++G+C + ++          + 
Sbjct: 411 TVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNM----------KE 460

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           + K+F  M    +EP    ++ ++H Y +      +L  L  M+ KG+ P VA+YSS++ 
Sbjct: 461 SSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIG 520

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
            LC  G+ E+AE LL +M+   + PSA   N   K
Sbjct: 521 VLCKDGKWEEAEVLLDKMIELQLKPSASILNMISK 555



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 85/203 (41%), Gaps = 6/203 (2%)

Query: 83  SIVLHVYS-RAHQPQLSLDKLNFMKEKGICPTVAT---YSSVVKCLCSCGRIEDAEELLG 138
           S++L + S +   P  ++  L     +   P++ T   Y S++        ++ A     
Sbjct: 58  SLILQILSNKISSPFFTVPSLLHHLTQNQNPSMTTALLYESIINAHLKSQLLDKALIFFN 117

Query: 139 EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL 198
           EMV  G+      +N              A   + ++KE      +++S+ I+I      
Sbjct: 118 EMVDKGLVFRPNIFNSLLGSLVRSNCFEKAWLFFNELKER--VKFDVYSFGIMIKGCCEN 175

Query: 199 NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
             +D   ++   ++  GL P++  YT LI G C+    + A  +F +M E GL+  + TF
Sbjct: 176 GNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTF 235

Query: 259 ETLYRGLIQSDMLRTWRRLKKKL 281
             L  GL +  + +    L +K+
Sbjct: 236 TVLINGLFKKGLKKDGFDLFEKM 258



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 14/92 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I+G+CK +    A R L EM  +G+ PNV +Y+ ++  +C+        ++E+  
Sbjct: 479 IYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDG------KWEE-- 530

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92
             AE + D+M    ++P  +    +L++ S+A
Sbjct: 531 --AEVLLDKMIELQLKPSAS----ILNMISKA 556


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 136/268 (50%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ L+   CK   I  A+  L  M+++GV P+VVTY+ L++G C              + 
Sbjct: 272 FSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYC----------LVNEVN 321

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ VF  M   G+ P   S++I+++   +      +L     M  KGI P   TY+S++
Sbjct: 322 KAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLI 381

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GRI  A +L+ EM  NG+     TYN            + A+ L +++K+ G+ 
Sbjct: 382 DGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGI- 440

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+M++YNILI       R+   ++++ D+   G   +  +Y ++I+GLC++  + EA  
Sbjct: 441 QPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEV 500

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              +M   G++P  VT+ET+ R L + D
Sbjct: 501 LLSKMENNGIIPDAVTYETIIRALFRKD 528



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 139/285 (48%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CKI     A + L ++  + V  +VV YN+++N +C+          +K + 
Sbjct: 167 YRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCK----------DKAVS 216

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A +++ EM  + I PDV +F+ ++  +    Q + +    + M  K I P V T+S +V
Sbjct: 217 DAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILV 276

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G I  A+ +L  M++ GV P   TY+     Y    + N A  ++  M   G+ 
Sbjct: 277 DALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVA 336

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ HSYNI+I     +  +D    ++ ++   G+ PD  +Y  LI GLC+  +   A Q
Sbjct: 337 -PHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQ 395

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM   G+    +T+ +L   L ++  +     L KK+ ++ I
Sbjct: 396 LVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGI 440



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 134/281 (47%), Gaps = 11/281 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY  +I   CK   +  A +   EMI + + P+VVT+N L+ G C    L          
Sbjct: 201 MYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQL---------- 250

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  +F EM ++ I PDV +FSI++    +      + + L  M ++G+ P V TYSS+
Sbjct: 251 KEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSL 310

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C    +  A+ +   M R GV P A +YN         K  + A+ L+++M   G+
Sbjct: 311 MDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGI 370

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  +YN LI     L R+    ++ +++  +G+  D+ +Y  LI  LC+     +A 
Sbjct: 371 A-PDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAI 429

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
               ++ ++G+ P   T+  L  GL +   L+  + + + L
Sbjct: 430 ALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDL 470



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 90/179 (50%), Gaps = 10/179 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G CK+ RI  A + + EM   G+  +++TYN L++ +C+      +   +K I 
Sbjct: 377 YNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCK------NHHIDKAIA 430

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             +K+ D+    GI+P + +++I++    +  + + + D    +  KG      TY+ ++
Sbjct: 431 LVKKIKDQ----GIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMI 486

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             LC  G   +AE LL +M  NG+ P A TY    +    + +   A KL R+M   GL
Sbjct: 487 NGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREMIIRGL 545



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/297 (20%), Positives = 118/297 (39%), Gaps = 59/297 (19%)

Query: 28  RGVEPNVVTYNVLLNGVCRRASL---------------HPSERFEKTIRN---------- 62
           +G+ P +VT+N+L+N  C    +               HP+     T+ N          
Sbjct: 88  KGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKE 147

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A    D +   G   D  S+  +++   +  + + +L  L  ++ K +   V  Y+ ++ 
Sbjct: 148 ALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIIN 207

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK------ 176
            LC    + DA +L  EM+   + P   T+N     +        A  L+ +M       
Sbjct: 208 SLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINP 267

Query: 177 --------EDGLC--------------------VPNMHSYNILIGMFMALNRMDMVREIW 208
                    D LC                    +P++ +Y+ L+  +  +N ++  + ++
Sbjct: 268 DVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVF 327

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           + +   G+ P   SY ++I+GL + +   EA   F EM  KG+ P  VT+ +L  GL
Sbjct: 328 STMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGL 384



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 50  LHP----SERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ--LSLDKLN 103
           LHP    S  F+  + N    F  M      P +  F+ +L    +A+      ++   +
Sbjct: 26  LHPFIPKSNDFD--VNNDVSSFHRMLRMRPTPSIVEFNKILGSIVKANNNHYTTAISLSH 83

Query: 104 FMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163
            ++ KGI PT+ T++ +V C C  G +  A  +  ++++ G  P+  T+N          
Sbjct: 84  QLELKGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNG 143

Query: 164 DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSY 223
               A+  +  +   G  +  + SY  LI     +       ++   ++G  +  D+  Y
Sbjct: 144 KLKEALHFHDHVIALGFHLDQV-SYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMY 202

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            ++I+ LC+ +   +A Q + EMI K + P  VTF +L  G 
Sbjct: 203 NIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGF 244



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 1/115 (0%)

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           A+ L  Q++  G+  P + ++NIL+  +  L  M     I+  +   G  P   ++  LI
Sbjct: 78  AISLSHQLELKGI-TPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLI 136

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           +G+C   K KEA  +   +I  G    +V++ TL  GL +    R   ++ KK++
Sbjct: 137 NGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIE 191


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 141/283 (49%), Gaps = 11/283 (3%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +LI    +I  +++A R   E+   GV  NV T N+++N +C+   +     F       
Sbjct: 195 ALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTF------- 247

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
                E++ +G+ PD+ +++ ++  YS     + + + ++ M  KG  P V TY++V+  
Sbjct: 248 ---LSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVING 304

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC  G+ E A+E+  EM+R+G+ P + TY     E   + DA     ++  M+   + VP
Sbjct: 305 LCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDV-VP 363

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++  ++ ++ +F     +D     +N VK +GL PD   YT+LI G C K    EA    
Sbjct: 364 DLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLR 423

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            EM+++G     VT+ T+  GL +  ML    +L  ++ E  +
Sbjct: 424 NEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGL 466



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 154/331 (46%), Gaps = 52/331 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G+C+   I  A     EM+++G   +VVTYN +L+G+C+R          K +
Sbjct: 402 IYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKR----------KML 451

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVL-------------HVYSRAHQPQLSLDKLNF--- 104
             A+K+F+EM  RG+ PD  + +I++              ++ +  + ++ LD + +   
Sbjct: 452 GEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTL 511

Query: 105 -------------------MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
                              M  K I PT  ++S +V  LCS G + +A  +  EM+   +
Sbjct: 512 LDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSI 571

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD--- 202
            P+    N   K Y    +A+       +M  +G  VP+  SYN LI  F+    M    
Sbjct: 572 KPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGF-VPDCISYNTLIYGFVKEENMSKAF 630

Query: 203 -MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            +V+++  + K  GL PD+ +Y  ++HG C + + KEA     +MIE+G+ P + T+ +L
Sbjct: 631 GLVKKM--EEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSL 688

Query: 262 YRGLIQSDMLRTWRRLKKKLDEESITFGSEF 292
             G +  D L    R   ++ +   +   +F
Sbjct: 689 INGFVSQDNLTEAFRFHDEMLQRGFSPDDKF 719



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 129/283 (45%), Gaps = 15/283 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK  + + A+    EM+  G+ P+  TY  LL   C++     +E       
Sbjct: 298 YNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETE------- 350

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F +MR R + PD+  FS ++ +++R+     +L   N +KE G+ P    Y+ ++
Sbjct: 351 ---NIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILI 407

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G I +A  L  EM++ G      TYN        RK    A KL+ +M E GL 
Sbjct: 408 QGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGL- 466

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ ++  ILI     L  +    E++  +K   +  D+ +Y  L+ G  +      A +
Sbjct: 467 FPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKE 526

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLKKK 280
            + +M+ K +LP  ++F  L   L      S+  R W  +  K
Sbjct: 527 IWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISK 569



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 1/204 (0%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           + +R A + F  +R +G    + + + ++    R    +L+      +   G+   V T 
Sbjct: 169 RKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTL 228

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + +V  LC  G++E     L E+   GV P   TYN     Y  +     A +L   M  
Sbjct: 229 NIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPS 288

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G   P +++YN +I       + +  +E++ ++  SGL PD  +Y  L+   C+K    
Sbjct: 289 KGFS-PGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAV 347

Query: 238 EACQYFVEMIEKGLLPQKVTFETL 261
           E    F +M  + ++P  V F ++
Sbjct: 348 ETENIFSDMRSRDVVPDLVCFSSM 371



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 86/180 (47%), Gaps = 1/180 (0%)

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           F +++  + +A + + + +    ++ KG   ++   ++++  L   G +E A  +  E+ 
Sbjct: 158 FDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEIS 217

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
           R+GV  +  T N                    +++E G+  P++ +YN LI  + +   M
Sbjct: 218 RSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGV-YPDIVTYNTLISAYSSQGLM 276

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   E+ + +   G  P + +Y  +I+GLC+  K++ A + F EM+  GL P   T+ +L
Sbjct: 277 EEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSL 336



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 76/166 (45%), Gaps = 18/166 (10%)

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR--GRKDA----- 165
           T  + S+++  L   GR+ DA+  +  M+R       E  N     Y   G  D+     
Sbjct: 102 TSLSLSAMIHILVRSGRLSDAQSCVLRMIRRSGVSRVEIVNSLVSTYSNCGSNDSVFDLL 161

Query: 166 ----------NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                       A + +  ++  G  V ++ + N LIG  + +  +++   I+ ++  SG
Sbjct: 162 IRTFVQARKLREAYEAFTLLRSKGYTV-SIDACNALIGSLVRIGWVELAWRIYQEISRSG 220

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +G ++ +  ++++ LC+  K ++   +  E+ EKG+ P  VT+ TL
Sbjct: 221 VGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTL 266


>gi|222625312|gb|EEE59444.1| hypothetical protein OsJ_11623 [Oryza sativa Japonica Group]
          Length = 589

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 132/272 (48%), Gaps = 13/272 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+YGWC++ ++D A+  L  M    V P+VV +N LL G           RFE    
Sbjct: 186 YTALLYGWCRMGKLDEAKHVLARMKAAEVAPDVVVFNTLLAGFV------ADGRFE---- 235

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  EM  RG  P+  S++ ++       +   ++     M+ KG  P   TY ++V
Sbjct: 236 DAFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLV 295

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GRI    E L  M R G+   A  Y  FF  +  ++     ++L  +M+E   C
Sbjct: 296 TAFCKAGRISQGYEFLDVMAREGLRVDAGVYLGFFVAHEKKEQLEECLELMERMRE-CRC 354

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YN++I +   L        +WN+++ + L P +D++ +++ GL  +    EAC 
Sbjct: 355 PPDLSIYNVVIRLACKLGETKQAVALWNEMETNELSPGVDTFAIMVTGLVGQGVLVEACG 414

Query: 242 YFVEMIEKGLL--PQKVTFETLYRGLIQSDML 271
           YF +M+ +GL   PQ    + L   L++   L
Sbjct: 415 YFKDMVGRGLFVAPQYGVLKDLLNSLVRDQKL 446


>gi|222631252|gb|EEE63384.1| hypothetical protein OsJ_18196 [Oryza sativa Japonica Group]
          Length = 378

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 139/258 (53%), Gaps = 12/258 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+  WC    +  A R   EM+E G++P+VV +N ++ G+ R     P         
Sbjct: 73  YTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLR-GQRRPE-------- 123

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F+ M+ +G  P+V ++++++  + +  +  +++     M++ G  P VATY+ ++
Sbjct: 124 -AVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLL 182

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               +  R++    LL EM + G  P   TYN   K    R   + A ++Y++M + GL 
Sbjct: 183 VGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGL- 241

Query: 182 VPNMHSYNILIGMFMALNRMDMVR-EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            P +H+YN+++  +    R  M+   +W ++   G+ PD++SYT+ I+G     + +EAC
Sbjct: 242 EPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEAC 301

Query: 241 QYFVEMIEKGLLPQKVTF 258
           +Y  EMI+KG+   ++ +
Sbjct: 302 KYIEEMIQKGMKTPQIDY 319



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 114/242 (47%), Gaps = 4/242 (1%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           I+NA  VF+ MR  G +  V SF+ +L   ++    + +    + M+++   P + +Y++
Sbjct: 17  IKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRMRDR-YAPDLRSYTA 75

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMKED 178
           ++   C+   + +A  +  EM+ NG+ P    +N   +   RG++    A+K++  MK  
Sbjct: 76  LMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPE-AVKMFELMKAK 134

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G   PN+ +Y +LI       +MDM    + +++  G  PD+ +YT L+ G    ++   
Sbjct: 135 G-PAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDR 193

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
                 EM +KG  P   T+  L + L   +M     R+ KK+ ++ +       N   K
Sbjct: 194 VTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMK 253

Query: 299 PY 300
            Y
Sbjct: 254 SY 255



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 11/159 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ G+    R+D     L EM ++G  P+  TYN L+  +  R              
Sbjct: 178 YTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNR----------NMPD 227

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP-QLSLDKLNFMKEKGICPTVATYSSV 120
           +A +++ +M  +G+EP + ++++++  Y    +   +       M  KGICP V +Y+  
Sbjct: 228 DAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVF 287

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           +      GR E+A + + EM++ G+      YN F  ++
Sbjct: 288 INGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAADF 326


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 144/280 (51%), Gaps = 11/280 (3%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           SL+ G  KI+ +++A     E++  G+E NV T N+++N +C+       + F       
Sbjct: 88  SLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSF------- 140

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
                EM   GI  D+ +++ ++  Y R    + + + +N M +KG+ P++ TY++++  
Sbjct: 141 ---LSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIING 197

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC  GR   A+ +L EM+  G+ P   TYN    E   R + + A +++ +M   G+ VP
Sbjct: 198 LCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGV-VP 256

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++ S++ LI +F     +D     + D+K  GL PD   YT+L+HG C      EA +  
Sbjct: 257 DLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIR 316

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            EM+E+G +   + + T+  GL +  ML    +L  ++ E
Sbjct: 317 DEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVE 356



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 144/315 (45%), Gaps = 44/315 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT L++G+C+   +  A +   EM+E+G   +V+ YN +LNG+C+          EK +
Sbjct: 295 IYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCK----------EKML 344

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A+K+FDEM  RG  PD  +F+ ++H + +      +L     M ++ I P +  Y+++
Sbjct: 345 TDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTL 404

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G +E A EL   M+   + P+  TY      Y      + A +L+  M E G+
Sbjct: 405 IDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGI 464

Query: 181 ----------------------------------CVPNMHSYNILIGMFMALNRMDMVRE 206
                                               P+  SYN LI  F+  + MD    
Sbjct: 465 KPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFL 524

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
             N ++  GL PD+ +Y ++++G C + + +EA     +MIEKG+ P + T+  L  G +
Sbjct: 525 WINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHV 584

Query: 267 QSDMLRTWRRLKKKL 281
             D L    R   ++
Sbjct: 585 TQDNLNEAFRFHDEM 599



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 128/255 (50%), Gaps = 11/255 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI+G C+   +  A    G M +R ++P++V YN L++G C+   +           
Sbjct: 366 FTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEK--------- 416

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +++D M  R I P+  ++ I+++ Y        +    + M EKGI PT+ T ++V+
Sbjct: 417 -ASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVI 475

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C  G    A+E LG M+  GV P   +YN     +    + + A     +M+++GL 
Sbjct: 476 KGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGL- 534

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +YN+++  F    RM     +   +   G+ PD  +YT LI+G   +    EA +
Sbjct: 535 LPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFR 594

Query: 242 YFVEMIEKGLLPQKV 256
           +  EM+++G  P  V
Sbjct: 595 FHDEMLQRGFAPDDV 609



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 133/302 (44%), Gaps = 46/302 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK  R   A+  L EM+  G+ P+  TYN LL   CRR +            
Sbjct: 191 YNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSE--------- 241

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP--------- 112
            A+++F EM  +G+ PD+ SFS ++ V+SR      +L     MK+ G+ P         
Sbjct: 242 -AKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLM 300

Query: 113 --------------------------TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                                      V  Y++++  LC    + DA++L  EMV  G  
Sbjct: 301 HGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGAL 360

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P   T+      +    +   A+ L+  M +  +  P++ +YN LI  F  +  M+   E
Sbjct: 361 PDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNI-KPDIVAYNTLIDGFCKVGEMEKASE 419

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +W+ +    + P+  +Y +LI+  C      EA + +  MIEKG+ P  VT  T+ +G  
Sbjct: 420 LWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYC 479

Query: 267 QS 268
           +S
Sbjct: 480 RS 481



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 113/265 (42%), Gaps = 9/265 (3%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRAS--------LHPSERF 56
           +++ + +  R+  A+  +  MI R     V     L++ +C            L  +   
Sbjct: 1   MVHVFVRSRRLSDAQALILRMIRRSGVSRVEVVEALVSSMCGNCGTNNLVFDLLIRTYVQ 60

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
            + +R   + F  +R +G    + + + +L    +    +L+ +    +   GI   V T
Sbjct: 61  ARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYT 120

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
            + +V  LC  G+ +D +  L EM  NG+     TYN     Y        A ++   M 
Sbjct: 121 LNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMA 180

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           + GL  P++ +YN +I       R    + I  ++   GL PD  +Y  L+   C +  +
Sbjct: 181 DKGL-KPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNF 239

Query: 237 KEACQYFVEMIEKGLLPQKVTFETL 261
            EA + F EM+ +G++P  V+F +L
Sbjct: 240 SEAKEIFGEMLRQGVVPDLVSFSSL 264


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 151/324 (46%), Gaps = 61/324 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFE---- 57
           Y SLI G+CK   +  A    G++   G+ P+V+TYN+LL+G CR   L  + RF+    
Sbjct: 375 YNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMV 434

Query: 58  ------------------KTIRNAEKV---FDEMRVRGIEPDVTSFS------IVLHVYS 90
                             + +RN   V   FDEM  +G++PD  +++      ++L   S
Sbjct: 435 EQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTS 494

Query: 91  RAHQPQ-------LSLDKLNF----------------------MKEKGICPTVATYSSVV 121
            A Q         +S D + +                      M   G+ P   TY+ ++
Sbjct: 495 EAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLI 554

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR+ +A ++   M+ +G+ PSA TY  F   Y  R +   A   +++M E+G+ 
Sbjct: 555 HAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGV- 613

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +YN+LI     + R ++  + ++++   GL P+  +YT+LI G C++  W+EA +
Sbjct: 614 RPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIR 673

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            + EM + G+ P   T   L++G 
Sbjct: 674 LYSEMHQHGIHPDHCTHNALFKGF 697



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 139/297 (46%), Gaps = 27/297 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIER--GVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           Y +L+  + +  R+D A + L EM  R  G  P+ VTYNV++NG+ R+  L  + +    
Sbjct: 234 YNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDR 293

Query: 60  IRNAEKV----FD--------------------EMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           +R ++K     F+                    EM   GI P V +++ ++H   R+   
Sbjct: 294 MRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNV 353

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + +  K   M+  G+ P + TY+S++   C  G +++A  L G++ R G+ PS  TYN  
Sbjct: 354 EAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNIL 413

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y    D   A +  ++M E G C P++ +Y IL+     +  + MVRE ++++   G
Sbjct: 414 LDGYCRLGDLEEARRFKQEMVEQG-CQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKG 472

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
           L PD  +Y   I          EA Q    MI +G+    VT+     GL +S  L+
Sbjct: 473 LQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLK 529



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 126/264 (47%), Gaps = 16/264 (6%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           EM   GV P +   N++L  +          R E    +   V+ EM   GIEP + +++
Sbjct: 186 EMAHHGVPPFIKECNLVLRAL----------RDEARWDDMRSVYAEMLQLGIEPSIVTYN 235

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEK--GICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
            +L  + R  +   +   L  M+ +  G  P+  TY+ V+  L   G +E A +L+  M 
Sbjct: 236 TLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRM- 294

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNR 200
           R     SA T+N     Y  R     A  L  +M+ +G+ VP + +YN +I GMF + N 
Sbjct: 295 RMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEGI-VPTVVTYNTIIHGMFRSGN- 352

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           ++  R  + +++  GL PDL +Y  LI+G C+    KEA   F ++   GL P  +T+  
Sbjct: 353 VEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNI 412

Query: 261 LYRGLIQSDMLRTWRRLKKKLDEE 284
           L  G  +   L   RR K+++ E+
Sbjct: 413 LLDGYCRLGDLEEARRFKQEMVEQ 436



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 41/224 (18%)

Query: 90  SRAHQPQ------LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
           +RA  P       L L     M   G+ P +   + V++ L    R +D   +  EM++ 
Sbjct: 166 TRARNPAPSTCSTLCLAAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQL 225

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE-DGLCVPNMHSYNILIGMF------- 195
           G+ PS  TYN     +      + A KL R+M+   G C+P+  +YN++I          
Sbjct: 226 GIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELE 285

Query: 196 ---MALNRMDMVRE------------------------IWNDVKGSGLGPDLDSYTMLIH 228
                ++RM M ++                        +  +++  G+ P + +Y  +IH
Sbjct: 286 KAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIH 345

Query: 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
           G+      + A   FVEM   GLLP  +T+ +L  G  ++  L+
Sbjct: 346 GMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLK 389


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 147/287 (51%), Gaps = 11/287 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY +LI G+C + ++D+A ++  +M++RG+   V TYN+L++ +            +   
Sbjct: 221 MYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALF----------MDARA 270

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A  V +EM+  G  PDV +++I+++ Y +    + +L+    M +KG+  T  TY+S+
Sbjct: 271 SDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSL 330

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +      G++++ + L    V+ G+ P    YN     +    D   A ++  +M++  +
Sbjct: 331 IYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRI 390

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  +YN L+  F  L R+D  R + +++   G+ PDL SY  LI G   K   K+A 
Sbjct: 391 P-PDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDAL 449

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +   EM++KG  P  +T+  L +GL +         L K++  + IT
Sbjct: 450 RVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGIT 496



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 140/304 (46%), Gaps = 18/304 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y ++I G+C   R+  A   + EM ERG + P+  TY  L++G C+   +          
Sbjct: 150 YNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRME--------- 200

Query: 61  RNAEKVFDEMRVRG-IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
            +A KVFDEM  +G + P    ++ ++  Y    +  ++L     M ++GI  TVATY+ 
Sbjct: 201 -DAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNL 259

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  L    R  DA  +L EM +NG  P   TYN     Y    +   A++++ +M + G
Sbjct: 260 LMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKG 319

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +    + +Y  LI +F    ++     ++N     G+ PD+  Y  LI+  C     + A
Sbjct: 320 VRATAV-TYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERA 378

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQN 294
            +   EM +K + P  +T+ TL RG      L   R L     K+ +  + +++ +    
Sbjct: 379 YEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISG 438

Query: 295 YHFK 298
           Y  K
Sbjct: 439 YSMK 442



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 25/176 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC---------------R 46
           YTSLIY + +  ++   +R     +++G+ P+VV YN L+N  C                
Sbjct: 327 YTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEME 386

Query: 47  RASLHPSERFEKTI----------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +  + P +    T+            A  + DEM  RGI+PD+ S++ ++  YS     +
Sbjct: 387 KKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIK 446

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
            +L   + M +KG  PT+ TY+++++ LC   + +DAE L+ EMV  G+ P   TY
Sbjct: 447 DALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTY 502



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 7/157 (4%)

Query: 110 ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAM 169
           +C T  T++ +++ LC+ G+   A ELL +M R    P+A TYN     +  R     A+
Sbjct: 114 LCTT--TFNIMLRHLCATGKPVRALELLRQMPR----PNAVTYNTVIAGFCARGRVQAAL 167

Query: 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG-LGPDLDSYTMLIH 228
           ++ R+M+E G   P+ ++Y  LI  +  + RM+   ++++++   G + P    Y  LI 
Sbjct: 168 EVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIG 227

Query: 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           G C+  K   A QY  +M+++G+     T+  L   L
Sbjct: 228 GYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHAL 264


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 149/312 (47%), Gaps = 27/312 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKTI 60
           +T +I G CK   +  A   L EM+ RG +PNV T+  L++G+C++     + R F K +
Sbjct: 275 FTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLV 334

Query: 61  RN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           R+                         AE +   M+ +G+ P+  +++ ++  + +A   
Sbjct: 335 RSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNF 394

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + + + +N M E+G  P V TY+++V  LC  GR+++A ++L    RNG+     TY   
Sbjct: 395 ERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTIL 454

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
             E+  + +   A+ L+ +M + G+  P++HSY  LI +F    RM      + +    G
Sbjct: 455 ISEHCKQAEIKQALVLFNKMVKSGI-QPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFG 513

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           L P   +YT +I G C +   + A ++F  M + G     +T+  L  GL +   L   R
Sbjct: 514 LVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEAR 573

Query: 276 RLKKKLDEESIT 287
            L   + E+ +T
Sbjct: 574 CLYDAMIEKGLT 585



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 151/355 (42%), Gaps = 67/355 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIER--------------------------------- 28
           Y  ++ G+CK+  +  ++R+LG MIER                                 
Sbjct: 205 YRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFC 264

Query: 29  --GVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTIRNA---------------------E 64
             G+ PN++ +  ++ G+C+R S+  + E  E+ +                        E
Sbjct: 265 EMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTE 324

Query: 65  KVF----DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           K F      +R    +P+V +++ ++  Y R  +   +   L+ MKE+G+ P   TY+++
Sbjct: 325 KAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTL 384

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G  E A EL+  M   G  P+  TYN        +     A K+ +    +GL
Sbjct: 385 IDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGL 444

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
               + +Y ILI        +     ++N +  SG+ PD+ SYT LI   C +++ KE+ 
Sbjct: 445 DADKV-TYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESE 503

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE-----ESITFGS 290
            +F E +  GL+P   T+ ++  G  +   LR   +   ++ +     +SIT+G+
Sbjct: 504 MFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGA 558



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 131/300 (43%), Gaps = 43/300 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G CK    + A   +  M E G  PNV TYN +++G+C++            ++
Sbjct: 381 YTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGR----------VQ 430

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KV       G++ D  +++I++  + +  + + +L   N M + GI P + +Y++++
Sbjct: 431 EAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLI 490

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R++++E    E VR G+ P+ +TY      Y    +   A+K + +M + G C
Sbjct: 491 AVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHG-C 549

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP-------------DLD------- 221
             +  +Y  LI      +++D  R +++ +   GL P              +D       
Sbjct: 550 ASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLTPCEVTRVTLAYEYCKIDDGCSAMV 609

Query: 222 ------------SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
                       +   L+  LC ++K   A  +F ++++K     +VT         +S+
Sbjct: 610 VLERLEKKLWVRTVNTLVRKLCSERKVGMAALFFHKLLDKDPNVNRVTIAAFMTACYESN 669



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 127/279 (45%), Gaps = 15/279 (5%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           ++ AE    EM  RGV+PN V+Y V++ G C+  ++  S+R+             M  RG
Sbjct: 183 VEYAENLFDEMCARGVQPNCVSYRVMVVGYCKLGNVLESDRW----------LGGMIERG 232

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
              D  + S+++  +        +L       E G+ P +  ++ +++ LC  G ++ A 
Sbjct: 233 FVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAF 292

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           E+L EMV  G  P+  T+         +     A +L+ ++       PN+ +Y  +I  
Sbjct: 293 EMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISG 352

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
           +    +M+    + + +K  GL P+ ++YT LI G C+   ++ A +    M E+G  P 
Sbjct: 353 YCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPN 412

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKK-----LDEESITF 288
             T+  +  GL +   ++   ++ K      LD + +T+
Sbjct: 413 VCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTY 451



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 1/148 (0%)

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +VK     GR+++A E++ EM   G+ PS +T N   K          A  L+ +M   G
Sbjct: 138 MVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARG 197

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  PN  SY +++  +  L  +         +   G   D  + ++++   CEK     A
Sbjct: 198 V-QPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRA 256

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
             YF    E GL P  + F  +  GL +
Sbjct: 257 LWYFRRFCEMGLRPNLINFTCMIEGLCK 284



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/114 (19%), Positives = 52/114 (45%), Gaps = 1/114 (0%)

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
           E   C  K +        A+++  +M   GL  P+  + N ++ +   +  ++    +++
Sbjct: 133 EVMQCMVKSFAEIGRVKEAIEMVIEMHNQGL-APSTKTLNWVVKIVTEMGLVEYAENLFD 191

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
           ++   G+ P+  SY +++ G C+     E+ ++   MIE+G +    T   + R
Sbjct: 192 EMCARGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVR 245


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 141/277 (50%), Gaps = 11/277 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++T+LI G C+I + ++A   L EM   G  P+VVT N L+ G C +            I
Sbjct: 112 IFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQGK----------I 161

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               K+F  M  +G++PDV S+SI ++ Y +  +   +++  + M  +G+ P   TY+++
Sbjct: 162 DKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTL 221

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +K LC   R  DA+ L  +M   G+ P    Y+     +  + + +  + L+++M+   L
Sbjct: 222 IKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRR-L 280

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++  Y I+I       ++   +E+ + +   GL PD+ +YT L+ GLC +    EA 
Sbjct: 281 VKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEAL 340

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           + F +M E G +P   ++  L +G +Q +   T  +L
Sbjct: 341 RLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQL 377



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 144/290 (49%), Gaps = 19/290 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C ++ +D      G+ ++RG +P+VV +  L++GVCR                A 
Sbjct: 81  LINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTEL----------AA 130

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKL----NFMKEKGICPTVATYSSV 120
            +  EM + G  PDV + + ++    R +  Q  +DK+    + M  KG+ P V +YS  
Sbjct: 131 GLLKEMGLVGCVPDVVTCNSLM----RGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIF 186

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C   +I++A EL  EM   GV P+A TYN   K          A  L+R+M   GL
Sbjct: 187 INGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGL 246

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +Y+ L+  F     +D +  ++ +++   + PDL  YT++I+G+C  +K K+A 
Sbjct: 247 S-PDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAK 305

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
           +    +I +GL P   T+  L  GL +   +    RL +K++E+    GS
Sbjct: 306 EVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGS 355



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 114/225 (50%), Gaps = 11/225 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+  I G+CK+ +ID A     EM  RGV PN VTYN L+  +C+  +L P        R
Sbjct: 183 YSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQ--ALRP--------R 232

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A+ +F +M   G+ PD+ ++S +L  + +       L     M+ + + P +  Y+ ++
Sbjct: 233 DAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIII 292

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C   +++DA+E+L  ++  G+ P   TY               A++L+R+M+EDG C
Sbjct: 293 NGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDG-C 351

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
           +P   SYN+L+   +  N    V ++ +++   G   D  + T L
Sbjct: 352 MPGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRGFYADAVTRTFL 396



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 125/267 (46%), Gaps = 46/267 (17%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           +D A      M++R  +P ++ +N LL+ V R       +++E  +     +F EM  RG
Sbjct: 21  LDDALASFNRMLDRNPQPPIIEFNRLLSSVVRM------KKYETVV----SLFKEMEFRG 70

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           I+ +V + SI+++ +   H             ++G  P V  +++++  +C  G+ E A 
Sbjct: 71  IKYNVCTLSILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAA 130

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
            LL EM   G                                    CVP++ + N L+  
Sbjct: 131 GLLKEMGLVG------------------------------------CVPDVVTCNSLMRG 154

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
           + +  ++D VR+I++ +   GL PD+ SY++ I+G C+ +K  EA + F EM  +G++P 
Sbjct: 155 YCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPN 214

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKKL 281
            VT+ TL + L Q+   R  + L +K+
Sbjct: 215 AVTYNTLIKALCQALRPRDAQVLFRKM 241



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 11/170 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++L+ G+CK   +D       EM  R V+P++V Y +++NG+CR           + ++
Sbjct: 253 YSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCR----------SRKVK 302

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A++V   + V G++PDV +++ ++    R      +L     M+E G  P   +Y+ ++
Sbjct: 303 DAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLL 362

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           +            +L+ EM   G    A T   F K++    D+    +L
Sbjct: 363 QGCLQHNDTSTVVQLIHEMADRGFYADAVTRT-FLKDFLPGNDSPAIKQL 411


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 140/290 (48%), Gaps = 27/290 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERF---- 56
           Y ++I GWCK+ +++ A +   EM+  G VEPN V YN L+ G C + +L  + R+    
Sbjct: 186 YATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEM 245

Query: 57  ---------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                E     A  + +EM  +G+ PD  +++I+++ Y +  + 
Sbjct: 246 VDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKE 305

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + ++     M  KGI  TV TY+S++  L   G +++ + L  + VR G+ P    YN  
Sbjct: 306 KKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNAL 365

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +    D + A ++  +M++  +  P+  +YN L+     L R+D  R +  ++   G
Sbjct: 366 INSHCTGGDMDRAFEIMGEMEKKRI-TPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRG 424

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           + PDL SY  LI G   K   K+A +   EM+ KG  P  +T+  + +GL
Sbjct: 425 IQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGL 474



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 141/307 (45%), Gaps = 24/307 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y ++I G+C   R+      + EM ERG + P+  TY  +++G C+             +
Sbjct: 150 YNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGK----------V 199

Query: 61  RNAEKVFDEMRVRG-IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
            +A KVFDEM   G +EP+   ++ ++  Y      +++L     M ++G+  TVATY+ 
Sbjct: 200 EDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNL 259

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
            V  L   GR  +A  L+ EM   G+ P A TYN     Y        AMK++  M   G
Sbjct: 260 FVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKG 319

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVRE---IWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           +    + +Y  LI    AL+   MV+E   ++ND    G+ PDL  Y  LI+  C     
Sbjct: 320 IRA-TVVTYTSLI---HALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDM 375

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSE 291
             A +   EM +K + P  VT+ TL RGL     L   R L     K+ +  + +++ + 
Sbjct: 376 DRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTL 435

Query: 292 FQNYHFK 298
              Y  K
Sbjct: 436 ISGYSMK 442



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 129/295 (43%), Gaps = 61/295 (20%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVE----------------------------- 31
           MY +LI G+C    +++A R+ GEM++RGV                              
Sbjct: 221 MYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEM 280

Query: 32  ------PNVVTYNVLLNGVCRRA-------------------------SLHPSERFEKTI 60
                 P+  TYN+L+NG C+                           SL  +   +  +
Sbjct: 281 GEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMV 340

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           +  +++F++   RGI PD+  ++ +++ +        + + +  M++K I P   TY+++
Sbjct: 341 QETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTL 400

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++ LC  GR+++A  L+ EM + G+ P   +YN     Y  + D   A+K+  +M   G 
Sbjct: 401 MRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGF 460

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
             P + +YN +I       +     ++  ++ G+G+ PD  +Y  LI GL  + +
Sbjct: 461 N-PTLLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIEGLTTEDE 514



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 111/255 (43%), Gaps = 46/255 (18%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           E++ +   PN VTYN ++ G C R       R +  I    ++  EMR RG         
Sbjct: 137 ELLRQMPSPNAVTYNTVIAGFCARG------RVQAGI----EIMREMRERG--------- 177

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
                                    GI P   TY++V+   C  G++EDA ++  EM+  
Sbjct: 178 -------------------------GIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTE 212

Query: 144 G-VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202
           G V P+A  YN     Y  + +   A++   +M + G+ +  + +YN+ +       R  
Sbjct: 213 GKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSM-TVATYNLFVHTLFMEGRAA 271

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
               +  ++   GL PD  +Y +LI+G C++ K K+A + F  M+ KG+    VT+ +L 
Sbjct: 272 EAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLI 331

Query: 263 RGLIQSDMLRTWRRL 277
             L    M++   RL
Sbjct: 332 HALSMKGMVQETDRL 346


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 148/285 (51%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK+ +   A + L  +  + V+PNVV YN +++ +C+           K + 
Sbjct: 180 YGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKV----------KLVN 229

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++ EM  +GI PDV +++ ++  +    + + + D  N M  + I P V T++ +V
Sbjct: 230 EAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILV 289

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R+++A+ +L  M++ G+ P   TYN     Y   K+ N A  ++  + + G+ 
Sbjct: 290 DGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVN 349

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+HSY+I+I  F  + ++D    ++ ++  + + PD+ +Y  LI GLC+  K   A +
Sbjct: 350 -PNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALK 408

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM ++G+   K+T+ ++   L ++  +     L  K+ +E I
Sbjct: 409 LVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGI 453



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 134/268 (50%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ G+CK  R+  A+  L  M+++G++P+V TYN L++  C            K + 
Sbjct: 285 FNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYC----------LVKEVN 334

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F+ +  RG+ P++ S+SI++H + +  +   +++    M    I P V TY+S++
Sbjct: 335 KAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLI 394

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+I  A +L+ EM   GV     TYN            + A+ L  +MK++G+ 
Sbjct: 395 DGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGI- 453

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  L+       R++  R ++ D+   G   D++ YT +I G C    + E+  
Sbjct: 454 QPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLD 513

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              +M E G +P  VT+E +   L   D
Sbjct: 514 LLSKMEENGCIPNAVTYEIIICSLFDKD 541



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 141/275 (51%), Gaps = 11/275 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++I   CK+  ++ A     EM+ +G+ P+VVTYN L++G C    +          
Sbjct: 214 MYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKM---------- 263

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           ++A  +F++M    I P+V +F+I++  + +  + + + + L  M ++GI P V TY+S+
Sbjct: 264 KDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSL 323

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C    +  A+ +   + + GV P+  +Y+     +   K  + AM L+++M  + +
Sbjct: 324 MDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNI 383

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +P++ +YN LI     L ++    ++ +++   G+  D  +Y  ++  LC+  +  +A 
Sbjct: 384 -IPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAI 442

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
               +M ++G+ P   T+ TL  GL ++  L   R
Sbjct: 443 ALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDAR 477



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 138/284 (48%), Gaps = 13/284 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+C + ++  A     +MI   + PNV T+N+L++G C+          E+ ++
Sbjct: 250 YNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCK----------ERRLK 299

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ V   M  +GI+PDV +++ ++  Y    +   +    N + ++G+ P + +YS ++
Sbjct: 300 EAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMI 359

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   ++++A  L  EM  N + P   TYN            + A+KL  +M + G  
Sbjct: 360 HGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRG-- 417

Query: 182 VP-NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           VP +  +YN ++      +++D    +   +K  G+ PD+ +YT L+ GLC+  + ++A 
Sbjct: 418 VPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDAR 477

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
             F +++ KG +     +  + +G     +      L  K++E 
Sbjct: 478 IVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEEN 521



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 44/295 (14%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  + ++ +  ++   L ++++ G EPNV+T   L+ G+C +  +H + +F        
Sbjct: 113 LINCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFH------- 165

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
              D++   G   +  S+  +++   +  Q   +L  L  +  K + P V  Y++++  +
Sbjct: 166 ---DKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSM 222

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM--------- 175
           C    + +A +L  EMV  G+ P   TYN     +        A  L+ +M         
Sbjct: 223 CKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNV 282

Query: 176 -----KEDGLC--------------------VPNMHSYNILIGMFMALNRMDMVREIWND 210
                  DG C                     P++ +YN L+  +  +  ++  + I+N 
Sbjct: 283 YTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNT 342

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +   G+ P++ SY+++IHG C+ +K  EA   F EM    ++P  VT+ +L  GL
Sbjct: 343 ISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGL 397



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 98/214 (45%), Gaps = 45/214 (21%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I+G+CKI ++D A     EM    + P+VVTYN L++G+C+             I 
Sbjct: 355 YSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGK----------IS 404

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ DEM  RG+  D  +++ +L    + HQ   ++  L  MK++GI P + TY+++V
Sbjct: 405 YALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLV 464

Query: 122 KCLCSCGRIEDAE-----------------------------------ELLGEMVRNGVC 146
             LC  GR+EDA                                    +LL +M  NG  
Sbjct: 465 DGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCI 524

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           P+A TY         + + + A KL R+M   GL
Sbjct: 525 PNAVTYEIIICSLFDKDENDKAEKLLREMITRGL 558



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 109/233 (46%), Gaps = 8/233 (3%)

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
           +M   GI  D+   SI+++ +S+  Q  LS   L  + + G  P V T ++++K LC  G
Sbjct: 97  QMEFNGITSDLVILSILINCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKG 156

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG-LCVPNMHS 187
           +I  A +   ++V  G   +  +Y             + A++L R++  DG L  PN+  
Sbjct: 157 QIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRV--DGKLVQPNVVM 214

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           YN +I     +  ++   ++++++   G+ PD+ +Y  LI G C   K K+A   F +MI
Sbjct: 215 YNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMI 274

Query: 248 EKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGSEFQNY 295
            + + P   TF  L  G  +   L+  +      +K+ +  +  T+ S    Y
Sbjct: 275 FENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRY 327



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 10/75 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT++I G+C     D +   L +M E G  PN VTY +++       SL   +  +K  
Sbjct: 494 IYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIII------CSLFDKDENDK-- 545

Query: 61  RNAEKVFDEMRVRGI 75
             AEK+  EM  RG+
Sbjct: 546 --AEKLLREMITRGL 558


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 149/318 (46%), Gaps = 26/318 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------------- 48
           YT+LIYG   + R+  A     +M+ + ++P+V T+N+L++G+C+               
Sbjct: 242 YTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMI 301

Query: 49  ------------SLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                       SL       K    A  VF+ M  RG+ PDV S+SI+++   +     
Sbjct: 302 KQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVD 361

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +++    M  K + P   TY+S++  L   GRI DA +L+ EM   G      TY+   
Sbjct: 362 EAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLL 421

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A+ L  ++K+ G+  PN+++Y IL+       R+   + ++ D+   G 
Sbjct: 422 DALCKNHQVDKAITLITKIKDQGI-QPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGY 480

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
             D+  Y ++++GLC++  + EA     +M + G +P  VT+ETL R L ++D      +
Sbjct: 481 HLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVK 540

Query: 277 LKKKLDEESITFGSEFQN 294
           L +++  +    GS   +
Sbjct: 541 LLREMIVQGSAVGSNISS 558



 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 133/281 (47%), Gaps = 11/281 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++I   CK   +  A     EMI + + P+VVTY  L+ G      L          
Sbjct: 206 MYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRL---------- 255

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  +F++M ++ I+PDV +F+I++    +  + + + + L  M ++G+   + TY+S+
Sbjct: 256 KEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSL 315

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +       +   A  +   M R GV P  ++Y+         K  + A+ L+++M    +
Sbjct: 316 MDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSM 375

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  +YN LI   +   R+    ++ N++   G   D+ +Y+ L+  LC+  +  +A 
Sbjct: 376 A-PNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAI 434

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
               ++ ++G+ P   T+  L  GL ++  L+  + + + L
Sbjct: 435 TLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDL 475



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 124/300 (41%), Gaps = 44/300 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI  +C +  ++ A   L ++ + G  P+ VT   L+ G+C              +R
Sbjct: 102 FNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGK----------VR 151

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A    D++  +G   D  S+  +++   +  + + +L  L  +    + P V  Y++++
Sbjct: 152 EALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTII 211

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM------ 175
             LC    +  A +L  EM+   + P   TY               A+ L+ QM      
Sbjct: 212 DSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIK 271

Query: 176 --------KEDGLCV--------------------PNMHSYNILIGMFMALNRMDMVREI 207
                     DGLC                      N+ +YN L+  +  + + +    +
Sbjct: 272 PDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFV 331

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           +N +   G+ PD+ SY+++I+GLC+ +   EA   F EM  K + P  VT+ +L  GL++
Sbjct: 332 FNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLK 391



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 45/231 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I G CK   +D A     EM  + + PN VTYN L++G+ +             I 
Sbjct: 347 YSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGR----------IS 396

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  + +EM  RG   DV ++S +L    + HQ   ++  +  +K++GI P + TY+ +V
Sbjct: 397 DAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILV 456

Query: 122 KCLCSCGRIEDAE-----------------------------------ELLGEMVRNGVC 146
             LC  GR++DA+                                    L+ +M  NG  
Sbjct: 457 DGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCI 516

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
           P A TY    +        + A+KL R+M   G  V +  S N ++ ++ A
Sbjct: 517 PDAVTYETLVRALFENDKNDKAVKLLREMIVQGSAVGSNISSNSMLCVYQA 567



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 123/272 (45%), Gaps = 19/272 (6%)

Query: 30  VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89
           V+P +  +N +L+ + +    H +  F K          +M ++ I+PD+ +F+I+++ +
Sbjct: 61  VQP-IFEFNKILSSLVKLNHFHTAISFSK----------QMELKQIQPDLFTFNILINCF 109

Query: 90  SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
                   +   L  + + G  P   T ++++K LC  G++ +A     +++  G     
Sbjct: 110 CHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQ 169

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV-PNMHSYNILIGMFMALNRMDMVREIW 208
            +Y           +   A+++ R++  DGL V PN+  YN +I        +    ++ 
Sbjct: 170 VSYGTLINGLCKTGETRAALQVLRKI--DGLLVQPNVVMYNTIIDSLCKDKLVIHASDLC 227

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           +++    + PD+ +YT LI+G     + KEA   F +M+ K + P   TF  L  GL + 
Sbjct: 228 SEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKE 287

Query: 269 DMLRTWRR-----LKKKLDEESITFGSEFQNY 295
             ++  R      +K+ +D   +T+ S    Y
Sbjct: 288 GEMKKARNVLAVMIKQGVDSNIVTYNSLMDGY 319


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 132/265 (49%), Gaps = 11/265 (4%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M++RG +P+VVTY VLL  VC+ +              A  V DEMR +G  P++ ++++
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFG----------EAMNVLDEMRAKGCTPNIVTYNV 227

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           +++   R  +   + + LN +   G  P + +Y++V+K LC+  R +D + L  EMV   
Sbjct: 228 IINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKK 287

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
             P+  T++   + +        A+++ +QM + G C PN    NI+I       R+D  
Sbjct: 288 CVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHG-CTPNTTLCNIVINAICKQGRVDDA 346

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            +  N++   G  PD  SYT ++ GLC   +W+ A +   EM+ K   P +VTF T    
Sbjct: 347 YDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICI 406

Query: 265 LIQSDMLRTWRRLKKKLDEESITFG 289
           L Q  ++    +L + + E   + G
Sbjct: 407 LCQKGLIEQAIKLIELMPEYGCSVG 431



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 132/286 (46%), Gaps = 14/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+++ G C   R D  +    EM+++   PN VT+++L+   CR             + 
Sbjct: 260 YTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGG----------MVE 309

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V  +M   G  P+ T  +IV++   +  +   + D LN M   G  P   +Y++V+
Sbjct: 310 RAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVL 369

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  GR E A+ELL EMVR    P+  T+N F      +     A+KL   M E G C
Sbjct: 370 RGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYG-C 428

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              + +YN L+  F    R+D   E++N++      P+  +YT L+ GLC  ++   A +
Sbjct: 429 SVGIVTYNALVHGFCVQGRVDSALELFNNLPCE---PNTITYTTLLTGLCHAERLDAAAE 485

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              EMI+K      VTF  L     Q   +     L  ++ E   T
Sbjct: 486 LLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCT 531



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/306 (20%), Positives = 142/306 (46%), Gaps = 31/306 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           YT+++ G C+  R + A+  L EM+ +   PN VT+N  +  +C++  +  + +      
Sbjct: 365 YTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMP 424

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +  + +A ++F+ +     EP+  +++ +L     A +  
Sbjct: 425 EYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPC---EPNTITYTTLLTGLCHAERLD 481

Query: 97  LSLDKLNFMKEKGICPTVA-TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
            + + L  M +K  CP  A T++ +V   C  G +E+A EL+ +M+ +G  P+  T+N  
Sbjct: 482 AAAELLAEMIQKD-CPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTL 540

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                   ++  A++L   +   G+ +  + +Y+ ++ +    +R +   ++ + V+  G
Sbjct: 541 LDGITKDCNSEEALELLHGLVSKGVSLDTI-TYSSVVDVLSREDRTEEAIQMLHAVQDMG 599

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           + P +  Y  ++  LC++ +  +A  +F  M+  G +P + T+  L  GL    +L+  R
Sbjct: 600 MRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAR 659

Query: 276 RLKKKL 281
            +  +L
Sbjct: 660 YVLSEL 665



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 109/255 (42%), Gaps = 46/255 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G C   R+D A   L EMI++    N VT+NVL++  C++            + 
Sbjct: 467 YTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKG----------FVE 516

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ ++M   G  P++ +F+ +L   ++    + +L+ L+ +  KG+     TYSSVV
Sbjct: 517 EAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVV 576

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L    R E+A ++L  +   G+ P    YN        R + + A+  +  M  +G C
Sbjct: 577 DVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNG-C 635

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN  +Y I                                   LI GL  +   KEA  
Sbjct: 636 MPNESTYII-----------------------------------LIEGLAHEGLLKEARY 660

Query: 242 YFVEMIEKGLLPQKV 256
              E+  KG+L + +
Sbjct: 661 VLSELYAKGVLSKSL 675


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 149/294 (50%), Gaps = 16/294 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLIYG  K+ R   A   L EM   G  P+V+TY+ L+ G+ +           +T++
Sbjct: 152 YNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDG---------ETVK 202

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F EM+ RG +PD  +F+ ++    +A +   +L+ L+ MKE+G+ P V TY++++
Sbjct: 203 -AFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALI 261

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G + +A  LL EM RNG  P   TY+C           + A ++ ++M+++G C
Sbjct: 262 AGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEG-C 320

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN LI        ++    +++ +K  G  PD+ +Y+ LI  L +  + + AC 
Sbjct: 321 PPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACV 380

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGS 290
            F EM   G+ P   T+ ++   L ++  +    RL      K L  + IT+ +
Sbjct: 381 LFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNA 434



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 141/289 (48%), Gaps = 11/289 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+L+    K  R+D A   L EM ERGV+P VVTYN L+ G  +   L           
Sbjct: 222 FTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLV---------- 271

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + DEM+  G +PDV ++S ++    +A Q   +   L  M+++G  P   TY++++
Sbjct: 272 EAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLI 331

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G + DA  L   M   G  P   TY+              A  L+ +M+  G+ 
Sbjct: 332 NGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGI- 390

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  +I +     ++D    ++++++G GL PD+ +Y   ++ L    ++KEA +
Sbjct: 391 QPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARK 450

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
            F +M E GLLP   T++ L  GL ++  +     L K+L E+   F S
Sbjct: 451 IFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDS 499



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 128/258 (49%), Gaps = 11/258 (4%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
           PNVVTYN LLN + +                A+ +F+E++     PDV S+S +++   R
Sbjct: 7   PNVVTYNSLLNALAKAGQCE----------EAQLLFEELKAAKWTPDVVSYSCLINSLGR 56

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
           A + + +L+ +  M+ KG  P + TY+++V CL   G+ ++A  LL EM  NG  P   T
Sbjct: 57  AGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRT 116

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           YNC           + A  L+ +M+E G CVP+  +YN LI     + R     E+  ++
Sbjct: 117 YNCLISTLGKAGRLSEAFTLFAEMRERG-CVPDTFTYNSLIYGLGKVGRSQKAMELLEEM 175

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           +  G  PD+ +Y+ LI GL +  +  +A + F EM  +G  P  +TF  L   L ++  +
Sbjct: 176 ERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRV 235

Query: 272 RTWRRLKKKLDEESITFG 289
                L  ++ E  +  G
Sbjct: 236 DDALELLDEMKERGVKPG 253



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 142/320 (44%), Gaps = 46/320 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G  K +++D A + L +M + G  P+ +TYN L+NG+ +   L+          
Sbjct: 292 YSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLN---------- 341

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++FD M+ +G  PDV ++S ++    +A + + +      M+  GI P + TY S++
Sbjct: 342 DAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSII 401

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G+++DA+ L  EM   G+ P   TYN F            A K++  MKE GL 
Sbjct: 402 TVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGL- 460

Query: 182 VPNMHSYNILI-------------GMFMAL----------------------NRMDMVRE 206
           +P++ +Y+ L+             G+   L                        +D   E
Sbjct: 461 LPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHE 520

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +       GL P   SY  LI  L +  +  EA     ++ E+G  P  V++ +L   L 
Sbjct: 521 LLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALG 580

Query: 267 QSDMLRTWRRLKKKLDEESI 286
           Q+  + T   L +++ +  +
Sbjct: 581 QTGQIDTAFELLEEMSKRGL 600



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 136/284 (47%), Gaps = 11/284 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI    +  + + A   + EM  +G +PN+ TYN L++       L  + +F++ +R
Sbjct: 47  YSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVD------CLGKAGQFDEALR 100

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +  EMR  G  PDV +++ ++    +A +   +      M+E+G  P   TY+S++
Sbjct: 101 ----LLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLI 156

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR + A ELL EM R+G  P   TY+          +   A KL+++MK  G  
Sbjct: 157 YGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGR- 215

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  ++  L+       R+D   E+ +++K  G+ P + +Y  LI G  +     EA  
Sbjct: 216 KPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYN 275

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
              EM   G  P  VT+  L  GLI++  L    ++ KK+++E 
Sbjct: 276 LLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEG 319



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 153/347 (44%), Gaps = 73/347 (21%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRAS------------ 49
           Y SL+    K  + + A+    E+      P+VV+Y+ L+N + R               
Sbjct: 12  YNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQ 71

Query: 50  -----------------LHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92
                            L  + +F++ +R    +  EMR  G  PDV +++ ++    +A
Sbjct: 72  AKGCKPNLWTYNTLVDCLGKAGQFDEALR----LLAEMRDNGCVPDVRTYNCLISTLGKA 127

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
            +   +      M+E+G  P   TY+S++  L   GR + A ELL EM R+G  P   TY
Sbjct: 128 GRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTY 187

Query: 153 NC----------------FFKEY--RGRK----------DANG-------AMKLYRQMKE 177
           +                  F+E   RGRK          DA G       A++L  +MKE
Sbjct: 188 SSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKE 247

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G+  P + +YN LI  F  +  +     + +++K +G  PD+ +Y+ LI GL +  +  
Sbjct: 248 RGV-KPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLD 306

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML----RTWRRLKKK 280
           EACQ   +M ++G  P  +T+ TL  GL ++ +L    R + R+K K
Sbjct: 307 EACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSK 353



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 107/235 (45%), Gaps = 14/235 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I    K  ++D A+R   EM  +G+ P+V+TYN  LN      SL    RF    +
Sbjct: 397 YCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLN------SLGRGGRF----K 446

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F++M+  G+ PDV ++  +L   S+  +   +   L  + E+G       +   +
Sbjct: 447 EARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECL 506

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + L S G +++A ELL      G+ P A +YN            + A      +KE G  
Sbjct: 507 EILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQG-G 565

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
            P++ SY+ LI       ++D   E+  ++   GL     SY+ L+  L   Q W
Sbjct: 566 KPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRKL---QDW 617



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 42/83 (50%)

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G   PN+ +YN L+       + +  + ++ ++K +   PD+ SY+ LI+ L    KW+ 
Sbjct: 3   GFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEA 62

Query: 239 ACQYFVEMIEKGLLPQKVTFETL 261
           A +   EM  KG  P   T+ TL
Sbjct: 63  ALEVVAEMQAKGCKPNLWTYNTL 85


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 141/274 (51%), Gaps = 14/274 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G C+   +D+A+    +MI+ G+ P+VVT+ +L+ G C+  +L           
Sbjct: 385 YNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNL----------P 434

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++FDEM  RG++PD  +++  +    +   P  +      MK +G  P + TY+ ++
Sbjct: 435 MAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLI 494

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G  +DA EL+ +M   G+ P   TY      +        A +++  M + G+ 
Sbjct: 495 NGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIH 554

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y +LI  +    R+D  ++ +++++  G+ P++ +Y  LI+GLC++     A  
Sbjct: 555 -PSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYN 613

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
            F EM  KG+ P K T+  L     ++  L+ W+
Sbjct: 614 LFAEMESKGVSPNKYTYTILIN---ENSNLQYWQ 644



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 144/299 (48%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CK    + A     EM+ RG  P VVTYN ++  +CR   +  + R+     
Sbjct: 280 YNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRY----- 334

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 D M    + PD+ S++ +++ YSR      +L   + ++ K + P+V TY++++
Sbjct: 335 -----LDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLI 389

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G ++ A+ +  +M+++G+CP   T+    + +    +   A +L+ +M   GL 
Sbjct: 390 DGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLK 449

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y   I   + L        +  ++K  G  PDL +Y +LI+GLC+   + +A +
Sbjct: 450 -PDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANE 508

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGSEFQNY 295
              +M  +G++P  VT+ ++    + S +LR         LKK +    +T+     +Y
Sbjct: 509 LVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSY 567



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 142/321 (44%), Gaps = 46/321 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++Y  C++ R+  A R+L  M+   + P++V+YN L+ G  R  +            
Sbjct: 315 YNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNF----------A 364

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F E+R + + P V +++ ++    R     ++    + M + G+CP V T++ +V
Sbjct: 365 EALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILV 424

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G +  A+EL  EM+  G+ P    Y           + + A  +  +MK +G  
Sbjct: 425 RGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFP 484

Query: 182 VPNMHSYNILIGMFMALNRMD-----------------------------------MVRE 206
            P++ +YN+LI     L   D                                      E
Sbjct: 485 -PDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEE 543

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +++D+   G+ P + +YT+LIH    + +   A +YF EM +KG+ P  +T+  L  GL 
Sbjct: 544 VFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLC 603

Query: 267 QSDMLRTWRRLKKKLDEESIT 287
           + +M+     L  +++ + ++
Sbjct: 604 KENMMDVAYNLFAEMESKGVS 624



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 130/259 (50%), Gaps = 11/259 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +++   CK   +  A   L  M   G +PN V+YNVL+NG+  +        F++   
Sbjct: 210 FNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKG------EFDR--- 260

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++ ++M + G++    +++ ++  + +    + + D    M  +G  PTV TY++++
Sbjct: 261 -AKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIM 319

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+ DA   L  MV   + P   +YN     Y    +   A+ L+ +++   L 
Sbjct: 320 YSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNL- 378

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++ +YN LI        +D+ + + +D+   GL PD+ ++T+L+ G C+      A +
Sbjct: 379 VPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKE 438

Query: 242 YFVEMIEKGLLPQKVTFET 260
            F EM+ +GL P  + + T
Sbjct: 439 LFDEMLSRGLKPDCIAYTT 457



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 25/199 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSE------R 55
           YT+ I G  K+     A     EM   G  P+++TYNVL+NG+C+  +   +       R
Sbjct: 455 YTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMR 514

Query: 56  FEKTI-------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            E  +                   R AE+VF +M  +GI P V ++++++H Y+   +  
Sbjct: 515 LEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLD 574

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    + M++KG+ P V TY++++  LC    ++ A  L  EM   GV P+  TY    
Sbjct: 575 FAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILI 634

Query: 157 KEYRGRKDANGAMKLYRQM 175
            E    +    A+KLY+ M
Sbjct: 635 NENSNLQYWQDALKLYKDM 653



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 11/241 (4%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           +M+  G+ P+V   N +L  +  ++           +   E+V+  M    I P + +F+
Sbjct: 162 KMVNNGLLPDVRNCNRVLKLLKDKS----------MVNEVEEVYSVMIKCQIRPTIVTFN 211

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            ++    +  +   +++ L+ M+  G  P   +Y+ +V  L   G  + A+EL+ +M   
Sbjct: 212 TMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSML 271

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+  SA TYN   + +  ++    A  L R+M   G  +P + +YN ++     L R+  
Sbjct: 272 GLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRG-ALPTVVTYNTIMYSLCRLGRVSD 330

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            R   + +    L PDL SY  LI+G      + EA   F E+  K L+P  VT+ TL  
Sbjct: 331 ARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLID 390

Query: 264 G 264
           G
Sbjct: 391 G 391



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 95/199 (47%), Gaps = 1/199 (0%)

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           VF +M   G+ PDV + + VL +           +  + M +  I PT+ T+++++   C
Sbjct: 159 VFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRC 218

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
             G +  A E+L  M   G  P+  +YN       G+ + + A +L  QM   GL V + 
Sbjct: 219 KEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKV-SA 277

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
           H+YN LI  F      +   ++  ++ G G  P + +Y  +++ LC   +  +A +Y   
Sbjct: 278 HTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDV 337

Query: 246 MIEKGLLPQKVTFETLYRG 264
           M+ + L+P  V++ TL  G
Sbjct: 338 MVNEDLMPDLVSYNTLIYG 356



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 1/204 (0%)

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           R  E  V    +++ V+++    +  L     M   G+ P V   + V+K L     + +
Sbjct: 131 RNSEVSVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNE 190

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
            EE+   M++  + P+  T+N          +   A+++   M+  G C PN  SYN+L+
Sbjct: 191 VEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFG-CDPNDVSYNVLV 249

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                    D  +E+   +   GL     +Y  LI G C+K+ ++EA     EM+ +G L
Sbjct: 250 NGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGAL 309

Query: 253 PQKVTFETLYRGLIQSDMLRTWRR 276
           P  VT+ T+   L +   +   RR
Sbjct: 310 PTVVTYNTIMYSLCRLGRVSDARR 333



 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 1/143 (0%)

Query: 139 EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL 198
           +MV NG+ P     N   K  + +   N   ++Y  M +  +  P + ++N ++      
Sbjct: 162 KMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIR-PTIVTFNTMMDSRCKE 220

Query: 199 NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
             +    E+ + ++  G  P+  SY +L++GL  K ++  A +   +M   GL     T+
Sbjct: 221 GEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTY 280

Query: 259 ETLYRGLIQSDMLRTWRRLKKKL 281
             L RG  + +M      L++++
Sbjct: 281 NPLIRGFCKKEMFEEANDLRREM 303


>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
 gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
 gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
          Length = 632

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 141/258 (54%), Gaps = 12/258 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+  WC    +  A R   EM+E G++P+VV +N ++ G+ R       +R  + + 
Sbjct: 327 YTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLR------GQRRPEAV- 379

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K+F+ M+ +G  P+V ++++++  + +  +  +++     M++ G  P VATY+ ++
Sbjct: 380 ---KMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLL 436

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               +  R++    LL EM + G  P   TYN   K    R   + A ++Y++M + GL 
Sbjct: 437 VGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGL- 495

Query: 182 VPNMHSYNILIGMFMALNRMDMVR-EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            P +H+YN+++  +    R  M+   +W ++   G+ PD++SYT+ I+G     + +EAC
Sbjct: 496 EPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEAC 555

Query: 241 QYFVEMIEKGLLPQKVTF 258
           +Y  EMI+KG+   ++ +
Sbjct: 556 KYIEEMIQKGMKTPQIDY 573



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 114/242 (47%), Gaps = 4/242 (1%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           I+NA  VF+ MR  G +  V SF+ +L   ++    + +    + M+++   P + +Y++
Sbjct: 271 IKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRMRDR-YAPDLRSYTA 329

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMKED 178
           ++   C+   + +A  +  EM+ NG+ P    +N   +   RG++    A+K++  MK  
Sbjct: 330 LMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPE-AVKMFELMKAK 388

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G   PN+ +Y +LI       +MDM    + +++  G  PD+ +YT L+ G    ++   
Sbjct: 389 GP-APNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDR 447

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
                 EM +KG  P   T+  L + L   +M     R+ KK+ ++ +       N   K
Sbjct: 448 VTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMK 507

Query: 299 PY 300
            Y
Sbjct: 508 SY 509



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 11/159 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ G+    R+D     L EM ++G  P+  TYN L+  +  R              
Sbjct: 432 YTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNR----------NMPD 481

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP-QLSLDKLNFMKEKGICPTVATYSSV 120
           +A +++ +M  +G+EP + ++++++  Y    +   +       M  KGICP V +Y+  
Sbjct: 482 DAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVF 541

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           +      GR E+A + + EM++ G+      YN F  ++
Sbjct: 542 INGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAADF 580


>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
           [Vitis vinifera]
          Length = 644

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 145/293 (49%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+++ G+CK+  I  A ++LG+M++RG+ P+V TY +L++  C+  ++           
Sbjct: 361 YTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEM--------- 411

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE +F  M   G+ PDV S++ +++ Y +    Q + + L+ M+  G+ P + TY+ ++
Sbjct: 412 -AEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILI 470

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G + +A+++L E+ R G  P   T+      +  + +   A  L+  M E  L 
Sbjct: 471 HGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHL- 529

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ + + L+  +     M     +++ +  +GL  D+  Y  LIHG C      +AC 
Sbjct: 530 EPDVVTCSALLNGYCRTRCMAEANVLFHKMLDAGLKADVILYNSLIHGFCSLGNIDDACH 589

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
               MIE G++P  +T   L  G  +  +     R   KL +  + +G + ++
Sbjct: 590 LVSMMIEHGIMPNNITHHALVLGYEKKCVENPVERAAFKLQQLLLKYGIQAED 642



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 123/261 (47%), Gaps = 22/261 (8%)

Query: 8   GWCKINR----IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           G+CK+ +    +D+ E F        + PN+  +N  ++ +C   ++            A
Sbjct: 300 GYCKVGKSEEAMDVLEVF-------NLSPNIFVFNSFISKLCTDGNM----------LKA 342

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            KVF +M   G+ PD  S++ ++  Y +      +L  L  M ++GI P+VATY+ ++  
Sbjct: 343 AKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLIDS 402

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C  G +E AE L   M+  G+ P   +YN     Y  +     A +L   M+  G+  P
Sbjct: 403 CCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVS-P 461

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++ +YNILI   +    ++  ++I +++   G  PD+ ++T +I G   K  ++EA   F
Sbjct: 462 DLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNIIGGFSNKGNFEEAFLLF 521

Query: 244 VEMIEKGLLPQKVTFETLYRG 264
             M E  L P  VT   L  G
Sbjct: 522 FYMSEHHLEPDVVTCSALLNG 542



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 128/283 (45%), Gaps = 23/283 (8%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER--FEKT--- 59
            I G+C    ID   + L EM   G++P+VV Y ++++ +C+ + L  +    F+ T   
Sbjct: 227 FISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMSLLKEATSILFKMTQMG 286

Query: 60  -----------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKL 102
                            +  +E+  D + V  + P++  F+  +           +    
Sbjct: 287 VFLDSVSVSSVVDGYCKVGKSEEAMDVLEVFNLSPNIFVFNSFISKLCTDGNMLKAAKVF 346

Query: 103 NFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR 162
             M E G+ P   +Y++++   C    I +A + LG+M++ G+ PS  TY          
Sbjct: 347 QDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKP 406

Query: 163 KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS 222
            +   A  L+++M  +GL VP++ SYN L+  +     +    E+ + ++ +G+ PDL +
Sbjct: 407 GNMEMAEYLFQRMITEGL-VPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVT 465

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           Y +LIHGL ++    EA     E+  +G  P  VTF  +  G 
Sbjct: 466 YNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNIIGGF 508



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER 55
           +Y SLI+G+C +  ID A   +  MIE G+ PN +T++ L+ G  ++   +P ER
Sbjct: 570 LYNSLIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHALVLGYEKKCVENPVER 624



 Score = 43.9 bits (102), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 1/138 (0%)

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
             Y  +V C       + A +L+ +M    + P     N   K     +  N A    ++
Sbjct: 152 TVYGMLVNCYVKENMTQVALKLICKMRHLNIFPLIGVCNSLLKALLESEQLNLAWDFLKE 211

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           MK  GL + N    ++ I  + +   +D   ++  ++K  G+ PD+ +YT++I  LC+  
Sbjct: 212 MKSQGLGL-NASIISLFISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMS 270

Query: 235 KWKEACQYFVEMIEKGLL 252
             KEA     +M + G+ 
Sbjct: 271 LLKEATSILFKMTQMGVF 288


>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
 gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
          Length = 621

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 137/256 (53%), Gaps = 16/256 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV--CRRASLHPSERFEKT 59
           YT L+ GWC++  +  A +   +MI+   +P++V +N +L G+  C++ S          
Sbjct: 315 YTVLLNGWCRVRNLMEAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRS---------- 364

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
             +A K+F+ M+ +G  PDV S++I++  + +  + + ++     M+  G  P  A Y+ 
Sbjct: 365 --DAIKLFEVMKAKGPSPDVKSYTILVRDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTC 422

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++    +  R++    LL EM  NG  P  +TYN   K    ++  + A+++Y++M E+G
Sbjct: 423 LITGFGNQKRMDTVYGLLKEMKANGCPPDGKTYNALIKLMTNKRMPDDAVRIYKKMIENG 482

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  P  H+Y++++  +      +M    W+++K  G  PD +SYT+ I GL    +  EA
Sbjct: 483 I-KPTTHTYSMMMKSYFQTRNYEMGVAAWDEMKLKGCCPDDNSYTVFIGGLISLGRCAEA 541

Query: 240 CQYFVEMIEKGL-LPQ 254
            +Y  EMIEKG+  PQ
Sbjct: 542 GKYLEEMIEKGMKAPQ 557



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 110/235 (46%), Gaps = 12/235 (5%)

Query: 34  VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93
           V T N LL+ + R           K  + A  +F+++  R   P++ +++++L+ + R  
Sbjct: 278 VETINCLLDSLGR----------AKLGKEALTIFEKLHGR-FTPNLQTYTVLLNGWCRVR 326

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
               +    N M ++   P +  ++++++ L  C +  DA +L   M   G  P  ++Y 
Sbjct: 327 NLMEAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPSPDVKSYT 386

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
              +++  +     A++ + +M+  G C P+   Y  LI  F    RMD V  +  ++K 
Sbjct: 387 ILVRDFCKQAKMKEAVQYFEEMQGAG-CRPDAAIYTCLITGFGNQKRMDTVYGLLKEMKA 445

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           +G  PD  +Y  LI  +  K+   +A + + +MIE G+ P   T+  + +   Q+
Sbjct: 446 NGCPPDGKTYNALIKLMTNKRMPDDAVRIYKKMIENGIKPTTHTYSMMMKSYFQT 500



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 12/166 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G+    R+D     L EM   G  P+  TYN L+        L  ++R     
Sbjct: 419 IYTCLITGFGNQKRMDTVYGLLKEMKANGCPPDGKTYNALIK-------LMTNKRMPD-- 469

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A +++ +M   GI+P   ++S+++  Y +    ++ +   + MK KG CP   +Y+  
Sbjct: 470 -DAVRIYKKMIENGIKPTTHTYSMMMKSYFQTRNYEMGVAAWDEMKLKGCCPDDNSYTVF 528

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR--GRKD 164
           +  L S GR  +A + L EM+  G+      YN F  ++   GR D
Sbjct: 529 IGGLISLGRCAEAGKYLEEMIEKGMKAPQLDYNKFAADFSRAGRPD 574



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 10/189 (5%)

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC-SCGRIEDAEELLG- 138
           +F++    ++ A + + ++  L  MK+      V T    + CL  S GR +  +E L  
Sbjct: 245 TFTVCFKAFAAAKERKKAVGVLELMKKYKYKVGVET----INCLLDSLGRAKLGKEALTI 300

Query: 139 -EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFM 196
            E +     P+ +TY      +   ++   A K++ QM ++    P++ ++N ++ G+  
Sbjct: 301 FEKLHGRFTPNLQTYTVLLNGWCRVRNLMEAGKIWNQMIDEDF-KPDIVAHNTMLEGLLR 359

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
              R D ++ ++  +K  G  PD+ SYT+L+   C++ K KEA QYF EM   G  P   
Sbjct: 360 CKKRSDAIK-LFEVMKAKGPSPDVKSYTILVRDFCKQAKMKEAVQYFEEMQGAGCRPDAA 418

Query: 257 TFETLYRGL 265
            +  L  G 
Sbjct: 419 IYTCLITGF 427



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 109/263 (41%), Gaps = 11/263 (4%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           ++E   E  ++T       VC +A     ER     + A  V + M+    +  V + + 
Sbjct: 231 LLEEMAEKELLTMETFT--VCFKAFAAAKER-----KKAVGVLELMKKYKYKVGVETINC 283

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKG-ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
           +L    RA   + +L    F K  G   P + TY+ ++   C    + +A ++  +M+  
Sbjct: 284 LLDSLGRAKLGKEALTI--FEKLHGRFTPNLQTYTVLLNGWCRVRNLMEAGKIWNQMIDE 341

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
              P    +N   +     K  + A+KL+  MK  G   P++ SY IL+  F    +M  
Sbjct: 342 DFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPS-PDVKSYTILVRDFCKQAKMKE 400

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             + + +++G+G  PD   YT LI G   +++         EM   G  P   T+  L +
Sbjct: 401 AVQYFEEMQGAGCRPDAAIYTCLITGFGNQKRMDTVYGLLKEMKANGCPPDGKTYNALIK 460

Query: 264 GLIQSDMLRTWRRLKKKLDEESI 286
            +    M     R+ KK+ E  I
Sbjct: 461 LMTNKRMPDDAVRIYKKMIENGI 483


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 151/312 (48%), Gaps = 27/312 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKTI 60
           +T +I G CK   I  A   L EM+ +G +PNV T+  L++G+C++     + R F K +
Sbjct: 278 FTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLV 337

Query: 61  RN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           R+                         AE +   M+ +G+ P+  +++ ++  + +A   
Sbjct: 338 RSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNF 397

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + + D +N M  +G  P + TY+++V  LC  GR+++A ++L +  +NG+ P   TYN  
Sbjct: 398 ERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNIL 457

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
             E+  +++   A+ L+ +M + G+  P++HSY  LI +F   NRM      + +    G
Sbjct: 458 MSEHCKQENIRQALALFNKMLKIGI-QPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIG 516

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           + P   +YT +I G C +     A ++F  + + G  P  +T+  +  GL +       R
Sbjct: 517 IIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKRDEAR 576

Query: 276 RLKKKLDEESIT 287
            L   + E+ + 
Sbjct: 577 SLYDSMIEKGLV 588



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 151/365 (41%), Gaps = 87/365 (23%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIER--------------------------------- 28
           Y  ++  +CKI  I  A+++L  M+ER                                 
Sbjct: 208 YRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRALWYFRRLV 267

Query: 29  --GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
             G+EPN++ +  ++ G+C+R S          I+ A ++ +EM  +G +P+V + + ++
Sbjct: 268 DMGLEPNLINFTCMIEGLCKRGS----------IKQAFEMLEEMVGKGWKPNVYTHTSLI 317

Query: 87  H------------------VYSRAHQPQLSL-----------DKLN-------FMKEKGI 110
                              V S  H+P +             DKLN        MKE+G+
Sbjct: 318 DGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGL 377

Query: 111 CPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMK 170
            P   TY++++   C  G  E A +L+  M   G  P+  TYN        R     A K
Sbjct: 378 VPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYK 437

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           +     ++GL  P+  +YNIL+        +     ++N +   G+ PD+ SYT LI   
Sbjct: 438 MLEDGFQNGL-KPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVF 496

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE-----ES 285
           C + + KE+  +F E +  G++P   T+ ++  G  +   L    +   +L +     +S
Sbjct: 497 CRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDS 556

Query: 286 ITFGS 290
           IT+G+
Sbjct: 557 ITYGA 561



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 121/283 (42%), Gaps = 47/283 (16%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           ++ AE    EM  RGV+P+ ++Y V++   C+  +          I  A+K    M  RG
Sbjct: 186 VEYAELLFEEMCVRGVQPDSISYRVMVVMYCKIGN----------ILEADKWLSVMLERG 235

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
              D  +F++++  +S       +L     + + G+ P +  ++ +++ LC  G I+ A 
Sbjct: 236 FVVDNATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAF 295

Query: 135 ELLGEMVR--------------NGVC----------------------PSAETYNCFFKE 158
           E+L EMV               +G+C                      P+  TY      
Sbjct: 296 EMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISG 355

Query: 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218
           Y      N A  L  +MKE GL VPN ++Y  LI         +   ++ N +   G  P
Sbjct: 356 YCREDKLNRAEMLLSRMKEQGL-VPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSP 414

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +L +Y  +++GLC++ + +EA +   +  + GL P K T+  L
Sbjct: 415 NLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNIL 457



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 85/218 (38%), Gaps = 60/218 (27%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           YT+LI G CK    + A   +  M   G  PN+ TYN ++NG+C+R  +  + +      
Sbjct: 384 YTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGF 443

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               ++ IR A  +F++M   GI+PD+ S++ ++ V+ R ++ +
Sbjct: 444 QNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMK 503

Query: 97  -----------------------------------LSLDKLNFMKEKGICPTVATYSSVV 121
                                              L++   + + + G  P   TY +++
Sbjct: 504 ESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAII 563

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
             LC   + ++A  L   M+  G+ P   T      EY
Sbjct: 564 SGLCKQSKRDEARSLYDSMIEKGLVPCEVTRITLAYEY 601



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 97/223 (43%), Gaps = 17/223 (7%)

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           RN+EK  + MR             ++  +S   + + +++ +  M  +G+ P   T + +
Sbjct: 129 RNSEKACEVMRC------------MVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWI 176

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +K     G +E AE L  EM   GV P + +Y      Y    +   A K    M E G 
Sbjct: 177 IKVTSEMGLVEYAELLFEEMCVRGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGF 236

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIW--NDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
            V N  ++ ++I  F    +    R +W    +   GL P+L ++T +I GLC++   K+
Sbjct: 237 VVDNA-TFTLIISRFSG--KGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQ 293

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           A +   EM+ KG  P   T  +L  GL +        RL  KL
Sbjct: 294 AFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKL 336


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 127/268 (47%), Gaps = 10/268 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L++G C   +++ A     EM      P+VVTYN LL+ VC+           + +
Sbjct: 187 VYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCK----------ARRV 236

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               K+F+ MR  G  P+V +FS ++H   R  + + +L+    M E G  P   TY+++
Sbjct: 237 EEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTL 296

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   ++  A EL  +M +  + P A  YN     Y  R   + A KLYR+M     
Sbjct: 297 ISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAG 356

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P + ++N LI  F  L ++    E+  ++   GL  D  +Y +LI GL    K  EA 
Sbjct: 357 LQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEAL 416

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           + + +M EK  L   V+  +   GL ++
Sbjct: 417 EVYKQMREKKFLLDPVSCVSFVGGLCKT 444



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 140/285 (49%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  ++ G+ + N ++ A      M+E G +P+ V+Y++L++G+ +   L  S        
Sbjct: 48  FNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESL------- 100

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K+  EM +RG  P + ++S ++   ++A +   +    + M   G  P    +  ++
Sbjct: 101 ---KILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELI 157

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+++DA E   +M ++G  P+   YN              A  L+ +MK    C
Sbjct: 158 LGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHS-C 216

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN L+       R++   +++  ++ +G  P++ +++ LIHGLC   + ++A +
Sbjct: 217 SPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALE 276

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F  M+E G  P K T+ TL  GL +++ +   R L +K+ +  I
Sbjct: 277 VFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACI 321



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 131/270 (48%), Gaps = 11/270 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I    K  + + + + L EM+  G  P+V  +N ++ G  R      S   EK   
Sbjct: 13  YSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFAR------SNNMEK--- 63

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V+  M   G +PD  S+ I++H  ++  +   SL  L+ M  +G  P++  YSS+V
Sbjct: 64  -AREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLV 122

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + L    R++ A  L  EM+R G  P    +               A + ++QM + G C
Sbjct: 123 RALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHG-C 181

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+  YN+L+    +  +++    ++ ++K     PD+ +Y  L+  +C+ ++ +E C+
Sbjct: 182 QPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCK 241

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
            F  M   G +P  +TF TL  GL ++  L
Sbjct: 242 LFEAMRAAGYVPNVITFSTLIHGLCRTGEL 271



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 131/281 (46%), Gaps = 11/281 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI+G  KI ++D + + L EM+ RG  P++  Y+ L+  + +           + + 
Sbjct: 83  YHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAK----------ARRVD 132

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +FDEM   G  PD   F  ++    +A + + + ++   M + G  P V  Y+ ++
Sbjct: 133 HASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLL 192

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LCS G++E A  L  EM  +   P   TYN         +      KL+  M+  G  
Sbjct: 193 HGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGY- 251

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN+ +++ LI        ++   E++  +  +G  P+  +YT LI GLC  +K  +A +
Sbjct: 252 VPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARE 311

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
            F +M +  + P  V + +L  G  +   +    +L +++ 
Sbjct: 312 LFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMS 352



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 11/152 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIE-RGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y SLI G+CK   +D AE+   EM    G++P +VT+N L++G C+   L          
Sbjct: 328 YNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLG--------- 378

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++  EM  +G+  D  ++ I++   SRA +   +L+    M+EK       +  S 
Sbjct: 379 -RANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSF 437

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
           V  LC  G I+ A  +     ++G  P+ ET+
Sbjct: 438 VGGLCKTGNIDQAYAVFEATRKSGAVPNPETF 469



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 36/164 (21%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M++K I   V TYSS++K L    + E++ ++L EM+  G                    
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAG-------------------- 40

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
                           C P++ ++N ++  F   N M+  RE++  +  SG  PD  SY 
Sbjct: 41  ----------------CNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYH 84

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           +LIHGL +  K  E+ +   EM+ +G  P    + +L R L ++
Sbjct: 85  ILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKA 128


>gi|255569207|ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535151|gb|EEF36831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 687

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 130/264 (49%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I G+CK+  I+ A ++LGEM++ G+ P+V TY +L+N  C+   +           
Sbjct: 394 YTIIIGGYCKVGDINKAFQYLGEMLKFGITPSVTTYTLLINACCKSGDM----------A 443

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE +   M + G+ PDV +F+ ++  + +    Q + + L+ M+  G+ P   TY++++
Sbjct: 444 MAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKGYLQKAFELLDIMRSAGMSPDTVTYNALI 503

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L + G   +A+++L E++R G+ P   T+      +  + +   A  ++  M E  + 
Sbjct: 504 HSLIARGYPNEAKDILHELIRRGLSPDVMTFTDVIDGFSKKGNFEEAFLVWSYMSERHV- 562

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ + + L+  +    RMD    ++  +  +GL PDL  Y  LIHG C       AC 
Sbjct: 563 KPDVVTCSALLNGYCRARRMDEANALFLKMLDAGLKPDLVLYNNLIHGFCSAGNMNAACN 622

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
               MI+ G LP   T      G 
Sbjct: 623 LVAMMIDDGFLPNITTHRAFALGF 646



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 118/257 (45%), Gaps = 14/257 (5%)

Query: 8   GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVF 67
           G+CK  R D A   L       V PN+  Y+  +  +C+          +  +  A K F
Sbjct: 333 GYCKKGRSDKAINLLNFF---NVRPNIFVYSSFMTKLCK----------DGNMLEASKTF 379

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127
            EM   G+ PD   ++I++  Y +      +   L  M + GI P+V TY+ ++   C  
Sbjct: 380 QEMSEFGLYPDCFCYTIIIGGYCKVGDINKAFQYLGEMLKFGITPSVTTYTLLINACCKS 439

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
           G +  AE LL  M+  G+ P   T+NC    +  +     A +L   M+  G+  P+  +
Sbjct: 440 GDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKGYLQKAFELLDIMRSAGMS-PDTVT 498

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           YN LI   +A    +  ++I +++   GL PD+ ++T +I G  +K  ++EA   +  M 
Sbjct: 499 YNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTFTDVIDGFSKKGNFEEAFLVWSYMS 558

Query: 248 EKGLLPQKVTFETLYRG 264
           E+ + P  VT   L  G
Sbjct: 559 ERHVKPDVVTCSALLNG 575



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 113/262 (43%), Gaps = 14/262 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
            I  +C    I    + L EM   G++ +V+ Y ++++ +C+ +           ++ A 
Sbjct: 260 FIESYCAEGNIQSGWKILMEMKNYGIKADVIAYTIVIDALCKIS----------CVKVAT 309

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +  +M   GI  D  S S V+  Y +  +   +++ LNF   +   P +  YSS +  L
Sbjct: 310 SLLFKMIHCGISVDSVSVSSVIDGYCKKGRSDKAINLLNFFNVR---PNIFVYSSFMTKL 366

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G + +A +   EM   G+ P    Y      Y    D N A +   +M + G+  P+
Sbjct: 367 CKDGNMLEASKTFQEMSEFGLYPDCFCYTIIIGGYCKVGDINKAFQYLGEMLKFGI-TPS 425

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y +LI        M M   +   +   GL PD+ ++  LI G  +K   ++A +   
Sbjct: 426 VTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKGYLQKAFELLD 485

Query: 245 EMIEKGLLPQKVTFETLYRGLI 266
            M   G+ P  VT+  L   LI
Sbjct: 486 IMRSAGMSPDTVTYNALIHSLI 507



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 125/307 (40%), Gaps = 23/307 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+ L+  +   +++ +A   + E+    + P++   N LL  + R   L          
Sbjct: 186 VYSMLVDCYVTESKVSLALNLIHEIKLLNIFPSMGVCNSLLKALLRSHQLDL-------- 237

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + + M+  G+  + +  S+ +  Y      Q     L  MK  GI   V  Y+ V
Sbjct: 238 --AWDILEGMQSFGMHLNASILSLFIESYCAEGNIQSGWKILMEMKNYGIKADVIAYTIV 295

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKED 178
           +  LC    ++ A  LL +M+  G+   + + +     Y  +GR D    +  +  ++  
Sbjct: 296 IDALCKISCVKVATSLLFKMIHCGISVDSVSVSSVIDGYCKKGRSDKAINLLNFFNVR-- 353

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
               PN+  Y+  +        M    + + ++   GL PD   YT++I G C+     +
Sbjct: 354 ----PNIFVYSSFMTKLCKDGNMLEASKTFQEMSEFGLYPDCFCYTIIIGGYCKVGDINK 409

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQS-DMLRTWRRLKKKLDE----ESITFGSEFQ 293
           A QY  EM++ G+ P   T+  L     +S DM      L++ + E    + +TF     
Sbjct: 410 AFQYLGEMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLID 469

Query: 294 NYHFKPY 300
            +  K Y
Sbjct: 470 GFGKKGY 476


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 137/293 (46%), Gaps = 46/293 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SL+ G C+   I  A + + EM+E G  P++ TYN+++NG+C+  +          I
Sbjct: 387 VYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGN----------I 436

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A  V ++  V+G  PDV +F+ ++  Y +  +   +L  +  M   GI P V TY+SV
Sbjct: 437 SDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSV 496

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF---------FKEYRG---------- 161
           +  LC  G+ ++  E   EM+  G  P+A TYN            +E  G          
Sbjct: 497 LNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGL 556

Query: 162 ----------------RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
                             D +GA  L++++ E G       ++NILIG + +   M M  
Sbjct: 557 VPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSA-TADTFNILIGAYSSKLNMQMAE 615

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
           +I+ ++   G  PDL +Y +L+ GLC+      A  +  EMI KG +P   TF
Sbjct: 616 KIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATF 668



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 149/324 (45%), Gaps = 26/324 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y +L+ G CK +++  A ++LG M+ +G  P+  TYN +++G C+   L  +        
Sbjct: 283 YNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAV 342

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  I  A ++F+E + + ++PD+  ++ ++    R     
Sbjct: 343 FKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLIL 402

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L  +N M E+G  P + TY+ ++  LC  G I DA  ++ + +  G  P   T+N   
Sbjct: 403 HALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLI 462

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y  R   + A++L  +M   G+  P++ +YN ++       +   V E + ++   G 
Sbjct: 463 DGYCKRLKLDSALQLVERMWTYGI-APDVITYNSVLNGLCKAGKAKEVNETFEEMILKGC 521

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  +Y +LI   C+  + +EA    V M + GL+P  V+F TL  G  ++  L     
Sbjct: 522 RPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYL 581

Query: 277 LKKKLDEESITFGSEFQNYHFKPY 300
           L +KLDE+  +  ++  N     Y
Sbjct: 582 LFQKLDEKGYSATADTFNILIGAY 605



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 120/263 (45%), Gaps = 12/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + ++++  C+   +  +   L ++++RG+  N  T N+ + G+C         R E+ + 
Sbjct: 214 FNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDG------RLEEAVA 267

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             E++        + PDV +++ ++    +  + Q +   L  M  +G  P   TY++++
Sbjct: 268 LVERMGAY-----VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTII 322

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +++A ELL + V  G  P   TY           D   A++L+ + +   L 
Sbjct: 323 DGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDL- 381

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YN L+        +    ++ N++   G  PD+ +Y ++I+GLC+     +A  
Sbjct: 382 KPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAV 441

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
              + I KG LP   TF TL  G
Sbjct: 442 VMNDAIVKGYLPDVFTFNTLIDG 464



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 121/279 (43%), Gaps = 12/279 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y + I  + +  R+  A      M      P    YN +++ +   A+ H         
Sbjct: 73  LYVASIQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVN-AAYH--------- 122

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A KV+  M   G+ PD  + ++ L  +    +P ++L  L  + E+G     A Y +V
Sbjct: 123 DQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTV 182

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V+ L + G   +A  L  EM+   V P   T+N        + D   +  L  ++ + G+
Sbjct: 183 VRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGM 242

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              N  + NI I       R++    +   + G+ + PD+ +Y  L+ GLC+  K +EA 
Sbjct: 243 SA-NKFTCNIWIRGLCEDGRLEEAVALVERM-GAYVAPDVVTYNTLMRGLCKDSKVQEAA 300

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
           QY   M+ +G +P   T+ T+  G  +S ML+    L K
Sbjct: 301 QYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLK 339



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 25/171 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEK-- 58
           Y  LI  +CKIN+++ A   +  M + G+ P+ V++N L++G CR   L  +   F+K  
Sbjct: 528 YNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLD 587

Query: 59  ----------------------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  ++ AEK+F EM  +G +PD+ ++ I++    +A    
Sbjct: 588 EKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVD 647

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
            +   L  M  KG  P++AT+  ++  L    R+ +A  ++  MVR GV P
Sbjct: 648 RAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVP 698


>gi|225436259|ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Vitis vinifera]
          Length = 566

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 155/317 (48%), Gaps = 61/317 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEP-NVVTYNVLLNGVCRRASLHPSERFEKTI 60
           + +L+   C+   +  AE+ L     R V P +  ++N++LNG C             ++
Sbjct: 223 FQNLLSALCRYKNVQDAEQLL--FCNRNVFPFDTKSFNIILNGWCNVIG---------SM 271

Query: 61  RNAEKVFDEMRVRGIEPD-------------VTSFSIVLHVYSRAHQPQLSLDK------ 101
           R AE+ + EM  RGI+ D             VT+ + VL ++++  + +++ D+      
Sbjct: 272 REAERFWREMSNRGIQRDVVSYSSIISCYSKVTNLNKVLKLFNQMKEMEIAPDRKVYNAV 331

Query: 102 -------------LNFMKE---KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
                        LN MK    KGI P   TY+S++K L    +I +A+E+  EM++ G+
Sbjct: 332 VHALAKASFVKEALNLMKAMEGKGIAPDSVTYNSLIKPLSRARKINEAKEVFDEMLQRGL 391

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P+  TY+ FF   R  K       L  +MKE G C P+  +Y +LI  F    ++D V 
Sbjct: 392 SPTIRTYHAFF---RILKSGEEVFMLLEKMKETG-CHPDKDTYIMLIRRFCRWRQLDNVF 447

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           ++W+++  +G+GPD  SY +LIHGL    K +EA +Y++EM EK  LP+  T        
Sbjct: 448 KLWSEMSENGVGPDRSSYIVLIHGLFLNGKLEEAYKYYIEMKEKQFLPEPKT-------- 499

Query: 266 IQSDMLRTWRRLKKKLD 282
              DML+ W   K+  D
Sbjct: 500 --EDMLQAWISGKETAD 514



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 13/177 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++++   K + +  A   +  M  +G+ P+ VTYN L+  + R           + I
Sbjct: 327 VYNAVVHALAKASFVKEALNLMKAMEGKGIAPDSVTYNSLIKPLSR----------ARKI 376

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A++VFDEM  RG+ P + ++     +     +  + L+K   MKE G  P   TY  +
Sbjct: 377 NEAKEVFDEMLQRGLSPTIRTYHAFFRILKSGEEVFMLLEK---MKETGCHPDKDTYIML 433

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           ++  C   ++++  +L  EM  NGV P   +Y               A K Y +MKE
Sbjct: 434 IRRFCRWRQLDNVFKLWSEMSENGVGPDRSSYIVLIHGLFLNGKLEEAYKYYIEMKE 490



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 42/223 (18%)

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL--- 137
           + SI++  Y   H    +++     K+      +  + +++  LC    ++DAE+LL   
Sbjct: 187 TLSIMIRRYCAVHDVGKAINTFYAHKQFKFGVGIEEFQNLLSALCRYKNVQDAEQLLFCN 246

Query: 138 ----------GEMVRNGVCP---SAETYNCFFKEYRGR-------------------KDA 165
                       ++ NG C    S      F++E   R                    + 
Sbjct: 247 RNVFPFDTKSFNIILNGWCNVIGSMREAERFWREMSNRGIQRDVVSYSSIISCYSKVTNL 306

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK---GSGLGPDLDS 222
           N  +KL+ QMKE  +  P+   YN ++    AL +   V+E  N +K   G G+ PD  +
Sbjct: 307 NKVLKLFNQMKEMEIA-PDRKVYNAVV---HALAKASFVKEALNLMKAMEGKGIAPDSVT 362

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           Y  LI  L   +K  EA + F EM+++GL P   T+   +R L
Sbjct: 363 YNSLIKPLSRARKINEAKEVFDEMLQRGLSPTIRTYHAFFRIL 405


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 144/280 (51%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI+ +C+ +R  +A   LG+M++ G +P++VT   LLNG C+        RF++ + 
Sbjct: 653 FTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQ------GNRFQEAV- 705

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + D M   G+EP+V  ++ V++   +      +L+    M++KGI     TY++++
Sbjct: 706 ---SLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLI 762

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+ GR  DA  LL +MV+  + P+   +      +    +   A  LY++M    + 
Sbjct: 763 SGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSV- 821

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN LI  F    R+   + +++ +   G  PD+ +Y  LI G C+ ++ ++  +
Sbjct: 822 HPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMK 881

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            F EM  +GL+    T+ TL  G  Q+  L   +++  ++
Sbjct: 882 LFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRM 921



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 141/277 (50%), Gaps = 12/277 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI+ +C+ +R+ +A   LG+M++ G +P++VT+  LL+G C R  +H          
Sbjct: 103 FTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIH---------- 152

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG-ICPTVATYSSV 120
           +A  +   M   G EP+V  ++ ++    +     ++L+ LN M++KG +   + TY+++
Sbjct: 153 DAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTL 212

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G    A  +L +M +  + P   T+      +  + + + A +LY+QM +  +
Sbjct: 213 LTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSI 272

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  +YN LI       R+   ++ ++ +   G  P++ +Y  LI+G C+ ++ ++  
Sbjct: 273 G-PNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGM 331

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           + F  M  +GL+    T+ TL  G  Q   LR  + +
Sbjct: 332 KLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDI 368



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 139/283 (49%), Gaps = 11/283 (3%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y +LI G C   R   A R L +M++R ++PNV+ +  L++   +          E  + 
Sbjct: 758  YNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVK----------EGNLL 807

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             A+ ++ EM  R + P++ +++ +++ +    +   +    + M  KG  P V TY++++
Sbjct: 808  EAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLI 867

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               C   R+ED  +L  EM   G+   A TYN     Y      N A K++ +M + G+ 
Sbjct: 868  TGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGV- 926

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             P++ +YNIL+       +++    +  D++ + +  D+ +Y ++I G+C   K KEA  
Sbjct: 927  PPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWC 986

Query: 242  YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
             F  +  KG+    + + T+  GL ++ + R   +L  ++ E+
Sbjct: 987  LFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKED 1029



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 136/294 (46%), Gaps = 27/294 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI- 60
           + SL++G+C  NRI  A   +  M++ G EPNVV YN L++ +C+   ++ +      + 
Sbjct: 138 FGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEME 197

Query: 61  -------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                    R A ++  +M  R I PDV +F+ ++  + +    
Sbjct: 198 KKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNL 257

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             + +    M +  I P   TY+S++  LC  GR+  A++    M   G  P+  TYN  
Sbjct: 258 DEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTL 317

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +   +     MKL+++M  +GL V +  +YN LI  +  + ++ + ++I++ +   G
Sbjct: 318 INGFCKSRRVEDGMKLFQRMYREGL-VGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCG 376

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           + PD+ ++ +L+HGLC   +   A   F +M         V +  +  GL ++D
Sbjct: 377 VTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKAD 430



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 147/320 (45%), Gaps = 51/320 (15%)

Query: 16  DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI 75
           D  + FL EM++    P+VV +  LL  +   A+L    R+E  I  ++    +M + GI
Sbjct: 48  DALDLFL-EMVQSQPLPSVVDFTRLLTAI---ANL---RRYETVIYFSQ----QMELFGI 96

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
             D+ SF+I++H + R  +  L+L  L  M + G  P++ T+ S++   C   RI DA  
Sbjct: 97  SHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFS 156

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---------------DGL 180
           L+  MV++G  P+   YN          D N A++L  +M++                GL
Sbjct: 157 LVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGL 216

Query: 181 CV--------------------PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
           C                     P++ ++  LI  F+    +D  +E++  +  S +GP+ 
Sbjct: 217 CYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNT 276

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRR 276
            +Y  LI+GLC   +   A + F  M  KG  P  VT+ TL  G  +S    D ++ ++R
Sbjct: 277 VTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQR 336

Query: 277 L-KKKLDEESITFGSEFQNY 295
           + ++ L  ++ T+ +    Y
Sbjct: 337 MYREGLVGDTFTYNTLIHGY 356



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 126/265 (47%), Gaps = 17/265 (6%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            +T+LI  + K   +  A+    EMI R V PN++TYN L+NG C +  L           
Sbjct: 793  FTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLG---------- 842

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            +A+ +FD M  +G  PDV +++ ++  + ++ + +  +     M  +G+     TY++++
Sbjct: 843  DAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLI 902

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               C  G++  A+++   MV  GV P   TYN              A+ +   ++++ + 
Sbjct: 903  HGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMD 962

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIW---NDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
            V ++ +YNI+I     + R D V+E W     +   G+  D  +Y  +I GLC     +E
Sbjct: 963  V-DIITYNIII---QGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRRE 1018

Query: 239  ACQYFVEMIEKGLLPQKVTFETLYR 263
            A +    M E G +P +  ++   R
Sbjct: 1019 ADKLCTRMKEDGFMPSERIYDETLR 1043



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 122/289 (42%), Gaps = 44/289 (15%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           + D A     EM++    P++V +  +L  + +        +F+  I     +F +M   
Sbjct: 595 KFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKM------NKFDIVIY----LFHKMENL 644

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           GI  D+ SF+I++H + R  +  L+L  L  M + G  P++ T  S++   C   R ++A
Sbjct: 645 GISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEA 704

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV----------- 182
             L+  M   G+ P+   YN         +D N A++++  M++ G+             
Sbjct: 705 VSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISG 764

Query: 183 -----------------------PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
                                  PN+  +  LI  F+    +   + ++ ++    + P+
Sbjct: 765 LCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPN 824

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           + +Y  LI+G C + +  +A   F  M+ KG  P  VT+ TL  G  +S
Sbjct: 825 ILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKS 873



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 101/239 (42%), Gaps = 41/239 (17%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +F EM      P +  F+ VL   ++ ++  + +   + M+  GI   + +++ ++
Sbjct: 598 DAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILI 657

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            C C C R   A  LLG+M++ G  PS  T                          +G C
Sbjct: 658 HCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLL---------------------NGFC 696

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N            A++ +D + E+       GL P++  Y  +I+GLC+ +    A +
Sbjct: 697 QGNRFQE--------AVSLVDSMAEL-------GLEPNVVIYNTVINGLCKNRDLNNALE 741

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRL-KKKLDEESITFGSEFQNY 295
            F  M +KG++   VT+ TL  GL  S    D  R  R + K+K+D   I F +    +
Sbjct: 742 IFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTF 800



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 1/133 (0%)

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           R EDA +L  EMV++   PS   +          +     +   +QM+  G+   +++S+
Sbjct: 45  RFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGIS-HDLYSF 103

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
            ILI  F   +R+ +   I   +   G  P + ++  L+HG C + +  +A      M++
Sbjct: 104 TILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVK 163

Query: 249 KGLLPQKVTFETL 261
            G  P  V + TL
Sbjct: 164 SGYEPNVVVYNTL 176


>gi|125551971|gb|EAY97680.1| hypothetical protein OsI_19602 [Oryza sativa Indica Group]
          Length = 586

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 145/274 (52%), Gaps = 17/274 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+  WC    +  A R   EM+E G++P+VV +N ++ G+ R       +R  + + 
Sbjct: 327 YTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLR------GQRRPEAV- 379

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K+F+ M+ +G  P+V ++++++  + +  +  +++     M++ G  P VATY+ ++
Sbjct: 380 ---KMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLL 436

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               +  R++    LL EM + G  P   TYN   K    R   + A ++Y++M + GL 
Sbjct: 437 VGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGL- 495

Query: 182 VPNMHSYNILIGMFMALNRMDMVR-EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            P +H+YN+++  +    R  M+   +W ++   G+ PD++SYT+ I+G     + +EAC
Sbjct: 496 EPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEAC 555

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTW 274
           +Y  EMI+KG+   ++ +         +D  + W
Sbjct: 556 KYIEEMIQKGMKTPQIDYNKF-----AADFSKGW 584



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 114/242 (47%), Gaps = 4/242 (1%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           I+NA  VF+ MR  G +  V SF+ +L   ++    + +    + M+++   P + +Y++
Sbjct: 271 IKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRMRDR-YAPDLRSYTA 329

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMKED 178
           ++   C+   + +A  +  EM+ NG+ P    +N   +   RG++    A+K++  MK  
Sbjct: 330 LMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPE-AVKMFELMKAK 388

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G   PN+ +Y +LI       +MDM    + +++  G  PD+ +YT L+ G    ++   
Sbjct: 389 GP-APNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDR 447

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
                 EM +KG  P   T+  L + L   +M     R+ KK+ ++ +       N   K
Sbjct: 448 VTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMK 507

Query: 299 PY 300
            Y
Sbjct: 508 SY 509


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 143/277 (51%), Gaps = 12/277 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK+ R+  A   L +MI++G  P+++ YN+L+NG+C+      +++ +++I 
Sbjct: 221 YGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCK------ADQVDESIA 274

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +        GI+PDV ++S V++   R+++   +   L ++K +G  P V  YS+++
Sbjct: 275 LLRRAVSG----GIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLI 330

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++++A +L   M  +G      TY+            + A  L  +M   G  
Sbjct: 331 DGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGT- 389

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC- 240
            P+  +YN LI     LN +D   E+  +++ S   P   +Y +LIHG+C  ++   A  
Sbjct: 390 PPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAAL 449

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            YF EMI+ G++P  +T+  L  GL +S  L   R L
Sbjct: 450 DYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHL 486



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 129/267 (48%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G CK NR+  A   L  M  RG  P+V+TY +L++G+C+          E  + 
Sbjct: 116 YSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCK----------ESKVA 165

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V  EM   G  P++ +++ +LH   RA +   +L  +  M  +G  P V TY +++
Sbjct: 166 AAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLI 225

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR++DA  +L +M+  G  P    YN            + ++ L R+    G+ 
Sbjct: 226 DGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGI- 284

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ +I      NR+D    +   VK  G  PD+  Y+ LI GLC+  K  EA  
Sbjct: 285 KPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD 344

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            +  M   G     VT+ TL  GL ++
Sbjct: 345 LYEVMTGDGCDADVVTYSTLIDGLCKA 371



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/268 (32%), Positives = 127/268 (47%), Gaps = 13/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G CK N  D A+     M      P++VTYN LL+G+ R   L   ER      
Sbjct: 13  YNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKL---ER------ 63

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM  R    DV SF+I++    RA + + +L+    M ++   P V TYS ++
Sbjct: 64  -AMALFQEMLDRR-SHDVISFNILVTGLCRAGKIETALEFFRKMDDR-CSPNVITYSVLI 120

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R+  A ELL  M   G  P   TY               A ++ R+M + G C
Sbjct: 121 DGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG-C 179

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN+ +YN L+       R+     +  D+   G  P++ +Y  LI GLC+  + K+AC 
Sbjct: 180 VPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACA 239

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              +MI+KG  P  + +  L  GL ++D
Sbjct: 240 MLADMIDKGGTPDLMIYNMLINGLCKAD 267



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 112/226 (49%), Gaps = 8/226 (3%)

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           MR  G EP+V +++ ++    + ++P  + +    MK     P++ TY++++  L   G+
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           +E A  L  EM+ +       ++N              A++ +R+M  D  C PN+ +Y+
Sbjct: 61  LERAMALFQEML-DRRSHDVISFNILVTGLCRAGKIETALEFFRKM--DDRCSPNVITYS 117

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
           +LI      NR+    E+   +K  G  PD+ +YT+L+ GLC++ K   A +   EM++ 
Sbjct: 118 VLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDA 177

Query: 250 GLLPQKVTFETLYRGLIQ----SDMLRTWRRLK-KKLDEESITFGS 290
           G +P  VT+ +L  GL +    SD L   R +  +      +T+G+
Sbjct: 178 GCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGT 223


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 134/263 (50%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+ +   I+ A R   EM+  G+E N++ +N LLNGVC+        + EK + 
Sbjct: 314 YNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAG------KMEKAL- 366

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++  EM  +G+EPD  ++S+++  + R      + + L+ MK++ + PTV TYS ++
Sbjct: 367 ---EIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVII 423

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC CG ++    +L EMV NG+ P+A  Y      +        +  +  +M+E G+ 
Sbjct: 424 NGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGI- 482

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++  YN LI  F    RM+  R    ++    L P+  +Y   I G  +  + + A +
Sbjct: 483 LPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADR 542

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
           YF EM+  G+LP    +  L  G
Sbjct: 543 YFNEMLSCGVLPNVGIYTALIEG 565



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 122/257 (47%), Gaps = 12/257 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G CK   +D A + L EM  +G+ P++VTYN+L++G+C+             I 
Sbjct: 629 YNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGE----------IE 678

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +FD++  RG+ P+  +++ ++  Y ++  P  +   L  M  +G+ P    Y+ ++
Sbjct: 679 RAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVIL 738

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   + E A +L  EM+  G   S  ++N   + Y        A  L  +M E    
Sbjct: 739 NFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIEGYCKSGKLQEANHLLEEMIEKQF- 796

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN  +Y  LI        M   + +W +++   + P   +YT L+HG        E   
Sbjct: 797 IPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSA 856

Query: 242 YFVEMIEKGLLPQKVTF 258
            F EM+ KG+ P K+T+
Sbjct: 857 LFEEMVAKGIEPDKMTY 873



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 144/308 (46%), Gaps = 27/308 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y SLI G+CK  R++ A  +L EM+ER + PN  TY   ++G  +   +  ++R+     
Sbjct: 489 YNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEML 548

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  +  A  VF  +  R +  DV ++S+++H  SR  +  
Sbjct: 549 SCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMH 608

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    + ++EKG+ P   TY+S++   C  G ++ A +LL EM   G+ P   TYN   
Sbjct: 609 EAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILI 668

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                  +   A  L+  ++  GL  PN  +Y  ++  +          ++  ++   G+
Sbjct: 669 DGLCKAGEIERAKNLFDDIEGRGL-TPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGV 727

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD   Y ++++  C+++K+++A   F EM+EKG     V+F TL  G  +S  L+    
Sbjct: 728 PPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKG-FASTVSFNTLIEGYCKSGKLQEANH 786

Query: 277 LKKKLDEE 284
           L +++ E+
Sbjct: 787 LLEEMIEK 794



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 137/289 (47%), Gaps = 26/289 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR-------------- 46
           ++ +L+ G CK  +++ A   + EM+E+GVEP+  TY++L+ G CR              
Sbjct: 348 IWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEM 407

Query: 47  -RASLHPSERFEKTIRNA----------EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
            +  L P+      I N             +  EM + G++P+   ++ ++  +++  + 
Sbjct: 408 KKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRV 467

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + S   L  M+E+GI P V  Y+S++   C   R+E+A   L EM+   + P+A TY  F
Sbjct: 468 EESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAF 527

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y    +   A + + +M   G+ +PN+  Y  LI        +     ++  +    
Sbjct: 528 IDGYSKAGEMEIADRYFNEMLSCGV-LPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRR 586

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           +  D+ +Y++LIHGL    K  EA   F E+ EKGLLP   T+ +L  G
Sbjct: 587 VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISG 635



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 140/311 (45%), Gaps = 26/311 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y+ LI G C+   +  A   L EM +R + P V+TY+V++NG+CR  +L  +        
Sbjct: 384 YSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMV 443

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  +  +  + + MR +GI PDV  ++ ++  + +A + +
Sbjct: 444 MNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRME 503

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L  M E+ + P   TY + +      G +E A+    EM+  GV P+   Y    
Sbjct: 504 EARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALI 563

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           + +    +   A  ++R +    + + ++ +Y++LI       +M     I+++++  GL
Sbjct: 564 EGHCKEGNVTEAFSVFRFILSRRV-LQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGL 622

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  +Y  LI G C++    +A Q   EM  KG+ P  VT+  L  GL ++  +   + 
Sbjct: 623 LPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKN 682

Query: 277 LKKKLDEESIT 287
           L   ++   +T
Sbjct: 683 LFDDIEGRGLT 693



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 150/316 (47%), Gaps = 33/316 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEM-----------------IERGVEPNVVTYNVLLNGV 44
           YT++I   CK+  +  A+R L EM                 +++G+ P++ TY++L+NG 
Sbjct: 227 YTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGF 286

Query: 45  CRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNF 104
           C           EK  R A+ +  EM   G++P+  +++ ++  + R    + +    + 
Sbjct: 287 C----------MEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDE 336

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M   GI   +  +++++  +C  G++E A E++ EM+  GV P ++TY+   + +   ++
Sbjct: 337 MVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQN 396

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
              A +L  +MK+  L  P + +Y+++I        +     I  ++  +GL P+   YT
Sbjct: 397 MARAFELLDEMKKRKL-APTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYT 455

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKK 279
            L+    ++ + +E+      M E+G+LP    + +L  G  ++  +   R      L++
Sbjct: 456 TLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLER 515

Query: 280 KLDEESITFGSEFQNY 295
           +L   + T+G+    Y
Sbjct: 516 RLRPNAHTYGAFIDGY 531



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 113/257 (43%), Gaps = 48/257 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G+CK      A + L EM+ RGV P+   YNV+LN  C+       E+FEK + 
Sbjct: 699 YAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKE------EKFEKAL- 751

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F EM  +G    V SF+ ++  Y ++ + Q +   L  M EK   P   TY+S++
Sbjct: 752 ---DLFQEMLEKGFASTV-SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLI 807

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + +A+ L  EM    V P+A+TY                             
Sbjct: 808 DHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSL-------------------------- 841

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              +H Y+        +  M  V  ++ ++   G+ PD  +Y ++I   C +    EAC+
Sbjct: 842 ---LHGYH-------NIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACK 891

Query: 242 YFVEMIEKGLLPQKVTF 258
              E++ KG +P K  F
Sbjct: 892 LKDEILVKG-MPMKSGF 907



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 136/294 (46%), Gaps = 14/294 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
            SL+    K N++++  +    M    V P+V TY  +++  C+  ++  ++R    +  
Sbjct: 193 NSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGE 252

Query: 63  AEKVFDE-------MRVRGIEPDVTSFSIVLHVY---SRAHQPQLSLDKLNFMKEKGICP 112
             ++ DE       M  +G+ PD+ ++ I+++ +    R+ + +L L +   M + G+ P
Sbjct: 253 KARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLE---MIDVGLKP 309

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
              TY++++      G IE A  +  EMV  G+  +   +N              A+++ 
Sbjct: 310 EPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIM 369

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
           ++M E G+  P+  +Y++LI        M    E+ +++K   L P + +Y+++I+GLC 
Sbjct: 370 QEMMEKGV-EPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCR 428

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
               +       EM+  GL P  V + TL     +   +   R + +++ E+ I
Sbjct: 429 CGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGI 482



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 122/279 (43%), Gaps = 33/279 (11%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
           PN V +++L++          S R    +  A  VF   +     P + S + +L    +
Sbjct: 152 PNSVIFDMLMD----------SYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLK 201

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE------------ 139
            ++ +L     + M    + P V TY++++   C  G ++DA+ +L E            
Sbjct: 202 GNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAI 261

Query: 140 -----MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
                MV  G+ P   TY+     +   K +  A  +  +M + GL  P   +YN LI  
Sbjct: 262 ELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGL-KPEPITYNALIDG 320

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
           FM    ++    I +++   G+  +L  +  L++G+C+  K ++A +   EM+EKG+ P 
Sbjct: 321 FMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPD 380

Query: 255 KVTFETLYRGLIQS-DMLRTWRRL----KKKLDEESITF 288
             T+  L  G  +  +M R +  L    K+KL    +T+
Sbjct: 381 SQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTY 419



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 34/169 (20%)

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           +A   S+VKC  SC               NG  P++  ++     YR       A+ ++ 
Sbjct: 135 LAVLGSIVKCYRSC---------------NG-SPNSVIFDMLMDSYRKMGFLVEAVNVFL 178

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
             K      P++ S N L+G  +  N++++  ++++ +    + PD+ +YT +I   C+ 
Sbjct: 179 GPKNFEF-RPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKV 237

Query: 234 QKWKEACQYFVE-----------------MIEKGLLPQKVTFETLYRGL 265
              K+A +  +E                 M++KGL+P   T++ L  G 
Sbjct: 238 GNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGF 286


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 134/263 (50%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+ +   I+ A R   EM+  G+E N++ +N LLNGVC+        + EK + 
Sbjct: 323 YNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAG------KMEKAL- 375

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++  EM  +G+EPD  ++S+++  + R      + + L+ MK++ + PTV TYS ++
Sbjct: 376 ---EIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVII 432

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC CG ++    +L EMV NG+ P+A  Y      +        +  +  +M+E G+ 
Sbjct: 433 NGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGI- 491

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++  YN LI  F    RM+  R    ++    L P+  +Y   I G  +  + + A +
Sbjct: 492 LPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADR 551

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
           YF EM+  G+LP    +  L  G
Sbjct: 552 YFNEMLSCGVLPNVGIYTALIEG 574



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 146/313 (46%), Gaps = 27/313 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y SLI G CK   +D A + L EM  +G+ P++VTYN+L++G+C+   +  ++       
Sbjct: 638 YNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIE 697

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                K    A ++ +EM +RG+ PD   ++++L+   +  + +
Sbjct: 698 GRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFE 757

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +LD    M EKG   TV +++++++  C  G++++A  LL EM+     P+  TY    
Sbjct: 758 KALDLFQEMLEKGFASTV-SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLI 816

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      A +L+ +M+E  + +P   +Y  L+  +  +  M  V  ++ ++   G+
Sbjct: 817 DHNCKAGMMGEAKRLWLEMQERNV-MPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGI 875

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD  +Y ++I   C +    EAC+   E++ KG+      ++ L + L + +      +
Sbjct: 876 EPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLK 935

Query: 277 LKKKLDEESITFG 289
           L  ++ E     G
Sbjct: 936 LLNEIGESGFRLG 948



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 144/308 (46%), Gaps = 27/308 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y SLI G+CK  R++ A  +L EM+ER + PN  TY   ++G  +   +  ++R+     
Sbjct: 498 YNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEML 557

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  +  A  VF  +  R +  DV ++S+++H  SR  +  
Sbjct: 558 SCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMH 617

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    + ++EKG+ P   TY+S++   C  G ++ A +LL EM   G+ P   TYN   
Sbjct: 618 EAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILI 677

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                  +   A  L+  ++  GL  PN  +Y  ++  +          ++  ++   G+
Sbjct: 678 DGLCKAGEIERAKNLFDDIEGRGL-TPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGV 736

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD   Y ++++  C+++K+++A   F EM+EKG     V+F TL  G  +S  L+    
Sbjct: 737 PPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKG-FASTVSFNTLIEGYCKSGKLQEANH 795

Query: 277 LKKKLDEE 284
           L +++ E+
Sbjct: 796 LLEEMIEK 803



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 137/289 (47%), Gaps = 26/289 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR-------------- 46
           ++ +L+ G CK  +++ A   + EM+E+GVEP+  TY++L+ G CR              
Sbjct: 357 IWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEM 416

Query: 47  -RASLHPSERFEKTIRNA----------EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
            +  L P+      I N             +  EM + G++P+   ++ ++  +++  + 
Sbjct: 417 KKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRV 476

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + S   L  M+E+GI P V  Y+S++   C   R+E+A   L EM+   + P+A TY  F
Sbjct: 477 EESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAF 536

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y    +   A + + +M   G+ +PN+  Y  LI        +     ++  +    
Sbjct: 537 IDGYSKAGEMEIADRYFNEMLSCGV-LPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRR 595

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           +  D+ +Y++LIHGL    K  EA   F E+ EKGLLP   T+ +L  G
Sbjct: 596 VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISG 644



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 142/288 (49%), Gaps = 17/288 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I   CK+  +  A+R L EM E+G  PN+VTYNV++ G+CR   L  +   ++++ 
Sbjct: 218 YTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMV 277

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVY---SRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           +          +G+ PD+ ++ I+++ +    R+ + +L L +   M + G+ P   TY+
Sbjct: 278 D----------KGLVPDLYTYDILINGFCMEKRSREAKLMLLE---MIDVGLKPEPITYN 324

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++      G IE A  +  EMV  G+  +   +N              A+++ ++M E 
Sbjct: 325 ALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEK 384

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P+  +Y++LI        M    E+ +++K   L P + +Y+++I+GLC     + 
Sbjct: 385 GV-EPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQG 443

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
                 EM+  GL P  V + TL     +   +   R + +++ E+ I
Sbjct: 444 TNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGI 491



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 128/290 (44%), Gaps = 43/290 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI+G  +  ++  A     E+ E+G+ PN  TYN L++G C++ +          + 
Sbjct: 603 YSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGN----------VD 652

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ +EM ++GI PD+ +++I++    +A + + + +  + ++ +G+ P   TY+++V
Sbjct: 653 KASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMV 712

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C       A +LL EM+  GV P A  YN         +    A+ L+++M E G  
Sbjct: 713 DGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA 772

Query: 182 ---------------------------------VPNMHSYNILIGMFMALNRMDMVREIW 208
                                            +PN  +Y  LI        M   + +W
Sbjct: 773 STVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLW 832

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
            +++   + P   +YT L+HG        E    F EM+ KG+ P K+T+
Sbjct: 833 LEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTY 882



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 140/311 (45%), Gaps = 26/311 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y+ LI G C+   +  A   L EM +R + P V+TY+V++NG+CR  +L  +        
Sbjct: 393 YSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMV 452

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  +  +  + + MR +GI PDV  ++ ++  + +A + +
Sbjct: 453 MNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRME 512

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L  M E+ + P   TY + +      G +E A+    EM+  GV P+   Y    
Sbjct: 513 EARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALI 572

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           + +    +   A  ++R +    + + ++ +Y++LI       +M     I+++++  GL
Sbjct: 573 EGHCKEGNVTEAFSVFRFILSRRV-LQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGL 631

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  +Y  LI G C++    +A Q   EM  KG+ P  VT+  L  GL ++  +   + 
Sbjct: 632 LPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKN 691

Query: 277 LKKKLDEESIT 287
           L   ++   +T
Sbjct: 692 LFDDIEGRGLT 702



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 125/264 (47%), Gaps = 12/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G+CK      A + L EM+ RGV P+   YNV+LN  C+       E+FEK + 
Sbjct: 708 YAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKE------EKFEKAL- 760

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F EM  +G    V SF+ ++  Y ++ + Q +   L  M EK   P   TY+S++
Sbjct: 761 ---DLFQEMLEKGFASTV-SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLI 816

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + +A+ L  EM    V P+A+TY      Y    + +    L+ +M   G+ 
Sbjct: 817 DHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGI- 875

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y ++I  +     +    ++ +++   G+   + +Y  LI  LC+K+++ E  +
Sbjct: 876 EPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLK 935

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
              E+ E G      T   + RG 
Sbjct: 936 LLNEIGESGFRLGLPTCSVIARGF 959



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 125/263 (47%), Gaps = 11/263 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
            SL+    K N++++  +    M    V P+V TY  +++  C+  +          +++
Sbjct: 184 NSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGN----------VKD 233

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A++V  EM  +G  P++ ++++++    RA     +++    M +KG+ P + TY  ++ 
Sbjct: 234 AKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILIN 293

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C   R  +A+ +L EM+  G+ P   TYN     +  + D   A ++  +M   G+  
Sbjct: 294 GFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGI-E 352

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
            N+  +N L+       +M+   EI  ++   G+ PD  +Y++LI G C  Q    A + 
Sbjct: 353 ANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFEL 412

Query: 243 FVEMIEKGLLPQKVTFETLYRGL 265
             EM ++ L P  +T+  +  GL
Sbjct: 413 LDEMKKRKLAPTVLTYSVIINGL 435



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 2/165 (1%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P++ + +S++  L    ++E   ++   M  + V P   TY      +    +   A ++
Sbjct: 178 PSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRV 237

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
             +M E G C PN+ +YN++IG       +D   E+   +   GL PDL +Y +LI+G C
Sbjct: 238 LLEMGEKG-CSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFC 296

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI-QSDMLRTWR 275
            +++ +EA    +EMI+ GL P+ +T+  L  G + Q D+ + +R
Sbjct: 297 MEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFR 341



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 120/260 (46%), Gaps = 11/260 (4%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
           PN V +++L++          S R    +  A  VF   +     P + S + +L    +
Sbjct: 143 PNSVIFDMLMD----------SYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLK 192

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
            ++ +L     + M    + P V TY++++   C  G ++DA+ +L EM   G  P+  T
Sbjct: 193 GNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVT 252

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           YN         +  + A++L R M + GL VP++++Y+ILI  F    R    + +  ++
Sbjct: 253 YNVIIGGLCRARLLDEAIELKRSMVDKGL-VPDLYTYDILINGFCMEKRSREAKLMLLEM 311

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              GL P+  +Y  LI G   +   ++A +   EM+  G+    + + TL  G+ ++  +
Sbjct: 312 IDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKM 371

Query: 272 RTWRRLKKKLDEESITFGSE 291
                + +++ E+ +   S+
Sbjct: 372 EKALEIMQEMMEKGVEPDSQ 391



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 91/203 (44%), Gaps = 25/203 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           + +LI G+CK  ++  A   L EMIE+   PN VTY  L++  C+   +  ++R      
Sbjct: 777 FNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQ 836

Query: 57  EKTIRNAEK--------------------VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           E+ +    K                    +F+EM  +GIEPD  ++ +++  Y R     
Sbjct: 837 ERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVM 896

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    + +  KG+  +VA Y ++++ LC      +  +LL E+  +G      T +   
Sbjct: 897 EACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIA 956

Query: 157 KEYRGRKDANGAMKLYRQMKEDG 179
           + ++   + + A ++ R M + G
Sbjct: 957 RGFQIAGNMDEAAEVLRSMVKFG 979



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 10/174 (5%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            YTSL++G+  I  +        EM+ +G+EP+ +TY V+++  CR          E  + 
Sbjct: 847  YTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCR----------EGNVM 896

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             A K+ DE+ V+G+   V ++  ++    +  +    L  LN + E G    + T S + 
Sbjct: 897  EACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIA 956

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
            +     G +++A E+L  MV+ G   +  +        +   ++  +  L +QM
Sbjct: 957  RGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQM 1010



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 81/174 (46%), Gaps = 17/174 (9%)

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           +A   S+VKC  SC               NG  P++  ++     YR       A+ ++ 
Sbjct: 126 LAVLGSIVKCYRSC---------------NG-SPNSVIFDMLMDSYRKMGFLVEAVNVFL 169

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
             K      P++ S N L+G  +  N++++  ++++ +    + PD+ +YT +I   C+ 
Sbjct: 170 GPKNFEF-RPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKV 228

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              K+A +  +EM EKG  P  VT+  +  GL ++ +L     LK+ + ++ + 
Sbjct: 229 GNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLV 282


>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 485

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 143/268 (53%), Gaps = 16/268 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ GW +   +    +   +M++ G +P++VTY ++++ +C            KT R
Sbjct: 208 YSILLEGWGRAPNLPKMRKVYSDMLDAGCQPDIVTYGIMVDSLC------------KTGR 255

Query: 62  NAEKVF--DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
             E VF   +M  RG +P    +S+++H Y    + + ++     M++ GI P V  Y++
Sbjct: 256 VEEAVFVVQDMTSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMQKDGIVPDVVVYNA 315

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +V   C   + ++A  ++ +M  +G+ P++ T+N    +       + A +++R+M +  
Sbjct: 316 LVTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMIKR- 374

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C P+  +Y ++I MF   +R++M  ++W  ++     P + ++++LI+GLC+K +  +A
Sbjct: 375 -CQPDSDTYTMMIKMFCENDRLEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQA 433

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           C    +MIEKG+ P   TF  L + L++
Sbjct: 434 CVLLEDMIEKGIRPPGSTFGKLRQLLLK 461



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 133/276 (48%), Gaps = 17/276 (6%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           + +  ++D A      M + GV PN+  +N LL  +C+           K +R A+++F+
Sbjct: 146 YARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLCALCK----------SKNVRKAQEIFE 195

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
           +M  R   PD  ++SI+L  + RA          + M + G  P + TY  +V  LC  G
Sbjct: 196 QMNGR-FSPDAKTYSILLEGWGRAPNLPKMRKVYSDMLDAGCQPDIVTYGIMVDSLCKTG 254

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           R+E+A  ++ +M   G  P+   Y+     Y        A+  +  M++DG+ VP++  Y
Sbjct: 255 RVEEAVFVVQDMTSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMQKDGI-VPDVVVY 313

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N L+  F  + + D    + +D++G G+ P+  ++ ++++ L    K  EA + F  MI+
Sbjct: 314 NALVTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMIK 373

Query: 249 KGLLPQKVTFETLYRGLIQSD----MLRTWRRLKKK 280
           +   P   T+  + +   ++D     L+ W+ ++ K
Sbjct: 374 R-CQPDSDTYTMMIKMFCENDRLEMALKVWKYMRLK 408



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 108/226 (47%), Gaps = 5/226 (2%)

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           MR +G+  +V +F I++  Y+RA +   ++   N M++ G+ P +A ++S++  LC    
Sbjct: 128 MRRQGV-VNVETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLCALCKSKN 186

Query: 130 IEDAEELLGEMVRNG-VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           +  A+E+  +M  NG   P A+TY+   + +    +     K+Y  M + G C P++ +Y
Sbjct: 187 VRKAQEIFEQM--NGRFSPDAKTYSILLEGWGRAPNLPKMRKVYSDMLDAG-CQPDIVTY 243

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
            I++       R++    +  D+   G  P    Y++L+H    + + ++A   F++M +
Sbjct: 244 GIMVDSLCKTGRVEEAVFVVQDMTSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMQK 303

Query: 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
            G++P  V +  L     +        R+   ++   IT  S   N
Sbjct: 304 DGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWN 349



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 87/169 (51%), Gaps = 17/169 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +L+  +CK+ + D A R + +M   G+ PN  T+N++LN +    SL   +      
Sbjct: 312 VYNALVTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWNIILNKLI---SLGKDD------ 362

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A +VF  M ++  +PD  ++++++ ++    + +++L    +M+ K   P++ T+S +
Sbjct: 363 -EAYRVFRRM-IKRCQPDSDTYTMMIKMFCENDRLEMALKVWKYMRLKQFLPSMHTFSVL 420

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY----NCFFKEYRGRKDA 165
           +  LC  G +  A  LL +M+  G+ P   T+        KE  GRKD 
Sbjct: 421 INGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKE--GRKDV 467


>gi|449442339|ref|XP_004138939.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Cucumis sativus]
          Length = 559

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  + +GWC++       R L EMIE G +P+  TYN  +   C+   L          +
Sbjct: 262 YNIMFFGWCRVRNPGRGMRVLEEMIELGFDPDNFTYNTAIASFCKAGML----------K 311

Query: 62  NAEKVFDEMRVRGI---EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A ++F+ MR +G     P   +++I++       + +     L +M + G  P V+TY 
Sbjct: 312 EACELFEFMRTKGSALSSPTAKTYAIMIVALVNNGRMEECFKFLEYMIKSGCLPDVSTYK 371

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            +++ +C  G++++A   L EM + G  P   TYNCF K     K ++ A++   +M E 
Sbjct: 372 EMIEGICVAGKVQEAYMFLEEMGKKGYPPDIVTYNCFLKVLCDNKMSDDALRHCDRMIEV 431

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G C+P++ +YN+LI MF  +N  +   +IW ++   G   D+DSY ++I GL    K  +
Sbjct: 432 G-CLPSVQTYNMLISMFFEMNDHNGAFQIWLEMDRYGCTRDVDSYCIMIEGLFGCNKVGD 490

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           AC    E++ KG+      F++    L  +  L+   RL + +
Sbjct: 491 ACLLLEEVVNKGMKLPFRKFDSFLMQLSVNGNLKGIHRLSEHM 533



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 80/207 (38%), Gaps = 40/207 (19%)

Query: 104 FMKEKGIC----PTVATYSSVVKCLCSCGRIEDAE------------------------- 134
           F K+K +     P +  ++ ++  LC C  +EDAE                         
Sbjct: 211 FAKKKKVIVKRQPEINAFNLLLDALCKCSLVEDAEALLKKVKKKLKPDANTYNIMFFGWC 270

Query: 135 ---------ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG--LCVP 183
                     +L EM+  G  P   TYN     +        A +L+  M+  G  L  P
Sbjct: 271 RVRNPGRGMRVLEEMIELGFDPDNFTYNTAIASFCKAGMLKEACELFEFMRTKGSALSSP 330

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
              +Y I+I   +   RM+   +    +  SG  PD+ +Y  +I G+C   K +EA  + 
Sbjct: 331 TAKTYAIMIVALVNNGRMEECFKFLEYMIKSGCLPDVSTYKEMIEGICVAGKVQEAYMFL 390

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDM 270
            EM +KG  P  VT+    + L  + M
Sbjct: 391 EEMGKKGYPPDIVTYNCFLKVLCDNKM 417


>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
 gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
 gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
          Length = 547

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 137/281 (48%), Gaps = 11/281 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GW     + M +    EMI+ G+ P+VV Y +L++  C+               
Sbjct: 269 YTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCD---------- 318

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KVF EM   G  P    + ++++      +   +L      K+ G    V T ++VV
Sbjct: 319 EAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDEALKYFEHYKKSGFPMEVPTCNAVV 378

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   + + A +++ EM +  V P++ TY+         +    A  ++++M  DG C
Sbjct: 379 GAYCRASKFQHAFKMVDEMRKCKVGPNSRTYDVILHYLIKSQKFEEAYNIFQRMGIDG-C 437

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P +++Y +++GMF +  R+DM  ++W  +   G+ P +  ++ LI+GLC + + +EAC 
Sbjct: 438 EPQLNTYTMMVGMFCSNGRVDMALKVWKQMGEKGVLPCMHMFSALINGLCFENRLEEACV 497

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           YF EM++KG+ P    F  L   L+Q   +   + +  KLD
Sbjct: 498 YFQEMLDKGIRPPGQLFSNLKEALVQGGRISLAQEVALKLD 538



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 127/260 (48%), Gaps = 22/260 (8%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG-IEPDVTSFSIVLH 87
           G++  +  YN L++ + +           K ++ A+ ++ EM+ +G   PD+ ++++++ 
Sbjct: 225 GLKTELSDYNWLIDTLSK----------SKQVKKAQAIYKEMKRKGKFVPDLKTYTVLME 274

Query: 88  VYSRAHQPQLSLDKLNF--MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
            +   H+  L + K  +  M + GI P V  Y  ++   C  G+ ++A ++  EM  +G 
Sbjct: 275 GW--GHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGC 332

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            PS   Y          +  + A+K +   K+ G  +  + + N ++G +   ++     
Sbjct: 333 MPSPHVYCMLINGLGSEERLDEALKYFEHYKKSGFPM-EVPTCNAVVGAYCRASKFQHAF 391

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           ++ ++++   +GP+  +Y +++H L + QK++EA   F  M   G  PQ  T+ T+  G+
Sbjct: 392 KMVDEMRKCKVGPNSRTYDVILHYLIKSQKFEEAYNIFQRMGIDGCEPQLNTY-TMMVGM 450

Query: 266 IQSD-----MLRTWRRLKKK 280
             S+      L+ W+++ +K
Sbjct: 451 FCSNGRVDMALKVWKQMGEK 470



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 1/195 (0%)

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
           R  G       F  ++    +  Q +L    +  M+ +G+  +  T+  +V+      ++
Sbjct: 153 RQEGFSYTAEGFHNLIEALGKIKQFRLVWSLVETMRCRGLL-SKDTFKLIVRRYARARKV 211

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           ++A E   +M   G+      YN         K    A  +Y++MK  G  VP++ +Y +
Sbjct: 212 KEAVETFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTV 271

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           L+  +     + MV+ ++ ++  +G+ PD+ +Y MLI   C+  K  EA + F EM   G
Sbjct: 272 LMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASG 331

Query: 251 LLPQKVTFETLYRGL 265
            +P    +  L  GL
Sbjct: 332 CMPSPHVYCMLINGL 346


>gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
          Length = 481

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 147/281 (52%), Gaps = 12/281 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ GW K   +  A     EMI+ G  P++VTY+++++ +C+             + 
Sbjct: 204 YSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGR----------VD 253

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M     +P    +S+++H Y   ++ + ++D    M+  G+   VA ++S++
Sbjct: 254 EALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLI 313

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R+++   +L EM   GV P++++ N   +    R + + A  ++R+M +  +C
Sbjct: 314 GAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIK--VC 371

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y ++I MF     M+   ++W  ++  G+ P + ++++LI+GLCE++  ++AC 
Sbjct: 372 EPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACV 431

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
              EMIE G+ P  VTF  L + LI+ +     + L +K++
Sbjct: 432 LLEEMIEMGIRPSGVTFGRLRQLLIKEEREDVLKFLNEKMN 472



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 130/293 (44%), Gaps = 50/293 (17%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           + +  ++D A      M +  + PN+V +N LL+ +C+           K +R A++VF+
Sbjct: 142 YARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCK----------SKNVRKAQEVFE 191

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNF--MKEKGICPTVATYSSVVKCLCS 126
            MR R   PD  ++SI+L  + +  +P L   +  F  M + G  P + TYS +V  LC 
Sbjct: 192 NMRDR-FTPDSKTYSILLEGWGK--EPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCK 248

Query: 127 CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH 186
            GR+++A  ++  M  +   P+   Y+     Y        A+  + +M+  G+   ++ 
Sbjct: 249 AGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGM-KADVA 307

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLG----------------------------- 217
            +N LIG F   NRM  V  +  ++K  G+                              
Sbjct: 308 VFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKM 367

Query: 218 -----PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
                PD D+YTM+I   CEK++ + A + +  M +KG+ P   TF  L  GL
Sbjct: 368 IKVCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGL 420



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 107/217 (49%), Gaps = 2/217 (0%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           +V +F IV+  Y+RA +   ++   N M++  + P +  ++ ++  LC    +  A+E+ 
Sbjct: 131 NVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVF 190

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
             M R+   P ++TY+   + +    +   A +++R+M + G C P++ +Y+I++ +   
Sbjct: 191 ENM-RDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAG-CHPDIVTYSIMVDILCK 248

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
             R+D    I   +  S   P    Y++L+H    + + +EA   F+EM   G+      
Sbjct: 249 AGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAV 308

Query: 258 FETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           F +L     +++ ++   R+ K++  + +T  S+  N
Sbjct: 309 FNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCN 345



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 11/152 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ SLI  +CK NR+    R L EM  +GV PN  + N++L         H  ER EK  
Sbjct: 308 VFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILR--------HLIERGEKD- 358

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  VF +M ++  EPD  ++++V+ ++    + + +     +M++KG+ P++ T+S +
Sbjct: 359 -EAFDVFRKM-IKVCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVL 416

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
           +  LC     + A  LL EM+  G+ PS  T+
Sbjct: 417 INGLCEERTTQKACVLLEEMIEMGIRPSGVTF 448


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 149/298 (50%), Gaps = 15/298 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFL--GEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           YT LI G+CK+ +  M E FL   +M+++ V PNVVTY  L +G+C++            
Sbjct: 428 YTVLIDGYCKVGK--MTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGD---------- 475

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +  A ++  EM  +G+E ++ +++ +++   +A   + ++  +  M E G+ P V TY++
Sbjct: 476 VCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTT 535

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC    ++ A  LL EM+  G+ P+  TYN     +       G  +L   M E  
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  PN  +YN L+  +     M    EI+  +    + P+ ++Y +LI G C+ +  KEA
Sbjct: 596 IH-PNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEA 654

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
             +  EMIEKG      ++  L R L +       RRL +K+ +E +T   +  N++ 
Sbjct: 655 LYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYI 712



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 139/287 (48%), Gaps = 12/287 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++T+++ G+C+   +  A  +  EM +RG+  + VTY  L+NG+CR   L          
Sbjct: 357 VFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGEL---------- 406

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + AE+V  EM  +G++ D  ++++++  Y +  +   +    N M +K + P V TY+++
Sbjct: 407 KEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTAL 466

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              LC  G +  A ELL EM   G+  +  TYN          +   AM+    M E GL
Sbjct: 467 SDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGL 526

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++++Y  +IG       +D    +  ++   G+ P + +Y +L++G C   + +   
Sbjct: 527 -KPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGK 585

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL-IQSDMLRTWRRLKKKLDEESI 286
           +    M+EK + P   T+ +L +   I+ +M  T    K  L +E +
Sbjct: 586 RLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVV 632



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 141/299 (47%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTS+I   C   ++  A R + +M+  GV  +   +  +++G CR+  L  +  +     
Sbjct: 323 YTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNW----- 377

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                FDEM+ RG+  D  +++ +++   RA + + +   L  M++KG+     TY+ ++
Sbjct: 378 -----FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLI 432

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++ +A  +  +MV+  V P+  TY         + D   A +L  +M   GL 
Sbjct: 433 DGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLE 492

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N+ +YN LI        ++       D+  +GL PD+ +YT +I  LC+ ++   A  
Sbjct: 493 L-NIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHS 551

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGSEFQNY 295
              EM++KG+ P  VT+  L  G   S  +   +R     L+K +   + T+ S  + Y
Sbjct: 552 LLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQY 610



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 118/251 (47%), Gaps = 18/251 (7%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           +D A +   E+ E+    N  +YN+LL  +C              I++A ++FDEM    
Sbjct: 238 LDEAVQLFQELPEK----NTCSYNILLKALCTAGR----------IKDAHQLFDEM---A 280

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
             PDV ++ I++H Y    + + ++  L+ M  +G+      Y+SV+  LC  G++ DA 
Sbjct: 281 SPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAV 340

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
            ++ +MV +GV   A  +      +  + D   A   + +M++ GL    + +Y  LI  
Sbjct: 341 RVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGV-TYTALING 399

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                 +     +  +++  GL  D  +YT+LI G C+  K  EA     +M++K + P 
Sbjct: 400 LCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPN 459

Query: 255 KVTFETLYRGL 265
            VT+  L  GL
Sbjct: 460 VVTYTALSDGL 470



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 99/231 (42%), Gaps = 17/231 (7%)

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           +R  GI P   S + VL         QL       + EK  C    +Y+ ++K LC+ GR
Sbjct: 217 LRQYGISPSPESCNAVLCRLPLDEAVQL----FQELPEKNTC----SYNILLKALCTAGR 268

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           I+DA +L  EM      P   TY      Y    +   A+KL  +M   GL + N  +Y 
Sbjct: 269 IKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLEL-NPVAYT 324

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            +I +     ++     +  D+   G+  D   +T ++ G C K     A  +F EM ++
Sbjct: 325 SVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKR 384

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           GL    VT+  L  GL ++  L+   R+      K LD +++T+      Y
Sbjct: 385 GLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGY 435


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 138/263 (52%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+ K   I+ A R   EMI RG++ NVVTYN ++ G+ +   +           
Sbjct: 349 YTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEM----------A 398

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F+EM + GIEPD  ++++++  Y ++H    + + L  MK + + P+  TYS ++
Sbjct: 399 KAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLI 458

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    ++ A E+L +M+RNGV P+   Y    K Y        A++L + M  +G+ 
Sbjct: 459 SGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGV- 517

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++  YN LI       +++  + +  D+   G+ P+  +Y   I+   +  + + A +
Sbjct: 518 LPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAER 577

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
           YF +M+  G++P  V +  L +G
Sbjct: 578 YFKDMLSSGIVPNNVIYTILIKG 600



 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 143/304 (47%), Gaps = 31/304 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G C+  +++ A+  L +M E+G++PN  TY   +N   +   +  +ER+ K + 
Sbjct: 524 YNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDML 583

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +                         A   F  M  +G+ PD+ ++S ++H  S+  + +
Sbjct: 584 SSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTK 643

Query: 97  LSLDK-LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
            ++   L F+K  G+ P V  Y+S++   C  G IE A +L  EM+ NG+ P+   YN  
Sbjct: 644 EAMGVFLKFLK-TGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTL 702

Query: 156 FKEYRGRKDAN--GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
             +Y   K  N   A KL+ +M   G+  P+ + Y ILI        ++    ++++ + 
Sbjct: 703 INDYGYCKSGNLTEAFKLFDEMISKGIS-PDGYIYCILIDGCGKEGNLEKALSLFHEAQQ 761

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT 273
             +G  L ++  LI   C+  K  EA + F +M++K L P  VT+  L     +++M+  
Sbjct: 762 KSVG-SLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEE 820

Query: 274 WRRL 277
             +L
Sbjct: 821 AEQL 824



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 137/296 (46%), Gaps = 13/296 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY +LI  + + +R +MA   L  MI  GV P++  YN L+ G+CR           K +
Sbjct: 488 MYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCR----------AKKV 537

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+ +  +M  +GI+P+  ++   +++YS++ + Q++      M   GI P    Y+ +
Sbjct: 538 EEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTIL 597

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +K  C  G   +A      M+  G+ P    Y+              AM ++ +  + G+
Sbjct: 598 IKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGV 657

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI--HGLCEKQKWKE 238
            VP++  YN LI  F     ++   ++++++  +G+ P++  Y  LI  +G C+     E
Sbjct: 658 -VPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTE 716

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           A + F EMI KG+ P    +  L  G  +   L     L  +  ++S+   S F +
Sbjct: 717 AFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNS 772



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 147/297 (49%), Gaps = 16/297 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLN--GVCRRASLHPSERFEK 58
           +Y SLI G+CK   I+ A +   EM+  G+ PN+V YN L+N  G C+  +L  +E F  
Sbjct: 663 LYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNL--TEAF-- 718

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
                 K+FDEM  +GI PD   + I++    +    + +L   +  ++K +  +++ ++
Sbjct: 719 ------KLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV-GSLSAFN 771

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           S++   C  G++ +A EL  +MV   + P+  TY      Y   +    A +L+  M+  
Sbjct: 772 SLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETR 831

Query: 179 GLCVPNMHSYNILIGMFMAL-NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            + +PN  +Y  L+  +  + NR  M+  ++ D++  G+  D  +Y ++    C++ K  
Sbjct: 832 NI-IPNTLTYTSLLLSYNQIGNRFKMI-SLFKDMEARGIACDAIAYGVMASAYCKEGKSL 889

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           EA +   + + +G+  +   F+ L   L +   + T   L  ++ +E ++  S+  N
Sbjct: 890 EALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCN 946



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 121/260 (46%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G C  + +  A   L +MI  GV+PNV  Y  L+    + +      R+E  I 
Sbjct: 454 YSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQES------RYEMAI- 506

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++   M   G+ PD+  ++ ++    RA + + +   L  M EKGI P   TY + +
Sbjct: 507 ---ELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFI 563

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G I+ AE    +M+ +G+ P+   Y    K +    +   A+  ++ M E GL 
Sbjct: 564 NLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGL- 622

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y+ +I       +      ++     +G+ PD+  Y  LI G C++   ++A Q
Sbjct: 623 IPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQ 682

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            + EM+  G+ P  V + TL
Sbjct: 683 LYDEMLHNGINPNIVVYNTL 702



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 127/266 (47%), Gaps = 12/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I   CK+  +   +  L EM E+  +PN+ TYN  + G+C+  ++  +   +K   
Sbjct: 245 YTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKL-- 301

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                   M  +G+ PD  ++++++  + +  + + +      M   G+ P   TY++++
Sbjct: 302 --------MMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALI 353

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G IE+A  +  EM+  G+  +  TYN          +   AM L+ +M   G+ 
Sbjct: 354 DGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGI- 412

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN+LI  ++  + M    E+  ++K   L P   +Y++LI GLC     ++A +
Sbjct: 413 EPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANE 472

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +MI  G+ P    + TL +  +Q
Sbjct: 473 VLDQMIRNGVKPNVFMYGTLIKAYVQ 498



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 120/269 (44%), Gaps = 12/269 (4%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +L+    K N + +  +  G M+E  + P+V TY  ++   C+             +   
Sbjct: 212 NLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGD----------VIKG 261

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
           + V  EM  +  +P++ +++  +    +      +L+    M EKG+ P   TY+ +V  
Sbjct: 262 KMVLSEME-KECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDG 320

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C   R ++A+ +   M  +G+ P+  TY      +    +   A+++  +M   GL + 
Sbjct: 321 FCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKL- 379

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N+ +YN +IG       M     ++N++  +G+ PD  +Y +LI G  +     +AC+  
Sbjct: 380 NVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELL 439

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
            EM  + L P   T+  L  GL  S  L+
Sbjct: 440 AEMKARKLTPSPFTYSVLISGLCHSSDLQ 468



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 8/183 (4%)

Query: 108 KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA-N 166
           +G  PT+   +++++ L     +    ++ G MV   + P   TY    K +    D   
Sbjct: 201 EGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIK 260

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
           G M L    KE   C PN+ +YN  IG       +D   E+   +   GLGPD  +YT+L
Sbjct: 261 GKMVLSEMEKE---CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLL 317

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           + G C++++ KEA   F  M   GL P + T+  L  G I+   +    R+K    +E I
Sbjct: 318 VDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIK----DEMI 373

Query: 287 TFG 289
           T G
Sbjct: 374 TRG 376



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 85/203 (41%), Gaps = 25/203 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF--EKT 59
           + SLI  +CK  ++  A     +M+++ + PN+VTY +L++   +   +  +E+   +  
Sbjct: 770 FNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDME 829

Query: 60  IRNAE-----------------------KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            RN                          +F +M  RGI  D  ++ ++   Y +  +  
Sbjct: 830 TRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSL 889

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L  LN    +GI      + +++  LC   +I    ELL EM +  +  S++T N   
Sbjct: 890 EALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLL 949

Query: 157 KEYRGRKDANGAMKLYRQMKEDG 179
             +    + + A K+   M+  G
Sbjct: 950 LGFYKSGNEDEASKVLGVMQRLG 972


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 133/268 (49%), Gaps = 17/268 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+++++G  K  ++  A     EM ++GV PNVVTYN +++ +C+           + +
Sbjct: 213 VYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCK----------ARAV 262

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+ +  +M   G++PD  +++ ++H YS   Q + ++     M  +G+ P   T S+ 
Sbjct: 263 DKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTF 322

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  LC  GRIE+A E    M+  G   +  +Y+     Y           L+  M  DG+
Sbjct: 323 VAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGI 382

Query: 181 CVPNMHSYNILIGMFMALNRMDMVRE---IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            VPN H +NIL+  +    +  MVRE   I+ D++  GL PD+ +Y  +IH  C      
Sbjct: 383 -VPNQHVFNILVNGYA---KCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMD 438

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +A   F  MI+KG+ P    ++ L +G 
Sbjct: 439 DAMDKFNHMIDKGVEPNFAVYQCLIQGF 466



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 136/287 (47%), Gaps = 13/287 (4%)

Query: 2   YTSLIYGWCKIN-RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y++L++G+      +DM+  F   M+  G+ PN   +N+L+NG  +             +
Sbjct: 354 YSTLLHGYATAGCLVDMSNLF-NLMVRDGIVPNQHVFNILVNGYAKCG----------MV 402

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R A  +F++M+ RG+ PDV ++  V+H + R      ++DK N M +KG+ P  A Y  +
Sbjct: 403 REAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCL 462

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C+ G +  AEEL+ E+   G+ P   ++               A +++  +   G 
Sbjct: 463 IQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGE 522

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              +++ +  LI  +  + +M     + + +   G+ PD+ +Y  L++G C+  +  +  
Sbjct: 523 -KADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGL 581

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             F E++ KG+ P   T+  +  GL  +      + + +++ E  I 
Sbjct: 582 ILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIA 628



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 131/308 (42%), Gaps = 47/308 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI   C+  R+D+A  F G ++ +G++ +V+  + LL G+C           ++T  
Sbjct: 106 YSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDA---------KRTDE 156

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNF----------------- 104
             + +F  M   G  PD  S+S VL       + Q +LD L                   
Sbjct: 157 AVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYST 216

Query: 105 --------------------MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
                               M ++G+ P V TY+SV+  LC    ++ A+ +L +MV NG
Sbjct: 217 VVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNG 276

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           V P   TYN     Y        A++++++M   G+ +PN  + +  +       R++  
Sbjct: 277 VQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGV-IPNTVTCSTFVAFLCKHGRIEEA 335

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           RE ++ +   G   ++ SY+ L+HG        +    F  M+  G++P +  F  L  G
Sbjct: 336 REFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNG 395

Query: 265 LIQSDMLR 272
             +  M+R
Sbjct: 396 YAKCGMVR 403



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 128/276 (46%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I+  CK   +D A+  L +M+  GV+P+ VTYN L++G                 +
Sbjct: 249 YNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQW----------K 298

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F EM  RG+ P+  + S  +    +  + + + +  + M  KG    + +YS+++
Sbjct: 299 QAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLL 358

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               + G + D   L   MVR+G+ P+   +N     Y        AM ++  M++ GL 
Sbjct: 359 HGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLN 418

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  +I  F  +  MD   + +N +   G+ P+   Y  LI G C      +A +
Sbjct: 419 -PDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEE 477

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
              E+  KGL P  ++F +L   L +   +   +R+
Sbjct: 478 LVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRI 513



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 141/347 (40%), Gaps = 61/347 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I+ +C++  +D A      MI++GVEPN   Y  L+ G C    L  +E     IR
Sbjct: 424 YLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIR 483

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           N                         A+++FD +   G + DV  F+ ++  Y    +  
Sbjct: 484 NKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMS 543

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    + M   GI P + TY ++V   C  GRI+D   L  E++  GV P+  TY    
Sbjct: 544 EAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIIL 603

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNIL-------------IGMFMALNRMDM 203
                      A +++++M E G+ V  + +Y+IL             I +F  L  M++
Sbjct: 604 DGLFHAGRTAAAKEMFQEMIESGIAV-TIPTYSILLTGLCRNNCTEEAITVFQKLCAMNV 662

Query: 204 VREI----------------------WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +I                      +  +   GL P + +YT+++  L ++   +EA  
Sbjct: 663 KFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEG 722

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
            F  M++ GL P       + R L++   +        ++D +SI F
Sbjct: 723 VFSVMLKSGLSPTSHFINVIVRTLLEKGEIVKAGIYMCRVDGKSILF 769



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 121/264 (45%), Gaps = 17/264 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++TSLI G+C I ++  A R    M+  G+EP++VTY  L+NG C+             I
Sbjct: 528 IFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGR----------I 577

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +   +F E+  +G++P   ++ I+L     A +   + +    M E GI  T+ TYS +
Sbjct: 578 DDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSIL 637

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY---RGRKDANGAMKLYRQMKE 177
           +  LC     E+A  +  ++    V       N    +    R R++A G   L+  + +
Sbjct: 638 LTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEG---LFASIPD 694

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            GL VP + +Y I++   +    ++    +++ +  SGL P      +++  L EK +  
Sbjct: 695 YGL-VPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEIV 753

Query: 238 EACQYFVEMIEKGLLPQKVTFETL 261
           +A  Y   +  K +L +  T   L
Sbjct: 754 KAGIYMCRVDGKSILFEASTASML 777



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 94/194 (48%), Gaps = 13/194 (6%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMK- 170
           PTV TYS ++ C C   R++ A    G ++R G+       +   +     K  + A+  
Sbjct: 101 PTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDV 160

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNR----MDMVREIWNDVKGSGLGPDLDSYTML 226
           L+ +M E G CVP+  SY+ ++       R    +D++R      +G G   ++  Y+ +
Sbjct: 161 LFHRMPELG-CVPDAISYSTVLKSVCDDGRSQWALDILRMAVK--QGGGCPCNVVVYSTV 217

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL----- 281
           +HGL ++ K  EAC  F EM ++G+ P  VT+ ++   L ++  +   + + +++     
Sbjct: 218 VHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGV 277

Query: 282 DEESITFGSEFQNY 295
             +++T+ +    Y
Sbjct: 278 QPDNVTYNTLIHGY 291



 Score = 41.2 bits (95), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 168 AMKLYRQMKEDG---LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
           A+ L+ +M       + +P +++Y+ILI       R+D+    +  +   G+  D+   +
Sbjct: 83  AVALFNRMSTGTGPRVALPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVS 142

Query: 225 MLIHGLCEKQKWKEACQ-YFVEMIEKGLLPQKVTFETLYRGL 265
            L+ GLC+ ++  EA    F  M E G +P  +++ T+ + +
Sbjct: 143 SLLRGLCDAKRTDEAVDVLFHRMPELGCVPDAISYSTVLKSV 184


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 149/285 (52%), Gaps = 12/285 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK  +++ AE  L EM  +GV+ N+V +N  ++G CRR  +  + R +    
Sbjct: 360 YGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAI-- 417

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                   M  +GI  DV +++I+ +   + H+   +   LN M EKG+ P V T++  +
Sbjct: 418 --------MEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFI 469

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G + +AE L  +M + G  P+  TYN     Y  ++    A K+  +M   GL 
Sbjct: 470 EIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGL- 528

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++++Y+ LI     + R+D   +++N+++  G+  ++ +YT +I GL ++ +  EA +
Sbjct: 529 LPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRADEAFK 588

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            + EM++ GL+P    F +L  G     +      ++K  D +S+
Sbjct: 589 LYDEMMKIGLIPDDRVFTSLV-GSFHKPLTHAGLDIQKASDSDSV 632



 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 133/265 (50%), Gaps = 11/265 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+S+I    ++  +  A     EM +R + PN  TY  L+ GVC+   +          
Sbjct: 324 VYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEA-------- 375

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE +  EM+ +G++ ++  F+  +  Y R  +   +L     M++KGI   V TY+ +
Sbjct: 376 --AEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNIL 433

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              LC   R ++A+ +L  MV  GV P+  T+  F + Y    +   A +L+R M++ G 
Sbjct: 434 ANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGE 493

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VPN+ +YN LI  +    ++    +I +++   GL PDL +Y+ LIHG C   +  EA 
Sbjct: 494 -VPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEAL 552

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
           + F EM  KG+     T+ ++  GL
Sbjct: 553 KLFNEMRLKGITRNVATYTSMISGL 577



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 144/305 (47%), Gaps = 27/305 (8%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEK--- 58
           T +I   C+   ++ A+  + EM+ +G V+PNV TYN LLN    R      +   K   
Sbjct: 220 TLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVDEILKLME 279

Query: 59  ----------------------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  I  AEK+F+EMR + IE DV  +S ++    R    +
Sbjct: 280 KEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMK 339

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    + M ++ I P   TY +++  +C  G++E AE LL EM   GV  +   +N   
Sbjct: 340 RAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTM 399

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y  R   + A++L   M++ G+   ++ +YNIL      L+R D  + I N +   G+
Sbjct: 400 DGYCRRGKMDEALRLQAIMEKKGIN-ADVFTYNILANGLCKLHRYDEAKCILNSMVEKGV 458

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P++ ++TM I   C++    EA + F +M +KG +P  +T+ TL     + + ++   +
Sbjct: 459 KPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHK 518

Query: 277 LKKKL 281
           +K ++
Sbjct: 519 IKSEM 523



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 121/229 (52%), Gaps = 15/229 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ + + G+C+  ++D A R    M ++G+  +V TYN+L NG+C+   LH   R+++  
Sbjct: 394 IFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCK---LH---RYDE-- 445

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+ + + M  +G++P+V +F++ + +Y +      +      M++KG  P + TY+++
Sbjct: 446 --AKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTL 503

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE--YRGRKDANGAMKLYRQMKED 178
           +   C   +++ A ++  EM+  G+ P   TY+         GR D   A+KL+ +M+  
Sbjct: 504 IDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDE--ALKLFNEMRLK 561

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           G+   N+ +Y  +I       R D   ++++++   GL PD   +T L+
Sbjct: 562 GI-TRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLV 609



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 115/268 (42%), Gaps = 42/268 (15%)

Query: 56  FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPT-V 114
           F++TIR    V+D +  +G+  +  S  ++L    R  +    +   + M E       V
Sbjct: 161 FDETIR----VYDYVEEKGLVIEERSCFVLLLALKRCGEVDFCVRFFHRMVESNKFEIRV 216

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYR 173
            + + V+  LC  G +E A+EL+ EMV  G+  P+  TYN     Y GRKD  G  ++ +
Sbjct: 217 QSLTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVDEILK 276

Query: 174 QMKEDGLCVPNMHSYNILIGMFMA-----------------------------------L 198
            M+++ + V ++ +Y+ILI  + +                                   L
Sbjct: 277 LMEKEQV-VFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRL 335

Query: 199 NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
             M     +++++    + P+  +Y  LI G+C+  + + A    +EM  KG+    V F
Sbjct: 336 GNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIF 395

Query: 259 ETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            T   G  +   +    RL+  ++++ I
Sbjct: 396 NTTMDGYCRRGKMDEALRLQAIMEKKGI 423


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 143/285 (50%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK+ +   A + L  +  + V+PNVV YN +++ +C+           K + 
Sbjct: 164 YGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKV----------KLVN 213

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++ EM  +GI PDV ++S ++  +    +   ++   N M  + I P V T+S +V
Sbjct: 214 EAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILV 273

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR+++A+ +L  M++ G+ P   TY      Y   K  N A  ++  M + G+ 
Sbjct: 274 DGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGV- 332

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+ SYNI+I  F  + ++D    ++ ++    + PD+ +Y  LI GLC+  K   A +
Sbjct: 333 TANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALK 392

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM ++G+   K+T+ ++   L ++  +     L  K+ +E I
Sbjct: 393 LVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGI 437



 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 145/288 (50%), Gaps = 11/288 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ L+ G+CK  R+  A+  L  M+++G++P+VVTY  L++G C            K + 
Sbjct: 269 FSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYC----------LVKQVN 318

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F+ M   G+  +V S++I+++ + +  +   +++    M  K I P V TY+S++
Sbjct: 319 KAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLI 378

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+I  A +L+ EM   GV     TYN            + A+ L  +MK++G+ 
Sbjct: 379 DGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGI- 437

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+M++Y ILI       R+   + I+ D+   G    + +YT++I G C+   + +A  
Sbjct: 438 QPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALA 497

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
              +M + G +P   T+E +   L + D      +L +++    + FG
Sbjct: 498 LLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGLLFG 545



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 149/318 (46%), Gaps = 44/318 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++I   CK+  ++ A     EM+ +G+ P+VVTY+ L++G C    L+         
Sbjct: 198 MYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLN--------- 248

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A  +F++M    I PDV +FSI++  + +  + + + + L  M ++GI P V TY S+
Sbjct: 249 -DAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSL 307

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK---- 176
           +   C   ++  A+ +   M + GV  + ++YN     +   K  + AM L+++M     
Sbjct: 308 MDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNI 367

Query: 177 ----------EDGLC-----------VPNMH---------SYNILIGMFMALNRMDMVRE 206
                      DGLC           V  MH         +YN ++      +++D    
Sbjct: 368 IPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIA 427

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +   +K  G+ PD+ +YT+LI GLC+  + K+A   F +++ KG      T+  + +G  
Sbjct: 428 LLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFC 487

Query: 267 QSDMLRTWRRLKKKLDEE 284
            +D+      L  K+++ 
Sbjct: 488 DNDLFDKALALLSKMEDN 505



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/319 (20%), Positives = 135/319 (42%), Gaps = 44/319 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI  + ++     +      ++++G EPN +T   L+ G+C +  +H +  F     
Sbjct: 94  FNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFH---- 149

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 D++   G   +   +  +++   +  Q   +L  L  +  K + P V  Y++++
Sbjct: 150 ------DKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTII 203

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
             +C    + +A +L  EMV  G+ P   TY+     +      N A+ L+ +M      
Sbjct: 204 DSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEIN 263

Query: 178 ----------DGLC--------------------VPNMHSYNILIGMFMALNRMDMVREI 207
                     DG C                     P++ +Y  L+  +  + +++  + I
Sbjct: 264 PDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSI 323

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           +N +   G+  ++ SY ++I+G C+ +K  EA   F EM  K ++P  VT+ +L  GL +
Sbjct: 324 FNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCK 383

Query: 268 SDMLRTWRRLKKKLDEESI 286
           S  +    +L  ++ +  +
Sbjct: 384 SGKISYALKLVDEMHDRGV 402



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 110/241 (45%), Gaps = 8/241 (3%)

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  +  EM   GI  D+ +F+I+++ +S+      S      + +KG  P   T +++
Sbjct: 73  QTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTL 132

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG- 179
           +K LC  G+I  A     ++V  G   +   Y             + A++L R++  DG 
Sbjct: 133 IKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRV--DGK 190

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           L  PN+  YN +I     +  ++   ++++++   G+ PD+ +Y+ LI G C   K  +A
Sbjct: 191 LVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDA 250

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGSEFQN 294
              F +MI + + P   TF  L  G  +   ++  +      +K+ +  + +T+ S    
Sbjct: 251 IGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDG 310

Query: 295 Y 295
           Y
Sbjct: 311 Y 311



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 83/162 (51%), Gaps = 10/162 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S++   CK +++D A   L +M + G++P++ TY +L++G+C+   L          +
Sbjct: 409 YNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRL----------K 458

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A+ +F+++ V+G    V ++++++  +        +L  L+ M++ G  P   TY  ++
Sbjct: 459 DAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIII 518

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163
             L      + AE+LL EM+  G+    +   C F  +  R+
Sbjct: 519 LSLFEKDENDMAEKLLREMIARGLLFGWKKAYCLFTRFFQRR 560


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 125/260 (48%), Gaps = 10/260 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI  +C +N I+ A     EM+E G  P+ + Y  L++G+ +   L           
Sbjct: 489 YTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLD---------- 538

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V  +M+  G  PD+ SF+++++ + R ++   + + L  M+  GI P   TY++++
Sbjct: 539 RASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLI 598

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G    A  L+ +MV+ G+ P+  TY      Y    + + AMK++R M      
Sbjct: 599 SHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKV 658

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN   YNILI      N++D+   + +D+K  G+ P+ +++  +  GL EK    +A +
Sbjct: 659 PPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFE 718

Query: 242 YFVEMIEKGLLPQKVTFETL 261
               M E    P  +T E L
Sbjct: 719 LMDRMTEHACNPDYITMEIL 738



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 145/310 (46%), Gaps = 27/310 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  LI G+CK + I+ A     +M + GV PNVVT N L++G+C+   ++ +  F     
Sbjct: 419 YNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQ 478

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  I  A ++FDEM   G  PD   +  ++   S+A +  
Sbjct: 479 GKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLD 538

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L+ MKE G  P + +++ ++   C   ++++A E+L EM   G+ P   TYN   
Sbjct: 539 RASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLI 598

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG-SG 215
             +    D + A +L ++M ++GL VP + +Y  LI  +     +D   +I+ D+   S 
Sbjct: 599 SHFSKTGDFSTAHRLMKKMVKEGL-VPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSK 657

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           + P+   Y +LI+ LC K +   A     +M  KG+ P   TF  +++GL + + L    
Sbjct: 658 VPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAF 717

Query: 276 RLKKKLDEES 285
            L  ++ E +
Sbjct: 718 ELMDRMTEHA 727



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 144/301 (47%), Gaps = 20/301 (6%)

Query: 5   LIYGWCKINRIDMAERFL-----GEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           LI   CK  R+D A         GE     VEP+V+TYN L++G+C+        R E+ 
Sbjct: 346 LINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVG------RQEEG 399

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +   E++  + R     P+  +++ ++  Y +A   + + +  + M + G+ P V T ++
Sbjct: 400 LGLVERMRSQPRCM---PNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNT 456

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +V  +C  GRI  A E   EM   G+  +A TY    + +    +   AM+L+ +M E G
Sbjct: 457 LVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAG 516

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C P+   Y  LI       ++D    + + +K +G  PD+ S+ +LI+G C K K  EA
Sbjct: 517 -CSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEA 575

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES-----ITFGSEFQN 294
            +   EM   G+ P  VT+ TL     ++    T  RL KK+ +E      +T+G+    
Sbjct: 576 YEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHA 635

Query: 295 Y 295
           Y
Sbjct: 636 Y 636



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 127/308 (41%), Gaps = 52/308 (16%)

Query: 21  FLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80
            + +  E  V PN +    L++ +CR           +T R  + +   M++ G+  +  
Sbjct: 257 LVSKFAEHEVFPNSIWLTQLISRLCRSG---------RTDRAWDVLHGLMKLGGVM-EAA 306

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           S + +L    RA + +     L  MKE  I P V T+  ++  LC   R+++A E+  +M
Sbjct: 307 SCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKM 366

Query: 141 -------------------VRNGVC----------------------PSAETYNCFFKEY 159
                              + +G+C                      P+  TYNC    Y
Sbjct: 367 NGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGY 426

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
                   A +L+ QM +DG+  PN+ + N L+       R++   E +N+++G GL  +
Sbjct: 427 CKASMIEAARELFDQMNKDGV-PPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGN 485

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
             +YT LI   C     ++A + F EM+E G  P  + + TL  GL Q+  L     +  
Sbjct: 486 AVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLS 545

Query: 280 KLDEESIT 287
           K+ E   +
Sbjct: 546 KMKEAGFS 553



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 11/128 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y +LI+ +C    +D A +   +M     V PN V YN+L+N +CR+            +
Sbjct: 629 YGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRK----------NQV 678

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + D+M+V+G++P+  +F+ +       +    + + ++ M E    P   T   +
Sbjct: 679 DLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEIL 738

Query: 121 VKCLCSCG 128
            + L + G
Sbjct: 739 TEWLSAVG 746


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 136/267 (50%), Gaps = 11/267 (4%)

Query: 20  RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDV 79
           + L EM ++G  P+++TYNV+LNG+C+          E  + +A +  + +   G EP+ 
Sbjct: 2   KLLDEMRDKGCAPDIITYNVVLNGICQ----------EGRVDDAMEFLENLPSYGGEPNT 51

Query: 80  TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
            S++IVL     A + + +   +  M  KG  P V T++ ++  LC  G +E A E+L +
Sbjct: 52  VSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQ 111

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
           + + G  P++ +YN     +  +K  + AM     M   G C P++ SYN L+       
Sbjct: 112 IPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRG-CYPDIVSYNTLLTALCRNG 170

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
            +D+  ++ + +KG G  P L SY  +I GL +  K KEA +   EMI KGL P  +T+ 
Sbjct: 171 EVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYT 230

Query: 260 TLYRGLIQSDMLRTWRRLKKKLDEESI 286
           T+  GL + D +    R   K+ +  I
Sbjct: 231 TIASGLCREDKIEEAIRTFCKVQDMGI 257



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 131/264 (49%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++ G C+  R+D A  FL  +   G EPN V+YN++L G      L  +ER+E    
Sbjct: 19  YNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKG------LFTAERWE---- 68

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AEK+ +EM  +G  P+V +F++++    R    + +++ L  + + G  P   +Y+ ++
Sbjct: 69  DAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLL 128

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   +++ A   +  MV  G  P   +YN          + + A+ L  Q+K  G C
Sbjct: 129 HAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKG-C 187

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + SYN +I       +     E+ +++   GL PD+ +YT +  GLC + K +EA +
Sbjct: 188 SPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIR 247

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F ++ + G+ P  V +  +  GL
Sbjct: 248 TFCKVQDMGIRPTVVLYNAILLGL 271



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 135/280 (48%), Gaps = 28/280 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  ++ G     R + AE+ + EM  +G  PNVVT+N+L++ +CRR  + P+        
Sbjct: 54  YNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIP 113

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +K +  A    + M  RG  PD+ S++ +L    R  +  
Sbjct: 114 KYGCTPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVD 173

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           +++D L+ +K KG  P + +Y++V+  L   G+ ++A ELL EM+  G+ P   TY    
Sbjct: 174 VAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIA 233

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN-ILIGMFMALNRMDMVREIWNDVKGSG 215
                      A++ + ++++ G+  P +  YN IL+G+       + + ++++ +  +G
Sbjct: 234 SGLCREDKIEEAIRTFCKVQDMGI-RPTVVLYNAILLGLCKRRETHNAI-DLFSYMISNG 291

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
             P+  +YT+L+ GL  +   KEA     ++  +G++ +K
Sbjct: 292 CMPNESTYTILVEGLAYEGLVKEARDLLGQLCSRGVVNKK 331


>gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g77360, mitochondrial; Flags: Precursor
 gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 147/281 (52%), Gaps = 12/281 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ GW K   +  A     EMI+ G  P++VTY+++++ +C+             + 
Sbjct: 240 YSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGR----------VD 289

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M     +P    +S+++H Y   ++ + ++D    M+  G+   VA ++S++
Sbjct: 290 EALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLI 349

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R+++   +L EM   GV P++++ N   +    R + + A  ++R+M +  +C
Sbjct: 350 GAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIK--VC 407

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y ++I MF     M+   ++W  ++  G+ P + ++++LI+GLCE++  ++AC 
Sbjct: 408 EPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACV 467

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
              EMIE G+ P  VTF  L + LI+ +     + L +K++
Sbjct: 468 LLEEMIEMGIRPSGVTFGRLRQLLIKEEREDVLKFLNEKMN 508



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 130/293 (44%), Gaps = 50/293 (17%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           + +  ++D A      M +  + PN+V +N LL+ +C+           K +R A++VF+
Sbjct: 178 YARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCK----------SKNVRKAQEVFE 227

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNF--MKEKGICPTVATYSSVVKCLCS 126
            MR R   PD  ++SI+L  + +  +P L   +  F  M + G  P + TYS +V  LC 
Sbjct: 228 NMRDR-FTPDSKTYSILLEGWGK--EPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCK 284

Query: 127 CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH 186
            GR+++A  ++  M  +   P+   Y+     Y        A+  + +M+  G+   ++ 
Sbjct: 285 AGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGM-KADVA 343

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLG----------------------------- 217
            +N LIG F   NRM  V  +  ++K  G+                              
Sbjct: 344 VFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKM 403

Query: 218 -----PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
                PD D+YTM+I   CEK++ + A + +  M +KG+ P   TF  L  GL
Sbjct: 404 IKVCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGL 456



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 106/214 (49%), Gaps = 2/214 (0%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           +V +F IV+  Y+RA +   ++   N M++  + P +  ++ ++  LC    +  A+E+ 
Sbjct: 167 NVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVF 226

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
             M R+   P ++TY+   + +    +   A +++R+M + G C P++ +Y+I++ +   
Sbjct: 227 ENM-RDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAG-CHPDIVTYSIMVDILCK 284

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
             R+D    I   +  S   P    Y++L+H    + + +EA   F+EM   G+      
Sbjct: 285 AGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAV 344

Query: 258 FETLYRGLIQSDMLRTWRRLKKKLDEESITFGSE 291
           F +L     +++ ++   R+ K++  + +T  S+
Sbjct: 345 FNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSK 378



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 11/152 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ SLI  +CK NR+    R L EM  +GV PN  + N++L         H  ER EK  
Sbjct: 344 VFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILR--------HLIERGEKD- 394

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  VF +M ++  EPD  ++++V+ ++    + + +     +M++KG+ P++ T+S +
Sbjct: 395 -EAFDVFRKM-IKVCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVL 452

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
           +  LC     + A  LL EM+  G+ PS  T+
Sbjct: 453 INGLCEERTTQKACVLLEEMIEMGIRPSGVTF 484


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 149/298 (50%), Gaps = 15/298 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFL--GEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           YT LI G+CK+ +  M E FL   +M+++ V PNVVTY  L +G+C++            
Sbjct: 428 YTVLIDGYCKVGK--MTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGD---------- 475

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +  A ++  EM  +G+E ++ +++ +++   +A   + ++  +  M E G+ P V TY++
Sbjct: 476 VCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTT 535

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC    ++ A  LL EM+  G+ P+  TYN     +       G  +L   M E  
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  PN  +YN L+  +     M    EI+  +    + P+ ++Y +LI G C+ +  KEA
Sbjct: 596 IH-PNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEA 654

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
             +  EMIEKG      ++  L R L +       RRL +K+ +E +T   +  N++ 
Sbjct: 655 LYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYI 712



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 139/287 (48%), Gaps = 12/287 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++T+++ G+C+   +  A  +  EM +RG+  + VTY  L+NG+CR   L          
Sbjct: 357 VFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGEL---------- 406

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + AE+V  EM  +G++ D  ++++++  Y +  +   +    N M +K + P V TY+++
Sbjct: 407 KEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTAL 466

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              LC  G +  A ELL EM   G+  +  TYN          +   AM+    M E GL
Sbjct: 467 SDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGL 526

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++++Y  +IG       +D    +  ++   G+ P + +Y +L++G C   + +   
Sbjct: 527 -KPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGK 585

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL-IQSDMLRTWRRLKKKLDEESI 286
           +    M+EK + P   T+ +L +   I+ +M  T    K  L +E +
Sbjct: 586 RLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVV 632



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 141/299 (47%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTS+I   C   ++  A R + +M+  GV  +   +  +++G CR+  L  +  +     
Sbjct: 323 YTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNW----- 377

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                FDEM+ RG+  D  +++ +++   RA + + +   L  M++KG+     TY+ ++
Sbjct: 378 -----FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLI 432

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++ +A  +  +MV+  V P+  TY         + D   A +L  +M   GL 
Sbjct: 433 DGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLE 492

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N+ +YN LI        ++       D+  +GL PD+ +YT +I  LC+ ++   A  
Sbjct: 493 L-NIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHS 551

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGSEFQNY 295
              EM++KG+ P  VT+  L  G   S  +   +R     L+K +   + T+ S  + Y
Sbjct: 552 LLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQY 610



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 118/251 (47%), Gaps = 18/251 (7%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           +D A +   E+ E+    N  +YN+LL  +C              I++A ++FDEM    
Sbjct: 238 LDEAVQLFQELPEK----NTCSYNILLKALCTAGR----------IKDAHQLFDEM---A 280

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
             PDV ++ I++H Y    + + ++  L+ M  +G+      Y+SV+  LC  G++ DA 
Sbjct: 281 SPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAV 340

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
            ++ +MV +GV   A  +      +  + D   A   + +M++ GL    + +Y  LI  
Sbjct: 341 RVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGV-TYTALING 399

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                 +     +  +++  GL  D  +YT+LI G C+  K  EA     +M++K + P 
Sbjct: 400 LCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPN 459

Query: 255 KVTFETLYRGL 265
            VT+  L  GL
Sbjct: 460 VVTYTALSDGL 470



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 99/231 (42%), Gaps = 17/231 (7%)

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           +R  GI P   S + VL         QL       + EK  C    +Y+ ++K LC+ GR
Sbjct: 217 LRQYGISPSPESCNAVLCRLPLDEAVQL----FQELPEKNTC----SYNILLKALCTAGR 268

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           I+DA +L  EM      P   TY      Y    +   A+KL  +M   GL + N  +Y 
Sbjct: 269 IKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLEL-NPVAYT 324

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            +I +     ++     +  D+   G+  D   +T ++ G C K     A  +F EM ++
Sbjct: 325 SVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKR 384

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           GL    VT+  L  GL ++  L+   R+      K LD +++T+      Y
Sbjct: 385 GLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGY 435


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 129/263 (49%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G CK  +++ A+ +L EMIERG++PNV TY  L++G C+   +  ++R+     
Sbjct: 519 YNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRY----- 573

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                F EM   GI P+    + ++  Y +      +      M  + + P V TYS+++
Sbjct: 574 -----FKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALI 628

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G+++ A ELL E +  G+ P   TYN     +  +     A +L+  M + G+ 
Sbjct: 629 HGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGIS 688

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN LI        ++  RE+++ + G GL  +  +Y  +I G C+     +A +
Sbjct: 689 -PNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFR 747

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F EM  KG+ P    +  L  G
Sbjct: 748 LFDEMTLKGVPPDSFVYSALIDG 770



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 129/263 (49%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+ +      A R   EM+ RGV+ N+ TYN L+ GVC+   +           
Sbjct: 344 YTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEK--------- 394

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ + +EM + GI+PD  +++ ++  Y +        D L+ MK+  + PT  T   ++
Sbjct: 395 -ADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMII 453

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G IEDA  +   MV  GV P+A  Y    K +        A+++ + M + G+ 
Sbjct: 454 NGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGV- 512

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YN +I       +M+  ++   ++   GL P++ +Y  LIHG C+  + + A +
Sbjct: 513 QPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADR 572

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
           YF EM+  G+ P  V    L  G
Sbjct: 573 YFKEMLGCGIAPNDVVCTALIDG 595



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 137/289 (47%), Gaps = 26/289 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           Y +L+ G CK   ++ A+  L EMI  G++P+  TYN ++ G  +               
Sbjct: 379 YNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMK 438

Query: 47  RASLHPSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +++L P+               +I +A +VF+ M   G++P+   ++ ++  + +  + Q
Sbjct: 439 KSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQ 498

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++  L  M +KG+ P V  Y+SV+  LC   ++E+A++ L EM+  G+ P+  TY    
Sbjct: 499 EAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALI 558

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y    +   A + +++M   G+  PN      LI  +           I+  + G  +
Sbjct: 559 HGYCKSGEMQVADRYFKEMLGCGI-APNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSV 617

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            PD+ +Y+ LIHGL    K + A +   E +EKGL+P   T+ ++  G 
Sbjct: 618 HPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGF 666



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 130/263 (49%), Gaps = 12/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI+G  +  ++  A   L E +E+G+ P+V TYN +++G C++            I 
Sbjct: 624 YSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGG----------IG 673

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ + M  +GI P++ +++ +++   +A + + + +  + +  KG+     TY++++
Sbjct: 674 KAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATII 733

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +  A  L  EM   GV P +  Y+      R   +   A+ L+ +  + G  
Sbjct: 734 DGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGF- 792

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  S N L+  F    ++    ++  D+    + PD  +YT+LI   C+    KEA Q
Sbjct: 793 -ASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQ 851

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
           +FV+M ++ L+P  +T+  L  G
Sbjct: 852 FFVDMQKRNLMPNALTYTALLSG 874



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 144/339 (42%), Gaps = 59/339 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI- 60
           YT LI    +       +R L EM E+G  P++VTYNV++ G+CR   +  +   +K + 
Sbjct: 239 YTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMD 298

Query: 61  ------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     A+ + +EM  +G++P   +++ ++  + R     
Sbjct: 299 KKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSG 358

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      M  +G+   + TY+++VK +C  G +E A+ LL EM+  G+ P  +TYN   
Sbjct: 359 EAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMI 418

Query: 157 KEYRGRKDANGAMKLYRQMKE--------------DGLC--------------------V 182
           + Y   ++ +    L  +MK+              +GLC                     
Sbjct: 419 EGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVK 478

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN   Y  LI   +   R      I   +   G+ PD+  Y  +I GLC+ +K +EA  Y
Sbjct: 479 PNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDY 538

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            VEMIE+GL P   T+  L  G  +S  ++   R  K++
Sbjct: 539 LVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEM 577



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 132/277 (47%), Gaps = 11/277 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+LI G  +  R   A R L  M ++GV+P+V+ YN ++ G+C+           + +
Sbjct: 483 IYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCK----------SRKM 532

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+    EM  RG++P+V ++  ++H Y ++ + Q++      M   GI P     +++
Sbjct: 533 EEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTAL 592

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G   +A  +   M+   V P   TY+             GAM+L  +  E GL
Sbjct: 593 IDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGL 652

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VP++ +YN +I  F     +    ++   +   G+ P++ +Y  LI+GLC+  + + A 
Sbjct: 653 -VPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERAR 711

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           + F  +  KGL    VT+ T+  G  +S  L    RL
Sbjct: 712 ELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRL 748



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 138/298 (46%), Gaps = 20/298 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSE-RFEKTIRNA 63
           +I G C+   I+ A R    M+  GV+PN V Y  L+ G       H  E RF++ +R  
Sbjct: 452 IINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKG-------HVQEGRFQEAVR-- 502

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             +   M  +G++PDV  ++ V+    ++ + + + D L  M E+G+ P V TY +++  
Sbjct: 503 --ILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHG 560

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV- 182
            C  G ++ A+    EM+  G+ P+          Y        A  ++R M   G  V 
Sbjct: 561 YCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCML--GRSVH 618

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ +Y+ LI   +   ++    E+ ++    GL PD+ +Y  +I G C++    +A Q 
Sbjct: 619 PDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQL 678

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
              M +KG+ P  +T+  L  GL ++  +   R L      K L   ++T+ +    Y
Sbjct: 679 HEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGY 736



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 140/312 (44%), Gaps = 27/312 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEK-- 58
           Y S+I G+CK   I  A +    M ++G+ PN++TYN L+NG+C+   +  + E F+   
Sbjct: 659 YNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIP 718

Query: 59  ----------------------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  +  A ++FDEM ++G+ PD   +S ++    +    +
Sbjct: 719 GKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTE 778

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L       +KG   T ++ ++++   C  G++ +A +LL +MV   V P   TY    
Sbjct: 779 KALSLFLESVQKGFAST-SSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILI 837

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +        A + +  M++  L +PN  +Y  L+  +    R   +  +++++    +
Sbjct: 838 DYHCKTGFLKEAEQFFVDMQKRNL-MPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDI 896

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD  +++++I    ++    +  +   +M++KG    K     L   L + + +    +
Sbjct: 897 EPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLK 956

Query: 277 LKKKLDEESITF 288
           + +K++E+ +  
Sbjct: 957 VLEKIEEQGLNL 968



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 120/283 (42%), Gaps = 14/283 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++  LI G+ K    D A  F       G    ++  N LL+ + +   L    RF    
Sbjct: 168 VFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRF---- 223

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                 ++ M    +  DV +++ +++ + RA   +     L  M+EKG  P++ TY+ V
Sbjct: 224 ------YNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVV 277

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G +++A EL   M + G+     TY+     +  +K    A  +  +M   GL
Sbjct: 278 IGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGL 337

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P   +Y  LI  FM          +  ++   G+  +L +Y  L+ G+C+    ++A 
Sbjct: 338 -KPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKAD 396

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
               EMI  G+ P   T+  +  G ++    +   R+K  L E
Sbjct: 397 ALLNEMIMVGIKPDTQTYNNMIEGYLKE---QNTSRVKDLLSE 436



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 45/215 (20%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            YT LI   CK   +  AE+F  +M +R + PN +TY  LL+G     +   SE F     
Sbjct: 833  YTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGY--NMAGRRSEMF----- 885

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVL--HVYSRAHQPQLSL-------------------- 99
                +FDEM  + IEPD  ++S+++  H+    H   L L                    
Sbjct: 886  ---ALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLI 942

Query: 100  -------------DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                           L  ++E+G+  ++AT S++V+C    G+++ A  +L  MVR    
Sbjct: 943  DPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWV 1002

Query: 147  PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            P +   N      +   D+  A    +QM  +  C
Sbjct: 1003 PDSTELNDLINVEQDSTDSENAGDFLKQMAWEVAC 1037



 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 47/244 (19%), Positives = 96/244 (39%), Gaps = 36/244 (14%)

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMK-EKGICPTVATYSSVVKCLCSCGRIEDA 133
           + PDV    I   V    + P+  LD  N+++ + G    + ++S +   LC+      A
Sbjct: 65  LSPDVVHSVITKQV----NDPKRLLDFFNWVQFQMGFSQKLQSFSILALILCNSRLFSRA 120

Query: 134 EELLGEMVRNGVCPSAETYNCFFKE------------------------------YRGRK 163
           + ++ +M+       +E  +   K                               Y+ + 
Sbjct: 121 DSVVNQMIMMSSGGYSEILDSLIKSCKEFDLNNVNGNENSNNNDRGVVFELLIDGYKKKG 180

Query: 164 DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSY 223
             + A+  +   K +G  V  +   N L+   +  N++++    +N +  + +  D+ +Y
Sbjct: 181 LFDEAVSFFLGAKRNGFVV-GLLCCNGLLSDLLKANKLELFWRFYNGMLEANVLHDVYTY 239

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           T LI+        KE  +   EM EKG  P  VT+  +  GL ++  +     LKK +D+
Sbjct: 240 THLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDK 299

Query: 284 ESIT 287
           + + 
Sbjct: 300 KGLV 303


>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial [Vitis vinifera]
          Length = 531

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 135/282 (47%), Gaps = 10/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GW +   +   +    EM + G EP+ VTY +L+N  C+      + R++  + 
Sbjct: 252 YTILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCK------ARRYDAAV- 304

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++F +M      P    +  +++      +   +L      K  G  P   TY++VV
Sbjct: 305 ---ELFHKMEANKCMPTPHIYCTLINGLGSERRLTEALQFFERSKASGFTPEAPTYNAVV 361

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R++DA  ++ EM + GV P   TY+         +    A ++++ M  +  C
Sbjct: 362 GSYCQSMRMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGC 421

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y I++ MF    R+DM   +W+++K  G+ P +  ++ LI+ LC + K  EAC+
Sbjct: 422 EPSVSTYEIVVRMFCNEERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDEACK 481

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           YF EM++ G+ P    F  L + L+          L +KLD+
Sbjct: 482 YFHEMLDMGIRPPAAMFSNLKQTLLDEGKQDMVLILAQKLDK 523



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 101/203 (49%), Gaps = 2/203 (0%)

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           + ++MR +G+    T F+++   Y+RA + + +++    M++ G+ P ++ ++ ++  LC
Sbjct: 167 LVNDMRSKGLLTQET-FALISRRYARARKVKEAVETFEKMEKFGLQPVLSDFNRLLDALC 225

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
               +E A+E+  +M      P  ++Y    + +   ++     ++YR+MK++G   P+ 
Sbjct: 226 KSRHVERAQEVFDKMKDRKFRPDIKSYTILLEGWGQEQNLLRLDEVYREMKDEGF-EPDA 284

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
            +Y ILI       R D   E+++ ++ +   P    Y  LI+GL  +++  EA Q+F  
Sbjct: 285 VTYGILINAHCKARRYDAAVELFHKMEANKCMPTPHIYCTLINGLGSERRLTEALQFFER 344

Query: 246 MIEKGLLPQKVTFETLYRGLIQS 268
               G  P+  T+  +     QS
Sbjct: 345 SKASGFTPEAPTYNAVVGSYCQS 367



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/283 (20%), Positives = 126/283 (44%), Gaps = 12/283 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI    KI +  M    + +M  +G+     T+ ++     R           + ++
Sbjct: 148 YNALIEALGKIKQFKMIWNLVNDMRSKGLLTQE-TFALISRRYAR----------ARKVK 196

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A + F++M   G++P ++ F+ +L    ++   + + +  + MK++   P + +Y+ ++
Sbjct: 197 EAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRPDIKSYTILL 256

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +       +   +E+  EM   G  P A TY      +   +  + A++L+ +M E   C
Sbjct: 257 EGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHKM-EANKC 315

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P  H Y  LI    +  R+    + +   K SG  P+  +Y  ++   C+  +  +A +
Sbjct: 316 MPTPHIYCTLINGLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYR 375

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
              EM + G+ PQ  T++ +   LI++   +   R+ + +  E
Sbjct: 376 IVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSE 418


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 137/268 (51%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L+   CK   +  A   +  MI+  ++P+VVTYN L++G C R+ +       KT+ 
Sbjct: 267 FNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEM------GKTV- 319

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               VFD M  +G  P V S++ +++ Y +      ++     M ++G+ P   TY++++
Sbjct: 320 ---NVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLI 376

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+ DA  L  EMV  G  P   TY   F           AM L + ++   L 
Sbjct: 377 HGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNL- 435

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++H Y+I++        ++  R++++ +   GL PD+ +YT++I+GLC++    EA +
Sbjct: 436 DPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASK 495

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            F EM E G  P   T+  + RG ++++
Sbjct: 496 LFGEMDENGCSPNACTYNLITRGFLRNN 523



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 11/261 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK+     A RFL  M +R   P VV Y+ +++ +C+          ++ + 
Sbjct: 162 YGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCK----------DRQLT 211

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F +M  +GI P+  ++S ++H        + ++     M  + I P   T++++V
Sbjct: 212 EALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLV 271

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +  A  ++  M+++ + P   TYN     +  R +    + ++  M   G C
Sbjct: 272 DALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKG-C 330

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++ SY  LI  +  +  MD    ++ ++   GL PD  +Y  LIHGLC   + ++A  
Sbjct: 331 VPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIA 390

Query: 242 YFVEMIEKGLLPQKVTFETLY 262
            F EM+  G +P  VT+  L+
Sbjct: 391 LFHEMVVYGQIPDLVTYRILF 411



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 134/283 (47%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI+G C +     A R    MI R + P+ +T+N L++ +C+          E  + 
Sbjct: 232 YSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCK----------EGMVV 281

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V D M    ++PDV +++ ++  +    +   +++  + M  KG  P+V +Y++++
Sbjct: 282 KAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLI 341

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    ++ A  L  EM + G+ P   TYN              A+ L+ +M   G  
Sbjct: 342 NGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQ- 400

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y IL       +R+     +   ++G+ L PD+  Y++++ G+C   + + A  
Sbjct: 401 IPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARD 460

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F ++  KGL P   T+  +  GL Q  +L    +L  ++DE 
Sbjct: 461 LFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDEN 503



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 124/271 (45%), Gaps = 11/271 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G C   +I  A +   +M   G +P+V+TY  L+NG+C+  +   + RF ++  
Sbjct: 127 FTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRS-- 184

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                   M  R   P V  +S ++    +  Q   +L   + M  KGI P   TYSS++
Sbjct: 185 --------MEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLI 236

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G  ++A  L   M+   + P   T+N              A  +   M +  L 
Sbjct: 237 HGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDL- 295

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN L+      + M     +++ +   G  P + SYT LI+G C+ Q   +A  
Sbjct: 296 KPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMG 355

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
            F EM ++GL+P  VT+ TL  GL     LR
Sbjct: 356 LFEEMSQQGLIPDTVTYNTLIHGLCHVGRLR 386



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 119/247 (48%), Gaps = 11/247 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+CKI  +D A     EM ++G+ P+ VTYN L++G+C    L          R
Sbjct: 337 YTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRL----------R 386

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +F EM V G  PD+ ++ I+     + H+   ++  L  ++   + P +  YS V+
Sbjct: 387 DAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVM 446

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G +E A +L  ++   G+ P   TY         +     A KL+ +M E+G C
Sbjct: 447 DGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENG-C 505

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +YN++   F+  N      +++ ++   G   D+ + T+L+  L +    +   Q
Sbjct: 506 SPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFSIDVSTTTLLVEMLSDDGLDQSVKQ 565

Query: 242 YFVEMIE 248
              E ++
Sbjct: 566 ILCEFVQ 572



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 122/261 (46%), Gaps = 11/261 (4%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
            +N ID A      M+     P++V ++ LL  + R           K       ++ +M
Sbjct: 31  NVNTIDDALSLFNRMLRMRPPPSIVDFSKLLTSITRM----------KHYSTVLSLYKQM 80

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
              GI  +  + +I+++ +   ++   +   L  + + G  P+ AT++++++ LC  G+I
Sbjct: 81  DSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKI 140

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
            +A +L  +M   G  P   TY           + + A++  R M++   C P +  Y+ 
Sbjct: 141 GEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRN-CRPTVVVYST 199

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           +I       ++     +++D+   G+ P+  +Y+ LIHGLC    WKEA + F  MI + 
Sbjct: 200 IIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRK 259

Query: 251 LLPQKVTFETLYRGLIQSDML 271
           ++P ++TF TL   L +  M+
Sbjct: 260 IMPDQLTFNTLVDALCKEGMV 280



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP-NMHSY 188
           I+DA  L   M+R    PS   ++         K  +  + LY+QM  D   +P N ++ 
Sbjct: 35  IDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQM--DSFGIPHNTYTL 92

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           NILI  F  LNR+     +  D+   G  P   ++T LI GLC + K  EA Q F +M  
Sbjct: 93  NILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTG 152

Query: 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           +G  P  +T+ TL  GL +     T  R  + +++ +
Sbjct: 153 EGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRN 189



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 71/142 (50%), Gaps = 10/142 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+ ++ G C+   ++ A     ++  +G+ P+V TY +++NG+C++  L          
Sbjct: 441 IYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLL---------- 490

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+F EM   G  P+  +++++   + R ++   ++     M  +G    V+T + +
Sbjct: 491 AEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFSIDVSTTTLL 550

Query: 121 VKCLCSCGRIEDAEELLGEMVR 142
           V+ L   G  +  +++L E V+
Sbjct: 551 VEMLSDDGLDQSVKQILCEFVQ 572


>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 719

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 140/285 (49%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI       ++     +  +M++ G+  NV +YN++++  C+ + +           
Sbjct: 430 YLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMD---------- 479

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A   F EM+ +GI P++ +F+ ++  Y +  +   S D L  + E G  P + T+SS++
Sbjct: 480 KATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSII 539

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   +IEDA     EMV  G+ P+A TYN          D   +MKL R+M+ DG+ 
Sbjct: 540 DGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGI- 598

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ S+N LI  F  + +++  +++++ +   GL PD  +Y   I   C+  ++ EA +
Sbjct: 599 NPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKE 658

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F+ M   G +P   T   +   L++ D     +++ K   E  I
Sbjct: 659 LFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKIAKTCSEWGI 703



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 121/251 (48%), Gaps = 11/251 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I  +CK + +D A     EM  +G+ PN+VT+N L++G C+             I 
Sbjct: 465 YNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGE----------IC 514

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            +  +   +   G +PD+ +FS ++    RA Q + +L   + M   G+ P   TY+ ++
Sbjct: 515 KSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILI 574

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +  + +LL +M  +G+ P   ++N   + +        A KL+  M   GL 
Sbjct: 575 HSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGL- 633

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+ ++Y   I +F    R +  +E++  ++ +G  PD  +  +++  L ++ +++ A +
Sbjct: 634 IPDNYTYVAFIKVFCQSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQK 693

Query: 242 YFVEMIEKGLL 252
                 E G+L
Sbjct: 694 IAKTCSEWGIL 704



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 151/359 (42%), Gaps = 66/359 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNG------------------ 43
           Y  LI+G C+   +D A R + +M   G  PNV TY +L++G                  
Sbjct: 255 YNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMK 314

Query: 44  --------VCRRASLH-------PSERFEKTI---------------------------R 61
                      R+ +H       P++ FE  I                           R
Sbjct: 315 ARKVSPSEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLLCCLSSKNMAR 374

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +    G +PD  +F+I ++   +        + L+   E+G+    +TY +++
Sbjct: 375 EAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALI 434

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K L   G++ +      +MV++G+  +  +YN     +      + A   +++M+  G+ 
Sbjct: 435 KALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGI- 493

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ ++N LI  +     +   R++   +   G  PD+ +++ +I GLC  ++ ++A  
Sbjct: 494 PPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALG 553

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL-IQSDMLRTWRRLKK----KLDEESITFGSEFQNY 295
            F EM+  GL P  VT+  L   L I  D+ R+ + L+K     ++ +  +F +  Q++
Sbjct: 554 CFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSF 612



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 10/181 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++S+I G C+  +I+ A     EM+  G+ PN VTYN+L++ +C              + 
Sbjct: 535 FSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGD----------VP 584

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            + K+  +M+  GI PDV SF+ ++  + R  + + +    + M   G+ P   TY + +
Sbjct: 585 RSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFI 644

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C  GR  +A+EL   M  NG  P + T N        +     A K+ +   E G+ 
Sbjct: 645 KVFCQSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKIAKTCSEWGIL 704

Query: 182 V 182
           V
Sbjct: 705 V 705



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 126/328 (38%), Gaps = 61/328 (18%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF---- 56
           +Y ++I    K N +D+A     +M     +P+  TYN+L++GVCR   +  + R     
Sbjct: 219 LYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQM 278

Query: 57  ---------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                 K +  A +V + M+ R + P   +    +H   R   P
Sbjct: 279 EGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSEATIRSFIHGVFRCVAP 338

Query: 96  ------------------QLSLDKL-------NFMKEKGIC----------PTVATYSSV 120
                             +L+ D L       N  +E G            P  AT++  
Sbjct: 339 NKAFELAIEFIEREPVLQRLACDTLLCCLSSKNMAREAGALLKKFGKIGHKPDSATFNIA 398

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           + CL     + +   +L   V  G+     TY    K              + QM +DGL
Sbjct: 399 MNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGL 458

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            + N+ SYN++I  F   + MD     + +++  G+ P+L ++  LI G C+  +  ++ 
Sbjct: 459 -LCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSR 517

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
              V ++E G  P   TF ++  GL ++
Sbjct: 518 DLLVMLLEHGFKPDIFTFSSIIDGLCRA 545



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 1/140 (0%)

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
           G  +  +E+ G++   G+ PS   YN            + A   ++QM  D  C P+  +
Sbjct: 196 GLAKYCDEIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADN-CKPDRFT 254

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           YNILI        +D    +   ++G G  P++ +YT+LI G    +K  EA +    M 
Sbjct: 255 YNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMK 314

Query: 248 EKGLLPQKVTFETLYRGLIQ 267
            + + P + T  +   G+ +
Sbjct: 315 ARKVSPSEATIRSFIHGVFR 334



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 1/173 (0%)

Query: 109 GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGA 168
           GI P+   Y++V+  L     ++ A     +M  +   P   TYN            + A
Sbjct: 212 GISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEA 271

Query: 169 MKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228
           ++L +QM+  G   PN+ +Y ILI  F    ++D    +   +K   + P   +    IH
Sbjct: 272 LRLVKQMEGLGYS-PNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSEATIRSFIH 330

Query: 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           G+       +A +  +E IE+  + Q++  +TL   L   +M R    L KK 
Sbjct: 331 GVFRCVAPNKAFELAIEFIEREPVLQRLACDTLLCCLSSKNMAREAGALLKKF 383



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 110/267 (41%), Gaps = 21/267 (7%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  W ++      +   G++   G+ P+   YN +++ + +  SL            A 
Sbjct: 188 LIGSWGRLGLAKYCDEIFGQISFLGISPSTRLYNAVIDALVKSNSLDL----------AY 237

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
             F +M     +PD  +++I++H   R+     +L  +  M+  G  P V TY+ ++   
Sbjct: 238 LKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGF 297

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
            +  ++++A  +L  M    V PS  T   F          N A +L  +  E    +  
Sbjct: 298 FNAKKVDEAFRVLETMKARKVSPSEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQR 357

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSG-LG--PDLDSYTMLIHGLCEKQKWKEACQ 241
           +    +L      L+  +M RE    +K  G +G  PD  ++ + ++ L +     E C 
Sbjct: 358 LACDTLLC----CLSSKNMAREAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCN 413

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
                +E+G+   K  F T Y  LI++
Sbjct: 414 ILDRFVEQGM---KFGFST-YLALIKA 436



 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+   YN +I   +  N +D+    +  +      PD  +Y +LIHG+C      EA + 
Sbjct: 215 PSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRL 274

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
             +M   G  P   T+  L  G   +          KK+DE
Sbjct: 275 VKQMEGLGYSPNVFTYTILIDGFFNA----------KKVDE 305



 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 10/117 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI  +C++ +++ A++    M+  G+ P+  TY   +   C+      S RF +   
Sbjct: 605 FNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQ------SGRFNE--- 655

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A+++F  M   G  PD  + +I+L    +  Q + +        E GI    A  S
Sbjct: 656 -AKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKIAKTCSEWGILVNFAAIS 711


>gi|302798519|ref|XP_002981019.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
 gi|300151073|gb|EFJ17720.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
          Length = 448

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 141/301 (46%), Gaps = 12/301 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI   CK NR D A +    M+E+ + PNV  Y  LL   CR           + + 
Sbjct: 152 YTALISVLCKHNRADDAMKVFDIMVEKEIVPNVDVYTSLLAAHCR----------TRKLD 201

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F EM  RG  P  +++ ++L       +  L+ D  + M+ +G  P   TY+S++
Sbjct: 202 GAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLI 261

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCP-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              C  GRI +A+ L  E++        A  YN   +          A+++   M + G 
Sbjct: 262 YGCCMAGRITEAKVLFKEVLEGEKAQLDAGIYNVLIEGLCRASKVEEALEVTAGMVDKG- 320

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C+P + +YN LI  F   N +D   +++  ++  G  P+   Y+  I GLC+  K  EA 
Sbjct: 321 CIPTLQTYNALIMGFFKANEVDKALQLFRAMEEKGFSPNTMIYSTFIDGLCKVGKINEAH 380

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
           ++F + +E+G +P  VT+  L RGL  ++ +    RL +++ E         +   F+  
Sbjct: 381 EFFQQSVERGCVPDNVTYNALIRGLFGANRMDEAHRLYREMGERGYIADRSLRTLAFQRS 440

Query: 301 R 301
           R
Sbjct: 441 R 441



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 132/288 (45%), Gaps = 15/288 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++         D   +F    +  G  P+V+ Y  +L+ + +              R
Sbjct: 83  YNAILKALMCSGDFDGGFKFSDIAVGDGSLPHVLAYKTMLDCLIKTGK----------TR 132

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V  EM  + + PD  +++ ++ V  + ++   ++   + M EK I P V  Y+S++
Sbjct: 133 EASEVVGEMIKKSV-PDGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVPNVDVYTSLL 191

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   +++ A  L  EM++ G  PSA TY    +       +  A  ++  M+  G  
Sbjct: 192 AAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRSRGH- 250

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIWNDV-KGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           VP+ ++Y  LI G  MA  R+   + ++ +V +G     D   Y +LI GLC   K +EA
Sbjct: 251 VPDENTYASLIYGCCMA-GRITEAKVLFKEVLEGEKAQLDAGIYNVLIEGLCRASKVEEA 309

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            +    M++KG +P   T+  L  G  +++ +    +L + ++E+  +
Sbjct: 310 LEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRAMEEKGFS 357



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 107/264 (40%), Gaps = 47/264 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+ G  K++ +D A   L  M+  G +P+VVT  +L++  C            K + 
Sbjct: 13  YNLLVRGLTKLSSVDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEM----------KRVG 62

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++F E+   G+   + +++ +L     +          +     G  P V  Y +++
Sbjct: 63  EVCELFQELESNGVAVGMLAYNAILKALMCSGDFDGGFKFSDIAVGDGSLPHVLAYKTML 122

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CL   G+  +A E++GEM++  V                                    
Sbjct: 123 DCLIKTGKTREASEVVGEMIKKSV------------------------------------ 146

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y  LI +    NR D   ++++ +    + P++D YT L+   C  +K   A +
Sbjct: 147 -PDGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVPNVDVYTSLLAAHCRTRKLDGAYR 205

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            FVEMI++G  P   T+  L R L
Sbjct: 206 LFVEMIQRGYGPSASTYGLLLRCL 229



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M EDG+ VP+  SYN+L+     L+ +D  R + + + G G  PD+ +  +L+   CE +
Sbjct: 1   MLEDGV-VPDRDSYNLLVRGLTKLSSVDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMK 59

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           +  E C+ F E+   G+    + +  + + L+ S
Sbjct: 60  RVGEVCELFQELESNGVAVGMLAYNAILKALMCS 93


>gi|259490380|ref|NP_001159198.1| uncharacterized protein LOC100304284 [Zea mays]
 gi|223942589|gb|ACN25378.1| unknown [Zea mays]
 gi|414865313|tpg|DAA43870.1| TPA: hypothetical protein ZEAMMB73_208601 [Zea mays]
          Length = 519

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 145/288 (50%), Gaps = 18/288 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ GW      + AE F+ EM E GVEP++VTYN L++  C+           + ++
Sbjct: 218 FNILLSGW---KSAEDAEAFVTEMRELGVEPDLVTYNSLIDCHCK----------NRDVQ 264

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ DEMR + I PD+ +++ ++       QP  + D L  M E G  P V  Y++ +
Sbjct: 265 KAYKLLDEMRHKDISPDIITYTSLIGGLGLIGQPDKAKDLLKEMYELGCYPDVPAYNAAI 324

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +      R+ DA  L+ +MV  G+ P+  TYN FF+ Y    D   A +LY +M+ +G C
Sbjct: 325 RNFVIAKRLGDAFALMDQMVSKGLMPNPTTYNLFFRCYYWAFDIGSAWRLYERMRSEG-C 383

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  S   +I +     ++ +  E+W+D+  S  G       +L+  LC++ K ++A +
Sbjct: 384 YPNTQSCMFIIRLCHRYGKVALALELWSDMVSSSFGSLTLVSDVLLDLLCDEGKLEDAER 443

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
            F +M+E G  P  V F  + + L+Q   L        +L E+ I FG
Sbjct: 444 CFCQMVELGQKPSNVAFRRI-KILMQ---LAKQEESIARLTEKMIQFG 487


>gi|449505615|ref|XP_004162522.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g73400, mitochondrial-like [Cucumis sativus]
          Length = 559

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  + +GWC++       R L EMIE G +P+  TYN  +   C+   L          +
Sbjct: 262 YNIMXFGWCRVRNPGRGMRVLEEMIELGFDPDNFTYNTAIASFCKAGML----------K 311

Query: 62  NAEKVFDEMRVRGI---EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A ++F+ MR +G     P   +++I++       + +     L +M + G  P V+TY 
Sbjct: 312 EACELFEFMRTKGSALSSPTAKTYAIMIVALVNNGRMEECFKFLEYMIKSGCLPDVSTYK 371

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            +++ +C  G++++A   L EM + G  P   TYNCF K     K ++ A++   +M E 
Sbjct: 372 EMIEGICVAGKVQEAYMFLEEMGKKGYPPDIVTYNCFLKVLCDNKMSDDALRHCDRMIEV 431

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G C+P++ +YN+LI MF  +N  +   +IW ++   G   D+DSY ++I GL    K  +
Sbjct: 432 G-CLPSVQTYNMLISMFFEMNDHNGAFQIWLEMDRYGCTRDVDSYCIMIEGLFGCNKVGD 490

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           AC    E++ KG+      F++    L  +  L+   RL + +
Sbjct: 491 ACLLLEEVVNKGMKLPFRKFDSFLMQLSVNGNLKGIHRLSEHM 533



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 80/207 (38%), Gaps = 40/207 (19%)

Query: 104 FMKEKGIC----PTVATYSSVVKCLCSCGRIEDAE------------------------- 134
           F K+K +     P +  ++ ++  LC C  +EDAE                         
Sbjct: 211 FAKKKKVIVKRQPEINAFNLLLDALCKCSLVEDAEALLKKVKKKLKPDANTYNIMXFGWC 270

Query: 135 ---------ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG--LCVP 183
                     +L EM+  G  P   TYN     +        A +L+  M+  G  L  P
Sbjct: 271 RVRNPGRGMRVLEEMIELGFDPDNFTYNTAIASFCKAGMLKEACELFEFMRTKGSALSSP 330

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
              +Y I+I   +   RM+   +    +  SG  PD+ +Y  +I G+C   K +EA  + 
Sbjct: 331 TAKTYAIMIVALVNNGRMEECFKFLEYMIKSGCLPDVSTYKEMIEGICVAGKVQEAYMFL 390

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDM 270
            EM +KG  P  VT+    + L  + M
Sbjct: 391 EEMGKKGYPPDIVTYNCFLKVLCDNKM 417


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 140/276 (50%), Gaps = 8/276 (2%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +   I G C+  +++ AE  + +M   G+ PNVVTYN L++G C+R S          + 
Sbjct: 203 FNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGS-------AGKMY 255

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE    EM    I P+  +F+ ++  + +      +      M+++G+ P + TY+S++
Sbjct: 256 KAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLI 315

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+ G++E+A +L  +MV  G+ P+  TYN     +  +K    A K++  + +  L 
Sbjct: 316 NGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQEL- 374

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN+ ++N +I  +     M+    + + +   G+ P++ +Y  LI GLC KQ  + A +
Sbjct: 375 VPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKE 434

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
              EM  KGL    VT+  L  GL ++D  R   +L
Sbjct: 435 LLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKL 470



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 131/260 (50%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G C   +++ A     +M+  G++PN+VTYN L+NG C++          K ++
Sbjct: 311 YNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKK----------KMMK 360

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KVFD++  + + P+V +F+ ++  Y +    +      + M ++GI P V+TY+ ++
Sbjct: 361 EATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLI 420

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    ++ A+ELL EM   G+     TYN           +  A KL  +M   GL 
Sbjct: 421 AGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGL- 479

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +YN L+  +    ++     +   ++     P++ +Y +LI G C+  K + A  
Sbjct: 480 KPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANG 539

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              EM+EKGL P + T++ +
Sbjct: 540 LLNEMLEKGLNPNRTTYDIV 559



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 124/233 (53%), Gaps = 4/233 (1%)

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           E  I + E V+ EM  R I  ++ +F+I ++   RA +   + D +  MK  GI P V T
Sbjct: 178 ENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVT 237

Query: 117 YSSVVKCLC---SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           Y+++V   C   S G++  AE  + EM+ N +CP+  T+N     +   ++   A K + 
Sbjct: 238 YNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFE 297

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           +M++ GL  PN+ +YN LI       +++   ++W+ + G GL P++ +Y  LI+G C+K
Sbjct: 298 EMQKQGL-KPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKK 356

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +  KEA + F ++ ++ L+P  +TF T+     +  M+     L   + +E I
Sbjct: 357 KMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGI 409



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 143/286 (50%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G+CK   +  A++   EM ++G++PN+VTYN L+NG+C    L           
Sbjct: 276 FNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEE--------- 326

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++D+M   G++P++ +++ +++ + +    + +    + + ++ + P V T+++++
Sbjct: 327 -AIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMI 385

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +E+   L   M+  G+ P+  TYNC       ++D   A +L  +M+  GL 
Sbjct: 386 DAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGL- 444

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++ +YNILI      ++     ++ N++   GL P+  +Y  L+ G C + K K A  
Sbjct: 445 KGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALN 504

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
               M ++   P  VT+  L +G  + + L     L  ++ E+ + 
Sbjct: 505 VRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLN 550



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 133/285 (46%), Gaps = 14/285 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+    K N+I   E    EMI+R +  N+ T+N+ +NG+CR   L+           AE
Sbjct: 171 LLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNK----------AE 220

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE---KGICPTVATYSSVV 121
              ++M+  GI P+V +++ ++  Y +            FMKE     ICP   T+++++
Sbjct: 221 DAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLI 280

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    +  A++   EM + G+ P+  TYN              A+ L+ +M   GL 
Sbjct: 281 DGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGL- 339

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN LI  F     M    ++++DV    L P++ ++  +I   C++   +E   
Sbjct: 340 KPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFS 399

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
               M+++G+LP   T+  L  GL +   L+  + L  +++ + +
Sbjct: 400 LCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGL 444



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 113/275 (41%), Gaps = 46/275 (16%)

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL--SLDKLNFMKEKGICPTVATYSSVVKC 123
           VF  + + G  P  T+  I + V +     +L  + +     K+ G   ++ + + ++  
Sbjct: 115 VFHSLLLDGGRPGATALIIDMLVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSA 174

Query: 124 LCSCGRIEDAEELLGEMVR--------------NGVC---------------------PS 148
           L    +I D E +  EM++              NG+C                     P+
Sbjct: 175 LVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPN 234

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKE---DGLCVPNMHSYNILIGMFMALNRMDMVR 205
             TYN     Y  R  A    K    MKE   + +C PN  ++N LI  F     +   +
Sbjct: 235 VVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKIC-PNEVTFNTLIDGFCKDENVAAAK 293

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           + + +++  GL P++ +Y  LI+GLC   K +EA   + +M+  GL P  VT+  L  G 
Sbjct: 294 KAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGF 353

Query: 266 IQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
            +  M++   ++     K++L    ITF +    Y
Sbjct: 354 CKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAY 388


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 137/266 (51%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+   CK+  +  A    G MI+RG+EP+VV+ N L+NG C R  +           
Sbjct: 270 FNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCM----------S 319

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A++VFD M  RG  P+V S+S +++ Y +      +L  L  M ++ + P   TY+ ++
Sbjct: 320 EAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLL 379

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+    +L+  M  +G  P   TYN    +Y  R+  + A+ L++ + + G+ 
Sbjct: 380 DGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGIS 439

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YNILI       RM   +EI+  +   G  P++ +Y ++I+GL  +    EA  
Sbjct: 440 -PNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEA 498

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
             +EM++ G  P  VTF+ L R L++
Sbjct: 499 LLLEMVDDGFPPNAVTFDPLVRALLE 524



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 135/285 (47%), Gaps = 14/285 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
            I     + ++ +A   + ++++RG   +  T   L+ G+C +        FE     A 
Sbjct: 97  FINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKG-----RTFE-----AL 146

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            ++D    +G   D   +  +++   +  + + +++ L  M++ G+ P +  Y+ VV  L
Sbjct: 147 NLYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGL 206

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ--MKEDGLCV 182
           C  G + +A  L  EMV  G+C    TYN     + G     GA++L  +  MKED    
Sbjct: 207 CKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKED--VR 264

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+++++NIL+     L  +   R ++  +   GL PD+ S   L++G C +    EA + 
Sbjct: 265 PDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEV 324

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           F  M+E+G LP  +++ TL  G  +  M+    RL  ++ + ++ 
Sbjct: 325 FDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLV 369



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 137/288 (47%), Gaps = 14/288 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK+ +   A   L +M + GV PN++ YN++++G+C+          E  + 
Sbjct: 164 YGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCK----------EGLVT 213

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN--FMKEKGICPTVATYSS 119
            A  +  EM  +GI  DV +++ ++H +  A Q Q ++  LN   MKE  + P V T++ 
Sbjct: 214 EACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKED-VRPDVYTFNI 272

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +V  LC  G + +A  + G M++ G+ P   + N     +  R   + A +++ +M E G
Sbjct: 273 LVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERG 332

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
             +PN+ SY+ LI  +  +  +D    +  ++    L PD  +Y  L+ GL +  +    
Sbjct: 333 K-LPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYE 391

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
                 M   G  P  +T+  L    ++ + L     L + + +  I+
Sbjct: 392 WDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGIS 439



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 123/267 (46%), Gaps = 12/267 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T+L+ G C   R   A       + +G   + V Y  L+NG+C+              R+
Sbjct: 130 TTLMKGLCLKGRTFEALNLYDHAVSKGFSFDEVCYGTLINGLCKMGK----------TRD 179

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A ++  +M   G+ P++  +++V+    +      +    + M  KGIC  V TY+S++ 
Sbjct: 180 AIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIH 239

Query: 123 CLCSCGRIEDAEELLGEMV-RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             C  G+ + A  LL EMV +  V P   T+N              A  ++  M + GL 
Sbjct: 240 GFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGL- 298

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ S N L+  +     M   +E+++ +   G  P++ SY+ LI+G C+ +   EA +
Sbjct: 299 EPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALR 358

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
              EM ++ L+P  VT+  L  GL +S
Sbjct: 359 LLTEMHQRNLVPDTVTYNCLLDGLSKS 385



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 61/156 (39%)

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           +DA      M+     PS  + N         K     + L   +   G   P++ + +I
Sbjct: 37  DDAVSTFHRMLHLHPPPSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSLVTLSI 96

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
            I     L +M +   +   +   G G D  + T L+ GLC K +  EA   +   + KG
Sbjct: 97  FINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHAVSKG 156

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
               +V + TL  GL +    R    L +K+++  +
Sbjct: 157 FSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGV 192


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 138/272 (50%), Gaps = 17/272 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+      R D AE  + E+ E+G+ P+ +TYN+L+NG CR A             
Sbjct: 364 YNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCA------------- 410

Query: 62  NAEKVF---DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           NA+K F   DEM   GI+P   +++ +LHV S+ ++ + + D    +  +G+ P    ++
Sbjct: 411 NAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFN 470

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++   CS   ++ A ELL +M R  V P   T+N   + +        A +L+ +MK  
Sbjct: 471 ALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRR 530

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P+  S+N LI  +     +     + N++  +G  P + +Y  L+ GLC+ Q+   
Sbjct: 531 GI-KPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDL 589

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           A +   EM+ KG+ P   T+ TL  G+ + ++
Sbjct: 590 AEELLKEMVSKGMTPDDTTYFTLIEGIAKVNI 621



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 141/283 (49%), Gaps = 11/283 (3%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           SL+  + K+NR + A     EM    ++ +V T+N+++N +C+          E  ++ A
Sbjct: 191 SLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCK----------EGKLKKA 240

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
           +     M   G++P++ +++ ++H Y  + + + +   L  MK + I P   TY S++  
Sbjct: 241 KDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISG 300

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           +C  GR+E+A ++  EMV+ G+ PSA  YN     +  + + + A     +M + G+  P
Sbjct: 301 MCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGIS-P 359

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
            M +YN LI       R D    +  +++  G+ PD  +Y +LI+G C     K+A    
Sbjct: 360 TMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLH 419

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            EM+  G+ P K T+ +L   L + + ++    L KK+  E +
Sbjct: 420 DEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGV 462



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 144/290 (49%), Gaps = 28/290 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR-----ASLHPSERF 56
           Y SLI G CK  R++ A +   EM+++G+ P+ V YN L++G C +     AS +  E  
Sbjct: 294 YGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEML 353

Query: 57  EKTIR--------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +K I                      AE +  E++ +GI PD  +++I+++ Y R    +
Sbjct: 354 KKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAK 413

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    + M   GI PT  TY+S++  L    R+++A++L  ++   GV P A  +N   
Sbjct: 414 KAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALI 473

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCV-PNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
             +    +  GA +L + M  D + V P+  ++N ++       +++  RE+++++K  G
Sbjct: 474 DGHCSNSNVKGAFELLKDM--DRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRG 531

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           + PD  S+  LI G   +   K+A +   EM++ G  P  +T+  L +GL
Sbjct: 532 IKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGL 581



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 142/299 (47%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++++G+C   R++ A+  L  M  + +EP+  TY  L++G+C++  L           
Sbjct: 259 YNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRL----------E 308

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F+EM  +G+ P    ++ ++  +       ++    + M +KGI PT++TY+S++
Sbjct: 309 EASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLI 368

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L    R ++AE ++ E+   G+ P A TYN     Y    +A  A  L+ +M   G+ 
Sbjct: 369 HALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGI- 427

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P   +Y  L+ +    NRM    +++  +   G+ PD   +  LI G C     K A +
Sbjct: 428 KPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFE 487

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
              +M    + P +VTF T+ +G  +   +   R L     ++ +  + I+F +    Y
Sbjct: 488 LLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGY 546



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 10/152 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+ +LI G C  + +  A   L +M    V P+ VT+N ++ G CR          E  +
Sbjct: 468 MFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCR----------EGKV 517

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++FDEM+ RGI+PD  SF+ ++  YSR    + +    N M + G  PTV TY+++
Sbjct: 518 EEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNAL 577

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
           V+ LC     + AEELL EMV  G+ P   TY
Sbjct: 578 VQGLCKNQEGDLAEELLKEMVSKGMTPDDTTY 609



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 121/287 (42%), Gaps = 46/287 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++  LI   C +NR D A      M E+GV P + T N LL+   +   L+ +E      
Sbjct: 153 VFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLK---LNRTEA----- 204

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  ++ EM    I+  V +F+I+++V  +  + + + D +  M+  G+ P + TY+++
Sbjct: 205 --AWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTI 262

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V   CS GR+E A+ +L  M R  + P + TY                          G+
Sbjct: 263 VHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLI---------------------SGM 301

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C                  R++   +I+ ++   GL P    Y  LI G C K     A 
Sbjct: 302 C---------------KQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMAS 346

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            Y  EM++KG+ P   T+ +L   L           + K++ E+ I+
Sbjct: 347 AYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGIS 393



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 6/191 (3%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           MKEKG+ PT+ T +S++       R E A  L  EM R  +  S  T+N           
Sbjct: 177 MKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGK 236

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
              A      M+  G+  PN+ +YN ++  + +  R++    I   +K   + PD  +Y 
Sbjct: 237 LKKAKDFVGHMETSGV-KPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYG 295

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS---DMLRTWRR--LKK 279
            LI G+C++ + +EA + F EM++KGL P  V + TL  G       DM   ++   LKK
Sbjct: 296 SLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKK 355

Query: 280 KLDEESITFGS 290
            +     T+ S
Sbjct: 356 GISPTMSTYNS 366



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 98/201 (48%), Gaps = 11/201 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSL++   K NR+  A+    ++   GV P+ + +N L++G C  ++          ++
Sbjct: 434 YTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSN----------VK 483

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++  +M    + PD  +F+ ++  + R  + + + +  + MK +GI P   ++++++
Sbjct: 484 GAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLI 543

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G I+DA  +  EM+  G  P+  TYN   +     ++ + A +L ++M   G+ 
Sbjct: 544 SGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGM- 602

Query: 182 VPNMHSYNILIGMFMALNRMD 202
            P+  +Y  LI     +N  D
Sbjct: 603 TPDDTTYFTLIEGIAKVNIPD 623


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 145/297 (48%), Gaps = 40/297 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSL+   CKI  +  A R   EM+E GVE NVVTY  L++G+C       +ER    ++
Sbjct: 276 YTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLC------DAER----MK 325

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK+F +M   G+ P++ S++ ++H + +A     +L+ LN +K +GI P +  Y + +
Sbjct: 326 EAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFI 385

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
             LC   +IE A+ ++ EM  NG+  +   Y      Y    +    + L  +M+E    
Sbjct: 386 WGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHE 445

Query: 178 ----------DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
                     DGLC   + S  I           D    + ND    GL P+   YT +I
Sbjct: 446 VTVVTFCVLIDGLCKNKLVSKAI-----------DYFGRMSNDF---GLQPNAAVYTAMI 491

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG-LIQSDMLRTWRRLKKKLDE 283
            GLC++ + K A   F +M ++GL+P +  + +L  G L Q +ML     L+ K+ E
Sbjct: 492 DGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEAL-ALRDKMAE 547



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 127/267 (47%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G+ K+ R+D    F  EM     EP+V+TYN L+N  C+   L     F     
Sbjct: 171 YNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEF----- 225

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                + EM+  G++P+V S+S ++  + +    Q ++     M+  G  P   TY+S+V
Sbjct: 226 -----YREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLV 280

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + DA  L  EM+  GV  +  TY          +    A KL+ +M   G+ 
Sbjct: 281 DANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGV- 339

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+ SYN LI  F+    MD   E+ N++KG G+ PDL  Y   I GLC  +K + A  
Sbjct: 340 IPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKV 399

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
              EM E G+    + + TL     +S
Sbjct: 400 VMNEMQENGIKANTLIYTTLMDAYFKS 426



 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 133/264 (50%), Gaps = 11/264 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L++ + K+ + D  +RF  +MI  G +P V TYN++++ + +          E  I  A 
Sbjct: 104 LLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWK----------EGDIEAAR 153

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +F+EM+ RG+ PD  +++ ++  Y +  +   ++     MK     P V TY+S++ C 
Sbjct: 154 GLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCF 213

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G++    E   EM ++G+ P+  +Y+     +        A+K Y  M+  G  VPN
Sbjct: 214 CKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGH-VPN 272

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
             +Y  L+     +  +     + N++   G+  ++ +YT LI GLC+ ++ KEA + F 
Sbjct: 273 EFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFG 332

Query: 245 EMIEKGLLPQKVTFETLYRGLIQS 268
           +M+  G++P   ++  L  G +++
Sbjct: 333 KMVTAGVIPNLASYNALIHGFVKA 356



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 127/288 (44%), Gaps = 41/288 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR-----RA-------- 48
           YT+LI G C   R+  AE+  G+M+  GV PN+ +YN L++G  +     RA        
Sbjct: 311 YTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELK 370

Query: 49  --SLHPSERFEKT----------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
              + P      T          I  A+ V +EM+  GI+ +   ++ ++  Y ++  P 
Sbjct: 371 GRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPT 430

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN-GVCPSAETYNCF 155
             L  L  M+E     TV T+  ++  LC    +  A +  G M  + G+ P+A  Y   
Sbjct: 431 EGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAM 490

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-------GMFMALNRMDMVREIW 208
                       A  L+ QM ++GL VP+  +Y  L+        M  AL   D + EI 
Sbjct: 491 IDGLCKENQVKAATTLFEQMAQEGL-VPDRTAYTSLMDGNLKQGNMLEALALRDKMAEI- 548

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
                 G+  DL +YT L+ G  +  + ++A  +  EMI + +LP +V
Sbjct: 549 ------GMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPDEV 590



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 9/172 (5%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN----CFFKEYR 160
           MK   + P   + + ++      G+ +  +    +M+  G  P+  TYN    C +KE  
Sbjct: 89  MKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKE-- 146

Query: 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
              D   A  L+ +MK  GL +P+  +YN +I  +  + R+D     + ++K     PD+
Sbjct: 147 --GDIEAARGLFEEMKFRGL-IPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDV 203

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
            +Y  LI+  C+  K  +  +++ EM + GL P  V++ TL     + DM++
Sbjct: 204 ITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQ 255



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 100/220 (45%), Gaps = 12/220 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y + I+G C + +I+ A+  + EM E G++ N + Y  L++   +  S +P+E      
Sbjct: 380 LYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFK--SGNPTEGLH--- 434

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK-GICPTVATYSS 119
                + +EM+    E  V +F +++    +      ++D    M    G+ P  A Y++
Sbjct: 435 -----LLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTA 489

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC   +++ A  L  +M + G+ P    Y         + +   A+ L  +M E G
Sbjct: 490 MIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIG 549

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
           + + ++ +Y  L+  F   N++   R    ++ G  + PD
Sbjct: 550 MKL-DLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPD 588


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 154/292 (52%), Gaps = 18/292 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++LI G CK  + D  E    +MI  G  PNVVTYN L+NG+C+      +++ E+   
Sbjct: 228 FSTLIDGLCKCGQTD--EACNDDMIAGGYVPNVVTYNALVNGLCK------ADKMER--- 276

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + + M  +G+ PDV ++S+++  + +A +   +L+ L+ M  +G  P V T++S++
Sbjct: 277 -AHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSII 335

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R  +A ++  ++    + P   T+N          +   A  L+ +M    + 
Sbjct: 336 DGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNM- 394

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ ++  LI       +++  R+I + +   G+ P++ +Y +L+HGLC+  + +E C+
Sbjct: 395 QPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCE 454

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKK-KLDEESITF 288
           +  EM+  G +P+ +T+ +L   L ++    D L+   +LK    D +++T+
Sbjct: 455 FLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTY 506



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 136/305 (44%), Gaps = 47/305 (15%)

Query: 2   YTSLIYGWCKINRIDMA-ERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y  ++   C+      A E F GEM   GV P +VTYN ++NG+C+   L          
Sbjct: 48  YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGA-------- 99

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               ++F+E+  RG  PDV +++ ++    +A   + +      M  +G  P V TYS +
Sbjct: 100 --GMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVL 157

Query: 121 VKCLCSCGRIEDAEELLGEMVRNG--VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE- 177
           +  LC  GRI++A EL+ EM R    V P+  TYN F      +     A +L R +++ 
Sbjct: 158 INGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDG 217

Query: 178 ---------------DGLC------------------VPNMHSYNILIGMFMALNRMDMV 204
                          DGLC                  VPN+ +YN L+      ++M+  
Sbjct: 218 SLRVSPDTVTFSTLIDGLCKCGQTDEACNDDMIAGGYVPNVVTYNALVNGLCKADKMERA 277

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             +   +   G+ PD+ +Y++L+   C+  +  EA +    M  +G  P  VTF ++  G
Sbjct: 278 HAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDG 337

Query: 265 LIQSD 269
           L +SD
Sbjct: 338 LCKSD 342



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 130/270 (48%), Gaps = 11/270 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+  +CK +R+D A   L  M  RG  PNVVT+N +++G+C+      S+R  +  +
Sbjct: 296 YSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCK------SDRSGEAFQ 349

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V++ M V    PD  +F+I++    +A   + +      M  K + P V T+ +++
Sbjct: 350 IALQVYNRMLV----PDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALI 405

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++E A ++L  M   GV P+  TYN                +   +M   G C
Sbjct: 406 DGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSG-C 464

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP   +Y  L+      +R D   ++ + +K  G  PD  +Y +L+ GL +  K ++A  
Sbjct: 465 VPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAIT 524

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              EM+ KG  P   TF   + GL +S  L
Sbjct: 525 VLEEMVGKGHQPDSFTFAACFGGLHRSGNL 554



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 140/298 (46%), Gaps = 22/298 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI   CK   ++ A R  G M  RG  PNVVTY+VL+NG+C+             I 
Sbjct: 119 YNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGR----------ID 168

Query: 62  NAEKVFDEMRVRGIE--PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG--ICPTVATY 117
            A ++  EM  +  +  P++ +++  L    +      + + +  +++    + P   T+
Sbjct: 169 EARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTF 228

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           S+++  LC CG+ ++A     +M+  G  P+  TYN              A  +   M +
Sbjct: 229 STLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVD 286

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G+  P++ +Y++L+  F   +R+D   E+ + +   G  P++ ++  +I GLC+  +  
Sbjct: 287 KGV-TPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSG 345

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGS 290
           EA Q  +++  + L+P KVTF  L  G  ++        L      K +  + +TFG+
Sbjct: 346 EAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGA 403



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 120/263 (45%), Gaps = 14/263 (5%)

Query: 28  RGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 87
           R    +V  YN++L  +CR           +T R  E    EM   G+ P + +++ +++
Sbjct: 39  RSSSRSVADYNIVLQSLCRAG---------ETARALEIFRGEMARDGVAPTIVTYNTIIN 89

Query: 88  VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
              ++++    ++    + ++G  P V TY++++  LC  G +E+A  L G M   G  P
Sbjct: 90  GLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVP 149

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV-PNMHSYNILIGMFMALNRMDMVRE 206
           +  TY+            + A +L ++M      V PN+ +YN  +      +      E
Sbjct: 150 NVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACE 209

Query: 207 IWNDVKGSGL--GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           +   ++   L   PD  +++ LI GLC+  +  EAC    +MI  G +P  VT+  L  G
Sbjct: 210 LMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACND--DMIAGGYVPNVVTYNALVNG 267

Query: 265 LIQSDMLRTWRRLKKKLDEESIT 287
           L ++D +     + + + ++ +T
Sbjct: 268 LCKADKMERAHAMIESMVDKGVT 290



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 10/120 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+Y  C+ +R D A + + ++   G +P+ VTYN+L++G      L  S + E+ I 
Sbjct: 471 YGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDG------LWKSGKTEQAI- 523

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               V +EM  +G +PD  +F+       R+     +++ L  +  KG+ P   T SS++
Sbjct: 524 ---TVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSIL 580


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 145/296 (48%), Gaps = 27/296 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           ++SLI G CKI  I  A   L EM+ +G +PNV T+  L++G+C++     + R      
Sbjct: 301 FSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLV 360

Query: 57  ---------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                E+ +  AE +   M+ +G+ P+  +++ ++  + +A   
Sbjct: 361 RSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNF 420

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             + + ++ M ++G  P + TY++++  LC  GR  +A +LL   +++G+     TY   
Sbjct: 421 GRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTIL 480

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
             E+  + D   A+ ++ +M + GL  P+MH+YN+LI  F    +++   +++ +  G G
Sbjct: 481 ISEFCRQTDNKQALAIFSRMFKVGL-QPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLG 539

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           L P  ++YT +I G C       A ++F +M + G  P  +T+  L  GL     L
Sbjct: 540 LLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKL 595



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 125/262 (47%), Gaps = 14/262 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++ G+C++ RI   +R+L +MIERG   +        N  C   +L  S   EK   
Sbjct: 231 YKLMVVGYCRMGRISDVDRWLKDMIERGYAVD--------NATC---TLMISTFSEKGFV 279

Query: 62  N-AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           N A   F +    G+ P++ +FS +++   +    + + + L  M  KG  P V T++++
Sbjct: 280 NRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTAL 339

Query: 121 VKCLCSCGRIEDAEELLGEMVR-NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +  LC  G  E A  L  ++VR +   P+  TY C    Y   +  N A  L  +MKE G
Sbjct: 340 IDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQG 399

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           L VPN ++Y  LI             E+ + +   G  P++ +Y  +I GLC+K ++ EA
Sbjct: 400 L-VPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEA 458

Query: 240 CQYFVEMIEKGLLPQKVTFETL 261
            +     ++ GL   KVT+  L
Sbjct: 459 YKLLRRGLKSGLHADKVTYTIL 480



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 22/288 (7%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           +D AE+   EM++R V P+  +Y +++ G CR   +   +R+ K          +M  RG
Sbjct: 209 VDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLK----------DMIERG 258

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
              D  + ++++  +S       +        + G+ P +  +SS++  LC  G I+ A 
Sbjct: 259 YAVDNATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAF 318

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           E+L EMVR G  P+  T+         +     A +L+ ++       PN+++Y  +I  
Sbjct: 319 EMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMING 378

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
           +    +++    +   +K  GL P+ ++YT LI G C+   +  A +    M ++G  P 
Sbjct: 379 YCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPN 438

Query: 255 KVTFETLYRGLIQS-------DMLRTWRRLKKKLDEESITFG---SEF 292
             T+  +  GL +         +LR  R LK  L  + +T+    SEF
Sbjct: 439 IFTYNAIIDGLCKKGRFPEAYKLLR--RGLKSGLHADKVTYTILISEF 484



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 119/282 (42%), Gaps = 49/282 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI  +C+      A      M + G++P++ TYNVL+   CR          +K + 
Sbjct: 477 YTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCR----------QKKVE 526

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            +EK+F+E    G+ P   +++ ++  Y R      ++   + M++ G  P   TY +++
Sbjct: 527 ESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALI 586

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+  ++++A +L   M+ NG+ P   T      EY  + D+  AM            
Sbjct: 587 SGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQGDSATAM------------ 634

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
                         + L R++  +++W           + +   LI  LC ++K   A  
Sbjct: 635 --------------IILERLE--KKLW-----------IRTVNTLIRKLCSEKKVGVAAL 667

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           +F ++++K L   ++T         +S+       L +++ +
Sbjct: 668 FFHKLLDKDLNVDRITLAAFTTACYESNKFALVSDLSERISK 709



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/103 (21%), Positives = 49/103 (47%), Gaps = 1/103 (0%)

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
           + E   C  + +        A+ +  +M+  GL V      N +I + +AL  +D   ++
Sbjct: 157 ATEVMQCMVRSFSEIGKLKEAVNMVIEMQNHGL-VLKARILNFVIDVALALGFVDYAEKV 215

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           ++++    + PD  SY +++ G C   +  +  ++  +MIE+G
Sbjct: 216 FDEMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERG 258


>gi|297807171|ref|XP_002871469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317306|gb|EFH47728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 602

 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 141/279 (50%), Gaps = 15/279 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++  L+ GW +  ++  AE+   EM    V+P VVTY  L+ G CR           + +
Sbjct: 252 IFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRM----------RRV 301

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN--FMKEKGICPTVATYS 118
             A ++ +EM++  +E     F+ ++     A +   +L  +   F+ E G  PT+ TY+
Sbjct: 302 EIAMEILEEMKMAEMELTFMVFNPIIDGLGEAGRLSEALGMMERFFVCESG--PTIVTYN 359

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           S+VK  C  G +  A ++L  M+  GV P+  TYN FFK +         M LY ++ E 
Sbjct: 360 SLVKNFCKAGDLPGASKILKMMMTRGVEPTTSTYNHFFKYFSKHNKTEEGMNLYFKLIEA 419

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G   P+  +Y++++ M     ++ +  ++  ++K  G+ PDL + TML+H LC     +E
Sbjct: 420 GHS-PDRLTYHLILKMLCEDGKLSLAIQVNKEMKNRGIDPDLLTTTMLMHLLCRLDMLEE 478

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A + F   + +G++PQ +TF+ +  GL    M    +RL
Sbjct: 479 AFEEFDNAVRRGIIPQYITFKMIDNGLRSKGMTDMAKRL 517



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 35/185 (18%)

Query: 66  VFDEMRVRGIEPD----VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           VFD  RVR  E        +F +++  Y+RA   Q ++    F +         +Y  V 
Sbjct: 158 VFD--RVRSDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFAR---------SYEPVC 206

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K   S   ++  E LL  + + G    A  Y    +  RG  D+N               
Sbjct: 207 K---SASELKLLEVLLDALCKEGYVREASVY---LERRRGMMDSN--------------W 246

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++  +NIL+  +    ++    ++W ++K   + P + +Y  LI G C  ++ + A +
Sbjct: 247 VPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVEIAME 306

Query: 242 YFVEM 246
              EM
Sbjct: 307 ILEEM 311



 Score = 39.3 bits (90), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 60/326 (18%), Positives = 124/326 (38%), Gaps = 46/326 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVV---TYNVLLNGVCRRASLHPSERFE 57
           ++ S+I   CK    ++A   + + +      N+V   T+ VL+    R   +  + R  
Sbjct: 137 LFDSVINSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQAIRAF 196

Query: 58  KTIRNAEKV---FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV 114
           +  R+ E V     E+++  +  D    ++    Y R  +  + L++   M +    P+V
Sbjct: 197 EFARSYEPVCKSASELKLLEVLLD----ALCKEGYVR--EASVYLERRRGMMDSNWVPSV 250

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
             ++ ++       +++ AE+L  EM    V P+  TY    + Y   +    AM++  +
Sbjct: 251 RIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVEIAMEILEE 310

Query: 175 MKE--------------DGL--------------------CVPNMHSYNILIGMFMALNR 200
           MK               DGL                      P + +YN L+  F     
Sbjct: 311 MKMAEMELTFMVFNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGD 370

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           +    +I   +   G+ P   +Y        +  K +E    + ++IE G  P ++T+  
Sbjct: 371 LPGASKILKMMMTRGVEPTTSTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHL 430

Query: 261 LYRGLIQSDMLRTWRRLKKKLDEESI 286
           + + L +   L    ++ K++    I
Sbjct: 431 ILKMLCEDGKLSLAIQVNKEMKNRGI 456


>gi|413938248|gb|AFW72799.1| hypothetical protein ZEAMMB73_717335 [Zea mays]
          Length = 501

 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 147/291 (50%), Gaps = 23/291 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L  GWC++     A   L +M+E G+ P   TYN++L G  R   L          +
Sbjct: 212 YNTLADGWCRVKDTSRALDILRQMVESGIAPTKATYNIILKGFFRSGQL----------Q 261

Query: 62  NAEKVFDEMRVRG-----IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           +A   F +M+ RG      +PDV S++ VLH    A Q   +    + M  +G  P+ AT
Sbjct: 262 HAWDFFLQMKRRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSIEGCKPSTAT 321

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+++++  C  G +EDA  +  +MVR G  P+  TY    +          AMKL  +MK
Sbjct: 322 YNALIQVTCKKGNLEDAVAVFDDMVRKGYIPNVVTYTVLIRGLCHAGKVVRAMKLLDRMK 381

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV-KGSGLGPDLDSYTMLIHGLCEKQK 235
            +G C PN+ +YN+LI   +    ++   +++  + KG    P+ D+Y ++I  +  +++
Sbjct: 382 SEG-CEPNVQTYNVLIRYSLEEGEIEKGLDLFETMSKGEECLPNQDTYNIIISAMFVRKR 440

Query: 236 WKE---ACQYFVEMIEKGLLPQKVTFETLYRGLI---QSDMLRTWRRLKKK 280
            ++   A +  VEM+++G LP+K  F  +  GL+     ++ R   R+++K
Sbjct: 441 AEDMAVAARMVVEMVDRGYLPRKFMFNRVLNGLMLTGNQELSRELLRMQEK 491



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 110/239 (46%), Gaps = 9/239 (3%)

Query: 54  ERFEKTIRNAE---KVFDEM-RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG 109
           ERF  + R  +   ++F  + R  GI  D+  F+ +L    ++ +   +   +  ++++ 
Sbjct: 146 ERFAMSHRRPDLAIRLFLSLHRSHGIAQDLPLFNSLLDALVKSRRASKAASLVRALEQR- 204

Query: 110 ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAM 169
             P   TY+++    C       A ++L +MV +G+ P+  TYN   K +        A 
Sbjct: 205 FPPDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPTKATYNIILKGFFRSGQLQHAW 264

Query: 170 KLYRQMKEDGL----CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
             + QMK  G     C P++ SY  ++       ++D  R++++++   G  P   +Y  
Sbjct: 265 DFFLQMKRRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSIEGCKPSTATYNA 324

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
           LI   C+K   ++A   F +M+ KG +P  VT+  L RGL  +  +    +L  ++  E
Sbjct: 325 LIQVTCKKGNLEDAVAVFDDMVRKGYIPNVVTYTVLIRGLCHAGKVVRAMKLLDRMKSE 383


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 138/286 (48%), Gaps = 26/286 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-------- 53
           YT LI+G+C + +     R L +M++R V  NV TYN+L++ +C++  L  +        
Sbjct: 256 YTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMI 315

Query: 54  ERFEKT-----------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           ER ++                  +  A K+FD     GI PDV S++I++  Y + ++  
Sbjct: 316 ERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRID 375

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   N M  K + P + TYSS++  LC  GRI  A EL   +   G  P+  TYN   
Sbjct: 376 EALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIML 435

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                 +  + A++L+  M E GL  PN+ SYNILI  +    R+D    ++ ++    L
Sbjct: 436 DALCKIQLVDKAIELFNLMFERGL-TPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNL 494

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
            PD  +Y  LI GLC+  +   A + F  M + G     +T+  L+
Sbjct: 495 VPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILF 540



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 137/286 (47%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CKI     A   L +M  + V PNVV YN++++G+C+          +  + 
Sbjct: 186 YGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCK----------DGLVT 235

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++ ++  RGI+PDV +++ ++H +    Q +     L  M ++ +   V TY+ ++
Sbjct: 236 EARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILI 295

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +  A ++   M+  G  P   T+N     Y    D   A KL+    E G+ 
Sbjct: 296 DALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGI- 354

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SYNILI  +   NR+D    ++N +    L P++ +Y+ LI GLC+  +   A +
Sbjct: 355 TPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWE 414

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            F  + + G  P  +T+  +   L +  ++     L   + E  +T
Sbjct: 415 LFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLT 460



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 16/288 (5%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           + ID A      +I     P+VV +N++L  + +           K    A  +  +M +
Sbjct: 57  DAIDDAVALFTRLITMHPLPSVVEFNMILGSIVKM----------KHYPTAISLSKQMGL 106

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           RGI P + + SI+++ Y        +   L  + ++G      T ++++K LC  G +  
Sbjct: 107 RGITPSIVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRK 166

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A E    +V  G      TY               A +L  +M E  +  PN+  YN+++
Sbjct: 167 ALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKM-EGQVVRPNVVIYNMIV 225

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                   +   R++++DV G G+ PD+ +YT LIHG C   +W+E  +   +M+++ + 
Sbjct: 226 DGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVN 285

Query: 253 PQKVTFETLYRGLIQSDMLRTWRRLKKKLDE-----ESITFGSEFQNY 295
               T+  L   L +  ML     ++  + E     + +TF +    Y
Sbjct: 286 LNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGY 333



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 44/298 (14%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C +  +  A   LG +++RG + N +T   ++ G+C              +R A 
Sbjct: 119 LINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLC----------INGEVRKAL 168

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           +  D +  +G   D  ++  +++   +    + + + L+ M+ + + P V  Y+ +V  L
Sbjct: 169 EFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGL 228

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK-------------DANGAMKL 171
           C  G + +A +L  ++V  G+ P   TY C    + G               D N  + +
Sbjct: 229 CKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNV 288

Query: 172 YR-QMKEDGLCV--------------------PNMHSYNILIGMFMALNRMDMVREIWND 210
           Y   +  D LC                     P++ ++N L+  +   N +   R++++ 
Sbjct: 289 YTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDT 348

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
               G+ PD+ SY +LI G C+  +  EA   F +M  K L P  VT+ +L  GL +S
Sbjct: 349 FAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKS 406



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 10/158 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI G CK  RI  A      + + G  PNV+TYN++L+ +C+           + + 
Sbjct: 396 YSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKI----------QLVD 445

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F+ M  RG+ P+V+S++I+++ Y ++ +   +++    M  + + P   TY+ ++
Sbjct: 446 KAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLI 505

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
             LC  GRI  A EL   M   G      TYN  F  +
Sbjct: 506 DGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDAF 543


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 142/304 (46%), Gaps = 17/304 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G CK  R+D A++ L EM   G   N+VTYN L+NG+                R
Sbjct: 92  FNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAG------------R 139

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSV 120
           + E V   M+     PD  +++ ++H + ++ +   +   L  MK++  C P   TYS +
Sbjct: 140 SGEAVL-VMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSIL 198

Query: 121 VKCLCSCGRIEDAEELLGEMV-RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +  LC    +  A+ELL EM+ R   C S   +N     Y   +D + A +L   M E G
Sbjct: 199 INGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHG 258

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C P++ +Y+ +I        +D    +   +   G  PD+ +YT+L+ GLC+  K  EA
Sbjct: 259 -CAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEA 317

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL-DEESITFGSEFQNYHFK 298
           C+    M+E G  P  VT+  ++ GL + D L     L   + D+  +T    F+     
Sbjct: 318 CRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLLLS 377

Query: 299 PYRR 302
             +R
Sbjct: 378 VKKR 381



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 123/245 (50%), Gaps = 20/245 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y ++I+G+CK   ID A  FL EM +R G  P+  TY++L+NG+C+ ++L          
Sbjct: 159 YNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNL---------- 208

Query: 61  RNAEKVFDEMRVR-GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           R A+++  EM  R      V +F+ ++  Y +A     + + L+ M E G  P V TYS+
Sbjct: 209 RKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYST 268

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC CG ++    LL +MV  G  P   TY               A +L ++M EDG
Sbjct: 269 IIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDG 328

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK------ 233
            C PN  +Y+++      ++++DM  ++   ++  G   D+ ++  L+  + ++      
Sbjct: 329 -CTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLLLSVKKRLLDRAA 387

Query: 234 -QKWK 237
            QKWK
Sbjct: 388 FQKWK 392



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 131/288 (45%), Gaps = 14/288 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY   ++  CK  ++  A   +  M +   +P+VVT+N L+ G+C+   L          
Sbjct: 56  MYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLD--------- 106

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A++V DEM   G   ++ +++ +++  S A +   S + +  M+     P   TY+++
Sbjct: 107 -EAQQVLDEMERSGFAANLVTYNTLINGLSSAGR---SGEAVLVMQGMTTTPDTQTYNAI 162

Query: 121 VKCLCSCGRIEDAEELLGEM-VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +   C  G I+ A   L EM  R G  P   TY+          +   A +L ++M    
Sbjct: 163 IHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRK 222

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C  ++ ++N L+  +     +D  RE+ + +   G  PD+ +Y+ +I GLC      + 
Sbjct: 223 DCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKG 282

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
                +M+ +G  P  VT+  L  GL ++  +    RL K++ E+  T
Sbjct: 283 FALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCT 330



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 113/251 (45%), Gaps = 17/251 (6%)

Query: 36  TYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR-GIEPDVTSFSIVLHVYSRAHQ 94
           TY VL+   C    L            A  +  EM  + G+ P  + ++  +H   ++ +
Sbjct: 20  TYFVLVRAHCLAGELQA----------AMDLLREMEQQPGMAPTPSMYNFFVHALCKSGK 69

Query: 95  PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
              +++ +  MK+    P V T+++++  LC  GR+++A+++L EM R+G   +  TYN 
Sbjct: 70  VPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNT 129

Query: 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG- 213
                     +  A+ + + M       P+  +YN +I  F     +D       ++K  
Sbjct: 130 LINGLSSAGRSGEAVLVMQGMTT----TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQR 185

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI-EKGLLPQKVTFETLYRGLIQSDMLR 272
           +G  PD  +Y++LI+GLC+    ++A +   EMI  K      V F TL  G  ++  L 
Sbjct: 186 AGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLD 245

Query: 273 TWRRLKKKLDE 283
             R L   + E
Sbjct: 246 RARELLSSMLE 256



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 8/207 (3%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK-GICPTVATYSSVVKCLCSCGRIEDAEEL 136
           D  ++ +++  +  A + Q ++D L  M+++ G+ PT + Y+  V  LC  G++ +A E+
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 137 LGEMVRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           +  M ++G C P   T+N            + A ++  +M+  G    N+ +YN LI   
Sbjct: 77  VKNM-KDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGF-AANLVTYNTLINGL 134

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-GLLPQ 254
            +  R     E    ++G    PD  +Y  +IHG C+  +   A  +  EM ++ G  P 
Sbjct: 135 SSAGRSG---EAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPD 191

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKKL 281
             T+  L  GL +S  LR    L +++
Sbjct: 192 TFTYSILINGLCKSSNLRKADELLQEM 218


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 142/304 (46%), Gaps = 17/304 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G CK  R+D A++ L EM   G   N+VTYN L+NG+                R
Sbjct: 92  FNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAG------------R 139

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSV 120
           + E V   M+     PD  +++ ++H + ++ +   +   L  MK++  C P   TYS +
Sbjct: 140 SGEAVL-VMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSIL 198

Query: 121 VKCLCSCGRIEDAEELLGEMV-RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +  LC    +  A+ELL EM+ R   C S   +N     Y   +D + A +L   M E G
Sbjct: 199 INGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHG 258

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C P++ +Y+ +I        +D    +   +   G  PD+ +YT+L+ GLC+  K  EA
Sbjct: 259 -CAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEA 317

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL-DEESITFGSEFQNYHFK 298
           C+    M+E G  P  VT+  ++ GL + D L     L   + D+  IT    F+     
Sbjct: 318 CRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALLLS 377

Query: 299 PYRR 302
             +R
Sbjct: 378 VKKR 381



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 123/245 (50%), Gaps = 20/245 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y ++I+G+CK   ID A  FL EM +R G  P+  TY++L+NG+C+ ++L          
Sbjct: 159 YNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNL---------- 208

Query: 61  RNAEKVFDEMRVR-GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           R A+++  EM  R      V +F+ ++  Y +A     + + L+ M E G  P V TYS+
Sbjct: 209 RKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYST 268

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC CG ++    LL +MV  G  P   TY               A +L ++M EDG
Sbjct: 269 IIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDG 328

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK------ 233
            C PN  +Y+++      ++++DM  ++   ++  G   D+ ++  L+  + ++      
Sbjct: 329 -CTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALLLSVKKRLLDRAA 387

Query: 234 -QKWK 237
            QKWK
Sbjct: 388 FQKWK 392



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 131/288 (45%), Gaps = 14/288 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY   ++  CK  ++  A   +  M +   +P+VVT+N L+ G+C+   L          
Sbjct: 56  MYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLD--------- 106

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A++V DEM   G   ++ +++ +++  S A +   S + +  M+     P   TY+++
Sbjct: 107 -EAQQVLDEMERSGFAANLVTYNTLINGLSSAGR---SGEAVLVMQGMTTTPDTQTYNAI 162

Query: 121 VKCLCSCGRIEDAEELLGEM-VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +   C  G I+ A   L EM  R G  P   TY+          +   A +L ++M    
Sbjct: 163 IHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRK 222

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C  ++ ++N L+  +     +D  RE+ + +   G  PD+ +Y+ +I GLC      + 
Sbjct: 223 DCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKG 282

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
                +M+ +G  P  VT+  L  GL ++  +    RL K++ E+  T
Sbjct: 283 FALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCT 330



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 113/251 (45%), Gaps = 17/251 (6%)

Query: 36  TYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR-GIEPDVTSFSIVLHVYSRAHQ 94
           TY VL+   C    L            A  +  EM  + G+ P  + ++  +H   ++ +
Sbjct: 20  TYFVLVRAHCLAGELQA----------AMDLLREMEQQPGMAPTPSMYNFFVHALCKSGK 69

Query: 95  PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
              +++ +  MK+    P V T+++++  LC  GR+++A+++L EM R+G   +  TYN 
Sbjct: 70  VPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNT 129

Query: 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG- 213
                     +  A+ + + M       P+  +YN +I  F     +D       ++K  
Sbjct: 130 LINGLSSAGRSGEAVLVMQGMTT----TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQR 185

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI-EKGLLPQKVTFETLYRGLIQSDMLR 272
           +G  PD  +Y++LI+GLC+    ++A +   EMI  K      V F TL  G  ++  L 
Sbjct: 186 AGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLD 245

Query: 273 TWRRLKKKLDE 283
             R L   + E
Sbjct: 246 RARELLSSMLE 256



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 8/207 (3%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK-GICPTVATYSSVVKCLCSCGRIEDAEEL 136
           D  ++ +++  +  A + Q ++D L  M+++ G+ PT + Y+  V  LC  G++ +A E+
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 137 LGEMVRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           +  M ++G C P   T+N            + A ++  +M+  G    N+ +YN LI   
Sbjct: 77  VKNM-KDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGF-AANLVTYNTLINGL 134

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-GLLPQ 254
            +  R     E    ++G    PD  +Y  +IHG C+  +   A  +  EM ++ G  P 
Sbjct: 135 SSAGRSG---EAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPD 191

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKKL 281
             T+  L  GL +S  LR    L +++
Sbjct: 192 TFTYSILINGLCKSSNLRKADELLQEM 218


>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 138/278 (49%), Gaps = 12/278 (4%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           SL+ G C+   +  A   L  M+E+G   N V Y VLL+G  +  +L            A
Sbjct: 497 SLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLE----------GA 546

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
           + ++ EM+ RGI PD  +F+ ++   S+A   + + +    M   G  P    Y+S+++ 
Sbjct: 547 QFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRG 606

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC CGR+ +A +L  EM + G+     T+N     +  R     A++ +  M+  GL +P
Sbjct: 607 LCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGL-LP 665

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++ ++NILIG +     M    EI N +   GL PD+ +Y   +HG C  +K  +A    
Sbjct: 666 DIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIIL 725

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            ++I  G++P  VT+ T+  G I SD+L     L  KL
Sbjct: 726 DQLISAGIVPDTVTYNTMLSG-ICSDILDRAMILTAKL 762



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 118/242 (48%), Gaps = 11/242 (4%)

Query: 20  RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDV 79
           +   +MI +G  P+ +T+N ++ G CR          +  +   E +   M      PDV
Sbjct: 233 KLFKDMIFKGPRPSNLTFNAMICGFCR----------QHRVVVGESLLHLMPKFMCSPDV 282

Query: 80  TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
            +F+I+++      +  +++D L+ M   G+ P+VAT+++++  LC  G + +A +L   
Sbjct: 283 VTFNILINACCIGGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDG 342

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
           +   G+ P+A  YN     Y   ++   A  LY +M+  G+  P+  ++NIL+       
Sbjct: 343 IQDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEMRTTGVS-PDCVTFNILVWGHYKYG 401

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           R++    +  D+  SGL  D   Y +++  LC   +  EA +   E++EKGL    V F 
Sbjct: 402 RIEDSDRLLKDLIVSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFN 461

Query: 260 TL 261
           +L
Sbjct: 462 SL 463



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 142/319 (44%), Gaps = 44/319 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T++++  C+   +  A +    + + G+ PN   YN L++G  +           + + 
Sbjct: 320 FTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFK----------AREVA 369

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +++EMR  G+ PD  +F+I++  + +  + + S   L  +   G+    + Y  +V
Sbjct: 370 QASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLYDVMV 429

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
             LC  GR+++A +LL E++  G+  S   +N     Y      + A + YR M      
Sbjct: 430 SSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFT 489

Query: 178 ----------DGLC-------------------VP-NMHSYNILIGMFMALNRMDMVREI 207
                      GLC                    P N  +Y +L+  +  +N ++  + +
Sbjct: 490 PSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFL 549

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           W ++K  G+ PD  ++T LI GL +    +EA + F+EM   G +P    + +L RGL  
Sbjct: 550 WKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCD 609

Query: 268 SDMLRTWRRLKKKLDEESI 286
              +    +L+K++ ++ +
Sbjct: 610 CGRVTEALKLEKEMRQKGL 628



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 144/312 (46%), Gaps = 30/312 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC---------------R 46
           + ++I G+C+ +R+ + E  L  M +    P+VVT+N+L+N  C                
Sbjct: 250 FNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGRTWVAIDWLHLMV 309

Query: 47  RASLHPSERFEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           R+ + PS     TI +          A K+FD ++  GI P+   ++ ++  Y +A +  
Sbjct: 310 RSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREVA 369

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      M+  G+ P   T++ +V      GRIED++ LL +++ +G+   +  Y+   
Sbjct: 370 QASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLYDVMV 429

Query: 157 KE--YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
               + GR D   AMKL +++ E GL + ++ ++N LIG +      D   E +  +   
Sbjct: 430 SSLCWAGRLDE--AMKLLQELLEKGLTL-SVVAFNSLIGAYSRAGLEDKAFEAYRIMVRC 486

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTW 274
           G  P   +   L+ GLC K   +EA      M+EKG    KV +  L  G  + + L   
Sbjct: 487 GFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGA 546

Query: 275 RRLKKKLDEESI 286
           + L K++ E  I
Sbjct: 547 QFLWKEMKERGI 558



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 110/234 (47%), Gaps = 14/234 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G C   R+  A +   EM ++G+  +  T+N++++G CRR  +          +
Sbjct: 600 YNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQM----------K 649

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A + F +M+  G+ PD+ +F+I++  Y +A     + + +N M   G+ P + TY++ +
Sbjct: 650 FAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYM 709

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   ++  A  +L +++  G+ P   TYN            + AM L  ++ + G  
Sbjct: 710 HGYCRMRKMNQAVIILDQLISAGIVPDTVTYNTMLSGI-CSDILDRAMILTAKLLKMGF- 767

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWND-VKGSGLGPDLDSYTMLIHGLCEKQ 234
           +PN+ + N+L+  F     M     IW   ++    G D  SY +L    C  Q
Sbjct: 768 IPNVITTNMLLSHFCK-QGMPEKALIWGQKLREISFGFDEISYRILDQAYCLMQ 820



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 108/238 (45%), Gaps = 1/238 (0%)

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           K+F +M  +G  P   +F+ ++  + R H+  +    L+ M +    P V T++ ++   
Sbjct: 233 KLFKDMIFKGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINAC 292

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  GR   A + L  MVR+GV PS  T+           +   A KL+  +++ G+  PN
Sbjct: 293 CIGGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGI-APN 351

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
              YN L+  +     +     ++ +++ +G+ PD  ++ +L+ G  +  + +++ +   
Sbjct: 352 AAIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLK 411

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR 302
           ++I  GL      ++ +   L  +  L    +L ++L E+ +T      N     Y R
Sbjct: 412 DLIVSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSR 469


>gi|356577604|ref|XP_003556914.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g32630-like [Glycine max]
          Length = 619

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 138/264 (52%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G CK  +++ AE  L EM  +GV+ NVV +N +++G C+R  +  + R +    
Sbjct: 325 FGALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFNTMMDGYCKRGMMDEAFRLQ---- 380

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 D M  +G E DV +++I+     + H+ + +   LN M EKG+ P V T ++ +
Sbjct: 381 ------DIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFI 434

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G + + E  L  + + GV P+  TYN     Y   +    A  L  +M E GL 
Sbjct: 435 EIYCQEGNLAEPERFLRNIEKRGVVPNIVTYNTLIDAYSKNEKVKQAHXLKAEMVEKGL- 493

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y  LI     ++++D   +++N++   G+  ++ +YT +I GL ++ +  EA +
Sbjct: 494 LPDVFTYTSLIHGECIVDKVDEALKLFNEMLVKGIRGNVKTYTAIISGLSKEGRADEALK 553

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            + EM+  GL+P    FE L   L
Sbjct: 554 LYDEMMRMGLIPDDRVFEALVGSL 577



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 132/299 (44%), Gaps = 46/299 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI  +    RI  AE+   EM ER VE +V  Y  +++  CR  +          +R
Sbjct: 255 YTILIEWYASSERIGEAEKVYEEMCERNVEMDVYVYTSMISWNCRAGN----------VR 304

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ---PQLSLDKL---------------- 102
            A  +FDEM  RGI P+  +F  ++    +A Q    ++ L+++                
Sbjct: 305 RASALFDEMICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFNTMM 364

Query: 103 ----------------NFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                           + M+ KG    V TY+ +   LC   R E+A+ +L  MV  GV 
Sbjct: 365 DGYCKRGMMDEAFRLQDIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVA 424

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+  T   F + Y    +     +  R +++ G+ VPN+ +YN LI  +    ++     
Sbjct: 425 PNVVTCATFIEIYCQEGNLAEPERFLRNIEKRGV-VPNIVTYNTLIDAYSKNEKVKQAHX 483

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +  ++   GL PD+ +YT LIHG C   K  EA + F EM+ KG+     T+  +  GL
Sbjct: 484 LKAEMVEKGLLPDVFTYTSLIHGECIVDKVDEALKLFNEMLVKGIRGNVKTYTAIISGL 542



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 140/313 (44%), Gaps = 34/313 (10%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR--------------- 47
           T ++   C+   +  A+  + EM  RGV P V TYN LLN    R               
Sbjct: 186 TIVVDVLCRRGEVGRAKELMNEMAARGVVPTVFTYNTLLNACVVRKDREGVDEILGLMER 245

Query: 48  ----ASL----------HPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93
               ASL            SER    I  AEKV++EM  R +E DV  ++ ++    RA 
Sbjct: 246 EGVVASLVTYTILIEWYASSER----IGEAEKVYEEMCERNVEMDVYVYTSMISWNCRAG 301

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
             + +    + M  +GI P   T+ +++  +C  G++E AE LL EM   GV  +   +N
Sbjct: 302 NVRRASALFDEMICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFN 361

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
                Y  R   + A +L   M+  G    ++ +YNIL      L+R +  + + N +  
Sbjct: 362 TMMDGYCKRGMMDEAFRLQDIMERKGF-EADVFTYNILASGLCKLHRYEEAKRVLNVMVE 420

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT 273
            G+ P++ +    I   C++    E  ++   + ++G++P  VT+ TL     +++ ++ 
Sbjct: 421 KGVAPNVVTCATFIEIYCQEGNLAEPERFLRNIEKRGVVPNIVTYNTLIDAYSKNEKVKQ 480

Query: 274 WRRLKKKLDEESI 286
              LK ++ E+ +
Sbjct: 481 AHXLKAEMVEKGL 493



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 96/204 (47%), Gaps = 1/204 (0%)

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           ++  V S +IV+ V  R  +   + + +N M  +G+ PTV TY++++         E  +
Sbjct: 178 VDIGVQSLTIVVDVLCRRGEVGRAKELMNEMAARGVVPTVFTYNTLLNACVVRKDREGVD 237

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           E+LG M R GV  S  TY    + Y   +    A K+Y +M E  + + +++ Y  +I  
Sbjct: 238 EILGLMEREGVVASLVTYTILIEWYASSERIGEAEKVYEEMCERNVEM-DVYVYTSMISW 296

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                 +     +++++   G+ P+  ++  LI G+C+  + + A     EM  KG+   
Sbjct: 297 NCRAGNVRRASALFDEMICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLN 356

Query: 255 KVTFETLYRGLIQSDMLRTWRRLK 278
            V F T+  G  +  M+    RL+
Sbjct: 357 VVIFNTMMDGYCKRGMMDEAFRLQ 380


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 142/286 (49%), Gaps = 12/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+   CK  RI  A+     M++RG +P++VTYN L+ G C              + 
Sbjct: 268 FNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFC----------LSNNVS 317

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F+ M  RG+EPDV +++++++ Y +      ++     ++ K + P +ATY+S++
Sbjct: 318 EARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLI 377

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+   +EL+ EM   G  P   TYN F   +   K    A+ L+RQ+ +    
Sbjct: 378 DGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQG--I 435

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ + Y++++  F    ++ +  E    +   G  P++ +YT++I+ LC+   + EA  
Sbjct: 436 WPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMT 495

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              +M +    P  VTFET+   L + +      +L+ ++ E  + 
Sbjct: 496 LLSKMDDNDCPPDAVTFETIIGALQERNETDKAEKLRLEMIERGLV 541



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 135/267 (50%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G CK  +   A + L +M E  V PN++TY+ +++G+C+          ++ I 
Sbjct: 163 YGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCK----------DRLIA 212

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F  +  RGI  DV +++ ++H      Q + +   L  M    I P   T++ +V
Sbjct: 213 DALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILV 272

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GRI +A+ +   M++ G  P   TYN   + +    + + A +L+ +M + GL 
Sbjct: 273 DALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGL- 331

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN+LI  +  ++ +D    ++ +++   L P+L +Y  LI GLC+  +     +
Sbjct: 332 EPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQE 391

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
              EM ++G  P  VT+        +S
Sbjct: 392 LVDEMCDRGQSPDIVTYNIFLDAFCKS 418



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 121/279 (43%), Gaps = 11/279 (3%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T LI  +C    +  A   LG +++ G +PN+VT+N L+NG C    +  +  F      
Sbjct: 94  TILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRL---- 149

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
                 ++  +G   D  S+  +++   +  Q + +L  L  M+E  + P + TYS+V+ 
Sbjct: 150 ------DLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVID 203

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC    I DA  L   +   G+      YN              A +L   M   G   
Sbjct: 204 GLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVR-GNIN 262

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+ +++NIL+       R+   + ++  +   G  PD+ +Y  L+ G C      EA + 
Sbjct: 263 PDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEAREL 322

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           F  M+++GL P  + +  L  G  + DM+     L K++
Sbjct: 323 FNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEI 361



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 110/245 (44%), Gaps = 31/245 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G+C  N +  A      M++RG+EP+V+ YNVL+NG C+   +  +    K IR
Sbjct: 303 YNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIR 362

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVY--SRAHQ 94
                                      +++ DEM  RG  PD+ +++I L  +  S+ ++
Sbjct: 363 CKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYE 422

Query: 95  PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
             +SL +      +GI P    Y  +V+  C   +++ AEE L  ++ +G CP+  TY  
Sbjct: 423 KAISLFR---QIVQGIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTI 479

Query: 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
                      + AM L  +M +D  C P+  ++  +IG     N  D   ++  ++   
Sbjct: 480 MINALCKDCSFDEAMTLLSKM-DDNDCPPDAVTFETIIGALQERNETDKAEKLRLEMIER 538

Query: 215 GLGPD 219
           GL  D
Sbjct: 539 GLVND 543



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 101/251 (40%), Gaps = 38/251 (15%)

Query: 50  LHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG 109
           LHP +    T+ +    F+ M  +   P +  F  +L    R      ++   + +  KG
Sbjct: 28  LHPPKF--HTVDDTLLSFNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKG 85

Query: 110 ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF-------------- 155
           I P++AT + ++ C C    +  A  LLG +++ G  P+  T+N                
Sbjct: 86  ITPSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAM 145

Query: 156 ------------FKEYRGRKDANG---------AMKLYRQMKEDGLCVPNMHSYNILIGM 194
                         E+      NG         A++L ++M+ED L  PN+ +Y+ +I  
Sbjct: 146 AFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEED-LVRPNLITYSTVIDG 204

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                 +     +++ V   G+  D+ +Y  LIHG C   +W+EA +    M+   + P 
Sbjct: 205 LCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPD 264

Query: 255 KVTFETLYRGL 265
             TF  L   L
Sbjct: 265 DYTFNILVDAL 275



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 69/153 (45%), Gaps = 20/153 (13%)

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
           ++LLG +VR G  P+A                   + L+ Q+   G+  P++ +  ILI 
Sbjct: 59  DKLLGAIVRMGHYPTA-------------------ISLFSQLHSKGI-TPSIATLTILIN 98

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
            +     +     +   +   G  P++ ++  LI+G C      +A  + ++++ KG   
Sbjct: 99  CYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPL 158

Query: 254 QKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            + ++ +L  GL ++   R   +L +K++E+ +
Sbjct: 159 DEFSYGSLINGLCKNGQTRDALQLLQKMEEDLV 191



 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY  ++  +CK  ++ +AE  L  ++  G  PNV TY +++N +C+  S           
Sbjct: 441 MYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFD--------- 491

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVL 86
             A  +  +M      PD  +F  ++
Sbjct: 492 -EAMTLLSKMDDNDCPPDAVTFETII 516


>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 145/290 (50%), Gaps = 24/290 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G CKI     A   L +M++R + PNVV YN +L+G+C+R            + 
Sbjct: 183 YGALVNGLCKIGDTSGALECLKKMVKRNLGPNVVVYNAILDGLCKRG----------LVG 232

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLH-VYSRAHQPQLSLDKLNFM-KEKGICPTVATYSS 119
            A  +  EM V  +EP+V +++ ++  +       +  +   N M  EKGI P V T+S 
Sbjct: 233 EALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDVQTFSI 292

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +V   C  G +  AE ++G MVR GV P+  TYN     Y  R     AM+++  M  +G
Sbjct: 293 LVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVREG 352

Query: 180 -LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
             C+P++ ++N LI  +  +  +D    + +++ G GL PD+ ++T LI G CE +K   
Sbjct: 353 EGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGFCEVKKPLA 412

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
           A + F  M E G +P   T   +  GL     L+ W      LD E++T 
Sbjct: 413 ARELFFTMKEHGQVPNLQTCAVVLDGL-----LKCW------LDSEAVTL 451



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 135/280 (48%), Gaps = 13/280 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +++ G CK   +  A   L EM    VEPNVVTYN L+ G+C               
Sbjct: 217 VYNAILDGLCKRGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFG---------GW 267

Query: 61  RNAEKVFDEMRV-RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           R    +F+EM   +GI PDV +FSI++  + +      +   + FM   G+ P V TY+S
Sbjct: 268 REGVGLFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNS 327

Query: 120 VVKCLCSCGRIEDAEELLGEMVR--NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           ++   C   ++E+A  + G MVR   G  PS  T+N     +   K+ + AM L  +M  
Sbjct: 328 LIAGYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVG 387

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            GL  P++ ++  LIG F  + +    RE++  +K  G  P+L +  +++ GL +     
Sbjct: 388 KGL-DPDVFTWTSLIGGFCEVKKPLAARELFFTMKEHGQVPNLQTCAVVLDGLLKCWLDS 446

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           EA   F  M++ GL    V +  +  G+ +   L   R+L
Sbjct: 447 EAVTLFRAMMKSGLDLDIVIYNIMLDGMCKMGKLNDARKL 486



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 141/284 (49%), Gaps = 12/284 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKTI 60
           ++ L+ G+CK   +  AE  +G M+  GVEPNVVTYN L+ G C R+ +  + R F   +
Sbjct: 290 FSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMV 349

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R  E         G  P V + + ++H + +  +   ++  L+ M  KG+ P V T++S+
Sbjct: 350 REGE---------GCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSL 400

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C   +   A EL   M  +G  P+ +T              + A+ L+R M + GL
Sbjct: 401 IGGFCEVKKPLAARELFFTMKEHGQVPNLQTCAVVLDGLLKCWLDSEAVTLFRAMMKSGL 460

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            + ++  YNI++     + +++  R++ + V   GL  D  +Y ++I GLC +    +A 
Sbjct: 461 DL-DIVIYNIMLDGMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAE 519

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS-DMLRTWRRLKKKLDE 283
           +   +M E G  P K ++    +GL++  D+ R+ + L+   D+
Sbjct: 520 ELLRKMKENGCPPNKCSYNVFVQGLLRKYDIARSRKYLQIMKDK 563



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 136/297 (45%), Gaps = 24/297 (8%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           C + +  +    LG M + G+EP +VT N ++NG+C           E  + +A  + ++
Sbjct: 121 CHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLC----------IEGDVNHALWLVEK 170

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           M   G   +  ++  +++   +      +L+ L  M ++ + P V  Y++++  LC  G 
Sbjct: 171 MENLGYHCNARTYGALVNGLCKIGDTSGALECLKKMVKRNLGPNVVVYNAILDGLCKRGL 230

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFK----EYRGRKDANGAMKLYRQMKEDGLCVPNM 185
           + +A  LL EM    V P+  TYNC  +    E+ G ++  G   L+ +M  +   VP++
Sbjct: 231 VGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVG---LFNEMVAEKGIVPDV 287

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
            +++IL+  F     +     +   +   G+ P++ +Y  LI G C + + +EA + F  
Sbjct: 288 QTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGL 347

Query: 246 MIE--KGLLPQKVTFETLYRGL-----IQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
           M+   +G LP  VT  +L  G      +   M      + K LD +  T+ S    +
Sbjct: 348 MVREGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGF 404



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 115/243 (47%), Gaps = 14/243 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + SLI+GWCK+  +D A   L EM+ +G++P+V T+  L+ G C            K   
Sbjct: 362 HNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGFCEV----------KKPL 411

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F  M+  G  P++ + ++VL    +      ++     M + G+   +  Y+ ++
Sbjct: 412 AARELFFTMKEHGQVPNLQTCAVVLDGLLKCWLDSEAVTLFRAMMKSGLDLDIVIYNIML 471

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G++ DA +LL  ++  G+   + TYN   K        + A +L R+MKE+G C
Sbjct: 472 DGMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAEELLRKMKENG-C 530

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC---EKQKWKE 238
            PN  SYN+ +   +    +   R+    +K  G   D  +  +LI  L    E + +KE
Sbjct: 531 PPNKCSYNVFVQGLLRKYDIARSRKYLQIMKDKGFPVDATTAELLIRFLSANEEDKSFKE 590

Query: 239 ACQ 241
             Q
Sbjct: 591 FPQ 593



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 3/196 (1%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           DV + +I ++      +  L    L  M + G+ PT+ T +++V  LC  G +  A  L+
Sbjct: 109 DVCTLNIAINCLCHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLV 168

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            +M   G   +A TY           D +GA++  ++M +  L  PN+  YN ++     
Sbjct: 169 EKMENLGYHCNARTYGALVNGLCKIGDTSGALECLKKMVKRNLG-PNVVVYNAILDGLCK 227

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC-EKQKWKEACQYFVEMI-EKGLLPQK 255
              +     + +++    + P++ +Y  LI GLC E   W+E    F EM+ EKG++P  
Sbjct: 228 RGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDV 287

Query: 256 VTFETLYRGLIQSDML 271
            TF  L  G  +  +L
Sbjct: 288 QTFSILVDGFCKEGLL 303



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 11/121 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  ++ G CK+ +++ A + L  ++ +G++ +  TYN+++ G+CR          E  +
Sbjct: 466 IYNIMLDGMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCR----------EGLL 515

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +AE++  +M+  G  P+  S+++ +    R +    S   L  MK+KG  P  AT + +
Sbjct: 516 DDAEELLRKMKENGCPPNKCSYNVFVQGLLRKYDIARSRKYLQIMKDKGF-PVDATTAEL 574

Query: 121 V 121
           +
Sbjct: 575 L 575


>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Brachypodium distachyon]
          Length = 496

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 148/299 (49%), Gaps = 30/299 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L  GWC++     A   L +M E G+ P   TYNV+L G  R   L           
Sbjct: 207 YNTLADGWCRVKDTSRALDLLRQMAESGIAPTKTTYNVILKGFFRAGQLQ---------- 256

Query: 62  NAEKVFDEMRVRG-----IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           +A   F +M+ RG      +PDV S++ ++H    A Q   +    + M ++G  PT+AT
Sbjct: 257 HAWNFFLQMKKRGSKDENCKPDVVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCPPTIAT 316

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+++++ +C  G +EDA  +  +M+R    P+  TY    +        + AMKL  +MK
Sbjct: 317 YNALIQVICKKGNVEDAVTVFDDMIRKDYIPNVVTYTVLIRGLCHVGKIDRAMKLMERMK 376

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV-KGSGLGPDLDSYTMLIHGLCEKQK 235
            +G C P + +YN+LI        MD    ++  + KG    P+ D+Y ++I  +  +++
Sbjct: 377 NEG-CEPVVQTYNVLIRYSFEEGEMDKALHLFERMSKGEECLPNQDTYNIVISAMFVRKR 435

Query: 236 WKE---ACQYFVEMIEKGLLPQKVTFETLYRGL-------IQSDMLR---TWRRLKKKL 281
            ++   A +  +EM+E+G LP++     +  GL       +  D+LR    +RRL++++
Sbjct: 436 AEDMAIAARMVMEMVERGYLPRRFMLNRVLNGLMLTGNQQLSRDLLRMQEKYRRLRREI 494



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 9/220 (4%)

Query: 54  ERFEKTIRN---AEKVFDEM-RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG 109
           ERF  + R    A ++F  + R   +  D+  F+ +L    ++     +   +  + E+ 
Sbjct: 141 ERFAASQRRPDIAVRLFLSLHRSHRVAQDLPLFNSLLDALGKSRHASKAASLVRAL-ERR 199

Query: 110 ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAM 169
             P V TY+++    C       A +LL +M  +G+ P+  TYN   K +        A 
Sbjct: 200 FPPDVVTYNTLADGWCRVKDTSRALDLLRQMAESGIAPTKTTYNVILKGFFRAGQLQHAW 259

Query: 170 KLYRQMKEDGL----CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
             + QMK+ G     C P++ SY  +I       ++D  R++++++   G  P + +Y  
Sbjct: 260 NFFLQMKKRGSKDENCKPDVVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCPPTIATYNA 319

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           LI  +C+K   ++A   F +MI K  +P  VT+  L RGL
Sbjct: 320 LIQVICKKGNVEDAVTVFDDMIRKDYIPNVVTYTVLIRGL 359


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 143/299 (47%), Gaps = 15/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G C    +D A   L EM E G+EPNVV Y+ LL G C+      + R+E    
Sbjct: 151 YGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCK------AGRWE---- 200

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              KVF+EM  RGIEPDV  ++ ++    R  + + +   ++ M E+G+ P V TY+ ++
Sbjct: 201 CVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLI 260

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM-KEDGL 180
             +C  G +++A  L   M+  GV   A TYN       G  + + AM L  +M   + +
Sbjct: 261 NSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETM 320

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+ ++N +I       RM    ++ + +  +G   +L ++ +LI GL    K K+A 
Sbjct: 321 VEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAM 380

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
           +   EM   GL P   T+  L  G  +   +     L  K+  + I    E +  H+ P
Sbjct: 381 ELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGI----EPELVHYIP 435



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 142/277 (51%), Gaps = 13/277 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+ L+ G+CK  R +   +   EM  RG+EP+VV Y  L++ +CR          E  +
Sbjct: 185 VYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCR----------EGKV 234

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A +V D+M  RG+EP+V +++++++   +    + ++   N M EKG+     TY+++
Sbjct: 235 KKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTL 294

Query: 121 VKCLCSCGRIEDAEELLGEMVRNG--VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +  L     +++A  LL EM+     V P+  T+N              A ++   M E+
Sbjct: 295 ITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAEN 354

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G C  N+ ++N+LIG  + ++++    E+ +++  SGL PD  +Y++LI+G C+  +   
Sbjct: 355 G-CACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDR 413

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           A     +M   G+ P+ V +  L   L +  M+   R
Sbjct: 414 AESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQAR 450



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 149/339 (43%), Gaps = 52/339 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT LI   C+  ++  A + + +M+ERG+EPNVVTYNVL+N +C+          E ++
Sbjct: 220 MYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCK----------EGSV 269

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFM--KEKGICPTVATYS 118
           + A  + + M  +G+  D  +++ ++   S   +   ++  L  M   E  + P V T++
Sbjct: 270 KEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFN 329

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           SV+  LC  GR+  A ++   M  NG   +  T+N              AM+L  +M   
Sbjct: 330 SVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASS 389

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP-------------------- 218
           GL  P+  +Y+ILI  F  + ++D    + + ++  G+ P                    
Sbjct: 390 GL-EPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQ 448

Query: 219 --------------DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
                         D+ +Y+ +IHG C  +  K A ++   M+++GL+P  VT+  L   
Sbjct: 449 ARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINM 508

Query: 265 LIQSDMLRTWRRLKKKLDEESI-----TFGSEFQNYHFK 298
              S  L    R+ K++           F S  + Y  K
Sbjct: 509 FANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAK 547



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 137/302 (45%), Gaps = 18/302 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + S+I+G CK  R+  A +    M E G   N+VT+N+L+ G+ R   +H        ++
Sbjct: 328 FNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLR---VH-------KVK 377

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ DEM   G+EPD  ++SI+++ + +  Q   +   L+ M+  GI P +  Y  ++
Sbjct: 378 KAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLL 437

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCP-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             LC  G +E A     EM +N  C      Y+         +D   A +  + M ++GL
Sbjct: 438 AALCEQGMMEQARNFFDEMHKN--CKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGL 495

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +P+  +Y++LI MF     +     +   +  SG  PD+  +  LI G   K   ++  
Sbjct: 496 -IPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVL 554

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSD----MLRTWRRLKKKLDEESITFGSEFQNYH 296
           +   EM  K +        T+Y  L+ ++    +L++      ++ + ++    E  N  
Sbjct: 555 ELIREMTAKDIALDSKIISTIYTCLVANNEGKALLQSVPGFDTEVSKGAVISSHELTNML 614

Query: 297 FK 298
            K
Sbjct: 615 HK 616



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 95/183 (51%), Gaps = 1/183 (0%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           PT  +Y+++++ LC+  R   A  LL +M  +GV P   TY    +      D + A++L
Sbjct: 111 PTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVEL 170

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
            R+M E G+  PN+  Y+ L+  +    R + V +++ ++ G G+ PD+  YT LI  LC
Sbjct: 171 LREMCESGI-EPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLC 229

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSE 291
            + K K+A Q   +M+E+GL P  VT+  L   + +   ++    L+  + E+ +   + 
Sbjct: 230 REGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAV 289

Query: 292 FQN 294
             N
Sbjct: 290 TYN 292



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 107/233 (45%), Gaps = 11/233 (4%)

Query: 33  NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92
           + V+YN +L  +CR+     +  F   +   E            P   S++ ++      
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLRVMAHET----------RPTAVSYTTLMRALCAE 126

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
            +   ++  L  M+  G+ P V TY ++++ LC    ++ A ELL EM  +G+ P+   Y
Sbjct: 127 RRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVY 186

Query: 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
           +C  + Y          K++ +M   G+  P++  Y  LI       ++    ++ + + 
Sbjct: 187 SCLLQGYCKAGRWECVSKVFEEMSGRGI-EPDVVMYTGLIDSLCREGKVKKATQVMDKMM 245

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
             GL P++ +Y +LI+ +C++   KEA      M+EKG+    VT+ TL  GL
Sbjct: 246 ERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGL 298



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 113/245 (46%), Gaps = 21/245 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G+CK+ ++D AE  L +M   G+EP +V Y  LL  +C +  +  +  F     
Sbjct: 398 YSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNF----- 452

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                FDEM  +  + DV ++S ++H   R    + + + L  M ++G+ P   TYS ++
Sbjct: 453 -----FDEMH-KNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLI 506

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               + G +  AE +L +M  +G  P    ++   K Y  + D    ++L R+M    + 
Sbjct: 507 NMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMTAKDIA 566

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKG----SGLGPDLDSY--TMLIHGLCEKQK 235
           + +     I+  ++  L   +  + +   V G       G  + S+  T ++H LC K +
Sbjct: 567 LDS----KIISTIYTCLVANNEGKALLQSVPGFDTEVSKGAVISSHELTNMLHKLCNKVE 622

Query: 236 WKEAC 240
              AC
Sbjct: 623 PAVAC 627


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 138/289 (47%), Gaps = 11/289 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI+  C+  ++  A   L +M+ RG  P+VVTYN+LL   C+           +  R
Sbjct: 170 YNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCK----------GRGYR 219

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D MR  G  P+  ++++++           +L+ L  +   G  P+   Y++V+
Sbjct: 220 QAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVL 279

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LCS  R  DA+EL+ EM+R    P+  T+N        +     A++L  +M + G C
Sbjct: 280 KGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHG-C 338

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+ +YN +I        +D    + + +K  G  PD+ +Y  L+ GLC   +W +A +
Sbjct: 339 TANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEE 398

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
               M + G LP  VTF TL   L Q  ++     + K++ ++  T  S
Sbjct: 399 LMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNS 447



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 127/292 (43%), Gaps = 18/292 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +IY  C+   +  A + L +M + G   N+VTYN ++NG+C           ++ + 
Sbjct: 310 FNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCE----------QRNVD 359

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +M+  G +PD+ +++ +L     A Q   + + ++ M + G  P   T+++++
Sbjct: 360 GAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLI 419

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G + DA E+  +M   G  P++ TY+            + A++L+ +M   G  
Sbjct: 420 GFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFN 479

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVK---GSGLGPDLDSYTMLIHGLCEKQKWKE 238
              ++       +   LN  D + E    V+    SG+ P    Y  ++ GLC   K + 
Sbjct: 480 PDKIYQL-----LAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEF 534

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
           A      M+  G +P  +T+  L  GL     L   R L  KL    +   S
Sbjct: 535 AIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKLCSRDVLVNS 586



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 92/240 (38%), Gaps = 65/240 (27%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGE-----------MVRNGVC-------------- 146
           P  A  + +V+ LC  GR +DAE ++G             + +G C              
Sbjct: 101 PDAALANRLVRDLCRRGRPDDAERVVGACGPAATVVAYGALTDGYCRAGRLGDARRVVGG 160

Query: 147 ----PSAETYNCFFKEY--RGR-KDA--------------------------------NG 167
               P+A TYN        RG+ +DA                                  
Sbjct: 161 MPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQ 220

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           AM+L   M+ +G C PN  +YN+L+        +D   E+  ++   G  P   +Y  ++
Sbjct: 221 AMELIDLMRAEG-CTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVL 279

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            GLC  ++W +A +   EM+ +   P + TF  +   L +  +L+   +L +K+ +   T
Sbjct: 280 KGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCT 339


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 138/263 (52%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+ K   I+ A R   EMI RG++ NVVTYN ++ G+ +   +           
Sbjct: 349 YTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEM----------A 398

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F+EM + G+EPD  ++++++  Y ++H    + + L  MK + + P+  TYS ++
Sbjct: 399 KAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLI 458

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    ++ A E+L +M+RNGV P+   Y    K Y        A++L + M  +G+ 
Sbjct: 459 SGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGV- 517

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++  YN LI       +++  + +  D+   G+ P+  +Y   I+   +  + + A +
Sbjct: 518 LPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAER 577

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
           YF +M+  G++P  V +  L +G
Sbjct: 578 YFKDMLSSGIVPNNVIYTILIKG 600



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 138/293 (47%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G C+  +++ A+  L +M E+G++PN  TY   +N   +   +  +ER+     
Sbjct: 524 YNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERY----- 578

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                F +M   GI P+   ++I++  +        +L     M EKG+ P +  YS+++
Sbjct: 579 -----FKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAII 633

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G+ ++A  +  + ++ GV P    YN     +    D   A +LY +M  +G+ 
Sbjct: 634 HSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGIN 693

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+  YN LI     L  +   RE++++++   L PD+ +Y+ +I G C+     EA +
Sbjct: 694 -PNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFK 752

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
            F EMI KG+ P    +  L  G  +   L     L  +  ++S+   S F +
Sbjct: 753 LFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNS 805



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 141/287 (49%), Gaps = 11/287 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY +LI  + + +R +MA   L  MI  GV P++  YN L+ G+CR           K +
Sbjct: 488 MYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCR----------AKKV 537

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+ +  +M  +GI+P+  ++   +++YS++ + Q++      M   GI P    Y+ +
Sbjct: 538 EEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTIL 597

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +K  C  G   +A      M+  G+ P    Y+              AM ++ +  + G+
Sbjct: 598 IKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGV 657

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VP++  YN LI  F     ++   ++++++  +G+ P++  Y  LI+GLC+  +  +A 
Sbjct: 658 -VPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKAR 716

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           + F E+ EK L+P  VT+ T+  G  +S  L    +L  ++  + I+
Sbjct: 717 ELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGIS 763



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 136/261 (52%), Gaps = 14/261 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I+   K  +   A     + ++ GV P+V  YN L++G C+          E  I 
Sbjct: 629 YSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCK----------EGDIE 678

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +++DEM   GI P++  ++ +++   +  +   + +  + ++EK + P V TYS+++
Sbjct: 679 KASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTII 738

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK-DANGAMKLYRQMKEDGL 180
              C  G + +A +L  EM+  G+ P    Y C   +  G++ +   A+ L+ + ++   
Sbjct: 739 DGYCKSGNLTEAFKLFDEMISKGISPDGYIY-CILIDGCGKEGNLEKALSLFHEAQQKS- 796

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            V ++ ++N LI  F    ++   RE+++D+    L P++ +YT+LI    + +  +EA 
Sbjct: 797 -VGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAE 855

Query: 241 QYFVEMIEKGLLPQKVTFETL 261
           Q F++M  + ++P  +T+ +L
Sbjct: 856 QLFLDMETRNIIPNTLTYTSL 876



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 127/266 (47%), Gaps = 12/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I   CK+  +   +  L EM E+  +PN+ TYN  + G+C+  ++  +   +K   
Sbjct: 245 YTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKL-- 301

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                   M  +G+ PD  ++++++  + +  + + +      M   G+ P   TY++++
Sbjct: 302 --------MMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALI 353

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G IE+A  +  EM+  G+  +  TYN          +   AM L+ +M   GL 
Sbjct: 354 DGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGL- 412

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN+LI  ++  + M    E+  ++K   L P   +Y++LI GLC     ++A +
Sbjct: 413 EPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANE 472

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +MI  G+ P    + TL +  +Q
Sbjct: 473 VLDQMIRNGVKPNVFMYGTLIKAYVQ 498



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 120/269 (44%), Gaps = 12/269 (4%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +L+    K N + +  +  G M+E  + P+V TY  ++   C+             +   
Sbjct: 212 NLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGD----------VIKG 261

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
           + V  EM  +  +P++ +++  +    +      +L+    M EKG+ P   TY+ +V  
Sbjct: 262 KMVLSEME-KECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDG 320

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C   R ++A+ +   M  +G+ P+  TY      +    +   A+++  +M   GL + 
Sbjct: 321 FCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKL- 379

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N+ +YN +IG       M     ++N++  +GL PD  +Y +LI G  +     +AC+  
Sbjct: 380 NVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELL 439

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
            EM  + L P   T+  L  GL  S  L+
Sbjct: 440 AEMKARKLTPSPFTYSVLISGLCHSSDLQ 468



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 8/183 (4%)

Query: 108 KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA-N 166
           +G  PT+   +++++ L     +    ++ G MV   + P   TY    K +    D   
Sbjct: 201 EGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIK 260

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
           G M L    KE   C PN+ +YN  IG       +D   E+   +   GLGPD  +YT+L
Sbjct: 261 GKMVLSEMEKE---CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLL 317

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           + G C++++ KEA   F  M   GL P + T+  L  G I+   +    R+K    +E I
Sbjct: 318 VDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIK----DEMI 373

Query: 287 TFG 289
           T G
Sbjct: 374 TRG 376



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 119/285 (41%), Gaps = 33/285 (11%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-----ERF 56
            Y+++I G+CK   +  A +   EMI +G+ P+   Y +L++G  +  +L  +     E  
Sbjct: 734  YSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQ 793

Query: 57   EKTIRN-------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH---- 93
            +K++ +                   A ++FD+M  + + P++ +++I++  Y +A     
Sbjct: 794  QKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEE 853

Query: 94   QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
              QL LD    M+ + I P   TY+S++      G       L  +M   G+   A  Y 
Sbjct: 854  AEQLFLD----METRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYG 909

Query: 154  CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
                 Y     +  A+KL  +   +G+ + +   ++ LI       ++  V E+ +++  
Sbjct: 910  VMASAYCKEGKSLEALKLLNKSLVEGIKLED-DVFDALIFHLCKEKQISTVLELLSEMGK 968

Query: 214  SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
              L     +   L+ G  +     EA +    M   G +P  ++ 
Sbjct: 969  EELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVPTSLSL 1013


>gi|357114607|ref|XP_003559090.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 486

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 139/266 (52%), Gaps = 12/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ GW K   +        EM++ G +P++VTY ++++ +C+             + 
Sbjct: 209 YSILLEGWGKAPNLPKMREVYSEMLDAGCQPDIVTYGIMVDSLCKTGR----------VE 258

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V  +M  RG +P    +S+++H Y    + + ++     M++ GI P V  Y+++V
Sbjct: 259 EAVLVVQDMSSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDVVVYNALV 318

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   + E+A  ++ +M  +G+ P++ T+N    +       + A +++R+M +   C
Sbjct: 319 TAFCKVKKFENAFRVMDDMEGHGIAPNSRTWNIILNKLISLGKDDEAYRVFRRMIKR--C 376

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y ++I MF   + ++M  ++W  ++     P + ++++LI+GLC+K +  +AC 
Sbjct: 377 QPDSDTYTMMIKMFCENDNVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACV 436

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +MIEKG+ P   TF  L + L++
Sbjct: 437 LLEDMIEKGIRPPGSTFGKLRQLLLK 462



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 133/276 (48%), Gaps = 17/276 (6%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           + +  + D A      M + GV PN+  +N LL  +C+           K +R A+++FD
Sbjct: 147 YARAQKFDEAVYTFNIMEKYGVVPNLAAFNSLLGALCK----------SKNVRKAQEIFD 196

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
           +M  R   PD  ++SI+L  + +A       +  + M + G  P + TY  +V  LC  G
Sbjct: 197 KMNGR-FNPDAKTYSILLEGWGKAPNLPKMREVYSEMLDAGCQPDIVTYGIMVDSLCKTG 255

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           R+E+A  ++ +M   G  P+   Y+     Y        A+  +  M++DG+ VP++  Y
Sbjct: 256 RVEEAVLVVQDMSSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMEKDGI-VPDVVVY 314

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N L+  F  + + +    + +D++G G+ P+  ++ ++++ L    K  EA + F  MI+
Sbjct: 315 NALVTAFCKVKKFENAFRVMDDMEGHGIAPNSRTWNIILNKLISLGKDDEAYRVFRRMIK 374

Query: 249 KGLLPQKVTFETLYRGLIQSD----MLRTWRRLKKK 280
           +   P   T+  + +   ++D     L+ W+ ++ K
Sbjct: 375 R-CQPDSDTYTMMIKMFCENDNVEMALKVWKYMRLK 409



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 99/193 (51%), Gaps = 5/193 (2%)

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           MR  G+  +V +F I++  Y+RA +   ++   N M++ G+ P +A ++S++  LC    
Sbjct: 129 MRREGV-VNVETFGIIMRKYARAQKFDEAVYTFNIMEKYGVVPNLAAFNSLLGALCKSKN 187

Query: 130 IEDAEELLGEMVRNG-VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           +  A+E+  +M  NG   P A+TY+   + +    +     ++Y +M + G C P++ +Y
Sbjct: 188 VRKAQEIFDKM--NGRFNPDAKTYSILLEGWGKAPNLPKMREVYSEMLDAG-CQPDIVTY 244

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
            I++       R++    +  D+   G  P    Y++L+H    + + ++A   F++M +
Sbjct: 245 GIMVDSLCKTGRVEEAVLVVQDMSSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMEK 304

Query: 249 KGLLPQKVTFETL 261
            G++P  V +  L
Sbjct: 305 DGIVPDVVVYNAL 317



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 86/169 (50%), Gaps = 17/169 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +L+  +CK+ + + A R + +M   G+ PN  T+N++LN   +  SL   +      
Sbjct: 313 VYNALVTAFCKVKKFENAFRVMDDMEGHGIAPNSRTWNIILN---KLISLGKDD------ 363

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A +VF  M ++  +PD  ++++++ ++      +++L    +M+ K   P++ T+S +
Sbjct: 364 -EAYRVFRRM-IKRCQPDSDTYTMMIKMFCENDNVEMALKVWKYMRLKQFLPSMHTFSVL 421

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY----NCFFKEYRGRKDA 165
           +  LC  G +  A  LL +M+  G+ P   T+        KE  GRKD 
Sbjct: 422 INGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKE--GRKDV 468


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 134/265 (50%), Gaps = 12/265 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+ K +++D A + L  M+ +G EP  VTY  +++G C+             I 
Sbjct: 471 YTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKL----------DMIN 520

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A++V  +MR RG EP +  F+ +L  Y    + + +   L  M  +G  P V  Y+S++
Sbjct: 521 EAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLI 580

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L S GR+ +A  +   M+  G  P A TY    + +    +   A ++   M + G+ 
Sbjct: 581 DLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVG 640

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN L+  ++ L R+D    +++ +  SG+ P+  ++ +L+HGL +  K   A  
Sbjct: 641 -PDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFS 699

Query: 242 YFVEMIEKGLLPQK-VTFETLYRGL 265
            F EM+EK  +P   V++  L  GL
Sbjct: 700 LFKEMLEKDEVPPTLVSYTILIDGL 724



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 145/297 (48%), Gaps = 22/297 (7%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           SLI+  CK  ++D A      ++ + V  + V YN L++G C+             + + 
Sbjct: 234 SLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGR----------VDDG 283

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            K+  +M      PD+ +++I++  +SRA++   +L+    +   G  P  ATY+++++ 
Sbjct: 284 LKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQG 343

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           L    R+E+A+    E +         +Y    K     K  + A +L+ ++K  G C P
Sbjct: 344 LYDAQRMEEAKAFFDEAL------DVISYTTVIKGLADSKRIDEACELFEKLKTAG-CSP 396

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N+ +Y  +I   +   R++   + + D+ GS   P   +YT++I GLC+ Q   +AC+ F
Sbjct: 397 NVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVF 456

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGSEFQNY 295
            +M++KG +P  +T+ TL  G  ++  +   R+     L K  +  ++T+GS    +
Sbjct: 457 EQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGF 513



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 134/282 (47%), Gaps = 19/282 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTS+I+G+CK   +D   + L EM+  G  P+   Y VL++ +C+             +
Sbjct: 126 LYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGR----------V 175

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++F+ MR  G   D  +F  ++   S   +   + +    M E+G  P +    S+
Sbjct: 176 DEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSL 235

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE-DG 179
           +  LC  G++++A E+   +V   V  S   YN     Y      +  +KL  QM E D 
Sbjct: 236 IFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDN 295

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              P++ +YNIL+  F   NR+D   E++  +   G  P+  +YT +I GL + Q+ +EA
Sbjct: 296 F--PDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEA 353

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
             +F E ++       +++ T+ +GL  S  +     L +KL
Sbjct: 354 KAFFDEALD------VISYTTVIKGLADSKRIDEACELFEKL 389



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 131/286 (45%), Gaps = 12/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I G CK   +  A +   +M+++G  P+ +TY  L++G  + + +           
Sbjct: 436 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMD---------- 485

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ D M  +G EP   ++  ++H + +      + + +  M+E+G  P +  ++S++
Sbjct: 486 EARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLL 545

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               S GR E+A ++L EM   G  P    Y               A  ++  M E G C
Sbjct: 546 SYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKG-C 604

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y  +I  F  +  ++   EI   +  SG+GPD  +Y  L+ G  + ++  +A  
Sbjct: 605 APDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFG 664

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKKKLDEESI 286
            +  M+  G+ P  VTF  L  GL +     R +   K+ L+++ +
Sbjct: 665 VYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEV 710



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 133/299 (44%), Gaps = 26/299 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF--EKT 59
           Y S+++G+CK++ I+ A+  + +M ERG EP +  +  LL+    +     + +   E T
Sbjct: 506 YGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMT 565

Query: 60  IRN-----------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            R                        A  VFD M  +G  PD  ++  ++  +S+    +
Sbjct: 566 ARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVE 625

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + + L  M + G+ P    Y+S++       R++ A  +   MV +G+ P+A T+N   
Sbjct: 626 AAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLM 685

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A  L+++M E     P + SY ILI       R+      + ++   G+
Sbjct: 686 HGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGI 745

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT-W 274
            P+  +YT LI+ L +  +  EA +   +M++ G+ P    +  L  GLI S M+ T W
Sbjct: 746 IPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAW 804



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 11/262 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G     RID A     ++   G  PNVV Y  +++G+ +        R E  ++
Sbjct: 366 YTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAG------RIEDGLK 419

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N    F++M      P  T++++V+    +A     +      M +KG  P   TY++++
Sbjct: 420 N----FEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLI 475

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                  ++++A +LL  M+  G  P+A TY      +      N A ++  QM+E G C
Sbjct: 476 DGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERG-C 534

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P +  +  L+  +++  R +   ++  ++   G  PD+  YT LI  L    +  EA  
Sbjct: 535 EPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARH 594

Query: 242 YFVEMIEKGLLPQKVTFETLYR 263
            F  MIEKG  P  +T+ T+ +
Sbjct: 595 VFDSMIEKGCAPDALTYGTIIQ 616



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 124/260 (47%), Gaps = 12/260 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++ G CK  +ID A     EM   G EP +V+YN +++G+   AS+   +        A 
Sbjct: 26  VLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGL---ASIDKMDE-------AY 75

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           K F+ M   G EPDV +F+ ++H + +A QPQ+    LN    K   P V  Y+SV+   
Sbjct: 76  KFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLN-QALKRFRPDVFLYTSVIHGY 134

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G ++   ++L EM+  G  P A  Y             + A +L+ +M++ G C+ +
Sbjct: 135 CKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSG-CLGD 193

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
             ++  LI       ++D   E++ ++   G  P L+    LI  LC+  K  EA + + 
Sbjct: 194 YVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQ 253

Query: 245 EMIEKGLLPQKVTFETLYRG 264
            ++ K +   +V + +L  G
Sbjct: 254 TVVAKKVATSRVAYNSLMDG 273



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 119/280 (42%), Gaps = 12/280 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G   I+++D A +F   MI+ G EP+V+ +  L++G C+             + 
Sbjct: 58  YNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHML---LN 114

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K F         PDV  ++ V+H Y +A         L  M   G  P  A Y  ++
Sbjct: 115 QALKRF--------RPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLI 166

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+++A EL   M ++G      T+    +        + A +LYR+M E G  
Sbjct: 167 DPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGY- 225

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P +   + LI       ++D   EI+  V    +     +Y  L+ G C+  +  +  +
Sbjct: 226 EPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLK 285

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
             ++M+E    P   T+  L  G  +++ L     L K L
Sbjct: 286 LLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLL 325



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 12/200 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+ G+ K+ R+D A      M+  G++PN VT+NVL++G+ +           KT R
Sbjct: 646 YNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDG---------KTDR 696

Query: 62  NAEKVFDEMRVRG-IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            A  +F EM  +  + P + S++I++    +A +   +  +   M ++GI P   TY+S+
Sbjct: 697 -AFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSL 755

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L   GRI +A++L+ +MV+ GV P  + Y+            + A  ++++M + G 
Sbjct: 756 IYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRG- 814

Query: 181 CVPNMHSYNILIGMFMALNR 200
           C PN  +Y +L   F A  R
Sbjct: 815 CAPNEVTYKVLRRGFRAAGR 834



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 35/219 (15%)

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
           EM   G+ PDV + +IVL+   +A +   +++    M   G  PT+ +Y++V+  L S  
Sbjct: 10  EMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASID 69

Query: 129 RIEDAEELLGEMVRN--------------GVC--------------------PSAETYNC 154
           ++++A +    M+ N              G C                    P    Y  
Sbjct: 70  KMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDVFLYTS 129

Query: 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
               Y    D +   K+  +M   G C+P+  +Y +LI     L R+D   E++  ++ S
Sbjct: 130 VIHGYCKAGDLDTGFKILEEMLAAG-CIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKS 188

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
           G   D  ++  LI  L    K  EAC+ + EMIE+G  P
Sbjct: 189 GCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEP 227



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 2/164 (1%)

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           +LD L  M   G+ P V   + V+  LC   +I+ A EL  EM   G  P+  +YN    
Sbjct: 4   ALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVIS 63

Query: 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
                   + A K +  M ++G C P++ ++  LI  F    +  +   + N        
Sbjct: 64  GLASIDKMDEAYKFFNSMIDNG-CEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKR-FR 121

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           PD+  YT +IHG C+        +   EM+  G +P    +  L
Sbjct: 122 PDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVL 165



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G  K  R+  A     EMI+RG+ P   TY  L+  + +             I 
Sbjct: 717 YTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGR----------IP 766

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+K+ ++M   G+ PDV ++S ++     +     + D    M ++G  P   TY  + 
Sbjct: 767 EAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLR 826

Query: 122 KCLCSCGRIEDAEEL 136
           +   + GR  D E +
Sbjct: 827 RGFRAAGRALDLEAV 841



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 1/101 (0%)

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           A+   ++M   GL +P++ + NI++       ++D   E++ ++   G  P + SY  +I
Sbjct: 4   ALDCLKEMHTTGL-MPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVI 62

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            GL    K  EA ++F  MI+ G  P  + F TL  G  ++
Sbjct: 63  SGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKA 103



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 10/94 (10%)

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           M+   +   ++  +GL PD+ +  ++++GLC+ +K  +A + F+EM   G  P  V++ T
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 261 LYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           +  GL   D          K+DE    F S   N
Sbjct: 61  VISGLASID----------KMDEAYKFFNSMIDN 84


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 151/319 (47%), Gaps = 31/319 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTI 60
           Y +LI G+ K N+++ A R L  M  RG  P+VVTYN+++   C R  L  + E FE+ +
Sbjct: 141 YNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELL 200

Query: 61  RN------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           ++                        A K+ DEM  +G+EPD  +++ ++    +     
Sbjct: 201 KDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVD 260

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + + L  +  +G  P + TY+ +++ L S G+  + E+L+ EM+  G  P+  T++   
Sbjct: 261 KAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILI 320

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      A+ L R MKE GL  P+ + Y+ LI  F    R+D+  E    +   G 
Sbjct: 321 GTLCRDGKVEEAVNLLRSMKEKGL-KPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGC 379

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS-DMLRT-- 273
            PD+ +Y  ++ GLC   K  +A + F ++ E G  P   ++ TL+  L  S D  R   
Sbjct: 380 LPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALE 439

Query: 274 --WRRLKKKLDEESITFGS 290
              + L + +D + IT+ S
Sbjct: 440 MILKLLNQGIDPDEITYNS 458



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 120/264 (45%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK   +D A   L  +  RG +P+++TYN+LL  +  R              
Sbjct: 246 YNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWS---------- 295

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             EK+  EM   G +P+V + SI++    R  + + +++ L  MKEKG+ P    Y  ++
Sbjct: 296 EGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLI 355

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR++ A E L  M+ +G  P    YN           A+ A++++ ++ E G C
Sbjct: 356 AGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVG-C 414

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ SYN L     +        E+   +   G+ PD  +Y  LI  LC      EA +
Sbjct: 415 PPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIE 474

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
             V+M      P  V++  +  GL
Sbjct: 475 LLVDMQSGRYRPNVVSYNIILLGL 498



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 129/263 (49%), Gaps = 12/263 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T LI G+     I  A R + E++ER  +P+V  YN L++G  +   L           N
Sbjct: 108 TKLIKGFFNSRNIGKATRVM-EILERYGKPDVFAYNALISGFIKANQLE----------N 156

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A +V D M+ RG  PDV +++I++  +    +  L+L+    + +    PTV TY+ +++
Sbjct: 157 ANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIE 216

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
                G I+ A +LL EM+  G+ P   TYN   +        + A +L R +   G C 
Sbjct: 217 ATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRG-CK 275

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ +YNIL+   ++  +     ++ +++   G  P++ ++++LI  LC   K +EA   
Sbjct: 276 PDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNL 335

Query: 243 FVEMIEKGLLPQKVTFETLYRGL 265
              M EKGL P    ++ L  G 
Sbjct: 336 LRSMKEKGLKPDAYCYDPLIAGF 358



 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 11/132 (8%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           W   +R    E  L +++ +G++P+ +TYN L++ +CR          +  +  A ++  
Sbjct: 429 WSSGDRYRALEMIL-KLLNQGIDPDEITYNSLISCLCR----------DGMVDEAIELLV 477

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
           +M+     P+V S++I+L    + ++   +++ L  M EKG  P   TY  +++ +   G
Sbjct: 478 DMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSG 537

Query: 129 RIEDAEELLGEM 140
              +A EL   +
Sbjct: 538 LRAEAMELANSL 549


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 153/312 (49%), Gaps = 27/312 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y ++I GWCK+ R+D A +   EM+ +G V+P  V YN L+ G C +  L  +  +   +
Sbjct: 184 YGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRM 243

Query: 61  -------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                      A ++ +EM  +G+ PDV +++I+++ + +    
Sbjct: 244 VERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNV 303

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + +L+    M  +G+  TV TY++++  L   G++++ ++L  E VR G+ P    YN  
Sbjct: 304 KKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 363

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +    + + A ++  +M++  +  P+  +YN L+     L R+D  R++ +++   G
Sbjct: 364 INSHSTSGNIDRAFEIMGEMEKKRIA-PDDVTYNTLMRGLCLLGRVDEARKLIDEMTERG 422

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           + PDL +Y  LI G   K   K+A +   EM+ KG  P  +T+  L +GL ++       
Sbjct: 423 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 482

Query: 276 RLKKKLDEESIT 287
            + K++ E  IT
Sbjct: 483 NMVKEMVENGIT 494



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 142/307 (46%), Gaps = 52/307 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVE----------------------------- 31
           MY +LI G+C   ++D A  +   M+ERGV                              
Sbjct: 219 MYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEM 278

Query: 32  ------PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85
                 P+V TYN+L+NG C+          E  ++ A ++F+ M  RG+   V +++ +
Sbjct: 279 GGKGLAPDVFTYNILINGHCK----------EGNVKKALEIFENMSRRGVRATVVTYTAL 328

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           ++  S+  Q Q +    +    +GI P +  Y++++    + G I+ A E++GEM +  +
Sbjct: 329 IYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRI 388

Query: 146 CPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMD 202
            P   TYN   +     GR D   A KL  +M E G+  P++ +YN LI G  M  +  D
Sbjct: 389 APDDVTYNTLMRGLCLLGRVDE--ARKLIDEMTERGIQ-PDLVTYNTLISGYSMKGDVKD 445

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
            +R I N++   G  P L +Y  LI GLC+  +  +A     EM+E G+ P   T+ +L 
Sbjct: 446 ALR-IRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 504

Query: 263 RGLIQSD 269
            GL   D
Sbjct: 505 EGLTTED 511



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 100/220 (45%), Gaps = 10/220 (4%)

Query: 48  ASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE 107
           ASLHP      +        D  R+R +    T+F+I+L     A +P  +L+ L  M  
Sbjct: 84  ASLHPLLSALPSAPAFALFADMFRLR-LPLCTTTFNIMLRHLCSAGKPARALELLRQMPR 142

Query: 108 KGICPTVATYSSVVKCLCSCGRIEDAEELLGEM-VRNGVCPSAETYNCFFKEY--RGRKD 164
               P   TY++V+   CS GR++ A +++ EM  R G+ P+  TY      +   GR D
Sbjct: 143 ----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVD 198

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
              A+K++ +M   G   P    YN LIG +    ++D      + +   G+   + +Y 
Sbjct: 199 E--AVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYN 256

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           +L+H L    +  EA +   EM  KGL P   T+  L  G
Sbjct: 257 LLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILING 296


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 128/252 (50%), Gaps = 11/252 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T+LI+G+CK   +  A      M  R ++P+VVTYN L++G C+   +            
Sbjct: 473 TTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEME----------K 522

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A++++ +M  R I P   SFSI+++ +        +    + MKEKGI PT+ T ++++K
Sbjct: 523 AKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIK 582

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
                G +  A + L  M+  GV P   TYN     +   ++ + A  L   M+E GL +
Sbjct: 583 GYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGL-L 641

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN+ +YN ++G F    RM     + + +   G+ PD  +YT LI+G   K   KEA + 
Sbjct: 642 PNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRV 701

Query: 243 FVEMIEKGLLPQ 254
             EM+++G +P 
Sbjct: 702 HDEMLQRGFVPD 713



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 147/300 (49%), Gaps = 16/300 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G+C+ + +  A +   EM+ERG   +VVTYN LLNG+CR           K +
Sbjct: 401 IYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCR----------GKML 450

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A+++F EM  RG+ PD  + + ++H Y +      +L     M  + + P V TY+++
Sbjct: 451 DDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTL 510

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G +E A+EL  +M+   + PS  +++     +      + A +L+ +MKE G+
Sbjct: 511 MDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGI 570

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P + + N +I  ++    +    +  N +   G+ PD  +Y  LI+   +++ +  A 
Sbjct: 571 -KPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAF 629

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL-----IQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
                M E+GLLP  VT+  +  G      +Q   +   + + K ++ +  T+ S    Y
Sbjct: 630 FLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGY 689



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 141/305 (46%), Gaps = 46/305 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK    + A+R L EM+  G+ PN  T+N +L   CR+          + + 
Sbjct: 297 YNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRK----------EDVW 346

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP--------- 112
            AE+VF+EM  RG+ PD+ SFS ++ V+SR  +   +L     MK  G+ P         
Sbjct: 347 EAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILI 406

Query: 113 --------------------------TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                                      V TY++++  LC    ++DA+EL  EMV  GV 
Sbjct: 407 NGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVF 466

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P   T       Y    +   A+ L+  M    L  P++ +YN L+  F  +  M+  +E
Sbjct: 467 PDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSL-KPDVVTYNTLMDGFCKVGEMEKAKE 525

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +W D+    + P   S+++LI+G C      EA + + EM EKG+ P  VT  T+ +G +
Sbjct: 526 LWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYL 585

Query: 267 QSDML 271
           ++  L
Sbjct: 586 RAGNL 590



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 144/283 (50%), Gaps = 11/283 (3%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +L+    K+  +D+A +   + ++ G   NV T N+++N +C+   L           N 
Sbjct: 194 ALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLD----------NV 243

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
                EM  +G+  D+ +++ +++ Y R      +   ++ M  KG+ P + TY++++  
Sbjct: 244 GVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALING 303

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC  G  E A+ +L EM+  G+CP+A T+N    E   ++D   A +++ +M + G+ VP
Sbjct: 304 LCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGV-VP 362

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++ S++ ++G+F     +      +  +KG GL PD   YT+LI+G C       A +  
Sbjct: 363 DLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMR 422

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            EM+E+G +   VT+ TL  GL +  ML     L K++ E  +
Sbjct: 423 NEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGV 465



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 127/288 (44%), Gaps = 30/288 (10%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF-------- 56
           ++   CK  ++D    +L EM E+GV  ++VTYN L+N  CRR  +  SE F        
Sbjct: 230 MVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLV--SEAFGLVDCMAG 287

Query: 57  -------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
                              E +   A++V DEM   G+ P+  +F+ +L    R      
Sbjct: 288 KGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWE 347

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           +    N M ++G+ P + ++SS+V      G +  A     +M   G+ P    Y     
Sbjct: 348 AERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILIN 407

Query: 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
            Y    D +GA+K+  +M E G CV ++ +YN L+        +D   E++ ++   G+ 
Sbjct: 408 GYCRNDDVSGALKMRNEMVERG-CVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVF 466

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           PD  + T LIHG C+     +A   F  M  + L P  VT+ TL  G 
Sbjct: 467 PDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGF 514



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 93/183 (50%), Gaps = 11/183 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ LI G+C +  +  A R   EM E+G++P +VT N ++ G  R  +L  +  F  T  
Sbjct: 542 FSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNT-- 599

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                   M   G+ PD  +++ +++ + +      +   +N M+E+G+ P + TY++++
Sbjct: 600 --------MISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAIL 651

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 GR+++AE +L +M+  G+ P   TY      Y  + +   A +++ +M + G  
Sbjct: 652 GGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGF- 710

Query: 182 VPN 184
           VP+
Sbjct: 711 VPD 713



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 90/204 (44%), Gaps = 1/204 (0%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           + +R   + F  +R RG    + + + +L    +     L+        + G    V T 
Sbjct: 168 RKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTL 227

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + +V  LC  G++++    L EM   GV     TYN     Y  R   + A  L   M  
Sbjct: 228 NIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAG 287

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            GL  P + +YN LI         +  + + +++ G GL P+  ++  ++   C K+   
Sbjct: 288 KGL-KPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVW 346

Query: 238 EACQYFVEMIEKGLLPQKVTFETL 261
           EA + F EM+++G++P  ++F ++
Sbjct: 347 EAERVFNEMLQRGVVPDLISFSSI 370



 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/181 (18%), Positives = 78/181 (43%), Gaps = 26/181 (14%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET-------------------- 151
           P  +  ++++  L    ++ +A+ LL  ++R       E                     
Sbjct: 97  PNPSIIATLIHFLVQSKKLPEAQSLLLRIIRKSGVSHVEVIDSLISTSSSNLNSNQNVVV 156

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           ++   + Y   +      + ++ +++ G CV ++++ N L+G  + +  +D+  +++ D 
Sbjct: 157 FDLLIRTYVQARKLREGSEAFQLLRKRGFCV-SINACNALLGAIVKVGWVDLAWKVYEDF 215

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY-----RGLI 266
             SG   ++ +  ++++ LC+  K      Y  EM EKG+    VT+ TL      RGL+
Sbjct: 216 VKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLV 275

Query: 267 Q 267
            
Sbjct: 276 S 276


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 149/309 (48%), Gaps = 19/309 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G CK  R+D A   L EM+ +GV  NVVTY VL++G+C+          E+ + 
Sbjct: 331 YTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCK----------ERKVA 380

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE V   M   G+  +   ++ ++H +      + +L  L+ MK KG+   ++ Y +++
Sbjct: 381 EAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALI 440

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC+  ++++A+ LL +M  +G+ P+   Y               A+ + +++ + G  
Sbjct: 441 QGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGF- 499

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  LI        +D     +N ++  GL P++ +YT L+ GLC+     EA Q
Sbjct: 500 QPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQ 559

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT--------FGSEFQ 293
            F EM+ KG+   KV +  L  G ++   L     LK K+ +  +         F S F 
Sbjct: 560 LFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFC 619

Query: 294 NYHFKPYRR 302
           N +  P  R
Sbjct: 620 NLNMMPEAR 628



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 125/264 (47%), Gaps = 13/264 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G C ++++D A+  L +M E G+EPN + Y  +++   +      S +  + I
Sbjct: 435 LYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFK------SGKVPEAI 488

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              +K+ D     G +P+V ++  ++    +A     ++   N M++ G+ P V  Y+++
Sbjct: 489 AMLQKILDS----GFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTAL 544

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  LC  G + +A +L  EMV  G+      Y      Y  + + + A  L  +M + GL
Sbjct: 545 VDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGL 604

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            + ++  Y   I  F  LN M   RE+++++ G G+ PD   Y  LI    +    +EA 
Sbjct: 605 QL-DLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAI 663

Query: 241 QYFVEMIEKGLLPQKVTFETLYRG 264
               EM  + +LP     +T   G
Sbjct: 664 SLQDEM--ERVLPSCTDSDTATDG 685



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 121/267 (45%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + SLI G+ K   +D  E+ + EM   G + +VVTYN L+N  C+   +  +  +     
Sbjct: 226 FNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGY----- 280

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                F  M+  G+  +V +FS  +  + +    + ++     M+ +G+     TY+ ++
Sbjct: 281 -----FAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLI 335

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR++DA  LL EMVR GV  +  TY          +    A  + R M++ G+ 
Sbjct: 336 DGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVR 395

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              +    ++ G FM  N  +    + +++K  GL  D+  Y  LI GLC   K  EA  
Sbjct: 396 ANELLYTTLIHGHFMNKNS-EKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKS 454

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
              +M E GL P  + + T+     +S
Sbjct: 455 LLTKMDESGLEPNYIIYTTMMDACFKS 481



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 131/267 (49%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI  +CK  R++ A  +   M   GV  NVVT++  ++  C+          E  +R
Sbjct: 261 YNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCK----------EGLVR 310

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F +MRVRG+  +  +++ ++    +A +   ++  L+ M  +G+   V TY+ +V
Sbjct: 311 EAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLV 370

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   ++ +AE++L  M + GV  +   Y      +   K++  A+ L  +MK  GL 
Sbjct: 371 DGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLE 430

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++  Y  LI     ++++D  + +   +  SGL P+   YT ++    +  K  EA  
Sbjct: 431 L-DISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIA 489

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
              ++++ G  P  +T+  L  GL ++
Sbjct: 490 MLQKILDSGFQPNVITYCALIDGLCKA 516



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 11/249 (4%)

Query: 16  DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI 75
           D + R +  + E+   PNV T+N++++ +C+          E  +  A  +F  M+  G 
Sbjct: 170 DRSGRLVRRLFEQLPAPNVFTFNIVIDFLCK----------EGELAEARSLFSRMKEMGC 219

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
            PDV +F+ ++  Y +  +       +  M+  G    V TY++++ C C  GR+E A  
Sbjct: 220 LPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYG 279

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
               M R GV  +  T++ F   +        AMKL+ QM+  G+ + N  +Y  LI   
Sbjct: 280 YFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMAL-NEFTYTCLIDGT 338

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
               R+D    + +++   G+  ++ +YT+L+ GLC+++K  EA      M + G+   +
Sbjct: 339 CKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANE 398

Query: 256 VTFETLYRG 264
           + + TL  G
Sbjct: 399 LLYTTLIHG 407



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 1/160 (0%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P V T++ V+  LC  G + +A  L   M   G  P   T+N     Y    + +   +L
Sbjct: 186 PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQL 245

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
             +M+  G C  ++ +YN LI  F    RM+     +  +K  G+  ++ +++  +   C
Sbjct: 246 VEEMRRSG-CKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFC 304

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           ++   +EA + F +M  +G+   + T+  L  G  ++  L
Sbjct: 305 KEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRL 344



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+  T+N          +   A  L+ +MKE G C+P++ ++N LI  +     +D V +
Sbjct: 186 PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMG-CLPDVVTFNSLIDGYGKCGELDEVEQ 244

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +  +++ SG   D+ +Y  LI+  C+  + + A  YF  M  +G++   VTF T      
Sbjct: 245 LVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFC 304

Query: 267 QSDMLRTWRRL 277
           +  ++R   +L
Sbjct: 305 KEGLVREAMKL 315


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 149/309 (48%), Gaps = 19/309 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G CK  R+D A   L EM+ +GV  NVVTY VL++G+C+          E+ + 
Sbjct: 331 YTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCK----------ERKVA 380

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE V   M   G+  +   ++ ++H +      + +L  L+ MK KG+   ++ Y +++
Sbjct: 381 EAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALI 440

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC+  ++++A+ LL +M  +G+ P+   Y               A+ + +++ + G  
Sbjct: 441 QGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGF- 499

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  LI        +D     +N ++  GL P++ +YT L+ GLC+     EA Q
Sbjct: 500 QPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQ 559

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT--------FGSEFQ 293
            F EM+ KG+   KV +  L  G ++   L     LK K+ +  +         F S F 
Sbjct: 560 LFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFC 619

Query: 294 NYHFKPYRR 302
           N +  P  R
Sbjct: 620 NLNMMPEAR 628



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 118/246 (47%), Gaps = 11/246 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G C ++++D A+  L +M E G+EPN + Y  +++   +      S +  + I
Sbjct: 435 LYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFK------SGKVPEAI 488

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              +K+ D     G +P+V ++  ++    +A     ++   N M++ G+ P V  Y+++
Sbjct: 489 AMLQKILDS----GFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTAL 544

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  LC  G + +A +L  EMV  G+      Y      Y  + + + A  L  +M + GL
Sbjct: 545 VDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGL 604

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            + ++  Y   I  F  LN M   RE+++++ G G+ PD   Y  LI    +    +EA 
Sbjct: 605 QL-DLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAI 663

Query: 241 QYFVEM 246
               EM
Sbjct: 664 SLQDEM 669



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 121/267 (45%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + SLI G+ K   +D  E+ + EM   G + +VVTYN L+N  C+   +  +  +     
Sbjct: 226 FNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGY----- 280

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                F  M+  G+  +V +FS  +  + +    + ++     M+ +G+     TY+ ++
Sbjct: 281 -----FAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLI 335

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR++DA  LL EMVR GV  +  TY          +    A  + R M++ G+ 
Sbjct: 336 DGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVR 395

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              +    ++ G FM  N  +    + +++K  GL  D+  Y  LI GLC   K  EA  
Sbjct: 396 ANELLYTTLIHGHFMNKNS-EKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKS 454

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
              +M E GL P  + + T+     +S
Sbjct: 455 LLTKMDESGLEPNYIIYTTMMDACFKS 481



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 131/267 (49%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI  +CK  R++ A  +   M   GV  NVVT++  ++  C+          E  +R
Sbjct: 261 YNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCK----------EGLVR 310

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F +MRVRG+  +  +++ ++    +A +   ++  L+ M  +G+   V TY+ +V
Sbjct: 311 EAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLV 370

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   ++ +AE++L  M + GV  +   Y      +   K++  A+ L  +MK  GL 
Sbjct: 371 DGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLE 430

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++  Y  LI     ++++D  + +   +  SGL P+   YT ++    +  K  EA  
Sbjct: 431 L-DISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIA 489

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
              ++++ G  P  +T+  L  GL ++
Sbjct: 490 MLQKILDSGFQPNVITYCALIDGLCKA 516



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 11/249 (4%)

Query: 16  DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI 75
           D + R +  + E+   PNV T+N++++ +C+          E  +  A  +F  M+  G 
Sbjct: 170 DRSGRLVRRLFEQLPAPNVFTFNIVIDFLCK----------EGELAEARSLFSRMKEMGC 219

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
            PDV +F+ ++  Y +  +       +  M+  G    V TY++++ C C  GR+E A  
Sbjct: 220 LPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYG 279

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
               M R GV  +  T++ F   +        AMKL+ QM+  G+ + N  +Y  LI   
Sbjct: 280 YFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMAL-NEFTYTCLIDGT 338

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
               R+D    + +++   G+  ++ +YT+L+ GLC+++K  EA      M + G+   +
Sbjct: 339 CKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANE 398

Query: 256 VTFETLYRG 264
           + + TL  G
Sbjct: 399 LLYTTLIHG 407



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 10/175 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK   ID A     +M + G++PNV  Y  L++G+C+   L+          
Sbjct: 506 YCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLN---------- 555

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F+EM  +G+  D   ++ +L  Y +      +      M + G+   +  Y+  +
Sbjct: 556 EAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFI 615

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
              C+   + +A E+  EM+ +G+ P    YNC   +Y+   +   A+ L  +M+
Sbjct: 616 SGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEME 670



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 1/160 (0%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P V T++ V+  LC  G + +A  L   M   G  P   T+N     Y    + +   +L
Sbjct: 186 PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQL 245

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
             +M+  G C  ++ +YN LI  F    RM+     +  +K  G+  ++ +++  +   C
Sbjct: 246 VEEMRRSG-CKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFC 304

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           ++   +EA + F +M  +G+   + T+  L  G  ++  L
Sbjct: 305 KEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRL 344



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+  T+N          +   A  L+ +MKE G C+P++ ++N LI  +     +D V +
Sbjct: 186 PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMG-CLPDVVTFNSLIDGYGKCGELDEVEQ 244

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +  +++ SG   D+ +Y  LI+  C+  + + A  YF  M  +G++   VTF T      
Sbjct: 245 LVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFC 304

Query: 267 QSDMLRTWRRL 277
           +  ++R   +L
Sbjct: 305 KEGLVREAMKL 315


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 138/289 (47%), Gaps = 11/289 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI+  C+  ++  A   L +M+ RG  P+VVTYN+LL   C+           +  R
Sbjct: 10  YNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKG----------RGYR 59

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D MR  G  P+  ++++++           +L+ L  +   G  P+   Y++V+
Sbjct: 60  QAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVL 119

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LCS  R  DA+EL+ EM+R    P+  T+N        +     A++L  +M + G C
Sbjct: 120 KGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHG-C 178

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+ +YN +I        +D    + + +K  G  PD+ +Y  L+ GLC   +W +A +
Sbjct: 179 TANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEE 238

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
               M + G LP  VTF TL   L Q  ++     + K++ ++  T  S
Sbjct: 239 LMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNS 287



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 136/323 (42%), Gaps = 45/323 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G C   R   A+  + EM+     PN  T+NV++  +CR+  L          +
Sbjct: 115 YNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLL----------Q 164

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ ++M   G   ++ +++ +++          ++  L+ MK  G  P + TY++++
Sbjct: 165 QAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLL 224

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LCS  R  DAEEL+  M +NG  P   T+N        +     A+++++QM + G C
Sbjct: 225 KGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKG-C 283

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD---------------------- 219
            PN  +Y+ +I       ++D   E++N++   G  PD                      
Sbjct: 284 TPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQT 343

Query: 220 ----LDS--------YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
                DS        Y  ++ GLC   K + A      M+  G +P  +T+  L  GL  
Sbjct: 344 VRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAY 403

Query: 268 SDMLRTWRRLKKKLDEESITFGS 290
              L   R L  KL    +   S
Sbjct: 404 EGYLNEARELLIKLCSRDVLVNS 426



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 130/286 (45%), Gaps = 12/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+ G C    +D A   L  +   G +P+ V YN +L G+C       +ER+     
Sbjct: 80  YNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCS------AERW----G 129

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A+++  EM      P+  +F++V++   R    Q ++  L  M + G    + TY++++
Sbjct: 130 DADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAII 189

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    ++ A  LL +M   G  P   TYN   K          A +L   M ++G C
Sbjct: 190 NGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNG-C 248

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+  ++N LIG       M    E++  +   G  P+  +Y+ +I GL +  K  +A +
Sbjct: 249 LPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALE 308

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            F EM  KG  P K+ ++ L   L   D +    +  +KL +  I+
Sbjct: 309 LFNEMGHKGFNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGIS 353


>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
          Length = 601

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 145/317 (45%), Gaps = 46/317 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G C    +D A   LGEM   GV PNV+ Y+ LL G CR      S R++    
Sbjct: 153 YGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGYCR------SGRWQ---- 202

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  KVF+EM   G+EPDV  F+  +    +  +   ++   + M ++G+ P V TY+ ++
Sbjct: 203 DVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLI 262

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY--------- 172
            CLC  G + +A  L  EM   GV P   TYN       G  + +GAM L          
Sbjct: 263 NCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTL 322

Query: 173 ---------------------------RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
                                      R+M  +  C+ N+ +YN LIG F+ +++++M  
Sbjct: 323 VEPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAM 382

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            + +++  SGL PD  +Y++LI+G  +  +   A  +   M ++G+  +   +  L   L
Sbjct: 383 NLMSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLAAL 442

Query: 266 IQSDMLRTWRRLKKKLD 282
            Q  M+     L  ++D
Sbjct: 443 CQLGMMEQAMVLFNEMD 459



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 138/290 (47%), Gaps = 16/290 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+T  I   CK  RI  A +    M++RG+EPNVVTYNVL+N +C+          E ++
Sbjct: 222 MFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCK----------EGSV 271

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG--ICPTVATYS 118
           R A  + +EM  +G+ PDV +++ ++   S   +   ++  L  M +    + P V T++
Sbjct: 272 REALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFN 331

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           SV+  LC  GR+  A  +   M   G   +  TYN     +      N AM L  ++   
Sbjct: 332 SVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISS 391

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           GL  P+  +Y+ILI  F  L  +D        +   G+  +L  Y  L+  LC+    ++
Sbjct: 392 GL-EPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLAALCQLGMMEQ 450

Query: 239 ACQYFVEM-IEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           A   F EM +  GL    V + T+  G  +S  ++  ++L + + +E + 
Sbjct: 451 AMVLFNEMDMNCGL--DAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGLA 498



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 113/236 (47%), Gaps = 13/236 (5%)

Query: 33  NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG---IEPDVTSFSIVLHVY 89
           + V+YN++L  +CRR            +R A  +  +M         P+  S+++V+   
Sbjct: 75  DAVSYNIVLAALCRRGG---------DLRQALSLLADMSREAHPAARPNAVSYTMVMRGL 125

Query: 90  SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
             + +   ++  L  M+  G+   V TY ++++ LC    ++ A ELLGEM  +GV P+ 
Sbjct: 126 CASRRTDEAVALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNV 185

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
             Y+C  + Y          K++ +M   G+  P++  +   I       R+    ++ +
Sbjct: 186 IVYSCLLRGYCRSGRWQDVSKVFEEMSRLGV-EPDVIMFTGFIDDLCKKGRIGKAVKVKD 244

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            +   GL P++ +Y +LI+ LC++   +EA     EM +KG+ P  VT+ TL  GL
Sbjct: 245 IMVQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGL 300



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 119/263 (45%), Gaps = 14/263 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + S+I+G CKI R+  A      M ERG   N+VTYN L+ G  R   +H        + 
Sbjct: 330 FNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLR---VH-------KVN 379

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  E+   G+EPD  ++SI+++ +S+  +   +   L  M ++GI   +  Y  ++
Sbjct: 380 MAMNLMSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLL 439

Query: 122 KCLCSCGRIEDAEELLGEMVRN-GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             LC  G +E A  L  EM  N G+   A  Y+          D   A +L + M ++GL
Sbjct: 440 AALCQLGMMEQAMVLFNEMDMNCGL--DAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGL 497

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  +Y+ILI MF  L  ++    +   +  SG  PD+  +  LI G   + +  +  
Sbjct: 498 -APDAVTYSILINMFAKLGDLEEAERVLKQMAASGFVPDVAVFDSLIKGYSAEGQINKIL 556

Query: 241 QYFVEMIEKGLLPQKVTFETLYR 263
               EM  K +        TL R
Sbjct: 557 DLIHEMRAKNVAIDPKFICTLVR 579



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 120/276 (43%), Gaps = 13/276 (4%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
              PN V+Y +++ G+C       S R ++ +     +   M+  G+  DV ++  ++  
Sbjct: 110 AARPNAVSYTMVMRGLC------ASRRTDEAV----ALLRSMQASGVRADVVTYGTLIRG 159

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
              A +   +L+ L  M   G+ P V  YS +++  C  GR +D  ++  EM R GV P 
Sbjct: 160 LCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPD 219

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
              +  F  +   +     A+K+   M + GL  PN+ +YN+LI        +     + 
Sbjct: 220 VIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGL-EPNVVTYNVLINCLCKEGSVREALALR 278

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL--PQKVTFETLYRGLI 266
           N++   G+ PD+ +Y  LI GL    +   A     EMI+   L  P  VTF ++  GL 
Sbjct: 279 NEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLC 338

Query: 267 QSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR 302
           +   +R    +++ + E          NY    + R
Sbjct: 339 KIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLR 374



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 117/265 (44%), Gaps = 13/265 (4%)

Query: 30  VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDV---TSFSIVL 86
           V P      VLL    RR     +    + +R A  V +   +    PDV    S++IVL
Sbjct: 29  VRPAAPFLAVLL----RRGRADAAALLNRRLR-AAPVTEACSLLSALPDVRDAVSYNIVL 83

Query: 87  HVYSR----AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR 142
               R      Q    L  ++        P   +Y+ V++ LC+  R ++A  LL  M  
Sbjct: 84  AALCRRGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEAVALLRSMQA 143

Query: 143 NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202
           +GV     TY    +      + +GA++L  +M   G+  PN+  Y+ L+  +    R  
Sbjct: 144 SGVRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVH-PNVIVYSCLLRGYCRSGRWQ 202

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
            V +++ ++   G+ PD+  +T  I  LC+K +  +A +    M+++GL P  VT+  L 
Sbjct: 203 DVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLI 262

Query: 263 RGLIQSDMLRTWRRLKKKLDEESIT 287
             L +   +R    L+ ++D++ + 
Sbjct: 263 NCLCKEGSVREALALRNEMDDKGVA 287


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 134/265 (50%), Gaps = 12/265 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+ K +++D A + L  M+ +G EP  VTY  +++G C+             I 
Sbjct: 216 YTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKL----------DMIN 265

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A++V  +MR RG EP +  F+ +L  Y    + + +   L  M  +G  P V  Y+S++
Sbjct: 266 EAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLI 325

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L S GR+ +A  +   M+  G  P A TY    + +    +   A ++   M + G+ 
Sbjct: 326 DLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVG 385

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN L+  ++ L R+D    +++ +  SG+ P+  ++ +L+HGL +  K   A  
Sbjct: 386 -PDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFS 444

Query: 242 YFVEMIEKGLLPQK-VTFETLYRGL 265
            F EM+EK  +P   V++  L  GL
Sbjct: 445 LFKEMLEKEEVPPTLVSYTILIDGL 469



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 134/276 (48%), Gaps = 28/276 (10%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G EP +V+YN +++G+   AS+         +  A K F+ M   G EPDV +F+ ++H 
Sbjct: 2   GCEPTIVSYNTVISGL---ASID-------KMDEAYKFFNSMIDNGCEPDVIAFTTLIHG 51

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           + +A QPQ+    LN    K   P V  Y+SV+   C  G ++             V P 
Sbjct: 52  FCKAGQPQVGHKLLN-QALKRFRPDVFLYTSVIHGYCKAGDLDTG-------YFRAVTPK 103

Query: 149 AE----TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           A     +Y    K     K  + A +L+ ++K  G C PN+ +Y  +I   +   R++  
Sbjct: 104 ASLDVISYTTVIKGLADSKRIDEACELFEELKTAG-CSPNVVAYTAVIDGLLKAGRIEDG 162

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            + + ++ GS   P   +YT++I GLC+ Q   +AC+ F +M++KG +P  +T+ TL  G
Sbjct: 163 LKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDG 222

Query: 265 LIQSDMLRTWRR-----LKKKLDEESITFGSEFQNY 295
             ++  +   R+     L K  +  ++T+GS    +
Sbjct: 223 FSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGF 258



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 131/286 (45%), Gaps = 12/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I G CK   +  A +   +M+++G  P+ +TY  L++G  + + +           
Sbjct: 181 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMD---------- 230

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ D M  +G EP   ++  ++H + +      + + +  M+E+G  P +  ++S++
Sbjct: 231 EARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLL 290

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               S GR E+A ++L EM   G  P    Y               A  ++  M E G C
Sbjct: 291 SYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKG-C 349

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y  +I  F  +  ++   EI   +  SG+GPD  +Y  L+ G  + ++  +A  
Sbjct: 350 APDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFG 409

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKKKLDEESI 286
            +  M+  G+ P  VTF  L  GL +     R +   K+ L++E +
Sbjct: 410 VYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEV 455



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 133/299 (44%), Gaps = 26/299 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF--EKT 59
           Y S+++G+CK++ I+ A+  + +M ERG EP +  +  LL+    +     + +   E T
Sbjct: 251 YGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMT 310

Query: 60  IRN-----------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            R                        A  VFD M  +G  PD  ++  ++  +S+    +
Sbjct: 311 ARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVE 370

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + + L  M + G+ P    Y+S++       R++ A  +   MV +G+ P+A T+N   
Sbjct: 371 AAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLM 430

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A  L+++M E     P + SY ILI       R+      + ++   G+
Sbjct: 431 HGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGI 490

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT-W 274
            P+  +YT LI+ L +  +  EA +   +M++ G+ P    +  L  GLI S M+ T W
Sbjct: 491 IPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAW 549



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 125/292 (42%), Gaps = 35/292 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G   I+++D A +F   MI+ G EP+V+ +  L++G C+       +   K + 
Sbjct: 10  YNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQ---PQVGHKLLN 66

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYS----------RAHQPQLSLDKLNFMKEKGIC 111
            A K F         PDV  ++ V+H Y           RA  P+ SLD           
Sbjct: 67  QALKRF--------RPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLD----------- 107

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
             V +Y++V+K L    RI++A EL  E+   G  P+   Y                +K 
Sbjct: 108 --VISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKN 165

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
           + +M     CVP   +Y ++I        +    +++  +   G  PD  +YT LI G  
Sbjct: 166 FEEMSGSS-CVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFS 224

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           +  K  EA +    M+ KG  P  VT+ ++  G  + DM+   + +  ++ E
Sbjct: 225 KASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRE 276



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 127/295 (43%), Gaps = 43/295 (14%)

Query: 1   MYTSLIYGWCKIN--------------------------------RIDMAERFLGEMIER 28
           +YTS+I+G+CK                                  RID A     E+   
Sbjct: 78  LYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKRIDEACELFEELKTA 137

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G  PNVV Y  +++G+ +      + R E  ++N    F+EM      P  T++++V+  
Sbjct: 138 GCSPNVVAYTAVIDGLLK------AGRIEDGLKN----FEEMSGSSCVPTRTTYTVVIDG 187

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
             +A     +      M +KG  P   TY++++       ++++A +LL  M+  G  P+
Sbjct: 188 LCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPT 247

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
           A TY      +      N A ++  QM+E G C P +  +  L+  +++  R +   ++ 
Sbjct: 248 AVTYGSIVHGFCKLDMINEAKEVIAQMRERG-CEPGLFIFTSLLSYYLSKGRAEEAYQVL 306

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            ++   G  PD+  YT LI  L    +  EA   F  MIEKG  P  +T+ T+ +
Sbjct: 307 TEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQ 361



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 12/200 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+ G+ K+ R+D A      M+  G++PN VT+NVL++G+ +           KT R
Sbjct: 391 YNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDG---------KTDR 441

Query: 62  NAEKVFDEMRVRG-IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            A  +F EM  +  + P + S++I++    +A +   +  +   M ++GI P   TY+S+
Sbjct: 442 -AFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSL 500

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L   GRI +A++L+ +MV+ GV P  + Y+            + A  ++++M + G 
Sbjct: 501 IYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRG- 559

Query: 181 CVPNMHSYNILIGMFMALNR 200
           C PN  +Y +L   F A  R
Sbjct: 560 CAPNEVTYKVLRRGFRAAGR 579



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G  K  R+  A     EMI+RG+ P   TY  L+  + +             I 
Sbjct: 462 YTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGR----------IP 511

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+K+ ++M   G+ PDV ++S ++     +     + D    M ++G  P   TY  + 
Sbjct: 512 EAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLR 571

Query: 122 KCLCSCGRIEDAEEL 136
           +   + GR  D E +
Sbjct: 572 RGFRAAGRALDLEAV 586


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 150/296 (50%), Gaps = 16/296 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI G+CK+ R++ A  ++ + I  G EP+ VTYN  ++ +C+             + +A 
Sbjct: 271 LINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGH----------VSHAL 320

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           KV D M   G +PDV +++ V++  S+  +   +   +N M ++G  P   T+++++  L
Sbjct: 321 KVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVAL 380

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           CS  R+E+A +L  E+   G+ P   T+N          D +  ++L+ +MK  G C P+
Sbjct: 381 CSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSG-CAPD 439

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
             +YNILI    ++ ++    ++  +++ +G      +Y  +I  LC++ + +EA + F 
Sbjct: 440 EVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFD 499

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           +M   G+    VTF TL  GL ++  +     L     K+ L   +IT+ S   +Y
Sbjct: 500 QMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHY 555



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 139/283 (49%), Gaps = 13/283 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI   C  NR++ A     E+  +G+ P+V T+N+L+N +C+    H   R      
Sbjct: 373 FNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRL----- 427

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP-TVATYSSV 120
                F+EM+  G  PD  +++I++       +   +LD L  M+  G CP +  TY+++
Sbjct: 428 -----FEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNG-CPRSTVTYNTI 481

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   RIE+AEE+  +M  +G+  SA T+N         K  + A +L  QM ++GL
Sbjct: 482 IDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGL 541

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              N+ +YN ++  +     +    +I   +  +G   D+ +Y  LI+GLC+  + + A 
Sbjct: 542 QPSNI-TYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVAL 600

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           +    M  KG+ P    +  + + L + + LR    L +++ E
Sbjct: 601 KLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTE 643



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 121/265 (45%), Gaps = 11/265 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L+    + +R+ + E    EM +RG++P+VVT N L+  +CR             +
Sbjct: 162 VYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCR----------AHQV 211

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R A  + +EM    + PD T+F+ ++  +      + +L     M E G  PT  T + +
Sbjct: 212 RTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVL 271

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  GR+EDA   + + + +G  P   TYN F          + A+K+   M ++G 
Sbjct: 272 INGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEG- 330

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +YN +I        +D  + I N +   G  PD  ++  LI  LC + + +EA 
Sbjct: 331 HDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEAL 390

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
               E+  KGL P   TF  L   L
Sbjct: 391 DLARELTVKGLSPDVYTFNILINAL 415



 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 128/277 (46%), Gaps = 13/277 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I    K   +D A+  + +M++RG  P+  T+N L+  +C +       R E+ + 
Sbjct: 338 YNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQ------NRLEEALD 391

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A     E+ V+G+ PDV +F+I+++   +   P L +     MK  G  P   TY+ ++
Sbjct: 392 LAR----ELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILI 447

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LCS G++ +A +LL EM  NG   S  TYN        +     A +++ QM   G+ 
Sbjct: 448 DHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGIS 507

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              + ++N LI       R+D   E+   +   GL P   +Y  ++   C++   K+A  
Sbjct: 508 RSAV-TFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAAD 566

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
               M   G     VT+ TL  GL ++   RT   LK
Sbjct: 567 ILETMTANGFEIDVVTYGTLINGLCKAG--RTQVALK 601



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 117/270 (43%), Gaps = 47/270 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I   CK  RI+ AE    +M   G+  + VT+N L++G+C+           K I 
Sbjct: 478 YNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCK----------AKRID 527

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++ ++M   G++P   +++ +L  Y +    + + D L  M   G    V TY +++
Sbjct: 528 DATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLI 587

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR + A +LL  M   G+ P+ + YN   +    R +   A+ L+R+M E    
Sbjct: 588 NGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTE---- 643

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE-KQKWKEAC 240
                                            G  PD  +Y ++  GLC      KEA 
Sbjct: 644 --------------------------------VGEPPDALTYKIVFRGLCRGGGPIKEAF 671

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
            + VEM+ KG +P+  +F  L  GL+   M
Sbjct: 672 DFLVEMVNKGFMPEFSSFRMLAEGLLNLGM 701



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 1/190 (0%)

Query: 95  PQLSLDKLN-FMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           P+ +L  LN  +  +   P+ A Y  +++ L + G  +  E L+ EM R G    A    
Sbjct: 69  PEAALQMLNSALAREDFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVR 128

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
            F + Y   +  + A+ L R          +   YN L+ +    +RM ++  ++N++  
Sbjct: 129 SFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTD 188

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT 273
            G+ PD+ +   LI  LC   + + A     EM    + P + TF TL +G I+   +  
Sbjct: 189 RGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEA 248

Query: 274 WRRLKKKLDE 283
             R+K K+ E
Sbjct: 249 ALRVKTKMME 258


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 142/279 (50%), Gaps = 14/279 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI G+C+  +    ++ + EM+ + + PNV T+NVL++  CR+  +           
Sbjct: 262 YTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKM----------I 311

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKL-NFMKEKGICPTVATYSSV 120
            A+ +F+ M  RG +PD+ +F+ ++  +   H   L   KL + + E+GI P V +Y+ +
Sbjct: 312 EAQGMFNLMVKRGQQPDIVTFNTLISGHC-LHGNVLEARKLFDTVFERGILPDVWSYTIL 370

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C C RI++A  L  EM    +      Y+            + A +L+  +  DG 
Sbjct: 371 IIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGP 430

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+ +YNILI  F  +  +DM  E++  + G GL P + +Y +LI+G C+ ++ +EA 
Sbjct: 431 -PPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAM 489

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR-TWRRLK 278
                M  K L P  +T+ +L+ GL +S  +   W   K
Sbjct: 490 NLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFK 528



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 132/285 (46%), Gaps = 26/285 (9%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR------- 61
           +C +  +  A   LG +++RG +PN +T   ++ G+C    +  +  F   +        
Sbjct: 129 YCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLD 188

Query: 62  ------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN 103
                             +A ++  EM  + ++P++  +++++  + +      + D   
Sbjct: 189 EVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYL 248

Query: 104 FMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163
            + + GI P + TY+S+++  C  G+  + ++L+ EMV   + P+  T+N     +  + 
Sbjct: 249 KIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKG 308

Query: 164 DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSY 223
               A  ++  M + G   P++ ++N LI        +   R++++ V   G+ PD+ SY
Sbjct: 309 KMIEAQGMFNLMVKRGQ-QPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSY 367

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           T+LI G C+ ++  EA   F EM  K ++   V + +L  GL +S
Sbjct: 368 TILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKS 412



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 105/249 (42%), Gaps = 11/249 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N ID A      +I     P+V+ +N ++  V +           K    A  +  +M  
Sbjct: 63  NGIDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKM----------KHCPVAISLLKQMVF 112

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           +G+ P + + SI ++ Y    +   +   L  + ++G  P   T ++V+K LC  G ++ 
Sbjct: 113 KGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQK 172

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A +    +   G+      Y            +  A +L ++M E  +  PN+  YN++I
Sbjct: 173 AMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEM-EGQVVKPNIVIYNMII 231

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
             F         R+++  +   G+ PD+ +YT LI G C   +W E  Q   EM+ K + 
Sbjct: 232 DSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNIN 291

Query: 253 PQKVTFETL 261
           P   TF  L
Sbjct: 292 PNVYTFNVL 300



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 10/165 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+SLI G CK  RI  A      +   G  PNV+TYN+L++  C+           + I
Sbjct: 401 LYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKI----------QDI 450

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               ++F  M  +G+ P V +++I+++ Y ++ + + +++ L+ M+ K + P   TY+S+
Sbjct: 451 DMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSL 510

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
              LC  GRI DA EL   M   G      TYN     +   +D 
Sbjct: 511 FDGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFCKAQDV 555



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 119/263 (45%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + ++I    K+    +A   L +M+ +GV P++ T ++ +N  C    +           
Sbjct: 87  FNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMG---------- 136

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V   +  RG +P+  + + V+       + Q ++D  + +  +G+      Y +++
Sbjct: 137 FAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLI 196

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  DA +LL EM    V P+   YN     +   +    A  LY ++ + G+ 
Sbjct: 197 NGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGI- 255

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  LI  F    +   V+++  ++    + P++ ++ +LI   C K K  EA  
Sbjct: 256 DPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQG 315

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F  M+++G  P  VTF TL  G
Sbjct: 316 MFNLMVKRGQQPDIVTFNTLISG 338



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 1/144 (0%)

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K L S   I+DA  L   ++     PS   +N         K    A+ L +QM   G+ 
Sbjct: 57  KILSSFNGIDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGV- 115

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ + +I I  +  L  M     +   V   G  P+  + T ++ GLC   + ++A  
Sbjct: 116 TPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMD 175

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
           +   +  +G+L  +V + TL  GL
Sbjct: 176 FHDNVAAQGMLLDEVCYGTLINGL 199


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 134/266 (50%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+++G+C   +   A   L +M   GVEPNVVTY+ L+N +C+      +E       
Sbjct: 247 YNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNG--RSTE------- 297

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+FD M  RG+EPD+ ++  +L  + +  +   S    + M   G+ P + TY++++
Sbjct: 298 -ARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 356

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++++A +LL  MV  GV P   TY      Y      + A+ L+++M   G+ 
Sbjct: 357 DGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVS 416

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YNI++       R    +E++  +  SG   +L +Y +++HGLC+     EA +
Sbjct: 417 -PNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALR 475

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
            F  +    L  +  TF  +   L++
Sbjct: 476 MFQNLCLTDLQLETRTFNIMIGALLK 501



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 132/270 (48%), Gaps = 6/270 (2%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIER---GVEPNVVTYNVLLNGVCRRASLHPSERFEK 58
           Y +L+ G C  NR   A   L  M +    G  P+VV+YN +LNG  +      ++   +
Sbjct: 166 YNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGI--QTKLTAQ 223

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            +  A +V + M   G+ PD  +++ +LH Y  + QP+ ++  L  M+  G+ P V TYS
Sbjct: 224 AMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYS 283

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           S++  LC  GR  +A ++   M + G+ P   TY    + +        + KL+  M   
Sbjct: 284 SLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRI 343

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P++ +YN LI       +MD   ++   +   G+ PD+ +Y  LI+G C   +  +
Sbjct: 344 GV-KPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDD 402

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           A   F EM+  G+ P  +T+  + +GL  +
Sbjct: 403 ALALFKEMVSSGVSPNIITYNIILQGLFHT 432



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 134/300 (44%), Gaps = 44/300 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SL+   CK  R   A +    M +RG+EP++ TY  LL G C+          E  + 
Sbjct: 282 YSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCK----------EGRVI 331

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            +EK+FD M   G++PD+ +++ ++     A +   +   L  M   G+ P + TY +++
Sbjct: 332 ESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLI 391

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG-- 179
              C   R++DA  L  EMV +GV P+  TYN   +     +    A +LY  + + G  
Sbjct: 392 NGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQ 451

Query: 180 ----------------------------LCVPNMH----SYNILIGMFMALNRMDMVREI 207
                                       LC+ ++     ++NI+IG  +   RMD  +++
Sbjct: 452 LELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDL 511

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           +     +GL PD+ +Y+++   L E+   +E    F+ M E G         ++ R L+Q
Sbjct: 512 FAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQ 571



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 138/269 (51%), Gaps = 15/269 (5%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           +D A   L  M++ GV P+ +TYN +L+G C  +S  P E        A     +MR  G
Sbjct: 225 MDKAMEVLNTMVKNGVMPDCMTYNSILHGYC--SSGQPKE--------AIGTLKKMRSDG 274

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           +EP+V ++S +++   +  +   +    + M ++G+ P +ATY ++++  C  GR+ ++E
Sbjct: 275 VEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESE 334

Query: 135 ELLGEMVRNGVCPSAETYNCFFKE--YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           +L   MVR GV P   TYN         G+ D   A KL   M   G+  P++ +Y  LI
Sbjct: 335 KLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDE--ATKLLASMVSVGV-KPDIVTYGTLI 391

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
             +  ++RMD    ++ ++  SG+ P++ +Y +++ GL   ++   A + +V + + G  
Sbjct: 392 NGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQ 451

Query: 253 PQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            +  T+  +  GL ++++     R+ + L
Sbjct: 452 LELSTYNIILHGLCKNNLTDEALRMFQNL 480



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 21/274 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI   C+  R+D+    LG ++++G   + +T+  LL G+C  A    S+  +  +R
Sbjct: 95  YAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLC--ADKRTSDAMDIVLR 152

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK---GICPTVATYS 118
                   M   G  PDV S++ +L      ++ Q +L+ L+ M +    G  P V +Y+
Sbjct: 153 -------RMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYN 205

Query: 119 SV--------VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMK 170
           +V        ++   +   ++ A E+L  MV+NGV P   TYN     Y        A+ 
Sbjct: 206 TVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIG 265

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
             ++M+ DG+  PN+ +Y+ L+       R    R+I++ +   GL PD+ +Y  L+ G 
Sbjct: 266 TLKKMRSDGV-EPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGH 324

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           C++ +  E+ + F  M+  G+ P  +T+ TL  G
Sbjct: 325 CKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDG 358



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 120/259 (46%), Gaps = 21/259 (8%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG---ICPTVATYS 118
           +A  VFDE+  RG    +   +  L   +R H P  ++ + N M   G   + PTV TY+
Sbjct: 38  DARHVFDELLRRGRGASIYGLNRALADVAR-HSPAAAVSRYNRMARAGAGKVTPTVHTYA 96

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL-YRQMKE 177
            ++ C C  GR++     LG +V+ G    A T+    K     K  + AM +  R+M E
Sbjct: 97  ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTE 156

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWN---DVKGSGLGPDLDSYTMLIHGLCEK- 233
            G C+P++ SYN L+      NR     E+ +   D +G G  PD+ SY  +++G  ++ 
Sbjct: 157 LG-CIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEG 215

Query: 234 -------QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKKKLD 282
                  Q   +A +    M++ G++P  +T+ ++  G   S    + + T ++++    
Sbjct: 216 IQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGV 275

Query: 283 EESITFGSEFQNYHFKPYR 301
           E ++   S   NY  K  R
Sbjct: 276 EPNVVTYSSLMNYLCKNGR 294



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 25/188 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV--CRRAS---------L 50
           Y +LI G+C+++R+D A     EM+  GV PN++TYN++L G+   RR +          
Sbjct: 387 YGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSIT 446

Query: 51  HPSERFEKTIRN--------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
               + E +  N              A ++F  + +  ++ +  +F+I++    +  +  
Sbjct: 447 KSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMD 506

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + D        G+ P V TYS + + L   G +E+ ++L   M  NG    +   N   
Sbjct: 507 EAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIV 566

Query: 157 KEYRGRKD 164
           ++   R D
Sbjct: 567 RKLLQRGD 574


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 149/298 (50%), Gaps = 15/298 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFL--GEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           YT LI G+CK+ +  M E FL   +M+++ V PNVVTY  L +G+C++            
Sbjct: 428 YTVLIDGYCKVGK--MTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGD---------- 475

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +  A ++  EM  +G+E ++ +++ +++   +A   + ++  +  M E G+ P V TY++
Sbjct: 476 VCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTT 535

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC    ++ A  LL EM+  G+ P+  TYN     +       G  +L   M E  
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  PN  +YN L+  +     M    EI+  +    + P+ ++Y +LI G C+ +  KEA
Sbjct: 596 IH-PNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEA 654

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
             +  EMIEKG      ++  L R L +       RRL +K+ ++ +T   +  N++ 
Sbjct: 655 LYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYI 712



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 139/287 (48%), Gaps = 12/287 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++T+++ G+C+   +  A  +  EM +RG+  + VTY  L+NG+CR   L          
Sbjct: 357 VFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGEL---------- 406

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + AE+V  EM  +G++ D  ++++++  Y +  +   +    N M +K + P V TY+++
Sbjct: 407 KEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTAL 466

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              LC  G +  A ELL EM   G+  +  TYN          +   AM+    M E GL
Sbjct: 467 SDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGL 526

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++++Y  +IG       +D    +  ++   G+ P + +Y +L++G C   + +   
Sbjct: 527 -KPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGK 585

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL-IQSDMLRTWRRLKKKLDEESI 286
           +    M+EK + P   T+ +L +   I+ +M  T    K  L +E +
Sbjct: 586 RLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVV 632



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 141/299 (47%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTS+I   C   ++  A R + +M+  GV  +   +  +++G CR+  L  +  +     
Sbjct: 323 YTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNW----- 377

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                FDEM+ RG+  D  +++ +++   RA + + +   L  M++KG+     TY+ ++
Sbjct: 378 -----FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLI 432

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++ +A  +  +MV+  V P+  TY         + D   A +L  +M   GL 
Sbjct: 433 DGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLE 492

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N+ +YN LI        ++       D+  +GL PD+ +YT +I  LC+ ++   A  
Sbjct: 493 L-NIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHS 551

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGSEFQNY 295
              EM++KG+ P  VT+  L  G   S  +   +R     L+K +   + T+ S  + Y
Sbjct: 552 LLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQY 610



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 118/251 (47%), Gaps = 18/251 (7%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           +D A +   E+ E+    N  +YN+LL  +C              I++A ++FDEM    
Sbjct: 238 LDEAVQLFQELPEK----NTCSYNILLKALCTAGR----------IKDAHQLFDEM---A 280

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
             PDV ++ I++H Y    + + ++  L+ M  +G+      Y+SV+  LC  G++ DA 
Sbjct: 281 SPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAV 340

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
            ++ +MV +GV   A  +      +  + D   A   + +M++ GL    + +Y  LI  
Sbjct: 341 RVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGV-TYTALING 399

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                 +     +  +++  GL  D  +YT+LI G C+  K  EA     +M++K + P 
Sbjct: 400 LCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPN 459

Query: 255 KVTFETLYRGL 265
            VT+  L  GL
Sbjct: 460 VVTYTALSDGL 470



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 99/231 (42%), Gaps = 17/231 (7%)

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           +R  GI P   S + VL         QL       + EK  C    +Y+ ++K LC+ GR
Sbjct: 217 LRQYGISPSPESCNAVLCRLPLDEAVQL----FQELPEKNTC----SYNILLKALCTAGR 268

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           I+DA +L  EM      P   TY      Y    +   A+KL  +M   GL + N  +Y 
Sbjct: 269 IKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLEL-NPVAYT 324

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            +I +     ++     +  D+   G+  D   +T ++ G C K     A  +F EM ++
Sbjct: 325 SVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKR 384

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           GL    VT+  L  GL ++  L+   R+      K LD +++T+      Y
Sbjct: 385 GLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGY 435


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 141/281 (50%), Gaps = 11/281 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  ++ G C+  +++ A     +M+++ + PNVVTYN L+NG+C+             I
Sbjct: 46  IYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWR----------I 95

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++F EM  +G  P   S++ ++  + +      + D  + M      P V TY+++
Sbjct: 96  ETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTL 155

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L   G+++ A E+L  MV+ GV P+  TY+C    +   +  + A KL  QM   G+
Sbjct: 156 IDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGI 215

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P + +YNIL+      ++++   +++  +      P + +Y  L+  LC  ++   A 
Sbjct: 216 -APTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAH 274

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           + + EMI KG  P  +T++TL  GL ++  +   + L +K+
Sbjct: 275 RLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 315



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 127/257 (49%), Gaps = 15/257 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK  RI+ A     EM  +G  P  V+YN L++G C++          K + 
Sbjct: 82  YNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKK----------KDLV 131

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ VFD+M      P+V +++ ++   S++ + Q + + L+ M +KG+ P VATYS ++
Sbjct: 132 AAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLI 191

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R+++A +LL +MV  G+ P+  TYN              A KL+R M +   C
Sbjct: 192 DGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQR-RC 250

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +YN L+       ++D    ++ ++   G  PD  +Y  L  GL    K  EA  
Sbjct: 251 HPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEA-- 308

Query: 242 YFVEMIEKGLLPQKVTF 258
              E++EK  L ++  F
Sbjct: 309 --QELMEKMKLTKRNPF 323



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 134/276 (48%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++   CK  RID A   + EM  RG++P+   YN +L+G+C+          E+ + 
Sbjct: 12  YGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQ----------EEKVE 61

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F++M  + I P+V +++ +++   +A + + + +    M  KG  PT  +Y++++
Sbjct: 62  EARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLI 121

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    +  A+++  +MVR+   P+  TY               A ++   M + G+ 
Sbjct: 122 DGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGV- 180

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y+ LI  F  + R+D   ++   +   G+ P + +Y +L++ LC   K ++A +
Sbjct: 181 TPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFK 240

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F  M ++   P  VT+ TL R L     L    RL
Sbjct: 241 LFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRL 276



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 121/252 (48%), Gaps = 11/252 (4%)

Query: 26  IERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85
           + R   P+ +TY  ++  +C+           K I +A    +EM  RGI+PD   ++ V
Sbjct: 1   MARYAPPDALTYGPIVERLCK----------TKRIDDALATVEEMATRGIKPDAFIYNFV 50

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           L    +  + + +      M ++ I P V TY++++  LC   RIE A EL  EM   G 
Sbjct: 51  LSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGY 110

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P+  +YN     +  +KD   A  ++ +M     CVPN+ +Y  LI       ++    
Sbjct: 111 VPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSN-CVPNVVTYTTLIDGLSKSGKVQAAA 169

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           E+ + +   G+ P++ +Y+ LI G C+ ++  EA +   +M+ +G+ P  VT+  L   L
Sbjct: 170 EVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSL 229

Query: 266 IQSDMLRTWRRL 277
            ++D L    +L
Sbjct: 230 CRADKLEDAFKL 241



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 1/176 (0%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P   TY  +V+ LC   RI+DA   + EM   G+ P A  YN         +    A  L
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
           + +M +  +  PN+ +YN LI       R++   E++ ++ G G  P   SY  LI G C
Sbjct: 67  FEKMVKQRIN-PNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFC 125

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +K+    A   F +M+    +P  VT+ TL  GL +S  ++    +   + ++ +T
Sbjct: 126 KKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVT 181


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 137/271 (50%), Gaps = 20/271 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G C  NR+  A +  GEM+E  V PN VTYNVL+ G C+  +         T+R
Sbjct: 498 FTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGN---------TVR 548

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLH---VYSRAHQPQLSLDKLNFMKEK-----GICPT 113
            A ++ DEM  +G+ PD  ++  ++       R  + +  ++ L   ++K     G  P 
Sbjct: 549 -AFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPN 607

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           V TY++++  LC  G ++ AE L  EM+ +   P+  TY CF        +   A++L+ 
Sbjct: 608 VVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHD 667

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
            + E  L   N  +YNILI  F  L R+    E+  ++  SG+ PD  SY+ +I+  C +
Sbjct: 668 VLLEGFL--ANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRR 725

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
              KEA + +  M+ +G+ P  V +  L  G
Sbjct: 726 GDLKEAIKLWESMLNRGVNPDTVAYNFLIYG 756



 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 136/265 (51%), Gaps = 19/265 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI  +CK  ++D+A  FLG+M E G++  V  Y+ L++G C+   L          R
Sbjct: 393 YSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKL----------R 442

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +FDEM   G++P+V  ++ ++  Y +  +   +    + M  KGI P   T+++++
Sbjct: 443 AAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALI 502

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R+ +A +L GEMV   V P+  TYN   + +    +   A +L  +M E GL 
Sbjct: 503 SGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGL- 561

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKG--------SGLGPDLDSYTMLIHGLCEK 233
           VP+ ++Y  LI    +  R+   RE  ND++G         G  P++ +YT LI+GLC+ 
Sbjct: 562 VPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKI 621

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTF 258
               +A     EM+    LP + T+
Sbjct: 622 GLMDKAELLCREMLASNSLPNQNTY 646



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 139/318 (43%), Gaps = 46/318 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG-------------------------------- 29
           Y +L+ G CK+   +  E  + EMIE G                                
Sbjct: 288 YCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVK 347

Query: 30  ---VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
              V P++  YN L+N +C+   L            AE +F+ M  +G+ P+  ++SI++
Sbjct: 348 KFGVAPSLFVYNALINSMCKDGKLD----------EAESLFNNMGHKGLFPNDVTYSILI 397

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
             + +  +  ++L  L  M E GI  TV  YSS++   C  G++  A+ L  EM+ NG+ 
Sbjct: 398 DSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLK 457

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+   Y      Y    + + A +LY +M   G+  PN +++  LI      NRM    +
Sbjct: 458 PNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGIS-PNTYTFTALISGLCHANRMAEANK 516

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++ ++    + P+  +Y +LI G C++     A +   EM+EKGL+P   T+  L  GL 
Sbjct: 517 LFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLC 576

Query: 267 QSDMLRTWRRLKKKLDEE 284
            +  +   R     L  E
Sbjct: 577 STGRVSEAREFMNDLQGE 594



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 137/285 (48%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y   I G CK  R+  A      +  +G+  +V TY  L+ G+C+       E FE    
Sbjct: 253 YNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCK------VEEFEA--- 303

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             E++ +EM   G  P   + S ++    +      + D +N +K+ G+ P++  Y++++
Sbjct: 304 -GEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALI 362

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G++++AE L   M   G+ P+  TY+     +  R   + A+    +M E G+ 
Sbjct: 363 NSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGI- 421

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              ++ Y+ LI     L ++   + +++++  +GL P++  YT LI G C++ +   A +
Sbjct: 422 KATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFR 481

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            + EM  KG+ P   TF  L  GL  ++ +    +L  ++ E ++
Sbjct: 482 LYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNV 526



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 129/287 (44%), Gaps = 11/287 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+++   C++     A   +G M   G + +V TYNV + G+C+           + +
Sbjct: 217 VYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCK----------NQRV 266

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++ + +  +G+  DV ++  ++    +  + +   + +N M E G  P+ A  S++
Sbjct: 267 WEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNL 326

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  L   G I  A +L+ ++ + GV PS   YN            + A  L+  M   GL
Sbjct: 327 VDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGL 386

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  +Y+ILI  F    ++D+       +   G+   +  Y+ LI G C+  K + A 
Sbjct: 387 -FPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAK 445

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             F EMI  GL P  V + +L  G  +   L    RL  ++  + I+
Sbjct: 446 SLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGIS 492



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 121/275 (44%), Gaps = 11/275 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           + ++ G  +I +  MA     E++  G+ P+V  Y  ++  +C            K    
Sbjct: 184 SGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCEL----------KDFIR 233

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A +V   M   G +  V ++++ +    +  +   +++  N +  KG+   V TY ++V 
Sbjct: 234 AREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVL 293

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC     E  EE++ EM+  G  PS    +      R + +   A  L  ++K+ G+  
Sbjct: 294 GLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGV-A 352

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++  YN LI       ++D    ++N++   GL P+  +Y++LI   C++ K   A  +
Sbjct: 353 PSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHF 412

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
             +M E G+      + +L  G  +   LR  + L
Sbjct: 413 LGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSL 447



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 111/251 (44%), Gaps = 22/251 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEM---------IERGVEPNVVTYNVLLNGVCRRASLHP 52
           Y  LI G C   R+  A  F+ ++         IE G  PNVVTY  L+NG+C+      
Sbjct: 568 YRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIE-GCLPNVVTYTALINGLCKIG---- 622

Query: 53  SERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP 112
                  +  AE +  EM      P+  +++  L   +     + ++   + + E G   
Sbjct: 623 ------LMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE-GFLA 675

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
              TY+ +++  C  GRI++A E+L  M+ +G+ P   +Y+    EY  R D   A+KL+
Sbjct: 676 NTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLW 735

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
             M   G+  P+  +YN LI        +    E+ +D+   G+ P+  +Y  LIHG C 
Sbjct: 736 ESMLNRGV-NPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCL 794

Query: 233 KQKWKEACQYF 243
                    YF
Sbjct: 795 MSSVSSTADYF 805



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 99/247 (40%), Gaps = 34/247 (13%)

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           GI P + + S VL+   R  Q +++L   + +   G+ P V  Y++VV+ LC       A
Sbjct: 175 GILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRA 234

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL-----YRQMKED---------G 179
            E++G M  +G   S  TYN F +     +    A+++     Y+ ++ D         G
Sbjct: 235 REVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLG 294

Query: 180 LC--------------------VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
           LC                    VP+  + + L+        +    ++ N VK  G+ P 
Sbjct: 295 LCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPS 354

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
           L  Y  LI+ +C+  K  EA   F  M  KGL P  VT+  L     +   L        
Sbjct: 355 LFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLG 414

Query: 280 KLDEESI 286
           K+ E  I
Sbjct: 415 KMTEVGI 421


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 151/285 (52%), Gaps = 17/285 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI   CK   +  A + + E+++ G++ NVVTY  LL+G+C           E  ++
Sbjct: 398 YTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCE----------EGRMK 447

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+VF  M   G+ P+  +++ ++H + +A + + + D L  MKEK I P +  Y +++
Sbjct: 448 EAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTIL 507

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+  R+E+A+ L+GE+  +G+  +A  Y      Y     A  A+ L  +M + GL 
Sbjct: 508 WGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLI 567

Query: 182 VPNMHSYNILIGMFMALNRMDMVREI---WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
              + +Y  LI     L +  +V+E    +  +   GL P++  YT L+ GLC+   ++ 
Sbjct: 568 ATEV-TYCALID---GLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEV 623

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           A + F EM++KG++P K+ +  L  G ++   L+    L+ ++ E
Sbjct: 624 AKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIE 668



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 140/283 (49%), Gaps = 11/283 (3%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +L++   K+ R D++ +F  +M   G++ +V TYN++++ +C+          E  +  A
Sbjct: 225 ALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCK----------EGDLEMA 274

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             +F +M+  G  PD+ +++ ++  + +       +     MK+    P V TY++++ C
Sbjct: 275 RSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINC 334

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C   R+  A E L EM  NG+ P+  TY+ F   +        A+K +  M+   L  P
Sbjct: 335 FCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVAL-TP 393

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N  +Y  LI        +    ++  ++  +G+  ++ +YT L+ GLCE+ + KEA + F
Sbjct: 394 NEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVF 453

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             M+  G+ P + T+  L  G I++  +   + + K++ E+ I
Sbjct: 454 RAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCI 496



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 139/272 (51%), Gaps = 13/272 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI  +CK  R+  A  FL EM   G++PNVVTY+  ++  C+          E  ++
Sbjct: 328 YNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCK----------EGMLQ 377

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K F +MR   + P+  +++ ++    +A     +L  +  + + GI   V TY++++
Sbjct: 378 EAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALL 437

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+++AEE+   M+  GV P+ ETY      +   K+   A  + ++MKE   C
Sbjct: 438 DGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEK--C 495

Query: 182 V-PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           + P++  Y  ++      +R++  + +  ++K SG+  +   YT L+    +  +  EA 
Sbjct: 496 IKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEAL 555

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
               EM++ GL+  +VT+  L  GL +S +++
Sbjct: 556 TLLEEMLDLGLIATEVTYCALIDGLCKSGLVQ 587



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 135/285 (47%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I   CK   ++MA     +M E G  P++VTYN L++G  +   L           
Sbjct: 258 YNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLD---------- 307

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F++M+    +PDV +++ +++ + +  +   + + L+ MK  G+ P V TYS+ +
Sbjct: 308 ECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFI 367

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +++A +   +M R  + P+  TY           +   A+KL  ++ + G+ 
Sbjct: 368 DAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIK 427

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N+ +Y  L+       RM    E++  +  +G+ P+ ++YT L+HG  + ++ + A  
Sbjct: 428 L-NVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKD 486

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM EK + P  + + T+  GL     L   + L  ++ E  I
Sbjct: 487 ILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGI 531



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 1/202 (0%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +  A + F +MR   + P   S + +LH  S+  +  LS      M   GI  +V TY+ 
Sbjct: 201 LEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNI 260

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC  G +E A  L  +M   G  P   TYN     +      +  + ++ QMK D 
Sbjct: 261 MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMK-DA 319

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C P++ +YN LI  F    RM    E  +++K +GL P++ +Y+  I   C++   +EA
Sbjct: 320 DCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEA 379

Query: 240 CQYFVEMIEKGLLPQKVTFETL 261
            ++FV+M    L P + T+ +L
Sbjct: 380 IKFFVDMRRVALTPNEFTYTSL 401



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 10/179 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK   +  A    G M E G++PNV  Y  L++G+C+               
Sbjct: 573 YCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKN----------NCFE 622

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+K+FDEM  +G+ PD  +++ ++    +    Q +L+  + M E G+   +  Y++++
Sbjct: 623 VAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALI 682

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             L   G+++ A  LL EM+  GV P    Y C  K+Y      + A++L  +M + G+
Sbjct: 683 WGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGM 741



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 113/252 (44%), Gaps = 11/252 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++++G C  +R++ A+  +GE+ E G+  N V Y  L++   +              
Sbjct: 502 LYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQ----------A 551

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + +EM   G+     ++  ++    ++   Q ++     M E G+ P VA Y+++
Sbjct: 552 TEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTAL 611

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  LC     E A++L  EM+  G+ P    Y           +   A+ L  +M E G+
Sbjct: 612 VDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGM 671

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            + ++H+Y  LI       ++   R + +++ G G+ PD   Y  LI       K  EA 
Sbjct: 672 EL-DLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEAL 730

Query: 241 QYFVEMIEKGLL 252
           +   EM ++G++
Sbjct: 731 ELQNEMAKRGMI 742



 Score = 43.9 bits (102), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%)

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P   S N L+     + R D+ R+ + D+  +G+   + +Y ++I  LC++   + A   
Sbjct: 218 PKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSL 277

Query: 243 FVEMIEKGLLPQKVTFETLYRG 264
           F +M E G  P  VT+ +L  G
Sbjct: 278 FTQMKEAGFTPDIVTYNSLIDG 299


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 135/300 (45%), Gaps = 47/300 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G+CKI+ +  AE+   +MI+    PNV TYN  LNG+ R+            I 
Sbjct: 485 YSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGR----------IA 534

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYS------RAHQ--------------------- 94
           +A+ V++EM   G  PDV ++S ++H +S      +AH+                     
Sbjct: 535 DAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLL 594

Query: 95  --------PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                   P  + +    M E+G  P   TY++++   C+ G+IE A E+  EMV  G  
Sbjct: 595 HGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHD 654

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P    YNC  K +  R    G  K   Q+     C P+  S+NI+I       R+D   E
Sbjct: 655 PDVVAYNCLLKGFF-RAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVE 713

Query: 207 IWNDV-KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           ++  + +  G  PDL +Y  LI GLC +Q+  EA + F E+    L P    F  L   +
Sbjct: 714 VFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAI 773



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 128/263 (48%), Gaps = 10/263 (3%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           S+I   CK  R+D A   L  MI+RG  P++ T+++L+N +C+   +  ++ F + +   
Sbjct: 379 SVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGM--- 435

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFM-KEKGICPTVATYSSVVK 122
                + ++        S++ +L+   +A +   +    + M  E+   P V +YS ++ 
Sbjct: 436 -----DRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILID 490

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C    +  AE+L  +M+     P+  TYN F      +     A  +Y +M   G C 
Sbjct: 491 GFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAG-CS 549

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ +Y+ LI  F    + D   E++  +   G  P+  +Y  L+HGLC++ K  EA + 
Sbjct: 550 PDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHEL 609

Query: 243 FVEMIEKGLLPQKVTFETLYRGL 265
           F +M+E+G  P +VT+ TL  G 
Sbjct: 610 FRKMVERGCDPDRVTYTTLLYGF 632



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 146/346 (42%), Gaps = 64/346 (18%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEM-IERGVEPNVVTYNVLLNGVCRRASLHPS----ER 55
           +Y+ ++   CK+  +D A +   EM +E     N V +   L+G+C+   +  +      
Sbjct: 271 IYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRT 330

Query: 56  FEKTIRNAEKVFD--------------------EMRVRGIEPDVTSFSIVLHVYSRAHQP 95
            ++++ +++ V+D                    E+  R I+P   +   V+    +A + 
Sbjct: 331 MQESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRV 390

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR------------- 142
             +L  L  M ++G CP +AT+S ++  LC   +I++A+E L  M R             
Sbjct: 391 DSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYN 450

Query: 143 ---NGVC----------------------PSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
              N +C                      P   +Y+     +    +   A KLY+QM  
Sbjct: 451 SLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMI- 509

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
           D  CVPN+ +YN  +   M   R+   + ++ ++  +G  PD+ +Y+ LIHG    +K  
Sbjct: 510 DLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHD 569

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           +A + F  MI +G  P  VT+  L  GL +         L +K+ E
Sbjct: 570 QAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVE 615



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 112/284 (39%), Gaps = 17/284 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+   C     D A RF GEM+++G +P+   Y  +    C +A+    E      R
Sbjct: 167 YAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTE--CLKATGKEGEFSRVFGR 224

Query: 62  NAEK-VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKL-NFMKEKGICPTVATYSS 119
           + EK V  EM ++  +  + +F I            +   KL   M + G  P    YS 
Sbjct: 225 DLEKRVAVEMMLK--KALLVNFVI--------QDKAIEASKLFRAMVKSGCKPDATIYSY 274

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCP-SAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +V   C    +++A +L  EM      P +   +  F            A +  R M+E 
Sbjct: 275 MVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQES 334

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
                +   Y++LI + +   R+D   E   ++ G  + P   +   +I  LC+  +   
Sbjct: 335 --LSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDS 392

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           A      MI++G  P   T   L   L ++D ++  +   + +D
Sbjct: 393 ALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMD 436



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 86/203 (42%), Gaps = 2/203 (0%)

Query: 67  FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS 126
           F  ++ R  + DV +++ +L    R    + +      M  +G+ P   TY+ +V+  C 
Sbjct: 117 FRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCY 176

Query: 127 CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH 186
               ++A    GEMV  G  PS+  Y    +  +         +++ +  E  + V  M 
Sbjct: 177 ERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMML 236

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
              +L+  F+  ++     +++  +  SG  PD   Y+ ++   C+ +   EA + F+EM
Sbjct: 237 KKALLVN-FVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEM 295

Query: 247 IEKGLLP-QKVTFETLYRGLIQS 268
             +   P   V +     GL +S
Sbjct: 296 AVESKAPLNNVAWTAFLSGLCKS 318



 Score = 41.2 bits (95), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 4/119 (3%)

Query: 143 NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202
           +G     ET     K  R   D   A+  +R ++       ++ +YN L+   +    + 
Sbjct: 91  DGKSSCRETVGAVIKHLR---DGGEALTFFRWLQARNF-KHDVFTYNCLLDKLIRHRDLK 146

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
              +++  +   G+ P+  +Y +L+   C ++   EA ++F EM++KG  P    ++ +
Sbjct: 147 QAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKV 205


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 153/312 (49%), Gaps = 27/312 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y ++I GWCK+ R+D A +   EM+ +G V+P  V YN L+ G C +  L  +  +   +
Sbjct: 553 YGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRM 612

Query: 61  -------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                      A ++ +EM  +G+ PDV +++I+++ + +    
Sbjct: 613 VERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNV 672

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + +L+    M  +G+  TV TY++++  L   G++++ ++L  E VR G+ P    YN  
Sbjct: 673 KKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 732

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +    + + A ++  +M++  +  P+  +YN L+     L R+D  R++ +++   G
Sbjct: 733 INSHSTSGNIDRAFEIMGEMEKKRIA-PDDVTYNTLMRGLCLLGRVDEARKLIDEMTERG 791

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           + PDL +Y  LI G   K   K+A +   EM+ KG  P  +T+  L +GL ++       
Sbjct: 792 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 851

Query: 276 RLKKKLDEESIT 287
            + K++ E  IT
Sbjct: 852 NMVKEMVENGIT 863



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 142/307 (46%), Gaps = 52/307 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVE----------------------------- 31
           MY +LI G+C   ++D A  +   M+ERGV                              
Sbjct: 588 MYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEM 647

Query: 32  ------PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85
                 P+V TYN+L+NG C+          E  ++ A ++F+ M  RG+   V +++ +
Sbjct: 648 GGKGLAPDVFTYNILINGHCK----------EGNVKKALEIFENMSRRGVRATVVTYTAL 697

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           ++  S+  Q Q +    +    +GI P +  Y++++    + G I+ A E++GEM +  +
Sbjct: 698 IYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRI 757

Query: 146 CPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMD 202
            P   TYN   +     GR D   A KL  +M E G+  P++ +YN LI G  M  +  D
Sbjct: 758 APDDVTYNTLMRGLCLLGRVDE--ARKLIDEMTERGI-QPDLVTYNTLISGYSMKGDVKD 814

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
            +R I N++   G  P L +Y  LI GLC+  +  +A     EM+E G+ P   T+ +L 
Sbjct: 815 ALR-IRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 873

Query: 263 RGLIQSD 269
            GL   D
Sbjct: 874 EGLTTED 880



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 6/218 (2%)

Query: 48  ASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE 107
           ASLHP      +        D  R+R +    T+F+I+L     A +P  +L+ L  M  
Sbjct: 453 ASLHPLLSALPSAPAFALFADMFRLR-LPLCTTTFNIMLRHLCSAGKPARALELLRQMPR 511

Query: 108 KGICPTVATYSSVVKCLCSCGRIEDAEELLGEM-VRNGVCPSAETYNCFFKEYRGRKDAN 166
               P   TY++V+   CS GR++ A +++ EM  R G+ P+  TY      +      +
Sbjct: 512 ----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVD 567

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            A+K++ +M   G   P    YN LIG +    ++D      + +   G+   + +Y +L
Sbjct: 568 EAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLL 627

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           +H L    +  EA +   EM  KGL P   T+  L  G
Sbjct: 628 VHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILING 665


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 136/290 (46%), Gaps = 27/290 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKTI 60
           Y+ LI G+CKI+ +  AE+   +MI+    PNV TYN  LNG+ R+  +  ++  +E+ I
Sbjct: 160 YSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMI 219

Query: 61  R------------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     A ++F+ M  RG  P+  +++ +LH   +  +P 
Sbjct: 220 SAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPD 279

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + +    M E+G  P   TY++++   C+ G+IE A E+  EMV  G  P    YNC  
Sbjct: 280 EAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLL 339

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV-KGSG 215
           K +        A +L++ M     C P+  S+NI+I       R+D   E++  + +  G
Sbjct: 340 KGFFRAGKPGEARQLFQVMVSRE-CKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHG 398

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
             PDL +Y  LI GLC +Q+  EA + F E+    L P    F  L   +
Sbjct: 399 CSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAM 448



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 127/263 (48%), Gaps = 10/263 (3%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           S+I   CK  R+D A   L  MI+RG  P++ T+++L+N +C+   +  ++ F + +   
Sbjct: 54  SVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRT 113

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFM-KEKGICPTVATYSSVVK 122
                   +        S++ +L+   +A +   +    + M  E+ + P V +YS ++ 
Sbjct: 114 --------ISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILID 165

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C    +  AE+L  +M+     P+  TYN F      +     A  +Y +M   G C 
Sbjct: 166 GFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAG-CS 224

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ +Y+ LI  F    + D   E++  +   G  P+  +Y  L+HGLC++ K  EA + 
Sbjct: 225 PDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHEL 284

Query: 243 FVEMIEKGLLPQKVTFETLYRGL 265
           F +M+E+G  P KVT+ TL  G 
Sbjct: 285 FRKMVERGCDPDKVTYTTLLYGF 307



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 135/293 (46%), Gaps = 27/293 (9%)

Query: 2   YTSLIYGWCKINRIDMAE---RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK 58
           +T+ + G CK  +I+ A    R + E +     P+  T + ++  +C+            
Sbjct: 14  WTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGR--------- 64

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT-- 116
            + +A  + + M  RG  PD+ + S++++   +A + Q + + L     +G+  T++T  
Sbjct: 65  -VDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFL-----QGMNRTISTRA 118

Query: 117 -----YSSVVKCLCSCGRIEDAEELLGEMVRN-GVCPSAETYNCFFKEYRGRKDANGAMK 170
                Y+S++  LC   ++  A  +   MV    V P   +Y+     +    +   A K
Sbjct: 119 SSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEK 178

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           LY+QM  D  CVPN+ +YN  +   M   R+   + ++ ++  +G  PD+ +Y+ LIHG 
Sbjct: 179 LYKQMI-DLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGF 237

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
              +K  +A + F  MI +G  P  VT+  L  GL +         L +K+ E
Sbjct: 238 SLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVE 290


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 141/281 (50%), Gaps = 11/281 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  ++ G C+  +++ A     +M+++ + PNVVTYN L+NG+C+             I
Sbjct: 151 IYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWR----------I 200

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++F EM  +G  P   S++ ++  + +      + D  + M      P V TY+++
Sbjct: 201 ETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTL 260

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L   G+++ A E+L  MV+ GV P+  TY+C    +   +  + A KL  QM   G+
Sbjct: 261 IDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGI 320

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P + +YNIL+      ++++   +++  +      P + +Y  L+  LC  ++   A 
Sbjct: 321 -APTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAH 379

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           + + EMI KG  P  +T++TL  GL ++  +   + L +K+
Sbjct: 380 RLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 420



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 135/270 (50%), Gaps = 12/270 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I   CK+NR++ A R L E + R   P+ +TY  ++  +C+           K I 
Sbjct: 83  YSTIINWLCKLNRVEEA-RELIEKMARYAPPDALTYGPIVERLCK----------TKRID 131

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A    +EM  RGI+PD   ++ VL    +  + + +      M ++ I P V TY++++
Sbjct: 132 DALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLI 191

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   RIE A EL  EM   G  P+  +YN     +  +KD   A  ++ +M     C
Sbjct: 192 NGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSN-C 250

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN+ +Y  LI       ++    E+ + +   G+ P++ +Y+ LI G C+ ++  EA +
Sbjct: 251 VPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHK 310

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              +M+ +G+ P  VT+  L   L ++D L
Sbjct: 311 LLEQMVTQGIAPTVVTYNILLNSLCRADKL 340



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 127/257 (49%), Gaps = 15/257 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK  RI+ A     EM  +G  P  V+YN L++G C++          K + 
Sbjct: 187 YNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKK----------KDLV 236

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ VFD+M      P+V +++ ++   S++ + Q + + L+ M +KG+ P VATYS ++
Sbjct: 237 AAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLI 296

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R+++A +LL +MV  G+ P+  TYN              A KL+R M +   C
Sbjct: 297 DGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQR-RC 355

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +YN L+       ++D    ++ ++   G  PD  +Y  L  GL    K  EA  
Sbjct: 356 HPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEA-- 413

Query: 242 YFVEMIEKGLLPQKVTF 258
              E++EK  L ++  F
Sbjct: 414 --QELMEKMKLTKRNPF 428



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 134/276 (48%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++   CK  RID A   + EM  RG++P+   YN +L+G+C+          E+ + 
Sbjct: 117 YGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQ----------EEKVE 166

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F++M  + I P+V +++ +++   +A + + + +    M  KG  PT  +Y++++
Sbjct: 167 EARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLI 226

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    +  A+++  +MVR+   P+  TY               A ++   M + G+ 
Sbjct: 227 DGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGV- 285

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y+ LI  F  + R+D   ++   +   G+ P + +Y +L++ LC   K ++A +
Sbjct: 286 TPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFK 345

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F  M ++   P  VT+ TL R L     L    RL
Sbjct: 346 LFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRL 381



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 127/286 (44%), Gaps = 12/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + ++  G+ K  R++  +     M+E G       Y +L++ +C+  +            
Sbjct: 13  FNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFD---------- 62

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+   MR++  +    ++S +++   + ++ + + + +  M      P   TY  +V
Sbjct: 63  EAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAP-PDALTYGPIV 121

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC   RI+DA   + EM   G+ P A  YN         +    A  L+ +M +  + 
Sbjct: 122 ERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRIN 181

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN LI       R++   E++ ++ G G  P   SY  LI G C+K+    A  
Sbjct: 182 -PNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKD 240

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            F +M+    +P  VT+ TL  GL +S  ++    +   + ++ +T
Sbjct: 241 VFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVT 286



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 95/231 (41%), Gaps = 37/231 (16%)

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG- 128
           M +R + P   +F+ V   +++A + +   +    M E G     + Y  ++ CLC  G 
Sbjct: 1   MALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGN 60

Query: 129 ----------------------------------RIEDAEELLGEMVRNGVCPSAETYNC 154
                                             R+E+A EL+ +M R    P A TY  
Sbjct: 61  FDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAP-PDALTYGP 119

Query: 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
             +     K  + A+    +M   G+  P+   YN ++       +++  R ++  +   
Sbjct: 120 IVERLCKTKRIDDALATVEEMATRGI-KPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQ 178

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            + P++ +Y  LI+GLC+  + + A + F EM  KG +P +V++ TL  G 
Sbjct: 179 RINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGF 229


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 153/312 (49%), Gaps = 27/312 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y ++I GWCK+ R+D A +   EM+ +G V+P  V YN L+ G C +  L  +  +   +
Sbjct: 558 YGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRM 617

Query: 61  -------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                      A ++ +EM  +G+ PDV +++I+++ + +    
Sbjct: 618 VERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNV 677

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + +L+    M  +G+  TV TY++++  L   G++++ ++L  E VR G+ P    YN  
Sbjct: 678 KKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 737

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +    + + A ++  +M++  +  P+  +YN L+     L R+D  R++ +++   G
Sbjct: 738 INSHSTSGNIDRAFEIMGEMEKKRIA-PDDVTYNTLMRGLCLLGRVDEARKLIDEMTERG 796

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           + PDL +Y  LI G   K   K+A +   EM+ KG  P  +T+  L +GL ++       
Sbjct: 797 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 856

Query: 276 RLKKKLDEESIT 287
            + K++ E  IT
Sbjct: 857 NMVKEMVENGIT 868



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 142/307 (46%), Gaps = 52/307 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVE----------------------------- 31
           MY +LI G+C   ++D A  +   M+ERGV                              
Sbjct: 593 MYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEM 652

Query: 32  ------PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85
                 P+V TYN+L+NG C+          E  ++ A ++F+ M  RG+   V +++ +
Sbjct: 653 GGKGLAPDVFTYNILINGHCK----------EGNVKKALEIFENMSRRGVRATVVTYTAL 702

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           ++  S+  Q Q +    +    +GI P +  Y++++    + G I+ A E++GEM +  +
Sbjct: 703 IYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRI 762

Query: 146 CPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMD 202
            P   TYN   +     GR D   A KL  +M E G+  P++ +YN LI G  M  +  D
Sbjct: 763 APDDVTYNTLMRGLCLLGRVDE--ARKLIDEMTERGI-QPDLVTYNTLISGYSMKGDVKD 819

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
            +R I N++   G  P L +Y  LI GLC+  +  +A     EM+E G+ P   T+ +L 
Sbjct: 820 ALR-IRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 878

Query: 263 RGLIQSD 269
            GL   D
Sbjct: 879 EGLTTED 885



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 6/218 (2%)

Query: 48  ASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE 107
           ASLHP      +        D  R+R +    T+F+I+L     A +P  +L+ L  M  
Sbjct: 458 ASLHPLLSALPSAPAFALFADMFRLR-LPLCTTTFNIMLRHLCSAGKPARALELLRQMPR 516

Query: 108 KGICPTVATYSSVVKCLCSCGRIEDAEELLGEM-VRNGVCPSAETYNCFFKEYRGRKDAN 166
               P   TY++V+   CS GR++ A +++ EM  R G+ P+  TY      +      +
Sbjct: 517 ----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVD 572

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            A+K++ +M   G   P    YN LIG +    ++D      + +   G+   + +Y +L
Sbjct: 573 EAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLL 632

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           +H L    +  EA +   EM  KGL P   T+  L  G
Sbjct: 633 VHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILING 670


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 147/321 (45%), Gaps = 38/321 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  LI G+CK   ID A   L  M    V P+VVTYN +L  +C    L  +        
Sbjct: 179 YNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQL 235

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +  +  A K+ DEMR +G +PDV +++++++   +  +  
Sbjct: 236 QRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLD 295

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++  LN M   G  P V T++ +++ +CS GR  DAE LL +M+R G  PS  T+N   
Sbjct: 296 EAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILI 355

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                ++    A+ +  +M + G CVPN  SYN L+  F    +MD   E    +   G 
Sbjct: 356 NFLCRKRLLGRAIDVLEKMPKHG-CVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGC 414

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ-------SD 269
            PD+ +Y  L+  LC+  K   A +   ++  KG  P  +T+ T+  GL +        +
Sbjct: 415 YPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVE 474

Query: 270 MLRTWRRLKKKLDEESITFGS 290
           +L   RR  K L  + IT+ +
Sbjct: 475 LLEEMRR--KGLKPDIITYST 493



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 133/261 (50%), Gaps = 11/261 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++   C   R   AER L +M+ +G  P+VVT+N+L+N +CR+          + +  A 
Sbjct: 319 ILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRK----------RLLGRAI 368

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            V ++M   G  P+  S++ +LH + +  +   +++ L  M  +G  P + TY++++  L
Sbjct: 369 DVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTAL 428

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G+++ A E+L ++   G  P   TYN              A++L  +M+  GL  P+
Sbjct: 429 CKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGL-KPD 487

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y+ L+       ++D   +I++D++G  + P   +Y  ++ GLC+ Q+   A  +  
Sbjct: 488 IITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLA 547

Query: 245 EMIEKGLLPQKVTFETLYRGL 265
            M+EKG  P + T+  L  G+
Sbjct: 548 YMVEKGCKPTEATYTILIEGI 568



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 136/292 (46%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI- 60
           YT LI   C  + +  A + L EM ++G +P+VVTYNVL+NG+C+   L  + +F   + 
Sbjct: 246 YTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMP 305

Query: 61  ------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                    +AE++  +M  +G  P V +F+I+++   R     
Sbjct: 306 SYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLG 365

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++D L  M + G  P   +Y+ ++   C   +++ A E L  MV  G  P   TYN   
Sbjct: 366 RAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLL 425

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A+++  Q+   G C P + +YN +I     + + +   E+  +++  GL
Sbjct: 426 TALCKDGKVDAAVEILNQLSSKG-CSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGL 484

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            PD+ +Y+ L+ GL  + K  EA + F +M    + P  VT+  +  GL ++
Sbjct: 485 KPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKA 536



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 124/252 (49%), Gaps = 14/252 (5%)

Query: 20  RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDV 79
           +FL  MI +G  P+V+    L+ G CR      + R  + + N+          G  PDV
Sbjct: 127 KFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENS----------GAVPDV 176

Query: 80  TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
            ++++++  Y ++ +   +L+ L  M    + P V TY+++++ LC  G++++A E+L  
Sbjct: 177 ITYNVLIGGYCKSGEIDKALEVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEVLDR 233

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
            ++    P   TY    +          AMKL  +M++ G C P++ +YN+LI       
Sbjct: 234 QLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKG-CKPDVVTYNVLINGICKEG 292

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           R+D   +  N++   G  P++ ++ +++  +C   +W +A +   +M+ KG  P  VTF 
Sbjct: 293 RLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFN 352

Query: 260 TLYRGLIQSDML 271
            L   L +  +L
Sbjct: 353 ILINFLCRKRLL 364


>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
 gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
          Length = 715

 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 144/296 (48%), Gaps = 27/296 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKTI 60
           +TSLI G CK   I  A   L EM+++G +PNV T+  L++G+C++     + R F K +
Sbjct: 304 FTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLV 363

Query: 61  RN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           R+                         AE +   M+ +G+ P+  +++ ++  +S+A   
Sbjct: 364 RSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNF 423

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + + + ++ M ++G    + TY++ +  LC  GR  +A +LL +  R G+     TY   
Sbjct: 424 EKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQADTVTYTIL 483

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
             E   R D   A+  + +M + G+  P+MH+YN LI  F    RM+   +++ +  G G
Sbjct: 484 ISELCRRADTREALVFFSKMFKAGV-QPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLG 542

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           L P  ++YT +I G C  +    A ++F  M + G  P  +T+  L  GL +   L
Sbjct: 543 LVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKESKL 598



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 137/325 (42%), Gaps = 58/325 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-------- 53
           YTS+I+G+CK ++++ AE  L  M E+G+ PN  TY  L++G  +  +   +        
Sbjct: 375 YTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMG 434

Query: 54  -ERFEKTIRNAEKVFDEMRVRG----------------IEPDVTSFSIVLHVYSRAHQPQ 96
            E F   I       D +  +G                ++ D  +++I++    R    +
Sbjct: 435 KEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQADTVTYTILISELCRRADTR 494

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   + M + G+ P + TY++++       R+E++E+L  E V  G+ P+ ETY    
Sbjct: 495 EALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMI 554

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y   ++ + A+K + +M + G C P+  +Y  LI      +++D   +++  +   GL
Sbjct: 555 CGYCRDRNVSLALKFFNRMSDHG-CTPDSLTYGALISGLCKESKLDEACQLYEAMVDKGL 613

Query: 217 GP--------------DLDSYT------------------MLIHGLCEKQKWKEACQYFV 244
            P                DS T                   LI  LC ++K   A  +F 
Sbjct: 614 SPCEVTRLTLAYEYCKQDDSATAMVILERLDKKLWIRTVNTLIRKLCSERKVGMAVLFFH 673

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSD 269
           ++++K     +VT         +S+
Sbjct: 674 KLLDKDQNVDRVTLTAFTTACYESN 698



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 122/279 (43%), Gaps = 15/279 (5%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           +  AE    EM  RGV P+ V+Y ++    CR   +  ++R+ K          +M  RG
Sbjct: 212 VGYAENVFDEMRVRGVCPDSVSYKLMAIAYCRMGRISDTDRWLK----------DMVRRG 261

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
              D  + ++++  +             +   E G+ P +  ++S++  LC  G I+ A 
Sbjct: 262 FVVDNATCTLMISTFCEKGFASRVFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAF 321

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           E+L EMV+ G  P+  T+         +     A +L+ ++       PN+H+Y  +I  
Sbjct: 322 EMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHG 381

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
           +   ++++    + + +K  GL P+  +YT LI G  +   +++A +    M ++G    
Sbjct: 382 YCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSAN 441

Query: 255 KVTFETLYRGLIQSD-MLRTWRRLKK----KLDEESITF 288
             T+      L +    L   + LKK     L  +++T+
Sbjct: 442 IFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQADTVTY 480


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 149/296 (50%), Gaps = 16/296 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI   CK  ++  ++  L  M ++GV+P+VV Y++L++G C              ++
Sbjct: 223 YNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGE----------VQ 272

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++F  M   G+ PDV S++I+++   +  +   +++ L  M  K + P   TYSS++
Sbjct: 273 KAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLI 332

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GRI    +L  EM   G   +  TYN         ++ + A+ L+ +MKE G+ 
Sbjct: 333 DGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGI- 391

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN ++Y  LI       R+   + ++  +   G   D+ +YT++I GLC++  + EA  
Sbjct: 392 QPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALA 451

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG-SEFQNYH 296
              +M + G +P  VTFE + R L++ D         +KL  E I  G   F+N+H
Sbjct: 452 MKSKMEDNGCIPNAVTFEIIIRSLLEKD----ENDKAEKLLHEMIAKGLLPFRNFH 503



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 139/281 (49%), Gaps = 11/281 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY+++I G CK   +D A     EM  RG+ P+V+TY  L+ G C    L          
Sbjct: 152 MYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQL---------- 201

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + +EM ++ I P++ +++ ++    +  + + S + L  M +KG+ P V  YS +
Sbjct: 202 MEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSIL 261

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G ++ A+++   MV+ GV P   +YN         K  + AM L R+M    +
Sbjct: 262 MDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNM 321

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +P+  +Y+ LI     L R+  + ++  ++   G   +L +Y  L+ GLC+ Q   +A 
Sbjct: 322 -IPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAI 380

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
             F++M E+G+ P K T+  L  GL +   L+  + L + L
Sbjct: 381 ALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHL 421



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 138/285 (48%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+ G CKI     A + L  + +R   P+VV Y+ +++G+C+          +K + 
Sbjct: 118 YGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCK----------DKLVD 167

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++ EM  RGI PDV +++ ++  +  A Q   +   LN M  K I P + TY++++
Sbjct: 168 EAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLI 227

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++++++ LL  M + GV P    Y+     Y    +   A +++  M + G+ 
Sbjct: 228 DTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVN 287

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+++SYNI+I       R+D    +  ++    + PD  +Y+ LI GLC+  +      
Sbjct: 288 -PDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILD 346

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM  +G     VT+ +L  GL ++  L     L  K+ E  I
Sbjct: 347 LTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGI 391



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 140/312 (44%), Gaps = 46/312 (14%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C + ++  +   LG++++ G +PN +  N L+ G+C +  +  S  F        
Sbjct: 51  LINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFH------- 103

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
              D++  +G + D  S+ I+L+   +  + + ++  L  ++++   P V  YS+++  L
Sbjct: 104 ---DKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGL 160

Query: 125 CS-----------------------------------CGRIEDAEELLGEMVRNGVCPSA 149
           C                                     G++ +A  LL EM+   + P+ 
Sbjct: 161 CKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNI 220

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
            TYN              +  L   M + G+  P++  Y+IL+  +  +  +   ++I+ 
Sbjct: 221 YTYNTLIDTLCKEGKVKESKNLLAVMTKKGV-KPDVVIYSILMDGYCLVGEVQKAKQIFL 279

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            +  +G+ PD+ SY ++I+GLC+ ++  EA     EM+ K ++P  VT+ +L  GL +  
Sbjct: 280 VMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLG 339

Query: 270 MLRTWRRLKKKL 281
            + T   L K++
Sbjct: 340 RITTILDLTKEM 351



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 94/209 (44%), Gaps = 1/209 (0%)

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
           +M  +GI PD+ + SI+++ +    Q   S   L  + + G  P     ++++K LC  G
Sbjct: 35  QMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKG 94

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
            ++ +     ++V  G      +Y           +   A+KL R + ED    P++  Y
Sbjct: 95  EVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTI-EDRSTRPDVVMY 153

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           + +I        +D   ++++++   G+ PD+ +YT LI G C   +  EA     EMI 
Sbjct: 154 STIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMIL 213

Query: 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           K + P   T+ TL   L +   ++  + L
Sbjct: 214 KNINPNIYTYNTLIDTLCKEGKVKESKNL 242



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 4/196 (2%)

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQ-LSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
           + +R I P +    I+  +    H P  +SL K   M+ KGI P + T S ++ C C  G
Sbjct: 2   LLLRHIPPIIEFGKILGSLVKMKHYPTVISLSKQ--MEAKGIVPDLVTLSILINCFCHLG 59

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           ++  +  +LG++++ G  P+    N   K    + +   ++  + ++   G  +  + SY
Sbjct: 60  QMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQV-SY 118

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
            IL+     +       ++   ++     PD+  Y+ +I GLC+ +   EA   + EM  
Sbjct: 119 GILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNA 178

Query: 249 KGLLPQKVTFETLYRG 264
           +G+ P  +T+ TL  G
Sbjct: 179 RGIFPDVITYTTLICG 194



 Score = 43.9 bits (102), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 1/118 (0%)

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
            + L +QM+  G+ VP++ + +ILI  F  L +M     +   +   G  P+      L+
Sbjct: 29  VISLSKQMEAKGI-VPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLM 87

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
            GLC K + K++  +  +++ +G    +V++  L  GL +    R   +L + +++ S
Sbjct: 88  KGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRS 145


>gi|357129397|ref|XP_003566348.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Brachypodium distachyon]
          Length = 649

 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 140/258 (54%), Gaps = 12/258 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+  WC    +  A R   +M+E+G++P+VV +N +++G+ R       +R  + + 
Sbjct: 344 YTALMLAWCNARNLVEAGRVWNDMLEKGMKPDVVVHNTMIDGLLR------GQRRPEAV- 396

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K+F+ M+ +G  P+V ++++++  + +  +  +++     M+  G  P VATY+ ++
Sbjct: 397 ---KMFELMKAKGPPPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLL 453

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               +  R++    +L EM + G  P   TYN   K    R   + A+++Y++M   GL 
Sbjct: 454 VGYGNAKRMDRVTAMLEEMAQKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGL- 512

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            P +H+YN+++   F+      M   +W ++   G+ PD++SYT+ I+G     +  EAC
Sbjct: 513 EPTIHTYNMMMKSYFLGGRNYAMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPAEAC 572

Query: 241 QYFVEMIEKGLLPQKVTF 258
           ++  EMI+KG+   ++ +
Sbjct: 573 KFLEEMIQKGMKAPQIDY 590



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 113/242 (46%), Gaps = 4/242 (1%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           I+NA  VF+ MRV G +  V SF+ +L   ++    + +    + M+++   P + +Y++
Sbjct: 288 IKNAVGVFEMMRVHGFDDGVESFNCLLVALAQEGLGKEAARVFDRMRDQ-YTPDLRSYTA 346

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMKED 178
           ++   C+   + +A  +  +M+  G+ P    +N       RG++    A+K++  MK  
Sbjct: 347 LMLAWCNARNLVEAGRVWNDMLEKGMKPDVVVHNTMIDGLLRGQRRPE-AVKMFELMKAK 405

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G   PN+ +Y +LI       ++DM    + +++ +G  P++ +YT L+ G    ++   
Sbjct: 406 GP-PPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLLVGYGNAKRMDR 464

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
                 EM +KG  P   T+  L + L   +M     R+ KK+  + +       N   K
Sbjct: 465 VTAMLEEMAQKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTIHTYNMMMK 524

Query: 299 PY 300
            Y
Sbjct: 525 SY 526



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 13/166 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ G+    R+D     L EM ++G  P+  TYN L+  +  R              
Sbjct: 449 YTCLLVGYGNAKRMDRVTAMLEEMAQKGCPPDGRTYNALIKLLTNR----------NMPD 498

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP-QLSLDKLNFMKEKGICPTVATYSSV 120
           +A +++ +M  +G+EP + ++++++  Y    +   +       M  KGICP V +Y+  
Sbjct: 499 DAVRIYKKMITKGLEPTIHTYNMMMKSYFLGGRNYAMGCAVWEEMHRKGICPDVNSYTVF 558

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR--GRKD 164
           +      GR  +A + L EM++ G+      YN F  ++   G+ D
Sbjct: 559 INGHIRHGRPAEACKFLEEMIQKGMKAPQIDYNKFAADFSKAGKPD 604


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 135/268 (50%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+  +CK  ++   +     M+++G++PN VTYN L++G C            K + 
Sbjct: 298 FNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYC----------LVKEVN 347

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F+ M   G+ PD+ S+SI+++ + +  +   +++    M  K I P V TYSS++
Sbjct: 348 KAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLI 407

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GRI  A +L+ +M   GV P+  TYN            + A+ L  + K+ G  
Sbjct: 408 DGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGF- 466

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ILI       +++  R+++ D+   G   D+ +YT++I G C +  + EA  
Sbjct: 467 QPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALA 526

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              +M + G +P   T+E +   L + D
Sbjct: 527 LLSKMEDNGCIPDAKTYEIIILSLFKKD 554



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 141/289 (48%), Gaps = 19/289 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR----RASLHPSERFE 57
           +T+L  G C   +I  A  F  +++  G   + ++Y  L++G+C+    RA+L   +R +
Sbjct: 158 FTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVD 217

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
             +              ++P+V  ++ ++    +      + D  + M  KGI P V TY
Sbjct: 218 GNL--------------VQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTY 263

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           S+++   C  G+++DA +L  +M+   + P   T+N     +           ++  M +
Sbjct: 264 SALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMK 323

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G+  PN  +YN L+  +  +  ++  + I+N +   G+ PD+ SY+++I+G C+ +K+ 
Sbjct: 324 QGI-KPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFD 382

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           EA   F EM  K ++P  VT+ +L  GL +S  +    +L  ++ +  +
Sbjct: 383 EAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGV 431



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 135/283 (47%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI G+C + ++  A     +MI   ++P+V T+N+L+N  C+   +          +
Sbjct: 263 YSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKM----------K 312

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             + VFD M  +GI+P+  +++ ++  Y    +   +    N M + G+ P + +YS ++
Sbjct: 313 EGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMI 372

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   + ++A  L  EM R  + P   TY+            + A++L  QM + G+ 
Sbjct: 373 NGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGV- 431

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN ++      +++D    +    K  G  PD+ +Y++LI GLC+  K ++A +
Sbjct: 432 PPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARK 491

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F +++ KG       +  + +G     +      L  K+++ 
Sbjct: 492 VFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDN 534



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 132/274 (48%), Gaps = 18/274 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+ G+C +  ++ A+     M + GV P++ +Y++++NG C+           K   
Sbjct: 333 YNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKI----------KKFD 382

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM  + I PDV ++S ++   S++ +   +L  ++ M ++G+ P + TY+S++
Sbjct: 383 EAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSIL 442

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   +++ A  LL +    G  P   TY+   K          A K++  +   G  
Sbjct: 443 DALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYN 502

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++++Y I+I  F      +    + + ++ +G  PD  +Y ++I  L +K +   A +
Sbjct: 503 L-DVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEK 561

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
              EMI +GL    + F  LY     + + +TW 
Sbjct: 562 LLREMIARGL---PLNFYDLYL----TRLAQTWH 588



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 1/181 (0%)

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
            NF+          +YSS      S   ++DA  L   ++R    P A  +N        
Sbjct: 38  FNFIPYSSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVK 97

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
            K  +  + L ++M+  G+  PN+ + NILI  F  L  +     ++  +   G  PD  
Sbjct: 98  SKHYHTVLYLSQKMEFRGI-KPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTI 156

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           ++T L  GLC K + ++A  +  +++  G    ++++ TL  GL +    R    L +++
Sbjct: 157 TFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRV 216

Query: 282 D 282
           D
Sbjct: 217 D 217


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 138/270 (51%), Gaps = 11/270 (4%)

Query: 17  MAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIE 76
           +  +F  +MI  G+ P+V TYNV+++ +C+          E  + N+ ++F +MR  G+ 
Sbjct: 272 LVRKFFNDMIGAGIAPSVFTYNVMIDYLCK----------EGDLENSRRLFVQMREMGLS 321

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           PDV +++ ++  Y +    +      N MK+ G  P + TY+ ++ C C   ++  A E 
Sbjct: 322 PDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEY 381

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
             EM  NG+ P+  TY+     +       GA+KL+  M+  GL +PN  +Y  LI    
Sbjct: 382 FSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGL-LPNEFTYTSLIDANC 440

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
               +    ++ ND+  +G+  ++ +YT L+ GLC+  +  EA + F  M++ G+ P + 
Sbjct: 441 KAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQ 500

Query: 257 TFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            +  L  G I+++ +    ++ K++ E +I
Sbjct: 501 VYTALVHGYIKAERMEDAMKILKQMTECNI 530



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 139/287 (48%), Gaps = 11/287 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI   CK   +  A + L +M++ GV+ N+VTY  LL+G+C+   +           
Sbjct: 432 YTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMI---------- 481

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+VF  M   GI P+   ++ ++H Y +A + + ++  L  M E  I P +  Y S++
Sbjct: 482 EAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSII 541

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              CS  ++E+ + +L EM   G+  +          Y     ++ A+  +++M++ G+ 
Sbjct: 542 WGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGV- 600

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              + +Y +LI        +++  + +  +   GL P++  YT LI GLC+    + A +
Sbjct: 601 EATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKK 660

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
            F EM  +G+ P    F  L  G ++   L+    L  ++ E +I F
Sbjct: 661 LFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEF 707



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 135/270 (50%), Gaps = 11/270 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI  +CK  ++  A  +  EM   G++PNVVTY+ L++  C+          E  ++
Sbjct: 362 YNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCK----------EGMMQ 411

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F +MR  G+ P+  +++ ++    +A     +   LN M + G+   + TY++++
Sbjct: 412 GAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALL 471

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+ +AEE+   M+++G+ P+ + Y      Y   +    AMK+ +QM E  + 
Sbjct: 472 DGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNI- 530

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  Y  +I    +  +++  + I  ++K  G+  +    T +I    +  K  +A  
Sbjct: 531 KPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALN 590

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           +F EM + G+    VT+  L  GL ++ ++
Sbjct: 591 FFQEMQDVGVEATIVTYCVLIDGLCKAGIV 620



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 137/290 (47%), Gaps = 15/290 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G+ K+  ++       EM + G  P+++TYN L+N  C         +FEK  R
Sbjct: 327 YNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYC---------KFEKMPR 377

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A + F EM+  G++P+V ++S ++  + +    Q ++     M+  G+ P   TY+S++
Sbjct: 378 -AFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLI 436

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + +A +LL +M++ GV  +  TY               A +++R M +DG+ 
Sbjct: 437 DANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGIS 496

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN   Y  L+  ++   RM+   +I   +    + PDL  Y  +I G C ++K +E   
Sbjct: 497 -PNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKL 555

Query: 242 YFVEMIEKGLLPQKVTFETL----YRGLIQSDMLRTWRRLKKKLDEESIT 287
              EM  +G+    V   T+    ++    SD L  ++ ++    E +I 
Sbjct: 556 ILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIV 605



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 126/263 (47%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I   CK   ++ + R   +M E G+ P+VVTYN L++G  +  SL           
Sbjct: 292 YNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLE---------- 341

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F+EM+  G  PD+ +++ +++ Y +  +   + +  + MK  G+ P V TYS+++
Sbjct: 342 EVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLI 401

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G ++ A +L  +M R G+ P+  TY           +   A KL   M + G+ 
Sbjct: 402 DAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVK 461

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N+ +Y  L+       RM    E++  +   G+ P+   YT L+HG  + ++ ++A +
Sbjct: 462 L-NIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMK 520

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
              +M E  + P  + + ++  G
Sbjct: 521 ILKQMTECNIKPDLILYGSIIWG 543



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 110/223 (49%), Gaps = 2/223 (0%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +  A + F  MR     P   S + +LH  S++   QL     N M   GI P+V TY+ 
Sbjct: 235 LEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNV 294

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC  G +E++  L  +M   G+ P   TYN     Y           L+ +MK+ G
Sbjct: 295 MIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVG 354

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            CVP++ +YN LI  +    +M    E ++++K +GL P++ +Y+ LI   C++   + A
Sbjct: 355 -CVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGA 413

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQS-DMLRTWRRLKKKL 281
            + FV+M   GLLP + T+ +L     ++ ++   W+ L   L
Sbjct: 414 IKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDML 456



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 135/282 (47%), Gaps = 11/282 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+L++G+ K  R++ A + L +M E  ++P+++ Y  ++ G C           ++ +
Sbjct: 501 VYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCS----------QRKL 550

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              + + +EM+ RGI  +    + ++  Y +A +   +L+    M++ G+  T+ TY  +
Sbjct: 551 EETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVL 610

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G +E A +    M+  G+ P+   Y               A KL+ +M+  G+
Sbjct: 611 IDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGM 670

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ ++  LI   +    +     + + +    +  DL  YT L+ G  +  +  +A 
Sbjct: 671 -TPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQAR 729

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           ++F EMIEKG+LP++V    L R   +   L     LK +++
Sbjct: 730 KFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEME 771



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 91/179 (50%), Gaps = 10/179 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G CK   +++A  +   M+  G++PNV  Y  L++G+C+             I 
Sbjct: 607 YCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKN----------NCIE 656

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A+K+FDEM+ RG+ PD+T+F+ ++    +    Q +L  ++ M E  I   +  Y+S+V
Sbjct: 657 SAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLV 716

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
                CG +  A +   EM+  G+ P      C  +EY  R   + A++L  +M+  GL
Sbjct: 717 SGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMGL 775



 Score = 37.4 bits (85), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 5/121 (4%)

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +CV     +++L  +F+ L  ++   E ++ ++     P   S   L+H L +    +  
Sbjct: 214 ICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLV 273

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE-----ESITFGSEFQN 294
            ++F +MI  G+ P   T+  +   L +   L   RRL  ++ E     + +T+ S    
Sbjct: 274 RKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDG 333

Query: 295 Y 295
           Y
Sbjct: 334 Y 334


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I G+    ++D       EMI+RG+ P+VVTY  +++G+C+      ++ F++   
Sbjct: 202 YSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCK------AQLFDR--- 252

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE VF +M   G +P+  +++ ++H Y    + +  +  L  M  +G+ P   TY S++
Sbjct: 253 -AEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLL 311

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A      M+R G+ P   TY      Y  +   +        M E+GL 
Sbjct: 312 NYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLS 371

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ H +NI    +     +D   +I+N ++  GL P++ +Y  LI  LC+  +  +A  
Sbjct: 372 -PDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEV 430

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
            F +MI +G+ P  V F +L  GL   D       L  ++ ++ I   + F N
Sbjct: 431 KFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFN 483



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 134/288 (46%), Gaps = 11/288 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+   CK  R   A  F   MI +G++P V TY +L++G   + +L     F     
Sbjct: 307 YGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSF----- 361

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 D M   G+ PD   F+I    Y++      ++D  N M++ G+ P V  Y +++
Sbjct: 362 -----LDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALI 416

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR++DAE    +M+  GV P+   +N              A +L  +M + G+C
Sbjct: 417 DALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGIC 476

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN   +N LI     + R+   R + + ++  G+ PD  SYT LI G C   +  EA +
Sbjct: 477 -PNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEK 535

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
            F  M+  GL P +VT+ TL  G   +  +     L +++  + +T G
Sbjct: 536 VFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPG 583



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 141/295 (47%), Gaps = 13/295 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ SL+YG C +++ + AE  + EM+++G+ PN V +N L+  +C    +    R     
Sbjct: 446 VFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRR----- 500

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                + D M   G+ PD  S++ ++  Y    +   +    + M   G+ PT  TY+++
Sbjct: 501 -----LIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTL 555

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   CS  RI+DA  L  EM+R GV P   TYN         K  + A +LY  M   G 
Sbjct: 556 LHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGT 615

Query: 181 -CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C  ++++YNI++      N +D   +++  +   GL  ++ ++T++I  L +  + ++A
Sbjct: 616 KC--DIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDA 673

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
              F  +   GL+P  VT+  +   LI+   L  +  L   +++      S+  N
Sbjct: 674 MDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLN 728



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 126/284 (44%), Gaps = 9/284 (3%)

Query: 5   LIYGWCKINRIDMA-ERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           L+ G C   R+  A +  L  M E G  P+ V+Y +LL G+C        +R E+ +   
Sbjct: 131 LLKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNE------KRAEEALELL 184

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             + D+   R   P+V S+SIV++ +    Q     +    M ++GI P V TY++V+  
Sbjct: 185 HMMADD-HGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDG 243

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC     + AE +  +M+ NG  P+  TYNC    Y         +++  +M   GL  P
Sbjct: 244 LCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGL-KP 302

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           + ++Y  L+       R    R  ++ +   G+ P + +Y +LIHG   K    E   + 
Sbjct: 303 DCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFL 362

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             M+E GL P    F   +    +  M+     +  K+ +  ++
Sbjct: 363 DLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLS 406



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 137/304 (45%), Gaps = 13/304 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI  +C++  ++      G +++ G   + +  N LL G+C        +R  + + 
Sbjct: 93  YSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCH------GKRVGEAM- 145

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE---KGICPTVATYS 118
             + +   M   G  PD  S++I+L       + + +L+ L+ M +   +   P V +YS
Sbjct: 146 --DVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYS 203

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            V+    + G+++    L  EM+  G+ P   TY          +  + A  +++QM ++
Sbjct: 204 IVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDN 263

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G   PN ++YN LI  ++++ +   V ++  ++   GL PD  +Y  L++ LC+  + +E
Sbjct: 264 GF-KPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCRE 322

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
           A  +F  MI KG+ P+  T+  L  G      L         + E  ++      N  F 
Sbjct: 323 ARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFS 382

Query: 299 PYRR 302
            Y +
Sbjct: 383 AYAK 386



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 121/278 (43%), Gaps = 18/278 (6%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGV----CRRASLHPSERFEKTIRNAEKVFDEM 70
           +D A +   E++      +V  +N LL  V    C  AS      F + +R         
Sbjct: 30  LDDALKLFDELLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSD----- 84

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
               + P++ ++SI++  + R    +        + + G        + ++K LC   R+
Sbjct: 85  ---KVAPNLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRV 141

Query: 131 EDAEE-LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG--LCVPNMHS 187
            +A + LL  M   G  P   +Y    K     K A  A++L   M +D    C PN+ S
Sbjct: 142 GEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVS 201

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           Y+I+I  F    ++D    ++ ++   G+ PD+ +YT +I GLC+ Q +  A   F +MI
Sbjct: 202 YSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMI 261

Query: 248 EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           + G  P   T+  L  G +    +  W+ + + L+E S
Sbjct: 262 DNGFKPNNYTYNCLIHGYLS---IGKWKEVVQMLEEMS 296



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 26/221 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y +L++G+C  +RID A     EM+ +GV P VVTYN +L+G+ +      ++       
Sbjct: 552 YNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMI 611

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  +  A K+F  +  +G++ ++ +F+I++    +  + +
Sbjct: 612 NSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKE 671

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++D    +   G+ P V TY  V + L   G +E+ + L   M +NG  P+++  N   
Sbjct: 672 DAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALV 731

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
           +    R D + A     ++ E    V    + ++L+ +F +
Sbjct: 732 RRLLHRGDISRAGAYLSKLDERNFSV-EASTTSLLMSIFTS 771


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 151/322 (46%), Gaps = 40/322 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  LI G+CK   ID A + L  M    V P+VVTYN +L  +C    L  +        
Sbjct: 130 YNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL 186

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  +  A K+ DEMR +G +PDV +++++++   +  +  
Sbjct: 187 QKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 246

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++  LN M   G  P V T++ +++ +CS GR  DAE+LL +M+R G  PS  T+N   
Sbjct: 247 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILI 306

Query: 157 KEYRGRKDANG-AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
             +  R+   G A+ +  +M   G C PN  SYN L+  F    +MD   E  + +   G
Sbjct: 307 -NFLCRQGLLGRAIDILEKMPMHG-CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG 364

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
             PD+ +Y  L+  LC+  K   A +   ++  KG  P  +T+ T+  GL  S + +T R
Sbjct: 365 CYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGL--SKVGKTER 422

Query: 276 RLK-------KKLDEESITFGS 290
            +K       K L  + IT+ S
Sbjct: 423 AIKLLDEMRRKGLKPDIITYSS 444



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 145/298 (48%), Gaps = 22/298 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI   CK + +  A + L EM  +G +P+VVTYNVL+NG+C+   L  + +F     
Sbjct: 197 YTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKF----- 251

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 + M   G +P+V + +I+L       +   +   L+ M  KG  P+V T++ ++
Sbjct: 252 -----LNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILI 306

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +  A ++L +M  +G  P++ +YN     +   K  + A++    M   G C
Sbjct: 307 NFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG-C 365

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN L+       ++D+  EI N +   G  P L +Y  +I GL +  K + A +
Sbjct: 366 YPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIK 425

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
              EM  KGL P  +T+ +L  GL +          + K+D E+I F  + +    +P
Sbjct: 426 LLDEMRRKGLKPDIITYSSLVSGLSR----------EGKVD-EAIKFFHDLEGLGIRP 472



 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 122/252 (48%), Gaps = 14/252 (5%)

Query: 20  RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDV 79
           +FL  M+ RG  P+++    L+ G CR           KT + A  V + +   G  PDV
Sbjct: 78  KFLESMVYRGDIPDIIPCTSLIRGFCR---------IGKT-KKATWVMEILEQSGAVPDV 127

Query: 80  TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
            ++++++  Y ++ +   +L  L+ M    + P V TY+++++ LC  G+++ A E+L  
Sbjct: 128 ITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVLDR 184

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
            ++    P   TY    +          AMKL  +M+  G   P++ +YN+LI       
Sbjct: 185 QLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKG-SKPDVVTYNVLINGICKEG 243

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           R+D   +  N++   G  P++ ++ +++  +C   +W +A +   +M+ KG  P  VTF 
Sbjct: 244 RLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFN 303

Query: 260 TLYRGLIQSDML 271
            L   L +  +L
Sbjct: 304 ILINFLCRQGLL 315



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 129/276 (46%), Gaps = 28/276 (10%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS----ERF---- 56
           ++   C   R   AE+ L +M+ +G  P+VVT+N+L+N +CR+  L  +    E+     
Sbjct: 270 ILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG 329

Query: 57  -----------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
                            EK +  A +  D M  RG  PD+ +++ +L    +  +  +++
Sbjct: 330 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 389

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           + LN +  KG  P + TY++V+  L   G+ E A +LL EM R G+ P   TY+      
Sbjct: 390 EILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 449

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYN-ILIGMFMALNRMDMVREIWNDVKGSGLGP 218
                 + A+K +  ++  G+  PN  +YN I++G+  +  + D   +    +      P
Sbjct: 450 SREGKVDEAIKFFHDLEGLGI-RPNAITYNSIMLGLCKS-RQTDRAIDFLAYMISKRCKP 507

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
              +YT+LI G+  +   KEA     E+  +GL+ +
Sbjct: 508 TEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKK 543


>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
          Length = 637

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 145/281 (51%), Gaps = 12/281 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+  WC    +  A R   EM+E+G++P+VV +N ++ G+ R    H          
Sbjct: 332 YTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRQH---------- 381

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F+ M+ +G  P+V ++++++  + +  +  ++++    M+E    P VATY+ ++
Sbjct: 382 EAVKMFELMKAKGPPPNVWTYTMLICNHCKRGKMDMAMECFEEMQEARCQPDVATYTCLL 441

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               +  R++    +L EM + G  P A TYN   K    RK  + A ++Y++M + GL 
Sbjct: 442 VGYGNAKRMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGL- 500

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            P +H+YN+++   F+      M   +W ++   G+ PD++SYT+ I G     + +EA 
Sbjct: 501 DPTIHTYNMMMKSYFLGDRNYAMGCAVWEEMHRRGICPDVNSYTVFISGHIRHGRPEEAY 560

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +Y  EMI KG+   ++        L ++  L     L +K+
Sbjct: 561 KYIEEMINKGMKAPQIDCNKFAADLSKAGKLDMLYELAQKV 601



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 112/244 (45%), Gaps = 13/244 (5%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR---AHQPQLSLDKLNFMKEKGICPTVAT 116
           I+NA  VF+ MR  G +  V SF+ +L   +      + +   DK+         P + +
Sbjct: 276 IKNAVGVFELMRKNGFDDGVESFNCLLVALANEGLGREARQVFDKM----LGQYSPDLRS 331

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y++++   C+   + +A  +  EM+  G+ P    +N   +     +  + A+K++  MK
Sbjct: 332 YTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRQHEAVKMFELMK 391

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G   PN+ +Y +LI       +MDM  E + +++ +   PD+ +YT L+ G    ++ 
Sbjct: 392 AKGP-PPNVWTYTMLICNHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRM 450

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGL----IQSDMLRTWRRL-KKKLDEESITFGSE 291
                   EM +KG  P   T+  L + L    +  D  R ++++ KK LD    T+   
Sbjct: 451 DRVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTYNMM 510

Query: 292 FQNY 295
            ++Y
Sbjct: 511 MKSY 514



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 100/242 (41%), Gaps = 5/242 (2%)

Query: 22  LGEMIERGVEPNV-VTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80
           + ++I  G + N+    + L   +C    L    RF+   R + + F      G     T
Sbjct: 167 IADVIAAGADANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATASGGFTHTT 226

Query: 81  -SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
            ++  +L +  +  Q +  +  L  M + G   ++  +   +K   + G I++A  +   
Sbjct: 227 ITYCKMLLILGKTRQFESMVALLQEMGKAGTL-SMDAFKVAIKSFAAAGEIKNAVGVFEL 285

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
           M +NG     E++NC             A +++ +M   G   P++ SY  L+  +    
Sbjct: 286 MRKNGFDDGVESFNCLLVALANEGLGREARQVFDKML--GQYSPDLRSYTALMLAWCNAR 343

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
            +     +WN++   G+ PD+  +  +I GL   Q+  EA + F  M  KG  P   T+ 
Sbjct: 344 NLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRQHEAVKMFELMKAKGPPPNVWTYT 403

Query: 260 TL 261
            L
Sbjct: 404 ML 405


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 137/267 (51%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI+G    N+   A   +  M+ +G +P++VTY V++NG+C+R              
Sbjct: 189 FNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL--------- 239

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + ++M    +EP V  ++ ++    +      +L+    M+ KGI P V TYSS++
Sbjct: 240 -AFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI 298

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLC+ GR  DA  LL +M+   + P   T++     +        A KLY +M +  + 
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI- 357

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ LI  F   +R+D  ++++  +      PD+ +Y  LI G C+ ++ +E  +
Sbjct: 358 DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGME 417

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F EM ++GL+   VT+  L +GL Q+
Sbjct: 418 VFREMSQRGLVGNTVTYNILIQGLFQA 444



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 140/283 (49%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI   C   R   A R L +MIER + P+V T++ L++   +          E  + 
Sbjct: 294 YSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK----------EGKLV 343

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK++DEM  R I+P + ++S +++ +    +   +     FM  K   P V TY++++
Sbjct: 344 EAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLI 403

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R+E+  E+  EM + G+  +  TYN   +      D + A +++++M  DG+ 
Sbjct: 404 KGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV- 462

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN L+       +++    ++  ++ S + P + +Y ++I G+C+  K ++   
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KG+ P  V + T+  G  +         L K++ E+
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKED 565



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 140/279 (50%), Gaps = 17/279 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI  +C+ +++ +A   LG+M++ G EPN+VT + LLNG C            K I 
Sbjct: 119 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCH----------SKRIS 168

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLH---VYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A  + D+M V G +P+  +F+ ++H   ++++A +    +D+   M  KG  P + TY 
Sbjct: 169 EAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDR---MVAKGCQPDLVTYG 225

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            VV  LC  G  + A  LL +M +  + P    YN         K  + A+ L+++M+  
Sbjct: 226 VVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK 285

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  PN+ +Y+ LI       R      + +D+    + PD+ +++ LI    ++ K  E
Sbjct: 286 GI-RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A + + EM+++ + P  VT+ +L  G    D L   +++
Sbjct: 345 AEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 383



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 132/282 (46%), Gaps = 16/282 (5%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           ++D A    GEM++    P+++ ++ LL+ + +        +F+  I   E    +M+  
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKM------NKFDVVISLGE----QMQNL 110

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           GI  +  ++SI+++ + R  Q  L+L  L  M + G  P + T SS++   C   RI +A
Sbjct: 111 GIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEA 170

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             L+ +M   G  P+  T+N           A+ AM L  +M   G C P++ +Y +++ 
Sbjct: 171 VALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG-CQPDLVTYGVVVN 229

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
                   D+   + N ++   L P +  Y  +I GLC+ +   +A   F EM  KG+ P
Sbjct: 230 GLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRP 289

Query: 254 QKVTFETLYRGLIQ----SDMLRTWRRL-KKKLDEESITFGS 290
             VT+ +L   L      SD  R    + ++K++ +  TF +
Sbjct: 290 NVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSA 331



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 111/229 (48%), Gaps = 11/229 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK  R++       EM +RG+  N VTYN+L+ G+ +               
Sbjct: 399 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM--------- 449

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++F EM   G+ P++ +++ +L    +  + + ++    +++   + PT+ TY+ ++
Sbjct: 450 -AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMI 508

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + +C  G++ED  +L   +   GV P    YN     +  +     A  L+++MKEDG  
Sbjct: 509 EGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDG-T 567

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           +PN   YN LI   +     +   E+  +++  G   D  +  ++ + L
Sbjct: 568 LPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 616



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 103/230 (44%), Gaps = 1/230 (0%)

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           E  + +A  +F EM      P +  FS +L   ++ ++  + +     M+  GI     T
Sbjct: 59  ELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYT 118

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           YS ++ C C   ++  A  +LG+M++ G  P+  T +     Y   K  + A+ L  QM 
Sbjct: 119 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMF 178

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G   PN  ++N LI      N+      + + +   G  PDL +Y ++++GLC++   
Sbjct: 179 VTGY-QPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             A     +M +  L P  + + T+  GL +   +     L K+++ + I
Sbjct: 238 DLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGI 287


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 140/267 (52%), Gaps = 15/267 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CKI +++ AE  L +M  RGV  N + +N +++G CR+            + 
Sbjct: 275 YGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQG----------MVD 324

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA KV   M   GIE DV +++ +     R ++   +   L+ M EKG+ P   TY++++
Sbjct: 325 NALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLI 384

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + +A  L  EM   G  PS  TYN     Y  +     A +  ++M++ GL 
Sbjct: 385 SIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGL- 443

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++++Y  L+       ++D+  +++ ++K  G  P++ +YT LI GL ++ + +EA Q
Sbjct: 444 VPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQ 503

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            + +M++ GL P     ++LY  L+ S
Sbjct: 504 LYDDMLKAGLTPD----DSLYSALVGS 526



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 140/308 (45%), Gaps = 26/308 (8%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRAS--------------- 49
           ++ G+CK  R+D A   L EM   GV  N + YN LL+   RR                 
Sbjct: 138 VVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIMENGG 197

Query: 50  ----------LHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
                     L  S      I   E V DEM+ + +  DV  ++ V++ Y RA   + + 
Sbjct: 198 IEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRAS 257

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           +  +     GI P   TY  ++   C  G++E AE LL +M   GV  +   +N     Y
Sbjct: 258 EVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGY 317

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
             +   + A+K+   M++ G+ + ++++YN L      +NRM   + + + +   G+ P+
Sbjct: 318 CRQGMVDNALKVKAAMEKMGIEL-DVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPN 376

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
             +YT LI   C++    EA + F EM  KG +P  VT+  +  G I+   +R   R +K
Sbjct: 377 YVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRK 436

Query: 280 KLDEESIT 287
           +++++ + 
Sbjct: 437 EMEKKGLV 444



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 4/173 (2%)

Query: 96  QLSLDKLNFMKEKGICPTVAT---YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
           QL+       +  G CP   +    S VV   C  GR++DA  LL EM R+GV  +A  Y
Sbjct: 111 QLADAAAILTRALGSCPGSVSPLAASVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCY 170

Query: 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
           N     Y  RKD     +L   M E+G     + +Y IL+        +  V  + +++K
Sbjct: 171 NSLLDCYVRRKDDARVQELLEIM-ENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMK 229

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
              +  D+  YT +I+  C     + A + F E +  G+ P + T+  L  G 
Sbjct: 230 AKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGF 282



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 25/148 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI   CK   +  A R   EM  +G  P+VVTYNV+++G  ++ S+  +ERF K + 
Sbjct: 380 YTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEME 439

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     A K+F+EM+ RG EP+V +++ ++   ++  + +
Sbjct: 440 KKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSE 499

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +    + M + G+ P  + YS++V  L
Sbjct: 500 EAFQLYDDMLKAGLTPDDSLYSALVGSL 527


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 136/263 (51%), Gaps = 11/263 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+  +C+ ++  +A  FLG+M++ G EP++VT+  L+NG C         R E+    A 
Sbjct: 113 LMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCL------GNRMEE----AM 162

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            + ++M   GI+PDV  ++ ++    +      +L   + M+  GI P V  Y+S+V  L
Sbjct: 163 SMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGL 222

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C+ GR  DA+ LL  M +  + P   T+N     +        A +LY +M    +  PN
Sbjct: 223 CNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSI-APN 281

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y  LI  F     +D  R+++  ++  G  PD+ +YT LI+G C+ +K  +A + F 
Sbjct: 282 IFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFY 341

Query: 245 EMIEKGLLPQKVTFETLYRGLIQ 267
           EM +KGL    +T+ TL +G  Q
Sbjct: 342 EMSQKGLTGNTITYTTLIQGFGQ 364



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 133/268 (49%), Gaps = 14/268 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT++I   CK   ++ A     +M   G+ P+VV Y  L+NG+C       S R+    
Sbjct: 179 MYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCN------SGRW---- 228

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R+A+ +   M  R I+PDV +F+ ++  + +  +   + +  N M    I P + TY+S+
Sbjct: 229 RDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSL 288

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G +++A ++   M   G  P    Y      +   K  + AMK++ +M + GL
Sbjct: 289 INGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGL 348

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              N  +Y  LI  F  + + ++ +E+++ +   G+ P++ +Y +L+H LC   K K+A 
Sbjct: 349 -TGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKAL 407

Query: 241 QYFVEMIEK---GLLPQKVTFETLYRGL 265
             F +M ++   G+ P   T+  L  GL
Sbjct: 408 MIFEDMQKREMDGVAPNIWTYNVLLHGL 435



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 138/289 (47%), Gaps = 14/289 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI  + K  +   AE    EMI   + PN+ TY  L+NG C           E  + 
Sbjct: 250 FNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFC----------MEGCVD 299

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F  M  +G  PDV +++ +++ + +  +   ++     M +KG+     TY++++
Sbjct: 300 EARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLI 359

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---D 178
           +     G+   A+E+   MV  GV P+  TYN              A+ ++  M++   D
Sbjct: 360 QGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMD 419

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  PN+ +YN+L+       +++    ++ D++   +   + +YT++I G+C+  K K 
Sbjct: 420 GV-APNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKN 478

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           A   F  +  KG+ P  VT+ T+  GL +  +      L +K+ E+ ++
Sbjct: 479 AVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 139/317 (43%), Gaps = 49/317 (15%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A      M+E    P+++ +  LLN + +       ++F+  I     + D +++ G+  
Sbjct: 56  ALDLFTHMVESRPLPSIIDFTKLLNVIAKM------KKFDVVI----NLCDHLQIMGVSH 105

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           D+ + +++++ + ++ QP L+   L  M + G  P + T++S++   C   R+E+A  ++
Sbjct: 106 DLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMV 165

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE--------------DGLC-- 181
            +MV  G+ P    Y             N A+ L+ QM+               +GLC  
Sbjct: 166 NQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNS 225

Query: 182 ------------------VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSY 223
                              P++ ++N LI  F+   +     E++N++    + P++ +Y
Sbjct: 226 GRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTY 285

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLKK 279
           T LI+G C +    EA Q F  M  KG  P  V + +L  G  +     D ++ +  + +
Sbjct: 286 TSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQ 345

Query: 280 K-LDEESITFGSEFQNY 295
           K L   +IT+ +  Q +
Sbjct: 346 KGLTGNTITYTTLIQGF 362


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 149/321 (46%), Gaps = 38/321 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  LI G+CK   ID A + L  M    V P+VVTYN +L  +C    L  +        
Sbjct: 180 YNVLIGGYCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQM 236

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +  +  A K+ DEMR +G +PDV +++++++   +  +  
Sbjct: 237 QRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLD 296

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++  LN M   G  P V T++ +++ +CS GR  DAE LL +M+R G  PS  T+N   
Sbjct: 297 EAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILI 356

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                ++    A+ +  +M + G C+PN  SYN L+  F    +MD   E    +   G 
Sbjct: 357 NFLCRKRLLGRAIDVLEKMPKHG-CMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGC 415

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ-------SD 269
            PD+ +Y  L+  LC+  K   A +   ++  KG  P  +T+ T+  GL +       ++
Sbjct: 416 YPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAE 475

Query: 270 MLRTWRRLKKKLDEESITFGS 290
           +L   RR  K L  + IT+ +
Sbjct: 476 LLEEMRR--KGLKPDIITYST 494



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 131/261 (50%), Gaps = 11/261 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++   C   R   AER L +M+ +G  P+VVT+N+L+N +CR+          + +  A 
Sbjct: 320 ILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRK----------RLLGRAI 369

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            V ++M   G  P+  S++ +LH + +  +   +++ L  M  +G  P + TY++++  L
Sbjct: 370 DVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTAL 429

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G+ + A E+L ++   G  P   TYN              A +L  +M+  GL  P+
Sbjct: 430 CKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGL-KPD 488

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y+ L+       ++D   +I++D++G  + P   +Y  ++ GLC+ Q+   A  +  
Sbjct: 489 IITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLA 548

Query: 245 EMIEKGLLPQKVTFETLYRGL 265
            M+EKG  P K T+  L  G+
Sbjct: 549 YMVEKGCKPTKATYTILIEGI 569



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 131/264 (49%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI   C  + +  A + L EM ++G +P+VVTYNVL+NG+C+          E  + 
Sbjct: 247 YTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICK----------EGRLD 296

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K  + M + G +P+V + +I+L       +   +   L  M  KG  P+V T++ ++
Sbjct: 297 EAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILI 356

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    +  A ++L +M ++G  P++ +YN     +   K  + A++    M   G C
Sbjct: 357 NFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRG-C 415

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN L+       + D   EI N +   G  P L +Y  +I GL +  K + A +
Sbjct: 416 YPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAE 475

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
              EM  KGL P  +T+ TL RGL
Sbjct: 476 LLEEMRRKGLKPDIITYSTLLRGL 499



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 125/253 (49%), Gaps = 16/253 (6%)

Query: 20  RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDV 79
           +FL  MI +G  P+V+    L+ G CR      + R  + + N+          G  PDV
Sbjct: 128 KFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENS----------GAVPDV 177

Query: 80  TSFSIVLHVYSRAHQPQLSLDK-LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLG 138
            ++++++  Y ++ +    +DK L  ++   + P V TY+++++ LC  G++++A E+L 
Sbjct: 178 ITYNVLIGGYCKSGE----IDKALQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLD 233

Query: 139 EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL 198
             ++    P   TY    +          AMKL  +M++ G C P++ +YN+LI      
Sbjct: 234 RQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKG-CKPDVVTYNVLINGICKE 292

Query: 199 NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
            R+D   +  N++   G  P++ ++ +++  +C   +W +A +   +M+ KG  P  VTF
Sbjct: 293 GRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTF 352

Query: 259 ETLYRGLIQSDML 271
             L   L +  +L
Sbjct: 353 NILINFLCRKRLL 365


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 133/257 (51%), Gaps = 11/257 (4%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           +C+ ++  +A  FLG++++ G EP++ T+  L+NG C              I  A  + +
Sbjct: 116 FCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFC----------LGNRIEEAMSMVN 165

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
           +M   GI+PDV  ++ ++    +      +L   N M+  GI P V  Y+S+V  LC+ G
Sbjct: 166 QMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSG 225

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           R  DA+ LL  M++  + P   T+N     +        A +LY +M +  +  PN+ +Y
Sbjct: 226 RWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSI-APNIFTY 284

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
             LI       R+D  R+++  ++  G  PD+ +YT LI+G C+ +K ++A + F EM +
Sbjct: 285 TSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQ 344

Query: 249 KGLLPQKVTFETLYRGL 265
           KGL    +T+ TL +G 
Sbjct: 345 KGLTGNTITYTTLIQGF 361



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 140/292 (47%), Gaps = 29/292 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------------- 48
           +TSLI G+C  NRI+ A   + +M+E G++P+VV Y  +++ +C+               
Sbjct: 144 FTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQME 203

Query: 49  --SLHPSERFEKTI----------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
              + P      ++          R+A+ +   M  R I+PDV +F+ ++  + +  +  
Sbjct: 204 NYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLL 263

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + +  N M +  I P + TY+S++  LC  GR+++A ++   M   G  P    Y    
Sbjct: 264 DAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLI 323

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +   K    AMK++ +M + GL   N  +Y  LI  F  + + ++ +E++  +   G+
Sbjct: 324 NGFCKCKKVEDAMKIFYEMSQKGL-TGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGV 382

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK---GLLPQKVTFETLYRGL 265
            P++ +Y +L+H LC   K  +A   F +M ++   G+ P   T+  L  GL
Sbjct: 383 PPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGL 434



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 146/289 (50%), Gaps = 14/289 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI  + K  ++  A+    EMI+  + PN+ TY  L+NG+C           E  + 
Sbjct: 249 FNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLC----------MEGRLD 298

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F  M  +G  PDV +++ +++ + +  + + ++     M +KG+     TY++++
Sbjct: 299 EARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLI 358

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---D 178
           +     G+   A+E+ G MV  GV P+  TYN            N A+ ++  M++   D
Sbjct: 359 QGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREID 418

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  PN+ +YN+L+       +++    ++ D++   +   + +YT++I G+C+  K K+
Sbjct: 419 GV-PPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKD 477

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           A   F  +  KG+ P  VT+ T+  GL +  ++     L +K+ E+ ++
Sbjct: 478 ALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKEDGVS 526



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 101/225 (44%), Gaps = 1/225 (0%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  +F  M      P +  F+ +L+V ++  +  + ++    ++  G+   + T + ++ 
Sbjct: 55  ALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMN 114

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
           C C   +   A   LG++++ G  P   T+      +        AM +  QM E G+  
Sbjct: 115 CFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGI-K 173

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++  Y  +I        +D    ++N ++  G+ PD+  YT L++GLC   +W++A   
Sbjct: 174 PDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLL 233

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              M+++ + P  +TF  L    ++   L   + L  ++ + SI 
Sbjct: 234 LRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIA 278


>gi|449435418|ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Cucumis sativus]
 gi|449494962|ref|XP_004159696.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Cucumis sativus]
          Length = 514

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 146/284 (51%), Gaps = 16/284 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ SL+ G+CK  RI  A      M + G EP+++TYN+LLN  C    L   E   K++
Sbjct: 221 IFNSLMSGFCKSGRISKALAIKSFMSKHGCEPDLITYNILLNFFCDGLML---ELAGKSM 277

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           +  E++       G+EPDV S++ +L    +A++   +   +N M EKG+C TV +Y++V
Sbjct: 278 KKMERI-------GMEPDVYSYNQLLKGLCKANRLDKAYKLMNTMWEKGLCDTV-SYNTV 329

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC       A  L  EM +  V P   T+    K +      + A  L + M +  L
Sbjct: 330 IGALCKSFATRKAYRLFEEMGQKDVAPDVGTFATLIKAFLIEGSPHIAKGLLQTMTQTVL 389

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +P++  Y  ++  F    +++M + ++ D+   G+ PD+ SY  LI+GLC+  K  EA 
Sbjct: 390 -IPDLIFYTTVVDYFCKTRKIEMAQGVFRDMIEIGISPDVVSYNALINGLCKASKVSEAM 448

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDML----RTWRRLKKK 280
             + EM  +G  P +VTF+ +  GL++   L    + W ++ +K
Sbjct: 449 LLYEEMQIRGCYPDEVTFKLIIGGLLRKKELSLACQVWDQMMEK 492



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 139/291 (47%), Gaps = 22/291 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+  I   C+I    +  R L +M + G  P++  +N+ LN + R          E  + 
Sbjct: 82  YSRFISALCEIKNFGLIGRLLEDMKQLGYLPDIWAFNIYLNLLFR----------ENLLE 131

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K FDEM  +G EPDV +++I++    +A Q   +++    M  KG+ P +   +++V
Sbjct: 132 LALKFFDEMVAKGREPDVVTYTIIVDRLCKAKQYDKAVEFWRCMVNKGLSPDMKACTALV 191

Query: 122 KCLCSCGRIEDAEELL-----GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
             LC  G+++ A EL      GEM  N +      +N     +      + A+ +   M 
Sbjct: 192 VGLCDGGKVDLAYELTVGEMKGEMKFNNL-----IFNSLMSGFCKSGRISKALAIKSFMS 246

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           + G C P++ +YNIL+  F     +++  +    ++  G+ PD+ SY  L+ GLC+  + 
Sbjct: 247 KHG-CEPDLITYNILLNFFCDGLMLELAGKSMKKMERIGMEPDVYSYNQLLKGLCKANRL 305

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            +A +    M EKGL    V++ T+   L +S   R   RL +++ ++ + 
Sbjct: 306 DKAYKLMNTMWEKGLC-DTVSYNTVIGALCKSFATRKAYRLFEEMGQKDVA 355



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 77/156 (49%), Gaps = 2/156 (1%)

Query: 111 CPTVA-TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAM 169
           CP  +  Y+  +  L S  R + AE     M+  G   +  TY+ F       K+     
Sbjct: 40  CPVTSRDYNRFIGVLISRSRFDLAESYYSRMIPQGFSLTPFTYSRFISALCEIKNFGLIG 99

Query: 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
           +L   MK+ G  +P++ ++NI + +    N +++  + ++++   G  PD+ +YT+++  
Sbjct: 100 RLLEDMKQLGY-LPDIWAFNIYLNLLFRENLLELALKFFDEMVAKGREPDVVTYTIIVDR 158

Query: 230 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           LC+ +++ +A +++  M+ KGL P       L  GL
Sbjct: 159 LCKAKQYDKAVEFWRCMVNKGLSPDMKACTALVVGL 194



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 2/144 (1%)

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           +S+ KC+   G I++A  +  EM ++    ++  YN F      R   + A   Y +M  
Sbjct: 14  ASITKCV-KVGLIDEAIRIFDEMTQSDCPVTSRDYNRFIGVLISRSRFDLAESYYSRMIP 72

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G  +    +Y+  I     +    ++  +  D+K  G  PD+ ++ + ++ L  +   +
Sbjct: 73  QGFSLTP-FTYSRFISALCEIKNFGLIGRLLEDMKQLGYLPDIWAFNIYLNLLFRENLLE 131

Query: 238 EACQYFVEMIEKGLLPQKVTFETL 261
            A ++F EM+ KG  P  VT+  +
Sbjct: 132 LALKFFDEMVAKGREPDVVTYTII 155


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 129/257 (50%), Gaps = 10/257 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G CK+  +  A   L   I +G  P++ T+N L++G C+R  +           
Sbjct: 401 YNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMD---------- 450

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA  + D M   G+ PDV +++ +L+   +A +P+  ++    + EKG  P + TY+ ++
Sbjct: 451 NAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILI 510

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC   ++ +A +LL E+   G+ P   ++      +    D + A +L+R+M++    
Sbjct: 511 ESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRI 570

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              + +YNI+I  F     MDM +++++++   G  PD  +Y ++I G C+         
Sbjct: 571 CHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYD 630

Query: 242 YFVEMIEKGLLPQKVTF 258
           + ++ IE G +P   TF
Sbjct: 631 FLLKEIEIGFVPSLTTF 647



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 139/283 (49%), Gaps = 8/283 (2%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L++  CK   +   E+ L ++++ GV PN+ T+N+ + G+CR+  L   E     + 
Sbjct: 219 FNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVL---EGANSKVV 275

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE    +M  +G+EPD  +++ +++ YS+  + Q +   L   K KG  P   TY S++
Sbjct: 276 EAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLI 335

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G I+ A  L  E +  G+ PS   YN   K    +     A++L   M ++G+ 
Sbjct: 336 IGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMS 395

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN++I     +  +     + N     G  PD+ ++  LI G C++ K   A  
Sbjct: 396 -PDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIG 454

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKKK 280
               M   G+ P  +T+ ++  GL ++    D++ T++ + +K
Sbjct: 455 ILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEK 497



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 139/283 (49%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++IYG+ K+ +I  A R L +   +G  P+  TY  L+ GVC+          +  I 
Sbjct: 296 YNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQ----------DGDID 345

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +F+E   +G++P +  ++ ++   S+      +L  +N M ++G+ P + TY+ V+
Sbjct: 346 HALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVI 405

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G + DA  LL   +  G  P   T+N     Y  R   + A+ +   M   G+ 
Sbjct: 406 NGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGV- 464

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN ++       + + V E +  +   G  P++ +Y +LI  LC+ +K  EA  
Sbjct: 465 TPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALD 524

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
              E+  +GL+P  V+F T+  G   +  L    +L ++++++
Sbjct: 525 LLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQ 567



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 140/329 (42%), Gaps = 53/329 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y S +  + +  ++  A      M     EP++ +YN ++N +      +         
Sbjct: 78  VYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFN--------- 128

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG----------- 109
             A KV+  M+  GI PDV +F+I +  + R  +P  +L  LN M  +G           
Sbjct: 129 -QAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTV 187

Query: 110 ------------------------ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
                                   I P +AT++ ++  LC  G +++ E+LL ++++NGV
Sbjct: 188 ISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGV 247

Query: 146 CPSAETYNCFFKEYRGRKDANGAM-------KLYRQMKEDGLCVPNMHSYNILIGMFMAL 198
           CP+  T+N F +    +    GA            +M   GL  P+  +YN +I  +  +
Sbjct: 248 CPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGL-EPDDFTYNTIIYGYSKV 306

Query: 199 NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
            ++     I  D K  G  PD  +Y  LI G+C+      A   F E + KGL P  V +
Sbjct: 307 GKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLY 366

Query: 259 ETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            TL +GL Q  ++    +L   + +E ++
Sbjct: 367 NTLIKGLSQQGLVLKALQLMNDMSKEGMS 395



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 120/271 (44%), Gaps = 18/271 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T  I  +C+  R   A R L  M  +G E N V Y  +++G             E    
Sbjct: 149 FTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYE----------ENYQV 198

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F++M   GI P + +F+ ++H+  +    Q     LN + + G+CP + T++  +
Sbjct: 199 EAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFI 258

Query: 122 KCLCSCGRIE-------DAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
           + LC  G +E       +AE  L +MV  G+ P   TYN     Y        A ++ + 
Sbjct: 259 QGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKD 318

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
            K  G  VP+  +Y  LI        +D    ++ +  G GL P +  Y  LI GL ++ 
Sbjct: 319 AKFKGF-VPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQG 377

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
              +A Q   +M ++G+ P   T+  +  GL
Sbjct: 378 LVLKALQLMNDMSKEGMSPDIWTYNLVINGL 408



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 26/174 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS----ERFE 57
           Y  LI   CK  ++  A   L E+  RG+ P+ V++  +++G C    L  +     R E
Sbjct: 506 YNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRME 565

Query: 58  KTIR----------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           +  R                       A+K+F EM  +G +PD  ++ +++  + +    
Sbjct: 566 QQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNV 625

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
               D L    E G  P++ T+  V+ CLC   R+ +A  ++  MVR GV P A
Sbjct: 626 NSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGVVPEA 679



 Score = 44.3 bits (103), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 71/165 (43%), Gaps = 2/165 (1%)

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE-TYNCFFKEYRGRKD 164
           KE G   T  TY  +++ L   G  +  E +L EM  N      E  Y    + Y  +  
Sbjct: 32  KEDGFKHTFLTYKRMIEKLGFHGEFDAMERVLMEMRLNVDNSLLEGVYVSAMRNYGRKGK 91

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
              A+ ++ +M     C P++ SYN ++ + +     +   +++  +K  G+ PD+ ++T
Sbjct: 92  VQEAVDVFERMDFYN-CEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFT 150

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           + I   C  ++   A +    M  +G     V + T+  G  + +
Sbjct: 151 IRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEEN 195


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 143/285 (50%), Gaps = 27/285 (9%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV----------------CRRASLHP 52
           +C  +RID A   L   ++ G+  NVVT+N LL G+                 R     P
Sbjct: 107 YCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEP 166

Query: 53  SERFEKTIRNA-------EKVFDEMRVR---GIEPDVTSFSIVLHVYSRAHQPQLSLDKL 102
           +E    T+ N        EK    +R+      +PDV ++SIV+    +      +++ L
Sbjct: 167 NEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLL 226

Query: 103 NFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR 162
           N MK+K I P + TY+S++  LC  G+ E  + LL EMV   + P+  T++         
Sbjct: 227 NEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKE 286

Query: 163 KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS 222
                A ++ R M E G+  P++ +Y+ ++  +    ++D  R ++N ++  G+ P++ S
Sbjct: 287 GKVEDADEVMRHMIEKGV-EPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFS 345

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           Y++LI+G C+K+   +A Q F E+ +KGL P  VT+ T+  GLI+
Sbjct: 346 YSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIE 390



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 145/292 (49%), Gaps = 17/292 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ LI G CK  +++ A+  +  MIE+GVEP+++TY+ +++G C R            + 
Sbjct: 276 FSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQ----------VD 325

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +VF+ +R +GI+P++ S+SI+++ Y +      ++     + +KG+ P   TYS+++
Sbjct: 326 RARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTIL 385

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM---KED 178
             L   GRI DA+++  EM+R G  P    ++     Y        AM L+ ++   +ED
Sbjct: 386 HGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNRED 445

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
                N+  Y ++I      +R+     I+  +   GL PD+ +Y ++I G C +  + E
Sbjct: 446 ----TNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDE 501

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
                 +M + G     +T+  + +G  +S+ +       K++     +F +
Sbjct: 502 VKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDA 553



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 147/293 (50%), Gaps = 17/293 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY +++ G  K    +     L  M +   +P+V TY+++++ +C+  +L          
Sbjct: 170 MYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDA-------- 221

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + +EM+ + I P++ +++ ++    +  Q +     L+ M    I P V T+S +
Sbjct: 222 --AINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSIL 279

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G++EDA+E++  M+  GV P   TY+     Y  R   + A +++  +++ G+
Sbjct: 280 IDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGI 339

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+ SY+ILI  +     +    +++ ++   GL PD  +Y+ ++HGL E  +  +A 
Sbjct: 340 -KPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAK 398

Query: 241 QYFVEMIEKGLLPQKVTFETLY-----RGLIQSDMLRTWRRLKKKLDEESITF 288
           + F EM+  G  P      TL       GL++  ML  + +L++  ++ +I+F
Sbjct: 399 KIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAML-LFSKLERNREDTNISF 450



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 156/334 (46%), Gaps = 51/334 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I   CK   +D A   L EM ++ + PN+ TYN L++G+C+        ++EK   
Sbjct: 206 YSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLG------QWEK--- 256

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             + +  EM    I P+V +FSI++    +  + + + + +  M EKG+ P + TYS+++
Sbjct: 257 -VKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIM 315

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+++ A  +   +   G+ P+  +Y+     Y  +K+   AM+L+ ++ + GL 
Sbjct: 316 DGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGL- 374

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD---------------------- 219
            P+  +Y+ ++   + + R+   ++I++++   G  PD                      
Sbjct: 375 KPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAML 434

Query: 220 -------------LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
                        +  YT++I+GLC+  + +EA   F ++   GL+P   T+  +  G  
Sbjct: 435 LFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFC 494

Query: 267 QSDMLRTWRRLKKKLDE-----ESITFGSEFQNY 295
           +  +    + + +K+++      +IT+    Q +
Sbjct: 495 REGLFDEVKGILRKMEDNGCPANNITYNVIMQGF 528



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 111/234 (47%), Gaps = 17/234 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G+CK   +  A +  GE+ ++G++P+ VTY+ +L+G+               I 
Sbjct: 346 YSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGR----------IG 395

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSR---AHQPQLSLDKLNFMKEKGICPTVATYS 118
           +A+K+FDEM   G  PD+   S +L  Y +     +  L   KL   +E      ++ Y+
Sbjct: 396 DAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNRED---TNISFYT 452

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            V+  LC   R+ +A  +  ++   G+ P   TYN     +      +    + R+M+++
Sbjct: 453 VVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDN 512

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
           G C  N  +YN+++  F   N++  +     ++ G G   D  +  +LI+ L E
Sbjct: 513 G-CPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLINVLKE 565



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 107/236 (45%), Gaps = 7/236 (2%)

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           +F EMR+ GI    +  +IV + Y   H+   +   L    + GI   V T+++++  L 
Sbjct: 84  LFREMRILGIPISDSILNIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLF 143

Query: 126 SCGRIEDAEELLGEMVRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           +  ++ DA  L  ++VR  +C P+   Y         R      + L R M E G   P+
Sbjct: 144 AENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIM-EQGNTKPD 202

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y+I+I        +D    + N++K   + P++ +Y  LI GLC+  +W++      
Sbjct: 203 VRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLS 262

Query: 245 EMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRR-LKKKLDEESITFGSEFQNY 295
           EM+   + P   TF  L  GL +     D     R  ++K ++ + IT+ +    Y
Sbjct: 263 EMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGY 318



 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 4/141 (2%)

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
           SC  ++DA  L   MVR    PS   ++  FK     K  +  + L+R+M+  G+ + + 
Sbjct: 41  SC--LDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISD- 97

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
              NI+   +   +R+D    +      +G+  ++ ++  L+ GL  + K  +A   F +
Sbjct: 98  SILNIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKK 157

Query: 246 MI-EKGLLPQKVTFETLYRGL 265
           ++ EK   P +V + T+  GL
Sbjct: 158 LVREKICEPNEVMYGTVMNGL 178



 Score = 43.9 bits (102), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 29/151 (19%), Positives = 68/151 (45%), Gaps = 10/151 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++++L++G+ K   ++ A     ++     + N+  Y V++NG+C+             +
Sbjct: 415 LHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCK----------NDRV 464

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R A  +F+++   G+ PDV ++++++  + R          L  M++ G      TY+ +
Sbjct: 465 REAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVI 524

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
           ++      +I +    + EM   G    A T
Sbjct: 525 MQGFFRSNKISEIVSFMKEMAGRGFSFDATT 555


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 146/297 (49%), Gaps = 30/297 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKT 59
           MYT++I G+CK  ++D A   L EM ERGV+ +V+ ++ L+ G+CR+  +  + E+F+  
Sbjct: 1   MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 60

Query: 60  -----------------------IRNAEKVFDEMRVR-----GIEPDVTSFSIVLHVYSR 91
                                  I    ++FD+M  R     G EPDV S+S V+    +
Sbjct: 61  GEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCK 120

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
           A +   + +    M+  G  P V TYSS++  LC   R+++A  LL ++    + P A  
Sbjct: 121 AQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMY 180

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           YN     ++ +   +  ++L   MKE G  + N+  +N ++      +  +   + +  +
Sbjct: 181 YNAVVNGFKRQGKPSECLELLLHMKEKGFGI-NIIDFNAMLHALWKNDEQEKACQFFERL 239

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             SG  P++ +Y + +HGLC+  K  EA +  +EM+E  + P  +T+ ++  G  ++
Sbjct: 240 LKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKA 296



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 128/291 (43%), Gaps = 30/291 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI G CK++R+D A   L ++    + P  + YN ++NG  R+    PSE  E  + 
Sbjct: 146 YSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGK--PSECLELLLH 203

Query: 62  NAEK---------------------------VFDEMRVRGIEPDVTSFSIVLHVYSRAHQ 94
             EK                            F+ +   G +P+V ++++ +H   +A +
Sbjct: 204 MKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGK 263

Query: 95  PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
              +   L  M E  + P V TYSS++   C  GR++ A+++   M+ +   P   T+  
Sbjct: 264 VDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMT 323

Query: 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
               +   K +  A +++  M   G  +P + +YN+L+      + ++   EI++ +K  
Sbjct: 324 LLHGFSEHKKSREAFRVHEDMVNAGF-IPGLQTYNVLMDCVCGADSVESALEIYHKMKRK 382

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
              PD ++Y  LI  LC  ++  EA ++   M    ++P       L   L
Sbjct: 383 KRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVL 433



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 130/304 (42%), Gaps = 45/304 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           Y   ++G CK  ++D A R L EM+E  V P+V+TY+ +++G C+   +           
Sbjct: 251 YNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMM 310

Query: 51  ------HPSERF--------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                 HP             K  R A +V ++M   G  P + ++++++     A   +
Sbjct: 311 VHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVE 370

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+  + MK K   P   TY+ +++CLC   R+++A+E L  M  + V P+    +   
Sbjct: 371 SALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALV 430

Query: 157 K-------------------EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
           +                   E     + + A+++  QM   G+  P+  +Y  ++     
Sbjct: 431 EVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGV-RPDEATYVAVLRSLCG 489

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
           L+R+D     +  +   G  P L +YT+LI   C      +A + F  M+  G  PQ  T
Sbjct: 490 LDRVDSAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADDAFRIFEAMVAAGFTPQAQT 549

Query: 258 FETL 261
             TL
Sbjct: 550 MRTL 553



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 130/283 (45%), Gaps = 15/283 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I   CK  R+D A  +   M   G  PNVVTY+ L++G+C+             + 
Sbjct: 111 YSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKV----------DRVD 160

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +++   + P    ++ V++ + R  +P   L+ L  MKEKG    +  +++++
Sbjct: 161 EAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAML 220

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L      E A +    ++++G  P+  TYN            + A ++  +M E  + 
Sbjct: 221 HALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKV- 279

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ +I  F    RMD   +++  +      P   ++  L+HG  E +K +EA +
Sbjct: 280 TPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFR 339

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD----MLRTWRRLKKK 280
              +M+  G +P   T+  L   +  +D     L  + ++K+K
Sbjct: 340 VHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRK 382



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 94/191 (49%), Gaps = 7/191 (3%)

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y++V+   C  G+++ A ELL EM   GV      ++   +    +   + A++ ++ M 
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMG 61

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK-----GSGLGPDLDSYTMLIHGLC 231
           E+  C PN+ +YN ++      NR+D   E+++D++       G  PD+ SY+ +I  LC
Sbjct: 62  EE--CSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALC 119

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSE 291
           + Q+  +A +YF  M   G  P  VT+ +L  GL + D +     L  +L  E +   + 
Sbjct: 120 KAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAM 179

Query: 292 FQNYHFKPYRR 302
           + N     ++R
Sbjct: 180 YYNAVVNGFKR 190


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 143/279 (51%), Gaps = 14/279 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L++ + ++ + D  +RF  +MI  G +P V TYN++++ +C+          E  I  A 
Sbjct: 104 LLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCK----------EGDIEAAS 153

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +F+EM+ RG+ PD  +++ ++  Y +  +   ++     MK     P V TY++++ C 
Sbjct: 154 GLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCF 213

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G++    E   EM ++G+ P+  +Y+     +        A+K Y  M+  GL VPN
Sbjct: 214 CKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGL-VPN 272

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
            H+Y  L+  +  +  +     + +++   G+  ++ +YT LI GLC+ ++ KEA + F 
Sbjct: 273 EHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFG 332

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           +M+  G++P   ++  L  G +++   +   R  + LDE
Sbjct: 333 KMVTAGVIPNLASYTALIHGFVKA---KNMDRALELLDE 368



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 127/268 (47%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G+ K+ R+D    F  EM     EP+V+TYN L+N  C+   L     F     
Sbjct: 171 YNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEF----- 225

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                F EM+  G++P+V S+S ++  + +    Q +L     M+  G+ P   TY+S+V
Sbjct: 226 -----FREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLV 280

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + DA  L  EM + GV  +  TY          +    A +L+ +M   G+ 
Sbjct: 281 DAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGV- 339

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+ SY  LI  F+    MD   E+ +++KG G+ PDL  Y   I  LC  +K + A  
Sbjct: 340 IPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKV 399

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              EM EKG+      + TL     +S+
Sbjct: 400 VMNEMQEKGIKANTFIYTTLMDAYFKSE 427



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 148/295 (50%), Gaps = 18/295 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSL+  +CKI  +  A R   EM + GVE NVVTY  L++G+C        ER    I+
Sbjct: 276 YTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLC------DVER----IK 325

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE++F +M   G+ P++ S++ ++H + +A     +L+ L+ MK +GI P +  Y + +
Sbjct: 326 EAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFI 385

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   +IE A+ ++ EM   G+  +   Y      Y   ++ +  + L  +M E  + 
Sbjct: 386 WSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIE 445

Query: 182 VPNMHSYNILIGMF----MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
           V  + ++ +LI       +    +D    I ND    GL  +   YT +I GLC++ + +
Sbjct: 446 VTAV-TFCVLIDGLCKNKLVSKAIDYFGRISNDF---GLQANAAIYTAMIDGLCKEDQVE 501

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEF 292
            A   F +M +KGL+P +  + +L  G ++   +     L+ K+ E  +  G+ F
Sbjct: 502 AATTLFEQMAQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGVESGARF 556



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 19/178 (10%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV------------------RNGVC 146
           M   G   T+ +Y  V   L       DA  +L EMV                  RN   
Sbjct: 1   MNRNGFKHTIESYCIVAHILFCARMYYDANRILREMVLSKAELKDCDVFDVLWSTRNVCV 60

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P    ++  F           A++ + +MK   +  P   S N L+  F  L + D ++ 
Sbjct: 61  PGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRV-FPKTRSCNGLLHKFARLGKTDGMKR 119

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            + D+ G+G  P + +Y ++I  +C++   + A   F EM  +GL+P  VT+ ++  G
Sbjct: 120 FFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDG 177



 Score = 37.0 bits (84), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 54/291 (18%), Positives = 111/291 (38%), Gaps = 62/291 (21%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPN--------------------------- 33
           +Y + I+  C + +I+ A+  + EM E+G++ N                           
Sbjct: 380 LYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEM 439

Query: 34  --------VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85
                    VT+ VL++G+C+      ++   K I    ++ ++    G++ +   ++ +
Sbjct: 440 LELDIEVTAVTFCVLIDGLCK------NKLVSKAIDYFGRISNDF---GLQANAAIYTAM 490

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           +    +  Q + +      M +KG+ P    Y+S++      G +  A  L  +M   GV
Sbjct: 491 IDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGV 550

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKED-GLCVPNMHSYNILIGMFMALNRMDMV 204
              A          R        +KL  +M    G+   N+ S +  I    +LN ++ V
Sbjct: 551 ESGA----------RFGDLCQNTIKLSLRMGARVGVQHYNLGSADSYIS--SSLNDLNSV 598

Query: 205 REIWNDVKGSGL-----GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
                D+ G G      G  LD+        C  + ++ + Q   +++E+G
Sbjct: 599 DGPPRDIDGIGAAVGRDGDSLDNDGGSSSADCMHESYRNSMQIHNDVVEEG 649


>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
 gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
          Length = 551

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 135/281 (48%), Gaps = 11/281 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ GW     + M +    EMI+ G+ P+VV Y +L++  C+               
Sbjct: 273 YTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCD---------- 322

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KVF EM   G  P    + ++++      +   +L      K+ G    V T ++VV
Sbjct: 323 EAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDEALKYFEQYKKSGFPMEVPTCNAVV 382

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   + E A +++ EM    + P++ TY+         +    A  ++++M  DG C
Sbjct: 383 GAYCRASKFEHAFKMVDEMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDG-C 441

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P +++Y +++GMF +  R+DM   +W  +   G+ P +  ++ LI+GLC + + +EAC 
Sbjct: 442 EPQLNTYTMMVGMFCSNGRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACV 501

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           YF EM++KG+ P    F  L   L++   +   + +  KLD
Sbjct: 502 YFQEMLDKGIRPPGQLFSNLKEALVEGGRISLAQEMASKLD 542



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 1/195 (0%)

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
           R  G       F  ++    +  Q +L    +  M+ +G+  +  T+  +V+      ++
Sbjct: 157 RQEGFSYTAEGFHNLIEALGKIKQFKLVWSLVETMRCRGLL-SKDTFKLIVRRYARARKV 215

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           ++A E   +M   G+      YN         K    A  +Y++MK  G  VP++ +Y +
Sbjct: 216 KEAVETFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTV 275

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           L+  +     + MV+ ++ ++  +G+ PD+ +Y MLI   C+  K  EA + F EM   G
Sbjct: 276 LMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASG 335

Query: 251 LLPQKVTFETLYRGL 265
            +P    +  L  GL
Sbjct: 336 CMPSPHVYCMLINGL 350


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 152/300 (50%), Gaps = 17/300 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++T+LI G+ K  R+D A   L EM    ++ ++V YNV ++   +   +  + +F    
Sbjct: 205 LFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKF---- 260

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                 F E+   G++PD  +++ ++ V  +A++   +++    +++    P    Y+++
Sbjct: 261 ------FHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTM 314

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +    S G+ ++A  LL      G  PS   YNC     R     + A+K++ +MK+D  
Sbjct: 315 IMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA- 373

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+ +YNILI M     ++D   E+ + ++ +GL P++ +  +++  LC+ QK  EAC
Sbjct: 374 -APNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEAC 432

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKKKLDEE----SITFGSEFQNY 295
             F EM  K   P ++TF +L  GL +   +   ++  +K LD +    SI + S  +N+
Sbjct: 433 AMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNF 492



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 117/264 (44%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI+G  K    +        M E+G   +   YN++++G C+             + 
Sbjct: 555 YSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGK----------VN 604

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ +EM+ +G EP V ++  V+   ++  +   +       K K I   V  YSS++
Sbjct: 605 KAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLI 664

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 GRI++A  +L E+++ G+ P+  T+N         ++ N A+  ++ MKE   C
Sbjct: 665 DGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELK-C 723

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +Y ILI     + + +     W +++  G+ P   SYT +I GL +     EA  
Sbjct: 724 TPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGA 783

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F      G +P    +  +  GL
Sbjct: 784 LFDRFKANGGVPDSACYNAMIEGL 807



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 127/299 (42%), Gaps = 22/299 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTSLI  +    R +   +   +MI +   P++   N  ++  C   +  P +      
Sbjct: 484 VYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMD--CMFKAGEPEK------ 535

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                +F+E++ R   PD  S+SI++H   +A     + +    MKE+G       Y+ V
Sbjct: 536 --GRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIV 593

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C CG++  A +LL EM   G  P+  TY             + A  L+ + K   +
Sbjct: 594 IDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRI 653

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            + N+  Y+ LI  F  + R+D    I  ++   GL P+L ++  L+  L + ++  EA 
Sbjct: 654 EL-NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEAL 712

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
             F  M E    P +VT+  L  GL +       R+  K     +  F  E Q    KP
Sbjct: 713 VCFQSMKELKCTPNQVTYGILINGLCKV------RKFNK-----AFVFWQEMQKQGMKP 760



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 123/285 (43%), Gaps = 17/285 (5%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           K+ ++D A +   EM ++   PN+ TYN+L++ +CR   L            A ++ D M
Sbjct: 355 KMGKVDEALKVFEEM-KKDAAPNLSTYNILIDMLCRAGKLD----------TAFELRDSM 403

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
           +  G+ P+V + +I++    ++ +   +      M  K   P   T+ S++  L   GR+
Sbjct: 404 QKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRV 463

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           +DA ++  +M+ +    ++  Y    K +          K+Y+ M     C P++   N 
Sbjct: 464 DDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQN-CSPDLQLLNT 522

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
            +         +  R ++ ++K     PD  SY++LIHGL +     E  + F  M E+G
Sbjct: 523 YMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQG 582

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGS 290
            +     +  +  G  +   +    +L      K  +   +T+GS
Sbjct: 583 CVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGS 627



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 123/282 (43%), Gaps = 15/282 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+    +    D  ++ LGEM   G  P+V T   ++ G C +A+          +R
Sbjct: 101 YNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLG-CVKAN---------KLR 150

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               V   MR     P  ++++ ++  +S  +   + L     M+E G  PTV  +++++
Sbjct: 151 EGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLI 210

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +     GR++ A  LL EM  + +      YN     +      + A K + +++ +GL 
Sbjct: 211 RGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGL- 269

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y  +IG+    NR+D   E++  ++ +   P   +Y  +I G     K+ EA  
Sbjct: 270 KPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYS 329

Query: 242 YFVEMIEKGLLPQKVTFE---TLYRGLIQSD-MLRTWRRLKK 279
                  KG +P  + +    T  R + + D  L+ +  +KK
Sbjct: 330 LLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKK 371



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 10/184 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+SLI G+ K+ RID A   L E++++G+ PN+ T+N LL+ + +           + I
Sbjct: 659 IYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVK----------AEEI 708

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A   F  M+     P+  ++ I+++   +  +   +      M+++G+ P+  +Y+++
Sbjct: 709 NEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTM 768

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L   G I +A  L      NG  P +  YN   +       A  A  L+ + +  GL
Sbjct: 769 ISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGL 828

Query: 181 CVPN 184
            + N
Sbjct: 829 PIHN 832



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 79/196 (40%), Gaps = 38/196 (19%)

Query: 111 CPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET------------------- 151
           CP   +Y+S++  +  C   +  +++LGEM   G  PS  T                   
Sbjct: 97  CPE--SYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYD 154

Query: 152 ----------------YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
                           Y      +     ++  + L++QM+E G   P +H +  LI  F
Sbjct: 155 VVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGY-EPTVHLFTTLIRGF 213

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
               R+D    + +++K S L  D+  Y + I    +  K   A ++F E+   GL P +
Sbjct: 214 AKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDE 273

Query: 256 VTFETLYRGLIQSDML 271
           VT+ ++   L +++ L
Sbjct: 274 VTYTSMIGVLCKANRL 289


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 151/322 (46%), Gaps = 40/322 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  LI G+CK   ID A + L  M    V P+VVTYN +L  +C    L  +        
Sbjct: 187 YNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL 243

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  +  A K+ DEMR +G +PDV +++++++   +  +  
Sbjct: 244 QKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 303

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++  LN M   G  P V T++ +++ +CS GR  DAE+LL +M+R G  PS  T+N   
Sbjct: 304 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILI 363

Query: 157 KEYRGRKDANG-AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
             +  R+   G A+ +  +M   G C PN  SYN L+  F    +MD   E  + +   G
Sbjct: 364 -NFLCRQGLLGRAIDILEKMPMHG-CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG 421

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
             PD+ +Y  L+  LC+  K   A +   ++  KG  P  +T+ T+  GL  S + +T R
Sbjct: 422 CYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGL--SKVGKTER 479

Query: 276 RLK-------KKLDEESITFGS 290
            +K       K L  + IT+ S
Sbjct: 480 AIKLLDEMRRKGLKPDIITYSS 501



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 145/298 (48%), Gaps = 22/298 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI   CK + +  A + L EM  +G +P+VVTYNVL+NG+C+   L  + +F     
Sbjct: 254 YTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKF----- 308

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 + M   G +P+V + +I+L       +   +   L+ M  KG  P+V T++ ++
Sbjct: 309 -----LNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILI 363

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +  A ++L +M  +G  P++ +YN     +   K  + A++    M   G C
Sbjct: 364 NFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG-C 422

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN L+       ++D+  EI N +   G  P L +Y  +I GL +  K + A +
Sbjct: 423 YPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIK 482

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
              EM  KGL P  +T+ +L  GL +          + K+D E+I F  + +    +P
Sbjct: 483 LLDEMRRKGLKPDIITYSSLVSGLSR----------EGKVD-EAIKFFHDLEGLGIRP 529



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 122/252 (48%), Gaps = 14/252 (5%)

Query: 20  RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDV 79
           +FL  M+ RG  P+++    L+ G CR           KT + A  V + +   G  PDV
Sbjct: 135 KFLESMVYRGDIPDIIPCTSLIRGFCR---------IGKT-KKATWVMEILEQSGAVPDV 184

Query: 80  TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
            ++++++  Y ++ +   +L  L+ M    + P V TY+++++ LC  G+++ A E+L  
Sbjct: 185 ITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVLDR 241

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
            ++    P   TY    +          AMKL  +M+  G   P++ +YN+LI       
Sbjct: 242 QLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKG-SKPDVVTYNVLINGICKEG 300

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           R+D   +  N++   G  P++ ++ +++  +C   +W +A +   +M+ KG  P  VTF 
Sbjct: 301 RLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFN 360

Query: 260 TLYRGLIQSDML 271
            L   L +  +L
Sbjct: 361 ILINFLCRQGLL 372



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 129/276 (46%), Gaps = 28/276 (10%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS----ERF---- 56
           ++   C   R   AE+ L +M+ +G  P+VVT+N+L+N +CR+  L  +    E+     
Sbjct: 327 ILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG 386

Query: 57  -----------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
                            EK +  A +  D M  RG  PD+ +++ +L    +  +  +++
Sbjct: 387 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 446

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           + LN +  KG  P + TY++V+  L   G+ E A +LL EM R G+ P   TY+      
Sbjct: 447 EILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 506

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYN-ILIGMFMALNRMDMVREIWNDVKGSGLGP 218
                 + A+K +  ++  G+  PN  +YN I++G+  +  + D   +    +      P
Sbjct: 507 SREGKVDEAIKFFHDLEGLGI-RPNAITYNSIMLGLCKS-RQTDRAIDFLAYMISKRCKP 564

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
              +YT+LI G+  +   KEA     E+  +GL+ +
Sbjct: 565 TEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKK 600


>gi|302801478|ref|XP_002982495.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
 gi|300149594|gb|EFJ16248.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
          Length = 448

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 141/301 (46%), Gaps = 12/301 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI   CK NR D A +    M+E+ + PN+  Y  LL   CR           + + 
Sbjct: 152 YTALISVLCKHNRADDAMKVFDIMVEKEIVPNLDVYTSLLAAHCR----------TRKLD 201

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F EM  RG  P  +++ ++L       +  L+ D  + M+ +G  P   TY+S++
Sbjct: 202 GAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLI 261

Query: 122 KCLCSCGRIEDAEELLGEMVRN-GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              C  GRI +A+ L  E++        A  YN   +          A+++   M + G 
Sbjct: 262 YGCCMAGRITEAKVLFKEVLEGEKALLDAGIYNVLIEGLCRASKVEEALEVTAGMVDKG- 320

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C+P + +YN LI  F   N +D   +++  ++  G  P+   Y+  I GLC+  K  EA 
Sbjct: 321 CIPTLQTYNALIMGFFKANEVDKALQLFRVMEEKGFSPNTMIYSTFIDGLCKVGKINEAH 380

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
           ++F + +E+G +P  VT+  L RGL  ++ +    RL +++ E         +   F+  
Sbjct: 381 EFFQQSVERGCVPDNVTYNALIRGLFGANRMDEAHRLYREMGERGYIADRSLRTLAFQRS 440

Query: 301 R 301
           R
Sbjct: 441 R 441



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 132/288 (45%), Gaps = 15/288 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++         D   +F    +  G  P+V+ Y  +L+ + +              R
Sbjct: 83  YNAILKALMCSGDFDGGFKFSDIAVGDGSLPHVLAYKTMLDCLIKTGK----------TR 132

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V  EM  + + PD  +++ ++ V  + ++   ++   + M EK I P +  Y+S++
Sbjct: 133 EASEVVGEMIKKSV-PDGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVPNLDVYTSLL 191

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   +++ A  L  EM++ G  PSA TY    +       +  A  ++  M+  G  
Sbjct: 192 AAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRSRGH- 250

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIWNDV-KGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           VP+ ++Y  LI G  MA  R+   + ++ +V +G     D   Y +LI GLC   K +EA
Sbjct: 251 VPDENTYASLIYGCCMA-GRITEAKVLFKEVLEGEKALLDAGIYNVLIEGLCRASKVEEA 309

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            +    M++KG +P   T+  L  G  +++ +    +L + ++E+  +
Sbjct: 310 LEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRVMEEKGFS 357



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 107/264 (40%), Gaps = 47/264 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+ G  K++ +D A   L  M+  G +P+VVT  +L++  C            K + 
Sbjct: 13  YNLLVRGLTKLSSVDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEM----------KRVG 62

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++F E+   G+   + +++ +L     +          +     G  P V  Y +++
Sbjct: 63  EVCELFQELESNGVAVGMLAYNAILKALMCSGDFDGGFKFSDIAVGDGSLPHVLAYKTML 122

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CL   G+  +A E++GEM++  V                                    
Sbjct: 123 DCLIKTGKTREASEVVGEMIKKSV------------------------------------ 146

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y  LI +    NR D   ++++ +    + P+LD YT L+   C  +K   A +
Sbjct: 147 -PDGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVPNLDVYTSLLAAHCRTRKLDGAYR 205

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            FVEMI++G  P   T+  L R L
Sbjct: 206 LFVEMIQRGYGPSASTYGLLLRCL 229



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M EDG+ VP+  SYN+L+     L+ +D  R + + + G G  PD+ +  +L+   CE +
Sbjct: 1   MLEDGV-VPDRDSYNLLVRGLTKLSSVDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMK 59

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           +  E C+ F E+   G+    + +  + + L+ S
Sbjct: 60  RVGEVCELFQELESNGVAVGMLAYNAILKALMCS 93


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 137/263 (52%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI+G CK  +++ A      M+E G+EPNVVTY  L+ G C           E  ++
Sbjct: 250 YTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCN----------EGHLQ 299

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++   M   G+ P+  +FS+++    +  + + +   L  + +KG+      Y+S++
Sbjct: 300 CAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLI 359

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+I+ A+EL+ +M+  G  P A +Y+        +K  + A  +   M E G+ 
Sbjct: 360 DGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQ 419

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              + +Y I+I   +     +  ++I++ +  +G+ PD+ +YT+ +   CE+ + ++A  
Sbjct: 420 ASPV-TYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAES 478

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
             V+M+++G+ P  VT+ TL RG
Sbjct: 479 MIVQMVDRGVFPNLVTYNTLIRG 501



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 143/313 (45%), Gaps = 36/313 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR-----ASLHPSER 55
           +YTSLI G CK  +ID A+  + +MI  G  P+  +Y+ L++G+CR+     A+L   + 
Sbjct: 354 VYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDM 413

Query: 56  FEKTIRNA--------------------EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
            EK I+ +                    +K+FD+M   GI PD+ ++++ +  Y    + 
Sbjct: 414 MEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRM 473

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + +   +  M ++G+ P + TY+++++   + G +  A      MV  G  P+ ++Y   
Sbjct: 474 EDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVL 533

Query: 156 FKEYRGRKDANGAMKLYR--QMKEDGLCVPNMHS---------YNILIGMFMALNRMDMV 204
            +    +  ++ ++ +++   MK+  + + ++           Y+  I     ++R++  
Sbjct: 534 LRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEA 593

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           +  +  ++ + L P  D YT +I   C  +   +A      M + G LP   ++  +   
Sbjct: 594 KHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIISS 653

Query: 265 LIQSDMLRTWRRL 277
           L +    RT + +
Sbjct: 654 LCEGGNFRTAKEV 666



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 21/289 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI  +C    I  A++ L  ++  G+ P+   Y   + G CR   L           
Sbjct: 75  YTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGML----------T 124

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A +VF  M +RG      +++ +LH    A   + ++     M+     P    Y+++V
Sbjct: 125 HACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMV 184

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR E+AE LL E + NG  P+   YN     Y    +   A+K++  M +   C
Sbjct: 185 HGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGM-DGNRC 243

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  LI       +++    +++ +  +GL P++ +YT LI G C +   + A +
Sbjct: 244 SPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFR 303

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
               M   GL+P   TF  L   L +          ++K++E  +  GS
Sbjct: 304 LLHLMETNGLVPNDWTFSVLIDALCK----------REKVEEAQLFLGS 342



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 128/310 (41%), Gaps = 26/310 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC---------------R 46
           YTS + G+C+   +  A R    M  RG      TY  LL+G+                R
Sbjct: 110 YTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMR 169

Query: 47  RASLHPSERFEKTIRNA----------EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
             S  P      T+ +           E + +E    G EP++  ++ ++  Y  A + +
Sbjct: 170 ADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEME 229

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L     M      P V TY+ ++  LC  G++E A  L   MV  G+ P+  TY    
Sbjct: 230 HALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALI 289

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           +          A +L   M+ +GL VPN  ++++LI       +++  +     +   G+
Sbjct: 290 QGQCNEGHLQCAFRLLHLMETNGL-VPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGV 348

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
             +   YT LI GLC+  K   A +   +MI +G +P   ++ +L  GL +   L     
Sbjct: 349 KVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATL 408

Query: 277 LKKKLDEESI 286
           + + + E+ I
Sbjct: 409 MLEDMMEKGI 418


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 150/299 (50%), Gaps = 46/299 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMI----------------------------------- 26
           Y +L+YG+C++  ++MA R   +MI                                   
Sbjct: 271 YRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLG 330

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
           + G+ PNV  YN L++ +C+      +ERF+    +A+++F EM  RG+EP+  +++I++
Sbjct: 331 DLGMVPNVFAYNALIDKLCK------NERFD----DADRLFKEMAGRGLEPNEVTYAILI 380

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
           H   +    + +L   + M++KGI  TV  Y+S++   C  G ++ A  LL  MV+ G+ 
Sbjct: 381 HALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLT 440

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+A +Y+          D + AM+L+R+M E G+   N +++  LI  F    +MD    
Sbjct: 441 PTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNN-YTFTALINGFCKDKKMDEAAR 499

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +++ +  S + P+  ++ ++I G C     ++A Q + +M+E GL P   T+ +L  GL
Sbjct: 500 LFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGL 558



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 136/270 (50%), Gaps = 19/270 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI   CK  R D A+R   EM  RG+EPN VTY +L++ +C+R            I 
Sbjct: 341 YNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRG----------MIE 390

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK----LNFMKEKGICPTVATY 117
           +A  +FD+MR +GI+  V  ++ +++ Y +    Q SLD+    L+ M ++G+ PT A+Y
Sbjct: 391 DALCLFDKMRDKGIKVTVYPYNSLINGYCK----QGSLDRARGLLSGMVKEGLTPTAASY 446

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           S ++  LC  G +  A EL  EM   G+  +  T+      +   K  + A +L+ +M +
Sbjct: 447 SPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMID 506

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
             + +PN  ++N++I  +  +  +    ++++ +   GL PD  +Y  LI GLC      
Sbjct: 507 SNV-IPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVS 565

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           +A ++  ++     +    +   L  GL +
Sbjct: 566 KANEFVADLENSYAVLNNFSLTALLYGLFR 595



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 135/322 (41%), Gaps = 62/322 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +I G+C +  I  A +   +M+E G++P+  TY  L++G+C  + +  +  F   + 
Sbjct: 516 FNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLE 575

Query: 62  NAEKV-------------------------FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           N+  V                         +DEM VRG++ D+ SF+I+++   + H  +
Sbjct: 576 NSYAVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKE 635

Query: 97  LSLDKLNFMKEKGI-----------------------------------CPTVATYSSVV 121
            S      MKE+G+                                    P   T++ ++
Sbjct: 636 KSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLI 695

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +  AE L  EM+   V P+  TYNCF   +    D   A  L+  M +  L 
Sbjct: 696 NNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLA 755

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++ S+NILI       ++    ++   +  SG  PD  SY+ +IH LC+     +A +
Sbjct: 756 --SIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFE 813

Query: 242 YFVEMIEKGLLPQKVTFETLYR 263
            + EM+ KGL P  V +    R
Sbjct: 814 LWNEMLYKGLKPDVVAYNIFIR 835



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 123/285 (43%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+YG CK  R+  A      M+  GV  + VTY  L+ G CR       E  E  +R
Sbjct: 236 YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRM------EELEMALR 289

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +  +M   G  P   + S ++    +    + +      + + G+ P V  Y++++
Sbjct: 290 ----ITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALI 345

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R +DA+ L  EM   G+ P+  TY         R     A+ L+ +M++ G+ 
Sbjct: 346 DKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIK 405

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V  ++ YN LI  +     +D  R + + +   GL P   SY+ LI GLC       A +
Sbjct: 406 V-TVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAME 464

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM E+G+     TF  L  G  +   +    RL  K+ + ++
Sbjct: 465 LHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNV 509



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 125/285 (43%), Gaps = 11/285 (3%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           + +++   KI +  +A     +M++ GV  +   Y   +   C            + +  
Sbjct: 167 SQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCE----------SRNLDG 216

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  +   M   G++     ++++++   +  + Q +++  N M   G+     TY ++V 
Sbjct: 217 ARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVY 276

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C    +E A  +  +M+R G  PS    +    E R ++    A  L  ++ + G+ V
Sbjct: 277 GFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM-V 335

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN+ +YN LI       R D    ++ ++ G GL P+  +Y +LIH LC++   ++A   
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           F +M +KG+      + +L  G  +   L   R L   + +E +T
Sbjct: 396 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLT 440



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 137/312 (43%), Gaps = 40/312 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y SLI G+CK   +D A   L  M++ G+ P   +Y+ L+ G+CR   L  +        
Sbjct: 411 YNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMA 470

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +K +  A ++FD+M    + P+  +F++++  Y      +
Sbjct: 471 ERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIR 530

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM-----VRNGVCPSAET 151
            +    + M E G+ P   TY S++  LC    +  A E + ++     V N    +A  
Sbjct: 531 KAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALL 590

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE--IWN 209
           Y   F+E R  +       L+ +M   G+ + ++ S+ I++  + AL + D  +   ++ 
Sbjct: 591 YG-LFREGRFTE----TYHLWDEMAVRGVKL-DLVSFTIIV--YAALKQHDKEKSCVLFR 642

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           ++K  G+ PD   YT +I  L +++   +A   + +M+  G  P  VT   L   L +S 
Sbjct: 643 EMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSG 702

Query: 270 MLRTWRRLKKKL 281
            L +   L K++
Sbjct: 703 YLGSAELLCKEM 714



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 12/191 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI   CK   +  AE    EM+   V PN  TYN  L+       +  ++     + 
Sbjct: 691 HTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAM- 749

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                     ++G    + SF+I++    +A + Q ++D +  + E G  P   +YS+++
Sbjct: 750 ----------LQGHLASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTII 799

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G I  A EL  EM+  G+ P    YN F +      +++ A+ +Y  M   G+ 
Sbjct: 800 HELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGV- 858

Query: 182 VPNMHSYNILI 192
            PN  +Y  L+
Sbjct: 859 QPNWDTYRALL 869



 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 18/201 (8%)

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
           L      GI     T S ++  L    +   A +L  +M+++GV      Y    + Y  
Sbjct: 151 LGLSLSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCE 210

Query: 162 RKDANGAMKLYRQMKEDGL---CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218
            ++ +GA  L  +M+ +G+    VP    YN+L+       R+    E+ N +   G+  
Sbjct: 211 SRNLDGARGLVVRMESEGVKASAVP----YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTA 266

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
           D  +Y  L++G C  ++ + A +   +MI  G +P +     +       D LR     K
Sbjct: 267 DEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMI------DELR-----K 315

Query: 279 KKLDEESITFGSEFQNYHFKP 299
           K+L EE+ +   +  +    P
Sbjct: 316 KELVEEAFSLACKLGDLGMVP 336


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 137/263 (52%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI+G CK  +++ A      M+E G+EPNVVTY  L+ G C           E  ++
Sbjct: 250 YTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCN----------EGHLQ 299

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++   M   G+ P+  +FS+++    +  + + +   L  + +KG+      Y+S++
Sbjct: 300 CAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLI 359

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+I+ A+EL+ +M+  G  P A +Y+        +K  + A  +   M E G+ 
Sbjct: 360 DGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQ 419

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              + +Y I+I   +     +  ++I++ +  +G+ PD+ +YT+ +   CE+ + ++A  
Sbjct: 420 ASPV-TYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAES 478

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
             V+M+++G+ P  VT+ TL RG
Sbjct: 479 MIVQMVDRGVFPNLVTYNTLIRG 501



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 11/234 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ LI   CK  +++ A+ FLG ++++GV+ N V Y  L++G+C+             I 
Sbjct: 320 FSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGK----------ID 369

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++  +M   G  PD  S+S ++    R  +   +   L  M EKGI  +  TY+ ++
Sbjct: 370 AADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIII 429

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L      E  +++  +M+  G+ P   TY  F + Y        A  +  QM + G+ 
Sbjct: 430 DELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGV- 488

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            PN+ +YN LI  +  L  +      +  + G G  P+ DSYT+L+  + +K  
Sbjct: 489 FPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSS 542



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 21/289 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI  +C    I  A++ L  ++  G+ P+   Y   + G CR   L           
Sbjct: 75  YTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGML----------T 124

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A +VF  M +RG      +++ +LH    A   + ++     M+     P    Y+++V
Sbjct: 125 HACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMV 184

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR E+AE LL E + NG  P+   YN     Y    +   A+K++  M +   C
Sbjct: 185 HGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGM-DGNRC 243

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  LI       +++    +++ +  +GL P++ +YT LI G C +   + A +
Sbjct: 244 SPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFR 303

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
               M   GL+P   TF  L   L +          ++K++E  +  GS
Sbjct: 304 LLHLMETNGLVPNDWTFSVLIDALCK----------REKVEEAQLFLGS 342



 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 125/320 (39%), Gaps = 46/320 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTS + G+C+   +  A R    M  RG      TY  LL+G+               +R
Sbjct: 110 YTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAG----------MVR 159

Query: 62  NAEKVFDEMRV-----------------------------------RGIEPDVTSFSIVL 86
            A  VF  MR                                     G EP++  ++ ++
Sbjct: 160 EAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALI 219

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
             Y  A + + +L     M      P V TY+ ++  LC  G++E A  L   MV  G+ 
Sbjct: 220 DGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLE 279

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+  TY    +          A +L   M+ +GL VPN  ++++LI       +++  + 
Sbjct: 280 PNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGL-VPNDWTFSVLIDALCKREKVEEAQL 338

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
               +   G+  +   YT LI GLC+  K   A +   +MI +G +P   ++ +L  GL 
Sbjct: 339 FLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLC 398

Query: 267 QSDMLRTWRRLKKKLDEESI 286
           +   L     + + + E+ I
Sbjct: 399 RQKKLSQATLMLEDMMEKGI 418



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 98/198 (49%), Gaps = 25/198 (12%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR-----ASLHPSER 55
           +YTSLI G CK  +ID A+  + +MI  G  P+  +Y+ L++G+CR+     A+L   + 
Sbjct: 354 VYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDM 413

Query: 56  FEKTIRNA--------------------EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
            EK I+ +                    +K+FD+M   GI PD+ ++++ +  Y    + 
Sbjct: 414 MEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRM 473

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + +   +  M ++G+ P + TY+++++   + G +  A      MV  G  P+ ++Y   
Sbjct: 474 EDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVL 533

Query: 156 FKEYRGRKDANGAMKLYR 173
            +    +  ++ ++ +++
Sbjct: 534 LRLVVKKSSSDNSVDIWK 551


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 144/293 (49%), Gaps = 26/293 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           Y +LIYG+C + ++  A   L EM+ + + PNV TYN+L++ +C+               
Sbjct: 237 YNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVML 296

Query: 47  RASLHPSERFEKT----------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +A + P      T          ++ A+ VF+ M + G+ PDV +++I+++ + +     
Sbjct: 297 KACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVD 356

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+    M +K + P + TYSS++  LC  GRI    +L+ EM   G      TY+   
Sbjct: 357 EALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLI 416

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A+ L+ +MK+  +  PN+ ++ IL+       R+   +E++ D+   G 
Sbjct: 417 DGLCKNGHLDRAIALFNKMKDQEI-RPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGY 475

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
             ++ +Y ++I+G C++   +EA     +M + G +P   TFET+   L + D
Sbjct: 476 HLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKD 528



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 141/285 (49%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CKI     A +FL ++  R  +P+VV YN +++ +C+           + + 
Sbjct: 167 YATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKY----------QLVS 216

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM V+GI  DV +++ +++ +    + + ++  LN M  K I P V TY+ +V
Sbjct: 217 EAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILV 276

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++++A+ +L  M++  V P   TY+     Y    +   A  ++  M   G+ 
Sbjct: 277 DALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGV- 335

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++H+Y ILI  F     +D    ++ ++    + P + +Y+ LI GLC+  +      
Sbjct: 336 TPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWD 395

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM ++G     +T+ +L  GL ++  L     L  K+ ++ I
Sbjct: 396 LIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEI 440



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 131/281 (46%), Gaps = 11/281 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++I   CK   +  A     EM  +G+  +VVTYN L+ G C    L          
Sbjct: 201 MYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKL---------- 250

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  + +EM ++ I P+V +++I++    +  + + +   L  M +  + P V TYS++
Sbjct: 251 KEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTL 310

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +        ++ A+ +   M   GV P   TY      +   K  + A+ L+++M +  +
Sbjct: 311 MDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNM 370

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VP + +Y+ LI       R+  V ++ ++++  G   D+ +Y+ LI GLC+      A 
Sbjct: 371 -VPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAI 429

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
             F +M ++ + P   TF  L  GL +   L+  + + + L
Sbjct: 430 ALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDL 470



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 131/299 (43%), Gaps = 46/299 (15%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C + +I      L ++++RG  P+ VT N L+ G+C +  +  +  F        
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFH------- 152

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
              D++  +G + +  S++ +++   +    + ++  L  +  +   P V  Y++++  +
Sbjct: 153 ---DKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAM 209

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C    + +A  L  EM   G+     TYN     +        A+ L  +M    +  PN
Sbjct: 210 CKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTIN-PN 268

Query: 185 MHSYNILIG-----------------MFMALNRMDMV------------------REIWN 209
           +++YNIL+                  M  A  + D++                  + ++N
Sbjct: 269 VYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFN 328

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            +   G+ PD+ +YT+LI+G C+ +   EA   F EM +K ++P  VT+ +L  GL +S
Sbjct: 329 AMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKS 387



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 90/179 (50%), Gaps = 10/179 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI G CK  RI      + EM +RG   +V+TY+ L++G+C+   L           
Sbjct: 377 YSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLD---------- 426

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F++M+ + I P++ +F+I+L    +  + + + +    +  KG    V TY+ ++
Sbjct: 427 RAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMI 486

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              C  G +E+A  +L +M  NG  P+A T+         + + + A KL RQM   GL
Sbjct: 487 NGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 1/219 (0%)

Query: 47  RASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMK 106
            +  H      + + +A   F+ M      P +  F+ +L  +++      ++   + ++
Sbjct: 27  HSHFHSQPPSIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLE 86

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
            KGI P + T + ++ C C  G+I     +L ++++ G  P   T N   K    +    
Sbjct: 87  LKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVK 146

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            A+  + ++   G  + N  SY  LI     +       +    + G    PD+  Y  +
Sbjct: 147 KALHFHDKLLAQGFQL-NQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTI 205

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           I  +C+ Q   EA   F EM  KG+    VT+ TL  G 
Sbjct: 206 IDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGF 244



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 1/157 (0%)

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
           S   ++DA      M+     P    +N     +   K  + A+ L  +++  G+  P++
Sbjct: 36  SIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGI-QPDL 94

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
            + NILI  F  + ++     +   +   G  PD  +   LI GLC K + K+A  +  +
Sbjct: 95  ITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDK 154

Query: 246 MIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           ++ +G    +V++ TL  G+ +    R   +  +K+D
Sbjct: 155 LLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKID 191


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 145/304 (47%), Gaps = 28/304 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y++LI G+C    I+  +    EM+ + V PNVVTY+ L+N +C++     + +   T+
Sbjct: 236 VYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTM 295

Query: 61  -------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                     +A KV D M  RG EP+  +++ +++   +  + 
Sbjct: 296 TGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRV 355

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN--GVCPSAETYN 153
             +L  L  M +KG  P V TYS++VK LC  G+I++A +LL  ++     + P    +N
Sbjct: 356 DDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFN 415

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
              +E   ++    A ++Y  M E G    N+ +YNILI  +++  ++    E+W D   
Sbjct: 416 LVIQELCKQRRLRHAKRVYYTMVERGF-PSNIVTYNILIDGYLSAGKLTKALELWKDAVD 474

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT 273
           SG+ P+  +YT+LI+GLC+ Q    A   F +    G  P    + TL   L +   +  
Sbjct: 475 SGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQ 534

Query: 274 WRRL 277
            R L
Sbjct: 535 ARNL 538



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 13/269 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L  G  K  R   A + L  M++RG EPN VTYN ++NG+C+          E  + 
Sbjct: 307 YTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCK----------EGRVD 356

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFM--KEKGICPTVATYSS 119
           +A  + + M  +G +PDV ++S ++       +   ++D LN +  KE  I P V  ++ 
Sbjct: 357 DALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNL 416

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           V++ LC   R+  A+ +   MV  G   +  TYN     Y        A++L++   + G
Sbjct: 417 VIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSG 476

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  PN  +Y +LI     +  + + + ++N  + SG  P +  Y  L+  LC +   ++A
Sbjct: 477 IS-PNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQA 535

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
              F EM      P  V+F  +  G +++
Sbjct: 536 RNLFQEMRNANHDPDVVSFNIIIDGTLKA 564



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 136/299 (45%), Gaps = 22/299 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ G+C+      A      M    + P+ V+YN ++NG+C+           K + 
Sbjct: 132 FNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCK----------GKRLV 181

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++F EM+    +P+  +FS ++  + +    +     L  M++ G+   V  YS+++
Sbjct: 182 EAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALI 241

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              CS G IE  +EL  EM+R  V P+  TY+C       ++    A ++   M   G  
Sbjct: 242 SGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMT--GCK 299

Query: 182 V-PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           V P++ +Y +L        R     ++ + +   G  P+  +Y  +I+GLC++ +  +A 
Sbjct: 300 VRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDAL 359

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
                M +KG  P  VT+ TL +GL          ++ + +D  ++    EF   H KP
Sbjct: 360 GILETMAKKGKKPDVVTYSTLVKGLCG------VGKIDEAVDLLNLLMSKEF---HIKP 409



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 136/290 (46%), Gaps = 28/290 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA---------SLHP 52
           Y ++I G CK  R+D A   L  M ++G +P+VVTY+ L+ G+C            +L  
Sbjct: 342 YNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLM 401

Query: 53  SERF------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ 94
           S+ F                  ++ +R+A++V+  M  RG   ++ +++I++  Y  A +
Sbjct: 402 SKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGK 461

Query: 95  PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
              +L+      + GI P  ATY+ ++  LC    +  A+ L  +   +G  P+   YN 
Sbjct: 462 LTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNT 521

Query: 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
                        A  L+++M+ +    P++ S+NI+I   +    ++  +E+  ++   
Sbjct: 522 LMASLCRESSVEQARNLFQEMR-NANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNM 580

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            L PD  ++++LI+   +  +  EA   +  M+  G +P  V F++L +G
Sbjct: 581 NLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKG 630



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 113/261 (43%), Gaps = 12/261 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +I   CK  R+  A+R    M+ERG   N+VTYN+L++G      L           
Sbjct: 414 FNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKL----------T 463

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +++ +    GI P+  +++++++   +     ++    N  +  G  PTV+ Y++++
Sbjct: 464 KALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLM 523

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    +E A  L  EM      P   ++N          D   A K       +   
Sbjct: 524 ASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESA-KELLLEMLNMNL 582

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+  +++ILI  F+ L ++D    ++  +   G  PD   +  L+ G   K K ++   
Sbjct: 583 VPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVS 642

Query: 242 YFVEMIEKG-LLPQKVTFETL 261
              +M +K  +L  K+T   L
Sbjct: 643 MLQQMADKDVVLDSKLTSTIL 663



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 95/217 (43%), Gaps = 4/217 (1%)

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           V  +M    + P  TS S ++  +    +P  +   L  + ++G    V  ++ ++K  C
Sbjct: 81  VHSKMASVSVFPCFTSLSALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFC 140

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
             G    A +L   M RN + P   +YN         K    A +L+++MK  G C PN 
Sbjct: 141 QSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMK-GGECKPNS 199

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
            +++ LI  F     ++    +  +++  GL  D+  Y+ LI G C K   +   + F E
Sbjct: 200 VTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNE 259

Query: 246 MIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           M+ K + P  VT+  L   L +    + W+   + LD
Sbjct: 260 MLRKNVTPNVVTYSCLMNALCKK---QKWKEAAQMLD 293



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 82/183 (44%), Gaps = 1/183 (0%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M    + P   + S++++   +  +   A  +LG +++ G   +   +N   K +    D
Sbjct: 85  MASVSVFPCFTSLSALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGD 144

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
           ++ AM L+  MK + L +P+  SYN +I       R+   +E++ ++KG    P+  +++
Sbjct: 145 SHKAMDLFCMMKRNCL-IPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFS 203

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            LI G C+    +E      EM + GL      +  L  G      +   + L  ++  +
Sbjct: 204 ALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRK 263

Query: 285 SIT 287
           ++T
Sbjct: 264 NVT 266


>gi|147862837|emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera]
          Length = 927

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 138/256 (53%), Gaps = 16/256 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV--CRRASLHPSERFEKT 59
           YT L+ GWC+I  +  A R   EMI++G +P+++ ++ +L G+  C++ S          
Sbjct: 375 YTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKS---------- 424

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
             +A K+F+ M+ +G  P+V +++I++    +  + + +++  + M + G  P  A Y+ 
Sbjct: 425 --DAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTC 482

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++    +  +++    LL EM   G      TYN   K    R+  + A+++Y++M ++G
Sbjct: 483 LITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNG 542

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  P +H+YN+++  +      +M   +W ++   G  PD +SY + I GL    + +EA
Sbjct: 543 I-QPTLHTYNMMMKSYFYTRNYEMGCAVWKEMGRKGCCPDDNSYIVFIGGLIRHGRSEEA 601

Query: 240 CQYFVEMIEKGL-LPQ 254
           C+Y  EMIEKG+  PQ
Sbjct: 602 CRYLEEMIEKGMKAPQ 617



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 99/243 (40%), Gaps = 8/243 (3%)

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH---QPQLSLDKLNFMKEKGICPTVATY 117
           + A  VF+ M+    +  V + + +L    RA    + Q   +KL    E    P + TY
Sbjct: 320 KKAVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKL----EDRFTPNLRTY 375

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + ++   C    + +A     EM+  G  P    ++   +     K  + A+KL+  MK 
Sbjct: 376 TVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKA 435

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G   PN+ +Y ILI       +M    E ++++  SG  PD   YT LI G   ++K  
Sbjct: 436 KGPS-PNVRTYTILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMD 494

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
           +      EM EKG      T+  L + +    M     R+ KK+ +  I       N   
Sbjct: 495 KVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNMMM 554

Query: 298 KPY 300
           K Y
Sbjct: 555 KSY 557



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 10/179 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G+    ++D     L EM E+G   +  TYN L+  +  R          +  
Sbjct: 479 VYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNR----------QMP 528

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A +++ +M   GI+P + ++++++  Y      ++       M  KG CP   +Y   
Sbjct: 529 DDAVRIYKKMIQNGIQPTLHTYNMMMKSYFYTRNYEMGCAVWKEMGRKGCCPDDNSYIVF 588

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +  L   GR E+A   L EM+  G+      YN F  ++      +   +L R+MK +G
Sbjct: 589 IGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYNKFAADFSRAGKPDILEELARKMKFEG 647



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 115/252 (45%), Gaps = 14/252 (5%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G   N  TYN +++ + R      + +FE  +     +  EM  +G+   + +FSI +  
Sbjct: 264 GFTHNSRTYNAMMSVLGR------TRQFESMM----GMLGEMGEKGLL-TMETFSIAIKA 312

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           ++ A + + ++     MK       V T + ++  L      ++A+ L  E + +   P+
Sbjct: 313 FAAAKERKKAVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALF-EKLEDRFTPN 371

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             TY      +   K+   A + + +M + G     +  + +L G+     + D ++ ++
Sbjct: 372 LRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIK-LF 430

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL-IQ 267
             +K  G  P++ +YT+LI  LC++ K KEA +YF EM++ G  P    +  L  G   Q
Sbjct: 431 EVMKAKGPSPNVRTYTILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQ 490

Query: 268 SDMLRTWRRLKK 279
             M + +  LK+
Sbjct: 491 KKMDKVYALLKE 502


>gi|242087579|ref|XP_002439622.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
 gi|241944907|gb|EES18052.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
          Length = 657

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 141/258 (54%), Gaps = 12/258 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+  WC    +  A R   EM+E+G++P+VV +N ++ G+ R       +R  + + 
Sbjct: 336 YTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLR------GQRRPEAL- 388

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K+F+ M+ +G  P+V ++++++  + +  +  ++++    M+E    P VATY+ ++
Sbjct: 389 ---KMFELMKAKGPPPNVWTYTMLIRDHCKRGKMDMAMECFEEMQEARCQPDVATYTCLL 445

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               +  R++    +L EM + G  P A TYN   K    RK  + A ++Y++M + GL 
Sbjct: 446 VGYGNAKRMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGL- 504

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            P +H+YN+++   F+      M   +W ++   G+ PD++SYT+ I+G     + +EA 
Sbjct: 505 EPTIHTYNMMMKSYFLGDRNYAMGCAVWEEMHRRGICPDVNSYTVFINGHIRHGRPEEAY 564

Query: 241 QYFVEMIEKGLLPQKVTF 258
           +Y  EMI KG+   ++ +
Sbjct: 565 KYIEEMINKGMTAPQIDY 582



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 12/245 (4%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M + G +  V ++N LL  +            E   R A +VFD+M  +   PD+ S++ 
Sbjct: 290 MKKNGFDDGVESFNCLLVALAN----------EGLGREARQVFDKMHGQ-YSPDLRSYTA 338

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           ++  +  A     +    N M EKG+ P V  ++++++ L    R  +A ++   M   G
Sbjct: 339 LMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRRPEALKMFELMKAKG 398

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
             P+  TY    +++  R   + AM+ + +M+E   C P++ +Y  L+  +    RMD V
Sbjct: 399 PPPNVWTYTMLIRDHCKRGKMDMAMECFEEMQE-ARCQPDVATYTCLLVGYGNAKRMDRV 457

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             +  ++   G  PD  +Y  LI  L  ++   +A + + +MI+KGL P   T+  + + 
Sbjct: 458 TAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLEPTIHTYNMMMKS 517

Query: 265 LIQSD 269
               D
Sbjct: 518 YFLGD 522



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 111/235 (47%), Gaps = 14/235 (5%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR---AHQPQLSLDKLNFMKEKGICPTVAT 116
           I+NA  VF+ M+  G +  V SF+ +L   +      + +   DK++        P + +
Sbjct: 280 IKNAVGVFELMKKNGFDDGVESFNCLLVALANEGLGREARQVFDKMHGQ----YSPDLRS 335

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQM 175
           Y++++   C+   + +A  +  EM+  G+ P    +N   +   RG++    A+K++  M
Sbjct: 336 YTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRRPE-ALKMFELM 394

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           K  G   PN+ +Y +LI       +MDM  E + +++ +   PD+ +YT L+ G    ++
Sbjct: 395 KAKGP-PPNVWTYTMLIRDHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKR 453

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGL----IQSDMLRTWRRLKKKLDEESI 286
                    EM +KG  P   T+  L + L    +  D  R ++++ KK  E +I
Sbjct: 454 MDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLEPTI 508



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 11/181 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ G+    R+D     L EM ++G  P+  TYN L+  +  R          K   
Sbjct: 441 YTCLLVGYGNAKRMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNR----------KMPD 490

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP-QLSLDKLNFMKEKGICPTVATYSSV 120
           +A +++ +M  +G+EP + ++++++  Y    +   +       M  +GICP V +Y+  
Sbjct: 491 DAARIYKKMIKKGLEPTIHTYNMMMKSYFLGDRNYAMGCAVWEEMHRRGICPDVNSYTVF 550

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +      GR E+A + + EM+  G+      YN F  ++      +   +L  ++K  G 
Sbjct: 551 INGHIRHGRPEEAYKYIEEMINKGMTAPQIDYNKFAADFSKAGKPDILYELALKVKFAGK 610

Query: 181 C 181
           C
Sbjct: 611 C 611



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 4/227 (1%)

Query: 38  NVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT-SFSIVLHVYSRAHQPQ 96
           + L   +C    L    RF+   R + + F      G     T ++  +LH+  +  Q +
Sbjct: 188 SALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATASGGFTHTTITYCKMLHILGKTRQFE 247

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           + +  +  M + G   ++  +   +K   + G I++A  +   M +NG     E++NC  
Sbjct: 248 MMVAIIQEMGKVGAL-SMDAFKVAIKSFAAAGEIKNAVGVFELMKKNGFDDGVESFNCLL 306

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      A +++ +M   G   P++ SY  L+  +     +     +WN++   G+
Sbjct: 307 VALANEGLGREARQVFDKMH--GQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGM 364

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            PD+  +  +I GL   Q+  EA + F  M  KG  P   T+  L R
Sbjct: 365 KPDVVVHNTMIEGLLRGQRRPEALKMFELMKAKGPPPNVWTYTMLIR 411


>gi|224123678|ref|XP_002319139.1| predicted protein [Populus trichocarpa]
 gi|222857515|gb|EEE95062.1| predicted protein [Populus trichocarpa]
          Length = 518

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 142/274 (51%), Gaps = 25/274 (9%)

Query: 2   YTSLIYGWCK-INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +  ++ GWC  I     +ER   EM +RG+  +VV+Y  +++   +  SL+   R     
Sbjct: 199 FNIVLNGWCNLIGSPRESERVWREMSKRGIRFDVVSYASMMSCYSKAGSLYRVLR----- 253

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                ++ +M+  GIEPD   ++ V+H  ++      + + +  M+EKG+ P + TY+S+
Sbjct: 254 -----LYKQMKKIGIEPDRKVYNAVIHALAKGRLVNEAFNLMKTMEEKGVAPNIVTYNSL 308

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +K LC   ++E+A+    +M++  + P+  TY+ F +  R  ++    ++  R+M     
Sbjct: 309 IKPLCRARKVEEAKGAFDDMLKRCISPTIRTYHAFLRILRTGEEVFALLEKMRKMG---- 364

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P   +Y +LI  F    +++ V ++W+++  +G+ PD  SY +LIHGL    +   A 
Sbjct: 365 CQPINDTYIMLIRKFCRWRQLENVFKLWDEMSENGISPDRSSYIVLIHGLFLNGELDAAH 424

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTW 274
           +Y+ EM EK LLP+              +ML+TW
Sbjct: 425 KYYTEMKEKQLLPEPKI----------DEMLQTW 448



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 13/180 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I+   K   ++ A   +  M E+GV PN+VTYN L+  +CR           + +
Sbjct: 269 VYNAVIHALAKGRLVNEAFNLMKTMEEKGVAPNIVTYNSLIKPLCR----------ARKV 318

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+  FD+M  R I P + ++   L +     +    L+K   M++ G  P   TY  +
Sbjct: 319 EEAKGAFDDMLKRCISPTIRTYHAFLRILRTGEEVFALLEK---MRKMGCQPINDTYIML 375

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C   ++E+  +L  EM  NG+ P   +Y           + + A K Y +MKE  L
Sbjct: 376 IRKFCRWRQLENVFKLWDEMSENGISPDRSSYIVLIHGLFLNGELDAAHKYYTEMKEKQL 435



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 98/243 (40%), Gaps = 49/243 (20%)

Query: 66  VFDEMRVRGIEPDVT-----SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + DEMR  G++  V+     +  I++  Y   H    +++     K       +  + S+
Sbjct: 111 LIDEMR--GVKTGVSLVTPQTLLIMIRKYCAVHDVGRAINTFYAYKRFKFDMGIEEFQSL 168

Query: 121 VKCLCSCGRIEDAEELL-----------------------------------GEMVRNGV 145
           +  LC    ++DAE+L+                                    EM + G+
Sbjct: 169 LSALCRYKNVQDAEQLMYCNKAVFPLNTKSFNIVLNGWCNLIGSPRESERVWREMSKRGI 228

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
                +Y      Y         ++LY+QMK+ G+  P+   YN +I    AL +  +V 
Sbjct: 229 RFDVVSYASMMSCYSKAGSLYRVLRLYKQMKKIGI-EPDRKVYNAVIH---ALAKGRLVN 284

Query: 206 EIWNDVKG---SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
           E +N +K     G+ P++ +Y  LI  LC  +K +EA   F +M+++ + P   T+    
Sbjct: 285 EAFNLMKTMEEKGVAPNIVTYNSLIKPLCRARKVEEAKGAFDDMLKRCISPTIRTYHAFL 344

Query: 263 RGL 265
           R L
Sbjct: 345 RIL 347


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 147/306 (48%), Gaps = 36/306 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRAS------------ 49
           +T+L+ G C+  R+  A   L  M+E G++PN +TY  +++G+C+               
Sbjct: 84  FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKME 143

Query: 50  ----LHPSERFEKTI----------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
               + P       I           +A+ +F EM+ +GI PD+ ++S +++ +  + + 
Sbjct: 144 ELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKW 203

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +   L  M  + I P V T+S ++  L   G +  A++LL EM+ +GVCP+  T N  
Sbjct: 204 SEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTL 263

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCV----------PNMHSYNILIGMFMALNRMDMVR 205
                       A+++++ M++  + +          P++ +YNILI   +   +     
Sbjct: 264 LDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAE 323

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           E++ ++   G+ PD  +Y+ +I+GLC++ +  EA Q F  M  K   P  VTF TL  G 
Sbjct: 324 ELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGY 383

Query: 266 IQSDML 271
            ++ M+
Sbjct: 384 CKAGMV 389



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 133/276 (48%), Gaps = 22/276 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+++I G  K  R   A+    EM ++G+ P++VTY+ ++NG C               
Sbjct: 154 IYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKW---------- 203

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++  EM VR I PDV +FS +++   +      + D L  M   G+CP V T +++
Sbjct: 204 SEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTL 263

Query: 121 VKCLCSCGRIEDAEELLGEMVR-----------NGVCPSAETYNCFFKEYRGRKDANGAM 169
           +  LC  G+++DA E+   M +           NGV P  +TYN              A 
Sbjct: 264 LDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAE 323

Query: 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
           +LY +M   G+ VP+  +Y+ +I      +R+D   ++++ +      P++ ++  LI G
Sbjct: 324 ELYEEMPHRGI-VPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITG 382

Query: 230 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            C+     +  + F EM  +G++   +T+ TL RG 
Sbjct: 383 YCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGF 418



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 117/246 (47%), Gaps = 2/246 (0%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ LI    K   ++ A+  L EMI  GV PNVVT N LL+G+C    L  +    K ++
Sbjct: 225 FSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQ 284

Query: 62  NAEKVFDEMRV-RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +    D      G+EPDV +++I++       +   + +    M  +GI P   TYSS+
Sbjct: 285 KSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSM 344

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   R+++A ++   M      P+  T+N     Y      +  ++L+ +M   G+
Sbjct: 345 INGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGI 404

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            V N  +Y  LI  F  +  ++   +I+ ++  SG+ PD  +   ++ GL  K++ K A 
Sbjct: 405 -VANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAL 463

Query: 241 QYFVEM 246
               E+
Sbjct: 464 AMLEEL 469



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 118/249 (47%), Gaps = 14/249 (5%)

Query: 33  NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92
           ++ ++N+L+   C  + L            A   F ++   G  P + +F+ +LH     
Sbjct: 14  DIYSFNILIKCFCSCSKL----------PFALSTFGKLTKLGFHPTLVTFNTLLHGLCVE 63

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
            +   +LD  + M +    P V T+++++  LC  GR+ +A  LL  MV +G+ P+  TY
Sbjct: 64  DRVSEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITY 119

Query: 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
                      D   A+ L R+M+E     P++  Y+ +I       R    + ++ +++
Sbjct: 120 GTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQ 179

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
             G+ PD+ +Y+ +I+G C   KW EA +   EM+ + + P  VTF  L   L++   L 
Sbjct: 180 DKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLN 239

Query: 273 TWRRLKKKL 281
           + + L +++
Sbjct: 240 SAQDLLQEM 248



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 131/285 (45%), Gaps = 20/285 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI  +C  +++  A    G++ + G  P +VT+N LL+G+C           E  + 
Sbjct: 18  FNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLC----------VEDRVS 67

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F +M     +P+V +F+ +++   R  +   ++  L+ M E G+ P   TY ++V
Sbjct: 68  EALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIV 123

Query: 122 KCLCSCGRIEDAEELLGEMVR-NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             +C  G    A  LL +M   + + P    Y+              A  L+ +M++ G+
Sbjct: 124 DGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGI 183

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +Y+ +I  F +  +    + +  ++    + PD+ +++ LI+ L ++     A 
Sbjct: 184 -FPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQ 242

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKKKL 281
               EMI  G+ P  VT  TL  GL  S    D L  ++ ++K +
Sbjct: 243 DLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSM 287



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 10/175 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G     +   AE    EM  RG+ P+ VTY+ ++NG+C+++ L           
Sbjct: 306 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLD---------- 355

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++FD M  +   P++ +F+ ++  Y +A      L+    M  +GI     TY +++
Sbjct: 356 EATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLI 415

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           +     G I  + ++  EM+ +GV P   T          +++   A+ +  +++
Sbjct: 416 RGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRALAMLEELQ 470



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 50/186 (26%)

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           + +++ ++KC CSC ++  A    G++ + G  P+  T+N            + A+ L+ 
Sbjct: 15  IYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFH 74

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           QM     C PN+ ++                                   T L++GLC +
Sbjct: 75  QM-----CKPNVVTF-----------------------------------TTLMNGLCRE 94

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQ 293
            +  EA      M+E GL P ++T+ T+  G+ +     +   L +K++E S        
Sbjct: 95  GRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELS-------- 146

Query: 294 NYHFKP 299
             H KP
Sbjct: 147 --HIKP 150


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 146/296 (49%), Gaps = 18/296 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI  +C   ++  A   L EMI + + P+V T+++L++ +C+              +
Sbjct: 188 YNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEG------------K 235

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA+++F  M   G+ P+V S++I+++   +  +   +++ L  M  K + P   TY+S++
Sbjct: 236 NAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLI 295

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GRI  A  L+ EM   G      TY          ++ + A  L+ +MKE G+ 
Sbjct: 296 DGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGI- 354

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P M++Y  LI       R+   +E++  +   G   D+ +YT++I GLC++  + EA  
Sbjct: 355 QPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALA 414

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG-SEFQNYH 296
              +M + G +P  VTFE + R L + D         +KL  E I  G   F+N+H
Sbjct: 415 IKSKMEDNGCIPNAVTFEIIIRSLFEKD----ENDKAEKLLHEMIAKGLLGFRNFH 466



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 137/280 (48%), Gaps = 13/280 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G CK      A + L  + +R   PNVV Y+ +++G+C+          +K + 
Sbjct: 118 YGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCK----------DKLVN 167

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++ EM  R I P+V +++ ++  +  A Q   +   L+ M  K I P V T+S ++
Sbjct: 168 EAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILI 227

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+  +A+++   MV+ GV P+  +YN         K  + AM L R+M    + 
Sbjct: 228 DALCKEGK--NAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNM- 284

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+  +YN LI       R+     + N++   G   D+ +YT L+  LC+ Q   +A  
Sbjct: 285 VPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATA 344

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            F++M E+G+ P   T+  L  GL +   L+  + L + L
Sbjct: 345 LFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHL 384



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 130/264 (49%), Gaps = 13/264 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C + ++  +   LG++++ G  PN +T+  L+ G+C +  +     F        
Sbjct: 51  LINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFH------- 103

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
              D++  +  + +  S+  +L+   +  + + ++  L  ++++   P V  YS+++  L
Sbjct: 104 ---DKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGL 160

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C    + +A +L  EM    + P+  TYN     +       GA  L  +M    +  P+
Sbjct: 161 CKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNI-NPD 219

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           +++++ILI       +    ++I++ +   G+ P++ SY ++I+GLC+ ++  EA     
Sbjct: 220 VYTFSILIDALCKEGK--NAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLR 277

Query: 245 EMIEKGLLPQKVTFETLYRGLIQS 268
           EM+ K ++P  VT+ +L  GL +S
Sbjct: 278 EMLHKNMVPDTVTYNSLIDGLCKS 301



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 1/157 (0%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M  KGI   + T S ++ C C  G++  +  LLG++++ G  P+  T+    K    + +
Sbjct: 36  MDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGE 95

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
               +  + ++        N  SY  L+             ++   ++     P++  Y+
Sbjct: 96  VKKLLHFHDKVVAQAF-QTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYS 154

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            +I GLC+ +   EA   + EM  + + P  +T+ TL
Sbjct: 155 AIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTL 191



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 1/118 (0%)

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
            + L +QM   G+   N+ + +ILI  F  L +M     +   +   G  P+  ++T L+
Sbjct: 29  VISLSKQMDVKGI-EQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLM 87

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
            GLC K + K+   +  +++ +     +V++ TL  GL ++   R   +L + +++ S
Sbjct: 88  KGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRS 145


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 137/263 (52%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI+G CK  +++ A      M+E G+EPNVVTY  L+ G C           E  ++
Sbjct: 250 YTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCN----------EGHLQ 299

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++   M   G+ P+  +FS+++    +  + + +   L  + +KG+      Y+S++
Sbjct: 300 CAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLI 359

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+I+ A+EL+ +M+  G  P A +Y+        +K  + A  +   M E G+ 
Sbjct: 360 DGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQ 419

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              + +Y I+I   +     +  ++I++ +  +G+ PD+ +YT+ +   CE+ + ++A  
Sbjct: 420 ASPV-TYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAES 478

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
             V+M+++G+ P  VT+ TL RG
Sbjct: 479 MIVQMVDRGVFPNLVTYNTLIRG 501



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 21/289 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI  +C    I  A++ L  ++  G+ P+   Y   + G CR   L           
Sbjct: 75  YTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGML----------T 124

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A +VF  M +RG      +++ +LH    A   + ++     M+     P    Y+++V
Sbjct: 125 HACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMV 184

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR E+AE LL E + NG  P+   YN     Y    +   A+K++  M +   C
Sbjct: 185 HGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGM-DGNRC 243

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  LI       +++    +++ +  +GL P++ +YT LI G C +   + A +
Sbjct: 244 SPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFR 303

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
               M   GL+P   TF  L   L +          ++K++E  +  GS
Sbjct: 304 LLHLMETNGLVPNDWTFSVLIDALCK----------REKVEEAQLFLGS 342



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 127/286 (44%), Gaps = 49/286 (17%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR-----ASLHPSER 55
           +YTSLI G CK  +ID A+  + +MI  G  P+  +Y+ L++G+CR+     A+L   + 
Sbjct: 354 VYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDM 413

Query: 56  FEKTIRNA--------------------EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
            EK I+ +                    +K+FD+M   GI PD+ ++++ +  Y    + 
Sbjct: 414 MEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRM 473

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + +   +  M ++G+ P + TY+++++   + G +  A      MV  G  P+ ++Y   
Sbjct: 474 EDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVL 533

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            +    +  ++ ++ +++        + +M    +L+                 D+    
Sbjct: 534 LRLVVKKSSSDNSVDIWK--------IADMKDLQVLL----------------EDITERQ 569

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           L    D Y+  I  LC   + +EA  +F+ M    L P +  + ++
Sbjct: 570 LPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSI 615



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 128/310 (41%), Gaps = 26/310 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC---------------R 46
           YTS + G+C+   +  A R    M  RG      TY  LL+G+                R
Sbjct: 110 YTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMR 169

Query: 47  RASLHPSERFEKTIRNA----------EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
             S  P      T+ +           E + +E    G EP++  ++ ++  Y  A + +
Sbjct: 170 ADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEME 229

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L     M      P V TY+ ++  LC  G++E A  L   MV  G+ P+  TY    
Sbjct: 230 HALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALI 289

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           +          A +L   M+ +GL VPN  ++++LI       +++  +     +   G+
Sbjct: 290 QGQCNEGHLQCAFRLLHLMETNGL-VPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGV 348

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
             +   YT LI GLC+  K   A +   +MI +G +P   ++ +L  GL +   L     
Sbjct: 349 KVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATL 408

Query: 277 LKKKLDEESI 286
           + + + E+ I
Sbjct: 409 MLEDMMEKGI 418


>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
 gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
          Length = 410

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 135/263 (51%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI+G+    + +M    +GEM   GVEPN+ TYN L+   CR              +
Sbjct: 76  YTALIHGYFVRGQREMGFALVGEMRRGGVEPNLYTYNCLVGEWCRTGEF----------K 125

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +FDEM ++G+  +V S++I++    R  + + +      M+ +GI P++ T++ ++
Sbjct: 126 SARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLI 185

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G++ +A     +M   G+ PS  TYN     +   +D   A++ +  MKE  L 
Sbjct: 186 DGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRL- 244

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P   +Y ILIG F   N MD   E+ ++++ +GL  D+ SY +L+H LC + K   A +
Sbjct: 245 APTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARK 304

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F  M  KG+ P  V ++ +  G
Sbjct: 305 LFQSMDSKGVKPNNVLYDMMIYG 327



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 81/155 (52%), Gaps = 10/155 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI  + K N +D A   L EM + G+E +V +Y VLL+ +C           E  + 
Sbjct: 251 YTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALC----------MEGKMM 300

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+F  M  +G++P+   + ++++ Y R      +L  +  M++ G+ P VA+Y   +
Sbjct: 301 HARKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEMRKSGLIPNVASYCLTI 360

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           + LC+ G+ ++AE L+G+M   G+  S       F
Sbjct: 361 RLLCNEGKCQEAEALIGDMEDAGLQTSESICRVLF 395


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 147/306 (48%), Gaps = 36/306 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRAS------------ 49
           +T+L+ G C+  R+  A   L  M+E G++PN +TY  +++G+C+               
Sbjct: 84  FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKME 143

Query: 50  ----LHPSERFEKTI----------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
               + P       I           +A+ +F EM+ +GI PD+ ++S +++ +  + + 
Sbjct: 144 ELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKW 203

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +   L  M  + I P V T+S ++  L   G +  A++LL EM+ +GVCP+  T N  
Sbjct: 204 SEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTL 263

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCV----------PNMHSYNILIGMFMALNRMDMVR 205
                       A+++++ M++  + +          P++ +YNILI   +   +     
Sbjct: 264 LDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAE 323

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           E++ ++   G+ PD  +Y+ +I+GLC++ +  EA Q F  M  K   P  VTF TL  G 
Sbjct: 324 ELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGY 383

Query: 266 IQSDML 271
            ++ M+
Sbjct: 384 CKAGMV 389



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 133/276 (48%), Gaps = 22/276 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+++I G  K  R   A+    EM ++G+ P++VTY+ ++NG C               
Sbjct: 154 IYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKW---------- 203

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++  EM VR I PDV +FS +++   +      + D L  M   G+CP V T +++
Sbjct: 204 SEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTL 263

Query: 121 VKCLCSCGRIEDAEELLGEMVR-----------NGVCPSAETYNCFFKEYRGRKDANGAM 169
           +  LC  G+++DA E+   M +           NGV P  +TYN              A 
Sbjct: 264 LDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAE 323

Query: 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
           +LY +M   G+ VP+  +Y+ +I      +R+D   ++++ +      P++ ++  LI G
Sbjct: 324 ELYEEMPHRGI-VPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITG 382

Query: 230 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            C+     +  + F EM  +G++   +T+ TL RG 
Sbjct: 383 YCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGF 418



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 118/246 (47%), Gaps = 2/246 (0%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ LI    K   ++ A+  L EMI  GV PNVVT N LL+G+C    L  +    K ++
Sbjct: 225 FSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQ 284

Query: 62  NAEKVFDEMRV-RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +    D      G+EPDV +++I++       +   + +    M  +GI P   TYSS+
Sbjct: 285 KSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSM 344

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   R+++A ++   M      P+  T+N     Y      +  ++L+ +M   G+
Sbjct: 345 INGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGI 404

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            V N  +Y  LI  F  +  ++   +I+ ++  SG+ PD  +   ++ GL  K++ K+A 
Sbjct: 405 -VANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKKAL 463

Query: 241 QYFVEM 246
               E+
Sbjct: 464 AMLEEL 469



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 118/249 (47%), Gaps = 14/249 (5%)

Query: 33  NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92
           ++ ++N+L+   C  + L            A   F ++   G  P + +F+ +LH     
Sbjct: 14  DIYSFNILIKCFCSCSKL----------PFALSTFGKLTKLGFHPTLVTFNTLLHGLCVE 63

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
            +   +LD  + M +    P V T+++++  LC  GR+ +A  LL  MV +G+ P+  TY
Sbjct: 64  DRVSEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITY 119

Query: 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
                      D   A+ L R+M+E     P++  Y+ +I       R    + ++ +++
Sbjct: 120 GTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQ 179

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
             G+ PD+ +Y+ +I+G C   KW EA +   EM+ + + P  VTF  L   L++   L 
Sbjct: 180 DKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLN 239

Query: 273 TWRRLKKKL 281
           + + L +++
Sbjct: 240 SAQDLLQEM 248



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 131/285 (45%), Gaps = 20/285 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI  +C  +++  A    G++ + G  P +VT+N LL+G+C           E  + 
Sbjct: 18  FNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLC----------VEDRVS 67

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F +M     +P+V +F+ +++   R  +   ++  L+ M E G+ P   TY ++V
Sbjct: 68  EALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIV 123

Query: 122 KCLCSCGRIEDAEELLGEMVR-NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             +C  G    A  LL +M   + + P    Y+              A  L+ +M++ G+
Sbjct: 124 DGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGI 183

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +Y+ +I  F +  +    + +  ++    + PD+ +++ LI+ L ++     A 
Sbjct: 184 -FPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQ 242

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKKKL 281
               EMI  G+ P  VT  TL  GL  S    D L  ++ ++K +
Sbjct: 243 DLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSM 287



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 10/175 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G     +   AE    EM  RG+ P+ VTY+ ++NG+C+++ L           
Sbjct: 306 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLD---------- 355

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++FD M  +   P++ +F+ ++  Y +A      L+    M  +GI     TY +++
Sbjct: 356 EATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLI 415

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           +     G I  + ++  EM+ +GV P   T          +++   A+ +  +++
Sbjct: 416 RGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAMLEELQ 470



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 50/186 (26%)

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           + +++ ++KC CSC ++  A    G++ + G  P+  T+N            + A+ L+ 
Sbjct: 15  IYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFH 74

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           QM     C PN+ ++                                   T L++GLC +
Sbjct: 75  QM-----CKPNVVTF-----------------------------------TTLMNGLCRE 94

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQ 293
            +  EA      M+E GL P ++T+ T+  G+ +     +   L +K++E S        
Sbjct: 95  GRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELS-------- 146

Query: 294 NYHFKP 299
             H KP
Sbjct: 147 --HIKP 150


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 136/264 (51%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G+CKI  +  A     EM+  G+ PNVVT+ +L++G+C+   +           
Sbjct: 266 YNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEM----------V 315

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K   +M   G+ P++  ++ ++  Y +A     +L   + +++  I P V TYS ++
Sbjct: 316 SARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILI 375

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC   R+E+A+ LL EM + G  P+A TYN     Y    +   A+++  QM E G+ 
Sbjct: 376 KGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGI- 434

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +++ LI  +    +M+    ++ ++   GL PD+ +YT LI G  +    KEA +
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFR 494

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
              EM E GL P   T   L  GL
Sbjct: 495 LHKEMQEAGLHPNVFTLSCLIDGL 518



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 132/263 (50%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G C+      A R   EMIE+ + P VV Y +L+ G+C           E  I 
Sbjct: 196 YGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCG----------ESRIS 245

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE +F  MR  G+ P++ +++ ++  Y +    + +L+    M   G+ P V T+  ++
Sbjct: 246 EAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILI 305

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    +  A + L +M   GV P+   YNC    Y    + + A+ L+ ++++  + 
Sbjct: 306 DGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEI- 364

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y+ILI     ++RM+    +  ++K  G  P+  +Y  LI G C++   ++A +
Sbjct: 365 LPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIE 424

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
              +M EKG+ P  +TF TL  G
Sbjct: 425 VCSQMTEKGIEPNIITFSTLIDG 447



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 137/286 (47%), Gaps = 11/286 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G C  +RI  AE     M   G+ PN+ TYN +++G C+ A           +
Sbjct: 230 IYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAH----------V 279

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A +++ EM   G+ P+V +F I++    +  +   +   L  M   G+ P +  Y+ +
Sbjct: 280 KKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCL 339

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G + +A  L  E+ ++ + P   TY+   K   G      A  L ++MK+ G 
Sbjct: 340 IDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGF 399

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +PN  +YN LI  +     M+   E+ + +   G+ P++ +++ LI G C+  K + A 
Sbjct: 400 -LPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAM 458

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             + EM+ KGLLP  V +  L  G  +    +   RL K++ E  +
Sbjct: 459 GLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGL 504



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 136/284 (47%), Gaps = 22/284 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G C ++R++ A+  L EM ++G  PN VTYN L++G C+  ++      EK I 
Sbjct: 371 YSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNM------EKAI- 423

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +V  +M  +GIEP++ +FS ++  Y +A + + ++     M  KG+ P V  Y++++
Sbjct: 424 ---EVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALI 480

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK----- 176
                 G  ++A  L  EM   G+ P+  T +C           + A+KL+         
Sbjct: 481 DGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTT 540

Query: 177 -------EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
                  +  LC PN   Y  LI       R+    + ++D++ SGL PD+ +  ++I G
Sbjct: 541 GSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQG 600

Query: 230 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT 273
                  ++      ++++ G++P    +  L +G  +S  L++
Sbjct: 601 HFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKS 644



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 123/271 (45%), Gaps = 16/271 (5%)

Query: 30  VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89
           V P +   N++L+G+ ++       RF+       KV+ +M  RG  P+V ++  ++   
Sbjct: 154 VLPAMQACNMVLDGLVKKG------RFD----TMWKVYGDMVARGASPNVVTYGTLIDGC 203

Query: 90  SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
            R      +    + M EK I PTV  Y+ +++ LC   RI +AE +   M  +G+ P+ 
Sbjct: 204 CRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNL 263

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
            TYN     Y        A++LY +M  DGL +PN+ ++ ILI      + M   R+   
Sbjct: 264 YTYNTMMDGYCKIAHVKKALELYXEMLGDGL-LPNVVTFGILIDGLCKTDEMVSARKFLI 322

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           D+   G+ P++  Y  LI G C+     EA     E+ +  +LP   T+  L +GL   D
Sbjct: 323 DMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVD 382

Query: 270 MLRTWRRL-----KKKLDEESITFGSEFQNY 295
            +     L     KK     ++T+ +    Y
Sbjct: 383 RMEEADGLLQEMKKKGFLPNAVTYNTLIDGY 413


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 143/282 (50%), Gaps = 14/282 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+ K    D A     EM++RG+ P+VVTYN ++  +C+           + + 
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCK----------AQAMD 248

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V + M   G+ PD  +++ +LH Y  + QP+ ++  L  M+  G+ P V TYS ++
Sbjct: 249 KAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLM 308

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A ++   M + G+ P   TY    + Y  +        L   M  +G+ 
Sbjct: 309 DYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 368

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ + ++ILI  +    ++D    +++ ++  GL P+  +Y  +I  LC+  + ++A  
Sbjct: 369 -PDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAML 427

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           YF +MI++GL P  + + +L  GL   +    W R ++ + E
Sbjct: 428 YFEQMIDEGLSPGNIVYNSLIHGLCTCN---KWERAEELILE 466



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 139/295 (47%), Gaps = 14/295 (4%)

Query: 2   YTSLIYGWCKINRI-DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +T L+ G C   R  D  +  L  M E G  PNV +YN+LL G+C         R ++ +
Sbjct: 125 FTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLC------DENRSQEAL 178

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                + D+ R  G  PDV S++ V++ + +      +    + M ++GI P V TY+S+
Sbjct: 179 ELLHMMADD-RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSI 237

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC    ++ A E+L  MV+NGV P   TYN     Y        A+   ++M+ DG+
Sbjct: 238 IAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGV 297

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +Y++L+       R    R+I++ +   GL P++ +Y  L+ G   K    E  
Sbjct: 298 -EPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 356

Query: 241 QYFVEMIEKGLLPQKVTFETLY-----RGLIQSDMLRTWRRLKKKLDEESITFGS 290
                M+  G+ P    F  L      +G +   ML   +  ++ L+  ++T+G+
Sbjct: 357 GLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGA 411



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 146/321 (45%), Gaps = 28/321 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           Y+ L+   CK  R   A +    M +RG++P + TY  LL G   + +L           
Sbjct: 304 YSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 363

Query: 51  ----HPSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
               HP              +  +  A  VF +MR +G+ P+  ++  V+ +  ++ + +
Sbjct: 364 RNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVE 423

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++     M ++G+ P    Y+S++  LC+C + E AEEL+ EM+  G+C +   +N   
Sbjct: 424 DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII 483

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +        + KL+  M   G+  PN+ +YN LI  +    +MD   ++ + +   GL
Sbjct: 484 DSHCKEGRVIESEKLFELMVRIGV-KPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGL 542

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  +Y+ LI+G C+  + ++A   F EM   G+ P  +T+  + +GL Q+      + 
Sbjct: 543 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 602

Query: 277 LKKKLDEESITFGSEFQNYHF 297
           L  ++ E       E   Y+ 
Sbjct: 603 LYVRITESGTQI--ELSTYNI 621



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 143/281 (50%), Gaps = 15/281 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +++ LI  + K  ++D A     +M ++G+ PN VTY  ++  +C+      S R E  +
Sbjct: 373 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCK------SGRVEDAM 426

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              E++ DE    G+ P    ++ ++H     ++ + + + +  M ++GIC     ++S+
Sbjct: 427 LYFEQMIDE----GLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSI 482

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  GR+ ++E+L   MVR GV P+  TYN     Y      + AMKL   M   GL
Sbjct: 483 IDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGL 542

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  +Y+ LI  +  ++RM+    ++ +++ SG+ PD+ +Y +++ GL + ++   A 
Sbjct: 543 -KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 601

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL----IQSDMLRTWRRL 277
           + +V + E G   +  T+  +  GL    +  D L+ ++ L
Sbjct: 602 ELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNL 642



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 142/295 (48%), Gaps = 11/295 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SLI+G C  N+ + AE  + EM++RG+  N + +N +++  C+          E  +
Sbjct: 443 VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCK----------EGRV 492

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             +EK+F+ M   G++P+V +++ +++ Y  A +   ++  L+ M   G+ P   TYS++
Sbjct: 493 IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C   R+EDA  L  EM  +GV P   TYN   +     +    A +LY ++ E G 
Sbjct: 553 INGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGT 612

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +  + +YNI++         D   +++ ++    L  +  ++ ++I  L +  +  EA 
Sbjct: 613 QI-ELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAK 671

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
             FV     GL+P   T+  +   +I   +L    +L   +++   T  S   N+
Sbjct: 672 DLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNF 726



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 128/282 (45%), Gaps = 28/282 (9%)

Query: 30  VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89
           V P++ TY +L+   CR   L   +     + N  K       +G   D  +F+ +L   
Sbjct: 83  VTPDLCTYGILIGCCCRAGRL---DLGFAALGNVIK-------KGFRVDAIAFTPLLKGL 132

Query: 90  SRAHQPQLSLD-KLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN---GV 145
               +   ++D  L  M E G  P V +Y+ ++K LC   R ++A ELL  M  +   G 
Sbjct: 133 CADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGS 192

Query: 146 CPSAETY----NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
            P   +Y    N FFKE     D++ A   Y +M + G+ +P++ +YN +I        M
Sbjct: 193 PPDVVSYTTVINGFFKE----GDSDKAYSTYHEMLDRGI-LPDVVTYNSIIAALCKAQAM 247

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           D   E+ N +  +G+ PD  +Y  ++HG C   + KEA  +  +M   G+ P  VT+  L
Sbjct: 248 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLL 307

Query: 262 YRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNYHFK 298
              L ++      R++     K+ L  E  T+G+  Q Y  K
Sbjct: 308 MDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATK 349



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 106/217 (48%), Gaps = 9/217 (4%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG---ICPTVATYS 118
           +A  VFDE+  RG    +   +  L   +R   P  ++ + N M   G   + P + TY 
Sbjct: 33  DARHVFDELLRRGRGASIYGLNRALADVAR-DSPAAAVSRYNRMARAGADEVTPDLCTYG 91

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL-YRQMKE 177
            ++ C C  GR++     LG +++ G    A  +    K     K  + AM +  R+M E
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWN---DVKGSGLGPDLDSYTMLIHGLCEKQ 234
            G C+PN+ SYNIL+      NR     E+ +   D +G G  PD+ SYT +I+G  ++ 
Sbjct: 152 LG-CIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEG 210

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              +A   + EM+++G+LP  VT+ ++   L ++  +
Sbjct: 211 DSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAM 247



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 82/192 (42%), Gaps = 25/192 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR-RASLHPSERF---- 56
           Y++LI G+CKI+R++ A     EM   GV P+++TYN++L G+ + R +    E +    
Sbjct: 549 YSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRIT 608

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                K   +A ++F  + +  ++ +  +F+I++    +  +  
Sbjct: 609 ESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRND 668

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + D        G+ P   TY  + + +   G +E+ ++L   M  NG    +   N   
Sbjct: 669 EAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIV 728

Query: 157 KEYRGRKDANGA 168
           +E   R +   A
Sbjct: 729 RELLQRGEITRA 740


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 147/286 (51%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI   CK  ++  A++ LG MIE G+ P++VTYN L+ G C    L+          
Sbjct: 263 FNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLN---------- 312

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F  M  +G EPDV S++++++ YS+  + + ++   N M   G  P V TY S++
Sbjct: 313 SARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLL 372

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K +   G+++DA++L   M  +G+  ++ TY  F            AMKL+ ++K     
Sbjct: 373 KGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFK 432

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +  + + N LI       +++   E++  +   G  P++ +YT++IHG C + +  +A  
Sbjct: 433 L-EIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANV 491

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              +M   G  P  +T+ TL RG  +S+ L    +L  ++ ++ ++
Sbjct: 492 LIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVS 537



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 145/290 (50%), Gaps = 9/290 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMI------ERGVEPNVVTYNVLLNGVCRRASLHPSER 55
           Y +LI G C    I++A +   EM+      E   +PNV+TYN++++G+C+      +++
Sbjct: 177 YGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQ 236

Query: 56  FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA 115
             + ++    + +EM  +G++PD+ +F++++    +  +   +   L  M E GI P + 
Sbjct: 237 LFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLV 296

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           TY+S+++  C  G +  A EL   M   G  P   +YN     Y        AMKLY +M
Sbjct: 297 TYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEM 356

Query: 176 KEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
              G   PN+ +Y+ L+ G+F+A  ++D  +++++ +K  G+  +  +Y + + GLC+  
Sbjct: 357 LLVGK-RPNVITYDSLLKGIFLA-GKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKND 414

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
              EA + F E+       +      L  GL ++  L T   L +KL  E
Sbjct: 415 CLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNE 464



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 132/275 (48%), Gaps = 25/275 (9%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A  F   M+     P++ ++N LL+G+ +    H S+ F         ++++MR+ G+  
Sbjct: 53  ALHFFHLMMRSTPTPSLSSFNHLLSGLAKIK--HYSQVFS--------LYNQMRLSGLSS 102

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           D  + +I+L+     ++ +        +  +G  P + TY++++K LC   RI +A  L 
Sbjct: 103 DRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLF 162

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL-----CVPNMHSYNILI 192
             M + G  P   TY    K   G  + N A+KL+++M  D       C PN+ +YNI++
Sbjct: 163 LRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIV 222

Query: 193 GMFMALNRMDMVREIWNDVK----------GSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
                + R D  ++++ ++K            GL PD+ ++ +LI  LC++ K  EA + 
Sbjct: 223 DGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKL 282

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
              MIE G++P  VT+ +L  G      L + R L
Sbjct: 283 LGVMIESGIVPDLVTYNSLIEGFCMVGDLNSAREL 317



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 126/288 (43%), Gaps = 51/288 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G+C +  ++ A      M  +G EP+V++YNVL+NG            + KT++
Sbjct: 298 YNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLING------------YSKTLK 345

Query: 62  --NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY-- 117
              A K+++EM + G  P+V ++  +L     A +   +    + MK  GI     TY  
Sbjct: 346 VEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGI 405

Query: 118 ---------------------------------SSVVKCLCSCGRIEDAEELLGEMVRNG 144
                                            + ++  LC  G++E A EL  ++   G
Sbjct: 406 FLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEG 465

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
             P+  TY      +      + A  L ++M+ +G C P++ +YN L+  F   N+++ V
Sbjct: 466 HEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANG-CTPDIITYNTLMRGFYESNKLEEV 524

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM-IEKGL 251
            ++ + +    + PD  + ++++  L + +K++E         I+KG+
Sbjct: 525 VQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLLPRFPIQKGV 572



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 8/151 (5%)

Query: 147 PSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           PS      FF  +   G   A  A+  +  M       P++ S+N L+     +     V
Sbjct: 30  PSPNPQIAFFLRHCKTGNVTATHALHFFHLMMRST-PTPSLSSFNHLLSGLAKIKHYSQV 88

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             ++N ++ SGL  D  +  +L++ LC   + +E    F  ++ +G  P  VT+ TL +G
Sbjct: 89  FSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKG 148

Query: 265 LIQ----SDMLRTWRRLKK-KLDEESITFGS 290
           L      S+  R + R++K     + +T+G+
Sbjct: 149 LCMEHRISEATRLFLRMQKLGCTPDVVTYGT 179


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 144/289 (49%), Gaps = 26/289 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV----CRRASLHPSERF 56
           +YT+LI G CK   + +A+    +M   G+ PN  TY+VL+NG      +R      E  
Sbjct: 195 IYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENM 254

Query: 57  EKT---------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           +++                     +  A KVF EMR +GI   V +++I++    R  + 
Sbjct: 255 KRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKF 314

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             ++  ++ + + G+ P + TY+ ++   C  G+++ A  L  ++  +G+ P+  TYN  
Sbjct: 315 GEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTL 374

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y   ++  GA+ L ++M+E  +  P+  +Y ILI  F  LN  +   E+ + ++ SG
Sbjct: 375 IAGYSKVENLAGALDLVKEMEERCI-APSKVTYTILIDAFARLNYTEKACEMHSLMEKSG 433

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           L PD+ +Y++LIHGLC     KEA + F  + E  L P  V + T+  G
Sbjct: 434 LVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHG 482



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 126/262 (48%), Gaps = 11/262 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G C+  +   A + + ++ + G+ PN+VTYN+L+NG C    +           
Sbjct: 301 YNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKM----------D 350

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F++++  G+ P + +++ ++  YS+      +LD +  M+E+ I P+  TY+ ++
Sbjct: 351 TAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILI 410

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                    E A E+   M ++G+ P   TY+          +   A KL++ + E  L 
Sbjct: 411 DAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHL- 469

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN   YN +I  +           + N++  SG+ P++ S+   I  LC  +KWKEA  
Sbjct: 470 QPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAEL 529

Query: 242 YFVEMIEKGLLPQKVTFETLYR 263
              +MI  GL P    ++ +++
Sbjct: 530 LLGQMINSGLKPSVSLYKMVHK 551



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 138/291 (47%), Gaps = 20/291 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +++  +   +  D A  FL  MI  G  P   T+N L+  + R      S  F+K  
Sbjct: 91  LYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIR------SNYFDK-- 142

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F+E++ + +  D  SF I++     A         L  ++E G+ P V  Y+++
Sbjct: 143 --AWWIFNELKSK-VVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTL 199

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY----NCFFKEYRGRKDANGAMKLYRQMK 176
           +   C  G +  A+ L  +M R G+ P+  TY    N FFK+   R+      ++Y  MK
Sbjct: 200 IDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQRE----GFQMYENMK 255

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G+ VPN ++YN LI  +     +D   +++ +++  G+   + +Y +LI GLC  +K+
Sbjct: 256 RSGI-VPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKF 314

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            EA +   ++ + GL P  VT+  L  G      + T  RL  +L    ++
Sbjct: 315 GEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLS 365



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I+G+CK      A R L EM+  G+ PNV ++   +  +CR          ++  
Sbjct: 475 IYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCR----------DEKW 524

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIV 85
           + AE +  +M   G++P V+ + +V
Sbjct: 525 KEAELLLGQMINSGLKPSVSLYKMV 549


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 139/281 (49%), Gaps = 13/281 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G C   R D  E  + EM+  G  PNV T+N L+  +CR         FE+   
Sbjct: 216 YNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNG------LFEQV-- 267

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +   +M   G  PD+  ++ ++    +    +++ D L+ M   G+ P V  Y++V+
Sbjct: 268 --HEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVL 325

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAE-TYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           K LCS  R E+AE+LL EM +   CP  + T+N     +      +  ++L  QM E G 
Sbjct: 326 KGLCSAERWEEAEDLLAEMFQED-CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHG- 383

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C+P++ +Y  +I  F     +D    +  ++   G  P+  SYT+++ GLC  ++W +A 
Sbjct: 384 CIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQ 443

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +    MI++G LP  VTF TL   + +  ++     L K++
Sbjct: 444 ELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQM 484



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 131/280 (46%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+  +C+   +D     L +M+E G  P+V+TY  ++NG C+          E  + 
Sbjct: 356 FNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCK----------EGLVD 405

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M   G +P+  S++IVL    RA +   + + ++ M ++G  P   T+++++
Sbjct: 406 EAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLI 465

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G +E A ELL +M+ NG  P   +Y+              A++L   M   G+ 
Sbjct: 466 NFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGI- 524

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN   Y+ +        R D + ++++ ++ + +  D   Y  +I  LC++ +   A  
Sbjct: 525 TPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAID 584

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +F  M+  G +P + T+  L RGL    ++R  + L  +L
Sbjct: 585 FFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLSEL 624



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 126/265 (47%), Gaps = 11/265 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++I G CK    ++A   L  M   G++PNVV YN +L G+C       +ER+E+  
Sbjct: 285 MYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCS------AERWEE-- 336

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE +  EM       D  +F+I++  + +       ++ L  M E G  P V TY++V
Sbjct: 337 --AEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTV 394

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G +++A  LL  M   G  P+  +Y    K     +    A +L   M + G 
Sbjct: 395 INGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQG- 453

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C+PN  ++N LI        ++   E+   +  +G  PDL SY+ +I GL +  K +EA 
Sbjct: 454 CLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 513

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
           +    MI KG+ P  + + ++   L
Sbjct: 514 ELLNVMINKGITPNTIIYSSMASAL 538



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 128/321 (39%), Gaps = 50/321 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+C+  ++  A R    +    V PN  TY  ++  +C R            I 
Sbjct: 79  YNAMIAGYCRAGQVAAARRLAAAV---PVPPNAYTYFPIVRSLCARG----------LIA 125

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG------------ 109
           +A  V DEM +RG         ++L    R    + ++  L  +  KG            
Sbjct: 126 DALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVV 185

Query: 110 --IC---------------------PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
             IC                     P + +Y++V+K LC   R +D EEL+ EMVR G  
Sbjct: 186 SAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCP 245

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+  T+N                +   QM E G C P++  Y  +I         ++  +
Sbjct: 246 PNVATFNTLIAYLCRNGLFEQVHEALSQMPEHG-CTPDLRMYATIIDGICKDGHHEVAND 304

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           I + +   GL P++  Y  ++ GLC  ++W+EA     EM ++      VTF  L     
Sbjct: 305 ILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFC 364

Query: 267 QSDML-RTWRRLKKKLDEESI 286
           Q+ ++ R    L++ L+   I
Sbjct: 365 QNGLVDRVIELLEQMLEHGCI 385



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 117/248 (47%), Gaps = 11/248 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+CK   +D A   L  M   G +PN ++Y ++L G+CR      +ER+     
Sbjct: 391 YTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCR------AERW----V 440

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A+++   M  +G  P+  +F+ +++   +    + +++ L  M   G  P + +YS+V+
Sbjct: 441 DAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 500

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G+ E+A ELL  M+  G+ P+   Y+            +  ++++  + +D   
Sbjct: 501 DGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSI-QDATV 559

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +   YN +I         D   + +  +  +G  P+  +YT+LI GL  +   +EA  
Sbjct: 560 RSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQD 619

Query: 242 YFVEMIEK 249
              E+  +
Sbjct: 620 LLSELCSR 627



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 96/241 (39%), Gaps = 10/241 (4%)

Query: 53  SERFEKTIRN---AEKVFDEMRV---RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMK 106
           S R    IR+   A +  D  R     G    V +++ ++  Y RA Q   +      + 
Sbjct: 44  SGRLSALIRSLCAAGRTADAARALDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAVP 103

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
              + P   TY  +V+ LC+ G I DA  +L EM   G   +    +   +         
Sbjct: 104 ---VPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFR 160

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            A++  + +   G C  +  + N+++        +D   E+   +   G  PD+ SY  +
Sbjct: 161 SAVRALQVLHAKG-CTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAV 219

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           + GLC  ++W +  +  VEM+  G  P   TF TL   L ++ +         ++ E   
Sbjct: 220 LKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGC 279

Query: 287 T 287
           T
Sbjct: 280 T 280


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 138/278 (49%), Gaps = 11/278 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+C    +D  +    EM+ +G+  NVVTY+ L++G+CR              
Sbjct: 251 LYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQW---------- 300

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  V + M   GI PDV +++ ++    +  +   ++D LN M EKG  P+  TY+ +
Sbjct: 301 KEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVL 360

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G + DA ++L  M+  G      TYN   K    +   + A+KL+  M ++  
Sbjct: 361 LSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNEN 420

Query: 181 CV-PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           C+ PN+ ++N+LIG      R+    +I   +   G   +L +Y ML+ G  +  K KEA
Sbjct: 421 CLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEA 480

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            + + ++++ G +P   T+  L  G  +  ML   + L
Sbjct: 481 MELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGL 518



 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 149/296 (50%), Gaps = 18/296 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G CK  R   A   L  M+E+G EP+ VTYNVLL+G+C+          E  + 
Sbjct: 322 YTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCK----------EGLVI 371

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC--PTVATYSS 119
           +A K+   M  +G + DV +++ ++       +   +L   N M +   C  P V T++ 
Sbjct: 372 DAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNM 431

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC  GR+  A ++  +MV+ G C +  TYN              AM+L++Q+ + G
Sbjct: 432 LIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLG 491

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
             VPN  +Y+ILI  F  +  +++ + ++ +++  GL P L  Y  L+  LC++   ++A
Sbjct: 492 F-VPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQA 550

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE-----ESITFGS 290
              F EM      P  ++F T+  G +++   +  + L+ K+ E     +++TF +
Sbjct: 551 KSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFST 606



 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 129/290 (44%), Gaps = 21/290 (7%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++ G C+   +  A   + EM  + V P++V+YN L+NG+C+           K ++ A 
Sbjct: 150 VLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCK----------AKKLKEAV 199

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +  EM   G  P+  + + ++    +  +   +++ L  MK+KG    V  Y +++   
Sbjct: 200 GLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGF 259

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C+ G ++  +EL  EM+  G+  +  TY+C             A  +   M E G+  P+
Sbjct: 260 CNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGI-HPD 318

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y  LI       R     ++ N +   G  P   +Y +L+ GLC++    +A +   
Sbjct: 319 VVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILR 378

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
            MIEKG     VT+ TL +GL            K K+DE    F S F N
Sbjct: 379 MMIEKGKKADVVTYNTLMKGLCD----------KGKVDEALKLFNSMFDN 418



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 126/269 (46%), Gaps = 11/269 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           ++LI  +    +  +    +G +++RG   NV   N++L G+CR   +     FE     
Sbjct: 113 SALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGV-----FE----- 162

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  +  EM  + + PD+ S++ +++   +A + + ++  L  M+  G  P   T ++++ 
Sbjct: 163 AMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMD 222

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  GR+++A ELL  M + G       Y      +    + +   +L+ +M   G+  
Sbjct: 223 GLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISA 282

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
            N+ +Y+ L+     L +      + N +   G+ PD+ +YT LI GLC+  +   A   
Sbjct: 283 -NVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDL 341

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              M+EKG  P  VT+  L  GL +  ++
Sbjct: 342 LNLMVEKGEEPSNVTYNVLLSGLCKEGLV 370



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 10/227 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G+CK+  +++A+    EM   G+ P +  YN L+  +C+  SL           
Sbjct: 499 YSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSL----------E 548

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F EM     EPD+ SF+ ++    +A   Q   +    M E G+ P   T+S+++
Sbjct: 549 QAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLI 608

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G +++A+  L  MV +G  P A  Y+   K    + D    + L  QM   G  
Sbjct: 609 NRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTV 668

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228
           +       IL  +  ++  +D++  +    +G+  G  +    +L+ 
Sbjct: 669 LDRKIVSTILTCLCHSIQEVDVMELLPTFFQGTSEGASISCNELLMQ 715



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 98/238 (41%), Gaps = 36/238 (15%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  V+  M    + P   S S ++  ++ A +PQL    +  + ++G    V   + V+K
Sbjct: 93  AFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLK 152

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  G + +A  L+ EM R  V P   +YN         K    A+ L  +M+  G C 
Sbjct: 153 GLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAG-CF 211

Query: 183 PNMHS-----------------------------------YNILIGMFMALNRMDMVREI 207
           PN  +                                   Y  LI  F     +D  +E+
Sbjct: 212 PNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKEL 271

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           ++++ G G+  ++ +Y+ L+HGLC   +WKEA      M E G+ P  VT+  L  GL
Sbjct: 272 FDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGL 329


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 138/278 (49%), Gaps = 11/278 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+C    +D  +    EM+ +G+  NVVTY+ L++G+CR              
Sbjct: 105 LYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQW---------- 154

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  V + M   GI PDV +++ ++    +  +   ++D LN M EKG  P+  TY+ +
Sbjct: 155 KEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVL 214

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G + DA ++L  M+  G      TYN   K    +   + A+KL+  M ++  
Sbjct: 215 LSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNEN 274

Query: 181 CV-PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           C+ PN+ ++N+LIG      R+    +I   +   G   +L +Y ML+ G  +  K KEA
Sbjct: 275 CLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEA 334

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            + + ++++ G +P   T+  L  G  +  ML   + L
Sbjct: 335 MELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGL 372



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 149/296 (50%), Gaps = 18/296 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G CK  R   A   L  M+E+G EP+ VTYNVLL+G+C+          E  + 
Sbjct: 176 YTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCK----------EGLVI 225

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC--PTVATYSS 119
           +A K+   M  +G + DV +++ ++       +   +L   N M +   C  P V T++ 
Sbjct: 226 DAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNM 285

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC  GR+  A ++  +MV+ G C +  TYN              AM+L++Q+ + G
Sbjct: 286 LIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLG 345

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
             VPN  +Y+ILI  F  +  +++ + ++ +++  GL P L  Y  L+  LC++   ++A
Sbjct: 346 F-VPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQA 404

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE-----ESITFGS 290
              F EM      P  ++F T+  G +++   +  + L+ K+ E     +++TF +
Sbjct: 405 KSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFST 460



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 140/281 (49%), Gaps = 13/281 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T+L+ G CK  R+D A   L  M ++G + +VV Y  L++G C   +L            
Sbjct: 72  TTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLD----------R 121

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
            +++FDEM  +GI  +V ++S ++H   R  Q + +   LN M E GI P V TY+ ++ 
Sbjct: 122 GKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLID 181

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  GR   A +LL  MV  G  PS  TYN              A K+ R M E G   
Sbjct: 182 GLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGK-K 240

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDV--KGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            ++ +YN L+       ++D   +++N +    + L P++ ++ MLI GLC++ +  +A 
Sbjct: 241 ADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAV 300

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +   +M++KG     VT+  L  G +++  ++    L K++
Sbjct: 301 KIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQV 341



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 129/290 (44%), Gaps = 21/290 (7%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++ G C+   +  A   + EM  + V P++V+YN L+NG+C+           K ++ A 
Sbjct: 4   VLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCK----------AKKLKEAV 53

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +  EM   G  P+  + + ++    +  +   +++ L  MK+KG    V  Y +++   
Sbjct: 54  GLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGF 113

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C+ G ++  +EL  EM+  G+  +  TY+C             A  +   M E G+  P+
Sbjct: 114 CNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGI-HPD 172

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y  LI       R     ++ N +   G  P   +Y +L+ GLC++    +A +   
Sbjct: 173 VVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILR 232

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
            MIEKG     VT+ TL +GL            K K+DE    F S F N
Sbjct: 233 MMIEKGKKADVVTYNTLMKGLCD----------KGKVDEALKLFNSMFDN 272



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 10/227 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G+CK+  +++A+    EM   G+ P +  YN L+  +C+  SL           
Sbjct: 353 YSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSL----------E 402

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F EM     EPD+ SF+ ++    +A   Q   +    M E G+ P   T+S+++
Sbjct: 403 QAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLI 462

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G +++A+  L  MV +G  P A  Y+   K    + D    + L  QM   G  
Sbjct: 463 NRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTV 522

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228
           +       IL  +  ++  +D++  +    +G+  G  +    +L+ 
Sbjct: 523 LDRKIVSTILTCLCHSIQEVDVMELLPTFFQGTSEGASISCNELLMQ 569


>gi|297843042|ref|XP_002889402.1| hypothetical protein ARALYDRAFT_470202 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335244|gb|EFH65661.1| hypothetical protein ARALYDRAFT_470202 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 490

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 128/237 (54%), Gaps = 11/237 (4%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M  +G++P+VVTYN L++  C+          ++ I  A K+ D+MR     PDV +++ 
Sbjct: 236 MKGKGLKPDVVTYNSLIDVYCK----------DREIEKAYKLIDKMREEDETPDVITYTT 285

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           ++       QP  + + L  MKE G  P VA Y++ ++  C   R+ DA++L+ EMV+ G
Sbjct: 286 IIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNYCIARRLGDADKLVDEMVKKG 345

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           + P+A TYN FF+      D   + +LY +M  +G C+PN  S   LI MF    ++DM 
Sbjct: 346 LSPNATTYNLFFRVLSLANDLGRSWELYERMLGNG-CLPNTQSCMFLIKMFKRHEKVDMA 404

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
             +W D+   G G       +L+  LC+  K +EA +  +EM+EKG  P  V+F+ +
Sbjct: 405 MRLWEDMVVKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRI 461



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+ P   TYN     Y   ++   A KL  +M+E+    P++ +Y  +IG    + + D 
Sbjct: 240 GLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEDE-TPDVITYTTIIGGLGLIGQPDK 298

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            RE+  ++K  G  PD+ +Y   I   C  ++  +A +   EM++KGL P   T+   +R
Sbjct: 299 AREVLKEMKEYGCYPDVAAYNAAIRNYCIARRLGDADKLVDEMVKKGLSPNATTYNLFFR 358

Query: 264 GL-IQSDMLRTW 274
            L + +D+ R+W
Sbjct: 359 VLSLANDLGRSW 370


>gi|224068054|ref|XP_002302657.1| predicted protein [Populus trichocarpa]
 gi|222844383|gb|EEE81930.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 153/308 (49%), Gaps = 22/308 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T L+YGWCK  ++  A+  L +M E G EP++V YN LL+G      +           
Sbjct: 223 FTCLLYGWCKEGKLLEAKHVLVQMREAGFEPDIVVYNNLLSGYATAGKMG---------- 272

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  E+R +G +P+ TS++I++       +   ++     M+  G    V TY+++V
Sbjct: 273 DAFDLLKEIRRKGCDPNATSYTILIQALCGQEKMDEAMRVFVEMERSGCDADVVTYTALV 332

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    I+   ++L  M++ G  P+  TY      +  +++     +L  +M++ G C
Sbjct: 333 SGFCKWRMIDKGYQILQSMIQKGHMPNQLTYLHLMLAHEKKEELEECKELMGEMQKIG-C 391

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++  YN++I +   L  ++   + WN+++ SGL P LD++ ++I+G        EACQ
Sbjct: 392 IPDLSIYNVVIRLACKLGEVNAGVDAWNEMEVSGLSPGLDTFVIMINGFLGHGYLVEACQ 451

Query: 242 YFVEMIEKGLLP--QKVTFETLYRGLIQSDMLRTWRRL---------KKKLDEESITFGS 290
           YF EM+E+GLL   Q    + L   L++ + L   + L         +  +D  +I   +
Sbjct: 452 YFKEMVERGLLSSRQYGILKDLLNALLRGEKLELAKDLWSCIVTKGCELNVDSWTIWIHA 511

Query: 291 EFQNYHFK 298
            F N H K
Sbjct: 512 LFSNGHVK 519



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 110/244 (45%), Gaps = 47/244 (19%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           ++ A   L EM + G EP+   +  LL+ +C+  S          ++ A  +F++MRVR 
Sbjct: 167 VNKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGS----------VKEAASLFEDMRVR- 215

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
             P +  F+ +L+ + +  +   +   L  M+E G  P +  Y++++    + G++ DA 
Sbjct: 216 FSPSLKHFTCLLYGWCKEGKLLEAKHVLVQMREAGFEPDIVVYNNLLSGYATAGKMGDAF 275

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           +LL E+ R G  P+A +Y    +   G++  + AM+++ +M+                  
Sbjct: 276 DLLKEIRRKGCDPNATSYTILIQALCGQEKMDEAMRVFVEMER----------------- 318

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                              SG   D+ +YT L+ G C+ +   +  Q    MI+KG +P 
Sbjct: 319 -------------------SGCDADVVTYTALVSGFCKWRMIDKGYQILQSMIQKGHMPN 359

Query: 255 KVTF 258
           ++T+
Sbjct: 360 QLTY 363



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 10/169 (5%)

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVR-NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            Y +++K L    +      LL EM R N V  ++E +    + +   +  N A+++  +
Sbjct: 117 NYKAMIKVLSKMKQFGAVWALLEEMRRDNSVLITSEVFVVVMRRFASSRMVNKAIEVLDE 176

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M + G C P+ + +  L+        +     ++ D++     P L  +T L++G C++ 
Sbjct: 177 MPKYG-CEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVR-FSPSLKHFTCLLYGWCKEG 234

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS-------DMLRTWRR 276
           K  EA    V+M E G  P  V +  L  G   +       D+L+  RR
Sbjct: 235 KLLEAKHVLVQMREAGFEPDIVVYNNLLSGYATAGKMGDAFDLLKEIRR 283



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 73/209 (34%), Gaps = 43/209 (20%)

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
           ++  +  T   +  V++   S   +  A E+L EM + G  P    + C           
Sbjct: 143 RDNSVLITSEVFVVVMRRFASSRMVNKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSV 202

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL----- 220
             A  L+  M+      P++  +  L+  +    ++   + +   ++ +G  PD+     
Sbjct: 203 KEAASLFEDMRVR--FSPSLKHFTCLLYGWCKEGKLLEAKHVLVQMREAGFEPDIVVYNN 260

Query: 221 ------------------------------DSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
                                          SYT+LI  LC ++K  EA + FVEM   G
Sbjct: 261 LLSGYATAGKMGDAFDLLKEIRRKGCDPNATSYTILIQALCGQEKMDEAMRVFVEMERSG 320

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
                VT+  L  G  +      WR + K
Sbjct: 321 CDADVVTYTALVSGFCK------WRMIDK 343


>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
 gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
 gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
 gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
 gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
          Length = 862

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 129/260 (49%), Gaps = 10/260 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI  + +  R + +   L  M    + P+++TYN ++N  C R  L     +E  + 
Sbjct: 179 YTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVIN-ACARGGLD----WEGLL- 232

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F EMR  GI+PD+ +++ +L   +       +      M + GI P + TYS +V
Sbjct: 233 ---GLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLV 289

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +      R+E   +LLGEM   G  P   +YN   + Y        AM ++ QM+  G C
Sbjct: 290 ETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAG-C 348

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN ++Y++L+ +F    R D VR+++ ++K S   PD  +Y +LI    E   +KE   
Sbjct: 349 TPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVT 408

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F +M+E+ + P   T+E +
Sbjct: 409 LFHDMVEENIEPDMETYEGI 428



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 109/216 (50%), Gaps = 6/216 (2%)

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           +VFDEM  +G+   V S++ +++ Y R  + + SL+ L+ MK + I P++ TY++V+   
Sbjct: 162 EVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINA- 220

Query: 125 CSCGRIEDAEELLG---EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           C+ G + D E LLG   EM   G+ P   TYN        R   + A  ++R M  DG  
Sbjct: 221 CARGGL-DWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMN-DGGI 278

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++ +Y+ L+  F  L R++ V ++  ++   G  PD+ SY +L+    +    KEA  
Sbjct: 279 VPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMG 338

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F +M   G  P   T+  L     QS      R+L
Sbjct: 339 VFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQL 374



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 131/308 (42%), Gaps = 28/308 (9%)

Query: 21  FLGEMIERGVEPNVVTYNVLLN-----GVCRRASL------------------HPSERFE 57
              EM   G++P++VTYN LL+     G+   A +                  H  E F 
Sbjct: 234 LFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFG 293

Query: 58  KTIRNAEKVFD---EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV 114
           K +R  EKV D   EM   G  PD+TS++++L  Y+++   + ++   + M+  G  P  
Sbjct: 294 K-LRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNA 352

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            TYS ++      GR +D  +L  EM  +   P A TYN   + +         + L+  
Sbjct: 353 NTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHD 412

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M E+ +  P+M +Y  +I         +  R+I   +  + + P   +YT +I    +  
Sbjct: 413 MVEENI-EPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAA 471

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
            ++EA   F  M E G  P   TF +L     +  +++    +  +L +  I    +  N
Sbjct: 472 LYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFN 531

Query: 295 YHFKPYRR 302
              + Y++
Sbjct: 532 AQIEAYKQ 539



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 123/274 (44%), Gaps = 16/274 (5%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           +M+E  +EP++ TY  ++   C +  LH          +A K+   M    I P   +++
Sbjct: 412 DMVEENIEPDMETYEGIIF-ACGKGGLH---------EDARKILQYMTANDIVPSSKAYT 461

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            V+  + +A   + +L   N M E G  P++ T+ S++      G ++++E +L  +V +
Sbjct: 462 GVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDS 521

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+  + +T+N   + Y+       A+K Y  M E   C P+  +   ++ ++     +D 
Sbjct: 522 GIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDM-EKSRCDPDERTLEAVLSVYSFARLVDE 580

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            RE + ++K S + P +  Y M++    + ++W +  +   EM+   +         + +
Sbjct: 581 CREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIK 640

Query: 264 GLIQSDMLRTWRRLK---KKLDEESITFGSEFQN 294
           G    D    W+ ++    KL+ E    G  F N
Sbjct: 641 GDYDDD--SNWQIVEYVLDKLNSEGCGLGIRFYN 672



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 126/288 (43%), Gaps = 32/288 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH---------- 51
           Y+ L+  + K+ R++     LGEM   G  P++ +YNVLL    +  S+           
Sbjct: 285 YSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQ 344

Query: 52  -----PSERFEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                P+      + N            ++F EM+    +PD  +++I++ V+      +
Sbjct: 345 AAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFK 404

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
             +   + M E+ I P + TY  ++      G  EDA ++L  M  N + PS++ Y    
Sbjct: 405 EVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVI 464

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE---IWNDVKG 213
           + +        A+  +  M E G   P++ +++ L+  F    R  +V+E   I + +  
Sbjct: 465 EAFGQAALYEEALVAFNTMHEVG-SNPSIETFHSLLYSFA---RGGLVKESEAILSRLVD 520

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           SG+  + D++   I    +  K++EA + +V+M +    P + T E +
Sbjct: 521 SGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAV 568



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 92/198 (46%), Gaps = 2/198 (1%)

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
           +P+   ++I++ +  R       L+  + M  +G+  +V +Y++++      GR E + E
Sbjct: 138 KPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLE 197

Query: 136 LLGEMVRNGVCPSAETYNCFFKE-YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           LL  M    + PS  TYN       RG  D  G + L+ +M+ +G+  P++ +YN L+  
Sbjct: 198 LLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGI-QPDIVTYNTLLSA 256

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                  D    ++  +   G+ PDL +Y+ L+    + ++ ++ C    EM   G LP 
Sbjct: 257 CAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPD 316

Query: 255 KVTFETLYRGLIQSDMLR 272
             ++  L     +S  ++
Sbjct: 317 ITSYNVLLEAYAKSGSIK 334



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 57/114 (50%)

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
           S   +   FKE+ GR D   +++L++ M+    C PN H Y I+I +      +D   E+
Sbjct: 104 SLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEV 163

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           ++++   G+   + SYT LI+      +++ + +    M  + + P  +T+ T+
Sbjct: 164 FDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTV 217



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 113/280 (40%), Gaps = 20/280 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + SL+Y + +   +  +E  L  +++ G+  N  T+N  +       +     +FE+ + 
Sbjct: 495 FHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIE------AYKQGGKFEEAV- 547

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K + +M     +PD  +   VL VYS A       ++   MK   I P++  Y  ++
Sbjct: 548 ---KTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMML 604

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK-EYRGRKDANGAMKLYRQMKEDGL 180
                  R +D  ELL EM+ N V    +      K +Y    +      +  ++  +G 
Sbjct: 605 AVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEG- 663

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS-----YTMLIHGLCEKQK 235
           C   +  YN L+     L + +    + N+    GL P+L       +++ +H + E   
Sbjct: 664 CGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLFPELFRKNKLVWSVDVHRMSEGGM 723

Query: 236 WKEACQYF---VEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
           +     +     +M+ KG LPQ     ++   L +S   R
Sbjct: 724 YTALSVWLNDINDMLLKGDLPQLAVVVSVRGQLEKSSAAR 763


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 148/297 (49%), Gaps = 16/297 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +I   CK  ++  A+ F+G M   G++PNVVTYN +++G C R            + 
Sbjct: 194 FNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGR----------VE 243

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +FD M+ RG++PD  ++   +    +  + + +   L  MKE G+ PT  TY++++
Sbjct: 244 GARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLI 303

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C+ G +E A +   +MVR G+ P+  TYN            + A  + ++M E GL 
Sbjct: 304 DGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGL- 362

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+  +YNILI  +     +     + +++   G+ P   +YT LI+ L ++ + K+A  
Sbjct: 363 VPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADD 422

Query: 242 YFVEMIEKGLLPQKVTFETLYRG-LIQSDMLRTWRRLKK----KLDEESITFGSEFQ 293
            F +++ KG+ P  + F  L  G     +M R +  LK+    K+  + +TF +  Q
Sbjct: 423 LFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQ 479



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 152/311 (48%), Gaps = 26/311 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF-EKTI 60
           Y S I G CK  +++ A   L +M E G+ P  VTYN L++G C + +L  +  + +K +
Sbjct: 264 YGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMV 323

Query: 61  RN------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           R                         A+ +  EM  +G+ PD  +++I+++ Y R    +
Sbjct: 324 REGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVK 383

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    + M  KGI PT  TY+S++  L   GR++ A++L  ++VR G+ P    +N   
Sbjct: 384 KAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALI 443

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +    + + A  + ++M +  + VP+  ++N L+       +++  RE+  ++K  G+
Sbjct: 444 DGHCANGNMDRAFAMLKEMDQMKV-VPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGI 502

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD  SY  LI G  ++   K+A +   EM+  G  P  +T+  L +GL +++      +
Sbjct: 503 KPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQ 562

Query: 277 LKKKLDEESIT 287
           L K++  + IT
Sbjct: 563 LLKEMISKGIT 573



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 132/264 (50%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI+      ++D A+  + EM E+G+ P+ VTYN+L+NG CR  +          ++
Sbjct: 334 YNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGN----------VK 383

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + DEM  +GI+P   +++ +++V S+  + + + D    +  KGI P +  +++++
Sbjct: 384 KAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALI 443

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C+ G ++ A  +L EM +  V P   T+N   +          A +L  +MK  G+ 
Sbjct: 444 DGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGI- 502

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  SYN LI  +     M     + +++   G  P L +Y  LI GLC+ ++   A Q
Sbjct: 503 KPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQ 562

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
              EMI KG+ P   T+ +L  G+
Sbjct: 563 LLKEMISKGITPNDNTYLSLIEGI 586



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 129/253 (50%), Gaps = 11/253 (4%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           + K NR + A     EM    ++ +VVT+N+++N +C+          E  ++ A++   
Sbjct: 166 FLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCK----------EGKLKKAKEFIG 215

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
            M   GI+P+V +++ ++H Y    + + +    + MK +G+ P   TY S +  +C  G
Sbjct: 216 LMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEG 275

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           ++E+A  +L +M   G+ P+A TYN     Y  + +   A     +M  +GL +P + +Y
Sbjct: 276 KLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGL-MPTVSTY 334

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N+LI       +MD    I  ++   GL PD  +Y +LI+G C     K+A     EMI 
Sbjct: 335 NMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMIS 394

Query: 249 KGLLPQKVTFETL 261
           KG+ P +VT+ +L
Sbjct: 395 KGIQPTRVTYTSL 407



 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 134/285 (47%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I+G+C   R++ A      M  RGV+P+  TY   ++G+C+          E  + 
Sbjct: 229 YNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCK----------EGKLE 278

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + ++M+  G+ P   +++ ++  Y      +++ D  + M  +G+ PTV+TY+ ++
Sbjct: 279 EASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLI 338

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L    ++++A+ ++ EM   G+ P + TYN     Y    +   A  L+ +M   G+ 
Sbjct: 339 HALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGI- 397

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P   +Y  LI +     RM    +++  +   G+ PDL  +  LI G C       A  
Sbjct: 398 QPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFA 457

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM +  ++P +VTF TL +G  +   +   R L +++    I
Sbjct: 458 MLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGI 502



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 10/152 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+ +LI G C    +D A   L EM +  V P+ VT+N L+ G CR          E  +
Sbjct: 438 MFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCR----------EGKV 487

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++ +EM+ RGI+PD  S++ ++  YS+    + +    + M   G  PT+ TY+++
Sbjct: 488 EAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNAL 547

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
           ++ LC     + AE+LL EM+  G+ P+  TY
Sbjct: 548 IQGLCKNEEGDHAEQLLKEMISKGITPNDNTY 579



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 102/238 (42%), Gaps = 36/238 (15%)

Query: 62  NAEKVFDEMRVRGIEP-----------------------------------DVTSFSIVL 86
           +A + FD M+ +G+ P                                    V +F+I++
Sbjct: 139 DAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMI 198

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
           +V  +  + + + + +  M+  GI P V TY++++   CS GR+E A  +   M   GV 
Sbjct: 199 NVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVK 258

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P + TY  F            A  +  +MKE GL  P   +YN LI  +     ++M  +
Sbjct: 259 PDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGL-RPTAVTYNTLIDGYCNKGNLEMAFD 317

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             + +   GL P + +Y MLIH L    K  EA     EM EKGL+P  VT+  L  G
Sbjct: 318 YRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILING 375


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 138/268 (51%), Gaps = 21/268 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G C   R+  A+     MI+ G  P+VVTYN LL+G C+   L           
Sbjct: 13  YNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELD---------- 62

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+FD    RG  PDV +++ +++ + +A +   +   L  M  + + P V TY+S+V
Sbjct: 63  EALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLV 122

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF----KEYRGRKDANGAMKLYRQMKE 177
             LC  GR+++A  L+   V  G  P+  TY+       +E RG  +   A+KL+  + +
Sbjct: 123 NGLCKNGRVDEARMLI---VDKGFSPNVITYSTLISGLCRELRGVSE---ALKLFGSVLK 176

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G   P + +YNILI   +  +R++   E+++ +   GL PD  +YT+ I GLC+  + +
Sbjct: 177 QGY-EPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVE 235

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +A     +M EKG +P  V+   +  GL
Sbjct: 236 DALLMLKDMDEKGCVPDVVSHNAVINGL 263



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 142/285 (49%), Gaps = 26/285 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK +++D A+R L  M+   + P+VVTYN L+NG+C+   +           
Sbjct: 83  YNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRV----------- 131

Query: 62  NAEKVFDEMRV----RGIEPDVTSFSIVLHVYSRAHQP-QLSLDKLNFMKEKGICPTVAT 116
                 DE R+    +G  P+V ++S ++    R  +    +L     + ++G  P V T
Sbjct: 132 ------DEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPT 185

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+ ++  L    R+ +A EL   +V++G+ P A TY  F            A+ + + M 
Sbjct: 186 YNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMD 245

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           E G CVP++ S+N +I       R+D    + + ++  G  P+  S+  LI G C   KW
Sbjct: 246 EKG-CVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKW 304

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           K+A   F EM+++G+ P  VT+  L  GL ++   R   R+K+ +
Sbjct: 305 KKAMTTFKEMLKRGVKPTVVTYNILVDGLCKA---RQEGRIKEAI 346



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 142/298 (47%), Gaps = 48/298 (16%)

Query: 2   YTSLIYGWCK-INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y++LI G C+ +  +  A +  G ++++G EP V TYN+L++G+ +          E  +
Sbjct: 150 YSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLK----------EDRV 199

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++F  +   G+EPD  ++++ +    +A + + +L  L  M EKG  P V ++++V
Sbjct: 200 NEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAV 259

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE--- 177
           +  LC   R+++AE LL  M   G  P+A ++N              AM  +++M +   
Sbjct: 260 INGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGV 319

Query: 178 -----------DGLC-----------------------VPNMHSYNILIGMFMALNRMDM 203
                      DGLC                       VP++ +Y+ LI       ++D 
Sbjct: 320 KPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDD 379

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            R +   ++  G  P++ +Y  LI GLC  +K  EA + FV M+EKG +P  +T+ T+
Sbjct: 380 ARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTI 437



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 126/262 (48%), Gaps = 15/262 (5%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M + G  PN +TYN LL+G+C    +           +A+ +++ M   G  PDV +++ 
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMS----------DAQALYERMIKAGYSPDVVTYNT 50

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           +LH + +  +   +L   +   ++G  P V TY++++   C   ++++A+ +L  MV   
Sbjct: 51  LLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSEN 110

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMDM 203
           + P   TYN            NG +   R +  D    PN+ +Y+ LI G+   L  +  
Sbjct: 111 LVPDVVTYNSLVNGLC----KNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSE 166

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             +++  V   G  P++ +Y +LI GL ++ +  EA + F  +++ GL P  +T+     
Sbjct: 167 ALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFID 226

Query: 264 GLIQSDMLRTWRRLKKKLDEES 285
           GL ++  +     + K +DE+ 
Sbjct: 227 GLCKAGRVEDALLMLKDMDEKG 248



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 55/105 (52%)

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN  +YN L+       RM   + ++  +  +G  PD+ +Y  L+HG C+  +  EA + 
Sbjct: 8   PNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKI 67

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           F   +++G +P  VT+  L  G  ++D L   +R+ +++  E++ 
Sbjct: 68  FDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLV 112


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 136/264 (51%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G+CKI  +  A     EM+  G+ PNVVT+ +L++G+C+   +           
Sbjct: 266 YNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEM----------V 315

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K   +M   G+ P++  ++ ++  Y +A     +L   + +++  I P V TYS ++
Sbjct: 316 SARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILI 375

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC   R+E+A+ LL EM + G  P+A TYN     Y    +   A+++  QM E G+ 
Sbjct: 376 KGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGI- 434

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +++ LI  +    +M+    ++ ++   GL PD+ +YT LI G  +    KEA +
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFR 494

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
              EM E GL P   T   L  GL
Sbjct: 495 LHKEMQEAGLHPNVFTLSCLIDGL 518



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 132/263 (50%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G C+      A R   EMIE+ + P VV Y +L+ G+C           E  I 
Sbjct: 196 YGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCG----------ESRIS 245

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE +F  MR  G+ P++ +++ ++  Y +    + +L+    M   G+ P V T+  ++
Sbjct: 246 EAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILI 305

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    +  A + L +M   GV P+   YNC    Y    + + A+ L+ ++++  + 
Sbjct: 306 DGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEI- 364

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y+ILI     ++RM+    +  ++K  G  P+  +Y  LI G C++   ++A +
Sbjct: 365 LPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIE 424

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
              +M EKG+ P  +TF TL  G
Sbjct: 425 VCSQMTEKGIEPNIITFSTLIDG 447



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 137/286 (47%), Gaps = 11/286 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G C  +RI  AE     M   G+ PN+ TYN +++G C+ A           +
Sbjct: 230 IYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAH----------V 279

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A +++ EM   G+ P+V +F I++    +  +   +   L  M   G+ P +  Y+ +
Sbjct: 280 KKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCL 339

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G + +A  L  E+ ++ + P   TY+   K   G      A  L ++MK+ G 
Sbjct: 340 IDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGF 399

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +PN  +YN LI  +     M+   E+ + +   G+ P++ +++ LI G C+  K + A 
Sbjct: 400 -LPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAM 458

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             + EM+ KGLLP  V +  L  G  +    +   RL K++ E  +
Sbjct: 459 GLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGL 504



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 136/301 (45%), Gaps = 18/301 (5%)

Query: 2   YTSLIYGWCKI--NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           +T  ++G   I  + + + E  L    +  V P +   N++L+G+ ++       RF+  
Sbjct: 124 FTPNVFGVLIIAFSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKKG------RFD-- 175

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
                KV+ +M  RG  P+V ++  ++    R      +    + M EK I PTV  Y+ 
Sbjct: 176 --TMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTI 233

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +++ LC   RI +AE +   M  +G+ P+  TYN     Y        A++LY++M  DG
Sbjct: 234 LIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDG 293

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           L +PN+ ++ ILI      + M   R+   D+   G+ P++  Y  LI G C+     EA
Sbjct: 294 L-LPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEA 352

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQN 294
                E+ +  +LP   T+  L +GL   D +     L     KK     ++T+ +    
Sbjct: 353 LSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDG 412

Query: 295 Y 295
           Y
Sbjct: 413 Y 413



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 91/181 (50%), Gaps = 14/181 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK   ++ A     +M E+G+EPN++T++ L++G C+   +           
Sbjct: 406 YNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEA--------- 456

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++ EM ++G+ PDV +++ ++  + +    + +      M+E G+ P V T S ++
Sbjct: 457 -AMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLI 515

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GRI DA +L   + + G   +    N   +     +  + A+ L+R + E  +C
Sbjct: 516 DGLCKDGRISDAIKLF--LAKTGTDTTGSKTNELDRSL--YQMCSLALSLFRGISEPCIC 571

Query: 182 V 182
           V
Sbjct: 572 V 572


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 143/282 (50%), Gaps = 14/282 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+ K    D A     EM++RG+ P+VVTYN ++  +C+           + + 
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCK----------AQAMD 248

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V + M   G+ PD  +++ +LH Y  + QP+ ++  L  M+  G+ P V TYS ++
Sbjct: 249 KAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLM 308

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A ++   M + G+ P   TY    + Y  +        L   M  +G+ 
Sbjct: 309 DYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 368

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ + ++ILI  +    ++D    +++ ++  GL P+  +Y  +I  LC+  + ++A  
Sbjct: 369 -PDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAML 427

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           YF +MI++GL P  + + +L  GL   +    W R ++ + E
Sbjct: 428 YFEQMIDEGLSPGNIVYNSLIHGLCTCN---KWERAEELILE 466



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 139/295 (47%), Gaps = 14/295 (4%)

Query: 2   YTSLIYGWCKINRI-DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +T L+ G C   R  D  +  L  M E G  PNV +YN+LL G+C         R ++ +
Sbjct: 125 FTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLC------DENRSQEAL 178

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                + D+ R  G  PDV S++ V++ + +      +    + M ++GI P V TY+S+
Sbjct: 179 ELLHMMADD-RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSI 237

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC    ++ A E+L  MV+NGV P   TYN     Y        A+   ++M+ DG+
Sbjct: 238 IAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGV 297

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +Y++L+       R    R+I++ +   GL P++ +Y  L+ G   K    E  
Sbjct: 298 -EPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 356

Query: 241 QYFVEMIEKGLLPQKVTFETLY-----RGLIQSDMLRTWRRLKKKLDEESITFGS 290
                M+  G+ P    F  L      +G +   ML   +  ++ L+  ++T+G+
Sbjct: 357 GLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGA 411



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 143/308 (46%), Gaps = 26/308 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           Y+ L+   CK  R   A +    M +RG++P + TY  LL G   + +L           
Sbjct: 304 YSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 363

Query: 51  ----HPSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
               HP              +  +  A  VF +MR +G+ P+  ++  V+ +  ++ + +
Sbjct: 364 RNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVE 423

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++     M ++G+ P    Y+S++  LC+C + E AEEL+ EM+  G+C +   +N   
Sbjct: 424 DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII 483

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +        + KL+  M   G+  PN+ +YN LI  +    +MD   ++ + +   GL
Sbjct: 484 DSHCKEGRVIESEKLFELMVRIGV-KPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGL 542

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  +Y+ LI+G C+  + ++A   F EM   G+ P  +T+  + +GL Q+      + 
Sbjct: 543 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 602

Query: 277 LKKKLDEE 284
           L  ++ E 
Sbjct: 603 LYVRITES 610



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 142/295 (48%), Gaps = 11/295 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SLI+G C  N+ + AE  + EM++RG+  N + +N +++  C+          E  +
Sbjct: 443 VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCK----------EGRV 492

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             +EK+F+ M   G++P+V +++ +++ Y  A +   ++  L+ M   G+ P   TYS++
Sbjct: 493 IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C   R+EDA  L  EM  +GV P   TYN   +     +    A +LY ++ E G 
Sbjct: 553 INGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGT 612

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +  + +YNI++         D   +++ ++    L  +  ++ ++I  L +  +  EA 
Sbjct: 613 QI-ELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAK 671

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
             FV     GL+P   T+  +   +I   +L    +L   +++   T  S   N+
Sbjct: 672 DLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNF 726



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 142/281 (50%), Gaps = 15/281 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +++ LI  +    ++D A     +M ++G+ PN VTY  ++  +C+      S R E  +
Sbjct: 373 VFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCK------SGRVEDAM 426

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              E++ DE    G+ P    ++ ++H     ++ + + + +  M ++GIC     ++S+
Sbjct: 427 LYFEQMIDE----GLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSI 482

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  GR+ ++E+L   MVR GV P+  TYN     Y      + AMKL   M   GL
Sbjct: 483 IDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGL 542

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  +Y+ LI  +  ++RM+    ++ +++ SG+ PD+ +Y +++ GL + ++   A 
Sbjct: 543 -KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 601

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL----IQSDMLRTWRRL 277
           + +V + E G   +  T+  +  GL    +  D L+ ++ L
Sbjct: 602 ELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNL 642



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 128/282 (45%), Gaps = 28/282 (9%)

Query: 30  VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89
           V P++ TY +L+   CR   L   +     + N  K       +G   D  +F+ +L   
Sbjct: 83  VTPDLCTYGILIGCCCRAGRL---DLGFAALGNVIK-------KGFRVDAIAFTPLLKGL 132

Query: 90  SRAHQPQLSLD-KLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN---GV 145
               +   ++D  L  M E G  P V +Y+ ++K LC   R ++A ELL  M  +   G 
Sbjct: 133 CADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGS 192

Query: 146 CPSAETY----NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
            P   +Y    N FFKE     D++ A   Y +M + G+ +P++ +YN +I        M
Sbjct: 193 PPDVVSYTTVINGFFKE----GDSDKAYSTYHEMLDRGI-LPDVVTYNSIIAALCKAQAM 247

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           D   E+ N +  +G+ PD  +Y  ++HG C   + KEA  +  +M   G+ P  VT+  L
Sbjct: 248 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLL 307

Query: 262 YRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNYHFK 298
              L ++      R++     K+ L  E  T+G+  Q Y  K
Sbjct: 308 MDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATK 349



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 106/217 (48%), Gaps = 9/217 (4%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG---ICPTVATYS 118
           +A  VFDE+  RG    +   +  L   +R   P  ++ + N M   G   + P + TY 
Sbjct: 33  DARHVFDELLRRGRGASIYGLNRALADVAR-DSPAAAVSRYNRMARAGADEVTPDLCTYG 91

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL-YRQMKE 177
            ++ C C  GR++     LG +++ G    A  +    K     K  + AM +  R+M E
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWN---DVKGSGLGPDLDSYTMLIHGLCEKQ 234
            G C+PN+ SYNIL+      NR     E+ +   D +G G  PD+ SYT +I+G  ++ 
Sbjct: 152 LG-CIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEG 210

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              +A   + EM+++G+LP  VT+ ++   L ++  +
Sbjct: 211 DSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAM 247



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 82/192 (42%), Gaps = 25/192 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR-RASLHPSERF---- 56
           Y++LI G+CKI+R++ A     EM   GV P+++TYN++L G+ + R +    E +    
Sbjct: 549 YSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRIT 608

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                K   +A ++F  + +  ++ +  +F+I++    +  +  
Sbjct: 609 ESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRND 668

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + D        G+ P   TY  + + +   G +E+ ++L   M  NG    +   N   
Sbjct: 669 EAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIV 728

Query: 157 KEYRGRKDANGA 168
           +E   R +   A
Sbjct: 729 RELLQRGEITRA 740


>gi|297823811|ref|XP_002879788.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325627|gb|EFH56047.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 867

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 136/279 (48%), Gaps = 12/279 (4%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           CK  ++D A  FL  M  +G+EPNVV YN ++   CR           K +  A  +F E
Sbjct: 460 CKQGKVDAATSFLRMMENKGIEPNVVFYNNMMLAHCRM----------KNMDLARSIFSE 509

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           M  +G++P+  ++SI++  + +    Q + + +N M           Y++++  LC  G+
Sbjct: 510 MLEKGLQPNNFTYSILIDGFFKNQDEQNAWEVINQMIASNFEANEVIYNTIINGLCKVGQ 569

Query: 130 IEDAEELLGEMVRNG-VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
              A+E+L  +++         +YN     +    D + A++ YR+M E+G+  PN+ ++
Sbjct: 570 TSKAKEMLQNLIKEKRYSMGCTSYNSIIDGFFKEGDTDSAVEAYREMSENGIS-PNVVTF 628

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
             LI  F   NRMD+  E+ +++K   L  D+ +Y  LI G C+K   K A   F E++E
Sbjct: 629 TSLINGFCKSNRMDLALEMIHEMKSKDLKLDVPAYGALIDGFCKKNDMKTAYTLFSELLE 688

Query: 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            GL+P    +  L  G      +     L KK+  + I+
Sbjct: 689 LGLMPNVSVYNNLISGFRNLGKMDAAIDLYKKMVNDGIS 727



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 133/290 (45%), Gaps = 27/290 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR-------------- 47
           Y +++   C++  +D+A     EM+E+G++PN  TY++L++G  +               
Sbjct: 487 YNNMMLAHCRMKNMDLARSIFSEMLEKGLQPNNFTYSILIDGFFKNQDEQNAWEVINQMI 546

Query: 48  -ASLHPSERFEKTIRNA-----------EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
            ++   +E    TI N            E + + ++ +      TS++ ++  + +    
Sbjct: 547 ASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMGCTSYNSIIDGFFKEGDT 606

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +++    M E GI P V T++S++   C   R++ A E++ EM    +      Y   
Sbjct: 607 DSAVEAYREMSENGISPNVVTFTSLINGFCKSNRMDLALEMIHEMKSKDLKLDVPAYGAL 666

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +  + D   A  L+ ++ E GL +PN+  YN LI  F  L +MD   +++  +   G
Sbjct: 667 IDGFCKKNDMKTAYTLFSELLELGL-MPNVSVYNNLISGFRNLGKMDAAIDLYKKMVNDG 725

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +  DL +YT +I GL +      A   + E++  G++P ++ +  L  GL
Sbjct: 726 ISCDLFTYTTMIDGLLKDGNLILASDLYSELLALGIVPDEILYVVLVNGL 775



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 132/265 (49%), Gaps = 12/265 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMI-ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           +Y ++I G CK+ +   A+  L  +I E+       +YN +++G  +          E  
Sbjct: 556 IYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMGCTSYNSIIDGFFK----------EGD 605

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
             +A + + EM   GI P+V +F+ +++ + ++++  L+L+ ++ MK K +   V  Y +
Sbjct: 606 TDSAVEAYREMSENGISPNVVTFTSLINGFCKSNRMDLALEMIHEMKSKDLKLDVPAYGA 665

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++   C    ++ A  L  E++  G+ P+   YN     +R     + A+ LY++M  DG
Sbjct: 666 LIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNNLISGFRNLGKMDAAIDLYKKMVNDG 725

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +   ++ +Y  +I   +    + +  ++++++   G+ PD   Y +L++GL +K ++  A
Sbjct: 726 ISC-DLFTYTTMIDGLLKDGNLILASDLYSELLALGIVPDEILYVVLVNGLSKKGQFVRA 784

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRG 264
            +   EM +K   P  + + T+  G
Sbjct: 785 SKMLEEMKKKDATPNVLIYSTVIAG 809



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 129/302 (42%), Gaps = 50/302 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           +++  +   CK+  + MA   L EM E+G V  +  TY  ++    +          E  
Sbjct: 276 LFSLAVQAACKMKDLVMALDLLREMREKGGVPASQETYTSVIVACVK----------EGN 325

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +  A KV DEM   GI   V + + ++  +   ++   +LD  N M+E+G+ P    +S 
Sbjct: 326 MEEAVKVKDEMVGFGIPMSVIAATSLITGFCNGNELGKALDFFNRMEEEGLAPDKVMFSV 385

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSA--------------------ETYNCFFKEY 159
           +++  C    +E A E+   M   G+ PS+                    E +N  F+ +
Sbjct: 386 MIEWFCKNMEMEKAVEIYKRMKSVGIAPSSVLVHKMIQGCLKAESPEAALEIFNDSFETW 445

Query: 160 ----------------RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
                           +G+ DA  A    R M+  G+  PN+  YN ++     +  MD+
Sbjct: 446 IAHGFMCNKIFLLLCKQGKVDA--ATSFLRMMENKGI-EPNVVFYNNMMLAHCRMKNMDL 502

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            R I++++   GL P+  +Y++LI G  + Q  + A +   +MI       +V + T+  
Sbjct: 503 ARSIFSEMLEKGLQPNNFTYSILIDGFFKNQDEQNAWEVINQMIASNFEANEVIYNTIIN 562

Query: 264 GL 265
           GL
Sbjct: 563 GL 564



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 106/259 (40%), Gaps = 42/259 (16%)

Query: 38  NVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
           N+L+  V    +L PS      + ++++   E+  R       +F+ +L+ Y R  +   
Sbjct: 135 NLLVMFVSSNPTLIPSAMVNNLVDSSKRFDFELSSR-------AFNYLLNAYIRNRRMDY 187

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC----------- 146
           ++D  N M ++ + P V   ++V+  L     I++A+E+  +MV  GV            
Sbjct: 188 AVDCFNLMVDRNVVPFVPYVNNVLSSLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMR 247

Query: 147 ------------------------PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
                                   P    ++   +     KD   A+ L R+M+E G   
Sbjct: 248 ASLRERKPEEAMKIFRRVMSRGAEPDGLLFSLAVQAACKMKDLVMALDLLREMREKGGVP 307

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
            +  +Y  +I   +    M+   ++ +++ G G+   + + T LI G C   +  +A  +
Sbjct: 308 ASQETYTSVIVACVKEGNMEEAVKVKDEMVGFGIPMSVIAATSLITGFCNGNELGKALDF 367

Query: 243 FVEMIEKGLLPQKVTFETL 261
           F  M E+GL P KV F  +
Sbjct: 368 FNRMEEEGLAPDKVMFSVM 386



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 25/177 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK N +  A     E++E G+ PNV  YN L++G      +  +    K + 
Sbjct: 663 YGALIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNNLISGFRNLGKMDAAIDLYKKMV 722

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           N                         A  ++ E+   GI PD   + ++++  S+  Q  
Sbjct: 723 NDGISCDLFTYTTMIDGLLKDGNLILASDLYSELLALGIVPDEILYVVLVNGLSKKGQFV 782

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
            +   L  MK+K   P V  YS+V+      G + +A  +  EM+  G+      +N
Sbjct: 783 RASKMLEEMKKKDATPNVLIYSTVIAGHHREGNLNEAFRVHDEMLEKGLVHDDTIFN 839


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 137/262 (52%), Gaps = 13/262 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI G+C+ + +  A   L EM +R + P+ V+Y  ++NG+C            K +  A 
Sbjct: 409 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHC----------KDLSLAN 458

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           K+ ++M   G++P+V  +SI++  Y+   + + +   L+ M   G+ P +  Y++++ CL
Sbjct: 459 KLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL 518

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
              G++E+A   L E+   G+ P A T+  F   Y        A K + +M + GL +PN
Sbjct: 519 SKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGL-MPN 577

Query: 185 MHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
              Y +LI G F A N M+ +  I+  +   G+ PD+ + +  IHGL +  + +EA + F
Sbjct: 578 NPLYTVLINGHFKAGNLMEAL-SIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVF 636

Query: 244 VEMIEKGLLPQKVTFETLYRGL 265
            E+ EKGL+P   T+ +L  G 
Sbjct: 637 SELKEKGLVPDVFTYSSLISGF 658



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 137/285 (48%), Gaps = 12/285 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + + I G+ K  ++  A ++  EM++ G+ PN   Y VL+NG  +  +L           
Sbjct: 546 FGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNL----------M 595

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F  +   G+ PDV + S  +H   +  + Q +L   + +KEKG+ P V TYSS++
Sbjct: 596 EALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI 655

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +E A EL  EM   G+ P+   YN          D   A KL+  M E GL 
Sbjct: 656 SGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGL- 714

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y+ +I  +     +     +++++   G+ P    Y  L+HG C++   ++A  
Sbjct: 715 EPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMN 774

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F EM++KG     ++F TL  G  +S  ++   +L +++  + I
Sbjct: 775 LFREMLQKG-FATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQI 818



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 136/279 (48%), Gaps = 15/279 (5%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           ++LI G+ +   ID   R    M+  G+  N++TYNVL++G+C+         F K  + 
Sbjct: 337 SALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCK---------FGKMEKA 387

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           AE +   M   G +P+  +F +++  Y R H    +L+ L+ M+++ + P+  +Y +++ 
Sbjct: 388 AE-ILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMIN 446

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC C  +  A +LL +M  +G+ P+   Y+     Y        A +L   M   G+  
Sbjct: 447 GLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGV-A 505

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++  YN +I       +M+       +++G GL PD  ++   I G  +  K  EA +Y
Sbjct: 506 PDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKY 565

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRL 277
           F EM++ GL+P    +  L  G  ++    + L  +RRL
Sbjct: 566 FDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRL 604



 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 135/298 (45%), Gaps = 44/298 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+ +I G C++  ID A      M E+G+ PN  TY ++  G+CR           K +
Sbjct: 265 IYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCR----------AKRM 314

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+  F+EM+  G++PD  + S ++  + R       L   + M   GI   + TY+ +
Sbjct: 315 NEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVL 374

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE--- 177
           +  LC  G++E A E+L  MV  G  P++ T+    + Y    +   A++L  +M++   
Sbjct: 375 IHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNL 434

Query: 178 -----------DGLC--------------------VPNMHSYNILIGMFMALNRMDMVRE 206
                      +GLC                     PN+  Y+ILI  + +  R++  R 
Sbjct: 435 VPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARR 494

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           + + +  SG+ PD+  Y  +I  L +  K +EA  Y +E+  +GL P  VTF     G
Sbjct: 495 LLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILG 552



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 136/283 (48%), Gaps = 12/283 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +L+ G CK   I  A +    M E+G+EP+ VTY+ +++G C+           + +
Sbjct: 685 IYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCK----------SENV 734

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F EM  +G++P    ++ ++H   +    + +++    M +KG   T+ +++++
Sbjct: 735 AEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTL-SFNTL 793

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C   +I++A +L  EM+   + P   TY      +        A  L+++M+E  L
Sbjct: 794 IDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNL 853

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            V  + +Y  L+  +  L +   V  ++  +   G+ PD  +Y ++I+  C++    EA 
Sbjct: 854 IVDTV-TYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAF 912

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           +   E++ KG+L +    + L   L + + L    +L  ++ E
Sbjct: 913 KLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGE 955



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 123/283 (43%), Gaps = 15/283 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI+G CK  +++ A   L  M+  G +PN  T+ +L+ G CR          E  + 
Sbjct: 371 YNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCR----------EHNMG 420

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ DEM  R + P   S+  +++         L+   L  M   G+ P V  YS ++
Sbjct: 421 RALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILI 480

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               S GRIE+A  LL  M  +GV P    YN              A     +++  GL 
Sbjct: 481 MAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGL- 539

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  ++   I  +    +M    + ++++   GL P+   YT+LI+G  +     EA  
Sbjct: 540 KPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALS 599

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKKK 280
            F  +   G+LP   T      GL+++    + L+ +  LK+K
Sbjct: 600 IFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEK 642



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 123/276 (44%), Gaps = 12/276 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I G+CK   +  A     EM  +GV+P+   YN L++G C+          E  + 
Sbjct: 721 YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCK----------EGDME 770

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM  +G    + SF+ ++  Y ++ + Q +      M  K I P   TY++V+
Sbjct: 771 KAMNLFREMLQKGFATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVI 829

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++E+A  L  EM    +     TY      Y     ++    L+ +M   G+ 
Sbjct: 830 DWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGV- 888

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y ++I      + +    ++ ++V G G+      + +LI  LC+++   EA +
Sbjct: 889 KPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASK 948

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
              EM E GL P      TL R   ++  +    R+
Sbjct: 949 LLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRV 984



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 123/278 (44%), Gaps = 11/278 (3%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           SL+    K   +++  +    M++  +  +V TY  L+  +C+   L          R A
Sbjct: 198 SLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDL----------RGA 247

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
           ++V  EM  +G+ P+   +S+V+    +      +++    M EKG+ P   TY+ +   
Sbjct: 248 KRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAG 307

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC   R+ +A+    EM + G+ P     +     +    D +  +++   M   G+ + 
Sbjct: 308 LCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPI- 366

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N+ +YN+LI       +M+   EI   +   G  P+  ++ +LI G C +     A +  
Sbjct: 367 NLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELL 426

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            EM ++ L+P  V++  +  GL     L    +L +K+
Sbjct: 427 DEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKM 464



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 11/228 (4%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            + +LI G+CK  +I  A +   EMI + + P+ VTY  +++  C+   +           
Sbjct: 790  FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKM----------E 839

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             A  +F EM+ R +  D  +++ +++ Y++  Q          M  KG+ P   TY  V+
Sbjct: 840  EANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVI 899

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               C    + +A +L  E+V  G+      ++        R+D   A KL  +M E GL 
Sbjct: 900  YAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGL- 958

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
             P++ + N L+  F    +MD    ++  VK  GL PD  +   L++G
Sbjct: 959  KPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNG 1006



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 102/231 (44%), Gaps = 22/231 (9%)

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK-GICPTVATYSSVVKCLCSCGRIEDA 133
           + PDV     VLH  ++   P+  LD   + + + G+   + ++S +   LC+      A
Sbjct: 69  LNPDV--IRAVLH-QNQVGDPKRLLDFFYWSQSQMGVPQFLDSFSILAVQLCNSELFGLA 125

Query: 134 EELLGEMVRNGVCPSA--ETYNCFFKEYRGRKDA---------------NGAMKLYRQMK 176
             +L +M+R     S+  ++   +F+ Y G                   + A  ++   K
Sbjct: 126 NGVLTQMIRTPYSSSSILDSVLFWFRNYGGSSPVVFDILIDSYKRMGMLDEAANVFFVAK 185

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
            D + + ++   N L+   +    M++  +++N +  + +G D+ +YT L+  LC+    
Sbjct: 186 NDSILI-SLIRCNSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDL 244

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           + A +  +EM EKGL P +  +  +  G+ Q   +     LK+ + E+ + 
Sbjct: 245 RGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLV 295


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 136/264 (51%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G+CKI  +  A     EM+  G+ PNVVT+ +L++G+C+   +  + +F     
Sbjct: 266 YNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKF----- 320

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                  +M   G+ P++  ++ ++  Y +A     +L   + +++  I P V TYS ++
Sbjct: 321 -----LIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILI 375

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC   R+E+A+ LL EM + G  P+A TYN     Y    +   A+++  QM E G+ 
Sbjct: 376 KGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGI- 434

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +++ LI  +    +M+    ++ ++   GL PD+ +YT LI G  +    KEA +
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFR 494

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
              EM E GL P   T   L  GL
Sbjct: 495 LHKEMQEAGLHPNVFTLSCLIDGL 518



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 132/263 (50%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G C+      A R   EMIE+ + P VV Y +L+ G+C           E  I 
Sbjct: 196 YGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCG----------ESRIS 245

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE +F  MR  G+ P++ +++ ++  Y +    + +L+    M   G+ P V T+  ++
Sbjct: 246 EAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILI 305

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    +  A + L +M   GV P+   YNC    Y    + + A+ L+ ++++  + 
Sbjct: 306 DGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEI- 364

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y+ILI     ++RM+    +  ++K  G  P+  +Y  LI G C++   ++A +
Sbjct: 365 LPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIE 424

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
              +M EKG+ P  +TF TL  G
Sbjct: 425 VCSQMTEKGIEPNIITFSTLIDG 447



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 137/286 (47%), Gaps = 11/286 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G C  +RI  AE     M   G+ PN+ TYN +++G C+ A           +
Sbjct: 230 IYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAH----------V 279

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A +++ EM   G+ P+V +F I++    +  +   +   L  M   G+ P +  Y+ +
Sbjct: 280 KKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCL 339

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G + +A  L  E+ ++ + P   TY+   K   G      A  L ++MK+ G 
Sbjct: 340 IDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGF 399

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +PN  +YN LI  +     M+   E+ + +   G+ P++ +++ LI G C+  K + A 
Sbjct: 400 -LPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAM 458

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             + EM+ KGLLP  V +  L  G  +    +   RL K++ E  +
Sbjct: 459 GLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGL 504



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 137/292 (46%), Gaps = 22/292 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G C ++R++ A+  L EM ++G  PN VTYN L++G C+          E  + 
Sbjct: 371 YSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCK----------EGNME 420

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V  +M  +GIEP++ +FS ++  Y +A + + ++     M  KG+ P V  Y++++
Sbjct: 421 KAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALI 480

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK----- 176
                 G  ++A  L  EM   G+ P+  T +C           + A+KL+         
Sbjct: 481 DGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTT 540

Query: 177 -------EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
                  +  LC PN   Y  LI       R+    + ++D++ SGL PD+ +  ++I G
Sbjct: 541 GSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQG 600

Query: 230 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
                  ++      ++++ G++P    +  L +G  +S  L++  R  + L
Sbjct: 601 HFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALRCSEDL 652



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 16/271 (5%)

Query: 30  VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89
           V P +   N++L+G+ ++       RF+       KV+ +M  RG  P+V ++  ++   
Sbjct: 154 VLPAMQACNMVLDGLVKKG------RFD----TMWKVYGDMVARGASPNVVTYGTLIDGC 203

Query: 90  SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
            R      +    + M EK I PTV  Y+ +++ LC   RI +AE +   M  +G+ P+ 
Sbjct: 204 CRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNL 263

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
            TYN     Y        A++LY++M  DGL +PN+ ++ ILI      + M   R+   
Sbjct: 264 YTYNTMMDGYCKIAHVKKALELYQEMLGDGL-LPNVVTFGILIDGLCKTDEMVSARKFLI 322

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           D+   G+ P++  Y  LI G C+     EA     E+ +  +LP   T+  L +GL   D
Sbjct: 323 DMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVD 382

Query: 270 MLRTWRRL-----KKKLDEESITFGSEFQNY 295
            +     L     KK     ++T+ +    Y
Sbjct: 383 RMEEADGLLQEMKKKGFLPNAVTYNTLIDGY 413


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 147/286 (51%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI   CK  ++  A++ LG MIE G+ P++VTYN L+ G C    L+          
Sbjct: 288 FNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLN---------- 337

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F  M  +G EPDV S++++++ YS+  + + ++   N M   G  P V TY S++
Sbjct: 338 SARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLL 397

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K +   G+++DA++L   M  +G+  ++ TY  F            AMKL+ ++K     
Sbjct: 398 KGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFK 457

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +  + + N LI       +++   E++  +   G  P++ +YT++IHG C + +  +A  
Sbjct: 458 L-EIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANV 516

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              +M   G  P  +T+ TL RG  +S+ L    +L  ++ ++ ++
Sbjct: 517 LIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVS 562



 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 160/299 (53%), Gaps = 19/299 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMI------ERGVEPNVVTYNVLLNGVCRRASLHPSER 55
           Y +LI G C    I++A +   EM+      E   +PNV+TYN++++G+C+        R
Sbjct: 177 YGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVG------R 230

Query: 56  FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA 115
            ++    A+++F+EM+ +G+ P + S++ ++H +  A + + S   L+ M ++G+ P + 
Sbjct: 231 EDE----AKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMV 286

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           T++ ++  LC  G++ +A++LLG M+ +G+ P   TYN   + +    D N A +L+  M
Sbjct: 287 TFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSM 346

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
              G C P++ SYN+LI  +    +++   +++N++   G  P++ +Y  L+ G+    K
Sbjct: 347 PSKG-CEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGK 405

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
             +A + F  M   G+     T+     GL ++D L    +L  +L  +S  F  E +N
Sbjct: 406 VDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTEL--KSSNFKLEIEN 462



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 148/293 (50%), Gaps = 10/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G C  +RI  A R    M + G  P+VVTY  L+ G+C   +++ + +  + + 
Sbjct: 142 YNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEML 201

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N    ++       +P+V +++I++    +  +   +      MK +G+ P++ +Y+S++
Sbjct: 202 NDISRYE----INCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLI 257

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+ E+++ LL EM+  G+ P   T+N              A KL   M E G+ 
Sbjct: 258 HGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGI- 316

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++ +YN LI  F  +  ++  RE++  +   G  PD+ SY +LI+G  +  K +EA +
Sbjct: 317 VPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMK 376

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFG 289
            + EM+  G  P  +T+++L +G+  +  +   ++L        + E S T+G
Sbjct: 377 LYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYG 429



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 135/275 (49%), Gaps = 15/275 (5%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A  F   M+     P++ ++N LL+G+ +    H S+ F         ++++MR+ G+  
Sbjct: 53  ALHFFHLMMRSTPTPSLSSFNHLLSGLAKIK--HYSQVFS--------LYNQMRLSGLSS 102

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           D  + +I+L+     ++ +        +  +G  P + TY++++K LC   RI +A  L 
Sbjct: 103 DRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLF 162

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL-----CVPNMHSYNILI 192
             M + G  P   TY    K   G  + N A+KL+++M  D       C PN+ +YNI++
Sbjct: 163 LRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIV 222

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                + R D  ++++ ++K  G+ P + SY  LIHG C   KW+E+ +   EM+++GL 
Sbjct: 223 DGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQ 282

Query: 253 PQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           P  VTF  L   L +   +   ++L   + E  I 
Sbjct: 283 PDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIV 317



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 126/288 (43%), Gaps = 51/288 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G+C +  ++ A      M  +G EP+V++YNVL+NG            + KT++
Sbjct: 323 YNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLING------------YSKTLK 370

Query: 62  --NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY-- 117
              A K+++EM + G  P+V ++  +L     A +   +    + MK  GI     TY  
Sbjct: 371 VEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGI 430

Query: 118 ---------------------------------SSVVKCLCSCGRIEDAEELLGEMVRNG 144
                                            + ++  LC  G++E A EL  ++   G
Sbjct: 431 FLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEG 490

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
             P+  TY      +      + A  L ++M+ +G C P++ +YN L+  F   N+++ V
Sbjct: 491 HEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANG-CTPDIITYNTLMRGFYESNKLEEV 549

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM-IEKGL 251
            ++ + +    + PD  + ++++  L + +K++E         I+KG+
Sbjct: 550 VQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLLPRFPIQKGV 597



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 8/151 (5%)

Query: 147 PSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           PS      FF  +   G   A  A+  +  M       P++ S+N L+     +     V
Sbjct: 30  PSPNPQIAFFLRHCKTGNVTATHALHFFHLMMRSTP-TPSLSSFNHLLSGLAKIKHYSQV 88

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             ++N ++ SGL  D  +  +L++ LC   + +E    F  ++ +G  P  VT+ TL +G
Sbjct: 89  FSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKG 148

Query: 265 LIQ----SDMLRTWRRLKK-KLDEESITFGS 290
           L      S+  R + R++K     + +T+G+
Sbjct: 149 LCMEHRISEATRLFLRMQKLGCTPDVVTYGT 179


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 10/272 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+L++G  + N+   A   +  M+ +G +P++VTY  ++NG+C+R    P         
Sbjct: 183 FTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRG--EPDL------- 233

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + ++M    IE DV  ++ ++    +      + D  N M+ KGI P V TY+ ++
Sbjct: 234 -ALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLI 292

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLC+ GR  DA  LL +M+   + P    +N     +        A KLY +M +   C
Sbjct: 293 SCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHC 352

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN LI  F    R++   E++ ++   GL  +  +YT LIHG  + +    A  
Sbjct: 353 FPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 412

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT 273
            F +M+  G+ P  +T+  L  GL  +  + T
Sbjct: 413 VFKQMVSDGVHPDIMTYNILLDGLCNNGNVET 444



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 134/268 (50%), Gaps = 12/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK    D+A   L +M +  +E +VV YN +++G+C+           K + 
Sbjct: 218 YGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKY----------KHMD 267

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +F++M  +GI+PDV +++ ++       +   +   L+ M EK I P +  +++++
Sbjct: 268 DAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALI 327

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
                 G++ +AE+L  EMV++  C P    YN   K +   K     M+++R+M + GL
Sbjct: 328 DAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGL 387

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            V N  +Y  LI  F      D  + ++  +   G+ PD+ +Y +L+ GLC     + A 
Sbjct: 388 -VGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETAL 446

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             F  M ++ +    VT+ T+   L ++
Sbjct: 447 VVFEYMQKRDMKLDIVTYTTMIEALCKA 474



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 130/267 (48%), Gaps = 14/267 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I G CK   +D A     +M  +G++P+V TYN L++ +C               
Sbjct: 252 IYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRW---------- 301

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKL--NFMKEKGICPTVATYS 118
            +A ++  +M  + I PD+  F+ ++  + +  +  +  +KL    +K K   P V  Y+
Sbjct: 302 SDASRLLSDMLEKNINPDLVFFNALIDAFVKEGK-LVEAEKLYDEMVKSKHCFPDVVAYN 360

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++K  C   R+E+  E+  EM + G+  +  TY      +   +D + A  +++QM  D
Sbjct: 361 TLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSD 420

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P++ +YNIL+        ++    ++  ++   +  D+ +YT +I  LC+  K ++
Sbjct: 421 GVH-PDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVED 479

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGL 265
               F  +  KG+ P  VT+ T+  G 
Sbjct: 480 GWDLFCSLSLKGVKPNVVTYTTMMSGF 506



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 114/231 (49%), Gaps = 15/231 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK  R++       EM +RG+  N VTY  L++G  +           +   
Sbjct: 359 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQ----------ARDCD 408

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA+ VF +M   G+ PD+ +++I+L         + +L    +M+++ +   + TY++++
Sbjct: 409 NAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMI 468

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDG 179
           + LC  G++ED  +L   +   GV P+  TY      +  +G K+   A  L+ +MKEDG
Sbjct: 469 EALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADA--LFVEMKEDG 526

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
             +PN  +YN LI   +         E+  +++  G   D  ++ ++ + L
Sbjct: 527 -PLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLVTNML 576



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 129/299 (43%), Gaps = 46/299 (15%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           ++D A    G+M++    P++V ++ LL+ + +        +F+  I   E    +M+  
Sbjct: 55  KLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKM------NKFDLVISLGE----QMQNL 104

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           GI  ++ ++SI ++ + R  Q  L+L  L  M + G  P++ T +S++   C   RI +A
Sbjct: 105 GISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEA 164

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             L+ +MV  G  P   T+            A+ A+ L  +M   G C P++ +Y  +I 
Sbjct: 165 VALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG-CQPDLVTYGAVIN 223

Query: 194 MF-------MALN----------------------------RMDMVREIWNDVKGSGLGP 218
                    +ALN                             MD   +++N ++  G+ P
Sbjct: 224 GLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKP 283

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           D+ +Y  LI  LC   +W +A +   +M+EK + P  V F  L    ++   L    +L
Sbjct: 284 DVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKL 342


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 138/285 (48%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLIYG+ K   + +A   L +M  +G +PNV +Y +L++G C+             I 
Sbjct: 386 YNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGK----------ID 435

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + +EM   G++P+   F+ ++  + + H+   +++    M  KG  P V T++S++
Sbjct: 436 EAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLI 495

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    I+ A  LL +M+  GV  +  TYN     +  R +   A KL  +M   G  
Sbjct: 496 SGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSL 555

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +  + +YN LI        +D  R ++  +   GL P   S  +LI+GLC     +EA +
Sbjct: 556 LDEI-TYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVE 614

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +  EM+ +G  P  VTF +L  GL ++  +     + +KL  E I
Sbjct: 615 FQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGI 659



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 148/303 (48%), Gaps = 16/303 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI+   K NR++ A + L EM   G  P+  T+N ++ G+C+         F++ I
Sbjct: 248 IYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCK---------FDR-I 297

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+ + M +RG  PD  ++  +++   +  +   + D    + +    PT   ++++
Sbjct: 298 NEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PTSVIFNTL 353

Query: 121 VKCLCSCGRIEDAEELLGEMVRN-GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +    + GR++DA+ +L +MV + G+ P   TYN     Y  +     A+++ R M+  G
Sbjct: 354 IHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKG 413

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C PN++SY IL+  F  L ++D    + N++   GL P+   +  LI   C++ +  EA
Sbjct: 414 -CKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 472

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
            + F EM  KG  P   TF +L  GL + D ++    L + +  E +   +   N     
Sbjct: 473 VEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 532

Query: 300 YRR 302
           + R
Sbjct: 533 FLR 535



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 129/260 (49%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ G+CK+ +ID A   L EM   G++PN V +N L++  C+          E  I 
Sbjct: 421 YTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCK----------EHRIP 470

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F EM  +G +PDV +F+ ++       + + +L  L  M  +G+     TY++++
Sbjct: 471 EAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLI 530

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G I++A +L+ EMV  G      TYN   K      + + A  L+ +M  DGL 
Sbjct: 531 NAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGL- 589

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+  S NILI        ++   E   ++   G  PD+ ++  LI+GLC   + ++   
Sbjct: 590 VPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLT 649

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F ++  +G+ P  VT+ TL
Sbjct: 650 MFRKLQAEGIPPDTVTYNTL 669



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 82/157 (52%), Gaps = 10/157 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G C+   +D A     +M+  G+ P+ ++ N+L+NG+CR   +  +  F+K   
Sbjct: 561 YNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQK--- 617

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                  EM +RG  PD+ +F+ +++   RA + +  L     ++ +GI P   TY++++
Sbjct: 618 -------EMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLM 670

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158
             LC  G + DA  LL E + +G  P+  T++   + 
Sbjct: 671 SWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQS 707



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 24/239 (10%)

Query: 31  EPNVVTYNVLL----NGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
           EP   +YNV+L    +G C +               A  VF +M  R I P + +F +V+
Sbjct: 173 EPTFKSYNVVLEILVSGNCHKV--------------AANVFYDMLSRKIPPTLFTFGVVM 218

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                 ++   +L  L  M + G  P    Y +++  L  C R+ +A +LL EM   G  
Sbjct: 219 KALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCV 278

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P AET+N            N A K+  +M   G   P+  +Y  L+     + R+D  ++
Sbjct: 279 PDAETFNDVILGLCKFDRINEAAKMVNRMLIRGF-TPDDITYGYLMNGLCKIGRVDAAKD 337

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-GLLPQKVTFETLYRG 264
           ++  +      P    +  LIHG     +  +A     +M+   G++P   T+ +L  G
Sbjct: 338 LFYRIP----KPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYG 392



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 2/206 (0%)

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSS 119
           +  +++  +M+  GI    + F  ++  Y +A  P  +   +  M+    C PT  +Y+ 
Sbjct: 122 KTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNV 181

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           V++ L S    + A  +  +M+   + P+  T+    K      + + A+ + R M + G
Sbjct: 182 VLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHG 241

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            CVPN   Y  LI      NR++   ++  ++   G  PD +++  +I GLC+  +  EA
Sbjct: 242 -CVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEA 300

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGL 265
            +    M+ +G  P  +T+  L  GL
Sbjct: 301 AKMVNRMLIRGFTPDDITYGYLMNGL 326



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/160 (20%), Positives = 68/160 (42%)

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
            +KG   +   Y  ++  L S G  +  + LL +M   G+      +    ++Y      
Sbjct: 97  SQKGYRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFP 156

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
               +L  +M+    C P   SYN+++ + ++ N   +   ++ D+    + P L ++ +
Sbjct: 157 GQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGV 216

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           ++  LC   +   A     +M + G +P  V ++TL   L
Sbjct: 217 VMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSL 256



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 7/191 (3%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC-PSAETYNCFFKEYRGRK 163
           MK++GI    + + S+++     G       L+ EM     C P+ ++YN   +      
Sbjct: 131 MKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGN 190

Query: 164 DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSY 223
               A  ++  M    +  P + ++ +++    A+N +D    +  D+   G  P+   Y
Sbjct: 191 CHKVAANVFYDMLSRKI-PPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIY 249

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR-----TWRRLK 278
             LIH L +  +  EA Q   EM   G +P   TF  +  GL + D +        R L 
Sbjct: 250 QTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLI 309

Query: 279 KKLDEESITFG 289
           +    + IT+G
Sbjct: 310 RGFTPDDITYG 320


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 140/277 (50%), Gaps = 16/277 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++LI G CK  +ID A     +MI  G  PNV+TYN L+NG+C+      +++ E+   
Sbjct: 363 FSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCK------ADKMER--- 413

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + + M  +G+ PDV ++S+++  + +A +   +L+ L+ M  +G  P V T++S++
Sbjct: 414 -AHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSII 472

Query: 122 KCLCSCGRIEDAEELLGEM-VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             LC   R  +A ++  +M +++G+ P   TY            A  A  L   M +   
Sbjct: 473 DGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPD--- 529

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+ +++N  I     L  +    +++N +    L PD  ++ +LI G C+   +++A 
Sbjct: 530 --PDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQAS 587

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
             F EM+ K L P  +TF  L  GL ++  +   R +
Sbjct: 588 ALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDI 624



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 139/283 (49%), Gaps = 14/283 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +   I G  K+  +  A +    M+E  + P+ VT+N+L+ G C+  +      FE+   
Sbjct: 535 FNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGN------FEQ--- 585

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F+EM  + ++PDV +F  ++    +A Q + + D L+ M   G+ P V TY+++V
Sbjct: 586 -ASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALV 644

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GRIE+A + L EMV +G  P + TY             + A++L  ++K  G  
Sbjct: 645 HGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGW- 703

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YNIL+       + +    +  ++ G G  PD+ +Y  LI  LC+    +EA +
Sbjct: 704 DPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARR 763

Query: 242 YFVEM---IEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
              +M   + +  +P  VT+  L  GL +   +   R L +++
Sbjct: 764 LHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEM 806



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 131/271 (48%), Gaps = 14/271 (5%)

Query: 2   YTSLIYGWCKINRIDMA-ERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y  ++   C+      A E F GEM   GV P +VTYN ++NG+C+   L          
Sbjct: 183 YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGA-------- 234

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               ++F+E+  RG  PDV +++ ++    +A   + +      M  +   P V TYS +
Sbjct: 235 --GMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVL 292

Query: 121 VKCLCSCGRIEDAEELLGEMVRNG--VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +  LC  GRI++A EL+ EM R    V P+  TYN F      +     A +L R +++ 
Sbjct: 293 INGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDG 352

Query: 179 GLCV-PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            L V P+  +++ LI       ++D    +++D+   G  P++ +Y  L++GLC+  K +
Sbjct: 353 SLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKME 412

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            A      M++KG+ P  +T+  L     ++
Sbjct: 413 RAHAMIESMVDKGVTPDVITYSVLVDAFCKA 443



 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 141/275 (51%), Gaps = 20/275 (7%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            +++LI G CK  + D A     +MI  G  PNVVTYNVL+NG+C+      +++ E+   
Sbjct: 857  FSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCK------TDKMER--- 907

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             A  + + M  +G+ PDV ++S+++  + +A     +L+ L+ M  +G  P V T++S++
Sbjct: 908  -AHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSII 966

Query: 122  KCLCSCGRIEDAEELLGEM-VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              LC   +  +A ++  +M +++G+ P   TY C   +   R    G  ++      D  
Sbjct: 967  DGLCKSDQSGEAFQMFDDMTLKHGLAPDKITY-CTLIDGLFRTGWAGQAEVLLDAMPD-- 1023

Query: 181  CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              P+ +++N  I     L+++  V    + +    L PD  ++ +LI G C+   +++A 
Sbjct: 1024 --PDTYAFNCCIN---GLSKLGDVSRALHRMLELELVPDKVTFNILIAGACKAGNFEQAS 1078

Query: 241  QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR-TW 274
              F EM+ K L P  +TF  L  GL ++  +  TW
Sbjct: 1079 ALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEATW 1113



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 139/307 (45%), Gaps = 51/307 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK N +        E++ERG  P+VVTYN L++ +C+   L  + R      
Sbjct: 219 YNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHG--- 275

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK------------- 108
                  +M  R   P+V ++S++++   +  +   + + +  M  K             
Sbjct: 276 -------DMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNS 328

Query: 109 ---GIC-----------------------PTVATYSSVVKCLCSCGRIEDAEELLGEMVR 142
              G+C                       P   T+S+++  LC CG+I++A  +  +M+ 
Sbjct: 329 FLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIA 388

Query: 143 NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202
            G  P+  TYN              A  +   M + G+  P++ +Y++L+  F   +R+D
Sbjct: 389 GGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGV-TPDVITYSVLVDAFCKASRVD 447

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM-IEKGLLPQKVTFETL 261
              E+ + +   G  P++ ++  +I GLC+  +  EA Q F +M ++ GL+P K+T+ TL
Sbjct: 448 EALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTL 507

Query: 262 YRGLIQS 268
             GL ++
Sbjct: 508 IDGLFRT 514



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 141/325 (43%), Gaps = 42/325 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG--VEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           Y+ LI G CK+ RID A   + EM  +   V PN++TYN  L+G+C+++    +    ++
Sbjct: 289 YSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRS 348

Query: 60  IRN---------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92
           +R+                           A  VFD+M   G  P+V +++ +++   +A
Sbjct: 349 LRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKA 408

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
            + + +   +  M +KG+ P V TYS +V   C   R+++A ELL  M   G  P+  T+
Sbjct: 409 DKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTF 468

Query: 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
           N           +  A +++  M      VP+  +Y  LI       R      + + + 
Sbjct: 469 NSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAM- 527

Query: 213 GSGLGPDLDSYTM--LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
                PD D+Y     I+GL +      A Q +  M+E  L+P KVTF  L  G  ++  
Sbjct: 528 -----PDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGN 582

Query: 271 LRTWRRL-----KKKLDEESITFGS 290
                 L      K L  + +TFG+
Sbjct: 583 FEQASALFEEMVAKNLQPDVMTFGA 607



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 119/257 (46%), Gaps = 12/257 (4%)

Query: 34  VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93
           V  YN++L  +CR           +T R  E    EM   G+ P + +++ +++   +++
Sbjct: 180 VADYNIVLQSLCRAG---------ETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSN 230

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           +    ++    + E+G  P V TY++++  LC  G +E+A  L G+M      P+  TY+
Sbjct: 231 ELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYS 290

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCV-PNMHSYNILIGMFMALNRMDMVREIWNDVK 212
                       + A +L ++M      V PN+ +YN  +      +      E+   ++
Sbjct: 291 VLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLR 350

Query: 213 GSGL--GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
              L   PD  +++ LI GLC+  +  EAC  F +MI  G +P  +T+  L  GL ++D 
Sbjct: 351 DGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADK 410

Query: 271 LRTWRRLKKKLDEESIT 287
           +     + + + ++ +T
Sbjct: 411 MERAHAMIESMVDKGVT 427



 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 13/99 (13%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            +   I G  K+  +    R L  M+E  + P+ VT+N+L+ G C+  +      FE+   
Sbjct: 1029 FNCCINGLSKLGDV---SRALHRMLELELVPDKVTFNILIAGACKAGN------FEQ--- 1076

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLD 100
             A  +F+EM  + ++PDV +F  ++    +A Q + + D
Sbjct: 1077 -ASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEATWD 1114


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 155/321 (48%), Gaps = 35/321 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           Y++LIYG+C   ++  A   L EM+ + + PNV TYN+L++ +C+               
Sbjct: 237 YSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVML 296

Query: 47  RASLHPSERFEKT----------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +A + P      T          ++ A+ VF+ M + G+ PDV +++I+++ + +     
Sbjct: 297 KACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVD 356

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+    M +K + P + TYSS++  LC  GRI    +L+ EM   G   +  TY+   
Sbjct: 357 EALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLI 416

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A+ L+ +MK+ G+  PN  ++ IL+       R+   +E++ D+   G 
Sbjct: 417 DGLCKNGHLDRAIALFNKMKDQGI-RPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGY 475

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM------ 270
             ++ +Y ++I G C++   +EA     +M + G +P  VTFE +   L + D       
Sbjct: 476 HLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIIIIALFKKDENGGNVG 535

Query: 271 --LRTWRRLK-KKLDEESITF 288
              + W  ++ KK +  SITF
Sbjct: 536 FDKKVWEIVEHKKGETPSITF 556



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 140/285 (49%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CKI     A + L ++  R  +PNVV Y+ +++ +C+           + + 
Sbjct: 167 YGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKY----------QLVS 216

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM V+GI  DV ++S +++ +    + + ++  LN M  K I P V TY+ +V
Sbjct: 217 EAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILV 276

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++++A+ +L  M++  V P   TY+     Y    +   A  ++  M   G+ 
Sbjct: 277 DALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGV- 335

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++H+Y ILI  F     +D    ++ ++    + P + +Y+ LI GLC+  +      
Sbjct: 336 TPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWD 395

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM ++G     +T+ +L  GL ++  L     L  K+ ++ I
Sbjct: 396 LIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGI 440



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 133/281 (47%), Gaps = 11/281 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY+++I   CK   +  A     EM  +G+  +VVTY+ L+ G C           E  +
Sbjct: 201 MYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFC----------IEGKL 250

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  + +EM ++ I P+V +++I++    +  + + +   L  M +  + P V TYS++
Sbjct: 251 KEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTL 310

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +        ++ A+ +   M   GV P   TY      +   K  + A+ L+++M +  +
Sbjct: 311 MDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNM 370

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VP + +Y+ LI       R+  V ++ +++   G   ++ +Y+ LI GLC+      A 
Sbjct: 371 -VPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAI 429

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
             F +M ++G+ P   TF  L  GL +   L+  + + + L
Sbjct: 430 ALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDL 470



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 130/299 (43%), Gaps = 46/299 (15%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C + +I      L ++++RG  P+ VT N L+ G+C +  +  +  F        
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFH------- 152

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
              D++  +G + +  S+  +++   +    + ++  L  +  +   P V  YS+++  L
Sbjct: 153 ---DKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDAL 209

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C    + +A  L  EM   G+     TY+     +        A+ L  +M    +  PN
Sbjct: 210 CKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTIN-PN 268

Query: 185 MHSYNILIG-----------------MFMALNRMDMV------------------REIWN 209
           +++YNIL+                  M  A  + D++                  + ++N
Sbjct: 269 VYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFN 328

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            +   G+ PD+ +YT+LI+G C+ +   EA   F EM +K ++P  VT+ +L  GL +S
Sbjct: 329 AMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKS 387



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 107/218 (49%), Gaps = 15/218 (6%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            +T+LI G C   +++ A  F  +++ +G + N V+Y  L+NGVC+              R
Sbjct: 999  FTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGD----------TR 1048

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNF-MKEKGICPTVATYSSV 120
             A K+  ++  R  +PDV  ++ ++    + HQ       L F M  KGI   V TY+++
Sbjct: 1049 AAIKLLRKIDGRLTKPDVVMYNTIIDALCK-HQLVSKAYGLFFEMNVKGISADVVTYNTL 1107

Query: 121  VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKED 178
            +   C  G++++A  LL +MV   + P+  TYN         G+   + ++ +  +M+++
Sbjct: 1108 IYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDN 1167

Query: 179  GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
            G C  N  ++ I+I      +  D V ++ +++   GL
Sbjct: 1168 G-CKANAVTFEIIISALFEKDENDKVEKLLHEMIARGL 1204



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 91/219 (41%), Gaps = 1/219 (0%)

Query: 47  RASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMK 106
            +  H      + + +A   F+ M      P +  F+ +L  +++      ++   + ++
Sbjct: 27  HSHFHSQPPSIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLE 86

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
            KGI P + T + ++ C C  G+I     +L ++++ G  P   T N   K    +    
Sbjct: 87  LKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVK 146

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            A+  + ++   G  + N  SY  LI     +       ++   + G    P++  Y+ +
Sbjct: 147 KALHFHDKLLAQGFQL-NQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTI 205

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           I  LC+ Q   EA   F EM  KG+    VT+ TL  G 
Sbjct: 206 IDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGF 244



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 91/197 (46%), Gaps = 3/197 (1%)

Query: 70   MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
            + ++GI+PD+ + +I+++ +    Q   +   L  + ++G  P   T+++++  LC  G+
Sbjct: 952  LELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQ 1011

Query: 130  IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG-LCVPNMHSY 188
            +  A     +++  G   +  +Y           D   A+KL R++  DG L  P++  Y
Sbjct: 1012 VNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKI--DGRLTKPDVVMY 1069

Query: 189  NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
            N +I        +     ++ ++   G+  D+ +Y  LI+G C   K KEA     +M+ 
Sbjct: 1070 NTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVL 1129

Query: 249  KGLLPQKVTFETLYRGL 265
            K + P   T+  L   L
Sbjct: 1130 KTINPNVRTYNILVDAL 1146



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 105/244 (43%), Gaps = 13/244 (5%)

Query: 28   RGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 87
            +G++P++ T N+L+N  C    +     F  +I        ++  RG  PD  +F+ +++
Sbjct: 955  KGIQPDLFTLNILINCFCHMGQI----TFNFSI------LAKILKRGYHPDTITFTTLIN 1004

Query: 88   VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
                  Q   +L   + +  +G      +Y +++  +C  G    A +LL ++      P
Sbjct: 1005 GLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKP 1064

Query: 148  SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
                YN         +  + A  L+ +M   G+   ++ +YN LI  F  + ++     +
Sbjct: 1065 DVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISA-DVVTYNTLIYGFCIVGKLKEAIGL 1123

Query: 208  WNDVKGSGLGPDLDSYTMLIHGLCEKQK--WKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
             N +    + P++ +Y +L+  LC++ K    E+     +M + G     VTFE +   L
Sbjct: 1124 LNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISAL 1183

Query: 266  IQSD 269
             + D
Sbjct: 1184 FEKD 1187



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 12/147 (8%)

Query: 1    MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
            MY ++I   CK   +  A     EM  +G+  +VVTYN L+ G C    L          
Sbjct: 1068 MYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKL---------- 1117

Query: 61   RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL--SLDKLNFMKEKGICPTVATYS 118
            + A  + ++M ++ I P+V +++I++    +  +  L  SL  L+ M++ G      T+ 
Sbjct: 1118 KEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFE 1177

Query: 119  SVVKCLCSCGRIEDAEELLGEMVRNGV 145
             ++  L      +  E+LL EM+  G+
Sbjct: 1178 IIISALFEKDENDKVEKLLHEMIARGL 1204



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 1/157 (0%)

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
           S   ++DA      M+     P    +N     +   K  + A+ L  +++  G+  P++
Sbjct: 36  SIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGI-QPDL 94

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
            + NILI  F  + ++     +   +   G  PD  +   LI GLC K + K+A  +  +
Sbjct: 95  ITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDK 154

Query: 246 MIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           ++ +G    +V++ TL  G+ +    R   +L +K+D
Sbjct: 155 LLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKID 191



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 1/115 (0%)

Query: 168  AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
            A+ L  +++  G+  P++ + NILI  F  + ++     I   +   G  PD  ++T LI
Sbjct: 945  AVSLSHRLELKGI-QPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLI 1003

Query: 228  HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
            +GLC K +  +A  +  +++ +G    +V++ TL  G+ +    R   +L +K+D
Sbjct: 1004 NGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKID 1058


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 133/280 (47%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+    K  R D       +M+  G  PN  TY  LL  +C+      ++RFE+   
Sbjct: 20  YNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQ------AQRFEE--- 70

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  VF  M  +G  P+V S+SI++    R  +   + + LN M + G  P V TY S++
Sbjct: 71  -ARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLL 129

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++++A +L   MV  G  P    YN     +  + D   A +L+ +M E G C
Sbjct: 130 SGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKG-C 188

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P + +YN L+  F        V+ ++ D+   G  P++ ++  L+ G C+     EA +
Sbjct: 189 IPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHR 248

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            F+EM   G  P  V++ TL RG+         +RL +++
Sbjct: 249 LFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREM 288



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 135/295 (45%), Gaps = 26/295 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-------- 53
           Y+ LI G C+  ++D A   L EMI+ G +PNVVTY  LL+G+C+   L  +        
Sbjct: 90  YSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMV 149

Query: 54  ---------------ERFEK--TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                          + F K   +  A ++F+EM  +G  P V +++ +L  +SR  +  
Sbjct: 150 YRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFG 209

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
                   M  +G  P + T+++++   C  G + +A  L  EM   G  P   +YN   
Sbjct: 210 RVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLI 269

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           +    +   + A +L R+M   G+  P++ SYNILI  +     +D   +++ ++  SGL
Sbjct: 270 RGMCSKGKPHEAQRLLREMIRSGV-GPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGL 328

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
            PD  SY+ +I  LC   K   A   F +MI  G  P       L  GL + + L
Sbjct: 329 EPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERL 383



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 127/259 (49%), Gaps = 23/259 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI G+ K   +  A R   EM+E+G  P V TYN LL+G  R+             
Sbjct: 159 VYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFG--------- 209

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR------AHQPQLSLDKLNFMKEKGICPTV 114
              + +F +M  +G  P++ +F+ +L  + +      AH+  L       M+  G  P V
Sbjct: 210 -RVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLE------MRSLGCPPDV 262

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            +Y+++++ +CS G+  +A+ LL EM+R+GV P   +YN     Y      + A+KL+ +
Sbjct: 263 VSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYE 322

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           + + GL  P+  SY+ +I       ++     ++ D+  +G  PD      L+ GLC  +
Sbjct: 323 IPKSGL-EPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGE 381

Query: 235 KWKEACQYFVEMIEKGLLP 253
           +  E+C+ F  M++   +P
Sbjct: 382 RLTESCELFQAMVKFECVP 400



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 111/230 (48%), Gaps = 13/230 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L+ G+CK+  +  A R   EM   G  P+VV+YN L+ G+C +   H          
Sbjct: 230 FNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPH---------- 279

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++  EM   G+ PD+ S++I++  YS++     ++     + + G+ P   +YS+++
Sbjct: 280 EAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTII 339

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETY-NCFFKEYRGRKDANGAMKLYRQMKEDGL 180
            CLC  G++  A  +  +M+ NG  P A           RG +           +K +  
Sbjct: 340 DCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFE-- 397

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           CVP +  YN+L+       R D V EI++++   G  PD++   +++  L
Sbjct: 398 CVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETL 447



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 14/204 (6%)

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           S++ +L V +++ +        N M   G  P   TY  +++ LC   R E+A  +   M
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 141 VRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
              G  P+  +Y+       RG+K  + A +L  +M  DG   PN+ +Y  L+     + 
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQK-VDEAAELLNEMI-DGGHQPNVVTYGSLLSGLCKMG 136

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           ++    ++++ +   G  PD   Y +LI G  +K    EA + F EM+EKG +P   T+ 
Sbjct: 137 KLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYN 196

Query: 260 TLYRGL--------IQS---DMLR 272
           +L  G         +QS   DMLR
Sbjct: 197 SLLSGFSRKGEFGRVQSLFKDMLR 220


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 145/294 (49%), Gaps = 16/294 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLIYG+ K   + +A   L +M  +G +PNV +Y +L++G C+             I 
Sbjct: 392 YNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGK----------ID 441

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V +EM   G++P+   F+ ++  + + H+   +++    M  KG  P V T++S++
Sbjct: 442 EAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLI 501

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    I+ A  LL +M+  GV  +  TYN     +  R +   A KL  +M   G  
Sbjct: 502 SGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSP 561

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +  + +YN LI        +D  R ++  +   G  P   S  +LI+GLC     +EA +
Sbjct: 562 LDEI-TYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVE 620

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKKK-LDEESITFGS 290
           +  EM+ +G  P  VTF +L  GL ++    D L  +R+L+ + +  +++TF +
Sbjct: 621 FQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNT 674



 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 146/303 (48%), Gaps = 16/303 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI+   K NR++ A + L EM   G  P+  T+N ++ G+C+         F++ I
Sbjct: 254 IYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCK---------FDR-I 303

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+ + M +RG  PD  ++  +++   +  +   + D    + +    P +  ++++
Sbjct: 304 NEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PEIVIFNTL 359

Query: 121 VKCLCSCGRIEDAEELLGEMVRN-GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +    + GR++DA+ +L +MV + G+ P   TYN     Y        A+++   M+  G
Sbjct: 360 IHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKG 419

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C PN++SY IL+  F  L ++D    + N++   GL P+   +  LI   C++ +  EA
Sbjct: 420 -CKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 478

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
            + F EM  KG  P   TF +L  GL + D ++    L + +  E +   +   N     
Sbjct: 479 VEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 538

Query: 300 YRR 302
           + R
Sbjct: 539 FLR 541



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ G+CK+ +ID A   L EM   G++PN V +N L++  C+          E  I 
Sbjct: 427 YTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCK----------EHRIP 476

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F EM  +G +PDV +F+ ++       + + +L  L  M  +G+     TY++++
Sbjct: 477 EAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLI 536

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G I++A +L+ EMV  G      TYN   K      + + A  L+ +M  DG  
Sbjct: 537 NAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHA 596

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+ S NILI        ++   E   ++   G  PD+ ++  LI+GLC   + ++   
Sbjct: 597 PSNI-SCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLT 655

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F ++  +G+ P  VTF TL
Sbjct: 656 MFRKLQAEGIPPDTVTFNTL 675



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 135/282 (47%), Gaps = 12/282 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           ++ +LI+G+    R+D A+  L +M+   G+ P+V TYN L+ G  +          E  
Sbjct: 355 IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWK----------EGL 404

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +  A +V  +MR +G +P+V S++I++  + +  +   + + LN M   G+ P    ++ 
Sbjct: 405 VGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNC 464

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++   C   RI +A E+  EM R G  P   T+N          +   A+ L R M  +G
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEG 524

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           + V N  +YN LI  F+    +   R++ N++   G   D  +Y  LI GLC   +  +A
Sbjct: 525 V-VANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKA 583

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
              F +M+  G  P  ++   L  GL +S M+      +K++
Sbjct: 584 RSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEM 625



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 10/157 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G C+   +D A     +M+  G  P+ ++ N+L+NG+CR   +  +  F+K   
Sbjct: 567 YNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQK--- 623

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                  EM +RG  PD+ +F+ +++   RA + +  L     ++ +GI P   T+++++
Sbjct: 624 -------EMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLM 676

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158
             LC  G + DA  LL E + +G  P+  T++   + 
Sbjct: 677 SWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQS 713



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 103/239 (43%), Gaps = 24/239 (10%)

Query: 31  EPNVVTYNVLL----NGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
           EP   +YNV+L    +G C +               A  VF +M  R I P + +F +V+
Sbjct: 179 EPTFKSYNVVLEILVSGNCHKV--------------AANVFYDMLSRKIPPTLFTFGVVM 224

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
             +   ++   +L  L  M + G  P    Y +++  L  C R+ +A +LL EM   G  
Sbjct: 225 KAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCV 284

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P AET+N            N A K+  +M   G   P+  +Y  L+     + R+D  ++
Sbjct: 285 PDAETFNDVILGLCKFDRINEAAKMVNRMLIRGF-APDDITYGYLMNGLCKIGRVDAAKD 343

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-GLLPQKVTFETLYRG 264
           ++  +      P++  +  LIHG     +  +A     +M+   G++P   T+ +L  G
Sbjct: 344 LFYRIP----KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYG 398



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 96/206 (46%), Gaps = 2/206 (0%)

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSS 119
           +  +++  +M+  GI    + F  ++  Y +A  P  +   +  M+    C PT  +Y+ 
Sbjct: 128 KTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNV 187

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           V++ L S    + A  +  +M+   + P+  T+    K +    + + A+ L R M + G
Sbjct: 188 VLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHG 247

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            CVPN   Y  LI      NR++   ++  ++   G  PD +++  +I GLC+  +  EA
Sbjct: 248 -CVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEA 306

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGL 265
            +    M+ +G  P  +T+  L  GL
Sbjct: 307 AKMVNRMLIRGFAPDDITYGYLMNGL 332



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 7/191 (3%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC-PSAETYNCFFKEYRGRK 163
           MK++GI    + + S+++     G       L+ EM     C P+ ++YN   +      
Sbjct: 137 MKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGN 196

Query: 164 DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSY 223
               A  ++  M    +  P + ++ +++  F A+N +D    +  D+   G  P+   Y
Sbjct: 197 CHKVAANVFYDMLSRKI-PPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIY 255

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTW-----RRLK 278
             LIH L +  +  EA Q   EM   G +P   TF  +  GL + D +        R L 
Sbjct: 256 QTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLI 315

Query: 279 KKLDEESITFG 289
           +    + IT+G
Sbjct: 316 RGFAPDDITYG 326



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/150 (18%), Positives = 63/150 (42%)

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
            Y  ++  L + G  +  + LL +M   G+      +    ++Y          +L  +M
Sbjct: 113 VYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEM 172

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           +    C P   SYN+++ + ++ N   +   ++ D+    + P L ++ +++   C   +
Sbjct: 173 RNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNE 232

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
              A     +M + G +P  V ++TL   L
Sbjct: 233 IDSALSLLRDMTKHGCVPNSVIYQTLIHSL 262


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 141/293 (48%), Gaps = 26/293 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNG---------------VCR 46
           Y++LIYG+C + ++  A   L EM+ + + P+V TY +L++                V  
Sbjct: 485 YSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVML 544

Query: 47  RASLHPSERFEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +A + P      T+ N          A+ VF+ M + G+ PDV +++I+++ + ++    
Sbjct: 545 KACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVD 604

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+    M +K + P   TYSS+V  LC  GRI    +L+ EM   G      TYN   
Sbjct: 605 EALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLI 664

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A+ L+ +MK+ G+  PN  ++ IL+       R+   +E++ D+   G 
Sbjct: 665 DGLCKNGHLDKAIALFNKMKDQGI-RPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGY 723

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
             D+  Y ++I+G C++   +EA     +M E G +P  VTF+ +   L + D
Sbjct: 724 HLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKD 776



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 138/285 (48%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CKI     A + L ++  R  +PNV  Y+ +++ +C+           + + 
Sbjct: 415 YATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKY----------QLVS 464

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM V+GI  DV ++S +++ +    + + ++  LN M  K I P V TY+ +V
Sbjct: 465 EAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILV 524

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G++++A+ +L  M++  V P   TYN     Y    +   A  ++  M   G+ 
Sbjct: 525 DALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGV- 583

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++H+Y ILI  F     +D    ++ ++    + PD  +Y+ L+ GLC+  +      
Sbjct: 584 TPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWD 643

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM ++G     +T+ +L  GL ++  L     L  K+ ++ I
Sbjct: 644 LIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGI 688



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 136/298 (45%), Gaps = 45/298 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G C+I     A +FL ++  R  +PNV  YN +++ +C+           + + 
Sbjct: 101 YATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKY----------QLVS 150

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM V+GI  +V ++S +++ +    + + +L  LN M  K I P V TY+ +V
Sbjct: 151 EAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILV 210

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++++A+ +L  M++  V  +  TY+     Y    +   A  ++  M   G+ 
Sbjct: 211 DALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGV- 269

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGS--------------------------- 214
            P++HSYNI+I  F  + R+D    ++ ++  S                           
Sbjct: 270 TPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFAKMKHYSTAVSL 329

Query: 215 -------GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
                  G+ PDL +  +LI+  C   +         +++++G  P  VT  TL +GL
Sbjct: 330 SHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGL 387



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 133/281 (47%), Gaps = 11/281 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY+++I   CK   +  A     EM  +G+  +VVTY+ L+ G C    L          
Sbjct: 449 MYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKL---------- 498

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  + +EM ++ I PDV +++I++    +  + + +   L  M +  + P V TY+++
Sbjct: 499 KEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTL 558

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +        ++ A+ +   M   GV P   TY      +   K  + A+ L+++M +  +
Sbjct: 559 MNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNM 618

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VP+  +Y+ L+       R+  V ++ ++++  G   D+ +Y  LI GLC+     +A 
Sbjct: 619 -VPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAI 677

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
             F +M ++G+ P   TF  L  GL +   L+  + + + L
Sbjct: 678 ALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDL 718



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 135/327 (41%), Gaps = 68/327 (20%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           Y++LIYG+C + ++  A   L  M+ + + PNV TYN+L++ +C+   +  ++       
Sbjct: 171 YSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVML 230

Query: 60  -----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  ++ A+ VF+ M + G+ PDV S++I+++ + +  +  
Sbjct: 231 KACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKR-- 288

Query: 97  LSLDK-LNFMKE-------------------------------------KGICPTVATYS 118
             +DK LN  KE                                     KGI P + T +
Sbjct: 289 --VDKALNLFKEMILSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLN 346

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++ C C  G+I     +L ++++ G  PS  T N   K    +     A+  + ++   
Sbjct: 347 ILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 406

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G  + N  SY  LI     +       ++   + G    P+++ Y+ +I  LC+ Q   E
Sbjct: 407 GFQL-NQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSE 465

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGL 265
           A   F EM  KG+    VT+ TL  G 
Sbjct: 466 AYGLFSEMTVKGISADVVTYSTLIYGF 492



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 132/307 (42%), Gaps = 27/307 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF---- 56
           MY ++I   CK   +  A     EM  +G+  NVVTY+ L+ G C    L  +       
Sbjct: 135 MYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVM 194

Query: 57  ---------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                E  ++ A+ V   M    ++ +V ++S ++  Y   ++ 
Sbjct: 195 VLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEV 254

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + +    N M   G+ P V +Y+ ++   C   R++ A  L  EM+ +   P  + +N  
Sbjct: 255 KKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQ-FNKI 313

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +   K  + A+ L  +++  G+  P++ + NILI  F  + ++     +   +   G
Sbjct: 314 LDSFAKMKHYSTAVSLSHRLELKGI-QPDLFTLNILINCFCHMGQITFGFSVLAKILKRG 372

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
             P   +   LI GLC K + K+A  +  +++ +G    +V++ TL  G+ +    R   
Sbjct: 373 YPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAI 432

Query: 276 RLKKKLD 282
           +L +K+D
Sbjct: 433 KLLRKID 439



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 90/179 (50%), Gaps = 10/179 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SL+ G CK  RI      + EM +RG   +V+TYN L++G+C+   L           
Sbjct: 625 YSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLD---------- 674

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F++M+ +GI P+  +F+I+L    +  + + + +    +  KG    V  Y+ ++
Sbjct: 675 KAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMI 734

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              C  G +E+A  +L +M  NG  P+A T++        + + + A KL RQM   GL
Sbjct: 735 YGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARGL 793



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 122/291 (41%), Gaps = 29/291 (9%)

Query: 22  LGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI--------------------- 60
           L ++++RG  P+ VT N L+ G+C +  +  +  F   +                     
Sbjct: 51  LTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCR 110

Query: 61  ----RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
               R A K   ++  R  +P+V  ++ ++    +      +    + M  KGI   V T
Sbjct: 111 IGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVT 170

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           YS+++   C  G++++A  LL  MV   + P+  TYN              A  +   M 
Sbjct: 171 YSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVML 230

Query: 177 EDGLCV-PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           +   CV  N+ +Y+ L+  +  +  +   + ++N +   G+ PD+ SY ++I+G C+ ++
Sbjct: 231 KA--CVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKR 288

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             +A   F EMI     P  + F  +     +     T   L  +L+ + I
Sbjct: 289 VDKALNLFKEMILSR-FPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGI 338



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 14/208 (6%)

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           +SL  L  + ++G  P   T ++++K LC  G++++A     +++  G   +  +Y    
Sbjct: 46  VSLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLI 105

Query: 157 KEYRGRKDANGAMKLYRQMKEDG-LCVPNMHSYNILIGMFMALNRMDMVRE---IWNDVK 212
                  D   A+K  R++  DG L  PN+  YN +I    AL +  +V E   +++++ 
Sbjct: 106 NGVCRIGDTRAAIKFLRKI--DGRLAKPNVEMYNTIID---ALCKYQLVSEAYGLFSEMT 160

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
             G+  ++ +Y+ LI+G C   K KEA      M+ K + P   T+  L   L +   ++
Sbjct: 161 VKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVK 220

Query: 273 TWRR-----LKKKLDEESITFGSEFQNY 295
             +      LK  +    IT+ +    Y
Sbjct: 221 EAKSVLAVMLKACVKSNVITYSTLMDGY 248



 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 10/75 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  +IYG CK   ++ A   L +M E G  PN VT+++++N + ++      +  +K  
Sbjct: 729 IYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKK------DENDK-- 780

Query: 61  RNAEKVFDEMRVRGI 75
             AEK+  +M  RG+
Sbjct: 781 --AEKLLRQMIARGL 793


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 144/299 (48%), Gaps = 11/299 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I   CK  ++D AER L EMI +G+ P+ V Y  L++G C+  +          I+
Sbjct: 48  YNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGN----------IQ 97

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+FDEM  + I PD  +++ V+    R  +   +    N M  +G+ P   TY++++
Sbjct: 98  AAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLI 157

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +E A  L  +MV++G+ P+  TY             + A +L  +M   GL 
Sbjct: 158 DGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQ 217

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N+ +YN L+        +    ++  +++ +G+ PD  ++T L+   C+  +  +A +
Sbjct: 218 L-NICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHE 276

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
              EM+++GL P  +TF  L  G   S ML    RL   + E+ I   +   N   K Y
Sbjct: 277 LLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQY 335



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 143/282 (50%), Gaps = 12/282 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I G+C    +    + + EM  +G++PN+ TYN ++  +C+             + 
Sbjct: 13  YSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK----------VD 62

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE+V  EM  +GI PD   ++ ++  + +    Q +    + M+++ I P    Y++V+
Sbjct: 63  DAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVI 122

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC CG++ +A+++  +M   GV P   TY      Y    +   A  L+ QM + GL 
Sbjct: 123 CGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGL- 181

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  L      L ++D   E+ +++ G GL  ++ +Y  L++GLC+    ++A +
Sbjct: 182 TPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVK 241

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS-DMLRTWRRLKKKLD 282
              EM   G+ P  +TF TL     ++ +M++    L++ LD
Sbjct: 242 LMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLD 283



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 135/263 (51%), Gaps = 11/263 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+LI G+CK+  I  A +   EM ++ + P+ + Y  ++ G+CR   +          
Sbjct: 82  VYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMME-------- 133

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+KVF++M  RG+EPD  +++ ++  Y ++ + + +    N M + G+ P V TY+++
Sbjct: 134 --ADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTAL 191

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              LC  G+++ A ELL EM   G+  +  TYN          +   A+KL  +M+  G+
Sbjct: 192 ADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGM 251

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  ++  L+  +     M    E+  ++   GL P + ++ +L++G C     ++  
Sbjct: 252 -YPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGE 310

Query: 241 QYFVEMIEKGLLPQKVTFETLYR 263
           +    M+EKG++P   T+ +L +
Sbjct: 311 RLLAWMLEKGIMPNTTTYNSLMK 333



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 136/254 (53%), Gaps = 19/254 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L  G CK+ ++D A   L EM  +G++ N+ TYN L+NG+C+  +          IR
Sbjct: 188 YTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGN----------IR 237

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ +EM V G+ PD  +F+ ++  Y +  +   + + L  M ++G+ PTV T++ ++
Sbjct: 238 QAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLM 297

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +ED E LL  M+  G+ P+  TYN   K+Y  R +     ++Y+ M   G+ 
Sbjct: 298 NGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGV- 356

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIW---NDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
           +P+ ++YNILI G   A N    ++E W    ++   G      SY  +I G  +K+K  
Sbjct: 357 MPDSNTYNILIKGHCKARN----MKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKIS 412

Query: 238 EACQYFVEMIEKGL 251
           EA + F EM  +G+
Sbjct: 413 EARELFEEMRREGM 426



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 1/208 (0%)

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           M+ RG  PDV S+S V++ Y    + Q  L  +  M+ KG+ P + TY+S++  LC  G+
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           ++DAE +L EM+  G+ P    Y      +    +   A KL+ +M++  + VP+  +Y 
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRI-VPDFIAYT 119

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            +I       +M    +++N +   G+ PD  +YT LI G C+  + ++A     +M++ 
Sbjct: 120 AVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQS 179

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           GL P  VT+  L  GL +   + T   L
Sbjct: 180 GLTPNVVTYTALADGLCKLGQVDTANEL 207



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 25/202 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           +T+L+  +CK   +  A   L EM++RG++P V+T+NVL+NG C    L   ER      
Sbjct: 258 FTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWML 317

Query: 57  EKTI--------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           EK I                    R   +++  M  RG+ PD  +++I++  + +A   +
Sbjct: 318 EKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMK 377

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      M EKG   T ++Y+S++K      +I +A EL  EM R G+   AE YN F 
Sbjct: 378 EAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFV 437

Query: 157 KEYRGRKDANGAMKLYRQMKED 178
               G  +   A++L  +  E+
Sbjct: 438 DISYGEGNMETALELCDEAIEN 459


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 132/268 (49%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+   CK  ++D A   L  M  RG+ PN+ TYN L++G+             + + 
Sbjct: 370 YTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNL----------RRLD 419

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F+ M   G+ P   S+ + +  Y +   P+ +LD    MK++GI P++A  ++ +
Sbjct: 420 EALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASL 479

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GRI +A+++  ++   G+ P + TYN   K Y      + A KL  +M  +G C
Sbjct: 480 YSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEG-C 538

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++   N LI       R+D   +++  +K   L P + +Y +LI GL ++ K  +A  
Sbjct: 539 EPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALD 598

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            F  M E G  P  VTF  L   L ++D
Sbjct: 599 LFGSMKESGCPPNTVTFNALLDCLCKND 626



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 142/292 (48%), Gaps = 16/292 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI   C   ++D A+    +M     +P++VTY  L++       L   +RF     
Sbjct: 300 YTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRF----- 354

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                + EM   G  PDV +++I++    ++ +   + D L+ M+ +GI P + TY++++
Sbjct: 355 -----WSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLI 409

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L +  R+++A EL   M   GV P+A +Y  F   Y    D   A+  + +MK+ G+ 
Sbjct: 410 SGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGI- 468

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ + N  +     + R+   ++I+ND+   GL PD  +Y M++    +  +  +A +
Sbjct: 469 MPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATK 528

Query: 242 YFVEMIEKGLLPQKVT----FETLYRGLIQSDMLRTWRRLKK-KLDEESITF 288
              EM+ +G  P  +      +TLY+     +  + + RLK  KL    +T+
Sbjct: 529 LLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTY 580



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 139/288 (48%), Gaps = 25/288 (8%)

Query: 2   YTSLIY-----GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF 56
           Y  LIY     G+CK      A +    MI  G++P++ TY+ L+  + RR       R 
Sbjct: 195 YNGLIYFLLQPGFCK-----EALKVYKRMISEGLKPSMKTYSALMVALGRR-------RD 242

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
             TI +   + +EM   G+ P++ +++I + V  RA +   +   L  M+++G  P V T
Sbjct: 243 TGTIMD---LLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVT 299

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+ ++  LC+ G+++ A+EL  +M  +   P   TY     ++    D     + + +M+
Sbjct: 300 YTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEME 359

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
            DG   P++ +Y IL+       ++D   ++ + ++  G+ P+L +Y  LI GL   ++ 
Sbjct: 360 ADGY-APDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRL 418

Query: 237 KEACQYFVEMIEKGLLPQK---VTFETLYRGLIQSD-MLRTWRRLKKK 280
            EA + F  M   G+ P     V F   Y  L   +  L T+ ++KK+
Sbjct: 419 DEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKR 466



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 131/285 (45%), Gaps = 26/285 (9%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHP--------- 52
            Y  L+    K  RID       EM+ RG +PN++T+N++++ + +  S++          
Sbjct: 826  YNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEII 885

Query: 53   SERFEKT----------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            S  F  T                   A K+F+EM     +P+   ++I+++ + +A    
Sbjct: 886  SGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVN 945

Query: 97   LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++ D    M ++GI P + +Y+ +V+CL   GR++DA     E+   G+ P   +YN   
Sbjct: 946  IACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMI 1005

Query: 157  KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                  +    A+ L+ +MK  G+  P +++YN LI  F     +D   +++ +++  GL
Sbjct: 1006 NGLGKSRRLEEALSLFSEMKNRGIS-PELYTYNALILHFGNAGMVDQAGKMFEELQFMGL 1064

Query: 217  GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
             P++ +Y  LI G  +      A   F +M+  G  P   TF  L
Sbjct: 1065 EPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQL 1109



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 131/291 (45%), Gaps = 27/291 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKT- 59
           Y +LI G   + R+D A      M   GV P   +Y + ++   +      + + FEK  
Sbjct: 405 YNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMK 464

Query: 60  -----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  IR A+ +F+++   G+ PD  ++++++  YS+A Q  
Sbjct: 465 KRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQID 524

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L  M  +G  P +   +S++  L   GR+++A ++ G +    + P+  TYN   
Sbjct: 525 KATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILI 584

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      A+ L+  MKE G C PN  ++N L+      + +D+  +++  +     
Sbjct: 585 TGLGKEGKLLKALDLFGSMKESG-CPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNC 643

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            PD+ +Y  +I+GL ++ +   A  ++ +M +K L P  VT  TL  G+++
Sbjct: 644 SPDVLTYNTIIYGLIKEGRAGYAFWFYHQM-KKFLSPDHVTLYTLLPGVVK 693



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 27/298 (9%)

Query: 5    LIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGV--CRRASLHPSERFEKTIR 61
            LI   CK  +   A++   +  +  G  P   +YN L++G+  C                
Sbjct: 758  LIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCN------------ITE 805

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             A K+F EM+  G  P++ +++++L  + ++ +     +  N M  +G  P + T++ ++
Sbjct: 806  AALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIII 865

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              L     I  A +L  E++     P+  TY            +  AMK++ +M  D  C
Sbjct: 866  SALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMP-DYQC 924

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             PN   YNILI  F     +++  +++  +   G+ PDL SYT+L+  L    +  +A  
Sbjct: 925  KPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVH 984

Query: 242  YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
            YF E+   GL P  V++  +  GL +S      RRL     EE+++  SE +N    P
Sbjct: 985  YFEELKLTGLDPDTVSYNLMINGLGKS------RRL-----EEALSLFSEMKNRGISP 1031



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 1/231 (0%)

Query: 55  RFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV 114
           R    + +   VFD M+ + I  +  ++  +    S     + +   L  M++ G     
Sbjct: 133 RVHGRVEDMAFVFDLMQKQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNA 192

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            +Y+ ++  L   G  ++A ++   M+  G+ PS +TY+        R+D    M L  +
Sbjct: 193 YSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEE 252

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M+  GL  PN+++Y I I +     R+D    I   ++  G GPD+ +YT+LI  LC   
Sbjct: 253 METLGL-RPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAG 311

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           K  +A + + +M      P  VT+ TL         L T +R   +++ + 
Sbjct: 312 KLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADG 362



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 122/303 (40%), Gaps = 45/303 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G  K  ++  A    G M E G  PN VT+N LL+ +C+  +          + 
Sbjct: 580 YNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDA----------VD 629

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVL--------------------------HVYSRAHQP 95
            A K+F  M +    PDV +++ ++                          HV      P
Sbjct: 630 LALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKFLSPDHVTLYTLLP 689

Query: 96  QLSLDK---------LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
            +  D          + F+ + G+  +   +  +++C+     IE+A      +V N +C
Sbjct: 690 GVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSIC 749

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
                     +    +K A  A KL+ +  +     P   SYN L+   +  N  +   +
Sbjct: 750 QDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALK 809

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++ ++K +G  P++ +Y +L+    + ++  E  + + EM+ +G  P  +T   +   L+
Sbjct: 810 LFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALV 869

Query: 267 QSD 269
           +S+
Sbjct: 870 KSN 872



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 18/221 (8%)

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           L V+ R        D    M+++ I     TY ++ K L   G I  A   LG+M + G 
Sbjct: 132 LRVHGRVEDMAFVFD---LMQKQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGF 188

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR---MD 202
             +A +YN              A+K+Y++M  +GL  P+M +Y+ L+   +AL R     
Sbjct: 189 VLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGL-KPSMKTYSALM---VALGRRRDTG 244

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
            + ++  +++  GL P++ +YT+ I  L    +  +A      M ++G  P  VT+  L 
Sbjct: 245 TIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLI 304

Query: 263 RGLIQSDMLRTWRRLKKKLDEES--------ITFGSEFQNY 295
             L  +  L   + L  K+   S        IT  S+F NY
Sbjct: 305 DALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNY 345


>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
 gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 453

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 126/234 (53%), Gaps = 11/234 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++ GWC I R   A   L EM+ERG+ PN+ TYN +L G  R             IR
Sbjct: 198 YNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQ----------IR 247

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A + F EM+ R  E DV +++ V+H +  A + + + +  + M  +G+ P+VATY++++
Sbjct: 248 HAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMI 307

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC    +E+A  +  EMVR G  P+  TYN   +      + +   +L ++M+ +G C
Sbjct: 308 QVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEG-C 366

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            PN  +YN++I  +   + ++    ++  +      P+LD+Y +LI G+  +++
Sbjct: 367 EPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKR 420



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 125/266 (46%), Gaps = 14/266 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +++   CK  R++ A      +  R    + VTYNV+LNG C            K   
Sbjct: 164 FNTILDVLCKSKRVEKAYELFRALRGR-FSVDTVTYNVILNGWC----------LIKRTP 212

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V  EM  RGI P++T+++ +L  + RA Q + + +    MK++     V TY++VV
Sbjct: 213 KALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVV 272

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G I+ A  +  EM+R GV PS  TYN   +    + +   A+ ++ +M   G  
Sbjct: 273 HGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGY- 331

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            PN+ +YN+LI G+F A        E+   ++  G  P+  +Y M+I    E  + ++A 
Sbjct: 332 EPNVTTYNVLIRGLFHA-GEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKAL 390

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLI 266
             F +M     LP   T+  L  G+ 
Sbjct: 391 GLFEKMGSGDCLPNLDTYNILISGMF 416



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 108/234 (46%), Gaps = 4/234 (1%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A K+F  M   G   D+ SF+ +L V  ++ + + + +    ++ +    TV TY+ ++ 
Sbjct: 145 AVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTV-TYNVILN 203

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C   R   A E+L EMV  G+ P+  TYN   K +        A + + +MK+   C 
Sbjct: 204 GWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRD-CE 262

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
            ++ +Y  ++  F     +   R +++++   G+ P + +Y  +I  LC+K   + A   
Sbjct: 263 IDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVM 322

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYH 296
           F EM+ +G  P   T+  L RGL  +        L ++++ E       FQ Y+
Sbjct: 323 FEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCE--PNFQTYN 374



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 10/131 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I   CK + ++ A     EM+ RG EPNV TYNVL+ G+      H  E       
Sbjct: 303 YNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGL-----FHAGE-----FS 352

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             E++   M   G EP+  ++++++  YS   + + +L     M      P + TY+ ++
Sbjct: 353 RGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILI 412

Query: 122 KCLCSCGRIED 132
             +    R ED
Sbjct: 413 SGMFVRKRSED 423


>gi|297842515|ref|XP_002889139.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334980|gb|EFH65398.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 482

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 144/281 (51%), Gaps = 12/281 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ GW K   +  A     EM++ G  P++VTY+++++ +C+             + 
Sbjct: 205 YSILLEGWGKEPNLPKAREVFREMVDAGSLPDIVTYSIMVDILCKAGR----------VD 254

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M     +P    +S+++H Y    + + ++D    M+  G+   VA ++S++
Sbjct: 255 EALGIVRSMDPSICKPTTFIYSVLVHTYGTETRLEEAVDTFLEMERSGMKADVAVFNSLI 314

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R+++   +L EM   GV P++++ N   +    R + + A  ++R+M +  +C
Sbjct: 315 GAFCKTNRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIDRGEKDEAFDVFRKMIK--VC 372

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y ++I MF     M+   ++W  ++  G+ P + ++++LI+GLCE+   ++AC 
Sbjct: 373 EPDADTYTMMIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEEPNTQKACV 432

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
              EMIE G+ P   TF  L + L++ D     + L +K++
Sbjct: 433 LLEEMIEMGIRPSGATFGRLRQLLLKEDREDVLKFLNEKMN 473



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 130/293 (44%), Gaps = 50/293 (17%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           + +  ++D A      M +  + PN+V +N LL+ +C+           K +R A+++F+
Sbjct: 143 YARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCK----------SKNVRKAQEIFE 192

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNF--MKEKGICPTVATYSSVVKCLCS 126
            MR R   PD  ++SI+L  + +  +P L   +  F  M + G  P + TYS +V  LC 
Sbjct: 193 NMRDR-FTPDSKTYSILLEGWGK--EPNLPKAREVFREMVDAGSLPDIVTYSIMVDILCK 249

Query: 127 CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH 186
            GR+++A  ++  M  +   P+   Y+     Y        A+  + +M+  G+   ++ 
Sbjct: 250 AGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTETRLEEAVDTFLEMERSGMKA-DVA 308

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLG----------------------------- 217
            +N LIG F   NRM  V  +  ++K  G+                              
Sbjct: 309 VFNSLIGAFCKTNRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIDRGEKDEAFDVFRKM 368

Query: 218 -----PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
                PD D+YTM+I   CEK++ + A + +  M +KG+ P   TF  L  GL
Sbjct: 369 IKVCEPDADTYTMMIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGL 421



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 107/217 (49%), Gaps = 2/217 (0%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           +V +F IV+  Y+RA +   ++   N M++  + P +  ++ ++  LC    +  A+E+ 
Sbjct: 132 NVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEIF 191

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
             M R+   P ++TY+   + +    +   A +++R+M + G  +P++ +Y+I++ +   
Sbjct: 192 ENM-RDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMVDAG-SLPDIVTYSIMVDILCK 249

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
             R+D    I   +  S   P    Y++L+H    + + +EA   F+EM   G+      
Sbjct: 250 AGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTETRLEEAVDTFLEMERSGMKADVAV 309

Query: 258 FETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           F +L     +++ ++   R+ K++  + +T  S+  N
Sbjct: 310 FNSLIGAFCKTNRMKNVYRVLKEMKSKGVTPNSKSCN 346



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 81/154 (52%), Gaps = 15/154 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ SLI  +CK NR+    R L EM  +GV PN  + N++L         H  +R EK  
Sbjct: 309 VFNSLIGAFCKTNRMKNVYRVLKEMKSKGVTPNSKSCNIILR--------HLIDRGEK-- 358

Query: 61  RNAEKVFDEMR--VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
              ++ FD  R  ++  EPD  ++++++ ++    + + +     +M++KG+ P++ T+S
Sbjct: 359 ---DEAFDVFRKMIKVCEPDADTYTMMIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFS 415

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
            ++  LC     + A  LL EM+  G+ PS  T+
Sbjct: 416 VLINGLCEEPNTQKACVLLEEMIEMGIRPSGATF 449


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 146/294 (49%), Gaps = 16/294 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LIYG CK ++   AE +LG+++  G+EP+  TYN L+ G C+   +  +ER    + 
Sbjct: 289 YNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERI---LV 345

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA  VF+     G  PD  ++  ++       +   +L   N    KGI P V  Y++++
Sbjct: 346 NA--VFN-----GFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLI 398

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K L + G I +A +L  EM   G+ P  +T+N            + A  L + M   G  
Sbjct: 399 KGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGY- 457

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ ++NILI  +    +M+   EI + +  +G+ PD+ +Y  L++GLC+  K+++  +
Sbjct: 458 FPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVME 517

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGS 290
            +  M+EKG  P   TF  L   L +   L     L      K ++ +++TFG+
Sbjct: 518 TYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGT 571



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 133/293 (45%), Gaps = 45/293 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G      I  A +   EM E+G+ P V T+N+L+NG+C+             +
Sbjct: 393 LYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGC----------V 442

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A+ +   M  +G  PD+ +F+I++H YS   + + +L+ L+ M + G+ P V TY+S+
Sbjct: 443 SDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSL 502

Query: 121 VKCLCSCGRIEDAEE-----------------------------------LLGEMVRNGV 145
           +  LC   + ED  E                                   LL EM    V
Sbjct: 503 LNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSV 562

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P A T+      +    D +GA  L+R+M+E  +   +  +YNI+I  F     + M  
Sbjct: 563 NPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAE 622

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
           +++ ++    LGPD  +Y +++ G C+        ++ +EM+E G +P   T 
Sbjct: 623 KLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTL 675



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 119/247 (48%), Gaps = 11/247 (4%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           EP V +YN ++      + L  S  F++    A KV+  MR RGI PDV SF+I +  + 
Sbjct: 108 EPTVFSYNAIM------SILVDSGYFDQ----AHKVYMRMRDRGITPDVYSFTIRMKSFC 157

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
           R  +P  +L  LN M  +G    V  Y +VV         ++  EL G+M+ +GV     
Sbjct: 158 RTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASGVSLCLS 217

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           T+N        + D     KL  ++ + G+ +PN+ +YN  I        +D    +   
Sbjct: 218 TFNKLLHVLCKKGDVKECEKLLDKVIKRGV-LPNLFTYNFFIQGLCQKGELDAAVRMVGR 276

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           +   G  PD+ +Y  LI+GLC+  K++EA  Y  +++ +GL P   T+ TL  G  +  M
Sbjct: 277 LIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGM 336

Query: 271 LRTWRRL 277
           ++   R+
Sbjct: 337 VQLAERI 343



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 126/263 (47%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L++  CK   +   E+ L ++I+RGV PN+ TYN  + G+C++  L      +  +R
Sbjct: 219 FNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGEL------DAAVR 272

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++ D+    G +PDV +++ +++   +  + Q +   L  +  +G+ P   TY++++
Sbjct: 273 MVGRLIDQ----GPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLI 328

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G ++ AE +L   V NG  P   TY           + N A+ L+ +    G+ 
Sbjct: 329 AGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGI- 387

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+  YN LI        +    ++ +++   GL P++ ++ +L++GLC+     +A  
Sbjct: 388 KPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADG 447

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
               MI KG  P   TF  L  G
Sbjct: 448 LVKVMISKGYFPDIFTFNILIHG 470



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 91/197 (46%), Gaps = 1/197 (0%)

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           Y R  + Q +++    M      PTV +Y++++  L   G  + A ++   M   G+ P 
Sbjct: 86  YGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPD 145

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             ++    K +      + A++L   M   G C  N+ +Y  ++G F   N  D   E++
Sbjct: 146 VYSFTIRMKSFCRTSRPHAALRLLNNMSSQG-CEMNVVAYCTVVGGFYEENFKDEGYELF 204

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             +  SG+   L ++  L+H LC+K   KE  +   ++I++G+LP   T+    +GL Q 
Sbjct: 205 GKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQK 264

Query: 269 DMLRTWRRLKKKLDEES 285
             L    R+  +L ++ 
Sbjct: 265 GELDAAVRMVGRLIDQG 281



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 26/174 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEK-- 58
           +  L+   C+ +++D A   L EM  + V P+ VT+  L++G C+   L  +   F K  
Sbjct: 534 FNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKME 593

Query: 59  -----------------------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                   +  AEK+F EM  R + PD  ++ +++  + +    
Sbjct: 594 EVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNV 653

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
            L    L  M E G  P++ T   V+ CLC   R+ +A  ++  MV+ G+ P A
Sbjct: 654 DLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEA 707



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 3/178 (1%)

Query: 94  QPQLSLDKLNFM-KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN-GVCPSAET 151
            P  +L+  N M KE G   T++TY S+++ L   G+ E  EE+L +M +N G       
Sbjct: 19  DPMKALEMFNSMRKEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDMRQNVGNHMLEGV 78

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           Y    K Y  +     A+ ++ +M     C P + SYN ++ + +     D   +++  +
Sbjct: 79  YVGAMKNYGRKGKVQEAVNVFERMDFYD-CEPTVFSYNAIMSILVDSGYFDQAHKVYMRM 137

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           +  G+ PD+ S+T+ +   C   +   A +    M  +G     V + T+  G  + +
Sbjct: 138 RDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEEN 195


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 136/270 (50%), Gaps = 11/270 (4%)

Query: 17  MAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIE 76
           +  +F  +MI  G+ P+V TYNV+++ +C+   L           N+ ++F +MR  G+ 
Sbjct: 213 LVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLE----------NSRRLFVQMREMGLS 262

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           PDV +++ ++  Y +    +      N MK+ G  P + TY+ ++ C C   ++  A E 
Sbjct: 263 PDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEY 322

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
             EM  NG+ P+  TY+     +       GA+KL   M+  GL +PN  +Y  LI    
Sbjct: 323 FSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGL-LPNEFTYTSLIDANC 381

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
               +    ++ ND+  +G+  ++ +YT L+ GLC+  +  EA + F  M++ G+ P + 
Sbjct: 382 KAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQ 441

Query: 257 TFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            +  L  G I+++ +    ++ K++ E +I
Sbjct: 442 VYTALVHGYIKAERMEDAMKILKQMTECNI 471



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 138/290 (47%), Gaps = 15/290 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G+ K+  ++       EM + G  P+++TYN L+N  C         +FEK  R
Sbjct: 268 YNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYC---------KFEKMPR 318

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A + F EM+  G++P+V ++S ++  + +    Q ++  L  M+  G+ P   TY+S++
Sbjct: 319 -AFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLI 377

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + +A +LL +M++ GV  +  TY               A +++R M +DG+ 
Sbjct: 378 DANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGIS 437

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN   Y  L+  ++   RM+   +I   +    + PDL  Y  +I G C ++K +E   
Sbjct: 438 -PNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKL 496

Query: 242 YFVEMIEKGLLPQKVTFETL----YRGLIQSDMLRTWRRLKKKLDEESIT 287
              EM  +G+    V   T+    ++    SD L  ++ ++    E +I 
Sbjct: 497 ILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIV 546



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 138/287 (48%), Gaps = 11/287 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI   CK   +  A + L +M++ GV+ N+VTY  LL+G+C+   +           
Sbjct: 373 YTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMI---------- 422

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+VF  M   GI P+   ++ ++H Y +A + + ++  L  M E  I P +  Y S++
Sbjct: 423 EAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSII 482

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              CS  ++E+ + +L EM   G+  +          Y     ++ A+  +++M++ G+ 
Sbjct: 483 WGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGV- 541

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              + +Y +LI        +++  + +  +   GL P++  YT LI GLC     + A +
Sbjct: 542 EATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKK 601

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
            F EM  +G+ P    F  L  G ++   L+    L  ++ E +I F
Sbjct: 602 LFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEF 648



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 141/311 (45%), Gaps = 46/311 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI  +CK  ++  A  +  EM   G++PNVVTY+ L++  C+          E  ++
Sbjct: 303 YNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCK----------EGMMQ 352

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+  +MR  G+ P+  +++ ++    +A     +   LN M + G+   + TY++++
Sbjct: 353 GAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALL 412

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+ +AEE+   M+++G+ P+ + Y      Y   +    AMK+ +QM E  + 
Sbjct: 413 DGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNI- 471

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD---------------------- 219
            P++  Y  +I    +  +++  + I  ++K  G+  +                      
Sbjct: 472 KPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALN 531

Query: 220 -------------LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
                        + +Y +LI GLCE    + A  YF  M+  GL P    + +L  GL 
Sbjct: 532 FFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLC 591

Query: 267 QSDMLRTWRRL 277
            ++ + + ++L
Sbjct: 592 XNNCIESAKKL 602



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 127/263 (48%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I   CK   ++ + R   +M E G+ P+VVTYN L++G  +  SL           
Sbjct: 233 YNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLE---------- 282

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F+EM+  G  PD+ +++ +++ Y +  +   + +  + MK  G+ P V TYS+++
Sbjct: 283 EVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLI 342

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G ++ A +LL +M R G+ P+  TY           +   A KL   M + G+ 
Sbjct: 343 DAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVK 402

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N+ +Y  L+       RM    E++  +   G+ P+   YT L+HG  + ++ ++A +
Sbjct: 403 L-NIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMK 461

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
              +M E  + P  + + ++  G
Sbjct: 462 ILKQMTECNIKPDLILYGSIIWG 484



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 2/223 (0%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +  A + F  MR     P   S + +LH  S++   QL     N M   GI P+V TY+ 
Sbjct: 176 LEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNV 235

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC  G +E++  L  +M   G+ P   TYN     Y           L+ +MK+ G
Sbjct: 236 MIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVG 295

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            CVP++ +YN LI  +    +M    E ++++K +GL P++ +Y+ LI   C++   + A
Sbjct: 296 -CVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGA 354

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQS-DMLRTWRRLKKKL 281
            +   +M   GLLP + T+ +L     ++ ++   W+ L   L
Sbjct: 355 IKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDML 397



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 140/293 (47%), Gaps = 11/293 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+L++G+ K  R++ A + L +M E  ++P+++ Y  ++ G C +  L  ++      
Sbjct: 442 VYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKL----- 496

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                + +EM+ RGI  +    + ++  Y +A +   +L+    M++ G+  T+ TY  +
Sbjct: 497 -----ILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVL 551

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G +E A +    M+  G+ P+   Y               A KL+ +M+  G+
Sbjct: 552 IDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGM 611

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ ++  LI   +    +     + + +    +  DL  YT L+ G  +  +  +A 
Sbjct: 612 -TPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQAR 670

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQ 293
           ++F EMIEKG+LP++V    L R   +   L     LK +++  + +F  + Q
Sbjct: 671 KFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMAYSFEFDAQ 723



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 106/224 (47%), Gaps = 19/224 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G C+   +++A  +   M+  G++PNV  Y  L++G+C              I 
Sbjct: 548 YCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCX----------NNCIE 597

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A+K+FDEM+ RG+ PD+T+F+ ++    +    Q +L  ++ M E  I   +  Y+S+V
Sbjct: 598 SAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLV 657

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
                CG +  A +   EM+  G+ P      C  +EY  R   + A++L  +M+     
Sbjct: 658 SGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMAYS 717

Query: 178 ---DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218
              D     N    N+ +  ++ L + D+  ++ N    S +GP
Sbjct: 718 FEFDAQLAYNEQGVNLTLHAYLYL-KFDIQHQL-NRFGTSTMGP 759


>gi|356540343|ref|XP_003538649.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 543

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 139/281 (49%), Gaps = 11/281 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L++GWC+  + D A + + +M E G EP+V +Y   +   C           E+  R
Sbjct: 266 FNVLMHGWCRARKFDNARKAMEDMKELGFEPDVFSYTSFIEAYCH----------ERDFR 315

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             ++V +EMR  G  P+  +++ V+    +A Q   +L+    MK  G       YS ++
Sbjct: 316 KVDQVLEEMRENGCPPNAVTYTTVMLHLGKAGQLSKALEVYEKMKCDGCVADTPVYSCMI 375

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR++DA ++  +M + GV     TYN              A++L ++M EDG C
Sbjct: 376 FILGKAGRLKDACDVFEDMPKQGVVRDVVTYNTMISTACAHSREETALRLLKEM-EDGSC 434

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y+ L+ M     RM +++ + + +  + + PDL +Y++L++ LC+  K  +A  
Sbjct: 435 KPNVGTYHPLLKMCCKKKRMKVLKFLLDHMFKNDISPDLATYSLLVNALCKTGKVADAYS 494

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           +  EM+ KG  P+  T + L   L    ML    R+++ +D
Sbjct: 495 FLEEMVLKGFTPKPSTLKGLAGELESLSMLEEKERVEEWMD 535



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 14/238 (5%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP-DVTSFS 83
           M + GV  +    NVL++ + +  S          + +A KV   +  +G+ P    SF+
Sbjct: 220 MDKFGVNKDTAALNVLIDALVKGDS----------VEHAHKVV--LEFKGLIPLSSHSFN 267

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
           +++H + RA +   +   +  MKE G  P V +Y+S ++  C        +++L EM  N
Sbjct: 268 VLMHGWCRARKFDNARKAMEDMKELGFEPDVFSYTSFIEAYCHERDFRKVDQVLEEMREN 327

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G  P+A TY             + A+++Y +MK DG CV +   Y+ +I +     R+  
Sbjct: 328 GCPPNAVTYTTVMLHLGKAGQLSKALEVYEKMKCDG-CVADTPVYSCMIFILGKAGRLKD 386

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
             +++ D+   G+  D+ +Y  +I   C   + + A +   EM +    P   T+  L
Sbjct: 387 ACDVFEDMPKQGVVRDVVTYNTMISTACAHSREETALRLLKEMEDGSCKPNVGTYHPL 444



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 10/151 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+ +I+   K  R+  A     +M ++GV  +VVTYN +++  C  +      R E  +
Sbjct: 370 VYSCMIFILGKAGRLKDACDVFEDMPKQGVVRDVVTYNTMISTACAHS------REETAL 423

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R    +  EM     +P+V ++  +L +  +  + ++    L+ M +  I P +ATYS +
Sbjct: 424 R----LLKEMEDGSCKPNVGTYHPLLKMCCKKKRMKVLKFLLDHMFKNDISPDLATYSLL 479

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
           V  LC  G++ DA   L EMV  G  P   T
Sbjct: 480 VNALCKTGKVADAYSFLEEMVLKGFTPKPST 510



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 2/159 (1%)

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
           T+ T + V++ L    + EDA E    M + GV       N              A K+ 
Sbjct: 193 TLETMAKVIRRLAKARKHEDAIEAFRRMDKFGVNKDTAALNVLIDALVKGDSVEHAHKVV 252

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
            + K  GL   + HS+N+L+  +    + D  R+   D+K  G  PD+ SYT  I   C 
Sbjct: 253 LEFK--GLIPLSSHSFNVLMHGWCRARKFDNARKAMEDMKELGFEPDVFSYTSFIEAYCH 310

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           ++ +++  Q   EM E G  P  VT+ T+   L ++  L
Sbjct: 311 ERDFRKVDQVLEEMRENGCPPNAVTYTTVMLHLGKAGQL 349


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 144/279 (51%), Gaps = 17/279 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G CK   +D A+    +MI+RGV+P+  TYN L++G         + ++++ + 
Sbjct: 199 YTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYL------STGKWKEVV- 251

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVY---SRAHQPQLSLDKLNFMKEKGICPTVATYS 118
              ++ +EM   G+EPD  +++++L       R  + +L  D    M  KGI P VA Y+
Sbjct: 252 ---QMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDS---MFRKGIKPDVAIYA 305

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++    + G + +    L  MV NGV P+   +N  F  Y  +     AM ++ +M++ 
Sbjct: 306 ILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQ 365

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           GL  P++ S+  LI     L R+D     +N +   G+ P++  ++ L++GLC   KW++
Sbjct: 366 GLS-PDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEK 424

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A + F E++++G+    V F TL   L     +   +RL
Sbjct: 425 AEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRL 463



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 136/292 (46%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  L+   CK  R   A  F   M  +G++P+V  Y +LL+G   + +L     F     
Sbjct: 269 YALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMV 328

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +  I  A  +F++MR +G+ PDV SF  ++    +  +  
Sbjct: 329 GNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVD 388

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++ + N M  +G+ P +  +SS+V  LC+ G+ E AEEL  E++  G+C  A  +N   
Sbjct: 389 DAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLM 448

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      A +L   M   G+  PN+ SYN L+       R+D   ++ + +  +GL
Sbjct: 449 CNLCNEGRVMEAQRLIDLMIRVGV-RPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGL 507

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            P+  +YT+L+ G C+ ++  +A   F EM+ KG+ P   T+ T+  GL Q+
Sbjct: 508 KPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQT 559



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 136/304 (44%), Gaps = 17/304 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L+   C   R+  A+R +  MI  GV PNV++YN L+ G C              I 
Sbjct: 444 FNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHC----------LTGRID 493

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ D M   G++P+  +++I+L  Y +A +   +      M  KG+ P VATY++++
Sbjct: 494 EAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTIL 553

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR  +A EL   M+ +       TYN            + A K++R++      
Sbjct: 554 HGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKD-- 611

Query: 182 VPNMHS--YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            P + S  +NI+IG  +   R +   +++  +   GL PD+ +Y ++   L E+    E 
Sbjct: 612 -PQLDSVTFNIMIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEF 670

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLI-QSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
              F  M + G  P       L R L+ + D+ R    L  KLDE++ +  +   +    
Sbjct: 671 DGLFSAMEKSGTAPNSHMLNALVRRLLHRGDISRAGVYL-YKLDEKNFSLEASTTSMLIS 729

Query: 299 PYRR 302
            Y R
Sbjct: 730 LYSR 733



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 137/294 (46%), Gaps = 15/294 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI  +C++ R++      G +++ G   NV+  + LL G+C       ++R ++   
Sbjct: 93  YSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLC------DAKRVDEA-- 144

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             + +   M   G  PDV +++ V++ + R  Q + + +    M ++GI P V TY++V+
Sbjct: 145 -TDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVI 203

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    ++ A+ +  +M+  GV P   TYNC    Y         +++  +M   GL 
Sbjct: 204 DGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGL- 262

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y +L+       R    R  ++ +   G+ PD+  Y +L+HG   K    E   
Sbjct: 263 EPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHS 322

Query: 242 YFVEMIEKGLLPQKVTFETLY-----RGLIQSDMLRTWRRLKKKLDEESITFGS 290
           +   M+  G+ P +  F  ++     + +I+  M    +  ++ L  + ++FG+
Sbjct: 323 FLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGA 376



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 12/236 (5%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG------ICPTVAT 116
           A K+FDE+        V +F+ +L V SRA     S   ++            + P   T
Sbjct: 33  ALKLFDELLHCARPASVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSSKVAPNACT 92

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMK-LYRQM 175
           YS ++ C C  GR+E      G +++ G   +    +   K     K  + A   L  +M
Sbjct: 93  YSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILLLRM 152

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            E G C P++ +YN +I  F    +++    ++ ++   G+ P++ +YT +I GLC+ Q 
Sbjct: 153 SEFG-CPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQV 211

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSE 291
              A   F +MI++G+ P   T+  L  G + +     W+ + + L+E S T G E
Sbjct: 212 VDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTG---KWKEVVQMLEEMS-THGLE 263


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 140/292 (47%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI- 60
           YT LI   C  + +  A + L EM  RG +P+VVTYNVL+NG+C+   L  + +F  ++ 
Sbjct: 19  YTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMP 78

Query: 61  ------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                    +AEK+  EM  +G  P V +F+I+++   R     
Sbjct: 79  SYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLG 138

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++D L  M   G  P   +Y+ ++   C   +++ A + L  MV  G  P   TYN   
Sbjct: 139 RAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTML 198

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A++L  Q+   G C P + +YN +I     + + D   E+ ++++G GL
Sbjct: 199 TALCKDGKVDAAVELLNQLSSKG-CSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGL 257

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            PD+ +Y+ LI GL  + K +EA ++F ++   G+ P   T+ ++  GL ++
Sbjct: 258 KPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKA 309



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 138/277 (49%), Gaps = 11/277 (3%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++   C   R   AE+ L EM+ +G  P+VVT+N+L+N +CR+  L            A 
Sbjct: 92  ILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLG----------RAI 141

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            + ++M   G  P+  S++ +LH + +  +   ++  L  M  +G  P + TY++++  L
Sbjct: 142 DILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTAL 201

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G+++ A ELL ++   G  P   TYN            + A++L  +M+  GL  P+
Sbjct: 202 CKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGL-KPD 260

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y+ LI       +++   + ++DV+G G+ P+  +Y  ++ GLC+ Q+   A  +  
Sbjct: 261 VITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLA 320

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            MI KG  P +V++  L  G+    + +    L  +L
Sbjct: 321 YMISKGCKPTEVSYTILIEGIANEGLAKEALELLNEL 357



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 13/245 (5%)

Query: 22  LGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81
           L   +E+   P+V+TY +L+   C           E  +  A K+ DEM  RG +PDV +
Sbjct: 4   LDRQLEKECYPDVITYTILIEATCA----------ESGVGQAMKLLDEMGSRGCKPDVVT 53

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           ++++++   +  +   ++  LN M   G  P V T++ +++ +CS GR  DAE+LL EMV
Sbjct: 54  YNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMV 113

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANG-AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
           R G  PS  T+N     +  RK   G A+ +  +M   G C PN  SYN L+  F    +
Sbjct: 114 RKGCSPSVVTFNILIN-FLCRKGLLGRAIDILEKMPTHG-CTPNSLSYNPLLHGFCKEKK 171

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           MD   +    +   G  PD+ +Y  ++  LC+  K   A +   ++  KG  P  +T+ T
Sbjct: 172 MDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNT 231

Query: 261 LYRGL 265
           +  GL
Sbjct: 232 VIDGL 236



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 1/220 (0%)

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           +V D    +   PDV +++I++           ++  L+ M  +G  P V TY+ +V  +
Sbjct: 2   EVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGM 61

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  GR+++A + L  M   G  P+  T+N   +          A KL  +M   G C P+
Sbjct: 62  CKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKG-CSPS 120

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + ++NILI        +    +I   +   G  P+  SY  L+HG C+++K   A QY  
Sbjct: 121 VVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLE 180

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            M+ +G  P  VT+ T+   L +   +     L  +L  +
Sbjct: 181 IMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSK 220


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 145/293 (49%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+ K   +D A     EM++RG+ PNVVTYN ++  +C+           + + 
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCK----------AQAMD 251

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V   M   G+ P+  +++ ++H Y  + QP+ ++  L  M   G+ P V TY+S++
Sbjct: 252 KAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLM 311

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A ++   M + G+ P   TY    + Y  +        L   M  +G+ 
Sbjct: 312 DYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI- 370

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN + ++ILI  +    ++D    +++ ++  GL PD  +Y  +I  LC+  + ++A +
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           YF +MI++ L P  + + +L   L   D     + L  ++ +  I   + F N
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFN 483



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 138/297 (46%), Gaps = 19/297 (6%)

Query: 2   YTSLIYGWCKINRI-DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +T L+ G C   R  D  +  L  M + G  PNV +YN+LL G+C           E   
Sbjct: 129 FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCD----------ENRS 178

Query: 61  RNAEKVFDEMRVRGIE--PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           + A ++   M   G +  PDV S++ V++ + +      +    + M ++GI P V TY+
Sbjct: 179 QEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYN 238

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           S++  LC    ++ A E+L  MV+NGV P+  TYN     Y        A+   ++M  D
Sbjct: 239 SIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSD 298

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P++ +YN L+       R    R++++ +   GL P++ +Y  L+ G   K    E
Sbjct: 299 GV-EPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357

Query: 239 ACQYFVEMIEKGLLPQKVTFETLY-----RGLIQSDMLRTWRRLKKKLDEESITFGS 290
                  M+  G+ P    F  L      +G +   ML   +  ++ L+ +++T+G+
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGT 414



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 145/342 (42%), Gaps = 91/342 (26%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+++G+C   +   A  FL +M   GVEP+VVTYN L++ +C+               
Sbjct: 272 YNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGR----------CT 321

Query: 62  NAEKVFDEMRVRGIEPDVTS-----------------------------------FSIVL 86
            A K+FD M  RG++P++T+                                   FSI++
Sbjct: 322 EARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI 381

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
             Y++  +   ++   + M+++G+ P   TY +V+  LC  GR+EDA     +M+   + 
Sbjct: 382 CAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLS 441

Query: 147 PSAETYN------CFFKEYRGRKDANGAMKLYRQMKEDGLCV------------------ 182
           P    YN      C F ++      + A +L  +M + G+C+                  
Sbjct: 442 PGNIVYNSLIHSLCIFDKW------DKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 183 ----------------PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
                           PN+ +Y+ LI  +    +MD   ++   +   G+ PD  +Y  L
Sbjct: 496 IESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           I+G C+  + ++A   F EM   G+ P  +T+  + +GL Q+
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 154/347 (44%), Gaps = 58/347 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SLI+  C  ++ D A+  + EM++RG+  + + +N +++  C+          E  +
Sbjct: 446 VYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCK----------EGRV 495

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             +EK+FD M   G++P++ ++S ++  Y  A +   +   L  M   G+ P   TY+++
Sbjct: 496 IESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG- 179
           +   C   R+EDA  L  EM  +GV P   TYN   +     +    A +LY  + E G 
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT 615

Query: 180 -----------------------------LCVPNMH----SYNILIGMFMALNRMDMVRE 206
                                        LC+ ++     ++NI+IG  + + R D  ++
Sbjct: 616 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKD 675

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++  +  +GL PD+ +Y+++   L E+   +E    F+ M E G         ++ R L+
Sbjct: 676 LFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLL 735

Query: 267 Q-SDMLRTWRRL----KKKLDEESITF--------GSEFQNYH-FKP 299
           Q  D+ R    L    +K    E+ T         G ++Q YH F P
Sbjct: 736 QRGDITRAGTYLFMIDEKHFSLEASTASLFLDLLSGGKYQEYHRFLP 782



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 135/292 (46%), Gaps = 26/292 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKT 59
           +++ LI  + K  ++D A     +M ++G+ P+ VTY  ++  +C+   +  + R FE+ 
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 60  I------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           I                          A+++  EM  RGI  D   F+ ++  + +  + 
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             S    + M   G+ P + TYS+++   C  G++++A +LL  MV  G+ P   TYN  
Sbjct: 496 IESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y        A+ L+R+M+  G+  P++ +YNI++       R    +E++  +  SG
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVS-PDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +L +Y +++HGLC+     EA + F  +    L  +  TF  +   L++
Sbjct: 615 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 666



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 125/281 (44%), Gaps = 27/281 (9%)

Query: 30  VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89
           V PN+ TY +L+   C    L   +     + N  K       +G   D  +F+ +L   
Sbjct: 87  VTPNLCTYGILIGSCCCAGRL---DLGFAALGNVIK-------KGFRVDAIAFTPLLKGL 136

Query: 90  SRAHQPQLSLD-KLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV-CP 147
               +   ++D  L  M + G  P V +Y+ ++K LC   R ++A ELL  M  +G  CP
Sbjct: 137 CADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCP 196

Query: 148 S-----AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202
                     N FFKE     D + A   Y +M + G+ +PN+ +YN +I        MD
Sbjct: 197 PDVVSYTTVINGFFKE----GDLDKAYGTYHEMLDRGI-LPNVVTYNSIIAALCKAQAMD 251

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
              E+   +  +G+ P+  +Y  ++HG C   + KEA  +  +M   G+ P  VT+ +L 
Sbjct: 252 KAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLM 311

Query: 263 RGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNYHFK 298
             L ++      R++     K+ L  E  T+G+  Q Y  K
Sbjct: 312 DYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 108/218 (49%), Gaps = 12/218 (5%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG---ICPTVATYS 118
           +A  VFDE+  RG    +   +  L   +R H P  ++ + N M   G   + P + TY 
Sbjct: 37  DARHVFDELLRRGRGASIYGLNCALADVAR-HSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL-YRQMKE 177
            ++   C  GR++     LG +++ G    A  +    K     K  + AM +  R+M +
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 178 DGLCVPNMHSYNILIGMFMALNR----MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
            G C+PN+ SYNIL+      NR    +++++ + +D  G    PD+ SYT +I+G  ++
Sbjct: 156 LG-CIPNVFSYNILLKGLCDENRSQEALELLQMMPDD--GGDCPPDVVSYTTVINGFFKE 212

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
               +A   + EM+++G+LP  VT+ ++   L ++  +
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAM 250


>gi|255579531|ref|XP_002530608.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529856|gb|EEF31788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 596

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 150/308 (48%), Gaps = 22/308 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSL+YGWC+  ++  A+  L +M E G EP++V +N LL+       +           
Sbjct: 248 FTSLLYGWCREGKLIEAKHVLVQMREAGFEPDIVVFNNLLSAYSMAGKM----------T 297

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  EM  +G EP+  S++I++  +    +   ++     M+  G    V TY++++
Sbjct: 298 DAFDLLKEMVRKGCEPNANSYTIMIQAFCSQEKMDEAMRVFVEMERTGCEADVVTYTALI 357

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+I    ++L  M + G  P+  TY      +  +++    ++L   M+  G C
Sbjct: 358 SGFCKWGKINRGYQILDAMKQKGHMPNQLTYLRILLAHEKKEELEECLELIESMRMVG-C 416

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++  YN++I +   L  +    +IWN+++ S   P+LD++ ++IHG   +    EAC+
Sbjct: 417 VPDLSIYNVVIRLACKLGEVKQGVQIWNEMEASDFSPELDTFVIMIHGFLGQGCLVEACE 476

Query: 242 YFVEMIEKGLL--PQKVTFETLYRGLIQSDML----RTWRRLKKK-----LDEESITFGS 290
           YF EMI +GLL  PQ    + L   L++ + L      W  +  K      D  +I   S
Sbjct: 477 YFKEMIGRGLLTTPQYGILKELLNALLRGEKLGMAKDVWSCIVTKGCELNADAWTIWIHS 536

Query: 291 EFQNYHFK 298
            F N H K
Sbjct: 537 LFSNGHVK 544



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 127/267 (47%), Gaps = 15/267 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I  +C   ++D A R   EM   G E +VVTY  L++G C+             I 
Sbjct: 318 YTIMIQAFCSQEKMDEAMRVFVEMERTGCEADVVTYTALISGFCKWGK----------IN 367

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++ D M+ +G  P+  ++  +L  + +  + +  L+ +  M+  G  P ++ Y+ V+
Sbjct: 368 RGYQILDAMKQKGHMPNQLTYLRILLAHEKKEELEECLELIESMRMVGCVPDLSIYNVVI 427

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G ++   ++  EM  +   P  +T+      + G+     A + +++M   GL 
Sbjct: 428 RLACKLGEVKQGVQIWNEMEASDFSPELDTFVIMIHGFLGQGCLVEACEYFKEMIGRGLL 487

Query: 182 VPNMHSYNILIGMFMALNR---MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
                 Y IL  +  AL R   + M +++W+ +   G   + D++T+ IH L      KE
Sbjct: 488 TT--PQYGILKELLNALLRGEKLGMAKDVWSCIVTKGCELNADAWTIWIHSLFSNGHVKE 545

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGL 265
           AC Y ++M+E  ++P+  TF  L RGL
Sbjct: 546 ACSYCLDMMEADIMPKPETFAKLMRGL 572



 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 3/157 (1%)

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR-NGVCPSAETYNCFFKEYRGRKD 164
           K+ G   +   Y ++VK      +      LL EM + N V  ++E +    + +   + 
Sbjct: 132 KQPGYRHSYENYKAMVKIFSKMRQFGAVWALLEEMRKDNSVLITSELFIVLIRRFASARL 191

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
              A+++  +M + G C P+ + +  L+        +     ++ D++     P L  +T
Sbjct: 192 VEKAIEVLDEMPKYG-CEPDEYVFGCLLDALCKNGSVKQAASLFEDMRVR-FSPSLRHFT 249

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            L++G C + K  EA    V+M E G  P  V F  L
Sbjct: 250 SLLYGWCREGKLIEAKHVLVQMREAGFEPDIVVFNNL 286



 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 28/160 (17%), Positives = 61/160 (38%), Gaps = 2/160 (1%)

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
           K+  +  T   +  +++   S   +E A E+L EM + G  P    + C           
Sbjct: 168 KDNSVLITSELFIVLIRRFASARLVEKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSV 227

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
             A  L+  M+      P++  +  L+  +    ++   + +   ++ +G  PD+  +  
Sbjct: 228 KQAASLFEDMRVR--FSPSLRHFTSLLYGWCREGKLIEAKHVLVQMREAGFEPDIVVFNN 285

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           L+       K  +A     EM+ KG  P   ++  + +  
Sbjct: 286 LLSAYSMAGKMTDAFDLLKEMVRKGCEPNANSYTIMIQAF 325


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 138/270 (51%), Gaps = 7/270 (2%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-----F 56
           Y  +I G  K   +D A     EM+ +G  PN+VTYN +++G+C+  ++  +E      F
Sbjct: 142 YNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMF 201

Query: 57  EK-TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA 115
           +K  +  A ++  +M   G++PDV ++S+++  Y +  +   + +  + M  +G  P   
Sbjct: 202 DKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAY 261

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           TY +++    + G + D  +LL  M+++G+      +N   + Y   +  + AM  + +M
Sbjct: 262 TYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEM 321

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           ++ G   PN+ +Y  +I +     R++     ++ +   GL PD+ ++T LIHGLC   +
Sbjct: 322 RQKGFS-PNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGE 380

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           WK+  +   EMI +G+ P  +   T+   L
Sbjct: 381 WKKVEKLSFEMINRGIHPNAIFLNTIMDSL 410



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 140/313 (44%), Gaps = 26/313 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL---H------- 51
           Y+ LI  +CKI R   A      M+ RG  P+  TY  LL+G   + +L   H       
Sbjct: 228 YSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMI 287

Query: 52  ----PSERF-----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
               P E              +T+  A   F EMR +G  P+V +++ V+ +  +A + +
Sbjct: 288 QDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVE 347

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++   + M  +G+ P + T++S++  LC+ G  +  E+L  EM+  G+ P+A   N   
Sbjct: 348 DAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIM 407

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      A   + Q+   G+  P++ SY ILI  +    +MD   ++   +   GL
Sbjct: 408 DSLCKEGRVLEAHDFFDQIIHVGV-KPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGL 466

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD  +Y+ L++G C+  +  +A   + EM  K + P  +T+  +  GL  +  +   R 
Sbjct: 467 RPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAARE 526

Query: 277 LKKKLDEESITFG 289
              K+ +  I  G
Sbjct: 527 FYMKIVDSGIQLG 539



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 139/318 (43%), Gaps = 46/318 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSLI+G C I      E+   EMI RG+ PN +  N +++ +C+          E  + 
Sbjct: 368 FTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCK----------EGRVL 417

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A   FD++   G++PDV S++I++  Y    +   S+  L  M   G+ P   TYS+++
Sbjct: 418 EAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALL 477

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR++DA  L  EM    V P+A TYN              A + Y ++ + G+ 
Sbjct: 478 NGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQ 537

Query: 182 VPNMHSYNILIG-------------MFMAL----------------------NRMDMVRE 206
           +  +++YNI++G             MF  L                       R+   + 
Sbjct: 538 L-GINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKS 596

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +++ +  SGL PD   Y ++I    E+   +E+ + F+ M + G      T   + R L+
Sbjct: 597 LFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTANSRTLNAIVRKLL 656

Query: 267 QSDMLRTWRRLKKKLDEE 284
           +   +R       K+DE+
Sbjct: 657 EKGDVRRAGTYLTKIDEK 674



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 18/300 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I   CK  R++ A     +M+  G+ P+++T+  L++G+C               +
Sbjct: 333 YTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEW----------K 382

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             EK+  EM  RGI P+    + ++    +  +   + D  + +   G+ P V +Y+ ++
Sbjct: 383 KVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILI 442

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+++++ +LLG MV  G+ P   TY+     Y      + A+ LYR+M    + 
Sbjct: 443 DGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDV- 501

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            PN  +YNI++ G+F A  R+   RE +  +  SG+   +++Y +++ GLCE     EA 
Sbjct: 502 KPNAITYNIILHGLFHA-GRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEAL 560

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGSEFQNY 295
           + F  +  K    +  TF  +  GL++   +   +      L   L  ++I +G   Q++
Sbjct: 561 RMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSH 620



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 124/264 (46%), Gaps = 30/264 (11%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
           PNV++YN+++NG+ +          E  +  A  +F EM  +G  P++ +++ V+    +
Sbjct: 137 PNVLSYNMVINGLFK----------EGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCK 186

Query: 92  AH----------------QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
           A                 Q + ++  L  M   G+ P V TYS ++   C  GR  +A  
Sbjct: 187 AQAMDKAEAVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARN 246

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           +   MVR G  P A TY      Y  +        L   M +DG+ + + H +NILI  +
Sbjct: 247 IFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLED-HVFNILIRAY 305

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
                +D     + +++  G  P++ +YT +I  LC+  + ++A  +F +M+ +GL P  
Sbjct: 306 AKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDI 365

Query: 256 VTFETLYRGLIQSDMLRTWRRLKK 279
           +TF +L  GL     +  W++++K
Sbjct: 366 ITFTSLIHGLCT---IGEWKKVEK 386



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 39/224 (17%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVY-------SRAHQPQLSLDKLNFMKEKGI-- 110
           + +A  +FDE+  R     V +F+ VL V        S+ H   L++   N M + G+  
Sbjct: 30  LEDALNLFDELLPRARSASVHAFNRVLTVVAHGDSSSSQRHGAALAVSLFNTMAQVGVNK 89

Query: 111 -CPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAM 169
                 T+  +++C C+ G ++ A E                     +E RG + A    
Sbjct: 90  LATDACTFGILIRCFCNVGLLDFALE---------------------EESRGSRAA---- 124

Query: 170 KLYRQMKEDGL-CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228
                M +DG  C PN+ SYN++I        +D    +++++ G G  P++ +Y  +I 
Sbjct: 125 --VHMMADDGYNCPPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVID 182

Query: 229 GLCEKQKWKEACQYFVEMIEKGLLPQKV-TFETLYRGLIQSDML 271
           GLC+ Q   +A     +M +KG L + V   + +  G +Q D++
Sbjct: 183 GLCKAQAMDKAEAVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVV 226


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 133/280 (47%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+    K  R D       +M+  G  PN  TY  LL  +C+      ++RFE+   
Sbjct: 20  YNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQ------AQRFEE--- 70

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  VF  M  +G  P+V S+SI++    R  +   + + LN M + G  P V TY S++
Sbjct: 71  -ARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLL 129

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++++A +L   MV  G  P    YN     +  + D   A +L+ +M E G C
Sbjct: 130 SGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKG-C 188

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P + +YN L+  F        V+ ++ D+   G  P++ ++  L+ G C+     EA +
Sbjct: 189 IPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHR 248

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            F+EM   G  P  V++ TL RG+         +RL +++
Sbjct: 249 LFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREM 288



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 135/295 (45%), Gaps = 26/295 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-------- 53
           Y+ LI G C+  ++D A   L EMI+ G +PNVVTY  LL+G+C+   L  +        
Sbjct: 90  YSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMV 149

Query: 54  ---------------ERFEK--TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                          + F K   +  A ++F+EM  +G  P V +++ +L  +SR  +  
Sbjct: 150 YRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFG 209

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
                   M  +G  P + T+++++   C  G + +A  L  EM   G  P   +YN   
Sbjct: 210 RVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLM 269

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           +    +   + A +L R+M   G+  P++ SYNILI  +     +D   +++ ++  SGL
Sbjct: 270 RGMCSKGKPHEAQRLLREMIRSGV-GPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGL 328

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
            PD  SY+ +I  LC   K   A   F +MI  G  P       L  GL + + L
Sbjct: 329 EPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERL 383



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 127/259 (49%), Gaps = 23/259 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI G+ K   +  A R   EM+E+G  P V TYN LL+G  R+             
Sbjct: 159 VYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFG--------- 209

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR------AHQPQLSLDKLNFMKEKGICPTV 114
              + +F +M  +G  P++ +F+ +L  + +      AH+  L       M+  G  P V
Sbjct: 210 -RVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLE------MRSLGCPPDV 262

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            +Y+++++ +CS G+  +A+ LL EM+R+GV P   +YN     Y      + A+KL+ +
Sbjct: 263 VSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYE 322

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           + + GL  P+  SY+ +I       ++     ++ D+  +G  PD      L+ GLC  +
Sbjct: 323 IPKSGL-EPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGE 381

Query: 235 KWKEACQYFVEMIEKGLLP 253
           +  E+C+ F  M++   +P
Sbjct: 382 RLTESCELFQAMVKFECVP 400



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 14/241 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L+ G+CK+  +  A R   EM   G  P+VV+YN L+ G+C +   H          
Sbjct: 230 FNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPH---------- 279

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++  EM   G+ PD+ S++I++  YS++     ++     + + G+ P   +YS+++
Sbjct: 280 EAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTII 339

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETY-NCFFKEYRGRKDANGAMKLYRQMKEDGL 180
            CLC  G++  A  +  +M+ NG  P A           RG +           +K +  
Sbjct: 340 DCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFE-- 397

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           CVP +  YN+L+       R D V EI++++   G  PD++   +++  L  +   KEA 
Sbjct: 398 CVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETL-RRSDDKEAA 456

Query: 241 Q 241
           +
Sbjct: 457 E 457



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 14/204 (6%)

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           S++ +L V +++ +        N M   G  P   TY  +++ LC   R E+A  +   M
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 141 VRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
              G  P+  +Y+       RG+K  + A +L  +M  DG   PN+ +Y  L+     + 
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQK-VDEAAELLNEMI-DGGHQPNVVTYGSLLSGLCKMG 136

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           ++    ++++ +   G  PD   Y +LI G  +K    EA + F EM+EKG +P   T+ 
Sbjct: 137 KLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYN 196

Query: 260 TLYRGL--------IQS---DMLR 272
           +L  G         +QS   DMLR
Sbjct: 197 SLLSGFSRKGEFGRVQSLFKDMLR 220


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 132/265 (49%), Gaps = 11/265 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +I G C++  +D     LG+M E G+ PNVV Y  L++G C+             I   +
Sbjct: 170 MIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGD----------IERGK 219

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           ++F +M    +  +  +++++++ + +    +  ++    MK  GI P V TY+S++   
Sbjct: 220 QLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRC 279

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C+ G++ +A EL  EM   GV  +  TYN         +    A +L  +MK DGL  PN
Sbjct: 280 CNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLS-PN 338

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + SYN LI  + ++  +D    ++N +K SG  P L +Y +LI G  E +          
Sbjct: 339 LISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVR 398

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSD 269
           EM  +GL P KVT+  L   L++SD
Sbjct: 399 EMEARGLSPSKVTYTILMDALVRSD 423



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 148/312 (47%), Gaps = 26/312 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV----CRRASLHPSERF 56
           +YT+LI G CK   I+  ++   +M E  V  N  TY VL+NG      ++  +   E+ 
Sbjct: 201 VYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKM 260

Query: 57  EKT---------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           + T                     + NA ++FDEMR RG+  +V +++ ++    +  + 
Sbjct: 261 KLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRV 320

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +   +  MK  G+ P + +Y++++   CS G ++ A  L  +M  +G  PS  TYN  
Sbjct: 321 LEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNIL 380

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +   K++ G   + R+M+  GL  P+  +Y IL+   +  + ++   +I++ ++ +G
Sbjct: 381 IAGFSEAKNSAGVTDMVREMEARGLS-PSKVTYTILMDALVRSDNIEKAFQIYSSMEKAG 439

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           L  D+  Y +LIHGLC     KEA + F  + E  L P  V + T+  G  +        
Sbjct: 440 LVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRAL 499

Query: 276 RLKKKLDEESIT 287
           RL K++ E  + 
Sbjct: 500 RLLKEMGENGMV 511



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 11/253 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G C+  R+  AER +  M   G+ PN+++YN L++G C   +L           
Sbjct: 307 YNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLD---------- 356

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F++M+  G  P + +++I++  +S A       D +  M+ +G+ P+  TY+ ++
Sbjct: 357 KASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILM 416

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L     IE A ++   M + G+      Y           D   A KL++ + E  L 
Sbjct: 417 DALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHL- 475

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN   YN +I  +           +  ++  +G+ P++ SY   I  LC+ +KW EA  
Sbjct: 476 KPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEV 535

Query: 242 YFVEMIEKGLLPQ 254
              +MIE GL P 
Sbjct: 536 LLKDMIELGLKPS 548



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 119/259 (45%), Gaps = 11/259 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I   C   +++ A     EM ERGV  NVVTYN L+ G+C+          E+ + 
Sbjct: 272 YNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQ----------ERRVL 321

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE++   M+  G+ P++ S++ ++  Y        +    N MK  G  P++ATY+ ++
Sbjct: 322 EAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILI 381

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                        +++ EM   G+ PS  TY           +   A ++Y  M++ GL 
Sbjct: 382 AGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGL- 440

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V +++ Y +LI     +  M    +++  +    L P+   Y  +I+G C++     A +
Sbjct: 441 VADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALR 500

Query: 242 YFVEMIEKGLLPQKVTFET 260
              EM E G++P   ++ +
Sbjct: 501 LLKEMGENGMVPNVASYNS 519



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 2/221 (0%)

Query: 67  FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS 126
           F++M  RG+ P   +F+ +L +  +++  + +    N  K   +   V ++  ++K  C 
Sbjct: 118 FNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETK-GNVKLDVYSFGIMIKGCCE 176

Query: 127 CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH 186
            G ++   E+LG+M   G+ P+   Y           D     +L+ +M E  + V N +
Sbjct: 177 VGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDV-VANQY 235

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
           +Y +LI  F  +       E++  +K +G+ P++ +Y  +I   C   K   A + F EM
Sbjct: 236 TYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEM 295

Query: 247 IEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            E+G+    VT+ TL  GL Q   +    RL  ++  + ++
Sbjct: 296 RERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLS 336



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 78/156 (50%), Gaps = 10/156 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+    + + I+ A +    M + G+  ++  Y VL++G+C    +  + +  K++ 
Sbjct: 412 YTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSL- 470

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 DEM ++   P+   ++ +++ Y +      +L  L  M E G+ P VA+Y+S +
Sbjct: 471 ------DEMHLK---PNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTI 521

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           + LC   +  +AE LL +M+  G+ PS   +N   K
Sbjct: 522 QILCKDEKWTEAEVLLKDMIELGLKPSISIWNMISK 557



 Score = 44.3 bits (103), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++IYG+CK      A R L EM E G+ PNV +YN  +  +C+          ++  
Sbjct: 481 IYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCK----------DEKW 530

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIV 85
             AE +  +M   G++P ++ ++++
Sbjct: 531 TEAEVLLKDMIELGLKPSISIWNMI 555


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 137/293 (46%), Gaps = 26/293 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           Y+ L+ G+C + +++ A   L EM+   + P++ TY +L++ +C+   +  +E       
Sbjct: 236 YSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMV 295

Query: 56  -------------------FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  + NA++VF  M   G+ PDV  +SI+++   +  +  
Sbjct: 296 KACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVD 355

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+    + +K + P   TY+S++ CLC  GRI    +L  EM+  G  P   TYN   
Sbjct: 356 EALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLI 415

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A+ L+ +MK+  +  PN++++ IL+     + R+    E + D+   G 
Sbjct: 416 DALCKNGHLDRAIALFNKMKDQAI-RPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGY 474

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
             ++ +YT++I+GLC++    EA      M + G +   VTFE + R     D
Sbjct: 475 CLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKD 527



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 141/285 (49%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G CKI     A R L  +    + PNVV Y+++++ +C+          +  + 
Sbjct: 166 YGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCK----------DTLVD 215

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++ EM  +GI PDV ++SI++  +    Q   ++D LN M  + I P + TY+ +V
Sbjct: 216 EAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILV 275

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++++AE +L  MV+  V      Y+     Y    + N A +++  M + G+ 
Sbjct: 276 DALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGV- 334

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++H Y+I+I     + R+D    ++ ++    + PD  +YT LI  LC+  +      
Sbjct: 335 TPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWD 394

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F EM+++G  P  +T+  L   L ++  L     L  K+ +++I
Sbjct: 395 LFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAI 439



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 128/272 (47%), Gaps = 11/272 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+ +I   CK   +D A     EM+ +G+ P+VVTY++L++G C    L+         
Sbjct: 200 IYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLN--------- 250

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + +EM +  I PD+ +++I++    +  + + + + L  M +  +   V  YS++
Sbjct: 251 -RAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTL 309

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C    + +A+ +   M + GV P    Y+         K  + A+ L+ ++ +  +
Sbjct: 310 MDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNM 369

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VP+  +Y  LI       R+  V ++++++   G  PD+ +Y  LI  LC+      A 
Sbjct: 370 -VPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAI 428

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
             F +M ++ + P   TF  L  GL +   L+
Sbjct: 429 ALFNKMKDQAIRPNVYTFTILLDGLCKVGRLK 460



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 140/314 (44%), Gaps = 47/314 (14%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +I  +C   ++ +A   + ++++ G +PN +T N L+ G+C           E  ++ A 
Sbjct: 99  IINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLC----------LEGKVKEAL 148

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           +  D++  +G      S+ I+++   +  + + ++  L  ++   I P V  YS ++  L
Sbjct: 149 RFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRL 208

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C    +++A +L  EMV  G+ P   TY+     +      N A+ L  +M  + +  P+
Sbjct: 209 CKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENIN-PD 267

Query: 185 MHSYNILIGM-----------------------------------FMALNRMDMVREIWN 209
           +++Y IL+                                     +  +N ++  + ++ 
Sbjct: 268 IYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFY 327

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            +   G+ PD+  Y+++I+GLC+ ++  EA   F E+ +K ++P  VT+ +L   L +S 
Sbjct: 328 TMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSG 387

Query: 270 MLR-TWRRLKKKLD 282
            +   W    + LD
Sbjct: 388 RISYVWDLFDEMLD 401



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 10/179 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI   CK  RI        EM++RG  P+V+TYN L++ +C+   L           
Sbjct: 376 YTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLD---------- 425

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F++M+ + I P+V +F+I+L    +  + + +L+    +  KG C  V TY+ ++
Sbjct: 426 RAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMI 485

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             LC  G +++A  L   M  NG    A T+    + +  + + + A KL R+M   GL
Sbjct: 486 NGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARGL 544


>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 456

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 145/296 (48%), Gaps = 16/296 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G CKI     A +FL  + +     NVV YN +++G+C+          +K + 
Sbjct: 160 YGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCK----------DKLVN 209

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A   + EM  RGI P+V +++ ++  +  A Q   +   LN M  K I P V TY+ ++
Sbjct: 210 EAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILI 269

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++++A+ LL EM   G      TY      +   ++ + A  L+ +MKE G+ 
Sbjct: 270 DALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGI- 328

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN ++Y  LI       R+   ++++ D+   G   D+ +Y ++I GLC++    EA  
Sbjct: 329 QPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALA 388

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG-SEFQNYH 296
              +M + G +P  VTFE + R L + D         +KL  E I  G   F+N+H
Sbjct: 389 IKSKMEDNGCIPNVVTFEIIIRSLFKKD----ENDKAEKLLHEMIAKGLLRFRNFH 440



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 128/277 (46%), Gaps = 11/277 (3%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C + ++  +   LG++++ G +PN +T   L+ G+C +  +  S  F        
Sbjct: 93  LINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFH------- 145

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
              D++  +G + +  S+  +L+   +  + + ++  L  +++      V  Y++++  L
Sbjct: 146 ---DKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGL 202

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C    + +A +   EM   G+ P+  TY      +       GA  L  +M    +  PN
Sbjct: 203 CKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNIN-PN 261

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           +++Y ILI       ++   + +  ++   G   D+ +YT L+ G C+ Q   +A   F+
Sbjct: 262 VYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFM 321

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +M E G+ P K T+  L  GL +   L+  ++L + L
Sbjct: 322 KMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDL 358



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 122/252 (48%), Gaps = 11/252 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++I G CK   ++ A  F  EM  RG+ PNV+TY  L+ G C    L          
Sbjct: 194 MYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQL---------- 243

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + +EM ++ I P+V +++I++    +  + + + + L  M  +G    V TY+S+
Sbjct: 244 TGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSL 303

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C    ++ A  L  +M   G+ P+  TY               A KL++ +   G 
Sbjct: 304 LDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGC 363

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C+ ++ +YN++IG       +D    I + ++ +G  P++ ++ ++I  L +K +  +A 
Sbjct: 364 CI-DVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSLFKKDENDKAE 422

Query: 241 QYFVEMIEKGLL 252
           +   EMI KGLL
Sbjct: 423 KLLHEMIAKGLL 434



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 92/209 (44%), Gaps = 1/209 (0%)

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           +  + +A   F+ M +    P +  F  +L   ++      ++     M+ KGI P + T
Sbjct: 30  DNVVDDAISQFNGMLLMHHTPPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVT 89

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
            + ++ C C  G++  +  +LG++++ G  P+  T     K    + +   ++  + ++ 
Sbjct: 90  LNILINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVV 149

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G  + N  SY  L+     +       +    ++ S  G ++  Y  +I GLC+ +  
Sbjct: 150 AQGFQM-NQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLV 208

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            EA  ++ EM  +G+ P  +T+ TL  G 
Sbjct: 209 NEAYDFYSEMNARGIFPNVITYTTLIGGF 237



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 1/123 (0%)

Query: 163 KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS 222
           K  + A+ L +QM+  G+  PN+ + NILI  F  L +M     +   +   G  P+  +
Sbjct: 66  KHYSTAISLSKQMEVKGI-EPNLVTLNILINCFCHLGQMSFSFSVLGKILKLGYQPNTIT 124

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
            T L+ GLC K + +++  +  +++ +G    +V++ TL  GL +    R   +  + ++
Sbjct: 125 LTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIE 184

Query: 283 EES 285
           + S
Sbjct: 185 DSS 187


>gi|259490098|ref|NP_001159276.1| uncharacterized protein LOC100304366 [Zea mays]
 gi|223943161|gb|ACN25664.1| unknown [Zea mays]
 gi|414590092|tpg|DAA40663.1| TPA: hypothetical protein ZEAMMB73_658820 [Zea mays]
 gi|414590093|tpg|DAA40664.1| TPA: hypothetical protein ZEAMMB73_658820 [Zea mays]
          Length = 535

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 130/258 (50%), Gaps = 14/258 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT++++ WC+  R+D AER   EM + G+ PNV TY  +++ + R             +
Sbjct: 242 LYTAVVHAWCRAGRLDEAERVFTEMQQSGIMPNVYTYTAVIDAMYRAGQ----------V 291

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++  +M   G  P+ T+F+ ++  + +A + +  L   N M++    P V TY+ +
Sbjct: 292 PRAQELLCQMIDSGCPPNTTTFNAIMRSHVKAGRSEQVLQVHNQMQQLRCEPDVITYNFL 351

Query: 121 VKCLCSCGR--IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           ++  C  G+  ++ A ++L +M      P   T+N  F+      +   A KLY +M+E 
Sbjct: 352 IETHCGKGQGNLDAALKVLDKMTAKKCVPDCHTFNPMFRLLLVLGNIGAAHKLYEKMREL 411

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
             C PN+ +YN L+ +F     MDMV  +  D+   G+ P++ +Y  LI   C +  WK 
Sbjct: 412 Q-CKPNVVTYNCLLRLFNKEKSMDMVLRMKKDMDAEGIEPNMHTYAALIEAFCGRGNWKR 470

Query: 239 ACQYFVEMI-EKGLLPQK 255
           A     EMI EK   P K
Sbjct: 471 AHTTLKEMIEEKSFKPSK 488



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 135/318 (42%), Gaps = 38/318 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--RASLHPSE---- 54
           +Y S+I    K     +A   L EM ER V    ++  ++L    R  RA + PSE    
Sbjct: 137 LYASMIVLLAKHRHFGLARHLLDEMRERAVP---ISRQLILALTRRYVRAEM-PSEAADL 192

Query: 55  --RFE----------------------KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
             R E                      +    A+ +FD  R     PDV  ++ V+H + 
Sbjct: 193 FRRMEEYGAGAPDPATLASLLAALSKKRLASEAQALFDSCRTV-FTPDVVLYTAVVHAWC 251

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
           RA +   +      M++ GI P V TY++V+  +   G++  A+ELL +M+ +G  P+  
Sbjct: 252 RAGRLDEAERVFTEMQQSGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTT 311

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR--MDMVREIW 208
           T+N   + +     +   ++++ QM++   C P++ +YN LI       +  +D   ++ 
Sbjct: 312 TFNAIMRSHVKAGRSEQVLQVHNQMQQ-LRCEPDVITYNFLIETHCGKGQGNLDAALKVL 370

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           + +      PD  ++  +   L        A + + +M E    P  VT+  L R   + 
Sbjct: 371 DKMTAKKCVPDCHTFNPMFRLLLVLGNIGAAHKLYEKMRELQCKPNVVTYNCLLRLFNKE 430

Query: 269 DMLRTWRRLKKKLDEESI 286
             +    R+KK +D E I
Sbjct: 431 KSMDMVLRMKKDMDAEGI 448



 Score = 40.8 bits (94), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 21/139 (15%)

Query: 12  INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMR 71
           +  I  A +   +M E   +PNVVTYN LL    +  S+    R +K          +M 
Sbjct: 395 LGNIGAAHKLYEKMRELQCKPNVVTYNCLLRLFNKEKSMDMVLRMKK----------DMD 444

Query: 72  VRGIEPDVTSFSIVLHVY------SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
             GIEP++ +++ ++  +       RAH    +L ++  ++EK   P+      V+  L 
Sbjct: 445 AEGIEPNMHTYAALIEAFCGRGNWKRAHT---TLKEM--IEEKSFKPSKQVRDMVLVLLR 499

Query: 126 SCGRIEDAEELLGEMVRNG 144
             G+++  EEL+  MV  G
Sbjct: 500 KAGQLKKHEELVELMVDRG 518


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 136/260 (52%), Gaps = 15/260 (5%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +LI+G C+ N +  A + L  M+  GVE + +TYN+++ G C+ + +            A
Sbjct: 462 ALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMD----------EA 511

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            ++ D+M  RG +PD+ +F+I LH Y    + +  L  L+ MK +G+ P + TY +++  
Sbjct: 512 IQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDG 571

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C    +  A E L E+++NG+ P+A  YN     Y    + + A+ +   MK +G+  P
Sbjct: 572 YCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGI-QP 630

Query: 184 NMHSYNILIGMFMALNRMDMVREIWND--VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              +YN L+        ++ V+ ++    VK   LG  +  YT++I G C+  K  EA  
Sbjct: 631 TPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELG--VIGYTIIIQGFCKIGKIDEAVM 688

Query: 242 YFVEMIEKGLLPQKVTFETL 261
           YF EM  +G+ P K+T+ TL
Sbjct: 689 YFKEMHSRGIPPNKMTYTTL 708



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 141/324 (43%), Gaps = 38/324 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           YT++I   C+   ID A   L E+   G++P VVTYNVL++ +C+   +  + R      
Sbjct: 214 YTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMV 273

Query: 57  EKTIRNA--------------------EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           E  +R +                      V  EM+  GI P+   ++ ++  + R     
Sbjct: 274 EGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCS 333

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   + M  KGI  TV TY+ + K LC  G +E AE++L EM+  G+      +N   
Sbjct: 334 EALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVV 393

Query: 157 K-EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
               RG    +  ++L R+M    L  PN       I       + +   EIW  V G G
Sbjct: 394 AWHLRGTGRLDLVLRLIREMLARFL-KPNDALMTACIQELCKSGKHEEAAEIWFQVLGKG 452

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           LG ++ +   LIHGLC+    KEA +    M+  G+   ++T+  + +G  ++       
Sbjct: 453 LGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKA------- 505

Query: 276 RLKKKLDEESITFGSEFQNYHFKP 299
               K+D E+I    +     FKP
Sbjct: 506 ---SKMD-EAIQLRDDMIKRGFKP 525



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 135/301 (44%), Gaps = 49/301 (16%)

Query: 1   MYTSLIYGW-CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           +Y  +I GW C+      A +   EM+ +G++  VVTYN++   +C+          E  
Sbjct: 318 IYNEMI-GWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCK----------EGE 366

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVL------------------HVYSRAHQPQLSLDK 101
           + +AEK+ DEM + G+    + F+ V+                   + +R  +P  +L  
Sbjct: 367 MEHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMT 426

Query: 102 LNFMK------------------EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
               +                   KG+   VAT ++++  LC    +++A ++L  MV +
Sbjct: 427 ACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNS 486

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           GV     TYN   +        + A++L   M + G   P++ ++NI +  +  L +++ 
Sbjct: 487 GVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGF-KPDLFTFNIFLHTYCNLGKVEE 545

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
           +  + + +K  GL PD+ +Y  +I G C+ +   +A +Y  E+++ GL P  V +  L  
Sbjct: 546 ILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIG 605

Query: 264 G 264
           G
Sbjct: 606 G 606



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 110/240 (45%), Gaps = 15/240 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+CK   +  A  +L E+++ G+ PN V YN L+ G  R  +          I 
Sbjct: 565 YGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGN----------IS 614

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMK--EKGICPTVATYSS 119
           +A  + D M+  GI+P   +++ ++  Y   H   +   K  F +   K I   V  Y+ 
Sbjct: 615 DAIGILDTMKYNGIQPTPVTYNSLM--YWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTI 672

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +++  C  G+I++A     EM   G+ P+  TY      Y    +   A KL+ +M   G
Sbjct: 673 IIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLG 732

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           + VP+  SYN LI  F  ++ +D + E   ++    L  D  SY   + G+      KEA
Sbjct: 733 I-VPDSVSYNTLISGFCEVDSLDKMVESPAEMSSQVLKQDGCSYNAFVDGITTPWCQKEA 791



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 13/245 (5%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMR-VRGIE 76
           A+ FL E+  RG  P++ T ++L+  +     L            A KVF EMR  + + 
Sbjct: 160 ADAFL-ELSARGASPSIKTCSILVEALGCGGQLDV----------ARKVFGEMRDGKTVA 208

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           PDV +++ ++    RA +   +   L  ++  GI PTV TY+ ++  LC  GR+E+A  L
Sbjct: 209 PDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRL 268

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
            G MV   V PS  T+          +       + ++M+  G+  PN   YN +IG   
Sbjct: 269 KGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGI-TPNEVIYNEMIGWHC 327

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
                    ++++++   G+   + +Y ++   LC++ + + A +   EM+  G++    
Sbjct: 328 RKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCS 387

Query: 257 TFETL 261
            F ++
Sbjct: 388 LFNSV 392



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 10/159 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+ +   I  A   L  M   G++P  VTYN L+  +C              +
Sbjct: 599 IYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAG----------LV 648

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              + VF +  V+ IE  V  ++I++  + +  +   ++     M  +GI P   TY+++
Sbjct: 649 EEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTL 708

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           +      G  E+A +L  EMV  G+ P + +YN     +
Sbjct: 709 MFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGF 747



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 65/138 (47%)

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
           G +  A +   E+   G  PS +T +   +        + A K++ +M++     P++H+
Sbjct: 154 GSLSRAADAFLELSARGASPSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHT 213

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           Y  +I        +D    +  +++ SG+ P + +Y +L+  LC+  + +EA +    M+
Sbjct: 214 YTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMV 273

Query: 248 EKGLLPQKVTFETLYRGL 265
           E  + P  VTF  L  GL
Sbjct: 274 EGRVRPSIVTFGILISGL 291



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 6/113 (5%)

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVK-GSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           P++ + +IL+       ++D+ R+++ +++ G  + PD+ +YT +I  LC   +   A  
Sbjct: 173 PSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAFA 232

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE-----ESITFG 289
              E+   G+ P  VT+  L   L +S  +    RLK ++ E       +TFG
Sbjct: 233 MLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFG 285


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 135/277 (48%), Gaps = 12/277 (4%)

Query: 2   YTSLIYGWCKINRIDMAER-FLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +TSLI G CKI   + A R FL  +     +PNV TY V++ G C+          E  +
Sbjct: 289 HTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCK----------EGKL 338

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE +   M  +G+ P+  +++ ++  + R      + + +N MK +G  P + TY+++
Sbjct: 339 ARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAI 398

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G+I+ A ++L      G+CP   TY     E+  +     A+ L+ QM E+  
Sbjct: 399 IGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENS- 457

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P++ +Y  +I M+    +M+  +++++     GL P   +YT +I G C   K   A 
Sbjct: 458 CHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSAL 517

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           + F  M++ G LP  +T+  L  GL +   L   R L
Sbjct: 518 KVFERMVQHGCLPDPITYGALISGLCKESRLEEARAL 554



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 121/260 (46%), Gaps = 12/260 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T ++  +C+  R        G M+E G  PNVV Y   ++G+C+R            ++ 
Sbjct: 220 TVVVRAFCRQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGY----------VKQ 269

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK-LNFMKEKGICPTVATYSSVV 121
           A  V +EM  +G++P+V + + ++    +    + +    L  +K     P V TY+ ++
Sbjct: 270 AFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMI 329

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++  AE LLG MV  G+ P+  TY      +      + A +L  +MK +G  
Sbjct: 330 GGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGF- 388

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+++YN +IG F    ++    ++       GL PD  +YTMLI   C++     A  
Sbjct: 389 LPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALD 448

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F +M E    P   T+ T+
Sbjct: 449 LFNQMAENSCHPDIDTYTTI 468



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 107/255 (41%), Gaps = 14/255 (5%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           + NR+  A   L E+   G+   V T N +L     R  L     F     +A + FD M
Sbjct: 125 ETNRLREATDMLLELRSHGLPLVVETANWVL-----RVGLRQRHHFA----HARQAFDGM 175

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
              G+ PD  SF  ++    +  + + +   L  M  +G     AT + VV+  C  GR 
Sbjct: 176 ---GVRPDARSFRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRF 232

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
            D   L G MV  G  P+   Y  +      R     A  +  +M   GL  PN++++  
Sbjct: 233 RDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGL-KPNVYTHTS 291

Query: 191 LIGMFMALNRMD-MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
           LI     +   +   R     VK S   P++ +YT++I G C++ K   A      M+E+
Sbjct: 292 LIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQ 351

Query: 250 GLLPQKVTFETLYRG 264
           GL P   T+ TL  G
Sbjct: 352 GLAPNTNTYTTLIDG 366



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 104/265 (39%), Gaps = 29/265 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------------- 48
           Y ++I G+CK  +I  A + L     +G+ P+ VTY +L+   C++              
Sbjct: 395 YNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMA 454

Query: 49  --SLHPSERFEKTI----------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
             S HP      TI            ++++FD+    G+ P   +++ ++  Y R  +  
Sbjct: 455 ENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKST 514

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L     M + G  P   TY +++  LC   R+E+A  L   M+   + P   T     
Sbjct: 515 SALKVFERMVQHGCLPDPITYGALISGLCKESRLEEARALFETMLDKHMVPCDVTCVTLA 574

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
            EY  R     A+     + +        H+ + L+    A++ +D       +V     
Sbjct: 575 YEYCRRDKTTIAVSFLDGLDKR----QQAHAADALVRKLSAVDNLDAASLFLKNVLDKHY 630

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQ 241
             D  +YT  I+   E  ++  A +
Sbjct: 631 AVDHATYTSFINSCYESNRYALASE 655



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 90/231 (38%), Gaps = 48/231 (20%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR-----AHQPQLSLDKLNFMKEKGICPTV 114
           +R A  +  E+R  G+   V + + VL V  R     AH  Q + D +      G+ P  
Sbjct: 129 LREATDMLLELRSHGLPLVVETANWVLRVGLRQRHHFAHARQ-AFDGM------GVRPDA 181

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            ++ ++V   C  GR E+A+ LL  M R G   S ++  C                    
Sbjct: 182 RSFRALVLGCCQEGRFEEADALLAAMWREGF--SLDSATC-------------------- 219

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
                          +++  F    R   V  ++  +   G  P++ +YT  + GLC++ 
Sbjct: 220 --------------TVVVRAFCRQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRG 265

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
             K+A     EM+ KGL P   T  +L  GL +        RL  KL + S
Sbjct: 266 YVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSS 316


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 149/319 (46%), Gaps = 31/319 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           Y +LI G+CK+NRID A R L  M  +   P+ VTYN+++  +C R  L  + +      
Sbjct: 157 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLL 216

Query: 56  -------------------FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  +  A K+ DEM  RG++PD+ +++ ++    +     
Sbjct: 217 SDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVD 276

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + + +  ++ KG  P V +Y+ +++ L + G+ E+ E+L+ +M      P+  TY+   
Sbjct: 277 RAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILI 336

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      AM L + MKE GL  P+ +SY+ LI  F    R+D+  E    +   G 
Sbjct: 337 TTLCRDGKIEEAMNLLKLMKEKGL-TPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGC 395

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS-DMLRTWR 275
            PD+ +Y  ++  LC+  K  +A + F ++ E G  P   ++ T++  L  S D +R   
Sbjct: 396 LPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALH 455

Query: 276 RL----KKKLDEESITFGS 290
            +       +D + IT+ S
Sbjct: 456 MILEMVSNGIDPDEITYNS 474



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 130/272 (47%), Gaps = 15/272 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI        +D A + L EM+ RG++P++ TYN ++ G+C+   +   +R  + IR
Sbjct: 227 YTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMV---DRAFEMIR 283

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N E       ++G EPDV S++I+L       + +     +  M  +   P V TYS ++
Sbjct: 284 NLE-------LKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILI 336

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDG 179
             LC  G+IE+A  LL  M   G+ P A +Y+     +   GR D   A++    M  DG
Sbjct: 337 TTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDV--AIEFLETMISDG 394

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C+P++ +YN ++       + D   EI+  +   G  P+  SY  +   L        A
Sbjct: 395 -CLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRA 453

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
               +EM+  G+ P ++T+ ++   L +  M+
Sbjct: 454 LHMILEMVSNGIDPDEITYNSMISCLCREGMV 485



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 133/270 (49%), Gaps = 17/270 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK   +D A   +  +  +G EP+V++YN+LL     RA L+  +  E    
Sbjct: 262 YNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILL-----RALLNQGKWEE---- 312

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             EK+  +M     +P+V ++SI++    R  + + +++ L  MKEKG+ P   +Y  ++
Sbjct: 313 -GEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLI 371

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR++ A E L  M+ +G  P    YN           A+ A++++ ++ E G C
Sbjct: 372 AAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG-C 430

Query: 182 VPNMHSYNILIGMFMAL-NRMDMVREIWN--DVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
            PN  SYN    MF AL +  D +R +    ++  +G+ PD  +Y  +I  LC +    +
Sbjct: 431 SPNSSSYNT---MFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDK 487

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           A +  V+M      P  VT+  +  G  ++
Sbjct: 488 AFELLVDMRSCEFHPSVVTYNIVLLGFCKA 517



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 127/259 (49%), Gaps = 12/259 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T LI G+  +  +  A R + E++E+  +P+V  YN L+NG C+             I +
Sbjct: 124 TKLIKGFFTLRNVPKAVRVM-EILEKFGQPDVFAYNALINGFCKM----------NRIDD 172

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A +V D MR +   PD  +++I++       +  L+L  L+ +      PTV TY+ +++
Sbjct: 173 ATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIE 232

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
                G +++A +LL EM+  G+ P   TYN   +        + A ++ R ++  G C 
Sbjct: 233 ATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKG-CE 291

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ SYNIL+   +   + +   ++   +      P++ +Y++LI  LC   K +EA   
Sbjct: 292 PDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNL 351

Query: 243 FVEMIEKGLLPQKVTFETL 261
              M EKGL P   +++ L
Sbjct: 352 LKLMKEKGLTPDAYSYDPL 370



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 131/296 (44%), Gaps = 45/296 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+       + +  E+ + +M     +PNVVTY++L+  +CR          +  I 
Sbjct: 297 YNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCR----------DGKIE 346

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M+ +G+ PD  S+  ++  + R  +  ++++ L  M   G  P +  Y++V+
Sbjct: 347 EAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVL 406

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
             LC  G+ + A E+ G++   G  P++ +YN  F       D   A+ +  +M  +G+ 
Sbjct: 407 ATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGID 466

Query: 181 -----------CV----------------------PNMHSYNILIGMFMALNRMDMVREI 207
                      C+                      P++ +YNI++  F   +R++   ++
Sbjct: 467 PDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDV 526

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            + + G+G  P+  +YT+LI G+       EA +   +++    + +  +F+ L+R
Sbjct: 527 LDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRINAISE-YSFKRLHR 581



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 74/142 (52%), Gaps = 14/142 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+++L   W   ++I      L EM+  G++P+ +TYN +++ +CR          E  +
Sbjct: 440 MFSAL---WSSGDKIRALHMIL-EMVSNGIDPDEITYNSMISCLCR----------EGMV 485

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++  +MR     P V +++IVL  + +AH+ + ++D L+ M   G  P   TY+ +
Sbjct: 486 DKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVL 545

Query: 121 VKCLCSCGRIEDAEELLGEMVR 142
           ++ +   G   +A EL  ++VR
Sbjct: 546 IEGIGFAGYRAEAMELANDLVR 567


>gi|296088471|emb|CBI37462.3| unnamed protein product [Vitis vinifera]
          Length = 673

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 15/238 (6%)

Query: 20  RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI---E 76
           R L EMIE G  P+  TYN  ++  C+             +  A ++F+ MR +G     
Sbjct: 394 RVLEEMIEMGHTPDSFTYNTAIDSFCKAG----------MVTEATELFEFMRTKGSTMSS 443

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           P   +++I++    ++ + +     +  M   G+ P V+TY  V++ +C  G++E+A + 
Sbjct: 444 PTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKF 503

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
           L EM   G  P   TYNCF       K +  A+ LY +M E G CVP++H++N+LI MF 
Sbjct: 504 LEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAG-CVPSVHTFNMLISMFF 562

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL-LP 253
            +   D   E W+++   G   D D+Y ++I GL    K ++AC    E++ KG+ LP
Sbjct: 563 EIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVVNKGIKLP 620



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 10/176 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G C   +++ A +FL EM  +G  P++VTYN  L+ +C            K   
Sbjct: 484 YKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCEN----------KKSE 533

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++  M   G  P V +F++++ ++    +P  + +  + M ++G      TY  ++
Sbjct: 534 EALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMI 593

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + L +C ++EDA  LL E+V  G+      ++CF  +     D     KL   M++
Sbjct: 594 EGLFNCNKMEDACFLLDEVVNKGIKLPYRKFDCFLMQLSMIGDLQAIHKLSEHMRK 649



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 10/195 (5%)

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC---PSAE 150
            P   +  L  M E G  P   TY++ +   C  G + +A EL   M   G     P+A+
Sbjct: 388 NPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAK 447

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWN 209
           TY                 KL + M   G+ +P++ +Y  +I GM +A  +++   +   
Sbjct: 448 TYAIMILALVQSDRTEECFKLIKDMINSGV-LPDVSTYKQVIEGMCLA-GKVEEAYKFLE 505

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ-- 267
           ++   G  PD+ +Y   +  LCE +K +EA   +  MIE G +P   TF  L     +  
Sbjct: 506 EMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIG 565

Query: 268 --SDMLRTWRRLKKK 280
                  TW  + K+
Sbjct: 566 EPDGAFETWHEMDKR 580


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 142/287 (49%), Gaps = 11/287 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSL+ G CK  R+D A   L EM+ +G+ PNVVTY V+++G+C+          E  + 
Sbjct: 343 YTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCK----------EGKVA 392

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ V   M   G++ +   ++ ++H +   +  + +LD LN MK KG+   V+ Y +++
Sbjct: 393 EADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLI 452

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   ++++A+ LL +M   G+ P+   Y             + A+ L  ++ + G  
Sbjct: 453 WGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGF- 511

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  LI        +      +N ++  GL P++ +YT LI G C+     +A  
Sbjct: 512 QPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMH 571

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
              EMI+KG+   KV + +L  G ++   L+    LK K+ E  +  
Sbjct: 572 LMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQL 618



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 134/267 (50%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI  + K  R++ A  + GEM  +GV  NVVT++  ++  C+          E  ++
Sbjct: 273 YNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCK----------EGLVQ 322

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F +MRVRG+ P+  +++ ++    +A +   ++  L+ M  +G+ P V TY+ +V
Sbjct: 323 EAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMV 382

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++ +A+ +L  M R GV  +   Y      +    ++  A+ L  QMK  G+ 
Sbjct: 383 DGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGME 442

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++  Y  LI       ++D  + + + + G GL P+   YT ++  L +  K  EA  
Sbjct: 443 L-DVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVA 501

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
              ++++ G  P  VT+  L  GL ++
Sbjct: 502 LLHKILDSGFQPNVVTYCALIDGLCKA 528



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 124/267 (46%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G+ K   ++  E+ + EM + G   +VVTYN L+N   +        R EK   
Sbjct: 238 YNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFG------RMEK--- 288

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A   F EM+ +G+  +V +FS  +  + +    Q ++     M+ +G+ P   TY+S+V
Sbjct: 289 -AYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLV 347

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR++DA  LL EMV  G+ P+  TY               A  +   M+  G+ 
Sbjct: 348 DGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVK 407

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              +    ++ G FM  N  +   ++ N +K  G+  D+  Y  LI GLC+ QK  EA  
Sbjct: 408 ANELLYTTLIHGHFMN-NNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKS 466

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
              +M   GL P  V + T+   L ++
Sbjct: 467 LLHKMAGCGLRPNTVIYTTIMDALFKA 493



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 115/233 (49%), Gaps = 11/233 (4%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
           PNV T+N++++ +C+          E  +  A  +F  M+  G  PDV +++ ++  Y +
Sbjct: 198 PNVFTFNIVIDFLCK----------EGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGK 247

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
               +     ++ M++ G    V TY++++ C    GR+E A    GEM R GV  +  T
Sbjct: 248 CGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVT 307

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           ++ F   +        AMKL+ QM+  G+ +PN  +Y  L+       R+D    + +++
Sbjct: 308 FSTFVDAFCKEGLVQEAMKLFAQMRVRGM-MPNEFTYTSLVDGTCKAGRLDDAIVLLDEM 366

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
              GL P++ +YT+++ GLC++ K  EA      M   G+   ++ + TL  G
Sbjct: 367 VHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHG 419



 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 113/246 (45%), Gaps = 11/246 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI+G CK  ++D A+  L +M   G+ PN V Y  +++      +L  + +  + +
Sbjct: 447 LYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMD------ALFKAGKESEAV 500

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               K+ D     G +P+V ++  ++    +A     ++   N M+E G+ P V  Y+++
Sbjct: 501 ALLHKILDS----GFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTAL 556

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G +  A  L+ EM+  G+      Y      Y  + +   A  L  +M E GL
Sbjct: 557 IDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGL 616

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            + +++ Y   I  F  +N M   R + +++ G+G+ PD   Y  LI    +    +EA 
Sbjct: 617 QL-DLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEAS 675

Query: 241 QYFVEM 246
               EM
Sbjct: 676 SLQNEM 681



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 10/176 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK   I  A     +M E G++PNV  Y  L++G C+  SL+          
Sbjct: 518 YCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLN---------- 567

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + +EM  +G+  D   ++ ++  Y +    Q +      M E G+   +  Y+  +
Sbjct: 568 KAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFI 627

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
              C+   +++A  +L EM+  G+ P    YNC  ++Y+   +   A  L  +M+ 
Sbjct: 628 SGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMES 683



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 6/129 (4%)

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+  T+N          +   A  L+ +MK  G C P++ +YN LI  +     ++ V +
Sbjct: 198 PNVFTFNIVIDFLCKEGELVEARALFVRMKAMG-CSPDVVTYNSLIDGYGKCGDLEEVEQ 256

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY---- 262
           + ++++ SG   D+ +Y  LI+   +  + ++A  YF EM  +G++   VTF T      
Sbjct: 257 LVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFC 316

Query: 263 -RGLIQSDM 270
             GL+Q  M
Sbjct: 317 KEGLVQEAM 325



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 11/176 (6%)

Query: 92  AHQPQLSLDKLNFMKEKGIC--PTVATYSSVVKCLCSC----GRIEDAEELLGEMVRNGV 145
            H+P L+   ++ +    +   P  +   SVV  L S     G ++DA   L  + +  V
Sbjct: 106 GHRPHLAASLVDLLHRAALALGPRRSALPSVVDTLLSLLADHGLLDDAVRALARVRQLRV 165

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P+  T N         +      +L+     D L VPN+ ++NI+I        +   R
Sbjct: 166 PPNTRTCNHILLRLARNRQGGLVRRLF-----DLLPVPNVFTFNIVIDFLCKEGELVEAR 220

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            ++  +K  G  PD+ +Y  LI G  +    +E  Q   EM + G     VT+  L
Sbjct: 221 ALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNAL 276


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 146/314 (46%), Gaps = 32/314 (10%)

Query: 2   YTSLIYGWCKINRIDMA-ERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEK- 58
           Y++L+ G CK  R+D A    LGE+  RG  P++VTY+ +++G+C+   L  + + FE+ 
Sbjct: 222 YSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM 281

Query: 59  --------------------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLS 98
                                +  A ++  +M      PDV +++ ++  + +  +   +
Sbjct: 282 SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDA 341

Query: 99  LDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158
            +    M    + P V T++S+V  LC  GR+EDA ELL E+ R G  P+  TYNC    
Sbjct: 342 YELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDG 401

Query: 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218
           Y        A +L    +  G  VPN  +YNIL+       R D   +  + +   G GP
Sbjct: 402 YCKSNQVRKAEELVADFRSRGF-VPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEG-GP 459

Query: 219 ---DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
               +  Y +++  LC   +  +A Q++ EMI++G +P   TF T+   L ++   +   
Sbjct: 460 CPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAH 519

Query: 276 RLKKKLDEESITFG 289
            L     EE I +G
Sbjct: 520 ELL----EEMIKYG 529



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 132/283 (46%), Gaps = 15/283 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G+C+   +D A R LG+M++    P+V+TY  L++  C+   L           
Sbjct: 290 YNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLD---------- 339

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F +M    + PDV +F+ ++       + + +L+ L  +  +G  PT+ TY+ VV
Sbjct: 340 DAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVV 399

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE--YRGRKDANGAMKLYRQM-KED 178
              C   ++  AEEL+ +    G  P+  TYN         GR D   A++   Q+  E 
Sbjct: 400 DGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQ--ALQYLDQLNSEG 457

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G C  ++  Y I++       R D   + + ++   G  P   ++  ++  LC+  + ++
Sbjct: 458 GPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQ 517

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           A +   EMI+ G  P   T + +     ++ M++    L  +L
Sbjct: 518 AHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASEL 560



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 127/296 (42%), Gaps = 43/296 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+  CK   +D A   L +M  RG+ P  + +NV++ G+CR   L          R
Sbjct: 83  YYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRL----------R 132

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  V+ +M      PD  +++ ++H  S+A + + ++  L  M      P   T + VV
Sbjct: 133 HALGVYRQMN-DAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVV 191

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG--RKDANGAMKLYRQMKE-- 177
           + LC   R++DA EL+ EM+  G+  +A TY+          R D   A+ L    +   
Sbjct: 192 QSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGF 251

Query: 178 -----------DGL-----------------CVPNMHSYNILIGMFMALNRMDMVREIWN 209
                      DGL                 C P   +YN LIG +     MD    +  
Sbjct: 252 TPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLG 311

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            +      PD+ +YT L+   C+  +  +A + F +M+   L P  VTF +L  GL
Sbjct: 312 KMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGL 367



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 123/278 (44%), Gaps = 16/278 (5%)

Query: 21  FLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80
            L E+ +RG+ P+ V  N +L  +C            +    A  +FD+M   G     T
Sbjct: 33  LLDEIRDRGLSPDPVELNTILAELCD----------ARDTTTAMALFDKMAELGAVNHTT 82

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
            ++++ H   +A     ++  L  MK +G+ P    ++ V+  LC  GR+  A  +  +M
Sbjct: 83  YYNLI-HPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQM 141

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
             +   P   TY               A+++ ++M      VP+  +  +++      +R
Sbjct: 142 -NDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVS-ARHVPDNTTLTVVVQSLCLGDR 199

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV-EMIEKGLLPQKVTFE 259
           +D  RE+  ++   G+  +  +Y+ L+ GLC+ ++  EA    + E+  +G  P  VT+ 
Sbjct: 200 VDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYS 259

Query: 260 TLYRGLIQSDMLRTWRRLKKKLD--EESITFGSEFQNY 295
           T+  GL ++  LR    + +++     +IT+ S    Y
Sbjct: 260 TVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGY 297


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 136/281 (48%), Gaps = 13/281 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G C   R    +  + EM+  G  PNVVT+N L+  +CR         FE+   
Sbjct: 228 YNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNG------LFERV-- 279

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +V  +M   G  PD+  ++ VL    +    +++ + L+ M   G+ P V  Y++V+
Sbjct: 280 --HQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVL 337

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAE-TYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           K LCS  R E AEELL EM  N  CP  + T+N     +         ++L  QM E G 
Sbjct: 338 KGLCSAERWEQAEELLAEMFDND-CPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHG- 395

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           CVP++ +Y  +I  F     +D    +   +   G  P+  SYT+++ GLC  ++W +A 
Sbjct: 396 CVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAE 455

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
               +MIE+G  P  VTF T+   L +  ++     L K++
Sbjct: 456 DLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQM 496



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 126/265 (47%), Gaps = 11/265 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY +++ G CK   +++A   L  M   G++PNVV YN +L G+C       +ER+E+  
Sbjct: 297 MYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCS------AERWEQ-- 348

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE++  EM       D  +F+I++  + +       ++ L  M E G  P V TY++V
Sbjct: 349 --AEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTV 406

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G I++A  LL  M   G  P+  +Y    K     +    A  L  QM E G 
Sbjct: 407 INGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQG- 465

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN  ++N +I        ++   E+   +  +G  PDL SY+ +I GL +  K  EA 
Sbjct: 466 CSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEAL 525

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
           +    M+ KG+ P  + + ++   L
Sbjct: 526 ELLNVMVNKGMSPNTIIYSSIASAL 550



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 128/280 (45%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+  +C+   +      L +M+E G  P+V+TY  ++NG C+          E  I 
Sbjct: 368 FNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCK----------EGLID 417

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M   G  P+  S++IVL     A +   + D ++ M E+G  P   T+++V+
Sbjct: 418 EAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVI 477

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +E A ELL +M+ NG  P   +Y+            + A++L   M   G+ 
Sbjct: 478 NFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGM- 536

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN   Y+ +        R++ V +++++++   +  D   Y  +I  LC++     A +
Sbjct: 537 SPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIE 596

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +   M+  G +P + T+  L RGL     ++  + +  +L
Sbjct: 597 FLAYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTEL 636



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 117/251 (46%), Gaps = 11/251 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+CK   ID A   L  M   G  PN ++Y ++L G+C       +ER+     
Sbjct: 403 YTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCS------AERWV---- 452

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE +  +M  +G  P+  +F+ V++   +    + +++ L  M   G  P + +YS+V+
Sbjct: 453 DAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVI 512

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G+ ++A ELL  MV  G+ P+   Y+            N  ++++  + +D   
Sbjct: 513 DGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNI-QDVTI 571

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +   YN +I         D   E    +  SG  P+  +YT+LI GL  +   KEA +
Sbjct: 572 RSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEAQE 631

Query: 242 YFVEMIEKGLL 252
              E+  KG L
Sbjct: 632 MLTELCSKGAL 642



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 126/288 (43%), Gaps = 11/288 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++   C   RI  A   L EM  RG  P    Y+V+L   C R             R
Sbjct: 118 YFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAACSRGG-------GGGFR 170

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLH-VYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSS 119
           +A +V  ++  RG   DV + ++VL+ V  +      +L  L  +     C P V +Y++
Sbjct: 171 SAVRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNA 230

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           V+K LC   R    ++L+ EMVR G  P+  T+N                ++  QM + G
Sbjct: 231 VLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHG 290

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C P++  Y  ++        +++  EI + +   GL P++  Y  ++ GLC  ++W++A
Sbjct: 291 -CTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQA 349

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKKKLDEESI 286
            +   EM +       VTF  L     Q+ ++ R    L++ L+   +
Sbjct: 350 EELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCV 397



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 111/264 (42%), Gaps = 9/264 (3%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A R L ++  RG   +V   N++LN VC +      +   + +R+    F      G +P
Sbjct: 172 AVRVLQDLHGRGCALDVGNCNLVLNAVCDQGG--SVDEALRLLRDLPTSF------GCDP 223

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           DV S++ VL     A +     D +  M   G  P V T+++++  LC  G  E   ++L
Sbjct: 224 DVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVL 283

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            +MV +G  P    Y               A ++  +M   GL  PN+  YN ++    +
Sbjct: 284 AQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGL-KPNVVCYNTVLKGLCS 342

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
             R +   E+  ++  +    D  ++ +L+   C+        +   +M+E G +P  +T
Sbjct: 343 AERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVIT 402

Query: 258 FETLYRGLIQSDMLRTWRRLKKKL 281
           + T+  G  +  ++     L K +
Sbjct: 403 YTTVINGFCKEGLIDEAVMLLKSM 426



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 7/177 (3%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA---NGA 168
           P   TY  VV+ LC+ GRI DA  +L EM R G  P    Y+   +    R        A
Sbjct: 113 PNAYTYFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSA 172

Query: 169 MKLYRQMKEDGLCVPNMHSYNILIGMFMAL-NRMDMVREIWNDVKGS-GLGPDLDSYTML 226
           +++ + +   G C  ++ + N+++         +D    +  D+  S G  PD+ SY  +
Sbjct: 173 VRVLQDLHGRG-CALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAV 231

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKKKLD 282
           + GLC  ++W        EM+  G  P  VTF TL   L ++ +  R  + L + +D
Sbjct: 232 LKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVD 288


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 132/265 (49%), Gaps = 11/265 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +I G C++  +D     LG+M E G+ PNVV Y  L++G C+             I   +
Sbjct: 157 MIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGD----------IERGK 206

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           ++F +M    +  +  +++++++ + +    +  ++    MK  GI P V TY+S++   
Sbjct: 207 QLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRC 266

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C+ G++ +A EL  EM   GV  +  TYN         +    A +L  +MK DGL  PN
Sbjct: 267 CNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLS-PN 325

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + SYN LI  + ++  +D    ++N +K SG  P L +Y +LI G  E +          
Sbjct: 326 LISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVR 385

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSD 269
           EM  +GL P KVT+  L   L++SD
Sbjct: 386 EMEARGLSPSKVTYTILMDALVRSD 410



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 148/312 (47%), Gaps = 26/312 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV----CRRASLHPSERF 56
           +YT+LI G CK   I+  ++   +M E  V  N  TY VL+NG      ++  +   E+ 
Sbjct: 188 VYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKM 247

Query: 57  EKT---------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           + T                     + NA ++FDEMR RG+  +V +++ ++    +  + 
Sbjct: 248 KLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRV 307

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +   +  MK  G+ P + +Y++++   CS G ++ A  L  +M  +G  PS  TYN  
Sbjct: 308 LEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNIL 367

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +   K++ G   + R+M+  GL  P+  +Y IL+   +  + ++   +I++ ++ +G
Sbjct: 368 IAGFSEAKNSAGVTDMVREMEARGLS-PSKVTYTILMDALVRSDNIEKAFQIYSSMEKAG 426

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           L  D+  Y +LIHGLC     KEA + F  + E  L P  V + T+  G  +        
Sbjct: 427 LVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRAL 486

Query: 276 RLKKKLDEESIT 287
           RL K++ E  + 
Sbjct: 487 RLLKEMGENGMV 498



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 11/253 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G C+  R+  AER +  M   G+ PN+++YN L++G C   +L           
Sbjct: 294 YNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLD---------- 343

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F++M+  G  P + +++I++  +S A       D +  M+ +G+ P+  TY+ ++
Sbjct: 344 KASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILM 403

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L     IE A ++   M + G+      Y           D   A KL++ + E  L 
Sbjct: 404 DALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHL- 462

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN   YN +I  +           +  ++  +G+ P++ SY   I  LC+ +KW EA  
Sbjct: 463 KPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEV 522

Query: 242 YFVEMIEKGLLPQ 254
              +MIE GL P 
Sbjct: 523 LLKDMIELGLKPS 535



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 119/259 (45%), Gaps = 11/259 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I   C   +++ A     EM ERGV  NVVTYN L+ G+C+          E+ + 
Sbjct: 259 YNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQ----------ERRVL 308

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE++   M+  G+ P++ S++ ++  Y        +    N MK  G  P++ATY+ ++
Sbjct: 309 EAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILI 368

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                        +++ EM   G+ PS  TY           +   A ++Y  M++ GL 
Sbjct: 369 AGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGL- 427

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V +++ Y +LI     +  M    +++  +    L P+   Y  +I+G C++     A +
Sbjct: 428 VADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALR 487

Query: 242 YFVEMIEKGLLPQKVTFET 260
              EM E G++P   ++ +
Sbjct: 488 LLKEMGENGMVPNVASYNS 506



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 119/244 (48%), Gaps = 12/244 (4%)

Query: 21  FLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80
           +  +MI RG+ P   T+N LL        L  S  FEK    A +VF+E +   ++ DV 
Sbjct: 104 YXNQMIGRGLVPGSNTFNNLL------ILLIKSNFFEK----AWRVFNETK-GNVKLDVY 152

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           SF I++             + L  M+E G+ P V  Y++++   C  G IE  ++L  +M
Sbjct: 153 SFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKM 212

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
               V  +  TY      +         ++LY +MK  G+ VPN+++YN +I       +
Sbjct: 213 GELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGI-VPNVYTYNSMICRCCNDGK 271

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           ++   E++++++  G+  ++ +Y  LI GLC++++  EA +    M   GL P  +++ T
Sbjct: 272 LNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNT 331

Query: 261 LYRG 264
           L  G
Sbjct: 332 LIDG 335



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+    + + I+ A +    M + G+  ++  Y VL++G+C    +  + +  K++ 
Sbjct: 399 YTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSL- 457

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 DEM ++   P+   ++ +++ Y +      +L  L  M E G+ P VA+Y+S +
Sbjct: 458 ------DEMHLK---PNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTI 508

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
             LC   +  +AE LL +M+  G+ PS   +N   K
Sbjct: 509 XILCKDEKWTEAEVLLKDMIELGLKPSISIWNMISK 544



 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 10/123 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI+G C +  +  A +    + E  ++PN V YN ++ G C+  S + + R  K  
Sbjct: 433 IYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLK-- 490

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                   EM   G+ P+V S++  + +  +  +   +   L  M E G+ P+++ ++ +
Sbjct: 491 --------EMGENGMVPNVASYNSTIXILCKDEKWTEAEVLLKDMIELGLKPSISIWNMI 542

Query: 121 VKC 123
            K 
Sbjct: 543 SKA 545


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 157/346 (45%), Gaps = 61/346 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y +LI G CK   I+ A + L EM  +G EP+ +TYN +L+G+CR   +  +++F     
Sbjct: 83  YNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMP 142

Query: 57  --------------------EKTIRNAEKVFDEMRV--RGIEPDVTSFSIVLHVYSRAHQ 94
                               E  +  A  +F  M +  R + PD+ +++ ++  + R  +
Sbjct: 143 SRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEK 202

Query: 95  PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
              ++     +  KG  P   TY+S++  L     +++AEE+  +MV +G  P+  TY+ 
Sbjct: 203 TDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSI 262

Query: 155 FFKEYRGRKDANGAMKLYRQMKE--------------DGLC------------------- 181
               +    +    ++LY +M E              D LC                   
Sbjct: 263 VLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIG 322

Query: 182 -VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VP++ +YNIL+      N +D   E+++ +  +G  PD+ SY+++++GLC+  K  +A 
Sbjct: 323 AVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDAR 382

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             F  MIE+ L+P  VTF  L  GL ++  L   + L   + E ++
Sbjct: 383 VLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNV 428



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 143/288 (49%), Gaps = 27/288 (9%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           ++I   CK  ++D A + L EM + G  P+VVTYN+LL+G+C+             +  A
Sbjct: 297 AVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKT----------NLVDKA 346

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVY---SRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            ++F  M   G  PD+ S+S+VL+     ++ H  ++  D+   M E+ + P V T++ +
Sbjct: 347 HELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDR---MIERKLVPDVVTFNIL 403

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G++++A++LL  M  + V P   T           K  + A++L++ M E G 
Sbjct: 404 MDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKG- 462

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWND-VKGSG-LGPDLDSYTMLIHGLCEKQKWKE 238
            V ++  +NI++       ++      +   VK  G   PD+ +YT L++ L E  +  +
Sbjct: 463 TVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQ 522

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGL------IQSDMLRTWRRLKKK 280
           A  YF +M   G  P  V + TL  GL      IQ+D  R  + +K+K
Sbjct: 523 AVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQAD--RLTQAMKEK 568



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 131/275 (47%), Gaps = 20/275 (7%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M E+G EP+VVTY+ +++G+C+             +  A ++ +EM  +G+ PDV +++I
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGK----------VTEALEMVEEMTEKGVNPDVATYTI 50

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           ++    RA +   + +  + M E+G       Y++++  LC    IE A +LL EM   G
Sbjct: 51  IVDRLCRAGKVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKG 110

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
             P   TYN            + A + +  M   G   P++ +YN   G+  AL +   V
Sbjct: 111 YEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYS-PDVVAYN---GLLDALYKEGKV 166

Query: 205 REIWN-----DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
            E W      D+    + PDL +Y  LI G C  +K  EA + F ++I KG +P  VT+ 
Sbjct: 167 AEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYN 226

Query: 260 TLYRGLI-QSDMLRTWRRLKKKLDEESITFGSEFQ 293
           ++  GL  +S+M       KK +D      G+ + 
Sbjct: 227 SILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYS 261



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 121/252 (48%), Gaps = 11/252 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+ G CK N +D A      M++ G  P++V+Y+V+LNG+C+   +H          
Sbjct: 330 YNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVH---------- 379

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +FD M  R + PDV +F+I++    +A +   + D L+ M E  + P   T ++++
Sbjct: 380 DARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLM 439

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMKEDGL 180
             LC   R ++A  L   MV  G       +N       R  K A   +     +K DG 
Sbjct: 440 HGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGE 499

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +Y  L+   +   R+D   + +  + GSG  PD  +Y  L++GL ++ +  +A 
Sbjct: 500 FSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQAD 559

Query: 241 QYFVEMIEKGLL 252
           +    M EKG L
Sbjct: 560 RLTQAMKEKGFL 571



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 122/264 (46%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I G CK  ++  A   + EM E+GV P+V TY ++++ +CR             + 
Sbjct: 13  YSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK----------VD 62

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++F +M  RG   +  +++ +++   +    + +   L  M  KG  P   TY++++
Sbjct: 63  EADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTIL 122

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK-EDGL 180
             LC  G++ +A++    M   G  P    YN              A  L++ M   D  
Sbjct: 123 SGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRK 182

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +YN LI  F  + + D   +++ DV   G  PD  +Y  ++ GL  K    EA 
Sbjct: 183 VAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAE 242

Query: 241 QYFVEMIEKGLLPQKVTFETLYRG 264
           + F +M++ G  P   T+  +  G
Sbjct: 243 EMFKKMVDSGCAPNGATYSIVLSG 266



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 142/303 (46%), Gaps = 28/303 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH---------P 52
           YT ++   C+  ++D A+    +MIERG   N V YN L+NG+C+  ++           
Sbjct: 48  YTIIVDRLCRAGKVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMA 107

Query: 53  SERFEKT----------------IRNAEKVFDEMRVRGIEPDVTSFSIVLH-VYSRAHQP 95
           S+ +E                  +  A++ FD M  RG  PDV +++ +L  +Y      
Sbjct: 108 SKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVA 167

Query: 96  QL-SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
           +   L K   M ++ + P + TY++++   C   + ++A +L  +++  G  P   TYN 
Sbjct: 168 EAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNS 227

Query: 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
                  + + + A +++++M + G C PN  +Y+I++     +  M    E++ ++   
Sbjct: 228 ILLGLARKSNMDEAEEMFKKMVDSG-CAPNGATYSIVLSGHCRVGNMARCLELYEEMTEK 286

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTW 274
              PD+     +I  LC+ +K  +A +   EM + G +P  VT+  L  GL +++++   
Sbjct: 287 RFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKA 346

Query: 275 RRL 277
             L
Sbjct: 347 HEL 349


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 146/303 (48%), Gaps = 46/303 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT +I G+C+   +  A R   EM+  G  P+VVTYN LLNG+C++  L          
Sbjct: 334 IYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRL---------- 383

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +AEK+ +EM  RG+ PD+ +F+ ++H Y R    + +L   + +  + + P V TY+S+
Sbjct: 384 LDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSL 443

Query: 121 VKCLC---------------------------------SC--GRIEDAEELLGEMVRNGV 145
           +  +C                                  C  G++EDA   L EMV+ G 
Sbjct: 444 IDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGN 503

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P+  TYN   K Y    +     +  ++M++D +  P++ ++N LI  ++    M    
Sbjct: 504 LPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNV-FPDLITFNTLIHGYIKEENMHGAF 562

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            ++N ++   + PD  +Y M+I+G  E+   ++A + F  M + G+ P + T+ +L  G 
Sbjct: 563 NVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGH 622

Query: 266 IQS 268
           + +
Sbjct: 623 VTA 625



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 132/252 (52%), Gaps = 11/252 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI+G+C+    + A +    ++ + + P+VVTYN L++G+CR+  L           
Sbjct: 405 FTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDL----------A 454

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +++D+M  R I P+  ++SI++  +    Q + +   L+ M +KG  P + TY+S++
Sbjct: 455 KANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSII 514

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C  G ++  ++ L +M ++ V P   T+N     Y   ++ +GA  ++  M+++ + 
Sbjct: 515 KGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKE-MV 573

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN++I  F     M     ++  +  SG+ PD  +Y  LI+G       K+A Q
Sbjct: 574 RPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQ 633

Query: 242 YFVEMIEKGLLP 253
              EMI +G  P
Sbjct: 634 LHDEMIHRGFAP 645



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 153/324 (47%), Gaps = 31/324 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S++ G CK  R D A+     M +  V P+V ++N+L+ G CR   +  + +F K ++
Sbjct: 230 YNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQ 289

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +                         A     EM+  G+ PD   +++V+  + RA    
Sbjct: 290 HRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMS 349

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   + M   G  P V TY++++  LC   R+ DAE+LL EM   GV P   T+    
Sbjct: 350 EALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLI 409

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y  + +   A++L+  +    L  P++ +YN LI        +    E+W+D+    +
Sbjct: 410 HGYCRQGNFENALQLFDTLLRQRL-RPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREI 468

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  +Y++LI   CEK + ++A  +  EM++KG LP   T+ ++ +G  +S  ++  ++
Sbjct: 469 LPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQ 528

Query: 277 LKKKLDEES-----ITFGSEFQNY 295
             +K+ +++     ITF +    Y
Sbjct: 529 FLQKMRQDNVFPDLITFNTLIHGY 552



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 123/257 (47%), Gaps = 11/257 (4%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           E N  T N++++  C+                A+ V  EM  R + PDV + ++++    
Sbjct: 154 EVNAYTLNIMVHSYCKTLEFD----------GADTVISEMEKRCVFPDVVTHNVLIDARF 203

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
           RA     ++  ++ M  +G+ P + TY+SV+K LC   R + A+E+   M +  V P   
Sbjct: 204 RAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVR 263

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           ++N     +    +   A+K Y++M+      P++ S++ LIG+F     MD       +
Sbjct: 264 SFNILIGGFCRVGEVKEAVKFYKEMQHR-YVTPDVVSFSCLIGLFSRRGEMDHAGAYLRE 322

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           +KG GL PD   YTM+I G C      EA +   EM+  G LP  VT+ TL  GL +   
Sbjct: 323 MKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHR 382

Query: 271 LRTWRRLKKKLDEESIT 287
           L    +L  +++E  +T
Sbjct: 383 LLDAEKLLNEMEERGVT 399



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 132/264 (50%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI    +   +D A   +  M  RG++P +VTYN +L G+C+        RF+K   
Sbjct: 195 HNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKH------RRFDK--- 245

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A++VF  M    + PDV SF+I++  + R  + + ++     M+ + + P V ++S ++
Sbjct: 246 -AKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLI 304

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G ++ A   L EM   G+ P    Y      +      + A+++  +M   G C
Sbjct: 305 GLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFG-C 363

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +YN L+      +R+    ++ N+++  G+ PDL ++T LIHG C +  ++ A Q
Sbjct: 364 LPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQ 423

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F  ++ + L P  VT+ +L  G+
Sbjct: 424 LFDTLLRQRLRPDVVTYNSLIDGM 447



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 140/291 (48%), Gaps = 16/291 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +++ +CK    D A+  + EM +R V P+VVT+NVL++   R             +  A 
Sbjct: 163 MVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGD----------VDAAI 212

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            + D M  RG++P + +++ VL    +  +   + +    M +  + P V +++ ++   
Sbjct: 213 ALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGF 272

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G +++A +   EM    V P   +++C    +  R + + A    R+MK  GL VP+
Sbjct: 273 CRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGL-VPD 331

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
              Y ++IG F     M     + +++ G G  PD+ +Y  L++GLC++ +  +A +   
Sbjct: 332 GVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLN 391

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGS 290
           EM E+G+ P   TF TL  G  +        +     L+++L  + +T+ S
Sbjct: 392 EMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNS 442



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 87/221 (39%), Gaps = 38/221 (17%)

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS----------------- 119
           P    F +++  Y+++ +P+ + +    + +  + P  A+ S+                 
Sbjct: 85  PQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRV-PVPASASNALLAVLSRAGWPHLAQE 143

Query: 120 -------------------VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160
                              +V   C     + A+ ++ EM +  V P   T+N       
Sbjct: 144 AYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARF 203

Query: 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
              D + A+ L   M   GL  P + +YN ++       R D  +E++  +    + PD+
Sbjct: 204 RAGDVDAAIALVDSMANRGL-KPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDV 262

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            S+ +LI G C   + KEA +++ EM  + + P  V+F  L
Sbjct: 263 RSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCL 303


>gi|242041823|ref|XP_002468306.1| hypothetical protein SORBIDRAFT_01g043390 [Sorghum bicolor]
 gi|241922160|gb|EER95304.1| hypothetical protein SORBIDRAFT_01g043390 [Sorghum bicolor]
          Length = 519

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 126/257 (49%), Gaps = 14/257 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ GW      + AE F+ EM E GVEP++VTYN L++  C+           + + 
Sbjct: 219 FNILLSGW---KSAEDAEAFVAEMRELGVEPDLVTYNSLIDCHCK----------NRDVE 265

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ DEMR + I PD+ +++ ++       QP  + D L  M E G  P V  Y++ +
Sbjct: 266 KAYKLLDEMREKDISPDIITYTSLIGGLGLIGQPDKARDLLKEMHELGCSPDVPAYNAAI 325

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +      R+ DA  L+ +M   G+ P+  TYN FF+ Y    D     +LY +M+ +G C
Sbjct: 326 RNFVIAKRLGDAFALMDQMASKGLMPNPTTYNLFFRCYYWAFDIGSTWRLYERMRSEG-C 384

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  S   +I +     ++    E+W+D+  +  G       +L   LC++ K +E  +
Sbjct: 385 FPNTQSCMFIIRLCHRYGKVGQALELWSDMVSNRFGSFTLVSDVLFDLLCDEGKLEEVER 444

Query: 242 YFVEMIEKGLLPQKVTF 258
            F +M+E G  P  V F
Sbjct: 445 CFCQMVEFGQKPSNVAF 461



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 2/146 (1%)

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           EDAE  + EM   GV P   TYN     +   +D   A KL  +M+E  +  P++ +Y  
Sbjct: 230 EDAEAFVAEMRELGVEPDLVTYNSLIDCHCKNRDVEKAYKLLDEMREKDIS-PDIITYTS 288

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           LIG    + + D  R++  ++   G  PD+ +Y   I      ++  +A     +M  KG
Sbjct: 289 LIGGLGLIGQPDKARDLLKEMHELGCSPDVPAYNAAIRNFVIAKRLGDAFALMDQMASKG 348

Query: 251 LLPQKVTFETLYRGLIQS-DMLRTWR 275
           L+P   T+   +R    + D+  TWR
Sbjct: 349 LMPNPTTYNLFFRCYYWAFDIGSTWR 374


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 132/252 (52%), Gaps = 11/252 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI+G+C+    + A +    ++ + + P+VV YN L++G+CR+  L           
Sbjct: 405 FTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDL----------A 454

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +++D+M  R I P+  ++SI++  +    Q + +   L+ M  KG  P + TY+S++
Sbjct: 455 KANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSII 514

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C  G ++  ++ L +M+++ + P   T+N     Y   ++ +GA  ++  M+++ + 
Sbjct: 515 KGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKE-MV 573

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN++I  F     M+    ++  +  SG+ PD  +Y  LI+G       KEA Q
Sbjct: 574 QPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQ 633

Query: 242 YFVEMIEKGLLP 253
              EM+ +G  P
Sbjct: 634 LHDEMMHRGFAP 645



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 149/299 (49%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI G+C++  ++ A +F  EM +RGV P+VV+++ L+     R  +           
Sbjct: 265 FNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMD---------- 314

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A     EM+  G+ PD   +++V+  + RA     +L   + M   G  P V TY++++
Sbjct: 315 HAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLL 374

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R+ DAEELL EM   GV P   T+      Y    +   A++L+  +    L 
Sbjct: 375 NGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRL- 433

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN LI        +    E+W+D+    + P+  +Y++LI   CEK + +EA  
Sbjct: 434 RPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFG 493

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES-----ITFGSEFQNY 295
           +  EM+ KG LP  +T+ ++ +G  +S  ++  ++  +K+ +++     ITF +    Y
Sbjct: 494 FLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGY 552



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 134/271 (49%), Gaps = 11/271 (4%)

Query: 17  MAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIE 76
           +AE     ++    E N  T N++++  C+      S  F+K    A+ V  EM  R + 
Sbjct: 140 LAEEAYRLVLSSDSEVNAYTLNIMVHSYCK------SLEFDK----ADTVISEMEKRCVF 189

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           PDV + ++++    RA     ++  ++ M  KG+ P + T++SV+K LC   R + A+E+
Sbjct: 190 PDVVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEV 249

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
              M +  V P   ++N     +    +   AMK Y++M++ G+  P++ S++ LIG+F 
Sbjct: 250 FRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGV-TPDVVSFSCLIGLFS 308

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
              +MD       ++KG GL PD   YTM+I G C      EA +   EM+  G LP  V
Sbjct: 309 TRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVV 368

Query: 257 TFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           T+ TL  GL +   L     L  ++ E  +T
Sbjct: 369 TYNTLLNGLCKQHRLLDAEELLNEMKERGVT 399



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 145/303 (47%), Gaps = 46/303 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT +I G+C+   +  A R   EM+  G  P+VVTYN LLNG+C++  L          
Sbjct: 334 IYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRL---------- 383

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR--------------AHQ---PQL------ 97
            +AE++ +EM+ RG+ PD+ +F+ ++H Y R               HQ   P +      
Sbjct: 384 LDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSL 443

Query: 98  --------SLDKLN----FMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
                    L K N     M  + I P   TYS ++   C  G++E+A   L EMV  G 
Sbjct: 444 IDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGN 503

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P+  TYN   K Y    +     +  ++M +D + +P++ ++N LI  ++    M    
Sbjct: 504 LPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNI-LPDLITFNTLIHGYIKEENMHGAF 562

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            ++N ++   + PD  +Y M+I+G  E+   +EA + F +M   G+ P + T+ +L  G 
Sbjct: 563 NVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGH 622

Query: 266 IQS 268
           + +
Sbjct: 623 VTA 625



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 129/260 (49%), Gaps = 11/260 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +++ +CK    D A+  + EM +R V P+VVT+NVL++   R             +  A 
Sbjct: 163 MVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGD----------VDAAI 212

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            + D M  +G++P + +F+ VL    +  +   + +    M +  + P V +++ ++   
Sbjct: 213 ALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGF 272

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G +E+A +   EM + GV P   +++C    +  R   + A    R+MK  GL VP+
Sbjct: 273 CRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGL-VPD 331

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
              Y ++IG F     M     + +++ G G  PD+ +Y  L++GLC++ +  +A +   
Sbjct: 332 GVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLN 391

Query: 245 EMIEKGLLPQKVTFETLYRG 264
           EM E+G+ P   TF TL  G
Sbjct: 392 EMKERGVTPDLCTFTTLIHG 411



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 135/264 (51%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI    +   +D A   +  M  +G++P +VT+N +L G+C+        RF+K   
Sbjct: 195 HNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKH------RRFDK--- 245

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A++VF  M    + PDV SF+I++  + R  + + ++     M+++G+ P V ++S ++
Sbjct: 246 -AKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLI 304

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               + G+++ A   L EM   G+ P    Y      +      + A+++  +M   G C
Sbjct: 305 GLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLG-C 363

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +YN L+      +R+    E+ N++K  G+ PDL ++T LIHG C    +++A Q
Sbjct: 364 LPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQ 423

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F  ++ + L P  V + +L  G+
Sbjct: 424 LFDTLLHQRLRPDVVAYNSLIDGM 447


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 147/292 (50%), Gaps = 25/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSL+ G CK  R+D A   L EM+ +G+ PNVVTY V+++G+C+          E  + 
Sbjct: 342 YTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCK----------EGKVA 391

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ V   M   G++ +   ++ ++H +      + +LD LN MK KG+   V+ Y +++
Sbjct: 392 VADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLI 451

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   ++++A+ LL +M   G+ P+   Y      +      + A+ L  ++ + GL 
Sbjct: 452 WGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGL- 510

Query: 182 VPNMHSYNILI-------GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
            PN+ +Y  LI        ++ A++  D +RE+       GL P++  YT LI G C+  
Sbjct: 511 QPNVVTYCALIDGLCKAGSIYEAISHFDKMREL-------GLDPNVQVYTTLIDGFCKIG 563

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              +A     EM++KG+   KV + +L  G ++   L+    LK K+ E  +
Sbjct: 564 SLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGL 615



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 131/267 (49%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI  + K   I+ A  + GEM   GV  NVVT +  ++  C+          E  +R
Sbjct: 272 YNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCK----------EGLVR 321

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F +MRVRG+ P+  +++ ++    +A +   ++  L+ M  +G+ P V TY+ +V
Sbjct: 322 EAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMV 381

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++  A+++L  M R GV  +   Y      +   K++  A+ L  +MK  G+ 
Sbjct: 382 DGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGME 441

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++  Y  LI     + ++D  + + + +   GL P+   YT ++    +  K  EA  
Sbjct: 442 L-DVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVA 500

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
              ++ + GL P  VT+  L  GL ++
Sbjct: 501 LLHKIPDSGLQPNVVTYCALIDGLCKA 527



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 122/269 (45%), Gaps = 15/269 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           Y SLI G+ K   ++  E  + EM + G   +VVTYN L+N  C          F K   
Sbjct: 237 YNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALIN--C----------FSKFGW 284

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           I  A   F EM+  G+  +V + S  +  + +    + ++     M+ +G+ P   TY+S
Sbjct: 285 IEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTS 344

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +V   C  GR++DA  LL EMV  G+ P+  TY               A  +   M+  G
Sbjct: 345 LVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAG 404

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +    +    ++ G FM  N  +   ++ N++K  G+  D+  Y  LI GLC+ QK  EA
Sbjct: 405 VKANELLYTTLIHGHFMNKNS-ERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEA 463

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
                +M + GL P  V + T+     ++
Sbjct: 464 KSLLHKMDDCGLRPNTVIYTTIMDAFFKA 492



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 15/248 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI+G CK+ ++D A+  L +M + G+ PN V Y  +++             F K  
Sbjct: 446 LYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDA------------FFKAG 493

Query: 61  RNAEKV--FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           + +E V    ++   G++P+V ++  ++    +A     ++   + M+E G+ P V  Y+
Sbjct: 494 KESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYT 553

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++   C  G +  A  L+ EMV  G+      Y      +  + D  GA  L  +M E 
Sbjct: 554 TLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIET 613

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           GL + +++ Y   I  F  +N M   R + +++ G+G+ PD  +Y  LI    +    +E
Sbjct: 614 GLQL-DLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEE 672

Query: 239 ACQYFVEM 246
           A     EM
Sbjct: 673 ASSLQNEM 680



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 115/240 (47%), Gaps = 11/240 (4%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           + E    PNV T+N++++ +C++  L            A  +F  M+  G  PDV +++ 
Sbjct: 190 LFEHLPAPNVFTFNIVIDFLCKQGEL----------VEARALFVRMKAMGCSPDVVTYNS 239

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           ++  Y +  + +     ++ M++ G    V TY++++ C    G IE A    GEM R G
Sbjct: 240 LIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLG 299

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           V  +  T + F   +        AMKL+ QM+  G+ +PN  +Y  L+       R+D  
Sbjct: 300 VMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGM-MPNEFTYTSLVDGTCKAGRLDDA 358

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             + +++   GL P++ +YT+++ GLC++ K   A      M   G+   ++ + TL  G
Sbjct: 359 IVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHG 418



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 45/212 (21%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+++  + K  +   A   L ++ + G++PNVVTY  L++G+C+  S++         
Sbjct: 481 IYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIY--------- 531

Query: 61  RNAEKVFDEMRVRGIEPDVT-------------SFSIVLHVYSRAHQPQLSLDKLNF--- 104
             A   FD+MR  G++P+V              S S  +H+ +      +SLDK+ +   
Sbjct: 532 -EAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSL 590

Query: 105 -------------------MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
                              M E G+   +  Y+  +   C+   +++A  +L EM+  G+
Sbjct: 591 IDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGI 650

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
            P    YNC  ++Y+   +   A  L  +M+ 
Sbjct: 651 TPDKTAYNCLIRKYQKLGNMEEASSLQNEMES 682



 Score = 44.3 bits (103), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+  T+N        + +   A  L+ +MK  G C P++ +YN LI  +     ++ V  
Sbjct: 197 PNVFTFNIVIDFLCKQGELVEARALFVRMKAMG-CSPDVVTYNSLIDGYGKCGELEEVEL 255

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           + ++++ SG   D+ +Y  LI+   +    ++A  YF EM   G++   VT  T      
Sbjct: 256 LVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFC 315

Query: 267 QSDMLRTWRRL 277
           +  ++R   +L
Sbjct: 316 KEGLVREAMKL 326


>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 863

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 128/260 (49%), Gaps = 10/260 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI  + +  R + +   L  M    + P+++TYN ++N  C R  L     +E  + 
Sbjct: 179 YTALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVIN-ACARGGLD----WEGLL- 232

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F EMR  GI+PD+ +++ +L   +       +      M + GI P + TYS +V
Sbjct: 233 ---GLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLV 289

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +      R+E   +LL EM   G  P   +YN   + Y        AM ++ QM+  G C
Sbjct: 290 ETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAG-C 348

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN ++Y++L+ +F    R D VR+++ ++K S   PD  +Y +LI    E   +KE   
Sbjct: 349 TPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVT 408

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F +M+E+ + P   T+E +
Sbjct: 409 LFHDMVEENIEPDMETYEGI 428



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 109/216 (50%), Gaps = 6/216 (2%)

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           +VFDEM  +G+   V S++ +++ Y R  + + SL+ L+ MK   I P++ TY++V+   
Sbjct: 162 EVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINA- 220

Query: 125 CSCGRIEDAEELLG---EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           C+ G + D E LLG   EM   G+ P   TYN        R   + A  ++R M  DG  
Sbjct: 221 CARGGL-DWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMN-DGGI 278

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++ +Y+ L+  F  L R++ V ++ +++   G  PD+ SY +L+    +    KEA  
Sbjct: 279 VPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMG 338

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F +M   G  P   T+  L     QS      R+L
Sbjct: 339 VFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQL 374



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 123/274 (44%), Gaps = 16/274 (5%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           +M+E  +EP++ TY  ++   C +  LH          +A K+   M    I P   +++
Sbjct: 412 DMVEENIEPDMETYEGIIF-ACGKGGLH---------EDARKILQYMTANDIVPSSKAYT 461

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            V+  + +A   + +L   N M E G  P++ TY S++      G ++++E +L  +V +
Sbjct: 462 GVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDS 521

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+  + +T+N   + Y+       A+K Y  M E   C P+  +   ++ ++     +D 
Sbjct: 522 GIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDM-EKSRCDPDERTLEAVLSVYSFARLVDE 580

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            RE + ++K S + P +  Y M++    + ++W +  +   EM+   +         + +
Sbjct: 581 CREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIK 640

Query: 264 GLIQSDMLRTWRRLK---KKLDEESITFGSEFQN 294
           G    D    W+ ++    KL+ E    G  F N
Sbjct: 641 GDYDDD--SNWQIVEYVLDKLNSEGCGLGIRFYN 672



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 125/288 (43%), Gaps = 32/288 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH---------- 51
           Y+ L+  + K+ R++     L EM   G  P++ +YNVLL    +  S+           
Sbjct: 285 YSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQ 344

Query: 52  -----PSERFEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                P+      + N            ++F EM+    +PD  +++I++ V+      +
Sbjct: 345 AAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFK 404

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
             +   + M E+ I P + TY  ++      G  EDA ++L  M  N + PS++ Y    
Sbjct: 405 EVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVI 464

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE---IWNDVKG 213
           + +        A+  +  M E G   P++ +Y+ L+  F    R  +V+E   I + +  
Sbjct: 465 EAFGQAALYEEALVAFNTMHEVG-SNPSIETYHSLLYSFA---RGGLVKESEAILSRLVD 520

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           SG+  + D++   I    +  K++EA + +V+M +    P + T E +
Sbjct: 521 SGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAV 568



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 56/114 (49%)

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
           S   +   FKE+ GR D   +++L++ M+    C PN H Y I+I +      +D   E+
Sbjct: 104 SLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEV 163

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           ++++   G+   + SYT LI+      +++ + +    M    + P  +T+ T+
Sbjct: 164 FDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTV 217



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 12/220 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+Y + +   +  +E  L  +++ G+  N  T+N  +    +        +FE+ + 
Sbjct: 495 YHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGG------KFEEAV- 547

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K + +M     +PD  +   VL VYS A       ++   MK   I P++  Y  ++
Sbjct: 548 ---KTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMML 604

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK-EYRGRKDANGAMKLYRQMKEDGL 180
                  R +D  ELL EM+ N V    +      K +Y    +      +  ++  +G 
Sbjct: 605 AVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEG- 663

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
           C   +  YN L+     L + +    + N+    GL P+L
Sbjct: 664 CGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLFPEL 703


>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 562

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 130/268 (48%), Gaps = 30/268 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+  +CK  R+  A+  L  M+++G++P+VVTYN L++  C              + 
Sbjct: 314 FNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYC----------LVNEVN 363

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F+ M  RG+  +V S+SI+++ + +      ++     M  K I P V TYSS++
Sbjct: 364 KAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLI 423

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GRI  A EL  EM   G  P   T                   L RQ+K+ G+ 
Sbjct: 424 DGLCKSGRISYALELNDEMHDRGQQPDIIT-------------------LTRQLKDQGI- 463

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PNM +Y ILI       R++  R I+ D+   G    +++YT++IHG C K  + EA  
Sbjct: 464 RPNMFTYTILIDGLCKGGRLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMT 523

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              +M +   +P  VT+E + R L  +D
Sbjct: 524 LLSKMKDNCCIPNAVTYEIIIRSLFDND 551



 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 117/229 (51%), Gaps = 11/229 (4%)

Query: 30  VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89
           ++PN+V YN +++ +C+          +K   +A  ++ EM  + I PDV +++ +++ +
Sbjct: 237 LQPNLVMYNTIIDSMCK----------DKLDNDAFDLYSEMVSKRIFPDVNTYNALINGF 286

Query: 90  SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
               + + ++   N M  + I P V T++ +V   C  GR+++A+  L  M++ G+ P  
Sbjct: 287 CIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDV 346

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
            TYN     Y    + N A  ++  M   G+   N+ SY+I+I  F  +  +D   +++ 
Sbjct: 347 VTYNSLMDRYCLVNEVNKAKSIFNTMSHRGV-TANVRSYSIMINRFCKIKMVDQAMKLFK 405

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
           ++    + P++ +Y+ LI GLC+  +   A +   EM ++G  P  +T 
Sbjct: 406 EMHHKQIFPNVITYSSLIDGLCKSGRISYALELNDEMHDRGQQPDIITL 454



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 106/205 (51%), Gaps = 13/205 (6%)

Query: 71  RVRG--IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
           RV G  ++P++  ++ ++    +      + D  + M  K I P V TY++++   C  G
Sbjct: 231 RVDGKLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIVG 290

Query: 129 RIEDAEELLGEMVRNGVCPSAETYN----CFFKEYRGRKDANG-AMKLYRQMKEDGLCVP 183
           +++DA  L  +M    + P   T+N     F KE R ++  NG AM + + +K      P
Sbjct: 291 KLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIK------P 344

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++ +YN L+  +  +N ++  + I+N +   G+  ++ SY+++I+  C+ +   +A + F
Sbjct: 345 DVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLF 404

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQS 268
            EM  K + P  +T+ +L  GL +S
Sbjct: 405 KEMHHKQIFPNVITYSSLIDGLCKS 429



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 26/152 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG----------------VEPNVVTYNVLLNGVC 45
           Y+SLI G CK  RI  A     EM +RG                + PN+ TY +L++G+C
Sbjct: 419 YSSLIDGLCKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLC 478

Query: 46  RRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFM 105
           +   L           +A  +F+++ V+G    V ++++++H +        ++  L+ M
Sbjct: 479 KGGRL----------EDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKM 528

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           K+    P   TY  +++ L      + AE   
Sbjct: 529 KDNCCIPNAVTYEIIIRSLFDNDENDKAENFF 560


>gi|225447826|ref|XP_002268129.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Vitis vinifera]
          Length = 679

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 138/259 (53%), Gaps = 15/259 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV--CRRASLHPSERFEKT 59
           YT L+ GWC+I  +  A R   EMI++G +P+++ ++ +L G+  C++ S          
Sbjct: 375 YTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKS---------- 424

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
             +A K+F+ M+ +G  P+V +++I++    +  + Q +++  + M + G  P  A Y+ 
Sbjct: 425 --DAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTC 482

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++    +  +++    LL EM   G      TYN   K    R+  + A+++Y++M ++G
Sbjct: 483 LITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNG 542

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +    +H+YN+++  +      +M   +W ++   G  PD +SY + I GL    + +EA
Sbjct: 543 I-QSTLHTYNMMMKSYFYTRNYEMGCAVWEEMGRKGCCPDDNSYIVFIGGLIRHGRSEEA 601

Query: 240 CQYFVEMIEKGLLPQKVTF 258
           C+Y  EMIEKG+   ++ +
Sbjct: 602 CRYLEEMIEKGMKAPQLDY 620



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 99/243 (40%), Gaps = 8/243 (3%)

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH---QPQLSLDKLNFMKEKGICPTVATY 117
           + A  VF+ M+    +  V + + +L    RA    + Q   +KL    E    P + TY
Sbjct: 320 KKAVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKL----EDRFTPNLRTY 375

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + ++   C    + +A     EM+  G  P    ++   +     K  + A+KL+  MK 
Sbjct: 376 TVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKA 435

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G   PN+ +Y ILI       +M    E ++++  SG  PD   YT LI G   ++K  
Sbjct: 436 KGPS-PNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMD 494

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
           +      EM EKG      T+  L + +    M     R+ KK+ +  I       N   
Sbjct: 495 KVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMM 554

Query: 298 KPY 300
           K Y
Sbjct: 555 KSY 557



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 10/179 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G+    ++D     L EM E+G   +  TYN L+  +  R          +  
Sbjct: 479 VYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNR----------QMP 528

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A +++ +M   GI+  + ++++++  Y      ++       M  KG CP   +Y   
Sbjct: 529 DDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYTRNYEMGCAVWEEMGRKGCCPDDNSYIVF 588

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +  L   GR E+A   L EM+  G+      YN F  ++      +   +L R+MK +G
Sbjct: 589 IGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYNKFAADFSRAGKPDILEELARKMKFEG 647



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 115/252 (45%), Gaps = 14/252 (5%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G   N  TYN +++ + R      + +FE  +     +  EM  +G+   + +FSI +  
Sbjct: 264 GFTHNSRTYNAMMSVLGR------TRQFESMM----GMLGEMGEKGLL-TMETFSIAIKA 312

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           ++ A + + ++     MK       V T + ++  L      ++A+ L  E + +   P+
Sbjct: 313 FAAAKERKKAVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALF-EKLEDRFTPN 371

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             TY      +   K+   A + + +M + G     +  + +L G+     + D ++ ++
Sbjct: 372 LRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIK-LF 430

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL-IQ 267
             +K  G  P++ +YT+LI  LC++ K +EA +YF EM++ G  P    +  L  G   Q
Sbjct: 431 EVMKAKGPSPNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQ 490

Query: 268 SDMLRTWRRLKK 279
             M + +  LK+
Sbjct: 491 KKMDKVYALLKE 502


>gi|297839201|ref|XP_002887482.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333323|gb|EFH63741.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 490

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 140/284 (49%), Gaps = 16/284 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L +GWC++     A + L EMI+ G +P   TY   ++  C+             + 
Sbjct: 169 FNVLFFGWCRVRDPKKAMKLLEEMIQAGHKPENFTYCAAIDTFCQAG----------MVD 218

Query: 62  NAEKVFDEMRVRGI---EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A  +F+ M  +G     P   +F++++   ++  + +   + +  M   G  P V+TY 
Sbjct: 219 EAADLFEFMITKGSVVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYK 278

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            V++ +C  G++E+A + L EM   G  P   TYNCF +     + ++ A+KLY +M E 
Sbjct: 279 DVIEGMCMAGKVEEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKSDEALKLYGRMVE- 337

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
             C P++ +YN+LI MF  ++  D     W ++       D+++Y ++I+GL +  + KE
Sbjct: 338 SRCAPSVQTYNMLISMFFEMDDPDGAFNTWKEMDERDCVQDIETYCVMINGLFDCHRAKE 397

Query: 239 ACQYFVEMIEKGL-LPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           AC    E++ KGL LP +  F++    L     L+   +L + +
Sbjct: 398 ACFLLEEVVNKGLKLPYR-AFDSFLMRLSTVGNLKAIHKLSEHM 440



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 120/263 (45%), Gaps = 21/263 (7%)

Query: 26  IERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85
           I    +P +  +N+LL+ +C+             ++  E +   MR R ++PD T+F+++
Sbjct: 124 IRVKTQPEINAFNMLLDALCKCG----------LVKEGEALLRRMRHR-VKPDATTFNVL 172

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG- 144
              + R   P+ ++  L  M + G  P   TY + +   C  G +++A +L   M+  G 
Sbjct: 173 FFGWCRVRDPKKAMKLLEEMIQAGHKPENFTYCAAIDTFCQAGMVDEAADLFEFMITKGS 232

Query: 145 --VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY-NILIGMFMALNRM 201
               P+A+T+            A    +L  +M   G C+P++ +Y +++ GM MA  ++
Sbjct: 233 VVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTG-CLPDVSTYKDVIEGMCMA-GKV 290

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   +  +++   G  PD+ +Y   +  LCE +K  EA + +  M+E    P   T+  L
Sbjct: 291 EEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKSDEALKLYGRMVESRCAPSVQTYNML 350

Query: 262 YRGLIQSD----MLRTWRRLKKK 280
                + D       TW+ + ++
Sbjct: 351 ISMFFEMDDPDGAFNTWKEMDER 373



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 10/176 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G C   +++ A +FL EM  +G  P++VTYN  L  +C            +   
Sbjct: 277 YKDVIEGMCMAGKVEEAYKFLDEMSNKGYPPDIVTYNCFLRVLCE----------NRKSD 326

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K++  M      P V ++++++ ++     P  + +    M E+     + TY  ++
Sbjct: 327 EALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTWKEMDERDCVQDIETYCVMI 386

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
             L  C R ++A  LL E+V  G+      ++ F        +     KL   MK+
Sbjct: 387 NGLFDCHRAKEACFLLEEVVNKGLKLPYRAFDSFLMRLSTVGNLKAIHKLSEHMKK 442


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 142/295 (48%), Gaps = 26/295 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y +LI G CK  +++   +  GEM+++G+EP+  TYN+L++G+CR   L  +        
Sbjct: 529 YNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECK 588

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  I   EK+F E+  + +E +   ++ ++  Y R     
Sbjct: 589 SRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTV 648

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    + M+ KGI PT ATYSS++  +C+ GR+EDA+ L+ EM + G+ P+   Y    
Sbjct: 649 EAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALI 708

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y      +  + + ++M    +  PN  +Y ++I  +     M    ++ +++ G G+
Sbjct: 709 GGYCKLGQMDKVVNVLQEMSSYDIH-PNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGI 767

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
            PD  +Y +L +G C++ K +E  +    M ++GL   ++T+ TL  G  Q   L
Sbjct: 768 VPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHGWQQPSAL 822



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 136/274 (49%), Gaps = 11/274 (4%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +LI+G CK   +  A R L +M+ERG   + +TYN L++G C+          E  +   
Sbjct: 496 ALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCK----------EGKVEEG 545

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            K+  EM  +GIEPD  ++++++H   R  +   +++  N  K + + P V TY  ++  
Sbjct: 546 FKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDG 605

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C   +IE+ E+L  E++   +  ++  YN   + Y    +   A KL+  M+  G+  P
Sbjct: 606 YCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGI-PP 664

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
              +Y+ LI     + RM+  + + ++++  GL P++  YT LI G C+  +  +     
Sbjct: 665 TTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVL 724

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            EM    + P K+T+  +  G  +S  ++T  +L
Sbjct: 725 QEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKL 758



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 133/285 (46%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G CK   +D A RF  +M++ GV   ++TY+VL+NG+ +       E+F +   
Sbjct: 284 YNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKL------EKFNE--- 334

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V  E   +G  P+   ++ ++  Y +      +L     M  KGI P   T +S++
Sbjct: 335 -ANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSII 393

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G++E AE +L EM+  G   +   +               A++  R+M    + 
Sbjct: 394 QGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNM- 452

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN      L+G      +     E+W  +   G G +L +   LIHGLC+    +EA +
Sbjct: 453 RPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVR 512

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              +M+E+G +  K+T+ TL  G  +   +    +L+ ++ ++ I
Sbjct: 513 LLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGI 557



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 139/302 (46%), Gaps = 11/302 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+CK+  +  A R  G+M+ +G+ PN VT N ++ G C+   +          
Sbjct: 353 VYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQM---------- 402

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE + +EM  RG   +  +F+ ++H      + + +L  L  M  + + P     +++
Sbjct: 403 EQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTL 462

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  LC  G+  DA EL   ++  G   +  T N          +   A++L ++M E G 
Sbjct: 463 VGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGF 522

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +  + +YN LI       +++   ++  ++   G+ PD  +Y +LIHG+C   K  EA 
Sbjct: 523 VLDKI-TYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAV 581

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
             + E   + L+P   T+  +  G  ++D +    +L  +L  +++   S   N   + Y
Sbjct: 582 NLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAY 641

Query: 301 RR 302
            R
Sbjct: 642 CR 643



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 131/286 (45%), Gaps = 24/286 (8%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T L+    K N ++ +  ++ E + +GV P+V  ++  +N  C+             + +
Sbjct: 216 TFLLSSLVKANELEKS-YWVFETMRQGVSPDVYLFSTAINAFCKGGK----------VED 264

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK----GICPTVATYS 118
           A ++F +M   G+ P+V +++ ++H   +      +LD+    KEK    G+  T+ TYS
Sbjct: 265 AIQLFFDMEKLGVSPNVVTYNNLIHGLCK----HGNLDEAFRFKEKMVKDGVNATLITYS 320

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++  L    +  +A  +L E +  G  P+   YN     Y    +   A+++   M   
Sbjct: 321 VLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSK 380

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  PN  + N +I  F  + +M+    I  ++   G   +  ++T +IH LC   +++ 
Sbjct: 381 GIN-PNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFES 439

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLKKK 280
           A ++  EM+ + + P      TL  GL +    SD +  W RL +K
Sbjct: 440 ALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEK 485



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 119/262 (45%), Gaps = 15/262 (5%)

Query: 20  RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDV 79
           RFL     +GV P V T   LL      +SL  +   EK+      VF+ MR +G+ PDV
Sbjct: 201 RFLAN---KGVFPTVKTCTFLL------SSLVKANELEKSYW----VFETMR-QGVSPDV 246

Query: 80  TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
             FS  ++ + +  + + ++     M++ G+ P V TY++++  LC  G +++A     +
Sbjct: 247 YLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEK 306

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
           MV++GV  +  TY+         +  N A  + ++  E G   PN   YN LI  +  + 
Sbjct: 307 MVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGF-TPNEVVYNTLIDGYCKMG 365

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
            +     I  D+   G+ P+  +   +I G C+  + ++A     EM+ +G       F 
Sbjct: 366 NLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFT 425

Query: 260 TLYRGLIQSDMLRTWRRLKKKL 281
           T+   L  +    +  R  +++
Sbjct: 426 TIIHWLCMNSRFESALRFLREM 447



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 111/244 (45%), Gaps = 12/244 (4%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS---RAHQPQLSLDKLNFMKEKGICPTVAT 116
           I +A    +E+   G+   V +  +++HVY    R    + ++    F+  KG+ PTV T
Sbjct: 157 IASAMADLNEVGESGVA--VAAVDLLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKT 214

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
            + ++  L     +E +  +  E +R GV P    ++     +        A++L+  M+
Sbjct: 215 CTFLLSSLVKANELEKSYWVF-ETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDME 273

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           + G+  PN+ +YN LI        +D        +   G+   L +Y++LI+GL + +K+
Sbjct: 274 KLGVS-PNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKF 332

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK-----KKLDEESITFGSE 291
            EA     E +EKG  P +V + TL  G  +   L    R++     K ++  S+T  S 
Sbjct: 333 NEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSI 392

Query: 292 FQNY 295
            Q +
Sbjct: 393 IQGF 396



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 10/180 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI  +C+      A +   +M  +G+ P   TY+ L++G+C    +          
Sbjct: 633 VYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRM---------- 682

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A+ + DEMR  G+ P+V  ++ ++  Y +  Q    ++ L  M    I P   TY+ +
Sbjct: 683 EDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVM 742

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +      G ++ A +LL EMV  G+ P   TYN     +          K+   M ++GL
Sbjct: 743 IDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGL 802


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 136/268 (50%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G CKI     A + L  + +R   P+VV Y+ +++G+C+          +K + 
Sbjct: 173 YGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCK----------DKIVN 222

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A   F EM  RGI P+V ++S ++  +  A Q   +   LN M  K I P V TY+ ++
Sbjct: 223 QAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILI 282

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++++A++LL EM   G      TYN         ++ + A  L+ +MK+ G+ 
Sbjct: 283 DALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGI- 341

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN ++Y  LI       R+   ++++  +   G   D+ +Y ++I GLC++  + +A  
Sbjct: 342 QPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALA 401

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              +M + G +P  VTF+ + R L + D
Sbjct: 402 MKSKMEDNGCIPNAVTFDIIIRSLFEKD 429



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 133/277 (48%), Gaps = 11/277 (3%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C + ++  +   LG++++ G +P+ +T N L+ G+C +  +  S  F        
Sbjct: 106 LINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFH------- 158

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
              D++  +G + +  S+  +L+   +  + + ++  L  ++++   P V  YS+++  L
Sbjct: 159 ---DKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGL 215

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C    +  A +   EM   G+ P+  TY+     +       GA  L  +M    +  PN
Sbjct: 216 CKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNIN-PN 274

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           +++YNILI       ++   +++  ++   G   D+ +Y  ++ GLC+ Q   +A   F+
Sbjct: 275 VYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFM 334

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +M + G+ P K T+  L  GL +   L+  ++L + L
Sbjct: 335 KMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHL 371



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 121/252 (48%), Gaps = 11/252 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY+++I G CK   ++ A  F  EM  RG+ PNV+TY+ L+ G C    L          
Sbjct: 207 MYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQL---------- 256

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + +EM ++ I P+V +++I++    +  + + +   L  M  KG    V TY+SV
Sbjct: 257 MGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSV 316

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC    ++ A  L  +M + G+ P+  TY               A KL++ +   G 
Sbjct: 317 LDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGC 376

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C+ ++ +YN++I         D    + + ++ +G  P+  ++ ++I  L EK +  +A 
Sbjct: 377 CI-DVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEKDENDKAE 435

Query: 241 QYFVEMIEKGLL 252
           +    MI KGLL
Sbjct: 436 KLLHGMIAKGLL 447



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 96/212 (45%), Gaps = 5/212 (2%)

Query: 56  FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL-HVYSRAHQP-QLSLDKLNFMKEKGICPT 113
            E  + +    F+ + +    P +  F  +L ++    H P  +SL +   M+ KGI P 
Sbjct: 42  IENVVDDTVSQFNRLLLVRHTPPIIEFGKILGYLVKMKHYPTAISLSRQ--MEVKGIEPN 99

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           + T + ++ C C  G++  +  +LG++++ G  P   T N   K    + +   ++  + 
Sbjct: 100 LVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHD 159

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           ++   G  + N  SY  L+     +       ++   ++     PD+  Y+ +I GLC+ 
Sbjct: 160 KVVAQGFQM-NQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKD 218

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +   +A  +F EM  +G+ P  +T+ TL  G 
Sbjct: 219 KIVNQAYDFFSEMNARGIFPNVITYSTLIWGF 250



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           A+ L RQM+  G+  PN+ + NILI  F  L +M     +   +   G  PD  +   L+
Sbjct: 84  AISLSRQMEVKGI-EPNLVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLM 142

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
            GLC K + K +  +  +++ +G    +V++ TL  GL +    R   +L + +++ S
Sbjct: 143 KGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRS 200


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 149/319 (46%), Gaps = 31/319 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           Y +LI G+CK+NRID A R L  M  +   P+ VTYN+++  +C R  L  + +      
Sbjct: 161 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLL 220

Query: 56  -------------------FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  +  A K+ DEM  RG++PD+ +++ ++    +     
Sbjct: 221 SDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVD 280

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + + +  ++ KG  P V +Y+ +++ L + G+ E+ E+L+ +M      P+  TY+   
Sbjct: 281 RAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILI 340

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      AM L + MKE GL  P+ +SY+ LI  F    R+D+  E    +   G 
Sbjct: 341 TTLCRDGKIEEAMNLLKLMKEKGL-TPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGC 399

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS-DMLRTWR 275
            PD+ +Y  ++  LC+  K  +A + F ++ E G  P   ++ T++  L  S D +R   
Sbjct: 400 LPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALH 459

Query: 276 ----RLKKKLDEESITFGS 290
                +   +D + IT+ S
Sbjct: 460 MILEMMSNGIDPDEITYNS 478



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 130/272 (47%), Gaps = 15/272 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI        +D A + + EM+ RG++P++ TYN ++ G+C+   +   +R  + +R
Sbjct: 231 YTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMV---DRAFEMVR 287

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N E       ++G EPDV S++I+L       + +     +  M  +   P V TYS ++
Sbjct: 288 NLE-------LKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILI 340

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDG 179
             LC  G+IE+A  LL  M   G+ P A +Y+     +   GR D   A++    M  DG
Sbjct: 341 TTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDV--AIEFLETMISDG 398

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C+P++ +YN ++       + D   EI+  +   G  P+  SY  +   L        A
Sbjct: 399 -CLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRA 457

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
               +EM+  G+ P ++T+ ++   L +  M+
Sbjct: 458 LHMILEMMSNGIDPDEITYNSMISCLCREGMV 489



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 133/270 (49%), Gaps = 17/270 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK   +D A   +  +  +G EP+V++YN+LL     RA L+  +  E    
Sbjct: 266 YNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILL-----RALLNQGKWEE---- 316

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             EK+  +M     +P+V ++SI++    R  + + +++ L  MKEKG+ P   +Y  ++
Sbjct: 317 -GEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLI 375

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR++ A E L  M+ +G  P    YN           A+ A++++ ++ E G C
Sbjct: 376 AAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG-C 434

Query: 182 VPNMHSYNILIGMFMAL-NRMDMVREIWN--DVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
            PN  SYN    MF AL +  D +R +    ++  +G+ PD  +Y  +I  LC +    E
Sbjct: 435 SPNSSSYNT---MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDE 491

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           A +  V+M      P  VT+  +  G  ++
Sbjct: 492 AFELLVDMRSCEFHPSVVTYNIVLLGFCKA 521



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 127/259 (49%), Gaps = 12/259 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T LI G+  +  I  A R + E++E+  +P+V  YN L+NG C+             I +
Sbjct: 128 TKLIKGFFTLRNIPKAVRVM-EILEKFGQPDVFAYNALINGFCKM----------NRIDD 176

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A +V D MR +   PD  +++I++       +  L+L  LN +      PTV TY+ +++
Sbjct: 177 ATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIE 236

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
                G +++A +L+ EM+  G+ P   TYN   +        + A ++ R ++  G C 
Sbjct: 237 ATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKG-CE 295

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ SYNIL+   +   + +   ++   +      P++ +Y++LI  LC   K +EA   
Sbjct: 296 PDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNL 355

Query: 243 FVEMIEKGLLPQKVTFETL 261
              M EKGL P   +++ L
Sbjct: 356 LKLMKEKGLTPDAYSYDPL 374



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 129/296 (43%), Gaps = 45/296 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+       + +  E+ + +M     +PNVVTY++L+  +CR          +  I 
Sbjct: 301 YNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCR----------DGKIE 350

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M+ +G+ PD  S+  ++  + R  +  ++++ L  M   G  P +  Y++V+
Sbjct: 351 EAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVL 410

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
             LC  G+ + A E+ G++   G  P++ +YN  F       D   A+ +  +M  +G+ 
Sbjct: 411 ATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGID 470

Query: 181 -----------CV----------------------PNMHSYNILIGMFMALNRMDMVREI 207
                      C+                      P++ +YNI++  F   +R++    +
Sbjct: 471 PDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINV 530

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
              + G+G  P+  +YT+LI G+       EA +   +++    + +  +F+ L+R
Sbjct: 531 LESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISE-YSFKRLHR 585



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 2/187 (1%)

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           + H   R+     SL  L  M  KG  P V   + ++K   +   I  A  ++ E++   
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVM-EILEKF 153

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
             P    YN     +      + A ++  +M+      P+  +YNI+IG   +  ++D+ 
Sbjct: 154 GQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFS-PDTVTYNIMIGSLCSRGKLDLA 212

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            ++ N +      P + +YT+LI     +    EA +   EM+ +GL P   T+ T+ RG
Sbjct: 213 LKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRG 272

Query: 265 LIQSDML 271
           + +  M+
Sbjct: 273 MCKEGMV 279



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 14/142 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+++L   W   ++I      L EM+  G++P+ +TYN +++ +CR          E  +
Sbjct: 444 MFSAL---WSSGDKIRALHMIL-EMMSNGIDPDEITYNSMISCLCR----------EGMV 489

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++  +MR     P V +++IVL  + +AH+ + +++ L  M   G  P   TY+ +
Sbjct: 490 DEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVL 549

Query: 121 VKCLCSCGRIEDAEELLGEMVR 142
           ++ +   G   +A EL  ++VR
Sbjct: 550 IEGIGFAGYRAEAMELANDLVR 571


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 143/282 (50%), Gaps = 11/282 (3%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI G+CK  RID A  F+ E +  G  P+  TYN L+NG+C+              ++A 
Sbjct: 279 LINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGH----------AKHAM 328

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           +V D M + G++PD+ +++ ++    +  + + ++  L+ M  +   P   TY++++  L
Sbjct: 329 EVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSL 388

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C   R+++A E+   +   G+ P   T+N   +      +   AM L+ +MK  G C P+
Sbjct: 389 CKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKG-CRPD 447

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
             +YN+LI    +  +++    +  +++ +G   ++  Y  LI G C+ ++ +EA + F 
Sbjct: 448 EFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFD 507

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           EM  +G+    VT+ TL  GL +S  +    +L  ++  E +
Sbjct: 508 EMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGL 549



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 140/324 (43%), Gaps = 61/324 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI- 60
           Y SLI G CK+  I+ A + L +M+ R   PN VTYN +++ +C+   +  +    + + 
Sbjct: 346 YNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLT 405

Query: 61  ------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                   ++A  +F+EM+ +G  PD  ++++++     + + +
Sbjct: 406 SKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLE 465

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+ L  M+  G    V  Y++++   C   RIE+AEE+  EM   GV   + TYN   
Sbjct: 466 EALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLI 525

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                 K    A +L  QM  +GL  P+  +YN L+  F     +    +I   +  SG 
Sbjct: 526 DGLCKSKRVEDAAQLMDQMIMEGL-RPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGC 584

Query: 217 GPDLDSYTMLIHGLC-----------------------------------EKQKWKEACQ 241
            PD+ +Y  LI GLC                                   ++ +  EA +
Sbjct: 585 NPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMR 644

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F EM++K   P  +T++ +YRGL
Sbjct: 645 LFREMLDKSEPPDAITYKIVYRGL 668



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 131/265 (49%), Gaps = 13/265 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+++ G+ +   +D A R   +M+E G     VT NVL+NG C++  +  +  F     
Sbjct: 241 FTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSF----- 295

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                  E    G  PD  +++ +++   +    + +++ ++ M   G+ P + TY+S++
Sbjct: 296 -----IQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLI 350

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G IE+A ++L +MV     P+A TYN            + A ++ R +   G+ 
Sbjct: 351 SGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGI- 409

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           +P++ ++N LI G+ ++ N    + +++ ++KG G  PD  +Y MLI  LC  +K +EA 
Sbjct: 410 LPDVCTFNSLIQGLCLSSNHKSAM-DLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEAL 468

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
               EM   G     V + TL  G 
Sbjct: 469 NLLKEMELNGCARNVVIYNTLIDGF 493



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 132/294 (44%), Gaps = 53/294 (18%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+CK  RI+ AE    EM  +GV  + VTYN L++G+C+           K +
Sbjct: 485 IYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCK----------SKRV 534

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A ++ D+M + G+ PD  +++ +L  + +    + + D +  M   G  P + TY+++
Sbjct: 535 EDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATL 594

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  GR++ A  LL  +   G+  +   YN   +    R   + AM+L+R+M     
Sbjct: 595 ISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREM----- 649

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE-KQKWKEA 239
                            L++ +               PD  +Y ++  GLC       EA
Sbjct: 650 -----------------LDKSE--------------PPDAITYKIVYRGLCNGGGPIGEA 678

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL------KKKLDEESIT 287
             + VEMIE+G +P+  +F  L  GL    M  T  +L      K K  E  I+
Sbjct: 679 VDFTVEMIERGNIPEFSSFVMLAEGLCTLSMDDTLVKLVDMIMEKAKFSEREIS 732



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 128/316 (40%), Gaps = 46/316 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+      N++ + E     M+ R +  +V T+N+L+  +C+   + P         
Sbjct: 171 YNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRP--------- 221

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL---------------------- 99
            A  + +EM   G+ PD T+F+ ++  Y        +L                      
Sbjct: 222 -AILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLI 280

Query: 100 ----------DKLNFMKE---KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                       L+F++E   +G  P   TY+++V  LC  G  + A E++  M+  G+ 
Sbjct: 281 NGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLD 340

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P   TYN          +   A+K+  QM     C PN  +YN +I      NR+D   E
Sbjct: 341 PDIYTYNSLISGLCKLGEIEEAVKILDQMVSRD-CSPNAVTYNAIISSLCKENRVDEATE 399

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           I   +   G+ PD+ ++  LI GLC     K A   F EM  KG  P + T+  L   L 
Sbjct: 400 IARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLC 459

Query: 267 QSDMLRTWRRLKKKLD 282
            S  L     L K+++
Sbjct: 460 SSRKLEEALNLLKEME 475



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 120/270 (44%), Gaps = 18/270 (6%)

Query: 30  VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89
           ++P+   YNVLLN +     L          +  E     M  R I  DV++F+I++   
Sbjct: 164 IKPDTRFYNVLLNVLVDANKL----------KLVESAHSSMVRRRIRHDVSTFNILIKAL 213

Query: 90  SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
            +AHQ + ++  +  M   G+ P   T++++++     G ++ A  +  +MV  G CP  
Sbjct: 214 CKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYG-CPCT 272

Query: 150 E-TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
           + T N     +  +   + A+   ++   +G   P+  +YN L+     +       E+ 
Sbjct: 273 DVTVNVLINGFCKQGRIDQALSFIQEAVSEGF-RPDQFTYNTLVNGLCKIGHAKHAMEVV 331

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           + +   GL PD+ +Y  LI GLC+  + +EA +   +M+ +   P  VT+  +   L + 
Sbjct: 332 DAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKE 391

Query: 269 DMLRTWRRLKKKLDEESI-----TFGSEFQ 293
           + +     + + L  + I     TF S  Q
Sbjct: 392 NRVDEATEIARLLTSKGILPDVCTFNSLIQ 421



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 95/213 (44%), Gaps = 2/213 (0%)

Query: 72  VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFM-KEKGICPTVATYSSVVKCLCSCGRI 130
           V  + PD T   ++     R      +L   N+  K+    P+ + Y  +++ L   G  
Sbjct: 55  VHHLPPDFTPKQLI-ETLRRQTDEVAALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSF 113

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           E    +L EM  +G       +  F + Y   +  +  + + + M+++    P+   YN+
Sbjct: 114 EYMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNV 173

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           L+ + +  N++ +V    + +    +  D+ ++ +LI  LC+  + + A     EM   G
Sbjct: 174 LLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYG 233

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           L P + TF T+ +G I+   L    R+K+++ E
Sbjct: 234 LSPDETTFTTIMQGYIEGGNLDGALRIKEQMVE 266


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 144/313 (46%), Gaps = 31/313 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEK-- 58
           YT+LI G+CK   +      LGE+  RG  P++VTY+ +++G+C+   L  + + FE+  
Sbjct: 182 YTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS 241

Query: 59  -------------------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
                               +  A ++  +M      PDV +++ ++  + +  +   + 
Sbjct: 242 CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAY 301

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           +    M    + P V T++S+V  LC  GR+EDA ELL E+ R G  P+  TYNC    Y
Sbjct: 302 ELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGY 361

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP- 218
                   A +L    +  G  VPN  +YNIL+       R D   +  + +   G GP 
Sbjct: 362 CKANQVRKAEELVADFRSRGF-VPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEG-GPC 419

Query: 219 --DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
              +  Y +++  LC   +  +A Q++ EMI++G +P   TF T+   L ++   +    
Sbjct: 420 PTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHE 479

Query: 277 LKKKLDEESITFG 289
           L     EE I +G
Sbjct: 480 LL----EEMIKYG 488



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 132/283 (46%), Gaps = 15/283 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G+C+   +D A R LG+M++    P+VVTY  L++  C+   L           
Sbjct: 249 YNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLD---------- 298

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F +M    + PDV +F+ ++       + + +L+ L  +  +G  PT+ TY+ VV
Sbjct: 299 DAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVV 358

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE--YRGRKDANGAMKLYRQM-KED 178
              C   ++  AEEL+ +    G  P+  TYN         GR D   A++   Q+  E 
Sbjct: 359 DGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQ--ALQYLDQLNSEG 416

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G C  ++  Y I++       R D   + + ++   G  P   ++  ++  LC+  + ++
Sbjct: 417 GPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQ 476

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           A +   EMI+ G  P   T + +     ++ M++    L  +L
Sbjct: 477 AHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASEL 519



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 123/266 (46%), Gaps = 14/266 (5%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
           P  + +NV++ G+CR   L          R+A  V+ +M      PD  +++ ++H  S+
Sbjct: 3   PGTLLHNVVIGGLCRAGRL----------RHALGVYRQMN-DAHPPDFLTYTKLVHGLSK 51

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
           A + + ++  L  M      P   T + VV+ LC   R++DA EL+ EM+  G+  +A T
Sbjct: 52  ARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAIT 111

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           Y+         +  + A+ L   M E G C P + +YN +I  F    R+D        +
Sbjct: 112 YSALVDGLCKCERLDEAVALVETMAERG-CAPTVVTYNSIITGFCRARRVDEAHGFMEQM 170

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              G  PD+ +YT LI G C+ +      +   E+  +G  P  VT+ T+  GL ++  L
Sbjct: 171 VAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRL 230

Query: 272 RTWRRLKKKLD--EESITFGSEFQNY 295
           R    + +++     +IT+ S    Y
Sbjct: 231 RDAVDIFEEMSCAPTAITYNSLIGGY 256



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 123/295 (41%), Gaps = 41/295 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L++G  K  R+  A + L EM+     P+  T  V++  +C              + 
Sbjct: 42  YTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLC----------LGDRVD 91

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++ +EM  RG+  +  ++S ++    +  +   ++  +  M E+G  PTV TY+S++
Sbjct: 92  DARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSII 151

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
              C   R+++A   + +MV  G  P   TY      +   +D    ++L  ++      
Sbjct: 152 TGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFT 211

Query: 178 ----------DGL-----------------CVPNMHSYNILIGMFMALNRMDMVREIWND 210
                     DGL                 C P   +YN LIG +     MD    +   
Sbjct: 212 PDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGK 271

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +      PD+ +YT L+   C+  +  +A + F +M+   L P  VTF +L  GL
Sbjct: 272 MVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGL 326


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 129/253 (50%), Gaps = 11/253 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI+G+C   ++D A +    M+ + + P++VTYN L++G+CR+  L           
Sbjct: 404 FTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLD---------- 453

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++D+M  R I P+  ++SI++  +    Q + +   L+ M  KGI P + TY+S++
Sbjct: 454 KANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSII 513

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C  G +   ++ L +M+ N V P   TYN     Y      + A KL   M+++ + 
Sbjct: 514 KGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKV- 572

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN+LI  F     +     I+  +   G+ PD  +Y  +I+G       KEA Q
Sbjct: 573 QPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQ 632

Query: 242 YFVEMIEKGLLPQ 254
              EM+++G  P 
Sbjct: 633 LHDEMLQRGFAPD 645



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 146/303 (48%), Gaps = 46/303 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT +I G+C+   +  A R   EM+  G  P+VVTYN LLNG+C+          E+ +
Sbjct: 333 IYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK----------ERRL 382

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVY------SRAHQ-------------------- 94
            +AE + +EMR RG+ PD+ +F+ ++H Y       +A Q                    
Sbjct: 383 LDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTL 442

Query: 95  -----PQLSLDKLNF----MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
                 Q  LDK N     M  + I P   TYS ++   C  G++EDA   L EM+  G+
Sbjct: 443 IDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGI 502

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P+  TYN   K Y    + +   K  ++M  + +  P++ +YN LI  ++  ++M    
Sbjct: 503 LPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVS-PDLITYNTLIHGYIKEDKMHDAF 561

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           ++ N ++   + PD+ +Y MLI+G       +EA   F +M  KG+ P + T+ ++  G 
Sbjct: 562 KLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGH 621

Query: 266 IQS 268
           + +
Sbjct: 622 VTA 624



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 148/299 (49%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI G+C++  I+ A +   EM  RG++P++V+++ L+    RR  +           
Sbjct: 264 FTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMD---------- 313

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A     EMR  G+ PD   +++V+  + RA     +L   + M   G  P V TY++++
Sbjct: 314 HAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLL 373

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R+ DAE LL EM   GV P   T+      Y      + A++L+  M    L 
Sbjct: 374 NGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRL- 432

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN LI        +D   ++W+D+    + P+  +Y++LI   CEK + ++A  
Sbjct: 433 RPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFG 492

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL-----DEESITFGSEFQNY 295
           +  EMI KG+LP  +T+ ++ +G  +S  +   ++  +K+       + IT+ +    Y
Sbjct: 493 FLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGY 551



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 119/264 (45%), Gaps = 46/264 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S++ G C+    D A     EM + GV P+V ++ +L+ G CR             I 
Sbjct: 229 YNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGE----------IE 278

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K++ EMR RGI+PD+ SFS ++ +++R  +   ++  L  M+  G+ P    Y+ V+
Sbjct: 279 EALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVI 338

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + DA  +  EMV  G  P   TYN            NG  K  R +  +GL 
Sbjct: 339 GGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLL---------NGLCKERRLLDAEGL- 388

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
                                      N+++  G+ PDL ++T LIHG C + K  +A Q
Sbjct: 389 --------------------------LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQ 422

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F  M+ + L P  VT+ TL  G+
Sbjct: 423 LFDTMLNQRLRPDIVTYNTLIDGM 446



 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 129/260 (49%), Gaps = 11/260 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +++ +CK    D  +  + EM +R V P+VVT+NV+++   R                A 
Sbjct: 162 MVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEA----------AM 211

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            + D M  +G++P + +++ VL    R+     + +    M + G+ P V +++ ++   
Sbjct: 212 ALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGF 271

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G IE+A ++  EM   G+ P   +++C    +  R   + AM   R+M+  GL VP+
Sbjct: 272 CRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGL-VPD 330

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
              Y ++IG F     M     + +++ G G  PD+ +Y  L++GLC++++  +A     
Sbjct: 331 GVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLN 390

Query: 245 EMIEKGLLPQKVTFETLYRG 264
           EM E+G+ P   TF TL  G
Sbjct: 391 EMRERGVPPDLCTFTTLIHG 410



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 130/270 (48%), Gaps = 16/270 (5%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           E N  T N++++  C+      +  F+K     + V  EM  R + PDV + ++++    
Sbjct: 153 EVNTYTLNIMVHNYCK------ALEFDKV----DAVISEMEKRCVFPDVVTHNVMVDARF 202

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
           RA   + ++  ++ M  KG+ P + TY+SV+K LC  G  + A E+  EM   GV P   
Sbjct: 203 RAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVR 262

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           ++      +    +   A+K+Y++M+  G+  P++ S++ LIG+F    +MD       +
Sbjct: 263 SFTILIGGFCRVGEIEEALKIYKEMRHRGI-KPDLVSFSCLIGLFARRGKMDHAMAYLRE 321

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           ++  GL PD   YTM+I G C      +A +   EM+  G LP  VT+ TL  GL +   
Sbjct: 322 MRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERR 381

Query: 271 LRTWRRLKKKLDEESI-----TFGSEFQNY 295
           L     L  ++ E  +     TF +    Y
Sbjct: 382 LLDAEGLLNEMRERGVPPDLCTFTTLIHGY 411



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 1/171 (0%)

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
           RA  P L+ D    +          T + +V   C     +  + ++ EM +  V P   
Sbjct: 133 RAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVV 192

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           T+N          DA  AM L   M   GL  P + +YN ++         D   E++ +
Sbjct: 193 THNVMVDARFRAGDAEAAMALVDSMVSKGL-KPGIVTYNSVLKGLCRSGMWDKAWEVFKE 251

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   G+ PD+ S+T+LI G C   + +EA + + EM  +G+ P  V+F  L
Sbjct: 252 MDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCL 302


>gi|334187687|ref|NP_197005.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635761|sp|Q9LFQ4.2|PP383_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15010, mitochondrial; Flags: Precursor
 gi|332004721|gb|AED92104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 572

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 144/275 (52%), Gaps = 26/275 (9%)

Query: 2   YTSLIYGWCK-INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +  ++ GWC  I     AER   EM   GV+ +VV+Y+ +++   +  SL+         
Sbjct: 269 FNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLN--------- 319

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE-KGICPTVATYSS 119
               K+FD M+   IEPD   ++ V+H  ++A     + + +  M+E KGI P V TY+S
Sbjct: 320 -KVLKLFDRMKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNS 378

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++K LC   + E+A+++  EM+  G+ P+  TY+ F +  R  ++     +L  +M++ G
Sbjct: 379 LIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMRILRTGEEV---FELLAKMRKMG 435

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C P + +Y +LI         D V  +W+++K   +GPDL SY ++IHGL    K +EA
Sbjct: 436 -CEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEA 494

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTW 274
             Y+ EM +KG+ P +             DM+++W
Sbjct: 495 YGYYKEMKDKGMRPNENV----------EDMIQSW 519



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 23/188 (12%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIE-RGVEPNVVTYNVLLNGVCR------------- 46
           +Y ++++   K + +  A   +  M E +G+EPNVVTYN L+  +C+             
Sbjct: 339 VYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDE 398

Query: 47  --RASLHPSER----FEKTIRNAEKVFD---EMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
                L P+ R    F + +R  E+VF+   +MR  G EP V ++ +++    R      
Sbjct: 399 MLEKGLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDN 458

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
            L   + MKEK + P +++Y  ++  L   G+IE+A     EM   G+ P+    +    
Sbjct: 459 VLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRPNENVEDMIQS 518

Query: 158 EYRGRKDA 165
            + G++ A
Sbjct: 519 WFSGKQYA 526


>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
 gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
 gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 147/304 (48%), Gaps = 22/304 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR----RASLHPSERFE 57
           Y  L+   CK N++D A++ L EM  +G  P+ V+Y  +++ +C     +     +ERFE
Sbjct: 184 YNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFE 243

Query: 58  KTI----------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK 101
             +                + A ++  EM  +GI P+V S+S +++V   + Q +L+   
Sbjct: 244 PVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSF 303

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN-GVCPSAETYNCFFKEYR 160
           L  M ++G  P + T SS+VK     G   DA +L  +M+R  G+ P+   YN   + + 
Sbjct: 304 LTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFC 363

Query: 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
              +   A+ ++  M+E G C PN+ +Y  LI  F     +D    IWN +  SG  P++
Sbjct: 364 SHGNIVKAVSVFSHMEEIG-CSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNV 422

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK 280
             YT ++  LC   K+KEA      M ++   P   TF    +GL  +  L    ++ ++
Sbjct: 423 VVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQ 482

Query: 281 LDEE 284
           ++++
Sbjct: 483 MEQQ 486



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 128/286 (44%), Gaps = 26/286 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRAS------------ 49
           Y++LI   C   +I++A  FL +M++RG  PN+ T + L+ G   R +            
Sbjct: 284 YSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMI 343

Query: 50  ----LHPSERFEKT----------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
               L P+     T          I  A  VF  M   G  P++ ++  +++ +++    
Sbjct: 344 RGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSL 403

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             ++   N M   G CP V  Y+++V+ LC   + ++AE L+  M +    PS  T+N F
Sbjct: 404 DGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAF 463

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            K        + A K++RQM++   C PN+ +YN L+      NR++    +  ++   G
Sbjct: 464 IKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRG 523

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +     +Y  L+HG C       A Q   +M+  G  P ++T   +
Sbjct: 524 VEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMI 569



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 127/297 (42%), Gaps = 44/297 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ S+I  + ++   + A      + E G +P+V  YN +L+ +            E  I
Sbjct: 113 LFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLG----------ENRI 162

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           +    V+ +M+  G EP+V +++++L    + ++   +   L  M  KG CP   +Y++V
Sbjct: 163 QMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTV 222

Query: 121 VKCLCSCGRIED------------------------------AEELLGEMVRNGVCPSAE 150
           +  +C  G +++                              A EL+ EMV  G+ P+  
Sbjct: 223 ISSMCEVGLVKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVI 282

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWN 209
           +Y+              A     QM + G C PN+++ + L+ G F+     D + ++WN
Sbjct: 283 SYSTLINVLCNSGQIELAFSFLTQMLKRG-CHPNIYTLSSLVKGCFLRGTTFDAL-DLWN 340

Query: 210 D-VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
             ++G GL P++ +Y  L+ G C      +A   F  M E G  P   T+ +L  G 
Sbjct: 341 QMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGF 397



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 125/310 (40%), Gaps = 49/310 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G+C    I  A      M E G  PN+ TY  L+NG  +R SL           
Sbjct: 355 YNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLD---------- 404

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++++M   G  P+V  ++ ++    R  + + +   +  M ++   P+V T+++ +
Sbjct: 405 GAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFI 464

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCP---------------------------------- 147
           K LC  GR++ AE++  +M +   CP                                  
Sbjct: 465 KGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGV 524

Query: 148 --SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
             S+ TYN              A++L  +M  DG   P+  + N++I  +    + +   
Sbjct: 525 EWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKS-PDEITMNMIILAYCKQGKAERAA 583

Query: 206 EIWNDVKGS--GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
           ++ + V        PD+ SYT +I GLC     ++       MI  G++P   T+  L  
Sbjct: 584 QMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLIN 643

Query: 264 GLIQSDMLRT 273
             I  D++R 
Sbjct: 644 CFILDDIVRA 653



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 15/230 (6%)

Query: 51  HPSERFEKTIR---------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK 101
           H    FE  IR         + + +  +M+++G       F  V+ VY +    + +++ 
Sbjct: 74  HTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEM 133

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
              +KE G  P+V  Y+ V+  L    RI+    +  +M R+G  P+  TYN   K    
Sbjct: 134 FYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCK 193

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
               +GA KL  +M   G C P+  SY  +I     +  +   RE+          P + 
Sbjct: 194 NNKVDGAKKLLVEMSNKG-CCPDAVSYTTVISSMCEVGLVKEGREL-----AERFEPVVS 247

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
            Y  LI+GLC++  +K A +   EM+EKG+ P  +++ TL   L  S  +
Sbjct: 248 VYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQI 297



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 88/170 (51%), Gaps = 1/170 (0%)

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
           T  T+  +++ L   G+++  + LL +M   G   S + +      YR    A  A++++
Sbjct: 75  TPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMF 134

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
            ++KE G C P++  YN ++   +  NR+ M+  ++ D+K  G  P++ +Y +L+  LC+
Sbjct: 135 YRIKEFG-CDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCK 193

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
             K   A +  VEM  KG  P  V++ T+   + +  +++  R L ++ +
Sbjct: 194 NNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFE 243



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 10/219 (4%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A ++F  ++  G +P V  ++ VL      ++ Q+       MK  G  P V TY+ ++K
Sbjct: 130 AVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLK 189

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC   +++ A++LL EM   G CP A +Y              G +K  R++ E     
Sbjct: 190 ALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSM----CEVGLVKEGRELAER--FE 243

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P +  YN LI      +      E+  ++   G+ P++ SY+ LI+ LC   + + A  +
Sbjct: 244 PVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSF 303

Query: 243 FVEMIEKGLLPQKVTFETLYRGLI----QSDMLRTWRRL 277
             +M+++G  P   T  +L +G        D L  W ++
Sbjct: 304 LTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQM 342


>gi|413945076|gb|AFW77725.1| ATP binding protein isoform 1 [Zea mays]
 gi|413945077|gb|AFW77726.1| ATP binding protein isoform 2 [Zea mays]
 gi|413945078|gb|AFW77727.1| ATP binding protein isoform 3 [Zea mays]
          Length = 634

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 141/258 (54%), Gaps = 12/258 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+  WC    +  A R   EM+E+G++P+VV +N ++ G+ R       +R  + + 
Sbjct: 334 YTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLR------GQRRPEAV- 386

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K+F+ M+ +G  P+V ++++++  + +  +  ++++    M+E    P VATY+ ++
Sbjct: 387 ---KMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLL 443

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               +  +++    +L EM + G  P A TYN   K    R   + A ++Y++M + GL 
Sbjct: 444 VGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGL- 502

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            P +H+YN+++   F+  +   M   +W ++   G+ PD++SYT+ I+G     + +EA 
Sbjct: 503 EPTIHTYNMMMKSYFVGDSNYAMGCAVWEEMHQRGICPDVNSYTVFINGHIRHGRPEEAY 562

Query: 241 QYFVEMIEKGLLPQKVTF 258
           +Y  EMI KG+   ++ +
Sbjct: 563 KYIEEMINKGMKAPQIDY 580



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 114/245 (46%), Gaps = 12/245 (4%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M + G +  V ++N LL  + +          E   R A +VFD+M  +   PD+ S++ 
Sbjct: 288 MRKNGFDDGVESFNCLLVALAK----------EGLGREARQVFDKMHGQ-YSPDLRSYTA 336

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           ++  +  A     +    N M EKG+ P V  ++++++ L    R  +A ++   M   G
Sbjct: 337 LMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKG 396

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
             P+  TY    +++  +   + AM+ + +M+E   C P++ +Y  L+  +    +MD V
Sbjct: 397 PPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQE-AKCQPDVATYTCLLVGYGNAKQMDRV 455

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             +  ++   G  PD  +Y  LI  L  +    +A + + +MI+KGL P   T+  + + 
Sbjct: 456 TAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKS 515

Query: 265 LIQSD 269
               D
Sbjct: 516 YFVGD 520



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 113/245 (46%), Gaps = 10/245 (4%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR---AHQPQLSLDKLNFMKEKGICPTVAT 116
           I+NA  VF+ MR  G +  V SF+ +L   ++     + +   DK++        P + +
Sbjct: 278 IKNAVGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQVFDKMHGQ----YSPDLRS 333

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQM 175
           Y++++   C+   + +A  +  EM+  G+ P    +N   +   RG++    A+K++  M
Sbjct: 334 YTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRPE-AVKMFELM 392

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           K  G   PN+ +Y +LI       +MDM  E + +++ +   PD+ +YT L+ G    ++
Sbjct: 393 KAKGP-PPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQ 451

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
                    EM +KG  P   T+  L + L   +M     R+ KK+ ++ +       N 
Sbjct: 452 MDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNM 511

Query: 296 HFKPY 300
             K Y
Sbjct: 512 MMKSY 516



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 108/248 (43%), Gaps = 13/248 (5%)

Query: 22  LGEMIERGVEPNV-VTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80
           + +++  G + N+    + L   +C    L    RF+   R + + F    V G     T
Sbjct: 169 IADVVASGADANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATVSGGFTHTT 228

Query: 81  -SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
            ++  +LH+  +  Q +  +  +  M + G   ++  +   +K   + G I++A  +   
Sbjct: 229 ITYCKMLHILGKTRQFESMVAMIQEMGKAGAL-SMDAFKVAIKSFAAAGEIKNAVGVFEL 287

Query: 140 MVRNGVCPSAETYNCFF----KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           M +NG     E++NC      KE  GR+    A +++ +M   G   P++ SY  L+  +
Sbjct: 288 MRKNGFDDGVESFNCLLVALAKEGLGRE----ARQVFDKMH--GQYSPDLRSYTALMLAW 341

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
                +     +WN++   G+ PD+  +  +I GL   Q+  EA + F  M  KG  P  
Sbjct: 342 CNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNV 401

Query: 256 VTFETLYR 263
            T+  L R
Sbjct: 402 WTYTMLIR 409



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 82/179 (45%), Gaps = 11/179 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ G+    ++D     L EM ++G  P+  TYN L+  +  R              
Sbjct: 439 YTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNR----------NMPD 488

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP-QLSLDKLNFMKEKGICPTVATYSSV 120
           +A +++ +M  +G+EP + ++++++  Y        +       M ++GICP V +Y+  
Sbjct: 489 DAARIYKKMIKKGLEPTIHTYNMMMKSYFVGDSNYAMGCAVWEEMHQRGICPDVNSYTVF 548

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +      GR E+A + + EM+  G+      YN F  ++      +   +L +++K  G
Sbjct: 549 INGHIRHGRPEEAYKYIEEMINKGMKAPQIDYNKFAADFSKAGKPDILFELAQKVKFAG 607


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 149/299 (49%), Gaps = 46/299 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMI----------------------------------- 26
           Y +L+YG+C++  ++MA R   +MI                                   
Sbjct: 271 YRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLG 330

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
           + G+ PNV  YN L++ +C+      +ERF+    +A+++F EM  RG+EP+  +++I++
Sbjct: 331 DLGMVPNVFAYNALIDKLCK------NERFD----DADRLFKEMAGRGLEPNEVTYAILI 380

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
           H   +    + +L   + M++KGI  TV  Y+S++   C  G ++ A  LL  MV+ G+ 
Sbjct: 381 HALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLT 440

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+A +Y+          D +  M+L+R+M E G+   N +++  LI  F    +MD    
Sbjct: 441 PTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNN-YTFTALINGFCKDKKMDEAAR 499

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +++ +  S + P+  ++ ++I G C     ++A Q + +M+E GL P   T+ +L  GL
Sbjct: 500 LFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGL 558



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 136/322 (42%), Gaps = 62/322 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +I G+C +  I  A +   +M+E G++P+  TY  L++G+C  + +  +  F   + 
Sbjct: 516 FNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLE 575

Query: 62  NAEKV-------------------------FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           N+  V                         +DEM VRG++ D+ SF+I+++   + H  +
Sbjct: 576 NSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKE 635

Query: 97  LSLDKLNFMKEKGI-----------------------------------CPTVATYSSVV 121
            S      MKE+G+                                    P   T++ ++
Sbjct: 636 KSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLI 695

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +  AE L  EM+   V P+  TYNCF   +    D   A  L+  M +  L 
Sbjct: 696 NNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLA 755

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++ S+NILI       ++    ++ + +  SG  PD  SY+ +IH LC+     +A +
Sbjct: 756 --SIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFE 813

Query: 242 YFVEMIEKGLLPQKVTFETLYR 263
            + EM+ KGL P  V +    R
Sbjct: 814 LWNEMLYKGLKPDVVAYNIFIR 835



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 129/249 (51%), Gaps = 19/249 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI   CK  R D A+R   EM  RG+EPN VTY +L++ +C+R            I 
Sbjct: 341 YNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRG----------MIE 390

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK----LNFMKEKGICPTVATY 117
           +A  +FD+MR +GI+  V  ++ +++ Y +    Q SLD+    L+ M ++G+ PT A+Y
Sbjct: 391 DALCLFDKMRDKGIKVTVYPYNSLINGYCK----QGSLDRARGLLSGMVKEGLTPTAASY 446

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           S ++  LC  G +    EL  EM   G+  +  T+      +   K  + A +L+ +M +
Sbjct: 447 SPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMID 506

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
             + +PN  ++N++I  +  +  +    ++++ +   GL PD  +Y  LI GLC      
Sbjct: 507 SNV-IPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVS 565

Query: 238 EACQYFVEM 246
           +A ++  ++
Sbjct: 566 KANEFVADL 574



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 122/285 (42%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+YG CK  R+  A      M+  GV  + VTY  L+ G CR       E  E  +R
Sbjct: 236 YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRM------EELEMALR 289

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +  +M   G  P   + S ++    +    + +      + + G+ P V  Y++++
Sbjct: 290 ----ITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALI 345

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R +DA+ L  EM   G+ P+  TY         R     A+ L+ +M++ G+ 
Sbjct: 346 DKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIK 405

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V  ++ YN LI  +     +D  R + + +   GL P   SY+ LI GLC         +
Sbjct: 406 V-TVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCME 464

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM E+G+     TF  L  G  +   +    RL  K+ + ++
Sbjct: 465 LHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNV 509



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 125/285 (43%), Gaps = 11/285 (3%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           + +++   KI +  +A     +M++ GV  +   Y   +   C            + +  
Sbjct: 167 SQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCE----------SRNLDG 216

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  +   M   G++     ++++++   +  + Q +++  N M   G+     TY ++V 
Sbjct: 217 ARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVY 276

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C    +E A  +  +M+R G  PS    +    E R ++    A  L  ++ + G+ V
Sbjct: 277 GFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM-V 335

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN+ +YN LI       R D    ++ ++ G GL P+  +Y +LIH LC++   ++A   
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           F +M +KG+      + +L  G  +   L   R L   + +E +T
Sbjct: 396 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLT 440



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 140/312 (44%), Gaps = 40/312 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHP--------S 53
           Y SLI G+CK   +D A   L  M++ G+ P   +Y+ L+ G+CR   L          +
Sbjct: 411 YNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMA 470

Query: 54  ERF-----------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           ER                  +K +  A ++FD+M    + P+  +F++++  Y      +
Sbjct: 471 ERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIR 530

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM-----VRNGVCPSAET 151
            +    + M E G+ P   TY S++  LC    +  A E + ++     V N    +A  
Sbjct: 531 KAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALL 590

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE--IWN 209
           Y  FF+E R  +       L+ +M   G+ + ++ S+ I++  + AL + D  +   ++ 
Sbjct: 591 YG-FFREGRFTE----TYHLWDEMAVRGVKL-DLVSFTIIV--YAALKQHDKEKSCVLFR 642

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           ++K  G+ PD   YT +I  L +++   +A   + +M+  G  P  VT   L   L +S 
Sbjct: 643 EMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSG 702

Query: 270 MLRTWRRLKKKL 281
            L +   L K++
Sbjct: 703 YLGSAELLCKEM 714



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 12/191 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI   CK   +  AE    EM+   V PN  TYN  L+       +  ++     + 
Sbjct: 691 HTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAM- 749

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                     ++G    + SF+I++    +A + Q ++D ++ + E G  P   +YS+++
Sbjct: 750 ----------LQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTII 799

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G I  A EL  EM+  G+ P    YN F +      +++ A+ +Y  M   G+ 
Sbjct: 800 HELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGV- 858

Query: 182 VPNMHSYNILI 192
            PN  +Y  L+
Sbjct: 859 QPNWDTYRALL 869



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 18/201 (8%)

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
           L      GI     T S ++  L    +   A +L  +M+++GV      Y    + Y  
Sbjct: 151 LGLSLSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCE 210

Query: 162 RKDANGAMKLYRQMKEDGL---CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218
            ++ +GA  L  +M+ +G+    VP    YN+L+       R+    E+ N +   G+  
Sbjct: 211 SRNLDGARGLVVRMESEGVKASAVP----YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTA 266

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
           D  +Y  L++G C  ++ + A +   +MI  G +P +     +       D LR     K
Sbjct: 267 DEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMI------DELR-----K 315

Query: 279 KKLDEESITFGSEFQNYHFKP 299
           K+L EE+ +   +  +    P
Sbjct: 316 KELVEEAFSLACKLGDLGMVP 336


>gi|9755668|emb|CAC01820.1| putative protein [Arabidopsis thaliana]
          Length = 532

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 144/275 (52%), Gaps = 26/275 (9%)

Query: 2   YTSLIYGWCK-INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +  ++ GWC  I     AER   EM   GV+ +VV+Y+ +++   +  SL+         
Sbjct: 229 FNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLN--------- 279

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE-KGICPTVATYSS 119
               K+FD M+   IEPD   ++ V+H  ++A     + + +  M+E KGI P V TY+S
Sbjct: 280 -KVLKLFDRMKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNS 338

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++K LC   + E+A+++  EM+  G+ P+  TY+ F +  R  ++     +L  +M++ G
Sbjct: 339 LIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMRILRTGEEV---FELLAKMRKMG 395

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C P + +Y +LI         D V  +W+++K   +GPDL SY ++IHGL    K +EA
Sbjct: 396 -CEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEA 454

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTW 274
             Y+ EM +KG+ P +             DM+++W
Sbjct: 455 YGYYKEMKDKGMRPNENV----------EDMIQSW 479



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 23/188 (12%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIE-RGVEPNVVTYNVLLNGVCR------------- 46
           +Y ++++   K + +  A   +  M E +G+EPNVVTYN L+  +C+             
Sbjct: 299 VYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDE 358

Query: 47  --RASLHPSER----FEKTIRNAEKVFD---EMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
                L P+ R    F + +R  E+VF+   +MR  G EP V ++ +++    R      
Sbjct: 359 MLEKGLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDN 418

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
            L   + MKEK + P +++Y  ++  L   G+IE+A     EM   G+ P+    +    
Sbjct: 419 VLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRPNENVEDMIQS 478

Query: 158 EYRGRKDA 165
            + G++ A
Sbjct: 479 WFSGKQYA 486


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 138/273 (50%), Gaps = 12/273 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+ K   ++ A     EM++RG+ P++ TYN ++N +C+           + + 
Sbjct: 219 YNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCK----------ARAMD 268

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE +  +M  +G+ PD  +++ +++ YS   Q + ++     M  +GI P V T +S++
Sbjct: 269 KAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLM 328

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+I+DA ++   M   G      +Y      Y  +       +L+  M  DG+ 
Sbjct: 329 ASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGI- 387

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ H +N+LI  +     +D    I+N+++  G+ PD+ +Y+ +I  LC   K  +A +
Sbjct: 388 APDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVE 447

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL-IQSDMLRT 273
            F +MI++G+ P   T+  L +G     D+L+ 
Sbjct: 448 KFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKA 480



 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 132/288 (45%), Gaps = 26/288 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTI 60
           Y SLIYG+    +   A R   +M  +G+ P+VVT N L+  +C+   +  + + F+   
Sbjct: 289 YNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMA 348

Query: 61  RNAEK------------------------VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
              +K                        +F+ M   GI PD   F++++  Y++     
Sbjct: 349 MKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLD 408

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    N M+E+G+ P V TYS+V+  LC  G+++DA E   +M+  GV PS  TY+   
Sbjct: 409 RATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLI 468

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           + +    D   A  L  QM   G+  P++  +N +I     L R+   + I++     GL
Sbjct: 469 QGFCTHGDLLKAKDLVLQMMNKGM-RPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGL 527

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            P++  Y  L+ G C   K + A + F  M+  G+ P  V + TL  G
Sbjct: 528 HPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNG 575



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 127/268 (47%), Gaps = 11/268 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++  LI  + K   +D A     EM E+GVEP+VVTY+ ++  +CR   +          
Sbjct: 393 IFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMD--------- 443

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A + F++M  +G+ P ++++  ++  +        + D +  M  KG+ P +  ++ +
Sbjct: 444 -DAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFI 502

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  GR+ DA+ +    +  G+ P+   YN     Y        A++++  M   G+
Sbjct: 503 INNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGI 562

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+  Y  L+  +  + R+D    ++ ++   G+ P    Y +++HGL +  +   A 
Sbjct: 563 -QPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAK 621

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             F EM E G+   + T+  +  GL ++
Sbjct: 622 VKFHEMTESGIAMDRYTYSIVLGGLFKN 649



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 137/296 (46%), Gaps = 28/296 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           Y+++I   C+I ++D A     +MI++GV P++ TY+ L+ G C    L  ++       
Sbjct: 429 YSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMM 488

Query: 56  ----------FEKTIRN---------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                     F   I N         A+ +FD     G+ P+V  ++ ++  Y    + +
Sbjct: 489 NKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKME 548

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   + M   GI P V  Y ++V   C  GRI++   L  E++  G+ PS   YN   
Sbjct: 549 NALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIIL 608

Query: 157 KE-YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              ++  +     +K + +M E G+ + + ++Y+I++G     +  D    ++ ++    
Sbjct: 609 HGLFQAGRTVPAKVK-FHEMTESGIAM-DRYTYSIVLGGLFKNSCSDEAILLFKELHAMN 666

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           +  D+ +  ++I G+ + ++ +EA   F  +   GL+P  VT+  +   LI+  ++
Sbjct: 667 VKIDITTLNIMIAGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLV 722



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 109/216 (50%), Gaps = 2/216 (0%)

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           R + P + ++ I++   +RAH+P+L+L     + + G+       S++++ LC   R  +
Sbjct: 102 RVLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAE 161

Query: 133 AEE-LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG-LCVPNMHSYNI 190
           A + LL  M   G  P   +Y    K     + +  A +L R M E G +C+PN  +YN 
Sbjct: 162 ALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNT 221

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           +I  F     ++   +++N++   G+ PDL +Y  +++ LC+ +   +A     +M++KG
Sbjct: 222 VIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKG 281

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +LP   T+ +L  G   +   +   R+ KK+  + I
Sbjct: 282 VLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGI 317



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 115/251 (45%), Gaps = 14/251 (5%)

Query: 28  RGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 87
           R + P + TY +L++  C RA      R + T+      F ++   G+  D    S +L 
Sbjct: 102 RVLSPTLHTYGILMD-CCTRA-----HRPKLTL----AFFGQVLKTGLGIDTIMISNLLR 151

Query: 88  VYSRAHQPQLSLD-KLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG-V 145
               A +   +LD  L+ M   G  P V +Y  V+K LCS  +   A+ELL  M   G V
Sbjct: 152 GLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAV 211

Query: 146 C-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           C P+A  YN     +    D N A  L+ +M + G+  P++ +YN ++        MD  
Sbjct: 212 CLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGIS-PDLSTYNCVVNALCKARAMDKA 270

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             I   +   G+ PD  +Y  LI+G     +WKEA +   +M  +G+LP  VT  +L   
Sbjct: 271 EAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMAS 330

Query: 265 LIQSDMLRTWR 275
           L +   ++  R
Sbjct: 331 LCKHGKIKDAR 341



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 133/289 (46%), Gaps = 14/289 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +I   CK+ R+  A+      I  G+ PNV+ YN L++G C    +           
Sbjct: 499 FNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKM----------E 548

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA +VFD M   GI+P+V  +  +++ Y +  +    L     +  KGI P+   Y+ ++
Sbjct: 549 NALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIIL 608

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR   A+    EM  +G+     TY+           ++ A+ L++++    + 
Sbjct: 609 HGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVK 668

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++ + NI+I     + R++  ++++  +  SGL P + +Y++++  L ++   +EA  
Sbjct: 669 I-DITTLNIMIAGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADD 727

Query: 242 YFVEMIEKGL-LPQKVTFETLYRGLIQS-DMLRTWRRLKKKLDEESITF 288
            F  M   G   P       + R L++  +++R    L  K+DE S + 
Sbjct: 728 MFSSMENAGCEQPNSQLLNHVVRELLEKREIVRAGTYL-SKIDERSFSL 775



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 123/294 (41%), Gaps = 12/294 (4%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           + +R  +   F G++++ G+  + +  + LL G+C           ++T    + +   M
Sbjct: 120 RAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEA---------KRTAEALDILLHRM 170

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG-IC-PTVATYSSVVKCLCSCG 128
              G  PDV S+ IVL       +   + + L  M E G +C P    Y++V+      G
Sbjct: 171 PHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEG 230

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
            +  A +L  EMV+ G+ P   TYNC        +  + A  + RQM + G+ +P+  +Y
Sbjct: 231 DVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGV-LPDNWTY 289

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N LI  + +  +      +   +   G+ PD+ +   L+  LC+  K K+A   F  M  
Sbjct: 290 NSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAM 349

Query: 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR 302
           KG      +++ +  G      L     L   +  + I   S   N   K Y +
Sbjct: 350 KGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAK 403


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 152/312 (48%), Gaps = 27/312 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y ++I GWCK+ R+D A +   EM+ +G V+P  V YN L+ G C +  L  +  +   +
Sbjct: 224 YGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRM 283

Query: 61  -------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                      A ++ +EM  +G+  DV +++I+++ + +    
Sbjct: 284 VERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNV 343

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + +L+    M  +G+  TV TY+S++  L   G++++ ++L  E VR G+ P    YN  
Sbjct: 344 KKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 403

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +    + + A ++  +M++  +  P+  +YN L+     L R+D  R++ +++   G
Sbjct: 404 INSHSTSGNIDRAFEIMGEMEKKRIA-PDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRG 462

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           + PDL +Y  LI G   K   K+A +   EM+ KG  P  +T+  L +GL ++       
Sbjct: 463 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 522

Query: 276 RLKKKLDEESIT 287
            + K++ E  IT
Sbjct: 523 NMVKEMVENGIT 534



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 140/307 (45%), Gaps = 52/307 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYN---------------------- 38
           MY +LI G+C   ++D A  +   M+ERGV   V TYN                      
Sbjct: 259 MYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEM 318

Query: 39  -------------VLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85
                        +L+NG C+          E  ++ A ++F+ M  RG+   V +++ +
Sbjct: 319 GGKGLALDVFTYNILINGHCK----------EGNVKKALEIFENMSRRGVRATVVTYTSL 368

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           ++  S+  Q Q +    +    +GI P +  Y++++    + G I+ A E++GEM +  +
Sbjct: 369 IYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRI 428

Query: 146 CPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMD 202
            P   TYN   +     GR D   A KL  +M + G+  P++ +YN LI G  M  +  D
Sbjct: 429 APDDVTYNTLMRGLCLLGRVDE--ARKLIDEMTKRGIQ-PDLVTYNTLISGYSMKGDVKD 485

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
            +R I N++   G  P L +Y  LI GLC+  +  +A     EM+E G+ P   T+ +L 
Sbjct: 486 ALR-IRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 544

Query: 263 RGLIQSD 269
            GL   D
Sbjct: 545 EGLTTED 551



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 10/220 (4%)

Query: 48  ASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE 107
           ASLHP      +        D  R+R +    T+F+I+L     A +P  +L+ L  M  
Sbjct: 124 ASLHPLLSALPSAPAFALFADMFRLR-LPLCTTTFNIMLRHLCSAGKPARALELLRQMPR 182

Query: 108 KGICPTVATYSSVVKCLCSCGRIEDAEELLGEM-VRNGVCPSAETYNCFFKEY--RGRKD 164
               P   TY++V+   CS GR++ A +++ EM  R G+ P+  TY      +   GR D
Sbjct: 183 ----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVD 238

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
              A+K++ +M   G   P    YN LIG +    ++D      + +   G+   + +Y 
Sbjct: 239 E--AVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYN 296

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           +L+H L    +  EA +   EM  KGL     T+  L  G
Sbjct: 297 LLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILING 336


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 136/285 (47%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L++G CK   +  A   + EM  RG EPNV+TY +L+NG+C+   L           
Sbjct: 393 YNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLL----------E 442

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V  EM  RG+  +   ++ ++    R  +  ++L+ L+ M  KG  P + TY+S++
Sbjct: 443 EAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLI 502

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   RI++A  L   M+ +G   +  TYN        R     A+ L   M   G C
Sbjct: 503 YGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRG-C 561

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  +YN LI  F  +  ++   E++  +   GLG D  S  ++I+GLC+  K   A +
Sbjct: 562 TLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFE 621

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +  + I +G +P  VT+ ++  GL +   ++    L  +L  E +
Sbjct: 622 FLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGV 666



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 142/289 (49%), Gaps = 27/289 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH---------- 51
           +  +I+G CK+N+I  A + +  M+ RG  P+ +TY  LL+G+CR   L+          
Sbjct: 291 FNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP 350

Query: 52  -PSERFEKTIRN----------AEKVFDEMRVR-GIEPDVTSFSIVLHVYSRAHQPQLSL 99
            P+     T+ N          A+   +E  +  G +PD+ +++I++H   +      + 
Sbjct: 351 CPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFAR 410

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           D +N M  +G  P V TY+ +V  LC  G +E+A  +L EM   G+  ++  YNC     
Sbjct: 411 DLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICAL 470

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
             ++  + A+ L  +M   G C P++ +YN LI     ++R+D    +++++   G   +
Sbjct: 471 CRKEKVHVALNLLSEMCTKG-CKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVAN 529

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             +Y  LIH L  +  +++A     +M+ +G    K+T    Y GLI++
Sbjct: 530 NVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKIT----YNGLIKA 574



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 127/281 (45%), Gaps = 22/281 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI+   + N++  A + L EM   G  P+V T+N +++G+C+   +H         
Sbjct: 255 VYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIH--------- 305

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGI---CPTVATY 117
            +A K+ D M +RG  PD  ++  +LH   R       + KLN  ++  I   CP  A  
Sbjct: 306 -DATKLVDRMLLRGFYPDNMTYGFLLHGLCR-------IGKLNEARKILIKIPCPNNAIL 357

Query: 118 SSVVKCLCSCGRIEDAEELLGE-MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           ++++      G++++A+  L E M+  G  P   TYN            + A  L  +M 
Sbjct: 358 NTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMS 417

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G C PN+ +Y IL+        ++    + +++   GL  +   Y  LI  LC K+K 
Sbjct: 418 RRG-CEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKV 476

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
             A     EM  KG  P   T+ +L  GL + D +    RL
Sbjct: 477 HVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRL 517



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 8/214 (3%)

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
           EP   S+ +VL +    + PQ++ +    M  KG+ PTV T+  V+K LC    ++ A  
Sbjct: 180 EPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACS 239

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           LL +M ++G  P++  Y         +   + A+KL  +M   G C+P++ ++N +I   
Sbjct: 240 LLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMG-CMPDVQTFNDVIHGL 298

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
             +N++    ++ + +   G  PD  +Y  L+HGLC   K  EA +  +++      P  
Sbjct: 299 CKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP----CPNN 354

Query: 256 VTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
               TL  G + S  L+  +     L+E  I FG
Sbjct: 355 AILNTLINGYVMSGQLKEAQSF---LNETMINFG 385



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 121/291 (41%), Gaps = 20/291 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+ G C      +A     +M+ +GV P V T+ +++  +C              + +A 
Sbjct: 193 LVTGNCP----QVATNVFYDMLSKGVSPTVFTFGIVMKALCMF----------NEVDSAC 238

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +  +M   G  P+   +  ++H  S+ +Q   +L  L  M   G  P V T++ V+  L
Sbjct: 239 SLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGL 298

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C   +I DA +L+  M+  G  P   TY             N A K+  ++       PN
Sbjct: 299 CKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP-----CPN 353

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVK-GSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
               N LI  ++   ++   +   N+     G  PD+ +Y +L+HGLC++     A    
Sbjct: 354 NAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLV 413

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
            EM  +G  P  +T+  L  GL ++ +L     +  ++    +T  S   N
Sbjct: 414 NEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYN 464



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 114/258 (44%), Gaps = 14/258 (5%)

Query: 8   GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVF 67
             C  N +D A   L +M + G  PN + Y  L++ + ++            +  A K+ 
Sbjct: 227 ALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQK----------NQVSEALKLL 276

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127
           +EM V G  PDV +F+ V+H   + ++   +   ++ M  +G  P   TY  ++  LC  
Sbjct: 277 EEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRI 336

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
           G++ +A ++L ++     CP+    N     Y        A     +   +    P++ +
Sbjct: 337 GKLNEARKILIKIP----CPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFT 392

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           YNIL+        +   R++ N++   G  P++ +Y +L++GLC+    +EA     EM 
Sbjct: 393 YNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMS 452

Query: 248 EKGLLPQKVTFETLYRGL 265
            +GL    V +  L   L
Sbjct: 453 ARGLTINSVIYNCLICAL 470



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 30/236 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           Y SLIYG CK++RID A R    M+  G   N VTYN L++ + RR +   +        
Sbjct: 498 YNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDML 557

Query: 60  --------------------IRNAEK---VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               + N EK   ++++M + G+  D  S +I+++   +  +  
Sbjct: 558 FRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVD 617

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + + L     +G  P + TY+SV+  LC  GRI++A  L   +   GV P A TYN F 
Sbjct: 618 NAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFI 677

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL----NRMDMVREIW 208
                    N A   + +  E+G  VP+  ++N+L+   +      N   ++ E+W
Sbjct: 678 SWQCKEGMVNDACLFFYRGIENGF-VPSNLTWNVLVYTLLKQSNQENNFFVLDELW 732



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 80/175 (45%)

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
           +KG C T   Y   +  L + G+ +  ++LL +M   G+      +    K Y       
Sbjct: 105 QKGYCHTFDVYYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPG 164

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            A++L   M+   LC P   SY++++ + +  N   +   ++ D+   G+ P + ++ ++
Sbjct: 165 QAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIV 224

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +  LC   +   AC    +M + G +P  + ++TL   L Q + +    +L +++
Sbjct: 225 MKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEM 279


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 129/253 (50%), Gaps = 11/253 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI+G+C   ++D A +    M+ + + P++VTYN L++G+CR+  L           
Sbjct: 89  FTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLD---------- 138

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++D+M  R I P+  ++SI++  +    Q + +   L+ M  KGI P + TY+S++
Sbjct: 139 KANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSII 198

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C  G +   ++ L +M+ N V P   TYN     Y      + A KL   M+++ + 
Sbjct: 199 KGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKV- 257

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN+LI  F     +     I+  +   G+ PD  +Y  +I+G       KEA Q
Sbjct: 258 QPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQ 317

Query: 242 YFVEMIEKGLLPQ 254
              EM+++G  P 
Sbjct: 318 LHDEMLQRGFAPD 330



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 146/303 (48%), Gaps = 46/303 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT +I G+C+   +  A R   EM+  G  P+VVTYN LLNG+C+          E+ +
Sbjct: 18  IYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK----------ERRL 67

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVY------SRAHQ-------------------- 94
            +AE + +EMR RG+ PD+ +F+ ++H Y       +A Q                    
Sbjct: 68  LDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTL 127

Query: 95  -----PQLSLDKLNF----MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
                 Q  LDK N     M  + I P   TYS ++   C  G++EDA   L EM+  G+
Sbjct: 128 IDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGI 187

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P+  TYN   K Y    + +   K  ++M  + +  P++ +YN LI  ++  ++M    
Sbjct: 188 LPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVS-PDLITYNTLIHGYIKEDKMHDAF 246

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           ++ N ++   + PD+ +Y MLI+G       +EA   F +M  KG+ P + T+ ++  G 
Sbjct: 247 KLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGH 306

Query: 266 IQS 268
           + +
Sbjct: 307 VTA 309



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 115/232 (49%), Gaps = 6/232 (2%)

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
           EMR  G+ PD   +++V+  + RA     +L   + M   G  P V TY++++  LC   
Sbjct: 6   EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 65

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           R+ DAE LL EM   GV P   T+      Y      + A++L+  M    L  P++ +Y
Sbjct: 66  RLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRL-RPDIVTY 124

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N LI        +D   ++W+D+    + P+  +Y++LI   CEK + ++A  +  EMI 
Sbjct: 125 NTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMIN 184

Query: 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL-----DEESITFGSEFQNY 295
           KG+LP  +T+ ++ +G  +S  +   ++  +K+       + IT+ +    Y
Sbjct: 185 KGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGY 236



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 126/266 (47%), Gaps = 11/266 (4%)

Query: 21  FLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80
           +L EM   G+ P+ V Y +++ G CR             + +A +V DEM   G  PDV 
Sbjct: 3   YLREMRCFGLVPDGVIYTMVIGGFCRAG----------LMSDALRVRDEMVGCGCLPDVV 52

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           +++ +L+   +  +   +   LN M+E+G+ P + T+++++   C  G+++ A +L   M
Sbjct: 53  TYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTM 112

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
           +   + P   TYN        + D + A  L+  M    +  PN  +Y+ILI       +
Sbjct: 113 LNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREI-FPNHVTYSILIDSHCEKGQ 171

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           ++      +++   G+ P++ +Y  +I G C      +  ++  +M+   + P  +T+ T
Sbjct: 172 VEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNT 231

Query: 261 LYRGLIQSDMLRTWRRLKKKLDEESI 286
           L  G I+ D +    +L   +++E +
Sbjct: 232 LIHGYIKEDKMHDAFKLLNMMEKEKV 257


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 149/336 (44%), Gaps = 45/336 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK+     A R LG M+++  +PNV  YN +++ +C+          ++ + 
Sbjct: 136 YGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCK----------DRQVT 185

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM  +GI PD+ +++ ++H      + +     LN M +  I P V ++++VV
Sbjct: 186 EAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVV 245

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKED-- 178
             LC  G++ +A +++ +M++ G C P+  +YN     Y   +  + AM L+ +M     
Sbjct: 246 DALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQEL 305

Query: 179 ------------GLC--------------------VPNMHSYNILIGMFMALNRMDMVRE 206
                       GLC                    +PN+ +Y IL+        +     
Sbjct: 306 IPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMA 365

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +   ++GS L PD+    + I G+C   + + A   F  +  KGL P   T+  +  GL 
Sbjct: 366 LLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLC 425

Query: 267 QSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR 302
           +  +L    +L +++DE   T      N   + + R
Sbjct: 426 RRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLR 461



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 135/284 (47%), Gaps = 12/284 (4%)

Query: 5   LIYGWCKINR--IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           LI  +C +NR  I  A     +MI  G  P+VVTY  L+NG+C+  +   + R       
Sbjct: 102 LINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIR------- 154

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
              +   M  +  +P+V +++ ++    +  Q   + +  + M  KGI P + TY+S++ 
Sbjct: 155 ---LLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIH 211

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC+    +    LL EMV + + P   ++N              A  +  +M + G C+
Sbjct: 212 ALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCM 271

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN+ SYN LI  +  + R+D    ++ ++    L PD  +Y+ LIHGLC  ++ ++A   
Sbjct: 272 PNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIAL 331

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           F EM+    +P  VT+  L   L ++  L     L K ++  ++
Sbjct: 332 FHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNL 375



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 25/204 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y +LI G+CKI RID A    GEM  + + P+ VTY+ L++G+C    L  +        
Sbjct: 277 YNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMV 336

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                + +  A  +   +    ++PD+   +I +    RA + +
Sbjct: 337 ACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELE 396

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + D  + +  KG+ P V TYS ++  LC  G +++A +L  EM  NG   +   YN   
Sbjct: 397 AARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTIT 456

Query: 157 KEYRGRKDANGAMKLYRQMKEDGL 180
           + +    + + A++L ++M   G 
Sbjct: 457 RGFLRNNETSRAIQLLQEMVARGF 480


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 149/299 (49%), Gaps = 46/299 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMI----------------------------------- 26
           Y +L+YG+C++  ++MA R   +MI                                   
Sbjct: 294 YRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLG 353

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
           + G+ PNV  YN L++ +C+      +ERF+    +A+++F EM  RG+EP+  +++I++
Sbjct: 354 DLGMVPNVFAYNALIDKLCK------NERFD----DADRLFKEMAGRGLEPNEVTYAILI 403

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
           H   +    + +L   + M++KGI  TV  Y+S++   C  G ++ A  LL  MV+ G+ 
Sbjct: 404 HALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLT 463

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+A +Y+          D +  M+L+R+M E G+   N +++  LI  F    +MD    
Sbjct: 464 PTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNN-YTFTALINGFCKDKKMDEAAR 522

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +++ +  S + P+  ++ ++I G C     ++A Q + +M+E GL P   T+ +L  GL
Sbjct: 523 LFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGL 581



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 136/322 (42%), Gaps = 62/322 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +I G+C +  I  A +   +M+E G++P+  TY  L++G+C  + +  +  F   + 
Sbjct: 539 FNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLE 598

Query: 62  NAEKV-------------------------FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           N+  V                         +DEM VRG++ D+ SF+I+++   + H  +
Sbjct: 599 NSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKE 658

Query: 97  LSLDKLNFMKEKGI-----------------------------------CPTVATYSSVV 121
            S      MKE+G+                                    P   T++ ++
Sbjct: 659 KSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLI 718

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +  AE L  EM+   V P+  TYNCF   +    D   A  L+  M +  L 
Sbjct: 719 NNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLA 778

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++ S+NILI       ++    ++ + +  SG  PD  SY+ +IH LC+     +A +
Sbjct: 779 --SIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFE 836

Query: 242 YFVEMIEKGLLPQKVTFETLYR 263
            + EM+ KGL P  V +    R
Sbjct: 837 LWNEMLYKGLKPDVVAYNIFIR 858



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 129/249 (51%), Gaps = 19/249 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI   CK  R D A+R   EM  RG+EPN VTY +L++ +C+R            I 
Sbjct: 364 YNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRG----------MIE 413

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK----LNFMKEKGICPTVATY 117
           +A  +FD+MR +GI+  V  ++ +++ Y +    Q SLD+    L+ M ++G+ PT A+Y
Sbjct: 414 DALCLFDKMRDKGIKVTVYPYNSLINGYCK----QGSLDRARGLLSGMVKEGLTPTAASY 469

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           S ++  LC  G +    EL  EM   G+  +  T+      +   K  + A +L+ +M +
Sbjct: 470 SPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMID 529

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
             + +PN  ++N++I  +  +  +    ++++ +   GL PD  +Y  LI GLC      
Sbjct: 530 SNV-IPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVS 588

Query: 238 EACQYFVEM 246
           +A ++  ++
Sbjct: 589 KANEFVADL 597



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 122/285 (42%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+YG CK  R+  A      M+  GV  + VTY  L+ G CR       E  E  +R
Sbjct: 259 YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRM------EELEMALR 312

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +  +M   G  P   + S ++    +    + +      + + G+ P V  Y++++
Sbjct: 313 ----ITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALI 368

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R +DA+ L  EM   G+ P+  TY         R     A+ L+ +M++ G+ 
Sbjct: 369 DKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIK 428

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V  ++ YN LI  +     +D  R + + +   GL P   SY+ LI GLC         +
Sbjct: 429 V-TVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCME 487

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM E+G+     TF  L  G  +   +    RL  K+ + ++
Sbjct: 488 LHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNV 532



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 125/285 (43%), Gaps = 11/285 (3%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           + +++   KI +  +A     +M++ GV  +   Y   +   C            + +  
Sbjct: 190 SQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCE----------SRNLDG 239

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  +   M   G++     ++++++   +  + Q +++  N M   G+     TY ++V 
Sbjct: 240 ARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVY 299

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C    +E A  +  +M+R G  PS    +    E R ++    A  L  ++ + G+ V
Sbjct: 300 GFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM-V 358

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN+ +YN LI       R D    ++ ++ G GL P+  +Y +LIH LC++   ++A   
Sbjct: 359 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 418

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           F +M +KG+      + +L  G  +   L   R L   + +E +T
Sbjct: 419 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLT 463



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 140/312 (44%), Gaps = 40/312 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHP--------S 53
           Y SLI G+CK   +D A   L  M++ G+ P   +Y+ L+ G+CR   L          +
Sbjct: 434 YNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMA 493

Query: 54  ERF-----------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           ER                  +K +  A ++FD+M    + P+  +F++++  Y      +
Sbjct: 494 ERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIR 553

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM-----VRNGVCPSAET 151
            +    + M E G+ P   TY S++  LC    +  A E + ++     V N    +A  
Sbjct: 554 KAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALL 613

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE--IWN 209
           Y  FF+E R  +       L+ +M   G+ + ++ S+ I++  + AL + D  +   ++ 
Sbjct: 614 YG-FFREGRFTE----TYHLWDEMAVRGVKL-DLVSFTIIV--YAALKQHDKEKSCVLFR 665

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           ++K  G+ PD   YT +I  L +++   +A   + +M+  G  P  VT   L   L +S 
Sbjct: 666 EMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSG 725

Query: 270 MLRTWRRLKKKL 281
            L +   L K++
Sbjct: 726 YLGSAELLCKEM 737



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 12/191 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI   CK   +  AE    EM+   V PN  TYN  L+       +  ++     + 
Sbjct: 714 HTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAM- 772

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                     ++G    + SF+I++    +A + Q ++D ++ + E G  P   +YS+++
Sbjct: 773 ----------LQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTII 822

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G I  A EL  EM+  G+ P    YN F +      +++ A+ +Y  M   G+ 
Sbjct: 823 HELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGV- 881

Query: 182 VPNMHSYNILI 192
            PN  +Y  L+
Sbjct: 882 QPNWDTYRALL 892



 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 18/201 (8%)

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
           L      GI     T S ++  L    +   A +L  +M+++GV      Y    + Y  
Sbjct: 174 LGLSLSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCE 233

Query: 162 RKDANGAMKLYRQMKEDGL---CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218
            ++ +GA  L  +M+ +G+    VP    YN+L+       R+    E+ N +   G+  
Sbjct: 234 SRNLDGARGLVVRMESEGVKASAVP----YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTA 289

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
           D  +Y  L++G C  ++ + A +   +MI  G +P +     +       D LR     K
Sbjct: 290 DEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMI------DELR-----K 338

Query: 279 KKLDEESITFGSEFQNYHFKP 299
           K+L EE+ +   +  +    P
Sbjct: 339 KELVEEAFSLACKLGDLGMVP 359


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 136/285 (47%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L++G CK   +  A   + EM  RG EPNV+TY +L+NG+C+   L           
Sbjct: 393 YNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLE---------- 442

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V  EM  RG+  +   ++ ++    R  +  ++L+ L+ M  KG  P + TY+S++
Sbjct: 443 EAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLI 502

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   RI++A  L   M+ +G   +  TYN        R     A+ L   M   G C
Sbjct: 503 YGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRG-C 561

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  +YN LI  F  +  ++   E++  +   GLG D  S  ++I+GLC+  K   A +
Sbjct: 562 TLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFE 621

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +  + I +G +P  VT+ ++  GL +   ++    L  +L  E +
Sbjct: 622 FLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGV 666



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 142/289 (49%), Gaps = 27/289 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH---------- 51
           +  +I+G CK+N+I  A + +  M+ RG  P+ +TY  LL+G+CR   L+          
Sbjct: 291 FNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP 350

Query: 52  -PSERFEKTIRN----------AEKVFDEMRVR-GIEPDVTSFSIVLHVYSRAHQPQLSL 99
            P+     T+ N          A+   +E  +  G +PD+ +++I++H   +      + 
Sbjct: 351 CPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFAR 410

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           D +N M  +G  P V TY+ +V  LC  G +E+A  +L EM   G+  ++  YNC     
Sbjct: 411 DLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICAL 470

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
             ++  + A+ L  +M   G C P++ +YN LI     ++R+D    +++++   G   +
Sbjct: 471 CRKEKVHVALNLLSEMCTKG-CKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVAN 529

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             +Y  LIH L  +  +++A     +M+ +G    K+T    Y GLI++
Sbjct: 530 NVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKIT----YNGLIKA 574



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 127/281 (45%), Gaps = 22/281 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI+   + N++  A + L EM   G  P+V T+N +++G+C+   +H         
Sbjct: 255 VYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIH--------- 305

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGI---CPTVATY 117
            +A K+ D M +RG  PD  ++  +LH   R       + KLN  ++  I   CP  A  
Sbjct: 306 -DATKLVDRMLLRGFYPDNMTYGFLLHGLCR-------IGKLNEARKILIKIPCPNNAIL 357

Query: 118 SSVVKCLCSCGRIEDAEELLGE-MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           ++++      G++++A+  L E M+  G  P   TYN            + A  L  +M 
Sbjct: 358 NTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMS 417

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G C PN+ +Y IL+        ++    + +++   GL  +   Y  LI  LC K+K 
Sbjct: 418 RRG-CEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKV 476

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
             A     EM  KG  P   T+ +L  GL + D +    RL
Sbjct: 477 HVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRL 517



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 8/214 (3%)

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
           EP   S+ +VL +    + PQ++ +    M  KG+ PTV T+  V+K LC    ++ A  
Sbjct: 180 EPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACS 239

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           LL +M ++G  P++  Y         +   + A+KL  +M   G C+P++ ++N +I   
Sbjct: 240 LLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMG-CMPDVQTFNDVIHGL 298

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
             +N++    ++ + +   G  PD  +Y  L+HGLC   K  EA +  +++      P  
Sbjct: 299 CKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP----CPNN 354

Query: 256 VTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
               TL  G + S  L+  +     L+E  I FG
Sbjct: 355 AILNTLINGYVMSGQLKEAQSF---LNETMINFG 385



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 121/291 (41%), Gaps = 20/291 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+ G C      +A     +M+ +GV P V T+ +++  +C              + +A 
Sbjct: 193 LVTGNCP----QVATNVFYDMLSKGVSPTVFTFGIVMKALC----------MFNEVDSAC 238

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +  +M   G  P+   +  ++H  S+ +Q   +L  L  M   G  P V T++ V+  L
Sbjct: 239 SLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGL 298

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C   +I DA +L+  M+  G  P   TY             N A K+  ++       PN
Sbjct: 299 CKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP-----CPN 353

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVK-GSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
               N LI  ++   ++   +   N+     G  PD+ +Y +L+HGLC++     A    
Sbjct: 354 NAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLV 413

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
            EM  +G  P  +T+  L  GL ++ +L     +  ++    +T  S   N
Sbjct: 414 NEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYN 464



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 114/258 (44%), Gaps = 14/258 (5%)

Query: 8   GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVF 67
             C  N +D A   L +M + G  PN + Y  L++ + ++            +  A K+ 
Sbjct: 227 ALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQK----------NQVSEALKLL 276

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127
           +EM V G  PDV +F+ V+H   + ++   +   ++ M  +G  P   TY  ++  LC  
Sbjct: 277 EEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRI 336

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
           G++ +A ++L ++     CP+    N     Y        A     +   +    P++ +
Sbjct: 337 GKLNEARKILIKIP----CPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFT 392

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           YNIL+        +   R++ N++   G  P++ +Y +L++GLC+    +EA     EM 
Sbjct: 393 YNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMS 452

Query: 248 EKGLLPQKVTFETLYRGL 265
            +GL    V +  L   L
Sbjct: 453 ARGLTINSVIYNCLICAL 470



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 30/236 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           Y SLIYG CK++RID A R    M+  G   N VTYN L++ + RR +   +        
Sbjct: 498 YNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDML 557

Query: 60  --------------------IRNAEK---VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               + N EK   ++++M + G+  D  S +I+++   +  +  
Sbjct: 558 FRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVD 617

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + + L     +G  P + TY+SV+  LC  GRI++A  L   +   GV P A TYN F 
Sbjct: 618 NAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFI 677

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL----NRMDMVREIW 208
                    N A   + +  E+G  VP+  ++N+L+   +      N   ++ E+W
Sbjct: 678 SWQCKEGMVNDACSFFYRGIENGF-VPSNLTWNVLVYTLLKQSNQENNFFVLDELW 732



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 80/175 (45%)

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
           +KG C T   Y   +  L + G+ +  ++LL +M   G+      +    K Y       
Sbjct: 105 QKGYCHTFDVYYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPG 164

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            A++L   M+   LC P   SY++++ + +  N   +   ++ D+   G+ P + ++ ++
Sbjct: 165 QAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIV 224

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +  LC   +   AC    +M + G +P  + ++TL   L Q + +    +L +++
Sbjct: 225 MKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEM 279


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 133/268 (49%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI   CK   +D A   L  M  +G+ PN+ TYN ++ G+ +           + + 
Sbjct: 378 YTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLK----------ARRLD 427

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ + M   G++P   S+ + +  Y ++  P  ++D    MK++GI P++A  ++ +
Sbjct: 428 EALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASL 487

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GRI +AE++  ++ + G+ P + TYN   K Y      + A +L  +M   G C
Sbjct: 488 YTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKG-C 546

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++   N LI       R+D   +++  +K   L P + +Y +L+ GL ++ K  +A +
Sbjct: 547 EPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALE 606

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            F  M E G  P  +TF +L   L ++D
Sbjct: 607 LFGSMTESGCPPNTITFNSLLDCLSKND 634



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 148/317 (46%), Gaps = 31/317 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------R 47
           YT  I    +  RID A     EM + G  P+V+TY VL++ +C               R
Sbjct: 273 YTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMR 332

Query: 48  ASLHPSER---------FEKT--IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           AS H  +R         F K   +   ++ ++EM V G  PDV +++I++    ++    
Sbjct: 333 ASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVD 392

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + D L+ M  KGI P + TY++++  L    R+++A ELL  M   GV P+A +Y  F 
Sbjct: 393 RAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFI 452

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y    D   A+  +  MK+ G+ +P++ + N  +       R+    +I+ND+   GL
Sbjct: 453 DYYGKSGDPAKAIDTFETMKKRGI-MPSIAACNASLYTLAETGRISEAEDIFNDLHKCGL 511

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWR 275
            PD  +Y ML+    +  +  +A Q   EMI KG  P  +   +L   L ++  +   W+
Sbjct: 512 SPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWK 571

Query: 276 ---RLKK-KLDEESITF 288
              RLK  KL    +T+
Sbjct: 572 MFGRLKNLKLAPTVVTY 588



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 130/271 (47%), Gaps = 22/271 (8%)

Query: 29   GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
            G+ P + +YN L++G      L  S   EK    A ++F++M+  G  P+  +++++L  
Sbjct: 791  GIHPTLESYNCLMDG------LLGSNFTEK----ALELFEDMKSAGTHPNNFTYNLLLDA 840

Query: 89   YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
            + ++ +     D  + M+ +G  P   T++ ++  L     +  A +L  E++     P+
Sbjct: 841  HGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPT 900

Query: 149  AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
              TY            +  AMK++ +M + G C PN   YNILI  F     +D   E++
Sbjct: 901  PCTYGPLIDGLLKAGRSEQAMKIFEEMLDYG-CGPNSVIYNILINGFGKSGEIDFACELF 959

Query: 209  NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
              +   G+ PDL SYT+L+  LC   +  EA QYF E+   GL P  V++  +  GL +S
Sbjct: 960  KKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKS 1019

Query: 269  DMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
                  RRL     +E+++  SE +N    P
Sbjct: 1020 ------RRL-----DEALSLFSEMKNRGISP 1039



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 133/285 (46%), Gaps = 26/285 (9%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHP--------- 52
            Y  L+    K  RI+       EM  RG EPN +T+N++++ + +  +L+          
Sbjct: 834  YNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELM 893

Query: 53   SERFEKT----------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            S  F  T                   A K+F+EM   G  P+   ++I+++ + ++ +  
Sbjct: 894  SGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEID 953

Query: 97   LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
             + +    M ++GI P + +Y+ +V+CLC  GRI++A +   E+   G+ P   +YN   
Sbjct: 954  FACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFII 1013

Query: 157  KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                  +  + A+ L+ +MK  G+  P++++YN LI       ++D+  +++ +++  GL
Sbjct: 1014 NGLGKSRRLDEALSLFSEMKNRGIS-PDLYTYNALILHLGIAGKVDVAVKMYEELQLVGL 1072

Query: 217  GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
             P + +Y  LI G        +A   F +M+  G  P   TF  L
Sbjct: 1073 EPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQL 1117



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 122/297 (41%), Gaps = 44/297 (14%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y  L+ G    N  + A     +M   G  PN  TYN+LL+   +           K I 
Sbjct: 799  YNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGK----------SKRIN 848

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                ++ EMR RG EP+  + +I++    +++    +LD    +      PT  TY  ++
Sbjct: 849  KLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLI 908

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG-- 179
              L   GR E A ++  EM+  G  P++  YN     +    + + A +L+++M ++G  
Sbjct: 909  DGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIR 968

Query: 180  ------------LCV--------------------PNMHSYNILIGMFMALNRMDMVREI 207
                        LC+                    P+  SYN +I       R+D    +
Sbjct: 969  PDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSL 1028

Query: 208  WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            ++++K  G+ PDL +Y  LI  L    K   A + + E+   GL P   T+  L RG
Sbjct: 1029 FSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRG 1085



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 131/293 (44%), Gaps = 31/293 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLN------------------- 42
           Y ++I G  K  R+D A   L  M   GV+P   +Y + ++                   
Sbjct: 413 YNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMK 472

Query: 43  --------GVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ 94
                     C  ASL+      + I  AE +F+++   G+ PD  ++++++  YS+A Q
Sbjct: 473 KRGIMPSIAACN-ASLYTLAETGR-ISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQ 530

Query: 95  PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
              +   L+ M  KG  P V   +S++  L   GR++ A ++ G +    + P+  TYN 
Sbjct: 531 IDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNI 590

Query: 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
                        A++L+  M E G C PN  ++N L+      + +D+  +++  +   
Sbjct: 591 LLTGLGKEGKILKALELFGSMTESG-CPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMM 649

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              PD+ +Y  +I+GL  + +   A  +F +M +K L P  VT  TL  G+++
Sbjct: 650 NCNPDVLTYNTIIYGLIREGRIDYAFWFFHQM-KKFLSPDYVTLCTLIPGVVR 701



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 119/254 (46%), Gaps = 16/254 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+ G+C     + A +    MI  G++P++ TY+ L+  + RR             R   
Sbjct: 211 LLPGFC-----NEALKVYKRMISEGMKPSMKTYSALMVALGRRGD----------TRKIM 255

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            + +EM+  G+ P++ +++I +    RA +   +      M ++G  P V TY+ ++  L
Sbjct: 256 NLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDAL 315

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C+ G+++ A+EL  +M  +   P   TY     ++    D     + + +M+ DG   P+
Sbjct: 316 CAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGY-APD 374

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y ILI        +D   ++ + +   G+ P+L +Y  +I GL + ++  EA +   
Sbjct: 375 VVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLE 434

Query: 245 EMIEKGLLPQKVTF 258
            M   G+ P   ++
Sbjct: 435 NMESLGVKPTAFSY 448



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 2/223 (0%)

Query: 55  RFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV 114
           R ++ I +   VFD M+ + I  ++T++  +    S       +   L  M E G     
Sbjct: 142 REQRRIEDMVFVFDLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNA 201

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            +Y+ ++  L   G   +A ++   M+  G+ PS +TY+        R D    M L  +
Sbjct: 202 YSYNGLIHLLLP-GFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEE 260

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           MK  GL  PN+++Y I I       R+D    I+ ++   G GPD+ +YT+LI  LC   
Sbjct: 261 MKSIGL-RPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAG 319

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           K  +A + +V+M      P +VT+ TL     +   L T +R 
Sbjct: 320 KLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRF 362



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 122/306 (39%), Gaps = 47/306 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+ G  K  +I  A    G M E G  PN +T+N LL+ + +  +          + 
Sbjct: 588 YNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDA----------VD 637

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F  M +    PDV +++ +++   R  +   +    + MK K + P   T  +++
Sbjct: 638 LALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMK-KFLSPDYVTLCTLI 696

Query: 122 KCLCSCGRIEDAEELLGEMVR------------------------------------NGV 145
             +   GR+EDA +++ E V                                     N V
Sbjct: 697 PGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSV 756

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
           C          K    RK A  A  ++ +  ++    P + SYN L+   +  N  +   
Sbjct: 757 CQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKAL 816

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           E++ D+K +G  P+  +Y +L+    + ++  +    + EM  +G  P  +T   +   L
Sbjct: 817 ELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISAL 876

Query: 266 IQSDML 271
           ++S+ L
Sbjct: 877 VKSNNL 882



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 8/187 (4%)

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
            + M++K I   + TY ++ K L   G I  A   L +M   G   +A +YN        
Sbjct: 154 FDLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLLL- 212

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN---DVKGSGLGP 218
               N A+K+Y++M  +G+  P+M +Y+ L+   +AL R    R+I N   ++K  GL P
Sbjct: 213 PGFCNEALKVYKRMISEGM-KPSMKTYSALM---VALGRRGDTRKIMNLLEEMKSIGLRP 268

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
           ++ +YT+ I  L   ++  +A   F EM ++G  P  +T+  L   L  +  L   + L 
Sbjct: 269 NIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELY 328

Query: 279 KKLDEES 285
            K+   S
Sbjct: 329 VKMRASS 335


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 149/319 (46%), Gaps = 31/319 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           Y +LI G+CK+NRID A R L  M  +   P+ VTYN+++  +C R  L  + +      
Sbjct: 161 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLL 220

Query: 56  -------------------FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  +  A K+ DEM  RG++PD+ +++ ++    +     
Sbjct: 221 SDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVD 280

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + + +  ++ KG  P V +Y+ +++ L + G+ E+ E+L+ +M      P+  TY+   
Sbjct: 281 RAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILI 340

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      AM L + MKE GL  P+ +SY+ LI  F    R+D+  E    +   G 
Sbjct: 341 TTLCRDGKIEEAMNLLKLMKEKGL-TPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGC 399

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS-DMLRTWR 275
            PD+ +Y  ++  LC+  K  +A + F ++ E G  P   ++ T++  L  S D +R   
Sbjct: 400 LPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALH 459

Query: 276 ----RLKKKLDEESITFGS 290
                +   +D + IT+ S
Sbjct: 460 MILEMMSNGIDPDEITYNS 478



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 130/272 (47%), Gaps = 15/272 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI        +D A + + EM+ RG++P++ TYN ++ G+C+   +   +R  + +R
Sbjct: 231 YTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMV---DRAFEMVR 287

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N E       ++G EPDV S++I+L       + +     +  M  +   P V TYS ++
Sbjct: 288 NLE-------LKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILI 340

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDG 179
             LC  G+IE+A  LL  M   G+ P A +Y+     +   GR D   A++    M  DG
Sbjct: 341 TTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDV--AIEFLETMISDG 398

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C+P++ +YN ++       + D   EI+  +   G  P+  SY  +   L        A
Sbjct: 399 -CLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRA 457

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
               +EM+  G+ P ++T+ ++   L +  M+
Sbjct: 458 LHMILEMMSNGIDPDEITYNSMISCLCREGMV 489



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 133/270 (49%), Gaps = 17/270 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK   +D A   +  +  +G EP+V++YN+LL     RA L+  +  E    
Sbjct: 266 YNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILL-----RALLNQGKWEE---- 316

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             EK+  +M     +P+V ++SI++    R  + + +++ L  MKEKG+ P   +Y  ++
Sbjct: 317 -GEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLI 375

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR++ A E L  M+ +G  P    YN           A+ A++++ ++ E G C
Sbjct: 376 AAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG-C 434

Query: 182 VPNMHSYNILIGMFMAL-NRMDMVREIWN--DVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
            PN  SYN    MF AL +  D +R +    ++  +G+ PD  +Y  +I  LC +    E
Sbjct: 435 SPNSSSYNT---MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDE 491

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           A +  V+M      P  VT+  +  G  ++
Sbjct: 492 AFELLVDMRSCEFHPSVVTYNIVLLGFCKA 521



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 126/259 (48%), Gaps = 12/259 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T LI G+  +  I  A R + E++E+  +P+V  YN L+NG C+             I +
Sbjct: 128 TKLIKGFFTLRNIPKAVRVM-EILEKFGQPDVFAYNALINGFCKM----------NRIDD 176

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A +V D MR +   PD  +++I++       +  L+L  LN +      PTV TY+ +++
Sbjct: 177 ATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIE 236

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
                G +++A +L+ EM+  G+ P   TYN   +        + A ++ R ++  G   
Sbjct: 237 ATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKG-SE 295

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ SYNIL+   +   + +   ++   +      P++ +Y++LI  LC   K +EA   
Sbjct: 296 PDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNL 355

Query: 243 FVEMIEKGLLPQKVTFETL 261
              M EKGL P   +++ L
Sbjct: 356 LKLMKEKGLTPDAYSYDPL 374



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 129/296 (43%), Gaps = 45/296 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+       + +  E+ + +M     +PNVVTY++L+  +CR          +  I 
Sbjct: 301 YNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCR----------DGKIE 350

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M+ +G+ PD  S+  ++  + R  +  ++++ L  M   G  P +  Y++V+
Sbjct: 351 EAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVL 410

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
             LC  G+ + A E+ G++   G  P++ +YN  F       D   A+ +  +M  +G+ 
Sbjct: 411 ATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGID 470

Query: 181 -----------CV----------------------PNMHSYNILIGMFMALNRMDMVREI 207
                      C+                      P++ +YNI++  F   +R++    +
Sbjct: 471 PDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINV 530

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
              + G+G  P+  +YT+LI G+       EA +   +++    + +  +F+ L+R
Sbjct: 531 LESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISE-YSFKRLHR 585



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 2/187 (1%)

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           + H   R+     SL  L  M  KG  P V   + ++K   +   I  A  ++ E++   
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVM-EILEKF 153

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
             P    YN     +      + A ++  +M+      P+  +YNI+IG   +  ++D+ 
Sbjct: 154 GQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFS-PDTVTYNIMIGSLCSRGKLDLA 212

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            ++ N +      P + +YT+LI     +    EA +   EM+ +GL P   T+ T+ RG
Sbjct: 213 LKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRG 272

Query: 265 LIQSDML 271
           + +  M+
Sbjct: 273 MCKEGMV 279



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 14/142 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+++L   W   ++I      L EM+  G++P+ +TYN +++ +CR          E  +
Sbjct: 444 MFSAL---WSSGDKIRALHMIL-EMMSNGIDPDEITYNSMISCLCR----------EGMV 489

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++  +MR     P V +++IVL  + +AH+ + +++ L  M   G  P   TY+ +
Sbjct: 490 DEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVL 549

Query: 121 VKCLCSCGRIEDAEELLGEMVR 142
           ++ +   G   +A EL  ++VR
Sbjct: 550 IEGIGFAGYRAEAMELANDLVR 571


>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 657

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 147/304 (48%), Gaps = 22/304 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR----RASLHPSERFE 57
           Y  L+   CK N++D A++ L EM  +G  PN V+Y  +++ +C     +     +ERFE
Sbjct: 183 YNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVISSMCEVGMVKEGRQLAERFE 242

Query: 58  KTI----------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK 101
             +                +   ++  EM  +GI P+V S+S +++  S + Q +L+   
Sbjct: 243 PVVSVYNALINGLCKERDYKGGVELMSEMVEKGISPNVISYSTLINELSNSGQIELAFSL 302

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN-GVCPSAETYNCFFKEYR 160
           L  M ++G  P + T SS+VK     G   DA ++  +M+R  G+ P+   YN   + + 
Sbjct: 303 LAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFC 362

Query: 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
              + + A+ ++  M+E G C PN+ +Y  LI  F     ++    IWN +  SG  P++
Sbjct: 363 SHGNIDKAVSVFLHMEEIG-CSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNV 421

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK 280
             YT ++  LC   K+KEA      M ++   P   TF    +GL  +  L    ++ ++
Sbjct: 422 VVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQ 481

Query: 281 LDEE 284
           ++++
Sbjct: 482 MEQQ 485



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 10/233 (4%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G++PNVV YN L+ G C   +          I  A  VF  M   G  P++ ++  +++ 
Sbjct: 346 GLQPNVVAYNTLVQGFCSHGN----------IDKAVSVFLHMEEIGCSPNIRTYGSLING 395

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           +++    + ++   N M   G CP V  Y+S+V+ LC   + ++AE L+  M +    PS
Sbjct: 396 FTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPS 455

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             T+N F K        + A K++RQM++   C PN+ +YN L+      NR++    + 
Sbjct: 456 VPTFNAFIKGLCDAGRLDWAEKVFRQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGLT 515

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            ++   G+     +Y  L+HG C       A Q   +M+  G  P ++T   +
Sbjct: 516 REIFMRGVEWSTSTYNTLLHGSCNAGLPGIALQLVGKMMVNGKSPDEITMNMI 568



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 131/303 (43%), Gaps = 44/303 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ S+I  + ++   + A      + E G +P+V  YN +L+ +            E  I
Sbjct: 112 LFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLG----------ENRI 161

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           +    V+ +M+  G EP+V +++++L    + ++   +   L  M  KG CP   +Y++V
Sbjct: 162 QMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTV 221

Query: 121 VKCLCSCGRIEDAE------------------------------ELLGEMVRNGVCPSAE 150
           +  +C  G +++                                EL+ EMV  G+ P+  
Sbjct: 222 ISSMCEVGMVKEGRQLAERFEPVVSVYNALINGLCKERDYKGGVELMSEMVEKGISPNVI 281

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWN 209
           +Y+    E         A  L  QM + G C PN+H+ + L+ G F+     D + ++WN
Sbjct: 282 SYSTLINELSNSGQIELAFSLLAQMLKRG-CHPNIHTLSSLVKGCFVRGTTFDAL-DMWN 339

Query: 210 D-VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             ++G GL P++ +Y  L+ G C      +A   F+ M E G  P   T+ +L  G  + 
Sbjct: 340 QMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKR 399

Query: 269 DML 271
             L
Sbjct: 400 GSL 402



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 106/234 (45%), Gaps = 23/234 (9%)

Query: 51  HPSERFEKTIR---------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK 101
           H    FE  IR         + + +  +M+++G       F  V+ VY +    + +++ 
Sbjct: 73  HTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEM 132

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
              +KE G  P+V  Y+ V+  L    RI+    +  +M R+G  P+  TYN   K    
Sbjct: 133 FYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCK 192

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG---- 217
               +GA KL  +M   G C PN  SY  +I    ++  + MV+E      G  L     
Sbjct: 193 NNKVDGAKKLLVEMSNKG-CCPNAVSYTTVIS---SMCEVGMVKE------GRQLAERFE 242

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           P +  Y  LI+GLC+++ +K   +   EM+EKG+ P  +++ TL   L  S  +
Sbjct: 243 PVVSVYNALINGLCKERDYKGGVELMSEMVEKGISPNVISYSTLINELSNSGQI 296



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 89/170 (52%), Gaps = 1/170 (0%)

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
           T  T+  +++ L   G+++  + LL +M   G   S + +      YR    A  A++++
Sbjct: 74  TPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMF 133

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
            ++KE G C P++  YN ++   +  NR+ M+  ++ D+K  G  P++ +Y +L+  LC+
Sbjct: 134 YRIKEFG-CDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCK 192

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
             K   A +  VEM  KG  P  V++ T+   + +  M++  R+L ++ +
Sbjct: 193 NNKVDGAKKLLVEMSNKGCCPNAVSYTTVISSMCEVGMVKEGRQLAERFE 242



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 130/323 (40%), Gaps = 68/323 (21%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G+C    ID A      M E G  PN+ TY  L+NG  +R SL           
Sbjct: 354 YNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLE---------- 403

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++++M   G  P+V  ++ ++    R  + + +   +  M ++   P+V T+++ +
Sbjct: 404 GAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFI 463

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCP---------------------------------- 147
           K LC  GR++ AE++  +M +   CP                                  
Sbjct: 464 KGLCDAGRLDWAEKVFRQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGV 523

Query: 148 --SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM-------AL 198
             S  TYN              A++L  +M  +G   P+  + N++I  +        A+
Sbjct: 524 EWSTSTYNTLLHGSCNAGLPGIALQLVGKMMVNGKS-PDEITMNMIILAYCKQGKAERAV 582

Query: 199 NRMDMV---REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP-Q 254
             +D+V   R  W         PD+ SYT +I GLC     ++    F  MI + ++P  
Sbjct: 583 QMLDLVSCGRRKWR--------PDVISYTNVIWGLCRSNCREDGVILFERMISERIIPIL 634

Query: 255 KVTFETLYRGLIQSDMLRTWRRL 277
           +   +   R  I +D+L  W R 
Sbjct: 635 RSVCQEAARMTIPNDVL--WLRF 655


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 134/283 (47%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI+  C+  R+  A   L  M+ RG  P+VVTYN+LL   C+           +  R
Sbjct: 166 HNPLIHALCERGRVADALVVLDGMLCRGCAPDVVTYNILLQAACK----------GRGYR 215

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D MR  G EP+  ++++++    R      + + LN +  +G  P    Y++V+
Sbjct: 216 QALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVL 275

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  CS  R  DA+E+L EMVR    P+  T N        RK     + LY +      C
Sbjct: 276 KGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTL-CRKGLLQKVTLYLEKMSKHGC 334

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+ +YN +I        +D   E+ ++++  G  PD+ +Y  ++ GLC   +W++A +
Sbjct: 335 TANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEE 394

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
             ++M +   LP   TF T+     Q  ++     + K++ E+
Sbjct: 395 LMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEK 437



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 138/327 (42%), Gaps = 45/327 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G+C I R   A+  L EM+     PN  T NV++N +CR+  L     +     
Sbjct: 271 YNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLY----- 325

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 ++M   G   +V +++ V+           +L+ L+ M+  G  P + TY++V+
Sbjct: 326 -----LEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVL 380

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LCS  R EDAEEL+ +M +N   P   T+N     +  +     A ++++QM E G C
Sbjct: 381 KGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKG-C 439

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWND------------------------------- 210
            PN  +Y+ +IG      +M+   E+ N+                               
Sbjct: 440 NPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTDKMYRVLTESLNKEDKIEEVVQV 499

Query: 211 ---VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              ++ SG+ P    Y  ++ GLC   K   A     +M+  G +P + T+  L  GL  
Sbjct: 500 VHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFY 559

Query: 268 SDMLRTWRRLKKKLDEESITFGSEFQN 294
               +  R L  +L    +   S  +N
Sbjct: 560 EGYSKEARELLSRLCSRDVLSNSLIKN 586



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 116/273 (42%), Gaps = 17/273 (6%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           +D A R +G        P+V   N L+  +CRR    P++        A +V +     G
Sbjct: 80  LDAALRLVGSSPR---PPDVPLANRLVRDLCRRG--RPAD--------AARVVEAC---G 123

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
            E    ++  ++  Y RA   + +   +  M       +   ++ ++  LC  GR+ DA 
Sbjct: 124 PEATAATYGALVDGYCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCERGRVADAL 183

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
            +L  M+  G  P   TYN   +     +    A++L   M+ +G C PN  +YN++I  
Sbjct: 184 VVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEG-CEPNNVTYNVIIDA 242

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                 +D  RE+ N +   G  P+  +Y  ++ G C  ++W +A +   EM+ +   P 
Sbjct: 243 MCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPN 302

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           + T   +   L +  +L+      +K+ +   T
Sbjct: 303 EATLNVIINTLCRKGLLQKVTLYLEKMSKHGCT 335


>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 859

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 146/293 (49%), Gaps = 14/293 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT++I  + +  +   +   L  M +  V P+++TYN ++N  C R  L     +E  +
Sbjct: 173 VYTAVINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINA-CARGGLD----WEGLL 227

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNF--MKEKGICPTVATYS 118
                +F EMR  GI+PDV +++ +L   + AH+      ++ F  M E GI P + TYS
Sbjct: 228 ----GLFAEMRHEGIQPDVITYNTLLG--ACAHRGLGDEAEMVFRTMNESGIVPDINTYS 281

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            +V+      R+E   ELL EM   G  P   +YN   + Y        AM ++RQM+  
Sbjct: 282 YLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAA 341

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G CV N  +Y++L+ ++    R D VR+I+ ++K S   PD  +Y +LI    E   +KE
Sbjct: 342 G-CVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKE 400

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSE 291
               F +M+E+ + P   T+E L     +  +    +++   ++E+ I   S+
Sbjct: 401 VVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSK 453



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 16/234 (6%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           +PN   Y +++  + R          E  +    +VFDEM   G+   V  ++ V++ Y 
Sbjct: 133 KPNEHIYTIMITLLGR----------EGLLDKCREVFDEMPSNGVARTVYVYTAVINAYG 182

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLG---EMVRNGVCP 147
           R  Q   SL+ LN MK++ + P++ TY++V+   C+ G + D E LLG   EM   G+ P
Sbjct: 183 RNGQFHASLELLNGMKQERVSPSILTYNTVINA-CARGGL-DWEGLLGLFAEMRHEGIQP 240

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
              TYN        R   + A  ++R M E G+ VP++++Y+ L+  F  LNR++ V E+
Sbjct: 241 DVITYNTLLGACAHRGLGDEAEMVFRTMNESGI-VPDINTYSYLVQTFGKLNRLEKVSEL 299

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
             +++  G  PD+ SY +L+    E    KEA   F +M   G +    T+  L
Sbjct: 300 LREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVL 353



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 123/285 (43%), Gaps = 26/285 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+  + K+NR++     L EM   G  P++ +YNVLL       S+  +    + ++
Sbjct: 280 YSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQ 339

Query: 62  NA-------------------------EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            A                           +F EM+V   +PD  +++I++ V+      +
Sbjct: 340 AAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFK 399

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
             +   + M E+ + P + TY  ++      G  EDA+++L  M   G+ PS++ Y    
Sbjct: 400 EVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVI 459

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           + +        A+ ++  M E G   P + +YN  I  F           I + +  SGL
Sbjct: 460 EAFGQAALYEEALVVFNTMNEVG-SNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGL 518

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
             D+ S+  +I    +  +++EA + +VEM +    P ++T E +
Sbjct: 519 KRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVV 563



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 107/224 (47%), Gaps = 11/224 (4%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           +M+E  VEPN+ TY  L+   C +  L+          +A+K+   M  +GI P   +++
Sbjct: 407 DMVEENVEPNMETYEGLIFA-CGKGGLY---------EDAKKILLHMNEKGIVPSSKAYT 456

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            V+  + +A   + +L   N M E G  PTV TY+S +      G  ++AE +L  M  +
Sbjct: 457 GVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNES 516

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+     ++N   K +R       A+K Y +M E   C PN  +  +++ ++ +   +D 
Sbjct: 517 GLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEM-EKANCEPNELTLEVVLSVYCSAGLVDE 575

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
             E + ++K SG+ P +  Y +++    +  +  +A     EMI
Sbjct: 576 SEEQFQEIKASGILPSVMCYCLMLALYAKNDRLNDAYNLIDEMI 619



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 104/255 (40%), Gaps = 14/255 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I  + +    + A      M E G  P V TYN  ++   R              +
Sbjct: 455 YTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGG----------LYK 504

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE +   M   G++ DV SF+ V+  + +  Q + ++     M++    P   T   V+
Sbjct: 505 EAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVL 564

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              CS G ++++EE   E+  +G+ PS   Y      Y      N A  L  +M    + 
Sbjct: 565 SVYCSAGLVDESEEQFQEIKASGILPSVMCYCLMLALYAKNDRLNDAYNLIDEMIT--MR 622

Query: 182 VPNMHSY--NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           V ++H     ++ G F   +   +V  +++ +   G G  +  Y  L+  L    + + A
Sbjct: 623 VSDIHQGIGQMIKGDFDDESNWQIVEYVFDKLNSEGCGLGMRFYNALLEALWWMFQRERA 682

Query: 240 CQYFVEMIEKGLLPQ 254
            +   E  ++GL P+
Sbjct: 683 ARVLNEASKRGLFPE 697



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 12/220 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S I+ + +      AE  L  M E G++ +V ++N    GV +  +     ++E+ + 
Sbjct: 490 YNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFN----GVIK--AFRQGGQYEEAV- 542

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K + EM     EP+  +  +VL VY  A     S ++   +K  GI P+V  Y  ++
Sbjct: 543 ---KSYVEMEKANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIKASGILPSVMCYCLML 599

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK-EYRGRKDANGAMKLYRQMKEDGL 180
                  R+ DA  L+ EM+   V    +      K ++    +      ++ ++  +G 
Sbjct: 600 ALYAKNDRLNDAYNLIDEMITMRVSDIHQGIGQMIKGDFDDESNWQIVEYVFDKLNSEG- 658

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
           C   M  YN L+     + + +    + N+    GL P+L
Sbjct: 659 CGLGMRFYNALLEALWWMFQRERAARVLNEASKRGLFPEL 698



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 57/114 (50%)

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
           S   +   FKE+  R D   +++L++ M+    C PN H Y I+I +      +D  RE+
Sbjct: 99  SLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMITLLGREGLLDKCREV 158

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           ++++  +G+   +  YT +I+      ++  + +    M ++ + P  +T+ T+
Sbjct: 159 FDEMPSNGVARTVYVYTAVINAYGRNGQFHASLELLNGMKQERVSPSILTYNTV 212


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 150/296 (50%), Gaps = 16/296 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI G+CK+ R+  A  ++ + I  G EP+ VT++  +NG+C+             + +A 
Sbjct: 272 LINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGH----------VDHAL 321

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           KV   M   G EPDV ++S V++      + + +   +N M + G  P   T+++++  L
Sbjct: 322 KVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVAL 381

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C+  ++E+A +L  E+   G+ P+  T+N          D + A++L+ +MK  G C P+
Sbjct: 382 CTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSG-CTPD 440

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
             +YNILI    +  ++    ++  +++ SG      +Y  +I GLC++++ +EA + F 
Sbjct: 441 EVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFD 500

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE-----SITFGSEFQNY 295
           +M   G+    +TF TL  GL  ++ +     L  ++  E     ++T+ S   +Y
Sbjct: 501 QMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHY 556



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 136/294 (46%), Gaps = 16/294 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+L+ G+ +   I+ A R    M E G  P  VT NVL+NG C+             + 
Sbjct: 234 FTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGR----------VG 283

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A     +    G EPD  +FS  ++   +      +L  L  M ++G  P V TYS+V+
Sbjct: 284 DALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVI 343

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLC+ G +E+A+ ++ +MV +G  P   T+N              A+ L R++   GL 
Sbjct: 344 NCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLS 403

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN++++NILI     +    +   ++ ++K SG  PD  +Y +LI  LC   K  +A  
Sbjct: 404 -PNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALD 462

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD-----EESITFGS 290
              EM   G     VT+ T+  GL +   +     +  ++D       +ITF +
Sbjct: 463 LLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNT 516



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 139/282 (49%), Gaps = 15/282 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI   C  N+++ A     E+  +G+ PNV T+N+L+N +C+    H + R      
Sbjct: 374 FNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVR------ 427

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F+EM+  G  PD  +++I++     + +   +LD L  M+  G   +  TY++++
Sbjct: 428 ----LFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTII 483

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   RIE+AEE+  +M   G+  +A T+N         +  + A +L  QM  +GL 
Sbjct: 484 DGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGL- 542

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +YN ++  +     +    +I   +  +G   D+ +Y  LI+GLC+ ++ + A +
Sbjct: 543 QPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALK 602

Query: 242 YFVEMIEKGLLPQKVTF----ETLYRGLIQSDMLRTWRRLKK 279
               M  KG+ P    +    ++L+RG    D L  +R + +
Sbjct: 603 LLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTE 644



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 135/302 (44%), Gaps = 28/302 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           +++ + G C+   +D A + LG M++ G EP+V TY+ ++N +C    L  ++       
Sbjct: 304 FSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMV 363

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  +  A  +  E+ V+G+ P+V +F+I+++   +   P 
Sbjct: 364 DSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPH 423

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           L++     MK  G  P   TY+ ++  LCS G++  A +LL EM  +G   S  TYN   
Sbjct: 424 LAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTII 483

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                R+    A +++ QM   G+   N  ++N LI       R+D   E+ + +   GL
Sbjct: 484 DGLCKRRRIEEAEEVFDQMDVTGIG-RNAITFNTLIDGLCNAERIDDAAELVDQMISEGL 542

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  +Y  ++   C++    +A      M   G     VT+ TL  GL ++   RT   
Sbjct: 543 QPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKAR--RTQAA 600

Query: 277 LK 278
           LK
Sbjct: 601 LK 602



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 126/271 (46%), Gaps = 14/271 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI   C   ++  A   L EM   G   + VTYN +++G+C+R          + I 
Sbjct: 444 YNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKR----------RRIE 493

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+VFD+M V GI  +  +F+ ++     A +   + + ++ M  +G+ P   TY+S++
Sbjct: 494 EAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSIL 553

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G I  A ++L  M  NG      TY          +    A+KL R M+  G+ 
Sbjct: 554 THYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGM- 612

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE-KQKWKEA 239
            P   +YN +I  +F   N  D +  ++ ++   G  PD  +Y ++  GLC      KEA
Sbjct: 613 KPTPKAYNPVIQSLFRGNNGRDAL-SLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEA 671

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
             + VEM + G +P+  +F  L  GL+   M
Sbjct: 672 FDFLVEMADNGFIPEFSSFRMLAEGLLNLGM 702



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 124/265 (46%), Gaps = 11/265 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L+    + ++I + E    EM  +G+EP+VVT+N +++ +CR           +  
Sbjct: 163 VYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCR----------ARQA 212

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R A  + +EM    + PD T+F+ ++  +      + +L     M E G  PT  T + +
Sbjct: 213 RTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVL 272

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  GR+ DA   + + + +G  P   T++ F          + A+K+   M ++G 
Sbjct: 273 INGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEG- 331

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P++++Y+ +I        ++  + I N +  SG  PD  ++  LI  LC + + +EA 
Sbjct: 332 CEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEAL 391

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
               E+  KGL P   TF  L   L
Sbjct: 392 DLARELTVKGLSPNVYTFNILINAL 416



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 120/282 (42%), Gaps = 12/282 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           +  S I  + ++   D A   +   ++  GV+ N   YN LL  +   +           
Sbjct: 127 LVQSFIGSYARLQLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSK---------- 176

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           I+  E  + EM  +GIEPDV +F+ V+    RA Q + ++  L  M    + P   T+++
Sbjct: 177 IKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTT 236

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +++     G IE A  L   M   G  P++ T N     Y        A+   +Q   DG
Sbjct: 237 LMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADG 296

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              P+  +++  +        +D   ++   +   G  PD+ +Y+ +I+ LC   + +EA
Sbjct: 297 F-EPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEA 355

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
                +M++ G LP   TF TL   L   + L     L ++L
Sbjct: 356 KGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLAREL 397



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 83/191 (43%), Gaps = 2/191 (1%)

Query: 95  PQLSLDKLN--FMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
           P+ +L  LN    ++ G+ P+   Y  +++ L + G  +  + L+GEM R G        
Sbjct: 69  PEAALRMLNSALARDDGLTPSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGLGLV 128

Query: 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
             F   Y   +  + A  L     +      N   YN L+ +    +++ ++   + ++ 
Sbjct: 129 QSFIGSYARLQLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMS 188

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
             G+ PD+ ++  +I  LC  ++ + A     EM    + P + TF TL  G ++   + 
Sbjct: 189 SQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIE 248

Query: 273 TWRRLKKKLDE 283
              RLK ++ E
Sbjct: 249 AALRLKARMSE 259


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 144/293 (49%), Gaps = 26/293 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           Y++LIYG+C   ++  A   L EM+ + + PNV TYN+L++ +C+               
Sbjct: 237 YSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVML 296

Query: 47  RASLHPSERFEKT----------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +A + P      T          ++ A+ VF+ M + G+ PDV +++I+++ + +     
Sbjct: 297 KACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVD 356

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+    M +K + P + TYSS++  LC  GRI    +L+ EM   G      TY+   
Sbjct: 357 EALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLI 416

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A+ L+ +MK+  +  PN+ ++ IL+       R+   +E++ D+   G 
Sbjct: 417 DGLCKNGHLDRAIALFNKMKDQEI-RPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGY 475

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
             ++ +Y ++I+G C++   +EA     +M + G +P   TFET+   L + D
Sbjct: 476 HLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKD 528



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 139/285 (48%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CKI     A + L ++  R  +PNV  Y+ +++ +C+           + + 
Sbjct: 167 YATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKY----------QLVS 216

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM V+GI  DV ++S +++ +    + + ++  LN M  K I P V TY+ +V
Sbjct: 217 EAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILV 276

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++++A+ +L  M++  V P   TY+     Y    +   A  ++  M   G+ 
Sbjct: 277 DALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGV- 335

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++H+Y ILI  F     +D    ++ ++    + P + +Y+ LI GLC+  +      
Sbjct: 336 TPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWD 395

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM ++G     +T+ +L  GL ++  L     L  K+ ++ I
Sbjct: 396 LIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEI 440



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 130/266 (48%), Gaps = 13/266 (4%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +LI G C   ++  A  F  +++ +G + N V+Y  L+NGVC+              R A
Sbjct: 134 TLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGD----------TRGA 183

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            K+  ++  R  +P+V  +S ++    +      +    + M  KGI   V TYS+++  
Sbjct: 184 IKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYG 243

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV- 182
            C  G++++A  LL EMV   + P+  TYN              A  +   M +   CV 
Sbjct: 244 FCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKA--CVK 301

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ +Y+ L+  +  +  +   + ++N +   G+ PD+ +YT+LI+G C+ +   EA   
Sbjct: 302 PDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNL 361

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQS 268
           F EM +K ++P  VT+ +L  GL +S
Sbjct: 362 FKEMHQKNMVPGIVTYSSLIDGLCKS 387



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 133/281 (47%), Gaps = 11/281 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY+++I   CK   +  A     EM  +G+  +VVTY+ L+ G C           E  +
Sbjct: 201 MYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFC----------IEGKL 250

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  + +EM ++ I P+V +++I++    +  + + +   L  M +  + P V TYS++
Sbjct: 251 KEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTL 310

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +        ++ A+ +   M   GV P   TY      +   K  + A+ L+++M +  +
Sbjct: 311 MDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNM 370

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VP + +Y+ LI       R+  V ++ ++++  G   D+ +Y+ LI GLC+      A 
Sbjct: 371 -VPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAI 429

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
             F +M ++ + P   TF  L  GL +   L+  + + + L
Sbjct: 430 ALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDL 470



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 90/179 (50%), Gaps = 10/179 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI G CK  RI      + EM +RG   +V+TY+ L++G+C+   L           
Sbjct: 377 YSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLD---------- 426

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F++M+ + I P++ +F+I+L    +  + + + +    +  KG    V TY+ ++
Sbjct: 427 RAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMI 486

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              C  G +E+A  +L +M  NG  P+A T+         + + + A KL RQM   GL
Sbjct: 487 NGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 1/219 (0%)

Query: 47  RASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMK 106
            +  H      + + +A   F+ M      P +  F+ +L  +++      ++   + ++
Sbjct: 27  HSHFHSQPPSIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLE 86

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
            KGI P + T + ++ C C  G+I     +L ++++ G  P   T N   K    +    
Sbjct: 87  LKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVK 146

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            A+  + ++   G  + N  SY  LI     +       ++   + G    P+++ Y+ +
Sbjct: 147 KALHFHDKLLAQGFQL-NQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTI 205

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           I  LC+ Q   EA   F EM  KG+    VT+ TL  G 
Sbjct: 206 IDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGF 244



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 1/157 (0%)

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
           S   ++DA      M+     P    +N     +   K  + A+ L  +++  G+  P++
Sbjct: 36  SIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGI-QPDL 94

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
            + NILI  F  + ++     +   +   G  PD  +   LI GLC K + K+A  +  +
Sbjct: 95  ITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDK 154

Query: 246 MIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           ++ +G    +V++ TL  G+ +    R   +L +K+D
Sbjct: 155 LLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKID 191


>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
 gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
          Length = 481

 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 139/294 (47%), Gaps = 35/294 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y +LI GWCKI R++ A +   EM+ +G V P+ V YN L+ G C R  L  + ++ + +
Sbjct: 186 YATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDM 245

Query: 61  -------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                     +A  V +EM+  G+ PDV +++I+++ Y +    
Sbjct: 246 VQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNE 305

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + +L+    M  KG+  T  TY+S++      G++++ + L    V+ G+ P    YN  
Sbjct: 306 KKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNAL 365

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +    D   A ++  +M++  +  P+  +YN LI  F  L R+D  R + +++   G
Sbjct: 366 INSHCAGGDMERAFEIMAEMEKKRI-PPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRG 424

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           + PDL        GLC+  +  +A     EM+ KG+ P   T+ +L  GL   D
Sbjct: 425 IQPDL--------GLCKNGQGDDAENLMKEMVGKGITPDDSTYISLIEGLTTVD 470



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 133/287 (46%), Gaps = 13/287 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y ++I G+C   R+  A   + EM ERG + P+  TY  L++G C+   +          
Sbjct: 150 YNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRME--------- 200

Query: 61  RNAEKVFDEMRVRG-IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
            +A KVFDEM  +G + P    ++ ++  Y    +  ++L     M ++G+  TVATY+ 
Sbjct: 201 -DAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNL 259

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +V  L   GR  DA  +L EM RNG+ P   TYN     Y    +   A++++ +M   G
Sbjct: 260 LVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKG 319

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +    + +Y  LI  F    ++     ++      G+ PD+  Y  LI+  C     + A
Sbjct: 320 VRATAV-TYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERA 378

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            +   EM +K + P  VT+ TL RG      L   R L  ++ +  I
Sbjct: 379 FEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGI 425



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 113/257 (43%), Gaps = 46/257 (17%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           E++ +   PN VTYN ++ G C R            ++ A +V  EMR RG         
Sbjct: 137 ELLRQMPRPNAVTYNTVIAGFCARGR----------VQAALEVMREMRERG--------- 177

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
                                    GI P   TY++++   C  GR+EDA ++  EM+  
Sbjct: 178 -------------------------GIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQ 212

Query: 144 G-VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202
           G V PSA  YN     Y  R   + A++    M + G+ +  + +YN+L+       R  
Sbjct: 213 GEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAM-TVATYNLLVHALFMDGRAS 271

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
               +  +++ +GL PD+ +Y +LI+G C++   K+A + F EM  KG+    VT+ +L 
Sbjct: 272 DAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLI 331

Query: 263 RGLIQSDMLRTWRRLKK 279
               +   ++   RL K
Sbjct: 332 YAFSRKGQVQETDRLFK 348


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 137/282 (48%), Gaps = 11/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI G     ++  A      MI+ G EPNVV YN L++G+C   SL           
Sbjct: 317 FTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLE---------- 366

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V D+M+  G  P+VT++SI++  ++++     + +  N M   G  P V TY+ +V
Sbjct: 367 EALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMV 426

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC     + A  L+ +M   G  P+  T+N F K   G      AMKL  +M+  G C
Sbjct: 427 DVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHG-C 485

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+ +YN L+     +N+ +    ++ +++   L P+L +Y  +++G        EA Q
Sbjct: 486 LPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQ 545

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            F + + +G  P  +T+ T+     +   ++   +L +++  
Sbjct: 546 LFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSS 587



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 135/282 (47%), Gaps = 22/282 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L+      N+  M       M + G+ PNV TYN+LL  +C+      ++R +   
Sbjct: 146 IYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCK------NDRVDA-- 197

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+F EM  +G  PD  +++ ++    +A +   + +     K     P+V  Y+++
Sbjct: 198 --AHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK-----PSVPVYNAL 250

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  +C  GRIE A +LLGEM+ NGV P+  +Y+C         +   A  L+ QM   G 
Sbjct: 251 IDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG- 309

Query: 181 CVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           C  N+H++  LI G FM   ++    ++W  +   G  P++ +Y  LIHGLC     +EA
Sbjct: 310 CDANIHTFTPLIKGCFMR-GKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEA 368

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDML----RTWRRL 277
            Q   +M   G LP   T+  L  G  +S  L     TW R+
Sbjct: 369 LQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRM 410



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 151/334 (45%), Gaps = 49/334 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G CK  RI++A + LGEM++ GV+PNVV+Y+ ++N +C   +          +
Sbjct: 246 VYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGN----------V 295

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F +M +RG + ++ +F+ ++       +   +LD    M + G  P V  Y+++
Sbjct: 296 ELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTL 355

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LCS G +E+A ++  +M R+G  P+  TY+     +    D  GA + + +M   G 
Sbjct: 356 IHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGC 415

Query: 181 ----------------------------------CVPNMHSYNILIGMFMALNRMDMVRE 206
                                             C PN  ++N  I       R++   +
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMK 475

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +   ++G G  P++ +Y  L+  L    K++EA   F E+  + L P  VT+ T+  G  
Sbjct: 476 LLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFS 535

Query: 267 QSDMLRTW-----RRLKKKLDEESITFGSEFQNY 295
           ++ M+        + L +    +SIT+ +    Y
Sbjct: 536 RAGMMGEALQLFGKALVRGTAPDSITYNTMIHAY 569



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 132/287 (45%), Gaps = 18/287 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+   CK +R+D A +   EM  +G  P+ VTY  +++ +C+               
Sbjct: 182 YNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCK--------------- 226

Query: 62  NAEKVFDEMRVRG-IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            A K+ D   + G  +P V  ++ ++    +  + ++++  L  M + G+ P V +YS +
Sbjct: 227 -AGKIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCI 285

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G +E A  L  +M   G   +  T+    K    R     A+ L++ M +DG 
Sbjct: 286 INSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDG- 344

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN+ +YN LI    +   ++   ++ + ++ SG  P++ +Y++LI G  +      A 
Sbjct: 345 CEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGAS 404

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           + +  MI  G  P  VT+  +   L ++ M      L +K+  E  T
Sbjct: 405 ETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCT 451



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 125/307 (40%), Gaps = 55/307 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G C    ++ A +   +M   G  PNV TY++L++G  +   L           
Sbjct: 352 YNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDL----------V 401

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK----GICPTVATY 117
            A + ++ M   G  P+V +++ ++ V  +        D+ N + EK    G  P   T+
Sbjct: 402 GASETWNRMISHGCRPNVVTYTCMVDVLCKNSM----FDQANSLVEKMTLEGCTPNTMTF 457

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           ++ +K LC  GR+E A +LL  M  +G  P+  TYN              A  L+++++ 
Sbjct: 458 NTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEA 517

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWND--VKGSG-------------------- 215
             L  PN+ +YN ++  F     M    +++    V+G+                     
Sbjct: 518 RNL-QPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVK 576

Query: 216 --------------LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
                           PD+ +YT LI G C     +EA  +  + I +G+ P   T+  L
Sbjct: 577 IAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNAL 636

Query: 262 YRGLIQS 268
            R    S
Sbjct: 637 VRCFFDS 643



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 86/169 (50%), Gaps = 1/169 (0%)

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
           T +TY  +++ L     ++  + +L +M  +G+    + + C    Y+    A  A+K++
Sbjct: 73  TASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMF 132

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
            ++ E G C P +  YN L+   ++ N+  M+  ++ ++K  GL P++ +Y +L+  LC+
Sbjct: 133 YRIGEFG-CKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCK 191

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
             +   A + FVEM  KG  P  VT+ T+   L ++  +   R L  + 
Sbjct: 192 NDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRF 240


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 130/264 (49%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I+G+ K  +I  A     EM+++G  P+VVT+N ++N +C+           + + 
Sbjct: 119 YNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCK----------ARAVD 168

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NAE +  +M   G+ P+  +++ ++H YS   + + +      M  +G+ P + +++S +
Sbjct: 169 NAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFM 228

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR ++A E+   M   G  P+  TY      Y         M  +  MK DG+ 
Sbjct: 229 DSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGI- 287

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V N   + ILI  +     MD    I ++++G GL PD+ +Y+ LI  LC   +  +A  
Sbjct: 288 VANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVD 347

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F +MI  G+ P  V + +L +G 
Sbjct: 348 KFNQMIGTGVQPNTVVYHSLIQGF 371



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 145/317 (45%), Gaps = 30/317 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA-SLHPSERF---- 56
           YTS+I+G+  + R + A +   EM  RG+ P++V++N  ++ +C+   S   +E F    
Sbjct: 189 YTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMA 248

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E    +    F+ M+  GI  +   F+I++  Y++     
Sbjct: 249 AKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMD 308

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++  L+ M+ +G+ P V TYS+++  LC  GR+ DA +   +M+  GV P+   Y+   
Sbjct: 309 EAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLI 368

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           + +    D   A +L  +M  +G+  PN+  +N ++       R+     I++ VK  G 
Sbjct: 369 QGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGE 428

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLR 272
             D+  +  LI G C   +  +A      MI  G+ P   T+ TL  G  +S    D L 
Sbjct: 429 RSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLN 488

Query: 273 TWRRLK-KKLDEESITF 288
            +R +  KK+   ++T+
Sbjct: 489 LFREMSDKKIKPTTVTY 505



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 136/283 (48%), Gaps = 16/283 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++ G C+  R ++   F G ++  G++ +    N +L  +C       ++R +  ++
Sbjct: 11  YGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLC------CTKRTDDAVK 64

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFM-KEKGIC-PTVATYSS 119
              +   E+   G  PD  S++IVL      ++ Q +LD L  M KE+G+C P V TY++
Sbjct: 65  VLLRRMTEL---GCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNT 121

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           V+      G+I  A  L  EM++ G  P   T+N         +  + A  L RQM ++G
Sbjct: 122 VIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNG 181

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  PN  +Y  +I  +  L R +   +++ ++ G GL PD+ S+   +  LC+  + KEA
Sbjct: 182 V-PPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEA 240

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLK 278
            + F  M  KG  P  VT+  L  G       +DM+  +  +K
Sbjct: 241 AEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMK 283



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 130/292 (44%), Gaps = 25/292 (8%)

Query: 10  CKINRIDMAER-FLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           C   R D A +  L  M E G  P+  +Y ++L  +C                 +++  D
Sbjct: 54  CCTKRTDDAVKVLLRRMTELGCVPDAFSYAIVLKRLCDD-------------NRSQQALD 100

Query: 69  EMRVRGIE-----PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            +R+   E     PDV +++ V+H + +  +   + +  + M ++G  P V T++S++  
Sbjct: 101 LLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINA 160

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC    +++AE LL +MV NGV P+  TY      Y        A K++R+M   GL +P
Sbjct: 161 LCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGL-IP 219

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++ S+N  +       R     EI+  +   G  P++ +Y +L+HG   +  + +   +F
Sbjct: 220 DIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFF 279

Query: 244 VEMIEKGLLPQKVTFETLY-----RGLIQSDMLRTWRRLKKKLDEESITFGS 290
             M   G++   + F  L      RG++   ML       + L  +  T+ +
Sbjct: 280 NTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYST 331



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 137/316 (43%), Gaps = 35/316 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGV-EPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           +Y SLI G+C    +  A+  + EM+  G+  PN+  +N +++ +C+   +  +      
Sbjct: 363 VYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDL 422

Query: 60  IRN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ 94
           +++                         A  V D M   GI PD  +++ +++ Y ++ +
Sbjct: 423 VKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGR 482

Query: 95  PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
               L+    M +K I PT  TY+ ++  L   GR   A+++L EM+  G   S  TYN 
Sbjct: 483 IDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNI 542

Query: 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVP----NMHSYNILIGMFMALNRMDMVREIWND 210
             K        + A+ ++++     LC      N+ + N +I     + R +  +++++ 
Sbjct: 543 ILKGLCRNNCTDEAIVMFQK-----LCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSA 597

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           +  SGL P+  +Y ++I  L ++   +EA   F  M + G  P         R L++   
Sbjct: 598 ISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGCAPCSRLLNDTIRTLLEKGE 657

Query: 271 LRTWRRLKKKLDEESI 286
           +        K+D +SI
Sbjct: 658 IVKAGNYMSKVDGKSI 673



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 98/195 (50%), Gaps = 2/195 (1%)

Query: 72  VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIE 131
           +R   P + ++ +V++   RA +P+L L     +   G+       ++V+KCLC   R +
Sbjct: 1   MRVAPPTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTD 60

Query: 132 DA-EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM-KEDGLCVPNMHSYN 189
           DA + LL  M   G  P A +Y    K       +  A+ L R M KE+G+C P++ +YN
Sbjct: 61  DAVKVLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYN 120

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            +I  F    ++     +++++   G  PD+ ++  +I+ LC+ +    A     +M++ 
Sbjct: 121 TVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDN 180

Query: 250 GLLPQKVTFETLYRG 264
           G+ P KVT+ ++  G
Sbjct: 181 GVPPNKVTYTSMIHG 195



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 124/291 (42%), Gaps = 27/291 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKT 59
           ++T LI  + K   +D A   L EM  +G+ P+V TY+ L++ +CR   L  + ++F + 
Sbjct: 293 VFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQM 352

Query: 60  IRN------------------------AEKVFDEMRVRGI-EPDVTSFSIVLHVYSRAHQ 94
           I                          A+++  EM   GI  P++  F+ ++H   +  +
Sbjct: 353 IGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGR 412

Query: 95  PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
              +    + +K+ G    +  +++++   C  G +  A  +L  M+  G+ P   TYN 
Sbjct: 413 VMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNT 472

Query: 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
               Y      +  + L+R+M +  +  P   +YNI++       R    +++ +++ G 
Sbjct: 473 LVNGYFKSGRIDDGLNLFREMSDKKI-KPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGC 531

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           G    L +Y +++ GLC      EA   F ++    +     T  T+   +
Sbjct: 532 GTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSM 582


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 149/299 (49%), Gaps = 46/299 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMI----------------------------------- 26
           Y +L+YG+C++  ++MA R   +MI                                   
Sbjct: 271 YRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLG 330

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
           + G+ PNV  YN L++ +C+      +ERF+    +A+++F EM  RG+EP+  +++I++
Sbjct: 331 DLGMVPNVFAYNALIDKLCK------NERFD----DADRLFKEMAGRGLEPNEVTYAILI 380

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
           H   +    + +L   + M++KGI  TV  Y+S++   C  G ++ A  LL  MV+ G+ 
Sbjct: 381 HALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLT 440

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+A +Y+          D +  M+L+R+M E G+   N +++  LI  F    +MD    
Sbjct: 441 PTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNN-YTFTALINGFCKDKKMDEAAR 499

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +++ +  S + P+  ++ ++I G C     ++A Q + +M+E GL P   T+ +L  GL
Sbjct: 500 LFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGL 558



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 136/322 (42%), Gaps = 62/322 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +I G+C +  I  A +   +M+E G++P+  TY  L++G+C  + +  +  F   + 
Sbjct: 516 FNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLE 575

Query: 62  NAEKV-------------------------FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           N+  V                         +DEM VRG++ D+ SF+I+++   + H  +
Sbjct: 576 NSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKE 635

Query: 97  LSLDKLNFMKEKGI-----------------------------------CPTVATYSSVV 121
            S      MKE+G+                                    P   T++ ++
Sbjct: 636 KSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLI 695

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +  AE L  EM+   V P+  TYNCF   +    D   A  L+  M +  L 
Sbjct: 696 NNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLA 755

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++ S+NILI       ++    ++ + +  SG  PD  SY+ +IH LC+     +A +
Sbjct: 756 --SIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFE 813

Query: 242 YFVEMIEKGLLPQKVTFETLYR 263
            + EM+ KGL P  V +    R
Sbjct: 814 LWNEMLYKGLKPDVVAYNIFIR 835



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 129/249 (51%), Gaps = 19/249 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI   CK  R D A+R   EM  RG+EPN VTY +L++ +C+R            I 
Sbjct: 341 YNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRG----------MIE 390

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK----LNFMKEKGICPTVATY 117
           +A  +FD+MR +GI+  V  ++ +++ Y +    Q SLD+    L+ M ++G+ PT A+Y
Sbjct: 391 DALCLFDKMRDKGIKVTVYPYNSLINGYCK----QGSLDRARGLLSGMVKEGLTPTAASY 446

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           S ++  LC  G +    EL  EM   G+  +  T+      +   K  + A +L+ +M +
Sbjct: 447 SPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMID 506

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
             + +PN  ++N++I  +  +  +    ++++ +   GL PD  +Y  LI GLC      
Sbjct: 507 SNV-IPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVS 565

Query: 238 EACQYFVEM 246
           +A ++  ++
Sbjct: 566 KANEFVADL 574



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 122/285 (42%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+YG CK  R+  A      M+  GV  + VTY  L+ G CR       E  E  +R
Sbjct: 236 YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRM------EELEMALR 289

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +  +M   G  P   + S ++    +    + +      + + G+ P V  Y++++
Sbjct: 290 ----ITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALI 345

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R +DA+ L  EM   G+ P+  TY         R     A+ L+ +M++ G+ 
Sbjct: 346 DKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIK 405

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V  ++ YN LI  +     +D  R + + +   GL P   SY+ LI GLC         +
Sbjct: 406 V-TVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCME 464

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM E+G+     TF  L  G  +   +    RL  K+ + ++
Sbjct: 465 LHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNV 509



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 125/285 (43%), Gaps = 11/285 (3%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           + +++   KI +  +A     +M++ GV  +   Y   +   C            + +  
Sbjct: 167 SQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCE----------SRNLDG 216

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  +   M   G++     ++++++   +  + Q +++  N M   G+     TY ++V 
Sbjct: 217 ARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVY 276

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C    +E A  +  +M+R G  PS    +    E R ++    A  L  ++ + G+ V
Sbjct: 277 GFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM-V 335

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN+ +YN LI       R D    ++ ++ G GL P+  +Y +LIH LC++   ++A   
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           F +M +KG+      + +L  G  +   L   R L   + +E +T
Sbjct: 396 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLT 440



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 140/312 (44%), Gaps = 40/312 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHP--------S 53
           Y SLI G+CK   +D A   L  M++ G+ P   +Y+ L+ G+CR   L          +
Sbjct: 411 YNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMA 470

Query: 54  ERF-----------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           ER                  +K +  A ++FD+M    + P+  +F++++  Y      +
Sbjct: 471 ERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIR 530

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM-----VRNGVCPSAET 151
            +    + M E G+ P   TY S++  LC    +  A E + ++     V N    +A  
Sbjct: 531 KAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALL 590

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE--IWN 209
           Y  FF+E R  +       L+ +M   G+ + ++ S+ I++  + AL + D  +   ++ 
Sbjct: 591 YG-FFREGRFTE----TYHLWDEMAVRGVKL-DLVSFTIIV--YAALKQHDKEKSCVLFR 642

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           ++K  G+ PD   YT +I  L +++   +A   + +M+  G  P  VT   L   L +S 
Sbjct: 643 EMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSG 702

Query: 270 MLRTWRRLKKKL 281
            L +   L K++
Sbjct: 703 YLGSAELLCKEM 714



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 12/191 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI   CK   +  AE    EM+   V PN  TYN  L+       +  ++     + 
Sbjct: 691 HTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAM- 749

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                     ++G    + SF+I++    +A + Q ++D ++ + E G  P   +YS+++
Sbjct: 750 ----------LQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTII 799

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G I  A EL  EM+  G+ P    YN F +      +++ A+ +Y  M   G+ 
Sbjct: 800 HELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGV- 858

Query: 182 VPNMHSYNILI 192
            PN  +Y  L+
Sbjct: 859 QPNWDTYRALL 869



 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 18/201 (8%)

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
           L      GI     T S ++  L    +   A +L  +M+++GV      Y    + Y  
Sbjct: 151 LGLSLSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCE 210

Query: 162 RKDANGAMKLYRQMKEDGL---CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218
            ++ +GA  L  +M+ +G+    VP    YN+L+       R+    E+ N +   G+  
Sbjct: 211 SRNLDGARGLVVRMESEGVKASAVP----YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTA 266

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
           D  +Y  L++G C  ++ + A +   +MI  G +P +     +       D LR     K
Sbjct: 267 DEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMI------DELR-----K 315

Query: 279 KKLDEESITFGSEFQNYHFKP 299
           K+L EE+ +   +  +    P
Sbjct: 316 KELVEEAFSLACKLGDLGMVP 336


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 153/311 (49%), Gaps = 26/311 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y S I G CK  R++ A   + +M+E G+ PN VTYN L++G C +  L  +  +     
Sbjct: 289 YNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMI 348

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  + +A+ +  EMR +G+ PD  + +I+++ Y R    +
Sbjct: 349 SKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAK 408

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L+ M  KGI PT+ TY+S++  L    R+++A+ L  ++ + G+ P    +N   
Sbjct: 409 RAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALI 468

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +    + + A +L ++M ++   +P+  +YN L+  +    +++  R++ +++K  G+
Sbjct: 469 DGHCANGNIDRAFQLLKEM-DNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGI 527

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD  SY  LI G  ++   K+A +   EM+  G  P  +T+  L +GL ++        
Sbjct: 528 KPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEE 587

Query: 277 LKKKLDEESIT 287
           L K++  + IT
Sbjct: 588 LLKEMVSKGIT 598



 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 149/299 (49%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +I   CK  ++  A+ F+G M   GV+PNVVTYN +++G C R       +F++   
Sbjct: 219 FNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRG------KFQR--- 269

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F  M+ +G+EPD  +++  +    +  + + +   +  M E G+ P   TY++++
Sbjct: 270 -ARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALI 328

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C+ G ++ A     EM+  G+  S  TYN F            A  + ++M+E G+ 
Sbjct: 329 DGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGM- 387

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+  ++NILI  +           + +++ G G+ P L +YT LI+ L ++ + KEA  
Sbjct: 388 MPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADA 447

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE-----ESITFGSEFQNY 295
            F ++ ++GLLP  + F  L  G   +  +    +L K++D      + IT+ +  Q Y
Sbjct: 448 LFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGY 506



 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 138/278 (49%), Gaps = 11/278 (3%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           + K+NR  MA     EM    +  ++ T+N+++N +C+          E  ++ A++   
Sbjct: 191 FLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCK----------EGKLKKAKEFIG 240

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
            M   G++P+V +++ ++H +    + Q +      MK+KG+ P   TY+S +  LC  G
Sbjct: 241 HMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEG 300

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           R+E+A  L+ +M+  G+ P+A TYN     Y  + D + A     +M   G+ + ++ +Y
Sbjct: 301 RLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGI-MASLVTY 359

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N+ I       RM     +  +++  G+ PD  ++ +LI+G C     K A     EM+ 
Sbjct: 360 NLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVG 419

Query: 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           KG+ P  VT+ +L   L + + ++    L  K+ +E +
Sbjct: 420 KGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGL 457



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 129/282 (45%), Gaps = 14/282 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I+G C   +   A      M ++G+EP+  TYN  ++G+C+          E  + 
Sbjct: 254 YNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCK----------EGRLE 303

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +M   G+ P+  +++ ++  Y        +    + M  KGI  ++ TY+  +
Sbjct: 304 EASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFI 363

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+ DA+ ++ EM   G+ P A T+N     Y    DA  A  L  +M   G+ 
Sbjct: 364 HALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGI- 422

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +Y  LI +    NRM     +++ ++  GL PD+  +  LI G C       A Q
Sbjct: 423 QPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQ 482

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
              EM    +LP ++T+ TL +G  +   +   R+L   LDE
Sbjct: 483 LLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQL---LDE 521



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 10/167 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ +LI G C    ID A + L EM    V P+ +TYN L+ G CR          E  +
Sbjct: 463 VFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCR----------EGKV 512

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++ DEM+ RGI+PD  S++ ++  YS+    + +    + M   G  PT+ TY+++
Sbjct: 513 EEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNAL 572

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG 167
           ++ LC     E AEELL EMV  G+ P   TY    +      D  G
Sbjct: 573 IQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAMETVDDLEG 619



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 90/202 (44%), Gaps = 4/202 (1%)

Query: 66  VFDEMRVRGIEPDVTS---FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           +FDE+ +     D  +   F +++  Y    +P  +L+    +KEKG  P + T + ++ 
Sbjct: 130 IFDELALARDRVDAKTTLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLS 189

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
                 R + A  L  EM R  +  S  T+N              A +    M+  G+  
Sbjct: 190 LFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGV-K 248

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN+ +YN +I       +    R I+  +K  GL PD  +Y   I GLC++ + +EA   
Sbjct: 249 PNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGL 308

Query: 243 FVEMIEKGLLPQKVTFETLYRG 264
             +M+E GL+P  VT+  L  G
Sbjct: 309 ICKMLEGGLVPNAVTYNALIDG 330



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 110/240 (45%), Gaps = 1/240 (0%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A + F  ++ +G  P++ + + +L ++ + ++ Q++      M    I  ++ T++ ++ 
Sbjct: 165 ALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMIN 224

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  G+++ A+E +G M   GV P+  TYN     +  R     A  +++ MK+ GL  
Sbjct: 225 VLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGL-E 283

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+ ++YN  I       R++    +   +   GL P+  +Y  LI G C K    +A  Y
Sbjct: 284 PDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAY 343

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR 302
             EMI KG++   VT+      L     +     + K++ E+ +   +   N     Y R
Sbjct: 344 RDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCR 403



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 74/134 (55%), Gaps = 10/134 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G+C+  +++ A + L EM  RG++P+ ++YN L++G  +R  +          +
Sbjct: 499 YNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDM----------K 548

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A +V DEM   G +P + +++ ++    +  + + + + L  M  KGI P  +TY S++
Sbjct: 549 DAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSII 608

Query: 122 KCLCSCGRIEDAEE 135
           + + +   +E  ++
Sbjct: 609 EAMETVDDLEGNDD 622


>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
          Length = 447

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 125/234 (53%), Gaps = 11/234 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++ GWC I R       L EM+ERG+ PN+ TYN +L G  R             IR
Sbjct: 192 YNVILNGWCLIKRTPKTLEVLKEMVERGINPNLTTYNTMLKGFFRAGQ----------IR 241

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A + F EM+ R  E DV +++ V+H +  A + + + +  + M  +G+ P+VATY++++
Sbjct: 242 HAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMI 301

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC    +E+A  +  EMVR G  P+  TYN   +      + +   +L ++M+ +G C
Sbjct: 302 QVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEG-C 360

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            PN  +YN++I  +   + ++    ++  +      P+LD+Y +LI G+  +++
Sbjct: 361 EPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKR 414



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 128/266 (48%), Gaps = 14/266 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +++   CK  R++ A      +  R    + VTYNV+LNG C        +R  KT+ 
Sbjct: 158 FNTILDVLCKSKRVEKAYELFRALRGR-FSVDTVTYNVILNGWCL------IKRTPKTL- 209

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +V  EM  RGI P++T+++ +L  + RA Q + + +    MK++     V TY++VV
Sbjct: 210 ---EVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVV 266

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G I+ A  +  EM+R GV PS  TYN   +    + +   A+ ++ +M   G  
Sbjct: 267 HGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGY- 325

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            PN+ +YN+LI G+F A        E+   ++  G  P+  +Y M+I    E  + ++A 
Sbjct: 326 EPNVTTYNVLIRGLFHA-GEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKAL 384

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLI 266
             F +M     LP   T+  L  G+ 
Sbjct: 385 GLFEKMGSGDCLPNLDTYNILISGMF 410



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 115/287 (40%), Gaps = 46/287 (16%)

Query: 44  VCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN 103
           +  R  LHP+            +   MR   I P   +F+IV   Y+ A +P  ++    
Sbjct: 94  IAARLHLHPT---------VWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFL 144

Query: 104 FMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL--------------------------- 136
            M E G    +A++++++  LC   R+E A EL                           
Sbjct: 145 NMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKR 204

Query: 137 -------LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
                  L EMV  G+ P+  TYN   K +        A + + +MK+   C  ++ +Y 
Sbjct: 205 TPKTLEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRD-CEIDVVTYT 263

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            ++  F     +   R +++++   G+ P + +Y  +I  LC+K   + A   F EM+ +
Sbjct: 264 TVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRR 323

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYH 296
           G  P   T+  L RGL  +        L ++++ E       FQ Y+
Sbjct: 324 GYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCE--PNFQTYN 368



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 10/131 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I   CK + ++ A     EM+ RG EPNV TYNVL+ G+      H  E       
Sbjct: 297 YNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGL-----FHAGE-----FS 346

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             E++   M   G EP+  ++++++  YS   + + +L     M      P + TY+ ++
Sbjct: 347 RGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILI 406

Query: 122 KCLCSCGRIED 132
             +    R ED
Sbjct: 407 SGMFVRKRSED 417


>gi|334183891|ref|NP_177483.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806278|sp|Q9FX35.2|PP117_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g73400, mitochondrial; Flags: Precursor
 gi|332197336|gb|AEE35457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 568

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 128/259 (49%), Gaps = 15/259 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L +GWC++     A + L EMIE G +P   TY   ++  C+             + 
Sbjct: 271 FNVLFFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAG----------MVD 320

Query: 62  NAEKVFDEMRVRGIE---PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A  +FD M  +G     P   +F++++   ++  + +   + +  M   G  P V+TY 
Sbjct: 321 EAADLFDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYK 380

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            V++ +C   ++++A + L EM   G  P   TYNCF +     +  + A+KLY +M E 
Sbjct: 381 DVIEGMCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVE- 439

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
             C P++ +YN+LI MF  ++  D     W ++       D+++Y  +I+GL +  + KE
Sbjct: 440 SRCAPSVQTYNMLISMFFEMDDPDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKE 499

Query: 239 ACQYFVEMIEKGL-LPQKV 256
           AC    E++ KGL LP +V
Sbjct: 500 ACFLLEEVVNKGLKLPYRV 518



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 118/263 (44%), Gaps = 21/263 (7%)

Query: 26  IERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85
           I    +P +  +N+LL+ +C+             ++  E +   MR R ++PD  +F+++
Sbjct: 226 IRVKTQPEINAFNMLLDALCKCG----------LVKEGEALLRRMRHR-VKPDANTFNVL 274

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
              + R   P+ ++  L  M E G  P   TY + +   C  G +++A +L   M+  G 
Sbjct: 275 FFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGS 334

Query: 146 C---PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY-NILIGMFMALNRM 201
               P+A+T+            A    +L  +M   G C+P++ +Y +++ GM MA  ++
Sbjct: 335 AVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTG-CLPDVSTYKDVIEGMCMA-EKV 392

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           D   +  +++   G  PD+ +Y   +  LCE +K  EA + +  M+E    P   T+  L
Sbjct: 393 DEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNML 452

Query: 262 YRGLIQSD----MLRTWRRLKKK 280
                + D       TW  + K+
Sbjct: 453 ISMFFEMDDPDGAFNTWTEMDKR 475



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 76/176 (43%), Gaps = 10/176 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G C   ++D A +FL EM  +G  P++VTYN  L  +C            +   
Sbjct: 379 YKDVIEGMCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCE----------NRKTD 428

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K++  M      P V ++++++ ++     P  + +    M ++     V TY +++
Sbjct: 429 EALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTWTEMDKRDCVQDVETYCAMI 488

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
             L  C R ++A  LL E+V  G+      ++ F        +     K+   MK+
Sbjct: 489 NGLFDCHRAKEACFLLEEVVNKGLKLPYRVFDSFLMRLSEVGNLKAIHKVSEHMKK 544


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 146/303 (48%), Gaps = 46/303 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT +I G+C+   +  A R   EM+  G  P+VVTYN LLNG+C+          E+ +
Sbjct: 272 IYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK----------ERRL 321

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVY------SRAHQ-------------------- 94
            +AE + +EMR RG+ PD+ +F+ ++H Y       +A Q                    
Sbjct: 322 LDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTL 381

Query: 95  -----PQLSLDKLNF----MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
                 Q  LDK N     M  + I P   TYS ++   C  G++EDA   L EM+  G+
Sbjct: 382 IDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGI 441

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P+  TYN   K Y    + +   K  ++M  + +  P++ +YN LI  ++  ++M    
Sbjct: 442 LPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVS-PDLITYNTLIHGYIKEDKMHDAF 500

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           ++ N ++   + PD+ +Y MLI+G       +EA   F +M  KG+ P + T+ ++  G 
Sbjct: 501 KLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGH 560

Query: 266 IQS 268
           + +
Sbjct: 561 VTA 563



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 148/299 (49%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI G+C++  I+ A +   EM  RG++P++V+++ L+    RR  +           
Sbjct: 203 FTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMD---------- 252

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A     EMR  G+ PD   +++V+  + RA     +L   + M   G  P V TY++++
Sbjct: 253 HAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLL 312

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R+ DAE LL EM   GV P   T+      Y      + A++L+  M    L 
Sbjct: 313 NGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRL- 371

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN LI        +D   ++W+D+    + P+  +Y++LI   CEK + ++A  
Sbjct: 372 RPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFG 431

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL-----DEESITFGSEFQNY 295
           +  EMI KG+LP  +T+ ++ +G  +S  +   ++  +K+       + IT+ +    Y
Sbjct: 432 FLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGY 490



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 128/249 (51%), Gaps = 11/249 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI+G+C   ++D A +    M+ + + P++VTYN L++G+CR+  L           
Sbjct: 343 FTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLD---------- 392

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++D+M  R I P+  ++SI++  +    Q + +   L+ M  KGI P + TY+S++
Sbjct: 393 KANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSII 452

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C  G +   ++ L +M+ N V P   TYN     Y      + A KL   M+++ + 
Sbjct: 453 KGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKV- 511

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN+LI  F     +     I+  +   G+ PD  +Y  +I+G       KEA Q
Sbjct: 512 QPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQ 571

Query: 242 YFVEMIEKG 250
              EM+++G
Sbjct: 572 LHDEMLQRG 580



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 122/270 (45%), Gaps = 47/270 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S++ G C+    D A     EM + GV P+V ++ +L+ G CR             I 
Sbjct: 168 YNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGE----------IE 217

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K++ EMR RGI+PD+ SFS ++ +++R  +   ++  L  M+  G+ P    Y+ V+
Sbjct: 218 EALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVI 277

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + DA  +  EMV  G  P   TYN            NG  K  R +  +GL 
Sbjct: 278 GGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLL---------NGLCKERRLLDAEGL- 327

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
                                      N+++  G+ PDL ++T LIHG C + K  +A Q
Sbjct: 328 --------------------------LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQ 361

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLI-QSDM 270
            F  M+ + L P  VT+ TL  G+  Q D+
Sbjct: 362 LFDTMLNQRLRPDIVTYNTLIDGMCRQGDL 391



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 129/260 (49%), Gaps = 11/260 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +++ +CK    D  +  + EM +R V P+VVT+NV+++   R                A 
Sbjct: 101 MVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEA----------AM 150

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            + D M  +G++P + +++ VL    R+     + +    M + G+ P V +++ ++   
Sbjct: 151 ALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGF 210

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G IE+A ++  EM   G+ P   +++C    +  R   + AM   R+M+  GL VP+
Sbjct: 211 CRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGL-VPD 269

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
              Y ++IG F     M     + +++ G G  PD+ +Y  L++GLC++++  +A     
Sbjct: 270 GVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLN 329

Query: 245 EMIEKGLLPQKVTFETLYRG 264
           EM E+G+ P   TF TL  G
Sbjct: 330 EMRERGVPPDLCTFTTLIHG 349



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 130/270 (48%), Gaps = 16/270 (5%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           E N  T N++++  C+      +  F+K     + V  EM  R + PDV + ++++    
Sbjct: 92  EVNTYTLNIMVHNYCK------ALEFDKV----DAVISEMEKRCVFPDVVTHNVMVDARF 141

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
           RA   + ++  ++ M  KG+ P + TY+SV+K LC  G  + A E+  EM   GV P   
Sbjct: 142 RAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVR 201

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           ++      +    +   A+K+Y++M+  G+  P++ S++ LIG+F    +MD       +
Sbjct: 202 SFTILIGGFCRVGEIEEALKIYKEMRHRGI-KPDLVSFSCLIGLFARRGKMDHAMAYLRE 260

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           ++  GL PD   YTM+I G C      +A +   EM+  G LP  VT+ TL  GL +   
Sbjct: 261 MRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERR 320

Query: 271 LRTWRRLKKKLDEESI-----TFGSEFQNY 295
           L     L  ++ E  +     TF +    Y
Sbjct: 321 LLDAEGLLNEMRERGVPPDLCTFTTLIHGY 350



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 1/171 (0%)

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
           RA  P L+ D    +          T + +V   C     +  + ++ EM +  V P   
Sbjct: 72  RAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVV 131

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           T+N          DA  AM L   M   GL  P + +YN ++         D   E++ +
Sbjct: 132 THNVMVDARFRAGDAEAAMALVDSMVSKGL-KPGIVTYNSVLKGLCRSGMWDKAWEVFKE 190

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   G+ PD+ S+T+LI G C   + +EA + + EM  +G+ P  V+F  L
Sbjct: 191 MDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCL 241


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 130/267 (48%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G+ K+ R+D    F  EM +   EP+V+TYN L+N  C+   L     F     
Sbjct: 300 YNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEF----- 354

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                + EM+  G++P+V S+S ++  + +    Q ++     M+  G+ P   TY+S++
Sbjct: 355 -----YREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLI 409

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + DA  L  EM++ GV  +  TY          +    A +L+ +M   G+ 
Sbjct: 410 DANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGV- 468

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+ SYN LI  F+    MD   E+ N++KG G+ PDL  Y   I GLC  +K + A  
Sbjct: 469 IPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKV 528

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
              EM E G+    + + TL     +S
Sbjct: 529 VMNEMKECGIKANSLIYTTLMDAYFKS 555



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 134/265 (50%), Gaps = 11/265 (4%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
            L++ + K+ + D  +RF  +MI  G  P V TYN++++ +C+          E  +  A
Sbjct: 232 GLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCK----------EGDVEAA 281

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             +F+EM+ RG+ PD  +++ ++  + +  +   ++     MK+    P V TY++++ C
Sbjct: 282 RGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINC 341

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C  G++    E   EM  NG+ P+  +Y+     +        A+K Y  M+  GL VP
Sbjct: 342 FCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL-VP 400

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N ++Y  LI     +  +     + N++   G+  ++ +YT LI GLC+ ++ KEA + F
Sbjct: 401 NEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELF 460

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQS 268
            +M   G++P   ++  L  G +++
Sbjct: 461 GKMDTAGVIPNLASYNALIHGFVKA 485



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 145/286 (50%), Gaps = 18/286 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI   CKI  +  A R   EM++ GVE NVVTY  L++G+C       +ER    ++
Sbjct: 405 YTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLC------DAER----MK 454

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE++F +M   G+ P++ S++ ++H + +A     +L+ LN +K +GI P +  Y + +
Sbjct: 455 EAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFI 514

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LCS  +IE A+ ++ EM   G+  ++  Y      Y    +    + L  +MKE  + 
Sbjct: 515 WGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIE 574

Query: 182 VPNMHSYNILIGMF----MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
           V  + ++ +LI       +    +D    I ND    GL  +   +T +I GLC+  + +
Sbjct: 575 V-TVVTFCVLIDGLCKNKLVSKAVDYFNRISNDF---GLQANAAIFTAMIDGLCKDNQVE 630

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            A   F +M++KGL+P +  + +L  G  +   +     L+ K+ E
Sbjct: 631 AATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAE 676



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 132/270 (48%), Gaps = 11/270 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI  +CK  ++ +   F  EM   G++PNVV+Y+ L++  C+          E  ++
Sbjct: 335 YNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCK----------EGMMQ 384

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K + +MR  G+ P+  +++ ++    +      +    N M + G+   V TY++++
Sbjct: 385 QAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALI 444

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R+++AEEL G+M   GV P+  +YN     +   K+ + A++L  ++K  G+ 
Sbjct: 445 DGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGI- 503

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  Y   I    +L +++  + + N++K  G+  +   YT L+    +     E   
Sbjct: 504 KPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLH 563

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              EM E  +    VTF  L  GL ++ ++
Sbjct: 564 LLDEMKELDIEVTVVTFCVLIDGLCKNKLV 593



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 7/205 (3%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE---KGICPTVAT 116
           +  A + F +M+   + P   S + +LH +++  +     D   F K+    G  PTV T
Sbjct: 208 LEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTD---DVKRFFKDMIGAGARPTVFT 264

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+ ++ C+C  G +E A  L  EM   G+ P   TYN     +      +  +  + +MK
Sbjct: 265 YNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMK 324

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
            D  C P++ +YN LI  F    ++ +  E + ++KG+GL P++ SY+ L+   C++   
Sbjct: 325 -DMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMM 383

Query: 237 KEACQYFVEMIEKGLLPQKVTFETL 261
           ++A +++V+M   GL+P + T+ +L
Sbjct: 384 QQAIKFYVDMRRVGLVPNEYTYTSL 408



 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 123/257 (47%), Gaps = 14/257 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G+ K   +D A   L E+  RG++P+++ Y   + G+C           EK I 
Sbjct: 475 YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCS---------LEK-IE 524

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ V +EM+  GI+ +   ++ ++  Y ++  P   L  L+ MKE  I  TV T+  ++
Sbjct: 525 AAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLI 584

Query: 122 KCLCSCGRIEDAEELLGEMVRN-GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             LC    +  A +    +  + G+  +A  +               A  L+ QM + GL
Sbjct: 585 DGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL 644

Query: 181 CVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            VP+  +Y  L+ G F   N ++ +  + + +   G+  DL +YT L+ GL    + ++A
Sbjct: 645 -VPDRTAYTSLMDGNFKQGNVLEAL-ALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKA 702

Query: 240 CQYFVEMIEKGLLPQKV 256
             +  EMI +G+ P +V
Sbjct: 703 RSFLEEMIGEGIHPDEV 719



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 102/220 (46%), Gaps = 12/220 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y + I+G C + +I+ A+  + EM E G++ N + Y  L++   +  S +P+E      
Sbjct: 509 LYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFK--SGNPTEGLH--- 563

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN-FMKEKGICPTVATYSS 119
                + DEM+   IE  V +F +++    +      ++D  N    + G+    A +++
Sbjct: 564 -----LLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTA 618

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC   ++E A  L  +MV+ G+ P    Y         + +   A+ L  +M E G
Sbjct: 619 MIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIG 678

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
           + + ++ +Y  L+      N++   R    ++ G G+ PD
Sbjct: 679 MKL-DLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPD 717



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 17/188 (9%)

Query: 94  QPQLSLDKLNF-MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV----------- 141
            P+L+     + M   G   +V +Y  V   L       DA  +L EMV           
Sbjct: 121 DPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDV 180

Query: 142 ----RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
               RN   P    ++  F           A++ + +MK   +  P   S N L+  F  
Sbjct: 181 LWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRV-FPKTRSCNGLLHRFAK 239

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
           L + D V+  + D+ G+G  P + +Y ++I  +C++   + A   F EM  +GL+P  VT
Sbjct: 240 LGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVT 299

Query: 258 FETLYRGL 265
           + ++  G 
Sbjct: 300 YNSMIDGF 307


>gi|11120809|gb|AAG30989.1|AC012396_25 hypothetical protein [Arabidopsis thaliana]
          Length = 466

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 130/266 (48%), Gaps = 15/266 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L +GWC++     A + L EMIE G +P   TY   ++  C+             + 
Sbjct: 169 FNVLFFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAG----------MVD 218

Query: 62  NAEKVFDEMRVRGIE---PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A  +FD M  +G     P   +F++++   ++  + +   + +  M   G  P V+TY 
Sbjct: 219 EAADLFDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYK 278

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            V++ +C   ++++A + L EM   G  P   TYNCF +     +  + A+KLY +M E 
Sbjct: 279 DVIEGMCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVE- 337

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
             C P++ +YN+LI MF  ++  D     W ++       D+++Y  +I+GL +  + KE
Sbjct: 338 SRCAPSVQTYNMLISMFFEMDDPDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKE 397

Query: 239 ACQYFVEMIEKGL-LPQKVTFETLYR 263
           AC    E++ KGL LP +V    L R
Sbjct: 398 ACFLLEEVVNKGLKLPYRVFDSFLMR 423



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 118/263 (44%), Gaps = 21/263 (7%)

Query: 26  IERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85
           I    +P +  +N+LL+ +C+             ++  E +   MR R ++PD  +F+++
Sbjct: 124 IRVKTQPEINAFNMLLDALCKCG----------LVKEGEALLRRMRHR-VKPDANTFNVL 172

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
              + R   P+ ++  L  M E G  P   TY + +   C  G +++A +L   M+  G 
Sbjct: 173 FFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGS 232

Query: 146 C---PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY-NILIGMFMALNRM 201
               P+A+T+            A    +L  +M   G C+P++ +Y +++ GM MA  ++
Sbjct: 233 AVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTG-CLPDVSTYKDVIEGMCMA-EKV 290

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           D   +  +++   G  PD+ +Y   +  LCE +K  EA + +  M+E    P   T+  L
Sbjct: 291 DEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNML 350

Query: 262 YRGLIQSD----MLRTWRRLKKK 280
                + D       TW  + K+
Sbjct: 351 ISMFFEMDDPDGAFNTWTEMDKR 373



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 76/176 (43%), Gaps = 10/176 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G C   ++D A +FL EM  +G  P++VTYN  L  +C            +   
Sbjct: 277 YKDVIEGMCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCE----------NRKTD 326

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K++  M      P V ++++++ ++     P  + +    M ++     V TY +++
Sbjct: 327 EALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTWTEMDKRDCVQDVETYCAMI 386

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
             L  C R ++A  LL E+V  G+      ++ F        +     K+   MK+
Sbjct: 387 NGLFDCHRAKEACFLLEEVVNKGLKLPYRVFDSFLMRLSEVGNLKAIHKVSEHMKK 442


>gi|313851107|ref|NP_001186539.1| pentatricopeptide repeat protein [Zea mays]
 gi|312064725|gb|ADQ27447.1| pentatricopeptide repeat protein [Zea mays]
 gi|414872960|tpg|DAA51517.1| TPA: hypothetical protein ZEAMMB73_325693 [Zea mays]
          Length = 489

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 137/266 (51%), Gaps = 12/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ GW +   +        +M+  G +P++VTY ++++ +C+             + 
Sbjct: 212 YSILLEGWGRAPSLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGR----------VE 261

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V  +M  RG +P    +SI++H Y    + + ++     M++ GI P V  Y++++
Sbjct: 262 EAVCVVQDMSSRGCQPTTFIYSILVHTYGVDMRIEDAVAAFLDMEKDGIMPDVVVYNALI 321

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   + E+A  ++ +M  +G+ P++ T+N            + A +++R M +   C
Sbjct: 322 TAFCKVKKFENAFRVMDDMQGHGISPNSRTWNIILNTLISLGKDDEAYRVFRSMIKR--C 379

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y ++I MF   ++++M  ++W  ++     P + ++++LI+GLC+K +  +AC 
Sbjct: 380 KPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACV 439

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +MIEKG+ P   TF  L + L++
Sbjct: 440 LLEDMIEKGIRPPGSTFGKLRQLLLK 465



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 125/291 (42%), Gaps = 46/291 (15%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           + +  ++D A      M + GV  N+  +N LL+ +C+           K +R A+++FD
Sbjct: 150 YARAQKLDEAVYTFNVMEKYGVAHNLAAFNSLLSALCK----------SKNVRKAQEIFD 199

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
           +M  R   PD  ++SI+L  + RA       +  + M   G  P + TY  +V  LC  G
Sbjct: 200 KMNNR-FSPDAKTYSILLEGWGRAPSLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTG 258

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           R+E+A  ++ +M   G  P+   Y+     Y        A+  +  M++DG+ +P++  Y
Sbjct: 259 RVEEAVCVVQDMSSRGCQPTTFIYSILVHTYGVDMRIEDAVAAFLDMEKDGI-MPDVVVY 317

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLG------------------------------- 217
           N LI  F  + + +    + +D++G G+                                
Sbjct: 318 NALITAFCKVKKFENAFRVMDDMQGHGISPNSRTWNIILNTLISLGKDDEAYRVFRSMIK 377

Query: 218 ---PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
              PD D+YTM+I   CE  K + A + +  M  K  LP   TF  L  GL
Sbjct: 378 RCKPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGL 428



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 108/225 (48%), Gaps = 10/225 (4%)

Query: 43  GVCRRA--SLHPSERFEKTIRNAEKVFDE---MRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
           GVC     S H        IR  + ++D    MR  G+  +V +F I++  Y+RA +   
Sbjct: 100 GVCAHTVRSYHTVVTSLAKIRQYQLMWDVVAIMRKEGV-ANVETFGIIMRKYARAQKLDE 158

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           ++   N M++ G+   +A ++S++  LC    +  A+E+  +M  N   P A+TY+   +
Sbjct: 159 AVYTFNVMEKYGVAHNLAAFNSLLSALCKSKNVRKAQEIFDKM-NNRFSPDAKTYSILLE 217

Query: 158 EYRGRKDANGAMK-LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
            + GR  +   M+ +Y  M   G C P++ +Y I++       R++    +  D+   G 
Sbjct: 218 GW-GRAPSLPKMREVYSDMLAAG-CQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSRGC 275

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            P    Y++L+H      + ++A   F++M + G++P  V +  L
Sbjct: 276 QPTTFIYSILVHTYGVDMRIEDAVAAFLDMEKDGIMPDVVVYNAL 320



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 87/168 (51%), Gaps = 17/168 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI  +CK+ + + A R + +M   G+ PN  T+N++LN +    SL   +      
Sbjct: 316 VYNALITAFCKVKKFENAFRVMDDMQGHGISPNSRTWNIILNTLI---SLGKDD------ 366

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A +VF  M ++  +PD  ++++++ ++    + +++L    +M+ K   P++ T+S +
Sbjct: 367 -EAYRVFRSM-IKRCKPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVL 424

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY----NCFFKEYRGRKD 164
           +  LC  G +  A  LL +M+  G+ P   T+        KE  GRKD
Sbjct: 425 INGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKE--GRKD 470


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 134/295 (45%), Gaps = 45/295 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLN------------------- 42
           YTSLI  +    R   A     +M E G +P ++TYNV+LN                   
Sbjct: 211 YTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKM 270

Query: 43  ---GV-------------CRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
              G+             C+R SLH         + A +VF+EM+  G   D  +++ +L
Sbjct: 271 KSDGIAPDAYTYNTLITCCKRGSLH---------QEAAQVFEEMKAAGFSHDKVTYNALL 321

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
            VY ++H+P+ ++  LN M+  G  P++ TY+S++      G +++A EL  +M   G  
Sbjct: 322 DVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTK 381

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P   TY      +        AM ++ +M+  G C PN+ ++N  I M+    +   + +
Sbjct: 382 PDVFTYTTLLSGFERAGKVESAMNIFEEMRNAG-CKPNICTFNAFIKMYGNRGKFVDMMK 440

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           I++++   GL PD+ ++  L+    +     E    F EM   G +P++ TF TL
Sbjct: 441 IFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTL 495



 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 119/244 (48%), Gaps = 12/244 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL++ +     I +      E+    +EP  V    L+  VC +  L P         
Sbjct: 562 YCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLV-LVCSKCDLLPE-------- 612

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+ F E++ RG  PD+T+ + ++ +Y R      + + L++MKE+G  P++ATY+S++
Sbjct: 613 -AERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLM 671

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                      +EE+L E++  G+ P   +YN     Y        A +++ +M++ G+ 
Sbjct: 672 YMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGI- 730

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++ +YN  IG + A +  +    +   +   G  P+ ++Y  ++ G C+  +  EA +
Sbjct: 731 VPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEA-K 789

Query: 242 YFVE 245
            FVE
Sbjct: 790 LFVE 793



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 104/209 (49%), Gaps = 11/209 (5%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +L+    K + +  AER   E+ ERG  P++ T N +++   RR          + +  A
Sbjct: 599 TLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRR----------QMVGKA 648

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            +V D M+ RG  P + +++ +++++SR+     S + L  +  KGI P + +Y++V+  
Sbjct: 649 NEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYA 708

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C   R+ DA  +  EM  +G+ P   TYN F   Y        A+ + R M + G C P
Sbjct: 709 YCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHG-CRP 767

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVK 212
           N ++YN ++  +  LNR D  +    D++
Sbjct: 768 NQNTYNSIVDGYCKLNRKDEAKLFVEDLR 796



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 109/260 (41%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI  + +    + A      M++ GV P++ TYN +L  + R      SE       
Sbjct: 492 FNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSE------- 544

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              KV  EM     +P+  ++  +LH Y+   +  L       +    I P      ++V
Sbjct: 545 ---KVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLV 601

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                C  + +AE    E+   G  P   T N     Y  R+    A ++   MKE G  
Sbjct: 602 LVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGF- 660

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+M +YN L+ M           EI  ++   G+ PD+ SY  +I+  C   + ++A +
Sbjct: 661 TPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASR 720

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F EM + G++P  +T+ T 
Sbjct: 721 IFSEMRDSGIVPDVITYNTF 740



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 125/321 (38%), Gaps = 63/321 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI  + +   +D A     +M E+G +P+V TY  LL+G  R   +  +    + +R
Sbjct: 352 YNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMR 411

Query: 62  NAE-------------------------KVFDEMRVRGIEPDVTS--------------- 81
           NA                          K+FDE+ V G+ PD+ +               
Sbjct: 412 NAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDS 471

Query: 82  --------------------FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                               F+ ++  YSR    + ++     M + G+ P ++TY++V+
Sbjct: 472 EVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVL 531

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             L   G  E +E++L EM  +G C P+  TY      Y   K+  G M    +    G+
Sbjct: 532 AALARGGMWEQSEKVLAEM-EDGRCKPNELTYCSLLHAYANGKEI-GLMHSLAEEVYSGV 589

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P       L+ +    + +      ++++K  G  PD+ +   ++     +Q   +A 
Sbjct: 590 IEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKAN 649

Query: 241 QYFVEMIEKGLLPQKVTFETL 261
           +    M E+G  P   T+ +L
Sbjct: 650 EVLDYMKERGFTPSMATYNSL 670



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 98/210 (46%), Gaps = 2/210 (0%)

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           E  + +A  +F+ ++  G   DV S++ ++  ++ + + + +++    M+E+G  PT+ T
Sbjct: 186 EGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLIT 245

Query: 117 YSSVVKCLCSCGRI-EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           Y+ ++      G        L+ +M  +G+ P A TYN      +       A +++ +M
Sbjct: 246 YNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEM 305

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           K  G     + +YN L+ ++   +R     ++ N+++ +G  P + +Y  LI        
Sbjct: 306 KAAGFSHDKV-TYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGM 364

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
             EA +   +M EKG  P   T+ TL  G 
Sbjct: 365 LDEAMELKNQMAEKGTKPDVFTYTTLLSGF 394



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 94/209 (44%), Gaps = 4/209 (1%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           D +  +IV+ +  +  +   + +  N ++E G    V +Y+S++    + GR  +A  + 
Sbjct: 172 DNSVIAIVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVF 231

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDA--NGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
            +M   G  P+  TYN     + G+     N    L  +MK DG+  P+ ++YN LI   
Sbjct: 232 KKMEEEGCKPTLITYNVILNVF-GKMGTPWNKITSLVEKMKSDGIA-PDAYTYNTLITCC 289

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
              +      +++ ++K +G   D  +Y  L+    +  + KEA +   EM   G  P  
Sbjct: 290 KRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSI 349

Query: 256 VTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
           VT+ +L     +  ML     LK ++ E+
Sbjct: 350 VTYNSLISAYARDGMLDEAMELKNQMAEK 378


>gi|357113487|ref|XP_003558534.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Brachypodium distachyon]
          Length = 520

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 140/288 (48%), Gaps = 18/288 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ GW      + AE F  EM E G++P++VTYN L++  C+           + + 
Sbjct: 219 FNILLSGW---KTSEDAEAFFAEMRELGIDPDLVTYNSLIDCQCK----------NRDVE 265

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ DEMR + I PDV +++ ++       QP  +   L  M E G  P V  Y++ +
Sbjct: 266 KAYKLLDEMREKEISPDVITYTSLIGGLGLIGQPDKARHLLKEMCELGCHPDVPAYNATI 325

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +      R+ DA  L+ EM   G+ P+A TYN FF+ Y    D   A  LY +M+ +  C
Sbjct: 326 RNFVIAKRLGDAFALMDEMASKGLMPNATTYNLFFRFYYWAYDIGSAWLLYERMRSER-C 384

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  S   ++ +     ++    E+W+D+ G+G G       +L   LC++ K +EA +
Sbjct: 385 FPNTQSCMFIVRLCHRHGKVMQALELWSDMVGNGFGSFTLVSDVLFDLLCDEGKLEEAER 444

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
            F +M+E G  P  V F  + + L+Q   L        KL+E+   FG
Sbjct: 445 CFHQMVELGQKPSSVAFRRI-KILMQ---LANREESISKLNEKMARFG 488


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 139/290 (47%), Gaps = 14/290 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI G CK  RID A  FL  MI  G  P+VVT+++L+NG+C              I 
Sbjct: 722 YSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGR----------ID 771

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++F  M  RG + D+ +++ +++ Y    +   +   L  MK  GI     T+  V+
Sbjct: 772 TGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVI 831

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC   RI++A      +  +  C    +YN         + +  A++L R M  DG  
Sbjct: 832 KALCGNDRIDEAVSYFHSIPED--CRDEISYNTLITSLVASRRSEQALELLRAMVADGGS 889

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
               +   ++ G+F A    ++  ++  +++  G  PDL +YT++I GL + ++   AC 
Sbjct: 890 PDACNYMTVMDGLFKA-GSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACD 948

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKKKLDEESITFGS 290
           YF EM+ K L P  + + +L     ++D +   W+ L+    E +IT  S
Sbjct: 949 YFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLRSSGIEPTITMYS 998



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 130/268 (48%), Gaps = 12/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G  K   +  A   L  MIE G+ P+V+T+N +L+G+C+          E+ I 
Sbjct: 476 YNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCK----------EQRIL 525

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  VF     RG  P+V ++S ++   S+  +   +L  L  M E G      TYS+VV
Sbjct: 526 DAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVV 585

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+EDA  +L +M   G  P A TYN     +  R+    A+ L R+M E G  
Sbjct: 586 DGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGF- 644

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  L        R D   EI + +   G  P+  +Y+ ++ GLC+  +  EA  
Sbjct: 645 HPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALG 704

Query: 242 YFVEMI-EKGLLPQKVTFETLYRGLIQS 268
           YF +M  ++ + P  + +  L  GL ++
Sbjct: 705 YFEKMARDEVVAPHVIAYSALIDGLCKA 732



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 132/279 (47%), Gaps = 13/279 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIE-RGVEPNVVTYNVLLNGVC-----RRASLHPSER 55
           +++LI G C   R++ A      M+   G+ PN  TY  LL G+C     RR      + 
Sbjct: 384 FSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQM 443

Query: 56  FEKTIRNAEK------VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG 109
            E+  R++          D + V+   P + +++ ++   S++   + +L  L FM E G
Sbjct: 444 LEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESG 503

Query: 110 ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAM 169
           + P V T++SV+  LC   RI DA  +    +  G  P+  TY+            + A+
Sbjct: 504 LSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEAL 563

Query: 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
           +L  +M E G C  N  +Y+ ++   + + RM+    +   ++ +G  PD  +Y  LI G
Sbjct: 564 QLLAKMVELG-CRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDG 622

Query: 230 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             ++Q+ +EA     EM+E G  P  VT+ TL  GL +S
Sbjct: 623 FFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRS 661



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 131/296 (44%), Gaps = 40/296 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR-------------- 47
           Y+++I G C+ N +D   + L EM  RG  PN VTYN L+N +  +              
Sbjct: 39  YSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMA 98

Query: 48  ASLHPSERF-----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           A+  P E             E  I  A +V DEM  RG  PDV   +++LH      +  
Sbjct: 99  ANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGR-- 156

Query: 97  LSLDKLNFMKEK----GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
             +D+  F  ++    G  P   TY+++V  L   GR+E A  +L  +  +   P+  T+
Sbjct: 157 --VDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTF 214

Query: 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
                      +  GA + +  M + G+  PN  +Y+ LI       ++D+   +  D K
Sbjct: 215 TIAVDGLSKAGNLTGAYEFFDSMPQTGVS-PNTVTYDALIDGLCKAGKLDIALGLLRD-K 272

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            S  G  + +++ L+HGLC+  + +EA Q    M     +P  V F +L  GL Q+
Sbjct: 273 NSQAG--MFAFSSLLHGLCQAHRLEEAIQLLKAM---PCVPNVVCFNSLMNGLCQA 323



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 146/291 (50%), Gaps = 23/291 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++T L++  C++ R+D A  F  +++  G  P+ VTYN +++G      L+ + R E   
Sbjct: 143 IHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDG------LYKAGRLEA-- 194

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  V   +      P V +F+I +   S+A     + +  + M + G+ P   TY ++
Sbjct: 195 --AGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDAL 252

Query: 121 VKCLCSCGRIEDAEELLGEM-VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +  LC  G+++ A  LL +   + G+   +   +   + +R  +    A++L + M    
Sbjct: 253 IDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEE----AIQLLKAMP--- 305

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            CVPN+  +N L+       R+D   E+++ +K SG   D+ +Y +L+ GLC+ ++  EA
Sbjct: 306 -CVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEA 364

Query: 240 CQYFVEMIEK--GLLPQKVTFETLYRGLIQSDML-RTWRRLKKKLDEESIT 287
            ++ VE++ +  G  P  VTF TL +GL  +  + + W   ++ +  E I+
Sbjct: 365 YRH-VELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGIS 414



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 126/288 (43%), Gaps = 11/288 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G CK  R+  A     + I+ G  P VVTY+ +++G+CR          +  + 
Sbjct: 4   YNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCR----------DNEVD 53

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K+ +EM  RG  P+  +++ +++      + + +   L  M   G  P + T+  ++
Sbjct: 54  KGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLII 113

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC  G IE A  ++ EMV  G  P  E +             + A   ++Q+   G  
Sbjct: 114 KGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGF- 172

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN ++       R++    +   +  S   P + ++T+ + GL +      A +
Sbjct: 173 TPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYE 232

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
           +F  M + G+ P  VT++ L  GL ++  L     L +  + ++  F 
Sbjct: 233 FFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFA 280



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 142/335 (42%), Gaps = 59/335 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + SL+ G C+  R+D A      M E G   +V+TYN+LL G+C+   +  + R  + +R
Sbjct: 313 FNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMR 372

Query: 62  NAE--------------------------KVFDEM-RVRGIEPDVTSFSIVLHVYSRA-- 92
             E                          +V++ M  V GI P+  +++ +L    +A  
Sbjct: 373 RTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGD 432

Query: 93  ------------------------HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
                                   H P++     +F+  +   PT+ TY+++V  L   G
Sbjct: 433 SRRLEQCFEQMLEREWRSSSSWPIHSPEV-----DFLMVQVCRPTLVTYNTLVTGLSKSG 487

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
            + DA  LL  M+ +G+ P   T+N         +    A  ++++  E G C PN+ +Y
Sbjct: 488 MVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERG-CRPNVVTY 546

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           + LI     + +MD   ++   +   G   +  +Y+ ++ GL +  + ++A     +M +
Sbjct: 547 STLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRD 606

Query: 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            G LP  VT+ TL  G  +   LR    L +++ E
Sbjct: 607 AGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLE 641



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 98/211 (46%), Gaps = 14/211 (6%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y +LI       R + A   L  M+  G  P+   Y  +++G+ +  S            
Sbjct: 860  YNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEV--------- 910

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             A K+  EMR RG  PD+ +++I++   S+A Q  L+ D    M  K + P    YSS++
Sbjct: 911  -AAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLI 969

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               C   +++DA +LL     +G+ P+   Y+         +  + A+++ R+MK    C
Sbjct: 970  DAFCKADKVDDAWKLLRS---SGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKN-C 1025

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
             P +H +  L   ++A  R+D   ++ ND++
Sbjct: 1026 EPGIHIWTSLATAYVAEGRVDEAVKLVNDLQ 1056



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 100/238 (42%), Gaps = 11/238 (4%)

Query: 34  VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93
           +VTYNVL+NG+C+             + +A   F +    G  P V ++S V+    R +
Sbjct: 1   MVTYNVLINGLCKAGR----------VCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDN 50

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           +       L  M  +G  P   TY+++V  L   GR ++A  LL  M  NG  P   T+ 
Sbjct: 51  EVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFG 110

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
              K      +   A ++  +M + G  VP++  + +L+     L R+D     +  V  
Sbjct: 111 LIIKGLCKEGEIEAAFRVVDEMVDRGF-VPDVEIHTVLLHALCELGRVDEAWFFFQQVLL 169

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
            G  PD  +Y  ++ GL +  + + A      + E    P   TF     GL ++  L
Sbjct: 170 IGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNL 227


>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
          Length = 584

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 134/280 (47%), Gaps = 21/280 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  LI   C+ +R+D A + L EM  +G  P+ V++  +++G+C+   +  +  F     
Sbjct: 107 YNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETV 166

Query: 57  ---------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK 101
                          E  +     V +EM  RG++P+V +++ ++  + +A + +++   
Sbjct: 167 PVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAI 226

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
           L  M   G  P V T++++VK     G++ DA  +   MV  G  PS  +YN   +    
Sbjct: 227 LARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCC 286

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
             D  GA+  +  MK + L +PN  +Y+ L+  F     +D    IWN++K SG  P++ 
Sbjct: 287 IGDLKGALDFFNSMKRNAL-LPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVV 345

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            YT +I  LC+K  + +A     +M+     P  VTF TL
Sbjct: 346 VYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTL 385



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 145/333 (43%), Gaps = 49/333 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++++  C   R+      + EM++RG++PNVVTY  +++  C+           + +R
Sbjct: 172 YNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCK----------ARELR 221

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M   G  P+V +F+ ++  +    +   +L   ++M ++G  P+  +Y+ ++
Sbjct: 222 MACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLI 281

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
           + LC  G ++ A +    M RN + P+A TY+     +    D +GAM ++ +MK  G  
Sbjct: 282 RGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCK 341

Query: 181 ---------------------------------CVPNMHSYNILIGMFMALNRMDMVREI 207
                                            C PN  ++N LIG      R+     +
Sbjct: 342 PNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNV 401

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           ++ ++ +G  P+  +Y  L+HGL  +   K+A    +EM+  G     VT+ T+   L Q
Sbjct: 402 FHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQ 461

Query: 268 -----SDMLRTWRRLKKKLDEESITFGSEFQNY 295
                  ML   R + + +  ++ TF +    Y
Sbjct: 462 MCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAY 494



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 124/303 (40%), Gaps = 48/303 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G C I  +  A  F   M    + PN  TY+ L++G      L           
Sbjct: 277 YNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLD---------- 326

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +++EM+  G +P+V  ++ ++ V  +      +   ++ M      P   T+++++
Sbjct: 327 GAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLI 386

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYN----CFFKEYRGRKDA---------NG- 167
             LC CGR+  A  +   M RNG  P+  TYN      F+E    KDA         NG 
Sbjct: 387 GRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFRE-GNHKDAFAMVIEMLNNGF 445

Query: 168 ----------------------AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
                                 AM L  +M   G+  P+  ++N +I  +    ++ +  
Sbjct: 446 ELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGI-QPDAFTFNAIIHAYCKEGKVSIAA 504

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            +   +       ++ +YT+LI  LC + K   A  Y ++M+ +G+ P + T+  L R +
Sbjct: 505 CLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLVRAI 564

Query: 266 IQS 268
             +
Sbjct: 565 FTN 567



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 116/268 (43%), Gaps = 25/268 (9%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           +D  +  L EM  RGV     T + L+  +   A    ++R  KT   A     ++  R 
Sbjct: 14  VDGVQYALQEMRLRGV---ACTEDALVAAIGAFARAGSADRALKTFYRAS----DLGCR- 65

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
            +P V  ++ +L    R +     +   + M++ G+ P V TY+ +++ LC   R++ A 
Sbjct: 66  -DPGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAAR 124

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL---CVPNMHSYNIL 191
           ++L EM R G  P   ++             +G  KL R  +  G     VP   SYN +
Sbjct: 125 KMLDEMSRKGCHPDEVSHGTI---------VSGMCKLGRVEEARGFLAETVPVQASYNAV 175

Query: 192 IGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 251
           +       RM  V  + N++   GL P++ +YT ++   C+ ++ + AC     M+  G 
Sbjct: 176 VHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGC 235

Query: 252 LPQKVTFETLYRGLIQS----DMLRTWR 275
            P  +TF  L +G  +     D L  W 
Sbjct: 236 TPNVLTFTALVKGFFEDGKVHDALSMWH 263



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 30/219 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC--------------- 45
           +YT++I   CK    D AE  + +M+     PN VT+N L+  +C               
Sbjct: 346 VYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGM 405

Query: 46  RRASLHPSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           RR   HP++R           E   ++A  +  EM   G E  + +++ V++   +    
Sbjct: 406 RRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMR 465

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV-CP-SAETYN 153
           + ++  L  M  +GI P   T+++++   C  G++  A  LLG+M  N V CP +   Y 
Sbjct: 466 KHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQM--NAVNCPRNVVAYT 523

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
               E   +   + AM    +M  +G+C PN  ++N+L+
Sbjct: 524 ILISELCNQGKLSNAMVYLLKMLYEGIC-PNEATWNVLV 561



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 84/177 (47%), Gaps = 10/177 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L++G  +      A   + EM+  G E ++VTYN ++N +C+              +
Sbjct: 417 YNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMR----------K 466

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +   M V+GI+PD  +F+ ++H Y +  +  ++   L  M        V  Y+ ++
Sbjct: 467 HAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTILI 526

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
             LC+ G++ +A   L +M+  G+CP+  T+N   +         G + L++ + ED
Sbjct: 527 SELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLVRAIFTNIGTIGPIHLFKYIVED 583



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 69/144 (47%)

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           L + G ++  +  L EM   GV  + +        +     A+ A+K + +  + G   P
Sbjct: 8   LPAAGDVDGVQYALQEMRLRGVACTEDALVAAIGAFARAGSADRALKTFYRASDLGCRDP 67

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
            +  YN L+   +  N +  V  ++++++ +G+ P++ +Y +LI  LC+  +   A +  
Sbjct: 68  GVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKML 127

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQ 267
            EM  KG  P +V+  T+  G+ +
Sbjct: 128 DEMSRKGCHPDEVSHGTIVSGMCK 151


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 152/300 (50%), Gaps = 17/300 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++T+LI G+ K  R+D A   L EM    ++ ++V YNV ++   +   +  + +F    
Sbjct: 205 LFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKF---- 260

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                 F E+   G++PD  +++ ++ V  +A++   +++    +++    P    Y+++
Sbjct: 261 ------FHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTM 314

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +    S G+ ++A  LL      G  PS   YNC     R     + A++++ +MK+D  
Sbjct: 315 IMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDA- 373

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+ +YNILI M     ++D   E+ + ++ +GL P++ +  +++  LC+ QK  EAC
Sbjct: 374 -APNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEAC 432

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKKKLDEE----SITFGSEFQNY 295
             F +M  K   P ++TF +L  GL +   +   ++  +K LD +    SI + S  +N+
Sbjct: 433 AIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNF 492



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 117/264 (44%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI+G  K    +        M E+G   +   YN++++G C+             + 
Sbjct: 555 YSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGK----------VN 604

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ +EM+ +G EP V ++  V+   ++  +   +       K K I   V  YSS++
Sbjct: 605 KAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLI 664

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 GRI++A  +L E+++ G+ P+  T+N         ++ N A+  ++ MKE   C
Sbjct: 665 DGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELK-C 723

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +Y ILI     + + +     W +++  G+ P   SYT +I GL +     EA  
Sbjct: 724 TPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGA 783

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F      G +P    +  +  GL
Sbjct: 784 LFDRFKANGGVPDSACYNAMIEGL 807



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 135/327 (41%), Gaps = 61/327 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + SLI G  K+ R+D A +   +M++     N + Y  L+             +  K + 
Sbjct: 450 FCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMV 509

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           N                            +F+E++ R   PD  S+SI++H   +A    
Sbjct: 510 NQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFAN 569

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC-- 154
            + +    MKE+G       Y+ V+   C CG++  A +LL EM   G  P+  TY    
Sbjct: 570 ETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVI 629

Query: 155 --------------FFKEYRGRK------------DANG-------AMKLYRQMKEDGLC 181
                          F+E + ++            D  G       A  +  ++ + GL 
Sbjct: 630 DGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGL- 688

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN++++N L+   +    ++     +  +K     P+  +Y +LI+GLC+ +K+ +A  
Sbjct: 689 TPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFV 748

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
           ++ EM ++G+ P  +++ T+  GL ++
Sbjct: 749 FWQEMQKQGMKPSTISYTTMISGLAKA 775



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 124/285 (43%), Gaps = 17/285 (5%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           K+ ++D A R   EM ++   PN+ TYN+L++ +CR   L  +  FE        + D M
Sbjct: 355 KMGKVDEALRVFEEM-KKDAAPNLSTYNILIDMLCRAGKLDCA--FE--------LRDSM 403

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
           +  G+ P+V + +I++    ++ +   +      M  K   P   T+ S++  L   GR+
Sbjct: 404 QKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRV 463

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           +DA ++  +M+ +    ++  Y    K +          K+Y+ M     C P++   N 
Sbjct: 464 DDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQN-CSPDLQLLNT 522

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
            +         +  R ++ ++K     PD  SY++LIHGL +     E  + F  M E+G
Sbjct: 523 YMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQG 582

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGS 290
            +     +  +  G  +   +    +L      K  +   +T+GS
Sbjct: 583 CVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGS 627



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 124/283 (43%), Gaps = 17/283 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVT-YNVLLNGVCRRASLHPSERFEKTI 60
           Y SL+    +    D  ++ LGEM   G  P+V T   ++L+  C +A+          +
Sbjct: 101 YNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLS--CVKAN---------KL 149

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R    V   MR     P  ++++ ++  +S  +   + L     M+E G  PTV  ++++
Sbjct: 150 REGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTL 209

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++     GR++ A  LL EM  + +      YN     +      + A K + +++ +GL
Sbjct: 210 IRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGL 269

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  +Y  +IG+    NR+D   E++  ++ +   P   +Y  +I G     K+ EA 
Sbjct: 270 -KPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAY 328

Query: 241 QYFVEMIEKGLLPQKVTFE---TLYRGLIQSD-MLRTWRRLKK 279
                   KG +P  + +    T  R + + D  LR +  +KK
Sbjct: 329 SLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKK 371



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 10/184 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+SLI G+ K+ RID A   L E++++G+ PNV T+N LL+ + +           + I
Sbjct: 659 IYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVK----------AEEI 708

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A   F  M+     P+  ++ I+++   +  +   +      M+++G+ P+  +Y+++
Sbjct: 709 NEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTM 768

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L   G I +A  L      NG  P +  YN   +       A  A  L+ + +  GL
Sbjct: 769 ISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGL 828

Query: 181 CVPN 184
            + N
Sbjct: 829 HIHN 832



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 79/196 (40%), Gaps = 38/196 (19%)

Query: 111 CPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET------------------- 151
           CP   +Y+S++  +  C   +  +++LGEM   G  PS  T                   
Sbjct: 97  CPE--SYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFD 154

Query: 152 ----------------YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
                           Y      +     ++  + L++QM+E G   P +H +  LI  F
Sbjct: 155 VVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGY-EPTVHLFTTLIRGF 213

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
               R+D    + +++K S L  D+  Y + I    +  K   A ++F E+   GL P +
Sbjct: 214 AKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDE 273

Query: 256 VTFETLYRGLIQSDML 271
           VT+ ++   L +++ L
Sbjct: 274 VTYTSMIGVLCKANRL 289


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 150/294 (51%), Gaps = 11/294 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ SL+YG C ++R + AE    EM ++GV PNVV +N ++  +C           E  +
Sbjct: 516 VFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCN----------EGQV 565

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++ D M   G+ P+V S++ ++  +  A +   +   L+ M   G+ P + +Y ++
Sbjct: 566 MVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTL 625

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C  GRI++A  L  EM+R GV P A TY+   +     +  + A +LY  M + G 
Sbjct: 626 LRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQ 685

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              ++++YNI++      N +D   +I+  +    L P++ ++T++I  L +  + K+A 
Sbjct: 686 -QWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAM 744

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
             F  +   GL+P  VT+  + + +IQ  +L  +  L   +++   T  S   N
Sbjct: 745 DLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLN 798



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 123/268 (45%), Gaps = 11/268 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L++G+     I      L  M+  G+ PN   +N++L    ++A           I
Sbjct: 411 IYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKA----------MI 460

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F  M   G+ PDV ++ I++    +  +   ++ K N M   G+ P    ++S+
Sbjct: 461 DEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSL 520

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  LC+  R E AEEL  EM   GV P+   +N              A +L   M+  G+
Sbjct: 521 VYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGV 580

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+ SYN LIG      R D   ++ + +   GL PDL SY  L+ G C+  +   A 
Sbjct: 581 -RPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAY 639

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             F EM+ KG+ P  VT+ T+ +GL  +
Sbjct: 640 CLFREMLRKGVTPGAVTYSTILQGLFHT 667



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 139/293 (47%), Gaps = 16/293 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK   +D AE  L  MI++GV+ +VVTY+ +++G+C+           + + 
Sbjct: 202 YNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCK----------AQAVD 251

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE V   M  +G++PDV +++ ++    +A     +   L  M +KG+ P V TY++++
Sbjct: 252 RAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTII 311

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    ++ A+ +L  M+   V P  +TYNC    Y    +    ++   +M   GL 
Sbjct: 312 DGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGL- 370

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y++L+       +    R+I+  +   G+ P++  Y +L+HG   +    +   
Sbjct: 371 DPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTD 430

Query: 242 YFVEMIEKGLLPQKVTFETLY-----RGLIQSDMLRTWRRLKKKLDEESITFG 289
               M+  G+ P    F  +      + +I   M    R  +  L  + +T+G
Sbjct: 431 LLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYG 483



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 138/293 (47%), Gaps = 30/293 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSE-RFEKT 59
           ++  ++  + K   ID A      M + G+ P+VVTY +L++ +C+   +  +  +F + 
Sbjct: 446 IFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQM 505

Query: 60  IRN------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           I +                        AE++F EM  +G+ P+V  F+ ++       Q 
Sbjct: 506 INDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQV 565

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
            ++   ++ M+  G+ P V +Y++++   C  GR ++A +LL  MV  G+ P   +Y+  
Sbjct: 566 MVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTL 625

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            + Y      + A  L+R+M   G+  P   +Y+ ++       R    +E++ ++  SG
Sbjct: 626 LRGYCKTGRIDNAYCLFREMLRKGV-TPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSG 684

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF----ETLYRG 264
              D+ +Y ++++GLC+     EA + F  +  K L P  +TF    + L++G
Sbjct: 685 QQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKG 737



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 120/289 (41%), Gaps = 30/289 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y+ L   +C++ RI+      G +++ G   N V  N LLNG+C    +  +        
Sbjct: 93  YSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRRM 152

Query: 57  ---------------------EKTIRNAEKVFDEMRVRG---IEPDVTSFSIVLHVYSRA 92
                                EK +  A ++   M   G     P+V +++ ++    +A
Sbjct: 153 PEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKA 212

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
                +   L  M +KG+   V TYS+++  LC    ++ AE +L  M+  GV P   TY
Sbjct: 213 QAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTY 272

Query: 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
           N         +  + A  + + M + G+  P++ +YN +I        +D    +   + 
Sbjct: 273 NTIIDGLCKAQAVDRAEGVLQHMIDKGV-KPDVVTYNTIIDGLCKAQAVDRADGVLQHMI 331

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
              + PD+ +Y  LIHG     +WKE  +   EM  +GL P  VT+  L
Sbjct: 332 DKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLL 380



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 112/260 (43%), Gaps = 13/260 (5%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMR--- 71
           ID A +   E++      +V  +N LLN V R        R   T   A  +F+ M    
Sbjct: 30  IDDALKLFDELLPHARPASVRAFNHLLNVVAR-------ARCSSTSELAVSLFNRMARAC 82

Query: 72  VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIE 131
              + PD+ ++SI+   + R  + +        + + G        + ++  LC   R++
Sbjct: 83  SNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVD 142

Query: 132 DAEE-LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG--LCVPNMHSY 188
           +A + LL  M   G  P+  + N   K     K    A++L   M EDG   C PN+ +Y
Sbjct: 143 EAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTY 202

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N +I        +D    +   +   G+  D+ +Y+ +I GLC+ Q    A      MI+
Sbjct: 203 NTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMID 262

Query: 249 KGLLPQKVTFETLYRGLIQS 268
           KG+ P  VT+ T+  GL ++
Sbjct: 263 KGVKPDVVTYNTIIDGLCKA 282



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 27/187 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV--CRRASLHPSERFEKT 59
           Y +L+ G+CK  RID A     EM+ +GV P  VTY+ +L G+   RR S    E +   
Sbjct: 622 YDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFS-EAKELYLNM 680

Query: 60  IRNAE------------------------KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           I++ +                        K+F  +  + + P++ +F+I++ V  +  + 
Sbjct: 681 IKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRK 740

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + ++D    +   G+ P V TY  ++K +   G +++ + L   M ++G  P +   N  
Sbjct: 741 KDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAI 800

Query: 156 FKEYRGR 162
            +   GR
Sbjct: 801 IRSLLGR 807


>gi|218184813|gb|EEC67240.1| hypothetical protein OsI_34171 [Oryza sativa Indica Group]
          Length = 458

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 126/255 (49%), Gaps = 11/255 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+ K    D A     EM+ R + PNVVTY+ ++  +C+           + + 
Sbjct: 207 YTTVINGFFKEGDSDKAYSTYHEMLGRRISPNVVTYSSIIAALCK----------AQAMD 256

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V + M   G+ PD  ++S +LH Y  + QP+  +  LN M+  G+ P V TY S++
Sbjct: 257 KAMEVLNTMVKNGVMPDCMTYSSILHGYCSSGQPKEDIGTLNKMRSDGVEPNVVTYRSLM 316

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR   A ++   M + G+ P   TY    + Y  +        L   M  +G+ 
Sbjct: 317 NYLCKNGRCTKARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI- 375

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ H +NILI  +    ++D    +++ ++  GL P++  Y  +I  LC+     +A  
Sbjct: 376 QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAML 435

Query: 242 YFVEMIEKGLLPQKV 256
           YF +MI++GL P  +
Sbjct: 436 YFEQMIDEGLTPNII 450



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 122/291 (41%), Gaps = 34/291 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI   C+  R+D+    LG +I++G     +T+  LL G+C  A    S+  +  +R
Sbjct: 98  YSILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFAPLLKGLC--ADKRTSDAMDIVLR 155

Query: 62  NAEK------VF----------DEMRVR---------------GIEPDVTSFSIVLHVYS 90
              +      VF          DE R +               G  PDV S++ V++ + 
Sbjct: 156 RMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFF 215

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
           +      +    + M  + I P V TYSS++  LC    ++ A E+L  MV+NGV P   
Sbjct: 216 KEGDSDKAYSTYHEMLGRRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCM 275

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           TY+     Y         +    +M+ DG+  PN+ +Y  L+       R    R+I++ 
Sbjct: 276 TYSSILHGYCSSGQPKEDIGTLNKMRSDGV-EPNVVTYRSLMNYLCKNGRCTKARKIFDS 334

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   GL PD+ +Y  L+ G   K    E       M+  G+ P    F  L
Sbjct: 335 MTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNIL 385


>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
          Length = 637

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 134/280 (47%), Gaps = 21/280 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  LI   C+ +R+D A + L EM  +G  P+ V++  +++G+C+   +  +  F     
Sbjct: 160 YNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETV 219

Query: 57  ---------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK 101
                          E  +     V +EM  RG++P+V +++ ++  + +A + +++   
Sbjct: 220 PVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAI 279

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
           L  M   G  P V T++++VK     G++ DA  +   MV  G  PS  +YN   +    
Sbjct: 280 LARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCC 339

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
             D  GA+  +  MK + L +PN  +Y+ L+  F     +D    IWN++K SG  P++ 
Sbjct: 340 IGDLKGALDFFNSMKRNAL-LPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVV 398

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            YT +I  LC+K  + +A     +M+     P  VTF TL
Sbjct: 399 VYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTL 438



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 145/333 (43%), Gaps = 49/333 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++++  C   R+      + EM++RG++PNVVTY  +++  C+           + +R
Sbjct: 225 YNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCK----------ARELR 274

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M   G  P+V +F+ ++  +    +   +L   ++M ++G  P+  +Y+ ++
Sbjct: 275 MACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLI 334

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
           + LC  G ++ A +    M RN + P+A TY+     +    D +GAM ++ +MK  G  
Sbjct: 335 RGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCK 394

Query: 181 ---------------------------------CVPNMHSYNILIGMFMALNRMDMVREI 207
                                            C PN  ++N LIG      R+     +
Sbjct: 395 PNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNV 454

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           ++ ++ +G  P+  +Y  L+HGL  +   K+A    +EM+  G     VT+ T+   L Q
Sbjct: 455 FHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQ 514

Query: 268 -----SDMLRTWRRLKKKLDEESITFGSEFQNY 295
                  ML   R + + +  ++ TF +    Y
Sbjct: 515 MCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAY 547



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 124/303 (40%), Gaps = 48/303 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G C I  +  A  F   M    + PN  TY+ L++G      L           
Sbjct: 330 YNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLD---------- 379

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +++EM+  G +P+V  ++ ++ V  +      +   ++ M      P   T+++++
Sbjct: 380 GAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLI 439

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYN----CFFKEYRGRKDA---------NG- 167
             LC CGR+  A  +   M RNG  P+  TYN      F+E    KDA         NG 
Sbjct: 440 GRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFRE-GNHKDAFAMVIEMLNNGF 498

Query: 168 ----------------------AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
                                 AM L  +M   G+  P+  ++N +I  +    ++ +  
Sbjct: 499 ELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGI-QPDAFTFNAIIHAYCKEGKVSIAA 557

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            +   +       ++ +YT+LI  LC + K   A  Y ++M+ +G+ P + T+  L R +
Sbjct: 558 CLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLVRAI 617

Query: 266 IQS 268
             +
Sbjct: 618 FTN 620



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 116/267 (43%), Gaps = 25/267 (9%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           +D  +  L EM  RGV     T + L+  +   A    ++R  KT   A     ++  R 
Sbjct: 67  VDGVQYALQEMRLRGV---ACTEDALVAAIGAFARAGSADRALKTFYRAS----DLGCR- 118

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
            +P V  ++ +L    R +     +   + M++ G+ P V TY+ +++ LC   R++ A 
Sbjct: 119 -DPGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAAR 177

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL---CVPNMHSYNIL 191
           ++L EM R G  P   ++             +G  KL R  +  G     VP   SYN +
Sbjct: 178 KMLDEMSRKGCHPDEVSHGTI---------VSGMCKLGRVEEARGFLAETVPVQASYNAV 228

Query: 192 IGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 251
           +       RM  V  + N++   GL P++ +YT ++   C+ ++ + AC     M+  G 
Sbjct: 229 VHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGC 288

Query: 252 LPQKVTFETLYRGLIQS----DMLRTW 274
            P  +TF  L +G  +     D L  W
Sbjct: 289 TPNVLTFTALVKGFFEDGKVHDALSMW 315



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 30/219 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC--------------- 45
           +YT++I   CK    D AE  + +M+     PN VT+N L+  +C               
Sbjct: 399 VYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGM 458

Query: 46  RRASLHPSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           RR   HP++R           E   ++A  +  EM   G E  + +++ V++   +    
Sbjct: 459 RRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMR 518

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV-CP-SAETYN 153
           + ++  L  M  +GI P   T+++++   C  G++  A  LLG+M  N V CP +   Y 
Sbjct: 519 KHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQM--NAVNCPRNVVAYT 576

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
               E   +   + AM    +M  +G+C PN  ++N+L+
Sbjct: 577 ILISELCNQGKLSNAMVYLLKMLYEGIC-PNEATWNVLV 614



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 84/177 (47%), Gaps = 10/177 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L++G  +      A   + EM+  G E ++VTYN ++N +C+              +
Sbjct: 470 YNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMR----------K 519

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +   M V+GI+PD  +F+ ++H Y +  +  ++   L  M        V  Y+ ++
Sbjct: 520 HAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTILI 579

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
             LC+ G++ +A   L +M+  G+CP+  T+N   +         G + L++ + ED
Sbjct: 580 SELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLVRAIFTNIGTIGPIHLFKYIVED 636



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 73/151 (48%)

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           + + V+ L + G ++  +  L EM   GV  + +        +     A+ A+K + +  
Sbjct: 54  HEATVRRLAAAGDVDGVQYALQEMRLRGVACTEDALVAAIGAFARAGSADRALKTFYRAS 113

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           + G   P +  YN L+   +  N +  V  ++++++ +G+ P++ +Y +LI  LC+  + 
Sbjct: 114 DLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRV 173

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
             A +   EM  KG  P +V+  T+  G+ +
Sbjct: 174 DAARKMLDEMSRKGCHPDEVSHGTIVSGMCK 204


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  126 bits (317), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 140/286 (48%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +++ G+CKI  +  AE +  ++++ G+ P+  TY  L+ G CR           K + 
Sbjct: 197 FNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRN----------KGVD 246

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA +VF  M  +G + +  S++ ++H    A +   +L     M E   CPTV TY+ ++
Sbjct: 247 NAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLI 306

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR  +A  L  EM   G  P+  TY             + A K+  +M E GL 
Sbjct: 307 YALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGL- 365

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +YN LI  +     +D   EI + ++ +  GP+  +Y  LI GLC+K+K  +A  
Sbjct: 366 IPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMA 425

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              +M+E+ L P  +T+ +L  G  + + L +  RL   ++E  + 
Sbjct: 426 LLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLV 471



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 137/310 (44%), Gaps = 26/310 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------------- 48
           YT LI G CK N++D A + L EM E+G+ P+VVTYN L++G C+               
Sbjct: 337 YTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLME 396

Query: 49  --SLHPSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
             S  P+ R           ++ +  A  + ++M  R + P + +++ ++H   + +  +
Sbjct: 397 SNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLE 456

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L+ M E G+ P   TYS  +  LC  GR+E+A  L   +   GV  +   Y    
Sbjct: 457 SAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALI 516

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y      + A  L  +M  D  C+PN ++YN+LI       +M     +   +   G+
Sbjct: 517 DGYCKVGKIDVAYSLLERMLNDA-CLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGV 575

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P + +YT+LI  + +   +  A + F  M+  G  P   T+           ML     
Sbjct: 576 KPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDD 635

Query: 277 LKKKLDEESI 286
           +  K++EE I
Sbjct: 636 VIAKMNEEGI 645



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 17/266 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVL---LNGVCRRASLHPSERFEK 58
           YT+LI+G C+  RI+ A +   +M E    P V TY VL   L+G  R+           
Sbjct: 267 YTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVE--------- 317

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
               A  +F+EM+ +G EP+V ++++++    + ++   +   L+ M EKG+ P+V TY+
Sbjct: 318 ----ALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYN 373

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++   C  G I+DA E+L  M  N   P+  TYN        ++  + AM L  +M E 
Sbjct: 374 ALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLER 433

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
            L  P++ +YN LI     +N ++    + + +  +GL PD  +Y++ I  LC++ + +E
Sbjct: 434 KLS-PSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEE 492

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRG 264
           A   F  +  KG+   +V +  L  G
Sbjct: 493 AGTLFDSVKAKGVKANEVIYTALIDG 518



 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 131/308 (42%), Gaps = 44/308 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF---- 56
           +YT+LI G+CK+ +ID+A   L  M+     PN  TYNVL+ G+C+   +  +       
Sbjct: 511 IYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKM 570

Query: 57  ---------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                +    +A KVF+ M   G +PDV +++  LH Y      
Sbjct: 571 LTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGML 630

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           +   D +  M E+GI P + TY+ ++      G    A + L  MV  G  PS    +  
Sbjct: 631 EEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSIL 690

Query: 156 F---------KEYRGRKDANG---------AMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
                     KE R     +          A+KL+ +M E G C  ++  Y  LI  F  
Sbjct: 691 IKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHG-CTIDVSIYGALIAGFCQ 749

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
             R++  + + + +K  G+ P  D Y  L+   C+   + EA +    M+E GLLP   +
Sbjct: 750 QERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLES 809

Query: 258 FETLYRGL 265
           ++ L  GL
Sbjct: 810 YKLLVCGL 817



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 128/274 (46%), Gaps = 11/274 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+G CK+N ++ A R L  M E G+ P+  TY+V ++ +C+          E  + 
Sbjct: 442 YNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCK----------EGRVE 491

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +FD ++ +G++ +   ++ ++  Y +  +  ++   L  M      P   TY+ ++
Sbjct: 492 EAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLI 551

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC   ++++A  L+ +M+  GV P+  TY     E       + A+K++  M   G  
Sbjct: 552 EGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGY- 610

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y   +  + +   ++ V ++   +   G+ PDL +YT+LI G         A  
Sbjct: 611 QPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFD 670

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           +   M++ G  P       L + L   + ++  R
Sbjct: 671 FLKCMVDTGCKPSLYIVSILIKNLSHENRMKETR 704



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 118/270 (43%), Gaps = 46/270 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++    K   ID  +    E++   + PN+ T+N ++NG C+  ++  +E +   I 
Sbjct: 162 YNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIV 221

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A          G+ PD  +++ ++  + R      + +    M +KG      +Y++++
Sbjct: 222 QA----------GLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLI 271

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GRI                                   N A+KL+  M ED  C
Sbjct: 272 HGLCEAGRI-----------------------------------NEALKLFADMTEDN-C 295

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +Y +LI       R      ++N++K  G  P++ +YT+LI GLC++ K  EA +
Sbjct: 296 CPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARK 355

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              EM EKGL+P  VT+  L  G  +  M+
Sbjct: 356 MLSEMSEKGLIPSVVTYNALIDGYCKEGMI 385



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 111/237 (46%), Gaps = 9/237 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHP--SERFEKT 59
           YT LI G+ ++     A  FL  M++ G +P++   ++L+  +     +    SE    +
Sbjct: 652 YTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDS 711

Query: 60  IRN------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPT 113
           + N      A K+F++M   G   DV+ +  ++  + +  + + +   ++ MKE+G+ P+
Sbjct: 712 VSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPS 771

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
              Y+S++ C C  G   +A  L+  MV NG+ P  E+Y               A  ++ 
Sbjct: 772 EDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFH 831

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
            +   G     + ++ +LI   +  + +D   E+ + ++  G  P+  +Y++LI GL
Sbjct: 832 GLLSCGYNYDEV-AWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGL 887



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 5/184 (2%)

Query: 101 KLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160
           K+N   E    PT+  Y++++  L     I++ + +  E++ N + P+  T+N     Y 
Sbjct: 146 KMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYC 205

Query: 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
              +   A     ++ + GL  P+  +Y  LI        +D   E++  +   G   + 
Sbjct: 206 KIGNVVEAELYASKIVQAGL-HPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNE 264

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRR 276
            SYT LIHGLCE  +  EA + F +M E    P   T+  L   L  S    + L  +  
Sbjct: 265 VSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNE 324

Query: 277 LKKK 280
           +K+K
Sbjct: 325 MKEK 328


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  126 bits (317), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 139/295 (47%), Gaps = 26/295 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR-RASLHPSERFEKT- 59
           Y +L+ G CK+ R++ A   L ++++ G  P+VVTY  L++G+ + + S    + F++  
Sbjct: 203 YNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMA 262

Query: 60  -----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  I  A  V+  M  +G  PDV + S ++    +A +  
Sbjct: 263 LRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIG 322

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++     M+ +G+ P    YS+++  LC   +++ A E+L +M +    P   TYN   
Sbjct: 323 AAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 382

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                  D   A   + +M E G C P++++YNIL+  F      D    +++D+  S  
Sbjct: 383 DGLCKSGDVEAARAFFDEMLEAG-CKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHC 441

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
            P++ +Y  LI GLC++++  +A  YF  M E+G  P    + +L  GL +S  L
Sbjct: 442 SPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKL 496



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 130/266 (48%), Gaps = 14/266 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRAS-LHPSERFEKTIRN 62
           LI G+C     + A   + EM E  GV P++ T+N++L+G+C+    L   + FE T  N
Sbjct: 100 LITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTN 159

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
                      G   D+ +++ ++   ++  + Q ++  +  +   G  PT+ATY++++ 
Sbjct: 160 -----------GCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLN 208

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  GR+E+A +LL ++V NG  P   TY          K +  A KL+++M   GL V
Sbjct: 209 GLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGL-V 267

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
            +   Y  LI   +   ++     ++  +   G  PD+ + + +I GLC+  +   A + 
Sbjct: 268 LDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRI 327

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQS 268
           F  M  +GL P +V +  L  GL ++
Sbjct: 328 FKSMEARGLAPNEVVYSALIHGLCKA 353



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 111/250 (44%), Gaps = 11/250 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G  +  +I  A      M  +G  P+VVT + +++G+C+             I 
Sbjct: 273 YTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGR----------IG 322

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F  M  RG+ P+   +S ++H   +A +   +L+ L  MK+    P   TY+ ++
Sbjct: 323 AAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 382

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +E A     EM+  G  P   TYN     +    + + A  ++  M     C
Sbjct: 383 DGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSH-C 441

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  LI       ++      +  +K  G  PD   Y+ L+ GLC+  K +  C 
Sbjct: 442 SPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCM 501

Query: 242 YFVEMIEKGL 251
            F EM   G+
Sbjct: 502 LFDEMERSGV 511



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 118/256 (46%), Gaps = 10/256 (3%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
           P+V T+NVL+ G C   +  P E F   IR  E+ +      G+ P + + ++VLH   +
Sbjct: 92  PDVETWNVLITGYC--LAREPEEAF-AVIREMEEDY------GVAPSLKTHNLVLHGLCK 142

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
           + +   ++D        G    + TY+++V  L    +I+DA  L+ ++  NG  P+  T
Sbjct: 143 SGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIAT 202

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           YN              A+ L R++ ++G C P++ +Y  LI       R     +++ ++
Sbjct: 203 YNALLNGLCKMGRLEEAIDLLRKIVDNG-CTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM 261

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              GL  D   YT LI GL +  K  +A   +  M  +G +P  VT  T+  GL ++  +
Sbjct: 262 ALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRI 321

Query: 272 RTWRRLKKKLDEESIT 287
               R+ K ++   + 
Sbjct: 322 GAAVRIFKSMEARGLA 337



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 105/235 (44%), Gaps = 13/235 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y++LI+G CK  ++D A   L +M +    P+ +TYN+L++G+C+   +  +  F    
Sbjct: 342 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAF---- 397

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                 FDEM   G +PDV +++I++  + +A     +    + M      P V TY ++
Sbjct: 398 ------FDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTL 451

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   ++  A      M   G  P +  Y+             G   L+ +M+  G 
Sbjct: 452 ISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSG- 510

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            V N  +   LI      NR+D    ++N ++  G+ P   +Y  +I  L +  K
Sbjct: 511 -VANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSIISTLIKSAK 563



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 75/175 (42%)

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
           +V T ++++       R  +A  LL   +     P  ET+N     Y   ++   A  + 
Sbjct: 58  SVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEAFAVI 117

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
           R+M+ED    P++ ++N+++       ++    + +     +G   D+ +YT ++  L +
Sbjct: 118 REMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAK 177

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            +K ++A     ++   G  P   T+  L  GL +   L     L +K+ +   T
Sbjct: 178 NKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCT 232


>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 451

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 123/234 (52%), Gaps = 11/234 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++ GWC I R   A   L EM++RG+ PN+ TYN +L G  R             IR
Sbjct: 196 YNVIVNGWCLIKRTPKALEVLKEMVDRGINPNLTTYNTMLQGFFRAGQ----------IR 245

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A + F EM+ R  E DV +++ V+H +  A + + + +  + M  +G+ P+VATY++ +
Sbjct: 246 QAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKRTRNVFDEMIREGVLPSVATYNAFI 305

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC    +E+A  +  EMVR G  P+  TYN   +        +   +L ++M+ +G C
Sbjct: 306 QVLCKKDSVENAVVMFEEMVRKGYEPNVTTYNVLIRGLFHAGKFSRGEELMQRMENEG-C 364

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            PN  +YN++I  +   + ++    ++  +      P+LD+Y +LI G+  +++
Sbjct: 365 EPNFQTYNMMIRYYSECSEVEKALGLFEKMGTGDCLPNLDTYNILISGMFVRKR 418



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 125/266 (46%), Gaps = 14/266 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +++   CK  R++ A      +  R    + VTYNV++NG C            K   
Sbjct: 162 FNTILDVLCKSKRVEKAYELFRALRGR-FSADTVTYNVIVNGWC----------LIKRTP 210

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V  EM  RGI P++T+++ +L  + RA Q + + +    MK++     V TY++VV
Sbjct: 211 KALEVLKEMVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVV 270

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G I+    +  EM+R GV PS  TYN F +    +     A+ ++ +M   G  
Sbjct: 271 HGFGVAGEIKRTRNVFDEMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGY- 329

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            PN+ +YN+LI G+F A  +     E+   ++  G  P+  +Y M+I    E  + ++A 
Sbjct: 330 EPNVTTYNVLIRGLFHA-GKFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKAL 388

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLI 266
             F +M     LP   T+  L  G+ 
Sbjct: 389 GLFEKMGTGDCLPNLDTYNILISGMF 414



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 4/234 (1%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A K+F  M   G   D+ SF+ +L V  ++ + + + +    ++ +    TV TY+ +V 
Sbjct: 143 AVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSADTV-TYNVIVN 201

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C   R   A E+L EMV  G+ P+  TYN   + +        A + + +MK+   C 
Sbjct: 202 GWCLIKRTPKALEVLKEMVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRN-CE 260

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
            ++ +Y  ++  F     +   R +++++   G+ P + +Y   I  LC+K   + A   
Sbjct: 261 IDVVTYTTVVHGFGVAGEIKRTRNVFDEMIREGVLPSVATYNAFIQVLCKKDSVENAVVM 320

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYH 296
           F EM+ KG  P   T+  L RGL  +        L ++++ E       FQ Y+
Sbjct: 321 FEEMVRKGYEPNVTTYNVLIRGLFHAGKFSRGEELMQRMENEGCE--PNFQTYN 372



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 10/131 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y + I   CK + ++ A     EM+ +G EPNV TYNVL+ G      L  + +F +   
Sbjct: 301 YNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVTTYNVLIRG------LFHAGKFSR--- 351

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             E++   M   G EP+  ++++++  YS   + + +L     M      P + TY+ ++
Sbjct: 352 -GEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGTGDCLPNLDTYNILI 410

Query: 122 KCLCSCGRIED 132
             +    R ED
Sbjct: 411 SGMFVRKRSED 421


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 137/282 (48%), Gaps = 11/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI G     ++  A      MI+ G EPNVV YN L++G+C   SL           
Sbjct: 317 FTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLE---------- 366

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V D+M+  G  P+VT++SI++  ++++     + +  N M   G  P V TY+ +V
Sbjct: 367 EALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMV 426

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC     + A  L+ +M   G  P+  T+N F K   G      AMKL  +M+  G C
Sbjct: 427 DVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHG-C 485

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+ +YN L+     +N+ +    ++ +++   L P+L +Y  +++G        EA Q
Sbjct: 486 LPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQ 545

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            F + + +G  P  +T+ T+     +   ++   +L +++  
Sbjct: 546 LFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSS 587



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 135/282 (47%), Gaps = 22/282 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L+      N+  M       M + G+ PNV TYN+LL  +C+      ++R +   
Sbjct: 146 IYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCK------NDRVDA-- 197

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+F EM  +G  PD  +++ ++    +A +   + +     K     P+V  Y+++
Sbjct: 198 --AHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK-----PSVPVYNAL 250

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  +C  GRIE A +LLGEM+ NGV P+  +Y+C         +   A  L+ QM   G 
Sbjct: 251 IDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG- 309

Query: 181 CVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           C  N+H++  LI G FM   ++    ++W  +   G  P++ +Y  LIHGLC     +EA
Sbjct: 310 CDANIHTFTPLIKGCFMR-GKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEA 368

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDML----RTWRRL 277
            Q   +M   G LP   T+  L  G  +S  L     TW R+
Sbjct: 369 LQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRM 410



 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 151/334 (45%), Gaps = 49/334 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G CK  RI++A + LGEM++ GV+PNVV+Y+ ++N +C   +          +
Sbjct: 246 VYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGN----------V 295

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F +M +RG + ++ +F+ ++       +   +LD    M + G  P V  Y+++
Sbjct: 296 ELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTL 355

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LCS G +E+A ++  +M R+G  P+  TY+     +    D  GA + + +M   G 
Sbjct: 356 IHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGC 415

Query: 181 ----------------------------------CVPNMHSYNILIGMFMALNRMDMVRE 206
                                             C PN  ++N  I       R++   +
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMK 475

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +   ++G G  P++ +Y  L+  L    K++EA   F E+  + L P  VT+ T+  G  
Sbjct: 476 LLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFS 535

Query: 267 QSDMLRTW-----RRLKKKLDEESITFGSEFQNY 295
           ++ M+        + L +    +SIT+ +    Y
Sbjct: 536 RAGMMGEALQLFGKALVRGTAPDSITYNTMIHAY 569



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 132/287 (45%), Gaps = 18/287 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+   CK +R+D A +   EM  +G  P+ VTY  +++ +C+               
Sbjct: 182 YNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCK--------------- 226

Query: 62  NAEKVFDEMRVRG-IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            A K+ D   + G  +P V  ++ ++    +  + ++++  L  M + G+ P V +YS +
Sbjct: 227 -AGKIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCI 285

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G +E A  L  +M   G   +  T+    K    R     A+ L++ M +DG 
Sbjct: 286 INSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDG- 344

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN+ +YN LI    +   ++   ++ + ++ SG  P++ +Y++LI G  +      A 
Sbjct: 345 CEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGAS 404

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           + +  MI  G  P  VT+  +   L ++ M      L +K+  E  T
Sbjct: 405 ETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCT 451



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 125/307 (40%), Gaps = 55/307 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G C    ++ A +   +M   G  PNV TY++L++G  +   L           
Sbjct: 352 YNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDL----------V 401

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK----GICPTVATY 117
            A + ++ M   G  P+V +++ ++ V  +        D+ N + EK    G  P   T+
Sbjct: 402 GASETWNRMISHGCRPNVVTYTCMVDVLCKNSM----FDQANSLVEKMTLEGCTPNTITF 457

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           ++ +K LC  GR+E A +LL  M  +G  P+  TYN              A  L+++++ 
Sbjct: 458 NTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEA 517

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWND--VKGSG-------------------- 215
             L  PN+ +YN ++  F     M    +++    V+G+                     
Sbjct: 518 RNL-QPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVK 576

Query: 216 --------------LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
                           PD+ +YT LI G C     +EA  +  + I +G+ P   T+  L
Sbjct: 577 IAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNAL 636

Query: 262 YRGLIQS 268
            R    S
Sbjct: 637 VRCFFDS 643



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 86/169 (50%), Gaps = 1/169 (0%)

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
           T +TY  +++ L     ++  + +L +M  +G+    + + C    Y+    A  A+K++
Sbjct: 73  TASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMF 132

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
            ++ E G C P +  YN L+   ++ N+  M+  ++ ++K  GL P++ +Y +L+  LC+
Sbjct: 133 YRIGEFG-CKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCK 191

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
             +   A + FVEM  KG  P  VT+ T+   L ++  +   R L  + 
Sbjct: 192 NDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRF 240


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 136/262 (51%), Gaps = 13/262 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI G+C+ + +  A   L EM +R + P+ V+Y  ++NG+C            K +  A 
Sbjct: 320 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHC----------KDLSLAN 369

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           K+ ++M   G++P+V  +S ++  Y+   + + +   L+ M   G+ P +  Y++++ CL
Sbjct: 370 KLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL 429

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
              G++E+A   L E+   G+ P A T+  F   Y        A K + +M + GL +PN
Sbjct: 430 SKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGL-MPN 488

Query: 185 MHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
              Y +LI G F A N M+ +  I+  +   G+ PD+ + +  IHGL +  + +EA + F
Sbjct: 489 NPLYTVLINGHFKAGNLMEAL-SIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVF 547

Query: 244 VEMIEKGLLPQKVTFETLYRGL 265
            E+ EKGL+P   T+ +L  G 
Sbjct: 548 SELKEKGLVPDVFTYSSLISGF 569



 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 137/285 (48%), Gaps = 12/285 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + + I G+ K  ++  A ++  EM++ G+ PN   Y VL+NG  +  +L           
Sbjct: 457 FGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNL----------M 506

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F  +   G+ PDV + S  +H   +  + Q +L   + +KEKG+ P V TYSS++
Sbjct: 507 EALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI 566

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +E A EL  EM   G+ P+   YN          D   A KL+  M E GL 
Sbjct: 567 SGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGL- 625

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y+ +I  +     +     +++++   G+ P    Y  L+HG C++   ++A  
Sbjct: 626 EPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMN 685

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F EM++KG     ++F TL  G  +S  ++   +L +++  + I
Sbjct: 686 LFREMLQKG-FATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQI 729



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 135/279 (48%), Gaps = 15/279 (5%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           ++LI G+ +   ID   R    M+  G+  N++TYNVL++G+C+         F K  + 
Sbjct: 248 SALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCK---------FGKMEKA 298

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           AE +   M   G +P+  +F +++  Y R H    +L+ L+ M+++ + P+  +Y +++ 
Sbjct: 299 AE-ILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMIN 357

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC C  +  A +LL +M  +G+ P+   Y+     Y        A +L   M   G+  
Sbjct: 358 GLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGV-A 416

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++  YN +I       +M+       +++G GL PD  ++   I G  +  K  EA +Y
Sbjct: 417 PDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKY 476

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRL 277
           F EM++ GL+P    +  L  G  ++    + L  +R L
Sbjct: 477 FDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHL 515



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 144/324 (44%), Gaps = 30/324 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y++LI G+    RI+ A R L  M   GV P++  YN +++ + +   +  +  +   I
Sbjct: 386 VYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEI 445

Query: 61  RN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           +                          A K FDEM   G+ P+   ++++++ + +A   
Sbjct: 446 QGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNL 505

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +L     +   G+ P V T S+ +  L   GR+++A ++  E+   G+ P   TY+  
Sbjct: 506 MEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSL 565

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +  + +   A +L+ +M   G+  PN+  YN L+        +   R++++ +   G
Sbjct: 566 ISGFCKQGEVEKAFELHDEMCLKGI-APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG 624

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI-QSDM---L 271
           L PD  +Y+ +I G C+ +   EA   F EM  KG+ P    +  L  G   + DM   +
Sbjct: 625 LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAM 684

Query: 272 RTWRRLKKKLDEESITFGSEFQNY 295
             +R + +K    +++F +    Y
Sbjct: 685 NLFREMLQKGFATTLSFNTLIDGY 708



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 124/283 (43%), Gaps = 15/283 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI+G CK  +++ A   L  MI  G +PN  T+ +L+ G CR          E  + 
Sbjct: 282 YNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCR----------EHNMG 331

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ DEM  R + P   S+  +++         L+   L  M   G+ P V  YS+++
Sbjct: 332 RALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLI 391

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               S GRIE+A  LL  M  +GV P    YN              A     +++  GL 
Sbjct: 392 MGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGL- 450

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  ++   I  +    +M    + ++++   GL P+   YT+LI+G  +     EA  
Sbjct: 451 KPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALS 510

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKKK 280
            F  +   G+LP   T      GL+++    + L+ +  LK+K
Sbjct: 511 IFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEK 553



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 136/283 (48%), Gaps = 12/283 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +L+ G CK   I  A +    M E+G+EP+ VTY+ +++G C+           + +
Sbjct: 596 IYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCK----------SENV 645

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F EM  +G++P    ++ ++H   +    + +++    M +KG   T+ +++++
Sbjct: 646 AEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTL-SFNTL 704

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C   +I++A +L  EM+   + P   TY      +        A  L+++M+E  L
Sbjct: 705 IDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNL 764

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            V  + +Y  L+  +  L +   V  ++  +   G+ PD  +Y ++I+  C++    EA 
Sbjct: 765 IVDTV-TYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAF 823

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           +   E++ KG+L +    + L   L + + L    +L  ++ E
Sbjct: 824 KLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGE 866



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 123/277 (44%), Gaps = 44/277 (15%)

Query: 22  LGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81
           L  M E+G+ PN  TY ++  G+CR           K +  A+  F+EM+  G++PD  +
Sbjct: 197 LRSMGEKGLVPNTYTYTIITAGLCR----------AKRMNEAKLTFEEMQKTGLKPDYNA 246

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
            S ++  + R       L   + M   GI   + TY+ ++  LC  G++E A E+L  M+
Sbjct: 247 CSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMI 306

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE--------------DGLC------ 181
             G  P++ T+    + Y    +   A++L  +M++              +GLC      
Sbjct: 307 TLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLS 366

Query: 182 --------------VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
                          PN+  Y+ LI  + +  R++  R + + +  SG+ PD+  Y  +I
Sbjct: 367 LANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAII 426

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             L +  K +EA  Y +E+  +GL P  VTF     G
Sbjct: 427 SCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILG 463



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 123/276 (44%), Gaps = 12/276 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I G+CK   +  A     EM  +GV+P+   YN L++G C+          E  + 
Sbjct: 632 YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCK----------EGDME 681

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM  +G    + SF+ ++  Y ++ + Q +      M  K I P   TY++V+
Sbjct: 682 KAMNLFREMLQKGFATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVI 740

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++E+A  L  EM    +     TY      Y     ++    L+ +M   G+ 
Sbjct: 741 DWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGV- 799

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y ++I      + +    ++ ++V G G+      + +LI  LC+++   EA +
Sbjct: 800 KPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASK 859

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
              EM E GL P      TL R   ++  +    R+
Sbjct: 860 LLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRV 895



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 11/228 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G+CK  +I  A +   EMI + + P+ VTY  +++  C+   +           
Sbjct: 701 FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKM----------E 750

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM+ R +  D  +++ +++ Y++  Q          M  KG+ P   TY  V+
Sbjct: 751 EANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVI 810

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    + +A +L  E+V  G+      ++        R+D   A KL  +M E GL 
Sbjct: 811 YAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGL- 869

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
            P++ + + L+  F    +MD    ++  VK  GL PD  +   L++G
Sbjct: 870 KPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNG 917



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 1/182 (0%)

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           + L  M EKG+ P   TY+ +   LC   R+ +A+    EM + G+ P     +     +
Sbjct: 195 NSLRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGF 254

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
               D +  +++   M   G+ + N+ +YN+LI       +M+   EI   +   G  P+
Sbjct: 255 MREGDIDEVLRIKDVMVSCGIPI-NLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPN 313

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
             ++ +LI G C +     A +   EM ++ L+P  V++  +  GL     L    +L +
Sbjct: 314 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE 373

Query: 280 KL 281
           K+
Sbjct: 374 KM 375


>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
 gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 323

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 137/272 (50%), Gaps = 13/272 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRAS-LHPSERFEKTI 60
           Y ++I G CK+   + A   L +M E  ++ +VV YN +++ +C+    +H         
Sbjct: 44  YGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIH--------- 94

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+ +F EM  +GI PDV ++S ++  + R+ +   +   L  M E+ I P V T+S++
Sbjct: 95  --AQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSAL 152

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L   G++ +AEE+ G+M+R G+ P+  TYN     +  +   N A ++   M     
Sbjct: 153 INALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKS- 211

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P++ +++ LI  +    R+D   EI+ ++   G+  +  +YT LIHG C+      A 
Sbjct: 212 CSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQ 271

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
                MI  G+ P  +TF+++   L     LR
Sbjct: 272 DLLNVMISSGVAPNYITFQSMLASLCSKKELR 303



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 120/239 (50%), Gaps = 11/239 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I   CK      A+    EM ++G+ P+V+TY+ +++  CR      S R+    
Sbjct: 78  IYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCR------SGRW---- 127

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +AE++  +M  R I PDV +FS +++   +  +   + +    M  +GI PT  TY+S+
Sbjct: 128 TDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSM 187

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C   R+ DA+ +L  M      P   T++     Y   K  +  M+++ +M   G+
Sbjct: 188 IDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGI 247

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            V N  +Y  LI  F  +  +D  +++ N +  SG+ P+  ++  ++  LC K++ ++A
Sbjct: 248 -VANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKA 305



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 90/176 (51%), Gaps = 10/176 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++LI    K  ++  AE   G+M+ RG+ P  +TYN +++G C++  L+          
Sbjct: 149 FSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLN---------- 198

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A+++ D M  +   PDV +FS +++ Y +A +    ++    M  +GI     TY++++
Sbjct: 199 DAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLI 258

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
              C  G ++ A++LL  M+ +GV P+  T+         +K+   A  +   +++
Sbjct: 259 HGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQK 314



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 15/240 (6%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M+E G  P+VVT+  L+NG+C           E  +  A  + D M   G +P    +  
Sbjct: 1   MVETGCRPDVVTFTTLMNGLC----------CEGRVLQALALVDRMVEEGHQP----YGT 46

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           +++   +    + +L+ L+ M+E  I   V  Y++++  LC  G    A+ L  EM   G
Sbjct: 47  IINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKG 106

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           + P   TY+     +        A +L R M E  +  P++ +++ LI   +   ++   
Sbjct: 107 IFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQI-NPDVVTFSALINALVKEGKVSEA 165

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            EI+ D+   G+ P   +Y  +I G C++ +  +A +    M  K   P  VTF TL  G
Sbjct: 166 EEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLING 225



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 75/142 (52%), Gaps = 10/142 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G+CK +R++ A+R L  M  +   P+VVT++ L+NG C+           K + 
Sbjct: 184 YNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCK----------AKRVD 233

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N  ++F EM  RGI  +  +++ ++H + +      + D LN M   G+ P   T+ S++
Sbjct: 234 NGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSML 293

Query: 122 KCLCSCGRIEDAEELLGEMVRN 143
             LCS   +  A  +L ++ ++
Sbjct: 294 ASLCSKKELRKAFAILEDLQKS 315



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 103/227 (45%), Gaps = 10/227 (4%)

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           G  PDV +F+ +++      +   +L  ++ M E+G  P    Y +++  LC  G  E A
Sbjct: 5   GCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESA 60

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             LL +M    +      YN              A  L+ +M + G+  P++ +Y+ +I 
Sbjct: 61  LNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGI-FPDVITYSGMID 119

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
            F    R     ++  D+    + PD+ +++ LI+ L ++ K  EA + + +M+ +G+ P
Sbjct: 120 SFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFP 179

Query: 254 QKVTFETLYRGLIQSDMLRTWRRLKKKLDEES-----ITFGSEFQNY 295
             +T+ ++  G  + D L   +R+   +  +S     +TF +    Y
Sbjct: 180 TTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGY 226



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI+G+C++  +D A+  L  MI  GV PN +T+  +L  +C +  L  +    + ++
Sbjct: 254 YTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQ 313

Query: 62  NAE 64
            +E
Sbjct: 314 KSE 316


>gi|356526063|ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 1 [Glycine max]
 gi|356526065|ref|XP_003531640.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 2 [Glycine max]
          Length = 522

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 125/252 (49%), Gaps = 11/252 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G+C      +A +    M+E GV+PNVVT+N L+NG C+   LH          
Sbjct: 263 FNTLISGYCNKGLFGLALKVKSLMVENGVQPNVVTFNTLINGFCKERKLH---------- 312

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +VF+EM+V  ++P V +++ +L+ Y +    ++ +     M   G+   + TY++++
Sbjct: 313 EANRVFNEMKVANVDPSVVTYNTLLNGYGQVGDSEMGVRVYEEMMRNGLKADILTYNALI 372

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+ + A   + E+ +  + P+A T++        R ++  A  +YR M   G C
Sbjct: 373 LGLCKDGKTKKAAGFVRELDKENLVPNASTFSALITGQCVRNNSERAFLIYRSMVRSG-C 431

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  ++ +LI  F      D   ++  D+ G  + PDL + + L  GLC   K + A  
Sbjct: 432 SPNGQTFQMLISAFCKNEDFDGAVQVLRDMLGRLMSPDLSTMSELCDGLCRCGKNQLALA 491

Query: 242 YFVEMIEKGLLP 253
              EM  + LLP
Sbjct: 492 LCSEMEVRRLLP 503



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 125/267 (46%), Gaps = 16/267 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV--CRRASLHPSERFEK 58
           ++ SL       N+   A      M E G  P V + N  L+ +   RRA +        
Sbjct: 156 VFDSLFKTLAHTNKFRHATHIYTLMKEHGFSPTVQSCNAFLSSLLRLRRADI-------- 207

Query: 59  TIRNAEKVFDEMRVRG-IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
               A   + E+R R  + P+V + ++++  Y    + Q   D L  M + G+ P V ++
Sbjct: 208 ----ALAFYREIRRRSCVSPNVYTLNMIIRAYCMLGEVQKGFDMLEKMMDMGLSPNVVSF 263

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           ++++   C+ G    A ++   MV NGV P+  T+N     +   +  + A +++ +MK 
Sbjct: 264 NTLISGYCNKGLFGLALKVKSLMVENGVQPNVVTFNTLINGFCKERKLHEANRVFNEMKV 323

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
             +  P++ +YN L+  +  +   +M   ++ ++  +GL  D+ +Y  LI GLC+  K K
Sbjct: 324 ANV-DPSVVTYNTLLNGYGQVGDSEMGVRVYEEMMRNGLKADILTYNALILGLCKDGKTK 382

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRG 264
           +A  +  E+ ++ L+P   TF  L  G
Sbjct: 383 KAAGFVRELDKENLVPNASTFSALITG 409



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 117/267 (43%), Gaps = 12/267 (4%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           + +    ++ R D+A  F  E+  R  V PNV T N+++   C    +      +K    
Sbjct: 194 AFLSSLLRLRRADIALAFYREIRRRSCVSPNVYTLNMIIRAYCMLGEV------QKGFDM 247

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
            EK+ D     G+ P+V SF+ ++  Y       L+L   + M E G+ P V T+++++ 
Sbjct: 248 LEKMMD----MGLSPNVVSFNTLISGYCNKGLFGLALKVKSLMVENGVQPNVVTFNTLIN 303

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C   ++ +A  +  EM    V PS  TYN     Y    D+   +++Y +M  +GL  
Sbjct: 304 GFCKERKLHEANRVFNEMKVANVDPSVVTYNTLLNGYGQVGDSEMGVRVYEEMMRNGLKA 363

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
            ++ +YN LI       +         ++    L P+  +++ LI G C +   + A   
Sbjct: 364 -DILTYNALILGLCKDGKTKKAAGFVRELDKENLVPNASTFSALITGQCVRNNSERAFLI 422

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSD 269
           +  M+  G  P   TF+ L     +++
Sbjct: 423 YRSMVRSGCSPNGQTFQMLISAFCKNE 449



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/294 (20%), Positives = 135/294 (45%), Gaps = 12/294 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNG--VCRRASLHPSERFEKT 59
           ++ L++   K  +    ++FL + +     P    ++ LL    +C  +S    +   KT
Sbjct: 106 HSILLHTLSKHRQFKTTQKFLTQTLSS--HPPHTLFDALLFSYRLCNSSSPLVFDSLFKT 163

Query: 60  I------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG-ICP 112
           +      R+A  ++  M+  G  P V S +  L    R  +  ++L     ++ +  + P
Sbjct: 164 LAHTNKFRHATHIYTLMKEHGFSPTVQSCNAFLSSLLRLRRADIALAFYREIRRRSCVSP 223

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
            V T + +++  C  G ++   ++L +M+  G+ P+  ++N     Y  +     A+K+ 
Sbjct: 224 NVYTLNMIIRAYCMLGEVQKGFDMLEKMMDMGLSPNVVSFNTLISGYCNKGLFGLALKVK 283

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
             M E+G+  PN+ ++N LI  F    ++     ++N++K + + P + +Y  L++G  +
Sbjct: 284 SLMVENGV-QPNVVTFNTLINGFCKERKLHEANRVFNEMKVANVDPSVVTYNTLLNGYGQ 342

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
               +   + + EM+  GL    +T+  L  GL +    +      ++LD+E++
Sbjct: 343 VGDSEMGVRVYEEMMRNGLKADILTYNALILGLCKDGKTKKAAGFVRELDKENL 396



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 97/236 (41%), Gaps = 21/236 (8%)

Query: 81  SFSIVLHVYSR----------------AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           + SI+LH  S+                +H P    D L F        +   + S+ K L
Sbjct: 105 THSILLHTLSKHRQFKTTQKFLTQTLSSHPPHTLFDALLFSYRLCNSSSPLVFDSLFKTL 164

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
               +   A  +   M  +G  P+ ++ N F       + A+ A+  YR+++      PN
Sbjct: 165 AHTNKFRHATHIYTLMKEHGFSPTVQSCNAFLSSLLRLRRADIALAFYREIRRRSCVSPN 224

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           +++ N++I  +  L  +    ++   +   GL P++ S+  LI G C K  +  A +   
Sbjct: 225 VYTLNMIIRAYCMLGEVQKGFDMLEKMMDMGLSPNVVSFNTLISGYCNKGLFGLALKVKS 284

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDML----RTWRRLK-KKLDEESITFGSEFQNY 295
            M+E G+ P  VTF TL  G  +   L    R +  +K   +D   +T+ +    Y
Sbjct: 285 LMVENGVQPNVVTFNTLINGFCKERKLHEANRVFNEMKVANVDPSVVTYNTLLNGY 340


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT ++   CK  R+  A   L EMI  G  P ++T+N L++G CR          EK +
Sbjct: 119 MYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCR----------EKNL 168

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+ +  +M   G++ DV +++ ++    +A + Q +   L  MK  G  P V  YSS 
Sbjct: 169 EMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSF 228

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  LC  G++ DA ++L +M  +   P+  TYN            + A+++  QM     
Sbjct: 229 VYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDG 288

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C  N+  Y+ ++     L R    R +   +  +G  PD+ +Y+ L++GLC+  K +EA 
Sbjct: 289 CGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAV 348

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +   EM  +G  P  VT+ +L  GL     L    R+ +++
Sbjct: 349 EAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEM 389



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 141/282 (50%), Gaps = 13/282 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L+ G+ K  R    ER L  M  R ++PNVV+YN LL G+C+    H          
Sbjct: 13  FNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWH---------- 62

Query: 62  NAEKVFDEMRVRG--IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
            AE++  +M  RG    PD+ ++S +L  Y +A + + S + L  +  +G+ P    Y+ 
Sbjct: 63  EAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTK 122

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           VV  LC   R+ +A ELL EM+R G CP+  T+N         K+   A  L ++M   G
Sbjct: 123 VVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASG 182

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +   ++ +YN L+       R+    ++   +K SG  PD+ +Y+  ++GLC+  K  +A
Sbjct: 183 V-KADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDA 241

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            Q   +M +    P  VT+ T+  GL +S  + T   + +++
Sbjct: 242 HQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQM 283



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 13/242 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S +YG CK  ++  A + L +M +   +PNVVTYN +L+G+C+   +  +    + + 
Sbjct: 225 YSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMA 284

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +++         G   +V  +S V+    +  + Q +   +  M   G  P V TYSS+V
Sbjct: 285 SSD---------GCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLV 335

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
             LC  G+IE+A E + EM   G  P+A TY               A ++  +M   G  
Sbjct: 336 NGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGG 395

Query: 181 ---CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
              C P++ +YN LIG      R+D   + +  ++  G  PD  SY+ ++ GL    +  
Sbjct: 396 GHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRAL 455

Query: 238 EA 239
           +A
Sbjct: 456 QA 457



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 36/231 (15%)

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           G  P+  +F+ +++ +S+  +P      L  M  + I P V +Y+ +++ LC   R  +A
Sbjct: 5   GCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEA 64

Query: 134 EELLGEMVRNG--VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL----------- 180
           EEL+ +M+  G    P   TY+     Y        + +L +++   GL           
Sbjct: 65  EELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVV 124

Query: 181 -----------------------CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
                                  C P + ++N LI        ++M   +   +  SG+ 
Sbjct: 125 ASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVK 184

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            D+ +Y  L+ GLC+  + +EA Q    M   G  P  V + +   GL +S
Sbjct: 185 ADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKS 235



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SL+ G CK  +I+ A   + EM   G +PN VTY  L++G+C    L  +ER  +   
Sbjct: 331 YSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVE--- 387

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             E            P V++++ ++    +A +   +L     M+ +G  P   +YS++V
Sbjct: 388 --EMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIV 445

Query: 122 KCLCSCGRIEDAEELLGEM 140
           + L   GR   AE +L E+
Sbjct: 446 EGLARSGRALQAEMILSEV 464



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK  RID A +F   M  +G +P+ V+Y+ ++ G+ R      +E     +R
Sbjct: 406 YNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEVR 465


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 130/267 (48%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G+ K+ R+D    F  EM +   EP+V+TYN L+N  C+   L     F     
Sbjct: 168 YNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEF----- 222

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                + EM+  G++P+V S+S ++  + +    Q ++     M+  G+ P   TY+S++
Sbjct: 223 -----YREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLI 277

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + DA  L  EM++ GV  +  TY          +    A +L+ +M   G+ 
Sbjct: 278 DANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGV- 336

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+ SYN LI  F+    MD   E+ N++KG G+ PDL  Y   I GLC  +K + A  
Sbjct: 337 IPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKV 396

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
              EM E G+    + + TL     +S
Sbjct: 397 VMNEMKECGIKANSLIYTTLMDAYFKS 423



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 145/286 (50%), Gaps = 18/286 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI   CKI  +  A R   EM++ GVE NVVTY  L++G+C       +ER    ++
Sbjct: 273 YTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLC------DAER----MK 322

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE++F +M   G+ P++ S++ ++H + +A     +L+ LN +K +GI P +  Y + +
Sbjct: 323 EAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFI 382

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LCS  +IE A+ ++ EM   G+  ++  Y      Y    +    + L  +MKE  + 
Sbjct: 383 WGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIE 442

Query: 182 VPNMHSYNILIGMF----MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
           V  + ++ +LI       +    +D    I ND    GL  +   +T +I GLC+  + +
Sbjct: 443 V-TVVTFCVLIDGLCKNKLVSKAVDYFNRISNDF---GLQANAAIFTAMIDGLCKDNQVE 498

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            A   F +M++KGL+P +  + +L  G  +   +     L+ K+ E
Sbjct: 499 AATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAE 544



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 137/267 (51%), Gaps = 17/267 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L++ + K+ + D  +RF  +MI  G  P V TYN++++ +C+          E  +  A 
Sbjct: 101 LLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCK----------EGDVEAAR 150

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE-KGIC--PTVATYSSVV 121
            +F+EM+ RG+ PD  +++ ++  + +  +     D + F +E K +C  P V TY++++
Sbjct: 151 GLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLD---DTVCFFEEMKDMCCEPDVITYNALI 207

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            C C  G++    E   EM  NG+ P+  +Y+     +        A+K Y  M+  GL 
Sbjct: 208 NCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL- 266

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN ++Y  LI     +  +     + N++   G+  ++ +YT LI GLC+ ++ KEA +
Sbjct: 267 VPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEE 326

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F +M   G++P   ++  L  G +++
Sbjct: 327 LFGKMDTAGVIPNLASYNALIHGFVKA 353



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 132/270 (48%), Gaps = 11/270 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI  +CK  ++ +   F  EM   G++PNVV+Y+ L++  C+          E  ++
Sbjct: 203 YNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCK----------EGMMQ 252

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K + +MR  G+ P+  +++ ++    +      +    N M + G+   V TY++++
Sbjct: 253 QAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALI 312

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R+++AEEL G+M   GV P+  +YN     +   K+ + A++L  ++K  G+ 
Sbjct: 313 DGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGI- 371

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  Y   I    +L +++  + + N++K  G+  +   YT L+    +     E   
Sbjct: 372 KPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLH 431

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              EM E  +    VTF  L  GL ++ ++
Sbjct: 432 LLDEMKELDIEVTVVTFCVLIDGLCKNKLV 461



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 7/205 (3%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE---KGICPTVAT 116
           +  A + F +M+   + P   S + +LH +++  +     D   F K+    G  PTV T
Sbjct: 76  LEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTD---DVKRFFKDMIGAGARPTVFT 132

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+ ++ C+C  G +E A  L  EM   G+ P   TYN     +      +  +  + +MK
Sbjct: 133 YNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMK 192

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
            D  C P++ +YN LI  F    ++ +  E + ++KG+GL P++ SY+ L+   C++   
Sbjct: 193 -DMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMM 251

Query: 237 KEACQYFVEMIEKGLLPQKVTFETL 261
           ++A +++V+M   GL+P + T+ +L
Sbjct: 252 QQAIKFYVDMRRVGLVPNEYTYTSL 276



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 123/257 (47%), Gaps = 14/257 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G+ K   +D A   L E+  RG++P+++ Y   + G+C           EK I 
Sbjct: 343 YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCS---------LEK-IE 392

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ V +EM+  GI+ +   ++ ++  Y ++  P   L  L+ MKE  I  TV T+  ++
Sbjct: 393 AAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLI 452

Query: 122 KCLCSCGRIEDAEELLGEMVRN-GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             LC    +  A +    +  + G+  +A  +               A  L+ QM + GL
Sbjct: 453 DGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL 512

Query: 181 CVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            VP+  +Y  L+ G F   N ++ +  + + +   G+  DL +YT L+ GL    + ++A
Sbjct: 513 -VPDRTAYTSLMDGNFKQGNVLEAL-ALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKA 570

Query: 240 CQYFVEMIEKGLLPQKV 256
             +  EMI +G+ P +V
Sbjct: 571 RSFLEEMIGEGIHPDEV 587



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 102/220 (46%), Gaps = 12/220 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y + I+G C + +I+ A+  + EM E G++ N + Y  L++   +  S +P+E      
Sbjct: 377 LYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFK--SGNPTEGLH--- 431

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK-GICPTVATYSS 119
                + DEM+   IE  V +F +++    +      ++D  N +    G+    A +++
Sbjct: 432 -----LLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTA 486

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC   ++E A  L  +MV+ G+ P    Y         + +   A+ L  +M E G
Sbjct: 487 MIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIG 546

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
           + + ++ +Y  L+      N++   R    ++ G G+ PD
Sbjct: 547 MKL-DLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPD 585



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 16/176 (9%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV---------------RNGVCPSA 149
           M   G   +V +Y  V   L       DA  +L EMV               RN   P  
Sbjct: 1   MTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWSTRNVCVPGF 60

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
             ++  F           A++ + +MK   +  P   S N L+  F  L + D V+  + 
Sbjct: 61  GVFDALFSVLIDLGMLEEAIQCFSKMKRFRV-FPKTRSCNGLLHRFAKLGKTDDVKRFFK 119

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           D+ G+G  P + +Y ++I  +C++   + A   F EM  +GL+P  VT+ ++  G 
Sbjct: 120 DMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGF 175


>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
          Length = 332

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 142/286 (49%), Gaps = 13/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRAS-LHPSERFEKTI 60
           Y ++I G CK+   + A   L +M E  ++ +VV YN +++ +C+    +H         
Sbjct: 44  YGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIH--------- 94

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+ +F EM  +GI PDV ++S ++  + R+ +   +   L  M E+ I P V T+S++
Sbjct: 95  --AQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSAL 152

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L   G++ +AEE+ G+M+R G+ P+  TYN     +  +   N A ++   M     
Sbjct: 153 INALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKS- 211

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P++ +++ LI  +    R+D   EI+ ++   G+  +  +YT LIHG C+      A 
Sbjct: 212 CSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQ 271

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
                MI  G+ P  +TF+++   L     LR    + + L +  +
Sbjct: 272 DLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQKSEV 317



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 127/256 (49%), Gaps = 11/256 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I   CK      A+    EM ++G+ P+V+TY+ +++  CR      S R+    
Sbjct: 78  IYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCR------SGRWT--- 128

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +AE++  +M  R I PDV +FS +++   +  +   + +    M  +GI PT  TY+S+
Sbjct: 129 -DAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSM 187

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C   R+ DA+ +L  M      P   T++     Y   K  +  M+++ +M   G+
Sbjct: 188 IDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGI 247

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            V N  +Y  LI  F  +  +D  +++ N +  SG+ P+  ++  ++  LC K++ ++A 
Sbjct: 248 -VANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAF 306

Query: 241 QYFVEMIEKGLLPQKV 256
               ++ +  + P+ V
Sbjct: 307 AILEDLQKSEVCPRIV 322



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 15/240 (6%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M+E G  P+VVT+  L+NG+C           E  +  A  + D M   G +P    +  
Sbjct: 1   MVETGCRPDVVTFTTLMNGLC----------CEGRVLQALALVDRMVEEGHQP----YGT 46

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           +++   +    + +L+ L+ M+E  I   V  Y++++  LC  G    A+ L  EM   G
Sbjct: 47  IINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKG 106

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           + P   TY+     +        A +L R M E  +  P++ +++ LI   +   ++   
Sbjct: 107 IFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQI-NPDVVTFSALINALVKEGKVSEA 165

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            EI+ D+   G+ P   +Y  +I G C++ +  +A +    M  K   P  VTF TL  G
Sbjct: 166 EEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLING 225



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 103/227 (45%), Gaps = 10/227 (4%)

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           G  PDV +F+ +++      +   +L  ++ M E+G  P    Y +++  LC  G  E A
Sbjct: 5   GCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESA 60

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             LL +M    +      YN              A  L+ +M + G+  P++ +Y+ +I 
Sbjct: 61  LNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGI-FPDVITYSGMID 119

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
            F    R     ++  D+    + PD+ +++ LI+ L ++ K  EA + + +M+ +G+ P
Sbjct: 120 SFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFP 179

Query: 254 QKVTFETLYRGLIQSDMLRTWRRLKKKLDEES-----ITFGSEFQNY 295
             +T+ ++  G  + D L   +R+   +  +S     +TF +    Y
Sbjct: 180 TTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGY 226


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 140/296 (47%), Gaps = 27/296 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKTI 60
           +TSLI G CK   I  A   L EM+  G +PNV T+  L++G+C+R     + R F K +
Sbjct: 313 FTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLV 372

Query: 61  RN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           R+                         AE +F  M+ +G+ P+V +++ +++ + +A   
Sbjct: 373 RSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNF 432

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             + + +N M ++G  P + TY++V+  LC   R  +A ELL +    G+     TY   
Sbjct: 433 DRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTIL 492

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            +E   + D   A+  + +M + G    +M   NILI  F    +M     ++  V   G
Sbjct: 493 IQEQCKQSDIKQALAFFCRMNKTGF-EADMRLNNILIAAFCRQKKMKESERLFQLVVSLG 551

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           L P  ++YT +I G C++  +  A +YF  M   G +P   T+ +L  GL +  M+
Sbjct: 552 LVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMV 607



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 118/251 (47%), Gaps = 10/251 (3%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           ID AE    EM  RGV P+  ++ +++ G  R   +  ++R+             M  RG
Sbjct: 221 IDYAENVFDEMSVRGVCPDSSSFKLMVIGCFRDGKIQEADRW----------LSGMIQRG 270

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
             PD  + +++L           ++     M + G  P +  ++S++  LC  G I+ A 
Sbjct: 271 FIPDNATCTLILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAF 330

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           E+L EMVRNG  P+  T+         R     A +L+ ++    +  PN+H+Y  +IG 
Sbjct: 331 EMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGG 390

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
           +   ++++    +++ +K  GL P++++YT LI+G C+   +  A +    M ++G  P 
Sbjct: 391 YCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPN 450

Query: 255 KVTFETLYRGL 265
             T+  +   L
Sbjct: 451 IYTYNAVIDSL 461



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 127/293 (43%), Gaps = 36/293 (12%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++  + +I R++ A   + +M  +G+ P+ +T N +L                  I  AE
Sbjct: 176 MLRNFSEIGRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESG----------LIDYAE 225

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            VFDEM VRG+ PD +SF +++    R  + Q +   L+ M ++G  P  AT + ++  L
Sbjct: 226 NVFDEMSVRGVCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSAL 285

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G +  A     +M+  G  P+   +         +     A ++  +M  +G   PN
Sbjct: 286 CENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGW-KPN 344

Query: 185 MHSYNILIG-------------MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
           ++++  LI              +F+ L R D+ +            P++ +YT +I G C
Sbjct: 345 VYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYK------------PNVHTYTSMIGGYC 392

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
           ++ K   A   F  M E+GL P   T+ TL  G  ++        L   +D+E
Sbjct: 393 KEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDE 445



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 128/324 (39%), Gaps = 58/324 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRAS---------LHP 52
           YTS+I G+CK ++++ AE     M E+G+ PNV TY  L+NG C+  +         L  
Sbjct: 384 YTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMD 443

Query: 53  SERFEKTIRNAEKVFDEMRVR----------------GIEPDVTSFSIVLHVYSRAHQPQ 96
            E F   I     V D +  +                G+E D  +++I++    +    +
Sbjct: 444 DEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIK 503

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L     M + G    +   + ++   C   +++++E L   +V  G+ P+ ETY    
Sbjct: 504 QALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMI 563

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y    D + A+K +  MK  G CVP+  +Y  LI      + +D   +++  +   GL
Sbjct: 564 SGYCKEGDFDLALKYFHNMKRHG-CVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGL 622

Query: 217 GPD--------------------------------LDSYTMLIHGLCEKQKWKEACQYFV 244
            P                                 + +   L+  LC ++K   A  +F 
Sbjct: 623 SPPEVTRVTLAYEYCKRNDSASAMIVLEPLDKKLWIRTVRTLVRKLCSEKKVGVAALFFQ 682

Query: 245 EMIEKGLLPQKVTFETLYRGLIQS 268
           +++EK     +VT         +S
Sbjct: 683 KLLEKDSSADRVTLAAFTTACSES 706



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 7/185 (3%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M+ +G+ P+  T + V++     G I+ AE +  EM   GVCP + ++            
Sbjct: 196 MQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSFKLMVIGCFRDGK 255

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV-REIWNDVKGSGLG--PDLD 221
              A +    M + G  +P+  +  +++    AL    +V R IW   K   LG  P+L 
Sbjct: 256 IQEADRWLSGMIQRGF-IPDNATCTLILS---ALCENGLVNRAIWYFRKMIDLGFKPNLI 311

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           ++T LI GLC+K   K+A +   EM+  G  P   T   L  GL +        RL  KL
Sbjct: 312 NFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKL 371

Query: 282 DEESI 286
               I
Sbjct: 372 VRSDI 376


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 133/303 (43%), Gaps = 44/303 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+C++  +  A R   EM+E+G  P+V TY +L+NG           R  + + 
Sbjct: 416 YNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNG----------SRKVRNLA 465

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A + FDEM  +G++PD  +++  +          ++      M  KGI P   TY+ ++
Sbjct: 466 MAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVII 525

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
             LC  G ++DA+ L  +MV +G+ P   TY C    +  R     A KL   M  DGL 
Sbjct: 526 DGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMVSDGLQ 585

Query: 181 ------------CV---------------------PNMHSYNILIGMFMALNRMDMVREI 207
                       C                      PN  +YN+LI       R  +    
Sbjct: 586 PSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFRH 645

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           ++++   GL P+  +YT+LI G C +  W +A + + EM + G+ P   T   L++G  +
Sbjct: 646 FHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGFDE 705

Query: 268 SDM 270
             M
Sbjct: 706 GHM 708



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 133/276 (48%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI    +   +  AE    EM   G+ P VVTYN +++G+ +       E+ E    
Sbjct: 311 YNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLK------CEQAEA--- 361

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+  F EMR  G+ PDV +++ +L+ Y +A   + +L  L  ++  G+ PTV TY++++
Sbjct: 362 -AQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLI 420

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + +A  L  EMV  G  P   TY       R  ++   A + + +M   GL 
Sbjct: 421 DGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGL- 479

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN  I   + L+   M  ++   +   G+ PD  +Y ++I GLC+    K+A +
Sbjct: 480 QPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKR 539

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
              +M+  GL P  +T+  L     +  +LR  R+L
Sbjct: 540 LKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKL 575



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 142/311 (45%), Gaps = 27/311 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG--VEPNVVTYNVLLNGVCRRASLH------PS 53
           Y +L+  + K  R D A   L EM  +G     N VT+NV+++ + R   L        S
Sbjct: 240 YNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDS 299

Query: 54  ERFEKT------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
            R  K                   +R AE +  EM   GI P V +++ ++H   +  Q 
Sbjct: 300 MRLSKKASSFTYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQA 359

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + +  K   M+  G+ P V TY+S++   C  G +++A  LLG++ R G+ P+  TYN  
Sbjct: 360 EAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTL 419

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y    D   A +L  +M E G C P++ +Y IL+     +  + M RE ++++   G
Sbjct: 420 IDGYCRLGDLAEARRLKEEMVEQG-CFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKG 478

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           L PD  +Y   I           A Q    M+ KG+ P  VT+  +  GL ++  L+  +
Sbjct: 479 LQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAK 538

Query: 276 RLKKKLDEESI 286
           RLK K+  + +
Sbjct: 539 RLKTKMVSDGL 549



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 4/175 (2%)

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           L L     +   G+ P V   + V++ L    R +D   + GEM++  V P+  TYN   
Sbjct: 185 LCLAAFRLVTCHGVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLL 244

Query: 157 KEY--RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
             +   GRKD   +M L     + G    N  ++N++I        ++   ++ + ++ S
Sbjct: 245 DSFLKEGRKD-EASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMRLS 303

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
                  +Y  LI  L E+   ++A    +EM  +G++P  VT+  +  GL++ +
Sbjct: 304 KKASSF-TYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCE 357


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 145/293 (49%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+ K   +D A     EM++RG+ PNVVTY+ ++  +C+           + + 
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCK----------AQAMD 251

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V   M   G+ P+  +++ ++H Y  + QP+ ++  L  M   G+ P V TY+S++
Sbjct: 252 KAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLM 311

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A ++   M + G+ P   TY    + Y  +        L   M  +G+ 
Sbjct: 312 DYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI- 370

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN + ++ILI  +    ++D    +++ ++  GL PD  +Y  +I  LC+  + ++A +
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           YF +MI++ L P  + + +L   L   D     + L  ++ +  I   + F N
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFN 483



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 138/297 (46%), Gaps = 19/297 (6%)

Query: 2   YTSLIYGWCKINRI-DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +T L+ G C   R  D  +  L  M + G  PNV +YN+LL G+C           E   
Sbjct: 129 FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCD----------ENRS 178

Query: 61  RNAEKVFDEMRVRGIE--PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           + A ++   M   G +  PDV S++ V++ + +      +    + M ++GI P V TYS
Sbjct: 179 QEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYS 238

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           S++  LC    ++ A E+L  MV+NGV P+  TYN     Y        A+   ++M  D
Sbjct: 239 SIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSD 298

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P++ +YN L+       R    R++++ +   GL P++ +Y  L+ G   K    E
Sbjct: 299 GV-EPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357

Query: 239 ACQYFVEMIEKGLLPQKVTFETLY-----RGLIQSDMLRTWRRLKKKLDEESITFGS 290
                  M+  G+ P    F  L      +G +   ML   +  ++ L+ +++T+G+
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGT 414



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 138/304 (45%), Gaps = 58/304 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+++G+C   +   A  FL +M   GVEP+VVTYN L++ +C+               
Sbjct: 272 YNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGR----------CT 321

Query: 62  NAEKVFDEMRVRGIEPDVTS-----------------------------------FSIVL 86
            A K+FD M  RG++P++T+                                   FSI++
Sbjct: 322 EARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI 381

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
             Y++  +   ++   + M+++G+ P   TY +V+  LC  GR+EDA     +M+   + 
Sbjct: 382 CAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLS 441

Query: 147 PSAETYN------CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
           P    YN      C F ++      + A +L  +M + G+C+  +  +N +I       R
Sbjct: 442 PGNIVYNSLIHSLCIFDKW------DKAKELILEMLDRGICLDTIF-FNSIIDSHCKEGR 494

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           +    ++++ +   G+ PD+ +Y+ LI G C   K  EA +    M+  G+ P  VT+ T
Sbjct: 495 VIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNT 554

Query: 261 LYRG 264
           L  G
Sbjct: 555 LING 558



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 154/347 (44%), Gaps = 58/347 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SLI+  C  ++ D A+  + EM++RG+  + + +N +++  C+          E  +
Sbjct: 446 VYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCK----------EGRV 495

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             +EK+FD M   G++PD+ ++S ++  Y  A +   +   L  M   G+ P   TY+++
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG- 179
           +   C   R+EDA  L  EM  +GV P   TYN   +     +    A +LY  + E G 
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT 615

Query: 180 -----------------------------LCVPNMH----SYNILIGMFMALNRMDMVRE 206
                                        LC+ ++     ++NI+IG  + + R D  ++
Sbjct: 616 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKD 675

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++  +  +GL PD+ +Y+++   L E+   +E    F+ M E G         ++ R L+
Sbjct: 676 LFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLL 735

Query: 267 Q-SDMLRTWRRL----KKKLDEESITF--------GSEFQNYH-FKP 299
           Q  D+ R    L    +K    E+ T         G ++Q YH F P
Sbjct: 736 QRGDITRAGTYLFMIDEKHFSLEASTASLFLDLLSGGKYQEYHRFLP 782



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 135/292 (46%), Gaps = 26/292 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKT 59
           +++ LI  + K  ++D A     +M ++G+ P+ VTY  ++  +C+   +  + R FE+ 
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 60  I------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           I                          A+++  EM  RGI  D   F+ ++  + +  + 
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             S    + M   G+ P + TYS+++   C  G++++A +LL  MV  G+ P   TYN  
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y        A+ L+R+M+  G+  P++ +YNI++       R    +E++  +  SG
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVS-PDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +L +Y +++HGLC+     EA + F  +    L  +  TF  +   L++
Sbjct: 615 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 666



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 125/281 (44%), Gaps = 27/281 (9%)

Query: 30  VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89
           V PN+ TY +L+   C    L   +     + N  K       +G   D  +F+ +L   
Sbjct: 87  VTPNLCTYGILIGSCCCAGRL---DLGFAALGNVIK-------KGFRVDAIAFTPLLKGL 136

Query: 90  SRAHQPQLSLD-KLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV-CP 147
               +   ++D  L  M + G  P V +Y+ ++K LC   R ++A ELL  M  +G  CP
Sbjct: 137 CADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCP 196

Query: 148 S-----AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202
                     N FFKE     D + A   Y +M + G+ +PN+ +Y+ +I        MD
Sbjct: 197 PDVVSYTTVINGFFKE----GDLDKAYGTYHEMLDRGI-LPNVVTYSSIIAALCKAQAMD 251

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
              E+   +  +G+ P+  +Y  ++HG C   + KEA  +  +M   G+ P  VT+ +L 
Sbjct: 252 KAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLM 311

Query: 263 RGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNYHFK 298
             L ++      R++     K+ L  E  T+G+  Q Y  K
Sbjct: 312 DYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 108/218 (49%), Gaps = 12/218 (5%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG---ICPTVATYS 118
           +A  VFDE+  RG    +   +  L   +R H P  ++ + N M   G   + P + TY 
Sbjct: 37  DARHVFDELLRRGRGASIYGLNCALADVAR-HSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL-YRQMKE 177
            ++   C  GR++     LG +++ G    A  +    K     K  + AM +  R+M +
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 178 DGLCVPNMHSYNILIGMFMALNR----MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
            G C+PN+ SYNIL+      NR    +++++ + +D  G    PD+ SYT +I+G  ++
Sbjct: 156 LG-CIPNVFSYNILLKGLCDENRSQEALELLQMMPDD--GGDCPPDVVSYTTVINGFFKE 212

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
               +A   + EM+++G+LP  VT+ ++   L ++  +
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAM 250


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 140/283 (49%), Gaps = 11/283 (3%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +LI    +I  +++A     E+   GV  NV T N+++N +C+   +     F       
Sbjct: 205 ALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTF------- 257

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
                +++ +G+ PD+ +++ ++  YS     + + + +N M  KG  P V TY++V+  
Sbjct: 258 ---LSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVING 314

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC  G+ E A+E+  EM+R+G+ P + TY     E   + D     K++  M+   + VP
Sbjct: 315 LCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDV-VP 373

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++  ++ ++ +F     +D     +N VK +GL PD   YT+LI G C K     A    
Sbjct: 374 DLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLR 433

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            EM+++G     VT+ T+  GL +  ML    +L  ++ E ++
Sbjct: 434 NEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERAL 476



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 154/321 (47%), Gaps = 32/321 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF--EK 58
           +YT LI G+C+   I +A     EM+++G   +VVTYN +L+G+C+R  L  +++   E 
Sbjct: 412 IYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEM 471

Query: 59  T-----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           T                       ++NA ++F +M+ + I  DV +++ +L  + +    
Sbjct: 472 TERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDI 531

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             + +    M  K I PT  +YS +V  LCS G + +A  +  EM+   + P+    N  
Sbjct: 532 DTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSM 591

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD----MVREIWNDV 211
            K Y    +A+       +M  +G  VP+  SYN LI  F+    M     +V+++  + 
Sbjct: 592 IKGYCRSGNASDGESFLEKMISEGF-VPDCISYNTLIYGFVREENMSKAFGLVKKM--EE 648

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           +  GL PD+ +Y  ++HG C + + KEA     +MIE+G+ P + T+  +  G +  D L
Sbjct: 649 EQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNL 708

Query: 272 RTWRRLKKKLDEESITFGSEF 292
               R+  ++ +   +   +F
Sbjct: 709 TEAFRIHDEMLQRGFSPDDKF 729



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 135/302 (44%), Gaps = 46/302 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK  + + A+    EM+  G+ P+  TY  LL   C++            + 
Sbjct: 308 YNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGD----------VV 357

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             EKVF +MR R + PD+  FS ++ +++R+     +L   N +KE G+ P    Y+ ++
Sbjct: 358 ETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILI 417

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK------------------ 163
           +  C  G I  A  L  EM++ G      TYN        RK                  
Sbjct: 418 QGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALF 477

Query: 164 -----------------DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
                            +   AM+L+++MKE  + + ++ +YN L+  F  +  +D  +E
Sbjct: 478 PDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRL-DVVTYNTLLDGFGKVGDIDTAKE 536

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           IW D+    + P   SY++L++ LC K    EA + + EMI K + P  +   ++ +G  
Sbjct: 537 IWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYC 596

Query: 267 QS 268
           +S
Sbjct: 597 RS 598



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 87/180 (48%), Gaps = 1/180 (0%)

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           F +++  Y +A + + + +    ++ KG   ++   ++++  L   G +E A  +  E+ 
Sbjct: 168 FDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEIS 227

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
           R+GV  +  T N                    Q++E G+  P++ +YN LI  + +   M
Sbjct: 228 RSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGV-YPDIVTYNTLISAYSSKGLM 286

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   E+ N + G G  P + +Y  +I+GLC+  K++ A + F EM+  GL P   T+ +L
Sbjct: 287 EEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSL 346



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 90/204 (44%), Gaps = 1/204 (0%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           + +R A + F  +R +G    + + + ++    R    +L+      +   G+   V T 
Sbjct: 179 RKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTL 238

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + +V  LC  G++E     L ++   GV P   TYN     Y  +     A +L   M  
Sbjct: 239 NIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPG 298

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G   P +++YN +I       + +  +E++ ++  SGL PD  +Y  L+   C+K    
Sbjct: 299 KGFS-PGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVV 357

Query: 238 EACQYFVEMIEKGLLPQKVTFETL 261
           E  + F +M  + ++P  V F ++
Sbjct: 358 ETEKVFSDMRSRDVVPDLVCFSSM 381



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 82/166 (49%), Gaps = 18/166 (10%)

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVR-NGV---------------CPSAET-YNCF 155
           T  + S+++  L   GR+ DA+  L  M+R +GV               C S ++ ++  
Sbjct: 112 TSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLL 171

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            + Y   +    A + +  ++  G  V ++ + N LIG  + +  +++   ++ ++  SG
Sbjct: 172 IRTYVQARKLREAHEAFTLLRSKGFTV-SIDACNALIGSLVRIGWVELAWGVYQEISRSG 230

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +G ++ +  ++++ LC+  K ++   +  ++ EKG+ P  VT+ TL
Sbjct: 231 VGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTL 276


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 139/301 (46%), Gaps = 26/301 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           Y  +I   CK   ++ A   + +MIE G  P+VVTYN +++G+C+               
Sbjct: 83  YNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEME 142

Query: 47  RASLHPSERFEKTI----------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           R    P+ R   TI            A +VF EM  R I PD  S+ I++   ++A +  
Sbjct: 143 RLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLN 202

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      M + GI P+  TY+ V+  +C    +++A EL   M   G  PS  T+N   
Sbjct: 203 EAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILI 262

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +  R   + A +L ++M +DG  VP++ +Y+ LI    ++ R+D  R +  D+     
Sbjct: 263 DAHCKRGKMDEAFRLLKRMTDDGH-VPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQC 321

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P + +   LIHGLC+  + KEA +    M+  G  P  VT+ TL  G  ++      R 
Sbjct: 322 KPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARE 381

Query: 277 L 277
           L
Sbjct: 382 L 382



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 132/271 (48%), Gaps = 17/271 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI G C I R+D A   L +M++R  +P VVT N L++G+C+             I+
Sbjct: 293 YSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGR----------IK 342

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V D M   G  PDV +++ ++H + RA Q + + + L+ M  +G+ P V TY+++V
Sbjct: 343 EAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALV 402

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R+ +A  +  +M  +G  P+  TY      +      +G +KL+ +M   G+ 
Sbjct: 403 SGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGIS 462

Query: 182 VPNMHSYNILIGMFMALNR----MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            P+   Y  L        R    ++++RE    ++    G ++  Y   + GL +  K +
Sbjct: 463 -PDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEV--YRFAVDGLLDAGKME 519

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            A  +  +M+  G LP      +L  GL +S
Sbjct: 520 MALGFVRDMVRGGQLPAPERCASLVAGLCKS 550



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 134/286 (46%), Gaps = 12/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G  K  +++ A     +++  GV P+ V Y  L++G+C             +  
Sbjct: 13  YGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLC----------MANSFD 62

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F +M  RG  P   ++++++    +    + + D +  M E G  P V TY++V+
Sbjct: 63  DARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVM 122

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+E+A  L  EM R G  P+  ++N        +   + A +++ +M+   + 
Sbjct: 123 DGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDI- 181

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  SY ILI       +++   +++  +  SG+ P   +Y ++IHG+C      EA +
Sbjct: 182 PPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALE 241

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ-SDMLRTWRRLKKKLDEESI 286
            F  M  KG  P + TF  L     +   M   +R LK+  D+  +
Sbjct: 242 LFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHV 287



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 108/218 (49%), Gaps = 1/218 (0%)

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           M  R + PD  S+ I++   ++A +   + D    +   G+ P+   Y+S++  LC    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
            +DA EL  +M R G  PS  TYN        R     A  L ++M EDG  VP++ +YN
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGH-VPDVVTYN 119

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            ++       R++    ++N+++  G  P+  S+  +I GLC++ K  +ACQ F EM  +
Sbjct: 120 TVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAR 179

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            + P   ++  L  GL ++  L    +L +++ +  IT
Sbjct: 180 DIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGIT 217


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 141/301 (46%), Gaps = 11/301 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+G CK+  ++ A   L +MI R   PN VTYN L++ +C+          E  + 
Sbjct: 354 YNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCK----------ENQVE 403

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++   +  +GI PDV +F+ ++      +  +L+++    MK KG  P   TY+ ++
Sbjct: 404 EATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLI 463

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LCS GR+E+A  LL EM  +G   +  TYN     +   K    A +++ +M+  G+ 
Sbjct: 464 DSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGIS 523

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+ +YN LI       R++   ++ + +   GL PD  +Y  L+   C     K+A  
Sbjct: 524 -RNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAAD 582

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYR 301
               M   G  P  VT+ TL  GL ++  +    RL + +  + +    +  N   K   
Sbjct: 583 IVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALF 642

Query: 302 R 302
           R
Sbjct: 643 R 643



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 136/286 (47%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+L+ G+ +   ++ A R   +M+  G   + VT NVL++G C+          E  I 
Sbjct: 249 FTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCK----------EGRIE 298

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 DEM   G  PD  +F+ +++   R    + +L+ L+ M ++G  P + TY+S++
Sbjct: 299 EVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLI 358

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +E+A E+L +M+     P+  TYN              A +L R +   G+ 
Sbjct: 359 FGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGI- 417

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ ++N LI      N   +  E++ ++K  G  PD  +Y MLI  LC + + +EA  
Sbjct: 418 LPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALS 477

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              EM   G     VT+ TL  G  ++  +     +  +++ + I+
Sbjct: 478 LLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGIS 523



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 125/281 (44%), Gaps = 47/281 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK  RI+ AE    EM  +G+  NVVTYN L++G+C+           + + 
Sbjct: 494 YNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKN----------RRVE 543

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D+M + G++PD  +++ +L  + RA   + + D +  M   G  P   TY +++
Sbjct: 544 EAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLI 603

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+E A  LL  +   G+  + +TYN   K     K  + A++L+R+M E    
Sbjct: 604 LGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMME---- 659

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ-KWKEAC 240
                                            G  PD  +Y ++  GLC       EA 
Sbjct: 660 --------------------------------KGDPPDAVTYKVVFRGLCSGGGPIGEAV 687

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            + VEM +KG LP   +F  L  GL    M  T  +L  ++
Sbjct: 688 DFLVEMTDKGFLPDFSSFLMLAEGLCALSMEDTLIKLVNRV 728



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 131/296 (44%), Gaps = 19/296 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           LI  + K    D A   +  M E  G++ +  TYN LLN +     L          +  
Sbjct: 146 LIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKL----------KLV 195

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
           E V   M  RGI+PDVT+F+I++    RAHQ + ++  +  M   G+ P   T++++++ 
Sbjct: 196 EIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQG 255

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAE-TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
               G +  A  +  +MV  G CPS+  T N     Y         +    +M  +G   
Sbjct: 256 FIEEGNMNGALRIREQMVAAG-CPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGF-R 313

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+  ++N L+     +  +    EI + +   G  PD+ +Y  LI GLC+  + +EA + 
Sbjct: 314 PDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEI 373

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI-----TFGSEFQ 293
             +MI +   P  VT+ TL   L + + +     L + L  + I     TF S  Q
Sbjct: 374 LNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 429



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 96/228 (42%), Gaps = 25/228 (10%)

Query: 99  LDKLNFM-KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           LD L++  K+    P+   Y  V++ L   G       +L EM   G      T+    +
Sbjct: 89  LDLLDWASKQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIE 148

Query: 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
            Y   +  + A+ +   M+E+     +  +YN L+ + +  N++ +V  + + +   G+ 
Sbjct: 149 SYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIK 208

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           PD+ ++ +LI  LC   + + A     EM   GL P + TF TL +G I+   +    R+
Sbjct: 209 PDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRI 268

Query: 278 KKKL------------------------DEESITFGSEFQNYHFKPYR 301
           ++++                         EE ++F  E  N  F+P R
Sbjct: 269 REQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDR 316


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 145/293 (49%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+ K   +D A     EM++RG+ PNVVTY+ ++  +C+           + + 
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCK----------AQAMD 251

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V   M   G+ P+  +++ ++H Y  + QP+ ++  L  M   G+ P V TY+S++
Sbjct: 252 KAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLM 311

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A ++   M + G+ P   TY    + Y  +        L   M  +G+ 
Sbjct: 312 DYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI- 370

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN + ++ILI  +    ++D    +++ ++  GL PD  +Y  +I  LC+  + ++A +
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           YF +MI++ L P  + + +L   L   D     + L  ++ +  I   + F N
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFN 483



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 138/295 (46%), Gaps = 15/295 (5%)

Query: 2   YTSLIYGWCKINRI-DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +T ++ G C   R  D  +  L  M + G  PNV +YN+LL G+C         R ++ +
Sbjct: 129 FTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLC------DDNRSQEAL 182

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              + + D+       PDV S++ V++ + +      +    + M ++GI P V TYSS+
Sbjct: 183 ELLQMMPDDGG--DCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSI 240

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC    ++ A E+L  MV+NGV P+  TYN     Y        A+   ++M  DG+
Sbjct: 241 IAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGV 300

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +YN L+       R    R++++ +   GL P++ +Y  L+ G   K    E  
Sbjct: 301 -EPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359

Query: 241 QYFVEMIEKGLLPQKVTFETLY-----RGLIQSDMLRTWRRLKKKLDEESITFGS 290
                M+  G+ P    F  L      +G +   ML   +  ++ L+ +++T+G+
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGT 414



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 138/304 (45%), Gaps = 58/304 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+++G+C   +   A  FL +M   GVEP+VVTYN L++ +C+               
Sbjct: 272 YNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGR----------CT 321

Query: 62  NAEKVFDEMRVRGIEPDVTS-----------------------------------FSIVL 86
            A K+FD M  RG++P++T+                                   FSI++
Sbjct: 322 EARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI 381

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
             Y++  +   ++   + M+++G+ P   TY +V+  LC  GR+EDA     +M+   + 
Sbjct: 382 CAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLS 441

Query: 147 PSAETYN------CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
           P    YN      C F ++      + A +L  +M + G+C+  +  +N +I       R
Sbjct: 442 PGNIVYNSLIHSLCIFDKW------DKAKELILEMLDRGICLDTIF-FNSIIDSHCKEGR 494

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           +    ++++ +   G+ PD+ +Y+ LI G C   K  EA +    M+  G+ P  VT+ T
Sbjct: 495 VIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNT 554

Query: 261 LYRG 264
           L  G
Sbjct: 555 LING 558



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 154/347 (44%), Gaps = 58/347 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SLI+  C  ++ D A+  + EM++RG+  + + +N +++  C+          E  +
Sbjct: 446 VYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCK----------EGRV 495

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             +EK+FD M   G++PD+ ++S ++  Y  A +   +   L  M   G+ P   TY+++
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG- 179
           +   C   R+EDA  L  EM  +GV P   TYN   +     +    A +LY  + E G 
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT 615

Query: 180 -----------------------------LCVPNMH----SYNILIGMFMALNRMDMVRE 206
                                        LC+ ++     ++NI+IG  + + R D  ++
Sbjct: 616 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKD 675

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++  +  +GL PD+ +Y+++   L E+   +E    F+ M E G         ++ R L+
Sbjct: 676 LFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLL 735

Query: 267 Q-SDMLRTWRRL----KKKLDEESITF--------GSEFQNYH-FKP 299
           Q  D+ R    L    +K    E+ T         G ++Q YH F P
Sbjct: 736 QRGDITRAGTYLFMIDEKHFSLEASTASLFLDLLSGGKYQEYHRFLP 782



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 135/292 (46%), Gaps = 26/292 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKT 59
           +++ LI  + K  ++D A     +M ++G+ P+ VTY  ++  +C+   +  + R FE+ 
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 60  I------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           I                          A+++  EM  RGI  D   F+ ++  + +  + 
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             S    + M   G+ P + TYS+++   C  G++++A +LL  MV  G+ P   TYN  
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y        A+ L+R+M+  G+  P++ +YNI++       R    +E++  +  SG
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVS-PDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +L +Y +++HGLC+     EA + F  +    L  +  TF  +   L++
Sbjct: 615 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 666



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 125/281 (44%), Gaps = 27/281 (9%)

Query: 30  VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89
           V PN+ TY +L+   C    L   +     + N  K       +G   D  +F+ +L   
Sbjct: 87  VTPNLCTYGILMGSCCCAGRL---DLGFAALGNVIK-------KGFIVDAIAFTPMLKGL 136

Query: 90  SRAHQPQLSLD-KLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV-CP 147
               +   ++D  L  M + G  P V +Y+ ++K LC   R ++A ELL  M  +G  CP
Sbjct: 137 CADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCP 196

Query: 148 S-----AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202
                     N FFKE     D + A   Y +M + G+ +PN+ +Y+ +I        MD
Sbjct: 197 PDVVSYTTVINGFFKE----GDLDKAYGTYHEMLDRGI-LPNVVTYSSIIAALCKAQAMD 251

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
              E+   +  +G+ P+  +Y  ++HG C   + KEA  +  +M   G+ P  VT+ +L 
Sbjct: 252 KAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLM 311

Query: 263 RGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNYHFK 298
             L ++      R++     K+ L  E  T+G+  Q Y  K
Sbjct: 312 DYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 108/218 (49%), Gaps = 12/218 (5%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG---ICPTVATYS 118
           +A  VFDE+  RG    +   +  L   +R H P  ++ + N M   G   + P + TY 
Sbjct: 37  DARHVFDELLRRGRGASIYGLNCALADVAR-HSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL-YRQMKE 177
            ++   C  GR++     LG +++ G    A  +    K     K  + AM +  R+M +
Sbjct: 96  ILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 178 DGLCVPNMHSYNILIGMFMALNR----MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
            G C+PN+ SYNIL+      NR    +++++ + +D  G    PD+ SYT +I+G  ++
Sbjct: 156 LG-CIPNVFSYNILLKGLCDDNRSQEALELLQMMPDD--GGDCPPDVVSYTTVINGFFKE 212

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
               +A   + EM+++G+LP  VT+ ++   L ++  +
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAM 250


>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
 gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
          Length = 866

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 129/260 (49%), Gaps = 10/260 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI  + +  + +++   L  M +  V P+++TYN ++N  C R  L     +E  + 
Sbjct: 181 YTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINS-CARGGLD----WEGLL- 234

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F EMR  GI+PD+ +++ +L   S       +      M E G+ P + TY+ +V
Sbjct: 235 ---GLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLV 291

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                  R++   ELL EM   G  P   +YN   + Y    +   A  ++R M+E G C
Sbjct: 292 DTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAG-C 350

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN  +Y+IL+G++    R D VRE++ ++K S   PD  +Y  LI    E   +KE   
Sbjct: 351 VPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVT 410

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F +M E+ + P   T+E L
Sbjct: 411 LFHDMAEENVEPNMETYEGL 430



 Score =  100 bits (248), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 117/234 (50%), Gaps = 16/234 (6%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           +PN   Y ++++ + R          E  +     +F+EM   G+   V S++ +++ Y 
Sbjct: 140 KPNEHIYTIMISLLGR----------EGLLEKCSDIFEEMGAHGVSRSVFSYTALINSYG 189

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLG---EMVRNGVCP 147
           R  + ++SL+ L  MK++ + P++ TY++V+   C+ G + D E LLG   EM   G+ P
Sbjct: 190 RNGKYEVSLELLERMKKERVSPSILTYNTVINS-CARGGL-DWEGLLGLFAEMRHEGIQP 247

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
              TYN        R   + A  ++R M E G+ VP++ +Y  L+  F  LNR+D V E+
Sbjct: 248 DIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGV-VPDITTYTYLVDTFGKLNRLDKVSEL 306

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
             ++  +G  P++ SY +L+         ++A   F  M E G +P   T+  L
Sbjct: 307 LKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSIL 360



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 125/285 (43%), Gaps = 26/285 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+  + K+NR+D     L EM   G  P + +YNVLL    R  ++  +    + ++
Sbjct: 287 YTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQ 346

Query: 62  ------NAE-------------------KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                 NAE                   ++F EM+V   EPD  +++ ++ V+      +
Sbjct: 347 EAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFK 406

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
             +   + M E+ + P + TY  ++      G  +DA+++L  M   G+ PS++ Y    
Sbjct: 407 EVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVI 466

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           + Y        A+     M E G   P + +YN LI MF           I   +   G+
Sbjct: 467 EAYGQAAMYEEALVTLNTMNEMG-SKPTIETYNTLIYMFARGGLYKETEAILLKMGDFGV 525

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
             + DS+  +I G  +  +++EA + +VEM +  L+P + T E +
Sbjct: 526 ARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAV 570



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 126/274 (45%), Gaps = 16/274 (5%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           +M E  VEPN+ TY  L+   C +  LH          +A+K+   M  +G+ P   +++
Sbjct: 414 DMAEENVEPNMETYEGLIFA-CGKGGLHD---------DAKKILLHMSEKGMIPSSKAYT 463

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            V+  Y +A   + +L  LN M E G  PT+ TY++++      G  ++ E +L +M   
Sbjct: 464 GVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAILLKMGDF 523

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           GV    +++N   + +R       A+K Y +M++  L VP+  +   ++ ++     +D 
Sbjct: 524 GVARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRL-VPDERTLEAVLSVYCIAGLVDE 582

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             E + ++K SG+ P++  Y M++    +  +W EA +   EM+             + +
Sbjct: 583 SVEQFQEIKASGILPNVMCYCMMLAVYAKSDRWNEAYELLDEMLTNRASNIHQVIGQMIK 642

Query: 264 GLIQSDMLRTWRRLK---KKLDEESITFGSEFQN 294
           G    D    W+ ++    KL+ E    G  F N
Sbjct: 643 GDFDDD--SNWQMVEYVFDKLNSEGCGLGMRFYN 674



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 56/114 (49%)

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
           S   +   FKE+  R D   +++L++ M+    C PN H Y I+I +      ++   +I
Sbjct: 106 SLNDFALVFKEFAQRGDWQRSLRLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDI 165

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           + ++   G+   + SYT LI+      K++ + +    M ++ + P  +T+ T+
Sbjct: 166 FEEMGAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTV 219


>gi|357499677|ref|XP_003620127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495142|gb|AES76345.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 412

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 11/252 (4%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A+  L  M+++G+ PN VTY+ L++G C              + NA+ +F  M +RG+  
Sbjct: 154 AKNVLAMMMKQGINPNAVTYSSLMDGYC----------LVNEVNNAKGIFSTMSLRGVTA 203

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           +V S++I+++ + +      +++    M  + + P V TY+S++  LC  G+I  A +L+
Sbjct: 204 NVWSYNIMINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLV 263

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            EM   G  P   TY+            + A+ L + +K+ G+  PNM++Y ILI     
Sbjct: 264 DEMHDRGQPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQGI-RPNMYTYTILIDGLCK 322

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
             R++    I+ D+   G    +++YT++IHG C K  + EA     +M +    P  +T
Sbjct: 323 GGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCFPNALT 382

Query: 258 FETLYRGLIQSD 269
           +E + R L  +D
Sbjct: 383 YEIIIRSLFDND 394



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 11/191 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G+CKI   D A     EM  R + P+VVTYN L+NG+C+             I 
Sbjct: 208 YNIMINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGK----------IS 257

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ DEM  RG  PD+ ++S +L    + HQ   ++  L  +K++GI P + TY+ ++
Sbjct: 258 YALKLVDEMHDRGQPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILI 317

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+EDA  +  +++  G   +  TY      +  +   + A+ L  +MK D  C
Sbjct: 318 DGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMK-DNSC 376

Query: 182 VPNMHSYNILI 192
            PN  +Y I+I
Sbjct: 377 FPNALTYEIII 387



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 1/159 (0%)

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
           G +++A+ +L  M++ G+ P+A TY+     Y    + N A  ++  M   G+   N+ S
Sbjct: 149 GNVKEAKNVLAMMMKQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTA-NVWS 207

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           YNI+I  F  +   D    ++ ++    L PD+ +Y  LI+GLC+  K   A +   EM 
Sbjct: 208 YNIMINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLVDEMH 267

Query: 248 EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           ++G  P  +T+ +L   L ++  +     L K L ++ I
Sbjct: 268 DRGQPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQGI 306


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 140/286 (48%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +++ G+CKI  +  AE +  ++++ G+ P+  TY  L+ G CR           K + 
Sbjct: 197 FNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRN----------KGVD 246

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA +VF  M  +G + +  S++ ++H    A +   +L     M E   CPTV TY+ ++
Sbjct: 247 NAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLI 306

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR  +A  L  EM   G  P+  TY             + A K+  +M E GL 
Sbjct: 307 YALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGL- 365

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +YN LI  +     +D   EI + ++ +  GP+  +Y  LI GLC+K+K  +A  
Sbjct: 366 IPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMA 425

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              +M+E+ L P  +T+ +L  G  + + L +  RL   ++E  + 
Sbjct: 426 LLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLV 471



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 137/310 (44%), Gaps = 26/310 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------------- 48
           YT LI G CK N++D A + L EM E+G+ P+VVTYN L++G C+               
Sbjct: 337 YTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLME 396

Query: 49  --SLHPSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
             S  P+ R           ++ +  A  + ++M  R + P + +++ ++H   + +  +
Sbjct: 397 SNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLE 456

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L+ M E G+ P   TYS  +  LC  GR+E+A  L   +   GV  +   Y    
Sbjct: 457 SAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALI 516

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y      + A  L  +M  D  C+PN ++YN+LI       +M     +   +   G+
Sbjct: 517 DGYCKVGKIDVAYSLLERMLNDA-CLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGV 575

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P + +YT+LI  + +   +  A + F  M+  G  P   T+           ML     
Sbjct: 576 KPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDD 635

Query: 277 LKKKLDEESI 286
           +  K++EE I
Sbjct: 636 VIAKMNEEGI 645



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 17/266 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVL---LNGVCRRASLHPSERFEK 58
           YT+LI+G C+  RI+ A +   +M E    P V TY VL   L+G  R+           
Sbjct: 267 YTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVE--------- 317

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
               A  +F+EM+ +G EP+V ++++++    + ++   +   L+ M EKG+ P+V TY+
Sbjct: 318 ----ALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYN 373

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++   C  G I+DA E+L  M  N   P+  TYN        ++  + AM L  +M E 
Sbjct: 374 ALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLER 433

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
            L  P++ +YN LI     +N ++    + + +  +GL PD  +Y++ I  LC++ + +E
Sbjct: 434 KLS-PSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEE 492

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRG 264
           A   F  +  KG+   +V +  L  G
Sbjct: 493 AGTLFDSVKAKGVKANEVIYTALIDG 518



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 129/290 (44%), Gaps = 40/290 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+LI G+CK+ +ID+A   L  M+     PN  TYNVL+ G+C+          EK +
Sbjct: 511 IYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCK----------EKKM 560

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  +  +M   G++P V +++I++    +      +L   N M   G  P V TY++ 
Sbjct: 561 KEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAF 620

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +    S G +E+ ++++ +M   G+ P   TY      Y      + A    + M + G 
Sbjct: 621 LHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTG- 679

Query: 181 CVPNMHSYNILIGMFMALNRMDMVR-----------------EIWNDVK----------- 212
           C P+++  +ILI      NRM   R                 ++W  ++           
Sbjct: 680 CKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKM 739

Query: 213 -GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
              G   D+  Y  LI G C++++ +EA      M E+G+ P +  + +L
Sbjct: 740 VEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSL 789



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 128/274 (46%), Gaps = 11/274 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+G CK+N ++ A R L  M E G+ P+  TY+V ++ +C+          E  + 
Sbjct: 442 YNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCK----------EGRVE 491

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +FD ++ +G++ +   ++ ++  Y +  +  ++   L  M      P   TY+ ++
Sbjct: 492 EAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLI 551

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC   ++++A  L+ +M+  GV P+  TY     E       + A+K++  M   G  
Sbjct: 552 EGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGY- 610

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y   +  + +   ++ V ++   +   G+ PDL +YT+LI G         A  
Sbjct: 611 QPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFD 670

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           +   M++ G  P       L + L   + ++  R
Sbjct: 671 FLKCMVDTGCKPSLYIVSILIKNLSHENRMKETR 704



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 118/270 (43%), Gaps = 46/270 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++    K   ID  +    E++   + PN+ T+N ++NG C+  ++  +E +   I 
Sbjct: 162 YNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIV 221

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A          G+ PD  +++ ++  + R      + +    M +KG      +Y++++
Sbjct: 222 QA----------GLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLI 271

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GRI                                   N A+KL+  M ED  C
Sbjct: 272 HGLCEAGRI-----------------------------------NEALKLFADMTEDN-C 295

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +Y +LI       R      ++N++K  G  P++ +YT+LI GLC++ K  EA +
Sbjct: 296 CPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARK 355

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              EM EKGL+P  VT+  L  G  +  M+
Sbjct: 356 MLSEMSEKGLIPSVVTYNALIDGYCKEGMI 385



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 19/170 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHP--SERFEKT 59
           YT LI G+ ++     A  FL  M++ G +P++   ++L+  +     +    SE    +
Sbjct: 652 YTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDS 711

Query: 60  IRN-----------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKL 102
           + N                 A K+F++M   G   DV+ +  ++  + +  + + +   +
Sbjct: 712 VSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLV 771

Query: 103 NFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
           + MKE+G+ P+   Y+S++ C C  G   +A  L+  MV NG+ P  E+Y
Sbjct: 772 HHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESY 821



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 5/184 (2%)

Query: 101 KLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160
           K+N   E    PT+  Y++++  L     I++ + +  E++ N + P+  T+N     Y 
Sbjct: 146 KMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYC 205

Query: 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
              +   A     ++ + GL  P+  +Y  LI        +D   E++  +   G   + 
Sbjct: 206 KIGNVVEAELYASKIVQAGLH-PDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNE 264

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRR 276
            SYT LIHGLCE  +  EA + F +M E    P   T+  L   L  S    + L  +  
Sbjct: 265 VSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNE 324

Query: 277 LKKK 280
           +K+K
Sbjct: 325 MKEK 328



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 10/86 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+C+  R++ A+  +  M ERG+ P+   YN LL+  C+              
Sbjct: 750 IYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLG----------VY 799

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVL 86
             A ++ D M   G+ P + S+ +++
Sbjct: 800 AEAVRLVDAMVENGLLPLLESYKLLV 825


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 140/284 (49%), Gaps = 14/284 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T +I G C+  R+D A   L   +  G EP+ VTYNV ++G+C+      +ER    + 
Sbjct: 10  FTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCK------AER----VD 59

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  +M  +   P   +++ ++    +A +   ++  L  M EKG  PT+ TY+ V+
Sbjct: 60  DAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVI 119

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM---KED 178
             L   GR+E+A  +  +M+ NG  P A  Y    K          A  LY++    K  
Sbjct: 120 DGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHH 179

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWND-VKGSGLGPDLDSYTMLIHGLCEKQKWK 237
              VP++ +Y  LI       R+   R++++D     G  PD  +YT +I GLC+  + +
Sbjct: 180 ATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVE 239

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           E C+ F EM  +G  P  VT+  L  G +++ M+    R+ +++
Sbjct: 240 EGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQM 283



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 151/331 (45%), Gaps = 54/331 (16%)

Query: 2   YTSLIYGWCKINRIDMAER-FLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKT 59
           YTSLI G CK  RI  A + F  E +ERG  P+ VTY  +++G+C+   +    ERF   
Sbjct: 189 YTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFH-- 246

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
                    EMR RG EPD  +++ ++  + +A     +      M + G   +  TY+ 
Sbjct: 247 ---------EMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNI 297

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC  GR+ +A      M   G   +  TY+     +    + + A++L+R+M + G
Sbjct: 298 ILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRG 357

Query: 180 LCVPNMHSYNILI-GMFMA--------------------------------LNRMDMVR- 205
            C PN+ SYNI+I G+  A                                  R+D V  
Sbjct: 358 -CEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSD 416

Query: 206 --EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             E++  +   G  P+L SY++L+ G+C     + A + F EM+ +G+ P  V F TL R
Sbjct: 417 GVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIR 476

Query: 264 GLIQS----DMLRTWRRLKKKLDEESITFGS 290
            L  +    + L  +R L+++   ++ ++ S
Sbjct: 477 WLCIAGRVDEALEVFRELERRSAPDAWSYWS 507



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 124/272 (45%), Gaps = 16/272 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIER----GVEPNVVTYNVLLNGVCRRASLHPSERF 56
           +YT+LI G CK  + + A     E   R       P+VVTY  L++G+C+          
Sbjct: 149 VYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGR------- 201

Query: 57  EKTIRNAEKVFDEMRV-RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA 115
              I  A +VFD+  V RG  PD  +++ ++    +  + +   ++ + M+ +G  P   
Sbjct: 202 ---ILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAV 258

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           TY++++        I  A  +  +M+++G   S  TYN              A   +  M
Sbjct: 259 TYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAM 318

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           +E G CV  + +Y+ L+  F +   +    E++  +   G  P+L SY ++I GLC   K
Sbjct: 319 EERG-CVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGK 377

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
             +A  YF +++++ L P   TF     GL Q
Sbjct: 378 LAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQ 409



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 139/334 (41%), Gaps = 56/334 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G  K  R+D A   L +M+E+G  P + TY V+++G      L  + R E+   
Sbjct: 80  YTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDG------LSKAGRVEE--- 130

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVL-----------------HVYSRAHQPQLSLDKLNF 104
            A ++F +M   G  PD   ++ ++                    +R H      D + +
Sbjct: 131 -ARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTY 189

Query: 105 MK-----------------------EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
                                    E+G  P   TY+S++  LC  GR+E+  E   EM 
Sbjct: 190 TSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMR 249

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
             G  P A TY      +   K    A ++YRQM + G  V  + +YNI++       R+
Sbjct: 250 NRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTV-TYNIILDGLCKAGRV 308

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
                 +  ++  G    + +Y+ L+ G C +     A + F  M+++G  P  V++  +
Sbjct: 309 AEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNII 368

Query: 262 YRGLIQSDMLRTW-----RRLKKKLDEESITFGS 290
            RGL ++  L        + L+++L  +  TF +
Sbjct: 369 IRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNA 402



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 1/157 (0%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P +  ++ V+  LC   R+++A  +L   VR G  P   TYN F       +  + A +L
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
            ++M E   C+P   +Y  L+   +   R+D    +   +   G  P L +YT++I GL 
Sbjct: 65  LKKMDEKK-CLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLS 123

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           +  + +EA + FV+M+  G  P    +  L +GL +S
Sbjct: 124 KAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKS 160



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 60/206 (29%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSE-RFEK-- 58
           Y++L+ G+C    +  A      M++RG EPN+V+YN+++ G+CR   L  +   FEK  
Sbjct: 330 YSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLL 389

Query: 59  -----------------------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                  T+ +  ++F+ M  +G  P++ S+SI++    RA   
Sbjct: 390 QRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGL 449

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLC------------------------------ 125
           +++L+    M  +G+ P V  ++++++ LC                              
Sbjct: 450 EVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAPDAWSYWSLL 509

Query: 126 ----SCGRIEDAEELLGEMVRNGVCP 147
                C R+E+A  L   M   G  P
Sbjct: 510 DGLSRCERMEEARLLSFHMKLQGCAP 535



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%)

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P+M ++ ++I       R+D    +      +G  PD  +Y + I GLC+ ++  +A 
Sbjct: 3   CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 62

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           Q   +M EK  LP  VT+  L  GL+++  L
Sbjct: 63  QLLKKMDEKKCLPTTVTYTALVDGLLKAGRL 93



 Score = 43.9 bits (102), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 38/67 (56%)

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           PD+ ++T++I+GLC +++  EA       +  G  P  VT+     GL +++ +    +L
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64

Query: 278 KKKLDEE 284
            KK+DE+
Sbjct: 65  LKKMDEK 71


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 151/329 (45%), Gaps = 61/329 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK--- 58
           Y SL+ G+CK   +  A    G++   G+ P V+TYN+L++G CR   L  + R ++   
Sbjct: 381 YNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMV 440

Query: 59  ----------------------TIRNAEKVFDEMRVRGIEPDVTSFS------IVLHVYS 90
                                 ++  A + FDEM  +G++PD  +++      + L   +
Sbjct: 441 EQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIA 500

Query: 91  RAHQPQ-------LSLDKLNF----------------------MKEKGICPTVATYSSVV 121
           +A + +       +S D + +                      M   G+ P   TY+ ++
Sbjct: 501 KAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLI 560

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + +A +   +M+ +G+ PSA TY  F   Y  R +   A   +R+M E+G+ 
Sbjct: 561 HAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGV- 619

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +YN+LI       R  +    ++++   GL P+  +YT+LI G C++  W++A +
Sbjct: 620 EPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMR 679

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           ++ EM + G+ P  +T + L++G  +  M
Sbjct: 680 FYFEMHQNGIHPDYLTHKALFKGFDEGHM 708



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 128/286 (44%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G      +  A+    EM   G+ P VVTYN +++G+ +             + 
Sbjct: 311 YNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQ----------VE 360

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+  F EMR  G++PDV +++ +L+ Y +A   + +L     ++  G+ PTV TY+ ++
Sbjct: 361 AAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILI 420

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +E+A  L  EMV  G  P   TY    K          A + + +M   GL 
Sbjct: 421 DGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGL- 479

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN  I   + L  +     +   +   G+  D  +Y +LI GLC+     +A  
Sbjct: 480 QPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKD 539

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             ++M+  GL P  +T+  L     +  +LR  R+  K +  + + 
Sbjct: 540 LQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLA 585



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 132/289 (45%), Gaps = 16/289 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVE--PNVVTYNVLLNGVCRRASLHPSERFEKT 59
           Y +L+  + K  R D     L EM  RG    PN VT+NV++ G+ R+  L         
Sbjct: 240 YNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDL--------- 290

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNF-MKEKGICPTVATYS 118
              A ++ + MR+       T   ++  + ++    +   D L   M+ +GI PTV TY+
Sbjct: 291 -EEAAEMVEGMRLSKKASSFTYNPLITGLLAKGFVKKA--DDLQLEMENEGIMPTVVTYN 347

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++  L   G++E A+    EM   G+ P   TYN     Y        A+ L+  ++  
Sbjct: 348 AMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHA 407

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           GL  P + +YNILI  +  L  ++  R +  ++   G  PD+ +YT+L+ G         
Sbjct: 408 GL-APTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAM 466

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           A ++F EM+ KGL P    + T  R  +    +    RL++ +  E I+
Sbjct: 467 AREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGIS 515



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 10/177 (5%)

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           L L   + M   G+ P V   + V++ L    R +D   +  EM++ G+ PS  TYN   
Sbjct: 185 LCLSAFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLL 244

Query: 157 KEY--RGRKDANGAMKLYRQMKEDGL-CVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
             +   GR D      L ++M+  G  C+PN  ++N++I     L R   + E    V+G
Sbjct: 245 DSFLKEGRNDK--VAMLLKEMETRGSGCLPNDVTHNVVI---TGLARKGDLEEAAEMVEG 299

Query: 214 SGLGPDLDSYTM--LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             L     S+T   LI GL  K   K+A    +EM  +G++P  VT+  +  GL+QS
Sbjct: 300 MRLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQS 356


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 148/301 (49%), Gaps = 11/301 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G+C    +D A + + EM+   + P+   +  L++G C+               
Sbjct: 433 YSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMG----------LWV 482

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA + F+ M   GI P + + ++++  + R  + + +L+ +N M+ +GI P + TY++V+
Sbjct: 483 NALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVI 542

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   + E A EL   M++  V PS   Y+     +  + ++  A+ LY +M + G+ 
Sbjct: 543 NRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGV- 601

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+M +Y ILI +    +RM     ++  +  +G+ PD  SYT +I G C     ++A  
Sbjct: 602 TPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWA 661

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYR 301
            F EM+++G LP  VT+ +L  G  + + +     L  ++  + IT      N     +R
Sbjct: 662 LFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHR 721

Query: 302 R 302
           R
Sbjct: 722 R 722



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 133/266 (50%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I+G CK   +D A + L EM   G+ P+V TY++L++G C++            + 
Sbjct: 328 YNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGD----------VE 377

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + +EM+   +EP + S+S + H   +     +SLD    +   G       YS ++
Sbjct: 378 KGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILI 437

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C  G ++ A +L+ EMVRN + P    +      +        A++ +  M E G+ 
Sbjct: 438 KGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGI- 496

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ + N++I       R++    + N+++  G+ P+L +Y  +I+ LC+++K + A +
Sbjct: 497 LPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALE 556

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
            F  M+++ +LP  V + TL  G  +
Sbjct: 557 LFPLMLKRNVLPSVVVYSTLIDGFAK 582



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 150/299 (50%), Gaps = 27/299 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR----ASLH------ 51
           Y+ LI+G+CK   ++     + EM    +EP++V+Y+ L +G+C++     SL       
Sbjct: 363 YSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLG 422

Query: 52  -PSERFEKT--------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
               ++++T              + +A K+ +EM    + PD ++F  ++H + +     
Sbjct: 423 AAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWV 482

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+  N M E GI P++AT + ++   C  GR+E+A  L+ EM   G+ P+  TYN   
Sbjct: 483 NALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVI 542

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                 + +  A++L+  M +  + +P++  Y+ LI  F   +       ++  +   G+
Sbjct: 543 NRLCKERKSERALELFPLMLKRNV-LPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGV 601

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ-SDMLRTW 274
            PD+ +YT+LI+ LC + +  EA   F +M E G+ P K+++ ++  G  +  DM + W
Sbjct: 602 TPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAW 660



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 133/271 (49%), Gaps = 12/271 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +I   C+  R++ A   + EM  +G+ PN+ TYN ++N +C+          E+    A 
Sbjct: 506 IIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCK----------ERKSERAL 555

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           ++F  M  R + P V  +S ++  +++    Q +L     M + G+ P +  Y+ ++  L
Sbjct: 556 ELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINIL 615

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C   R+ +A  L  +M  NG+ P   +Y      +    D   A  L+ +M + G  +P 
Sbjct: 616 CHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRG-HLPT 674

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y  L+  +  +NR+D+   + +++K  G+ PD+ +Y +LI     +    +A +   
Sbjct: 675 VVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLN 734

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           EM E G+LP  +T+  L   L+++  L+T R
Sbjct: 735 EMKENGVLPDHMTYMML-EWLLKAKKLKTRR 764



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 102/191 (53%), Gaps = 11/191 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y++LI G+ K +    A      M++ GV P++V Y +L+N +C R+ +          
Sbjct: 572 VYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMC--------- 622

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F +M   G+ PD  S++ V+  + R    + +    N M ++G  PTV TY+S+
Sbjct: 623 -EAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSL 681

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V   C   RI+ A+ L+ EM R G+ P   TYN     +R R + + A+++  +MKE+G+
Sbjct: 682 VDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGV 741

Query: 181 CVPNMHSYNIL 191
            +P+  +Y +L
Sbjct: 742 -LPDHMTYMML 751



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 111/253 (43%), Gaps = 5/253 (1%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           NR +       EM   G  PNV TY +++N  C+          +   R A ++ +EM  
Sbjct: 228 NRREFLRSLFEEMKSTGPPPNVFTYTIMMNFYCK----GNFGEADIDTRQATEILEEMER 283

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
            G  P V ++S  ++   R    + +LD +  +        V  Y++++  LC  G +++
Sbjct: 284 NGESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDE 343

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A ++L EM   G+ P   TY+     +  + D    + L  +MK   +  P++ SY+ L 
Sbjct: 344 ALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNM-EPSLVSYSSLF 402

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                    D+  +I+ D+  +G   D  +Y++LI G C +     A +   EM+   L 
Sbjct: 403 HGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLA 462

Query: 253 PQKVTFETLYRGL 265
           P    FE+L  G 
Sbjct: 463 PDPSNFESLVHGF 475



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 106/212 (50%), Gaps = 8/212 (3%)

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK------LNFMKEKGICPTVATYSS 119
           +F+EM+  G  P+V +++I+++ Y + +  +  +D       L  M+  G  PTV TYS+
Sbjct: 236 LFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYST 295

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
            +  LC  G +E A + +  ++      +   YN        + + + A+K+  +MK  G
Sbjct: 296 YIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCG 355

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  P++++Y+ILI  F     ++    +  ++K S + P L SY+ L HGLC+K+    +
Sbjct: 356 IS-PDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDIS 414

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGL-IQSDM 270
              F ++   G    +  +  L +G  +Q D+
Sbjct: 415 LDIFRDLGAAGYKYDQTAYSILIKGFCMQGDL 446



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 9/213 (4%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           + NA  VF + +  G+E    S + +L   + A++ +        MK  G  P V TY+ 
Sbjct: 195 LENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEEMKSTGPPPNVFTYTI 254

Query: 120 VVKCLCSCGRIE------DAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           ++   C     E       A E+L EM RNG  P+  TY+ +            A+   R
Sbjct: 255 MMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVR 314

Query: 174 QM-KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
            +   +GL   N++ YN +I        +D   ++  ++K  G+ PD+ +Y++LIHG C+
Sbjct: 315 SLISANGLV--NVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCK 372

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +   ++      EM    + P  V++ +L+ GL
Sbjct: 373 QGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGL 405


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 133/295 (45%), Gaps = 45/295 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLN------------------- 42
           YTSLI  +    R   A     +M E G +P ++TYNV+LN                   
Sbjct: 211 YTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKM 270

Query: 43  ---GV-------------CRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
              G+             C+R SLH         + A +VF+EM+  G   D  +++ +L
Sbjct: 271 KSDGIAPDAYTYNTLITCCKRGSLH---------QEAAQVFEEMKAAGFSYDKVTYNALL 321

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
            VY ++H+P+ ++  LN M   G  P++ TY+S++      G +++A EL  +M   G  
Sbjct: 322 DVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTK 381

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P   TY      +        AM ++ +M+  G C PN+ ++N  I M+    +   + +
Sbjct: 382 PDVFTYTTLLSGFERAGKVESAMSIFEEMRNAG-CKPNICTFNAFIKMYGNRGKFTEMMK 440

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           I++++   GL PD+ ++  L+    +     E    F EM   G +P++ TF TL
Sbjct: 441 IFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTL 495



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 117/244 (47%), Gaps = 12/244 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL++ +     I +      E+    +EP  V    L+  VC +  L P         
Sbjct: 562 YCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLV-LVCSKCDLLPE-------- 612

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+ F E++ RG  PD+T+ + ++ +Y R      +   L++MKE+G  P++ATY+S++
Sbjct: 613 -AERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLM 671

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                      +EE+L E++  G+ P   +YN     Y        A +++ +M+  G+ 
Sbjct: 672 YMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGI- 730

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++ +YN  IG + A +  +    +   +   G  P+ ++Y  ++ G C+  +  EA +
Sbjct: 731 VPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEA-K 789

Query: 242 YFVE 245
            FVE
Sbjct: 790 LFVE 793



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 103/209 (49%), Gaps = 11/209 (5%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +L+    K + +  AER   E+ ERG  P++ T N +++   RR          + +  A
Sbjct: 599 TLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRR----------QMVAKA 648

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             V D M+ RG  P + +++ +++++SR+     S + L  +  KGI P + +Y++V+  
Sbjct: 649 NGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYA 708

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C   R+ DA  +  EM  +G+ P   TYN F   Y        A+ + R M + G C P
Sbjct: 709 YCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHG-CRP 767

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVK 212
           N ++YN ++  +  LNR D  +    D++
Sbjct: 768 NQNTYNSIVDGYCKLNRKDEAKLFVEDLR 796



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 107/260 (41%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI  + +    + A      M++ GV P++ TYN +L  + R      SE       
Sbjct: 492 FNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSE------- 544

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              KV  EM     +P+  ++  +LH Y+   +  L       +    I P      ++V
Sbjct: 545 ---KVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLV 601

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                C  + +AE    E+   G  P   T N     Y  R+    A  +   MKE G  
Sbjct: 602 LVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGF- 660

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+M +YN L+ M           EI  ++   G+ PD+ SY  +I+  C   + ++A +
Sbjct: 661 TPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASR 720

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F EM   G++P  +T+ T 
Sbjct: 721 IFSEMRNSGIVPDVITYNTF 740



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 124/321 (38%), Gaps = 63/321 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI  + +   +D A     +M E+G +P+V TY  LL+G  R   +  +    + +R
Sbjct: 352 YNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMR 411

Query: 62  NAE-------------------------KVFDEMRVRGIEPDVTS--------------- 81
           NA                          K+FDE+ V G+ PD+ +               
Sbjct: 412 NAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDS 471

Query: 82  --------------------FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                               F+ ++  YSR    + ++     M + G+ P ++TY++V+
Sbjct: 472 EVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVL 531

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             L   G  E +E++L EM  +G C P+  TY      Y   K+  G M    +    G+
Sbjct: 532 AALARGGMWEQSEKVLAEM-EDGRCKPNELTYCSLLHAYANGKEI-GLMHSLAEEVYSGV 589

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P       L+ +    + +      ++++K  G  PD+ +   ++     +Q   +A 
Sbjct: 590 IEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKAN 649

Query: 241 QYFVEMIEKGLLPQKVTFETL 261
                M E+G  P   T+ +L
Sbjct: 650 GVLDYMKERGFTPSMATYNSL 670



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 96/209 (45%), Gaps = 4/209 (1%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           D +  +I++ +  +  +   + +  N ++E G    V +Y+S++    + GR  +A  + 
Sbjct: 172 DNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVF 231

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDA--NGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
            +M  +G  P+  TYN     + G+     N    L  +MK DG+  P+ ++YN LI   
Sbjct: 232 KKMEEDGCKPTLITYNVILNVF-GKMGTPWNKITSLVEKMKSDGIA-PDAYTYNTLITCC 289

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
              +      +++ ++K +G   D  +Y  L+    +  + KEA +   EM+  G  P  
Sbjct: 290 KRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSI 349

Query: 256 VTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
           VT+ +L     +  ML     LK ++ E+
Sbjct: 350 VTYNSLISAYARDGMLDEAMELKNQMAEK 378



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 96/210 (45%), Gaps = 2/210 (0%)

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           E  + +A  +F+ ++  G   DV S++ ++  ++ + + + +++    M+E G  PT+ T
Sbjct: 186 EGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLIT 245

Query: 117 YSSVVKCLCSCGRI-EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           Y+ ++      G        L+ +M  +G+ P A TYN      +       A +++ +M
Sbjct: 246 YNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEM 305

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           K  G     + +YN L+ ++   +R     ++ N++  +G  P + +Y  LI        
Sbjct: 306 KAAGFSYDKV-TYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGM 364

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
             EA +   +M EKG  P   T+ TL  G 
Sbjct: 365 LDEAMELKNQMAEKGTKPDVFTYTTLLSGF 394


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 127/263 (48%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+ K   +D A     +M E+G+ PNVVTY+ L+NG+C+           K + 
Sbjct: 227 YNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCK----------TKEMD 276

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+V  +M   G+ P+  +++ ++H YS +   + S+     M    + P V   +S +
Sbjct: 277 KAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFM 336

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GRI++A ++   MV  G  P   +Y      Y       G   L+  M  +G+ 
Sbjct: 337 TALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGV- 395

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+ H +N LI  +  L  MD    ++ D+   G+ PD+ +++ +I   C   +  +A +
Sbjct: 396 VPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAME 455

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F  MI+ G+ P    +  L +G
Sbjct: 456 KFNHMIDTGVPPDTAVYSCLIQG 478



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 143/352 (40%), Gaps = 65/352 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           Y+SLI G CK   +D AER L +M+  GV PN +TYN L++G         S R  K   
Sbjct: 262 YSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMS 321

Query: 60  -----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLH--------- 87
                                  I+ A  +FD M ++G +PDV S+  +LH         
Sbjct: 322 SSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIA 381

Query: 88  --------------------------VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                                      Y+R      SL     M ++G+ P + T+S+V+
Sbjct: 382 GMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVI 441

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR++DA E    M+  GV P    Y+C  +    R+D   A +L   M   G+ 
Sbjct: 442 SAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIP 501

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P +  +  +I       R+   +++ + +  +G  P+L ++  L+ G C     KEA  
Sbjct: 502 PPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVG 561

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRR-LKKKLDEESITF 288
               M   G+ P   T+ TL  G  +     D L  +R  L K++   S+++
Sbjct: 562 LLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSY 613



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 127/269 (47%), Gaps = 16/269 (5%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
           P + TYN+L+N  C R +  P             VF  +   G+ PDV S++ ++  +S+
Sbjct: 187 PTIYTYNILIN--CYRRARRPDLGL--------PVFGRLLRTGLGPDVFSYNALIDGFSK 236

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
             +   + D    M+E+GI P V TYSS++  LC    ++ AE +L +MV  GV P+  T
Sbjct: 237 EGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMT 296

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           YNC    Y        +++++++M    L VP++ + N  +       R+   R+I++ +
Sbjct: 297 YNCLIHGYSTSGMWKESVRVFKEMSS-SLLVPDVGNCNSFMTALCKHGRIKEARDIFDSM 355

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR-----GLI 266
              G  PD+ SY  L+HG             F  M+ +G++P +  F TL       G++
Sbjct: 356 VLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMM 415

Query: 267 QSDMLRTWRRLKKKLDEESITFGSEFQNY 295
              +L      K+ ++ + ITF +    +
Sbjct: 416 DKSLLMFEDMTKQGVNPDIITFSTVISAF 444



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 135/281 (48%), Gaps = 19/281 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++++I  +C++ R+D A      MI+ GV P+   Y+ L+ G C R          + + 
Sbjct: 437 FSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNR----------RDLV 486

Query: 62  NAEKVFDEMRVRGIEPD-VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            A+++  +M  +GI P  +  F+ +++   +  +     D ++ +   G  P + T++S+
Sbjct: 487 KAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSL 546

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V   C  G +++A  LL  M   GV P   TYN     Y      + A+ L+R M    +
Sbjct: 547 VDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRV 606

Query: 181 CVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            + ++ SYNI++ G+F A  R  + +E+++++  SG+   + +Y  ++ GLC      EA
Sbjct: 607 TLTSV-SYNIILHGLFQA-RRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEA 664

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK 280
                 M+ + L    V F+ L   ++   M +  RR + K
Sbjct: 665 -----NMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAK 700



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 144/346 (41%), Gaps = 62/346 (17%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH------------ 51
           S +   CK  RI  A      M+ +G +P+V++Y  LL+G      +             
Sbjct: 334 SFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCE 393

Query: 52  ---PSERFEKTIRNAEK----------VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLS 98
              P      T+ NA            +F++M  +G+ PD+ +FS V+  + R  +   +
Sbjct: 394 GVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDA 453

Query: 99  LDKLNFMKEKGICPTVATYS------------------------------------SVVK 122
           ++K N M + G+ P  A YS                                    S++ 
Sbjct: 454 MEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIIN 513

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  GR+ + ++++  ++  G  P+  T+N     Y    +   A+ L   M+  G+  
Sbjct: 514 NLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGV-E 572

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++++YN L+  +    R+D    ++ D+    +     SY +++HGL + ++   A + 
Sbjct: 573 PDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEM 632

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
           F EMIE G+     T+ T+  GL +++       L +KL   ++ F
Sbjct: 633 FHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKF 678



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 120/260 (46%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + SL+ G+C +  +  A   L  M   GVEP++ TYN L++G C+             I 
Sbjct: 543 FNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGR----------ID 592

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +F +M  + +     S++I+LH   +A +  ++ +  + M E G+  ++ TY++V+
Sbjct: 593 DALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVL 652

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC     ++A  LL ++    V     T+N   +          A +L+  +   GL 
Sbjct: 653 GGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGL- 711

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP + +Y ++I   +     +    +++ ++ S   PD      +I  L  K +  +A  
Sbjct: 712 VPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGN 771

Query: 242 YFVEMIEKGLLPQKVTFETL 261
           Y  ++ +KG+LP+  T   L
Sbjct: 772 YLSKIDKKGILPEATTTSLL 791



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 97/219 (44%), Gaps = 26/219 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR-RASLHPSERFEKTI 60
           Y +L+ G+CK  RID A     +M+ + V    V+YN++L+G+ + R ++   E F + I
Sbjct: 578 YNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMI 637

Query: 61  -------------------RN-----AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                              RN     A  + +++    ++ D+ +F+IV+    +  + Q
Sbjct: 638 ESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQ 697

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + +    +   G+ PT+ TY  ++  L      EDA+ L   M ++   P +   N   
Sbjct: 698 EAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEII 757

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           +    + +   A     ++ + G+ +P   + ++LI +F
Sbjct: 758 RMLLNKGEVAKAGNYLSKIDKKGI-LPEATTTSLLIYLF 795


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 145/293 (49%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+ K   +D A     EM++RG+ PNVVTY+ ++  +C+           + + 
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCK----------AQAMD 251

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V   M   G+ P+  +++ ++H Y  + QP+ ++  L  M   G+ P V TY+S++
Sbjct: 252 KAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLM 311

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A ++   M + G+ P   TY    + Y  +        L   M  +G+ 
Sbjct: 312 DYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 371

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN + ++ILI  +    ++D    +++ ++  GL PD  +Y  +I  LC+  + ++A +
Sbjct: 372 -PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           YF +MI++ L P  + + +L   L   D     + L  ++ +  I   + F N
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFN 483



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 138/297 (46%), Gaps = 19/297 (6%)

Query: 2   YTSLIYGWCKINRI-DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +T L+ G C   R  D  +  L  M + G  PNV +YN+LL G+C           E   
Sbjct: 129 FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCD----------ENRS 178

Query: 61  RNAEKVFDEMRVRGIE--PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           + A ++   M   G +  PDV S++ V++ + +      +    + M ++GI P V TYS
Sbjct: 179 QEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYS 238

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           S++  LC    ++ A E+L  MV+NGV P+  TYN     Y        A+   ++M  D
Sbjct: 239 SIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSD 298

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P++ +YN L+       R    R++++ +   GL P++ +Y  L+ G   K    E
Sbjct: 299 GV-EPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357

Query: 239 ACQYFVEMIEKGLLPQKVTFETLY-----RGLIQSDMLRTWRRLKKKLDEESITFGS 290
                  M+  G+ P    F  L      +G +   ML   +  ++ L+ +++T+G+
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGT 414



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 138/304 (45%), Gaps = 58/304 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+++G+C   +   A  FL +M   GVEP+VVTYN L++ +C+               
Sbjct: 272 YNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGR----------CT 321

Query: 62  NAEKVFDEMRVRGIEPDVTS-----------------------------------FSIVL 86
            A K+FD M  RG++P++T+                                   FSI++
Sbjct: 322 EARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI 381

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
             Y++  +   ++   + M+++G+ P   TY +V+  LC  GR+EDA     +M+   + 
Sbjct: 382 CAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLS 441

Query: 147 PSAETYN------CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
           P    YN      C F ++      + A +L  +M + G+C+  +  +N +I       R
Sbjct: 442 PGNIVYNSLIHSLCIFDKW------DKAKELILEMLDRGICLDTIF-FNSIIDSHCKEGR 494

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           +    ++++ +   G+ PD+ +Y+ LI G C   K  EA +    M+  G+ P  VT+ T
Sbjct: 495 VIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNT 554

Query: 261 LYRG 264
           L  G
Sbjct: 555 LING 558



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 152/343 (44%), Gaps = 57/343 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SLI+  C  ++ D A+  + EM++RG+  + + +N +++  C+          E  +
Sbjct: 446 VYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCK----------EGRV 495

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             +EK+FD M   G++PD+ ++S ++  Y  A +   +   L  M   G+ P   TY+++
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG- 179
           +   C   R+EDA  L  EM  +GV P   TYN   +     +    A +LY  + E G 
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT 615

Query: 180 -----------------------------LCVPNMH----SYNILIGMFMALNRMDMVRE 206
                                        LC+ ++     ++NI+IG  + + R D  ++
Sbjct: 616 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKD 675

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++  +  +GL PD+ +Y+++   L E+   +E    F+ M E G         ++ R L+
Sbjct: 676 LFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLL 735

Query: 267 Q-SDMLRTWRRL----KKKLDEESITF--------GSEFQNYH 296
           Q  D+ R    L    +K    E+ T         G ++Q YH
Sbjct: 736 QRGDITRAGTYLFMIDEKHFSLEASTASLFLDLLSGGKYQEYH 778



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 135/292 (46%), Gaps = 26/292 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKT 59
           +++ LI  + K  ++D A     +M ++G+ P+ VTY  ++  +C+   +  + R FE+ 
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 60  I------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           I                          A+++  EM  RGI  D   F+ ++  + +  + 
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             S    + M   G+ P + TYS+++   C  G++++A +LL  MV  G+ P   TYN  
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y        A+ L+R+M+  G+  P++ +YNI++       R    +E++  +  SG
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVS-PDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +L +Y +++HGLC+     EA + F  +    L  +  TF  +   L++
Sbjct: 615 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 666



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 125/281 (44%), Gaps = 27/281 (9%)

Query: 30  VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89
           V PN+ TY +L+   C    L   +     + N  K       +G   D  +F+ +L   
Sbjct: 87  VTPNLCTYGILIGSCCCAGRL---DLGFAALGNVIK-------KGFRVDAIAFTPLLKGL 136

Query: 90  SRAHQPQLSLD-KLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV-CP 147
               +   ++D  L  M + G  P V +Y+ ++K LC   R ++A ELL  M  +G  CP
Sbjct: 137 CADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCP 196

Query: 148 S-----AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202
                     N FFKE     D + A   Y +M + G+ +PN+ +Y+ +I        MD
Sbjct: 197 PDVVSYTTVINGFFKE----GDLDKAYGTYHEMLDRGI-LPNVVTYSSIIAALCKAQAMD 251

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
              E+   +  +G+ P+  +Y  ++HG C   + KEA  +  +M   G+ P  VT+ +L 
Sbjct: 252 KAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLM 311

Query: 263 RGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNYHFK 298
             L ++      R++     K+ L  E  T+G+  Q Y  K
Sbjct: 312 DYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 108/218 (49%), Gaps = 12/218 (5%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG---ICPTVATYS 118
           +A  VFDE+  RG    +   +  L   +R H P  ++ + N M   G   + P + TY 
Sbjct: 37  DARHVFDELLRRGRGASIYGLNCALADVAR-HSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL-YRQMKE 177
            ++   C  GR++     LG +++ G    A  +    K     K  + AM +  R+M +
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 178 DGLCVPNMHSYNILIGMFMALNR----MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
            G C+PN+ SYNIL+      NR    +++++ + +D  G    PD+ SYT +I+G  ++
Sbjct: 156 LG-CIPNVFSYNILLKGLCDENRSQEALELLQMMPDD--GGDCPPDVVSYTTVINGFFKE 212

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
               +A   + EM+++G+LP  VT+ ++   L ++  +
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAM 250


>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 884

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 131/279 (46%), Gaps = 12/279 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           +S++ G  K  R+  A   L +MI++G+  N V + VLL+G  +                
Sbjct: 527 SSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGD----------TAG 576

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  ++ EM  RGI PD  +FS  +   S+A   + + +  + M +KG  P    Y+S++ 
Sbjct: 577 AHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIH 636

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC+CG++ +A +L  EM + G+ P   T N     +        A   + +M   G+  
Sbjct: 637 GLCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGV-T 695

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+  +YN LIG +  +  M    E  N +  SG  PD+ +Y + I G C  QK   A   
Sbjct: 696 PDTVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTM 755

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
             E+I  G++P  VT+ T+    + +DML     L  KL
Sbjct: 756 LDELIAVGVVPNTVTYNTMMNA-VCTDMLDRAMVLTAKL 793



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 116/242 (47%), Gaps = 11/242 (4%)

Query: 20  RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDV 79
           + L  MI  G  P    +N+++   C++  L          R AE +   M     EPDV
Sbjct: 264 KLLRGMIRDGPRPCNHNFNIMILCFCQKGYL----------RVAESLLFVMPKFCCEPDV 313

Query: 80  TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
            +++I+++ Y    +   +L  L+ M + G  P++ T+S+++   C+ G + +A ++   
Sbjct: 314 YAYNILINAYRIRGRTSDALGFLHLMIKNGCKPSLITFSTIITAFCNEGNVVEARKIFEG 373

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
           +   G+ P+   YN     Y   +D   A  LY +M++ G+  P+  ++NIL+       
Sbjct: 374 IQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGI-APDGATFNILVAGNYKYG 432

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           +     E++ D   S L PD   Y + + GLC   +  EA Q+  +M+EKG+ P  V F 
Sbjct: 433 KEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFN 492

Query: 260 TL 261
           ++
Sbjct: 493 SV 494



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 134/286 (46%), Gaps = 11/286 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY +L+ G+ K   +  A     EM ++G+ P+  T+N+L+ G         + ++ K  
Sbjct: 385 MYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVAG---------NYKYGKEA 435

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            + E +F +  +  + PD + + + +     A Q   ++  L  M EKG+ P+V  ++SV
Sbjct: 436 DSYE-LFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSV 494

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +      G  ++A +    M+  G+ PS+ T +        +     A  L  +M + GL
Sbjct: 495 IAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGL 554

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            V N  ++ +L+  +  +        +W +++  G+ PD  +++  I GL +    +EA 
Sbjct: 555 PV-NKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAY 613

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           + F EM +KG +P    + +L  GL     L    +L++++ ++ +
Sbjct: 614 EAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGL 659



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 96/195 (49%), Gaps = 12/195 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SLI+G C   ++  A +   EM ++G+ P++ T N+++NG C+          E  +
Sbjct: 630 VYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCK----------EGRM 679

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           ++A   F EM   G+ PD  +++ ++  Y +      + + LN M   G  P + TY+  
Sbjct: 680 KSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIR 739

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  CS  +I  A  +L E++  GV P+  TYN            + AM L  ++ +   
Sbjct: 740 IQGFCSSQKISRAVTMLDELIAVGVVPNTVTYNTMMNAV-CTDMLDRAMVLTAKLLKMAF 798

Query: 181 CVPNMHSYNILIGMF 195
            VPN+ + N+L+  F
Sbjct: 799 -VPNVVTTNVLLSHF 812



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 1/200 (0%)

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           ++   MR  G+ P  ++ SI+  +  R          L  M   G  P    ++ ++ C 
Sbjct: 229 EILSRMREVGVRPSSSAISILFRLLLRVGDYGSVWKLLRGMIRDGPRPCNHNFNIMILCF 288

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G +  AE LL  M +    P    YN     YR R   + A+     M ++G C P+
Sbjct: 289 CQKGYLRVAESLLFVMPKFCCEPDVYAYNILINAYRIRGRTSDALGFLHLMIKNG-CKPS 347

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +++ +I  F     +   R+I+  ++  GL P++  Y  L+ G  + +   +A   + 
Sbjct: 348 LITFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYE 407

Query: 245 EMIEKGLLPQKVTFETLYRG 264
           EM +KG+ P   TF  L  G
Sbjct: 408 EMRDKGIAPDGATFNILVAG 427



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 21/137 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK+  +  A+ FL +M   G +P++ TYN+ + G C            + I 
Sbjct: 701 YNTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCS----------SQKIS 750

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLH-----VYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
            A  + DE+   G+ P+  +++ +++     +  RA      L K+ F+      P V T
Sbjct: 751 RAVTMLDELIAVGVVPNTVTYNTMMNAVCTDMLDRAMVLTAKLLKMAFV------PNVVT 804

Query: 117 YSSVVKCLCSCGRIEDA 133
            + ++   C  G  E A
Sbjct: 805 TNVLLSHFCKQGMPEKA 821



 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 1/156 (0%)

Query: 132 DAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNIL 191
           ++ E+L  M   GV PS+   +  F+      D     KL R M  DG   P  H++NI+
Sbjct: 226 ESLEILSRMREVGVRPSSSAISILFRLLLRVGDYGSVWKLLRGMIRDG-PRPCNHNFNIM 284

Query: 192 IGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 251
           I  F     + +   +   +      PD+ +Y +LI+    + +  +A  +   MI+ G 
Sbjct: 285 ILCFCQKGYLRVAESLLFVMPKFCCEPDVYAYNILINAYRIRGRTSDALGFLHLMIKNGC 344

Query: 252 LPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            P  +TF T+         +   R++ + + E  ++
Sbjct: 345 KPSLITFSTIITAFCNEGNVVEARKIFEGIQEVGLS 380


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 127/263 (48%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+ K   +D A     +M E+G+ PNVVTY+ L+NG+C+           K + 
Sbjct: 156 YNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCK----------TKEMD 205

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+V  +M   G+ P+  +++ ++H YS +   + S+     M    + P V   +S +
Sbjct: 206 KAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFM 265

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GRI++A ++   MV  G  P   +Y      Y       G   L+  M  +G+ 
Sbjct: 266 TALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGV- 324

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+ H +N LI  +  L  MD    ++ D+   G+ PD+ +++ +I   C   +  +A +
Sbjct: 325 VPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAME 384

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F  MI+ G+ P    +  L +G
Sbjct: 385 KFNHMIDTGVPPDTAVYSCLIQG 407



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 143/352 (40%), Gaps = 65/352 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           Y+SLI G CK   +D AER L +M+  GV PN +TYN L++G         S R  K   
Sbjct: 191 YSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMS 250

Query: 60  -----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLH--------- 87
                                  I+ A  +FD M ++G +PDV S+  +LH         
Sbjct: 251 SSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIA 310

Query: 88  --------------------------VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                                      Y+R      SL     M ++G+ P + T+S+V+
Sbjct: 311 GMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVI 370

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR++DA E    M+  GV P    Y+C  +    R+D   A +L   M   G+ 
Sbjct: 371 SAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIP 430

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P +  +  +I       R+   +++ + +  +G  P+L ++  L+ G C     KEA  
Sbjct: 431 PPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVG 490

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRR-LKKKLDEESITF 288
               M   G+ P   T+ TL  G  +     D L  +R  L K++   S+++
Sbjct: 491 LLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSY 542



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 127/269 (47%), Gaps = 16/269 (5%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
           P + TYN+L+N  C R +  P             VF  +   G+ PDV S++ ++  +S+
Sbjct: 116 PTIYTYNILIN--CYRRARRPDLGL--------PVFGRLLRTGLGPDVFSYNALIDGFSK 165

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
             +   + D    M+E+GI P V TYSS++  LC    ++ AE +L +MV  GV P+  T
Sbjct: 166 EGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMT 225

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           YNC    Y        +++++++M    L VP++ + N  +       R+   R+I++ +
Sbjct: 226 YNCLIHGYSTSGMWKESVRVFKEMSS-SLLVPDVGNCNSFMTALCKHGRIKEARDIFDSM 284

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR-----GLI 266
              G  PD+ SY  L+HG             F  M+ +G++P +  F TL       G++
Sbjct: 285 VLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMM 344

Query: 267 QSDMLRTWRRLKKKLDEESITFGSEFQNY 295
              +L      K+ ++ + ITF +    +
Sbjct: 345 DKSLLMFEDMTKQGVNPDIITFSTVISAF 373



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 135/281 (48%), Gaps = 19/281 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++++I  +C++ R+D A      MI+ GV P+   Y+ L+ G C R          + + 
Sbjct: 366 FSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNR----------RDLV 415

Query: 62  NAEKVFDEMRVRGIEPD-VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            A+++  +M  +GI P  +  F+ +++   +  +     D ++ +   G  P + T++S+
Sbjct: 416 KAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSL 475

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V   C  G +++A  LL  M   GV P   TYN     Y      + A+ L+R M    +
Sbjct: 476 VDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRV 535

Query: 181 CVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            + ++ SYNI++ G+F A  R  + +E+++++  SG+   + +Y  ++ GLC      EA
Sbjct: 536 TLTSV-SYNIILHGLFQA-RRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEA 593

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK 280
                 M+ + L    V F+ L   ++   M +  RR + K
Sbjct: 594 -----NMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAK 629



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 144/346 (41%), Gaps = 62/346 (17%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH------------ 51
           S +   CK  RI  A      M+ +G +P+V++Y  LL+G      +             
Sbjct: 263 SFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCE 322

Query: 52  ---PSERFEKTIRNAEK----------VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLS 98
              P      T+ NA            +F++M  +G+ PD+ +FS V+  + R  +   +
Sbjct: 323 GVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDA 382

Query: 99  LDKLNFMKEKGICPTVATYS------------------------------------SVVK 122
           ++K N M + G+ P  A YS                                    S++ 
Sbjct: 383 MEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIIN 442

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  GR+ + ++++  ++  G  P+  T+N     Y    +   A+ L   M+  G+  
Sbjct: 443 NLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGV-E 501

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++++YN L+  +    R+D    ++ D+    +     SY +++HGL + ++   A + 
Sbjct: 502 PDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEM 561

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
           F EMIE G+     T+ T+  GL +++       L +KL   ++ F
Sbjct: 562 FHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKF 607



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 120/260 (46%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + SL+ G+C +  +  A   L  M   GVEP++ TYN L++G C+             I 
Sbjct: 472 FNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGR----------ID 521

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +F +M  + +     S++I+LH   +A +  ++ +  + M E G+  ++ TY++V+
Sbjct: 522 DALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVL 581

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC     ++A  LL ++    V     T+N   +          A +L+  +   GL 
Sbjct: 582 GGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGL- 640

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP + +Y ++I   +     +    +++ ++ S   PD      +I  L  K +  +A  
Sbjct: 641 VPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGN 700

Query: 242 YFVEMIEKGLLPQKVTFETL 261
           Y  ++ +KG+LP+  T   L
Sbjct: 701 YLSKIDKKGILPEATTTSLL 720



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 97/219 (44%), Gaps = 26/219 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR-RASLHPSERFEKTI 60
           Y +L+ G+CK  RID A     +M+ + V    V+YN++L+G+ + R ++   E F + I
Sbjct: 507 YNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMI 566

Query: 61  -------------------RN-----AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                              RN     A  + +++    ++ D+ +F+IV+    +  + Q
Sbjct: 567 ESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQ 626

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + +    +   G+ PT+ TY  ++  L      EDA+ L   M ++   P +   N   
Sbjct: 627 EAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEII 686

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           +    + +   A     ++ + G+ +P   + ++LI +F
Sbjct: 687 RMLLNKGEVAKAGNYLSKIDKKGI-LPEATTTSLLIYLF 724


>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 332

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 138/280 (49%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L+ G C+  R+  AE  +  M+E G +PN VTY  ++NG+C+               
Sbjct: 13  FNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD----------TD 62

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  +M    I+ DV  ++ ++    +      + +    M +KGI P V TY+ ++
Sbjct: 63  SALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMI 122

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              CS G+  DAE+LL +M+ + V P   T+N     +      + A +LYR+M    + 
Sbjct: 123 DGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNI- 181

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN LI  F   +R+D  + I++ +   G  P++ +   LI G C  ++  +  +
Sbjct: 182 FPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIK 241

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
              EM+ +GL+P  V++ TL  G  Q+  L   + L +++
Sbjct: 242 LLHEMLRRGLVPDSVSYNTLIHGFCQAGDLNAAQDLFQEM 281



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 102/211 (48%), Gaps = 11/211 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT++I   CK      A+    EM ++G+ PNV+TYN +++G C               
Sbjct: 82  IYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCSYGKW---------- 131

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +AE++  +M    ++PDV +F+ +++ + +  +   + +    M  + I P   TY+S+
Sbjct: 132 TDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDTITYNSL 191

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C   R++DA+ +   MV  G  P+  T N         K  +  +KL  +M   GL
Sbjct: 192 IDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGL 251

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
            VP+  SYN LI  F     ++  ++++ ++
Sbjct: 252 -VPDSVSYNTLIHGFCQAGDLNAAQDLFQEM 281



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 6/196 (3%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M EKG    V  +++++  LC  GR+ +AE L+  MV NG  P+  TY           D
Sbjct: 1   MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD 60

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
            + A+ L R+M E  +   ++  Y  +I            + ++ ++   G+ P++ +Y 
Sbjct: 61  TDSALNLLRKMDESHI-KADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYN 119

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRR-LKK 279
            +I G C   KW +A Q   +MIE  + P  VTF  L    ++    S+    +R  L +
Sbjct: 120 CMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGR 179

Query: 280 KLDEESITFGSEFQNY 295
            +  ++IT+ S    +
Sbjct: 180 NIFPDTITYNSLIDGF 195


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 138/296 (46%), Gaps = 44/296 (14%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +LI+G CK   +    + L +M+ERG+  + +TYN L++G C+          E  ++  
Sbjct: 506 ALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCK----------EGKVKEG 555

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            ++ +EM  +GI+PD+ +F+++LH    A +   +    +  K+ G  P V TY  ++  
Sbjct: 556 FELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDG 615

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE------ 177
            C   ++E+ E LL E+V   +  ++  YN   + Y    + N A +L   MK       
Sbjct: 616 YCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLS 675

Query: 178 --------DGLC--------------------VPNMHSYNILIGMFMALNRMDMVREIWN 209
                    GLC                    +PN+  Y  +IG +  L +M+ V  +  
Sbjct: 676 CATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQ 735

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           ++    + P+  +YT++I G C+  K KEA +   EM EKG+LP  VT+     GL
Sbjct: 736 EMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGL 791



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 126/266 (47%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L++G C  ++ID A R   E  + G  PNV TY V+++G C+             + 
Sbjct: 574 FNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCK----------ANKVE 623

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             E + +E+  + +E +   ++ ++  Y        +    + MK +G+  + ATYSS++
Sbjct: 624 EGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLM 683

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+ G ++DA+ LL EM + G+ P+   Y      Y      N    + ++M    + 
Sbjct: 684 HGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNI- 742

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +Y I+I  F  L +     ++ N++   G+ PD  +Y    +GLC++ K +EA +
Sbjct: 743 HPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFK 802

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
              EM    +   ++T+ TL  G  Q
Sbjct: 803 VCDEMSSGAVCLDEITYTTLIDGCHQ 828



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 138/300 (46%), Gaps = 16/300 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+CK+  I  A +   +M+ +G+ PN VT N L+ G C+             I
Sbjct: 363 VYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCK----------SDQI 412

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE V +EM  RG+  +  SFS+V++      +   +L  +  M  + + P     +++
Sbjct: 413 GQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTL 472

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  LC  G+  +A EL   ++  G  P+  T N          +    +KL R M E GL
Sbjct: 473 VSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGL 532

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
               + +YN LI       ++    E+  ++   G+ PD+ ++ +L+HGLC   K  EA 
Sbjct: 533 VFDRI-TYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEAS 591

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           + + E  + G +P   T+  +  G  +++ +     L      KKL+  S+ + S  + Y
Sbjct: 592 RLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAY 651



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 140/311 (45%), Gaps = 26/311 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFE--- 57
           +++++I  +CK +R D A     +M + GV PNVVTYN +++G+C+   L  + RF+   
Sbjct: 258 LFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKM 317

Query: 58  ----------------------KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                 + I  A  V  EM   G  P+   ++ ++  Y +    
Sbjct: 318 VKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNI 377

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +L   + M  KGI P   T +S+++  C   +I  AE +L EM+  G+  +  +++  
Sbjct: 378 SEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMV 437

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                 +     A+   R+M    L  PN      L+       +     E+W  + G G
Sbjct: 438 INWLCLKFRFVTALHFIREMLLRNL-RPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKG 496

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
             P++ +   LIHGLC+    +E  +   +M+E+GL+  ++T+ TL  G  +   ++   
Sbjct: 497 FVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGF 556

Query: 276 RLKKKLDEESI 286
            LK+++ ++ I
Sbjct: 557 ELKEEMVKKGI 567



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 118/235 (50%), Gaps = 11/235 (4%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           + ++G+ P++ T   LL+ + +   L          + + +V+D + + GI PDV  FS 
Sbjct: 212 LAKKGLFPSLKTCTFLLSSLVKANEL----------KKSYEVYDFICLGGIIPDVHLFST 261

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           +++ + + H+   ++   + M++ G+ P V TY++++  LC  GR+++A     +MV+  
Sbjct: 262 MINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEK 321

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           V PS  TY+ F       +  + A  + ++M E G  VPN   YN LI  +  +  +   
Sbjct: 322 VSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGF-VPNEVVYNTLIDGYCKMGNISEA 380

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
            +I +D+   G+ P+  +   LI G C+  +  +A     EMI +GL   + +F 
Sbjct: 381 LKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFS 435



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 147/308 (47%), Gaps = 26/308 (8%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR----ASLH-------- 51
           SLI G+CK ++I  AE  L EMI RG+  N  ++++++N +C +     +LH        
Sbjct: 401 SLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLR 460

Query: 52  ---PSERFEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLS 98
              P++    T+ +          A +++  +  +G  P++ + + ++H   +A   Q +
Sbjct: 461 NLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQET 520

Query: 99  LDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158
           L  L  M E+G+     TY++++   C  G++++  EL  EMV+ G+ P   T+N     
Sbjct: 521 LKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHG 580

Query: 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218
                  + A +L+ + K++G  VPN+++Y ++I  +   N+++    + N++    L  
Sbjct: 581 LCNADKIDEASRLWHECKKNGY-VPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLEL 639

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
           +   Y  LI   C       A +   +M  +G+L    T+ +L  GL    ++   + L 
Sbjct: 640 NSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLL 699

Query: 279 KKLDEESI 286
            ++ +E +
Sbjct: 700 DEMRKEGL 707



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/151 (20%), Positives = 77/151 (50%), Gaps = 1/151 (0%)

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A ++   + + G+ PS +T            +   + ++Y  +   G+ +P++H ++ +I
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGI-IPDVHLFSTMI 263

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
             F   +R D    +++ ++  G+ P++ +Y  +IHGLC+  +  EA ++  +M+++ + 
Sbjct: 264 NAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVS 323

Query: 253 PQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           P  +T+     GLI+ + +     + K++ E
Sbjct: 324 PSLITYSVFINGLIKLEKIDEANCVLKEMSE 354



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           A  ++  + + GL  P++ +   L+   +  N +    E+++ +   G+ PD+  ++ +I
Sbjct: 205 AADVFSLLAKKGL-FPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMI 263

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +  C+  +  +A   F +M + G+ P  VT+  +  GL +S  L    R K+K+ +E ++
Sbjct: 264 NAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVS 323


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 134/285 (47%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK   +  A   + EM  +G EPNV+TY +L++  C+          E  + 
Sbjct: 392 YNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCK----------EGRLE 441

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V DEM  +G+  +   ++ ++    +  + Q +L+    M  KG  P + T++S++
Sbjct: 442 EARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLI 501

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   + E+A  L  +M+  GV  +  TYN     +  R     A+KL   M   G C
Sbjct: 502 FGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRG-C 560

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  +YN LI        ++    ++ D+   GL P+  S  +LI+GLC     + A +
Sbjct: 561 PLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALE 620

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +  +MI +GL P  VT+ +L  GL ++   +    L  KL  E I
Sbjct: 621 FLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGI 665



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 132/266 (49%), Gaps = 16/266 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI+   K+ R++   + L EM+  G  P+V T+N  ++G+C+   +H         
Sbjct: 254 VYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIH--------- 304

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+ D M +RG  P+  ++ +++H   R  +    +D+   +  K   P V  ++++
Sbjct: 305 -EAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGK----VDEARMLLNKVPNPNVVLFNTL 359

Query: 121 VKCLCSCGRIEDAEELLGE-MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +    S GR+++A+ ++ E M+  G  P   TYN        +     A +L  +M+  G
Sbjct: 360 INGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKG 419

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C PN+ +Y ILI  F    R++  R + +++ G GL  +   Y  LI  LC+ +K ++A
Sbjct: 420 -CEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDA 478

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGL 265
              F +M  KG  P   TF +L  GL
Sbjct: 479 LNMFGDMSSKGCKPDIFTFNSLIFGL 504



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 124/266 (46%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI   CK  ++  A    G+M  +G +P++ T+N L+ G+C+        +FE+   
Sbjct: 462 YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK------VNKFEE--- 512

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++ +M + G+  +  +++ ++H + R    Q +L  +N M  +G      TY+ ++
Sbjct: 513 -ALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLI 571

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC  G IE    L  +M+  G+ P+  + N          +   A++  R M   GL 
Sbjct: 572 KALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGL- 630

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN LI       R      +++ ++  G+ PD  +Y  LI   C++  + +A  
Sbjct: 631 TPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHL 690

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
                ++ G +P +VT+  L    I+
Sbjct: 691 LLSRGVDSGFIPNEVTWYILVSNFIK 716



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 120/264 (45%), Gaps = 18/264 (6%)

Query: 8   GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVF 67
             C +N +D A   L +M   G  PN + Y  L++ + +             +    K+ 
Sbjct: 226 ALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGR----------VNEVLKLL 275

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127
           +EM + G  PDV +F+  +H   +  +   +   ++ M  +G  P   TY  ++  LC  
Sbjct: 276 EEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRM 335

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDGLCVPNM 185
           G++++A  LL ++      P+   +N     Y  RGR D   A+ ++  M   G C P++
Sbjct: 336 GKVDEARMLLNKVPN----PNVVLFNTLINGYVSRGRLDEAKAV-MHESMLSVG-CGPDI 389

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
            +YN LI        +   RE+ N+++  G  P++ +YT+LI   C++ + +EA     E
Sbjct: 390 FTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDE 449

Query: 246 MIEKGLLPQKVTFETLYRGLIQSD 269
           M  KGL    V +  L   L + +
Sbjct: 450 MSGKGLALNAVGYNCLISALCKDE 473



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 113/263 (42%), Gaps = 19/263 (7%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           EM+ +G+ P V T+ V++  +C              + +A  +  +M   G  P+   + 
Sbjct: 207 EMLSKGISPTVYTFGVVMKALC----------LVNEVDSACALLKDMTRHGCVPNAIVYQ 256

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            ++H   +  +    L  L  M   G  P V T++  +  LC   RI +A +L+  M+  
Sbjct: 257 TLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLR 316

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G  P++ TY             + A  L  ++       PN+  +N LI  +++  R+D 
Sbjct: 317 GFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN-----PNVVLFNTLINGYVSRGRLDE 371

Query: 204 VREIWNDVKGS-GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
            + + ++   S G GPD+ +Y  LI GLC+K     A +   EM  KG  P  +T+  L 
Sbjct: 372 AKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILI 431

Query: 263 RGLIQSDMLRTWRRLKKKLDEES 285
               +   L   R +   LDE S
Sbjct: 432 DRFCKEGRLEEARNV---LDEMS 451



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 6/206 (2%)

Query: 63  AEKVFDEMR-VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           A ++  +MR V   EP   S+++VL V    + P++  +    M  KGI PTV T+  V+
Sbjct: 165 ATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVM 224

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC    ++ A  LL +M R+G  P+A  Y             N  +KL  +M   G C
Sbjct: 225 KALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMG-C 283

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+++++N  I     + R+    ++ + +   G  P+  +Y +L+HGLC   K  EA  
Sbjct: 284 IPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARM 343

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
               ++ K   P  V F TL  G + 
Sbjct: 344 ----LLNKVPNPNVVLFNTLINGYVS 365



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 2/162 (1%)

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
           +KG C     Y  ++  L + G  +  + LL +M + G+      +    K Y GR    
Sbjct: 104 QKGYCHMFDVYYMLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHY-GRAGLP 162

Query: 167 G-AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
           G A +L   M+    C P   SYN+++ + +A N   +V  ++ ++   G+ P + ++ +
Sbjct: 163 GQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGV 222

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           ++  LC   +   AC    +M   G +P  + ++TL   L +
Sbjct: 223 VMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXK 264


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 136/262 (51%), Gaps = 13/262 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI G+C+ + +  A   L EM +R + P+ V+Y  ++NG+C            K +  A 
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHC----------KDLSLAN 170

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           K+ ++M   G++P+V  +S ++  Y+   + + +   L+ M   G+ P +  Y++++ CL
Sbjct: 171 KLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL 230

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
              G++E+A   L E+   G+ P A T+  F   Y        A K + +M + GL +PN
Sbjct: 231 SKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGL-MPN 289

Query: 185 MHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
              Y +LI G F A N M+ +  I+  +   G+ PD+ + +  IHGL +  + +EA + F
Sbjct: 290 NPLYTVLINGHFKAGNLMEAL-SIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVF 348

Query: 244 VEMIEKGLLPQKVTFETLYRGL 265
            E+ EKGL+P   T+ +L  G 
Sbjct: 349 SELKEKGLVPDVFTYSSLISGF 370



 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 137/285 (48%), Gaps = 12/285 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + + I G+ K  ++  A ++  EM++ G+ PN   Y VL+NG  +  +L           
Sbjct: 258 FGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNL----------M 307

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F  +   G+ PDV + S  +H   +  + Q +L   + +KEKG+ P V TYSS++
Sbjct: 308 EALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI 367

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +E A EL  EM   G+ P+   YN          D   A KL+  M E GL 
Sbjct: 368 SGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGL- 426

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y+ +I  +     +     +++++   G+ P    Y  L+HG C++   ++A  
Sbjct: 427 EPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMN 486

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F EM++KG     ++F TL  G  +S  ++   +L +++  + I
Sbjct: 487 LFREMLQKG-FATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQI 530



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 135/279 (48%), Gaps = 15/279 (5%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           ++LI G+ +   ID   R    M+  G+  N++TYNVL++G+C+         F K  + 
Sbjct: 49  SALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCK---------FGKMEKA 99

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           AE +   M   G +P+  +F +++  Y R H    +L+ L+ M+++ + P+  +Y +++ 
Sbjct: 100 AE-ILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMIN 158

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC C  +  A +LL +M  +G+ P+   Y+     Y        A +L   M   G+  
Sbjct: 159 GLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGV-A 217

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++  YN +I       +M+       +++G GL PD  ++   I G  +  K  EA +Y
Sbjct: 218 PDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKY 277

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRL 277
           F EM++ GL+P    +  L  G  ++    + L  +R L
Sbjct: 278 FDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHL 316



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 144/324 (44%), Gaps = 30/324 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y++LI G+    RI+ A R L  M   GV P++  YN +++ + +   +  +  +   I
Sbjct: 187 VYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEI 246

Query: 61  RN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           +                          A K FDEM   G+ P+   ++++++ + +A   
Sbjct: 247 QGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNL 306

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +L     +   G+ P V T S+ +  L   GR+++A ++  E+   G+ P   TY+  
Sbjct: 307 MEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSL 366

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +  + +   A +L+ +M   G+  PN+  YN L+        +   R++++ +   G
Sbjct: 367 ISGFCKQGEVEKAFELHDEMCLKGI-APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG 425

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI-QSDM---L 271
           L PD  +Y+ +I G C+ +   EA   F EM  KG+ P    +  L  G   + DM   +
Sbjct: 426 LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAM 485

Query: 272 RTWRRLKKKLDEESITFGSEFQNY 295
             +R + +K    +++F +    Y
Sbjct: 486 NLFREMLQKGFATTLSFNTLIDGY 509



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 136/299 (45%), Gaps = 29/299 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI G+CK   ++ A     EM  +G+ PN+  YN L++G+C+             I+
Sbjct: 363 YSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGD----------IQ 412

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+FD M  +G+EPD  ++S ++  Y ++     +    + M  KG+ P    Y+++V
Sbjct: 413 RARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 472

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +E A  L  EM++ G   +  ++N     Y        A +L+++M    + 
Sbjct: 473 HGCCKEGDMEKAMNLFREMLQKGFATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQI- 530

Query: 182 VPNMHSYNILIGMFMALNRM-----------------DMVREIWNDVKGSGLGPDLDSYT 224
           +P+  +Y  +I       +M                 D V  ++  +   G+ PD  +Y 
Sbjct: 531 MPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYG 590

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           ++I+  C++    EA +   E++ KG+L +    + L   L + + L    +L  ++ E
Sbjct: 591 LVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGE 649



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 124/283 (43%), Gaps = 15/283 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI+G CK  +++ A   L  MI  G +PN  T+ +L+ G CR          E  + 
Sbjct: 83  YNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCR----------EHNMG 132

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ DEM  R + P   S+  +++         L+   L  M   G+ P V  YS+++
Sbjct: 133 RALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLI 192

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               S GRIE+A  LL  M  +GV P    YN              A     +++  GL 
Sbjct: 193 MGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGL- 251

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  ++   I  +    +M    + ++++   GL P+   YT+LI+G  +     EA  
Sbjct: 252 KPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALS 311

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKKK 280
            F  +   G+LP   T      GL+++    + L+ +  LK+K
Sbjct: 312 IFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEK 354



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 122/274 (44%), Gaps = 44/274 (16%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M E+G+ PN  TY ++  G+CR           K +  A+  F+EM+  G++PD  + S 
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRA----------KRMNEAKLTFEEMQKTGLKPDYNACSA 50

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           ++  + R       L   + M   GI   + TY+ ++  LC  G++E A E+L  M+  G
Sbjct: 51  LIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLG 110

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE--------------DGLC--------- 181
             P++ T+    + Y    +   A++L  +M++              +GLC         
Sbjct: 111 CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLAN 170

Query: 182 -----------VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
                       PN+  Y+ LI  + +  R++  R + + +  SG+ PD+  Y  +I  L
Sbjct: 171 KLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL 230

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            +  K +EA  Y +E+  +GL P  VTF     G
Sbjct: 231 SKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILG 264



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 134/294 (45%), Gaps = 29/294 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +L+ G CK   I  A +    M E+G+EP+ VTY+ +++G C+           + +
Sbjct: 397 IYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCK----------SENV 446

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F EM  +G++P    ++ ++H   +    + +++    M +KG   T+ +++++
Sbjct: 447 AEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTL-SFNTL 505

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY----------------NCFFKEYRGRK- 163
           +   C   +I++A +L  EM+   + P   TY                N  FKE + R  
Sbjct: 506 IDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNL 565

Query: 164 DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSY 223
             +    L+ +M   G+  P+  +Y ++I      + +    ++ ++V G G+      +
Sbjct: 566 IVDTVFALFEKMVAKGV-KPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIH 624

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            +LI  LC+++   EA +   EM E GL P      TL R   ++  +    R+
Sbjct: 625 DLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRV 678


>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
          Length = 592

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 139/290 (47%), Gaps = 17/290 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + S+I G CK  +++ AE  +  MIE+GVEPN +TYNV+++G C R  +           
Sbjct: 286 FNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMG---------- 335

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++FD M  +GIEPD+ S++ +++ Y    +   ++     + + G+ P++ T S ++
Sbjct: 336 RARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLL 395

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM---KED 178
           + L   GR E A+    EM   G  P+  T+      Y        AM  + ++   +ED
Sbjct: 396 RGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRRED 455

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
                N+  Y  +I       ++D     +  +   GL PD+ +YT +I G C++    E
Sbjct: 456 ----TNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDE 511

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
           A     +M + G LP   T+  + RG  +S  +   +   K++  +S +F
Sbjct: 512 AKDMLRKMEDNGCLPDNRTYNVIVRGFFRSSKVSEMKAFLKEIAGKSFSF 561



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 132/270 (48%), Gaps = 18/270 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGV-EPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +T+LI G    N++  A     +++   + EP+ V Y  +++G+C++             
Sbjct: 145 FTTLIRGLFAENKVKDAVHLFKKLVRENICEPDEVMYGTVMDGLCKKG------------ 192

Query: 61  RNAEKVFDEMRV--RGI-EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
            + +K FD +R+  +GI +PD   ++IV+  + +      +   LN MK+K I P + TY
Sbjct: 193 -HTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITY 251

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           +S++  L    + E    L  EM+   + P   T+N              A ++   M E
Sbjct: 252 TSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIE 311

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G+  PN  +YN+++  +    +M   R I++ +   G+ PD+ SYT LI+G  EK+K  
Sbjct: 312 KGV-EPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMD 370

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           +A Q F E+ + GL P  VT   L RGL +
Sbjct: 371 KAMQLFREISQNGLKPSIVTCSVLLRGLFE 400



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 146/291 (50%), Gaps = 17/291 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGV-EPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           MY +++ G CK      A   L  ++E+G+ +P+   YN++++  C+   L         
Sbjct: 180 MYGTVMDGLCKKGHTQKAFDLL-RLMEQGITKPDTCIYNIVIDAFCKDGMLD-------- 230

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
              A  + +EM+ + I PD+ +++ ++    +  Q +        M    I P V T++S
Sbjct: 231 --GATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNS 288

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           V+  LC  G++EDAEE++  M+  GV P+  TYN     Y  R     A +++  M + G
Sbjct: 289 VIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKG 348

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  P++ SY  LI  ++   +MD   +++ ++  +GL P + + ++L+ GL E  + + A
Sbjct: 349 I-EPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRTECA 407

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDM----LRTWRRLKKKLDEESI 286
             +F EM   G +P   T  TL  G  ++ +    +  + +L+++ ++ +I
Sbjct: 408 KIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNI 458



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 114/252 (45%), Gaps = 12/252 (4%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           +D A     +M+     P+ V+++ LL     +A +H      K   +   +F E+    
Sbjct: 53  LDDAFSLFRQMVTTKPLPSAVSFSKLL-----KALVH-----MKHYSSVVSIFREIHKLR 102

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           I  D  + S V++     H+  L    L    +KGI     T++++++ L +  +++DA 
Sbjct: 103 IPVDAFALSTVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAV 162

Query: 135 ELLGEMVRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
            L  ++VR  +C P    Y         +     A  L R M E G+  P+   YNI+I 
Sbjct: 163 HLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLM-EQGITKPDTCIYNIVID 221

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
            F     +D    + N++K   + PD+ +YT LI GL +  +W++    F+EMI   + P
Sbjct: 222 AFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYP 281

Query: 254 QKVTFETLYRGL 265
              TF ++  GL
Sbjct: 282 DVCTFNSVIDGL 293



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 124/293 (42%), Gaps = 22/293 (7%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           ++++   C ++R D+    L    ++G+  N VT+  L+ G+            E  +++
Sbjct: 111 STVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFA----------ENKVKD 160

Query: 63  AEKVFDEMRVRGI-EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           A  +F ++    I EPD   +  V+    +    Q + D L  M++    P    Y+ V+
Sbjct: 161 AVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVI 220

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G ++ A  LL EM +  + P   TY                  L+ +M    + 
Sbjct: 221 DAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNI- 279

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ ++N +I       +++   EI   +   G+ P+  +Y +++ G C + +   A +
Sbjct: 280 YPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARR 339

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
            F  MI+KG+ P  +++  L  G ++          KKK+D+    F    QN
Sbjct: 340 IFDSMIDKGIEPDIISYTALINGYVE----------KKKMDKAMQLFREISQN 382



 Score = 43.9 bits (102), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT++I G CK  ++D A     ++   G+ P+V+TY  +++G C+          E  +
Sbjct: 460 IYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQ----------EGLL 509

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ 94
             A+ +  +M   G  PD  ++++++  + R+ +
Sbjct: 510 DEAKDMLRKMEDNGCLPDNRTYNVIVRGFFRSSK 543



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 37/71 (52%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+C+   +D A+  L +M + G  P+  TYNV++ G  R + +   + F K I 
Sbjct: 496 YTAMISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGFFRSSKVSEMKAFLKEIA 555

Query: 62  NAEKVFDEMRV 72
                F+   V
Sbjct: 556 GKSFSFEAATV 566


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 134/285 (47%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK   +  A   + EM  +G EPNV+TY +L++  C+          E  + 
Sbjct: 17  YNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCK----------EGRLE 66

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V DEM  +G+  +   ++ ++    +  + Q +L+    M  KG  P + T++S++
Sbjct: 67  EARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLI 126

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   + E+A  L  +M+  GV  +  TYN     +  R     A+KL   M   G C
Sbjct: 127 FGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRG-C 185

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  +YN LI        ++    ++ D+   GL P+  S  +LI+GLC     + A +
Sbjct: 186 PLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALE 245

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +  +MI +GL P  VT+ +L  GL ++   +    L  KL  E I
Sbjct: 246 FLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGI 290



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 124/266 (46%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI   CK  ++  A    G+M  +G +P++ T+N L+ G+C+        +FE+   
Sbjct: 87  YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK------VNKFEE--- 137

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++ +M + G+  +  +++ ++H + R    Q +L  +N M  +G      TY+ ++
Sbjct: 138 -ALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLI 196

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC  G IE    L  +M+  G+ P+  + N          +   A++  R M   GL 
Sbjct: 197 KALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGL- 255

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN LI       R      +++ ++  G+ PD  +Y  LI   C++  + +A  
Sbjct: 256 TPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHL 315

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
                ++ G +P +VT+  L    I+
Sbjct: 316 LLSRGVDSGFIPNEVTWYILVSNFIK 341



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 1/173 (0%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M   G  P + TY++++  LC  G +  A EL+ EM   G  P+  TY      +     
Sbjct: 5   MLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGR 64

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
              A  +  +M   GL + N   YN LI       ++     ++ D+   G  PD+ ++ 
Sbjct: 65  LEEARNVLDEMSGKGLAL-NAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFN 123

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            LI GLC+  K++EA   + +M+ +G++   +T+ TL    ++   ++   +L
Sbjct: 124 SLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKL 176


>gi|15217756|ref|NP_171744.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806504|sp|Q9FZ19.2|PPR5_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g02420
 gi|332189307|gb|AEE27428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 491

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 126/234 (53%), Gaps = 11/234 (4%)

Query: 28  RGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 87
           +G++P+VVTYN L++  C+          ++ I  A K+ D+MR     PDV +++ V+ 
Sbjct: 240 KGLKPDVVTYNSLIDVYCK----------DREIEKAYKLIDKMREEEETPDVITYTTVIG 289

Query: 88  VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
                 QP  + + L  MKE G  P VA Y++ ++  C   R+ DA++L+ EMV+ G+ P
Sbjct: 290 GLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSP 349

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
           +A TYN FF+      D   + +LY +M  +  C+PN  S   LI MF    ++DM   +
Sbjct: 350 NATTYNLFFRVLSLANDLGRSWELYVRMLGNE-CLPNTQSCMFLIKMFKRHEKVDMAMRL 408

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           W D+   G G       +L+  LC+  K +EA +  +EM+EKG  P  V+F+ +
Sbjct: 409 WEDMVVKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRI 462



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+ P   TYN     Y   ++   A KL  +M+E+    P++ +Y  +IG    + + D 
Sbjct: 241 GLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEE-ETPDVITYTTVIGGLGLIGQPDK 299

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            RE+  ++K  G  PD+ +Y   I   C  ++  +A +   EM++KGL P   T+   +R
Sbjct: 300 AREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFR 359

Query: 264 GL-IQSDMLRTW 274
            L + +D+ R+W
Sbjct: 360 VLSLANDLGRSW 371


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 144/289 (49%), Gaps = 26/289 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV---------------C 45
           +YT+LI G CK   + +A+    +M   G+ PN  TY+VL+NG                 
Sbjct: 195 IYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENM 254

Query: 46  RRASLHPSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           +R+ + P+             +  +  A KVF EMR +GI   V +++I++    R  + 
Sbjct: 255 KRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKF 314

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             ++  ++ + + G+ P + TY+ ++   C   +++ A  L  ++  +G+ P+  TYN  
Sbjct: 315 GEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTL 374

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y   ++  GA+ L ++M+E  +  P+  +Y ILI  F  LN  +   E+ + ++ SG
Sbjct: 375 IAGYSKVENLAGALDLVKEMEERCI-APSKVTYTILIDAFARLNHTEKACEMHSLMEKSG 433

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           L PD+ +Y++L+HGLC     KEA + F  + E  L P  V + T+  G
Sbjct: 434 LVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHG 482



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 128/262 (48%), Gaps = 11/262 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G C+  +   A + + ++ + G+ PN+VTYN+L+NG C            + + 
Sbjct: 301 YNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDV----------RKMD 350

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F++++  G+ P + +++ ++  YS+      +LD +  M+E+ I P+  TY+ ++
Sbjct: 351 SAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILI 410

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                    E A E+   M ++G+ P   TY+          +   A KL++ + E  L 
Sbjct: 411 DAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHL- 469

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN   YN +I  +           + N++  SG+ P++ S+   I  LC  +KWKEA  
Sbjct: 470 QPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKEAEL 529

Query: 242 YFVEMIEKGLLPQKVTFETLYR 263
              +MI  GL P    ++ +++
Sbjct: 530 LLGQMINSGLKPSVSLYKMVHK 551



 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 140/322 (43%), Gaps = 47/322 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +++  +   +  D A  FL  MI  G  P   T+N LL  + R      S  F+K  
Sbjct: 91  LYDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIR------SNYFDK-- 142

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F+E++ + +  D  SF I++     A         L  ++E G+ P V  Y+++
Sbjct: 143 --AWWIFNELKSK-VVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTL 199

Query: 121 VKCLCSCGRIEDAEEL------LG-----------------------------EMVRNGV 145
           +   C  G +  A+ L      LG                              M R+G+
Sbjct: 200 IDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGI 259

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P+A  YNC   EY      + A K++ +M+E G+    M +YNILIG      +     
Sbjct: 260 VPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVM-TYNILIGGLCRGKKFGEAV 318

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           ++ + V   GL P++ +Y +LI+G C+ +K   A + F ++   GL P  VT+ TL  G 
Sbjct: 319 KLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGY 378

Query: 266 IQSDMLRTWRRLKKKLDEESIT 287
            + + L     L K+++E  I 
Sbjct: 379 SKVENLAGALDLVKEMEERCIA 400



 Score = 44.3 bits (103), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I+G+CK      A R L EM++ G+ PNV ++   +  +CR          ++  
Sbjct: 475 IYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCR----------DEKW 524

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIV 85
           + AE +  +M   G++P V+ + +V
Sbjct: 525 KEAELLLGQMINSGLKPSVSLYKMV 549


>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
 gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
          Length = 487

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 137/266 (51%), Gaps = 12/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ GW +   +        +M+  G +P++VTY ++++ +C+             + 
Sbjct: 210 YSILLEGWGRAPNLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGR----------VE 259

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V  +M  RG +P    +S+++H Y    + + ++     M++ GI P V  Y+++V
Sbjct: 260 EAVCVVQDMSSRGCQPTTFIYSVLVHTYGVDMRIEDAVATFLDMEKDGIVPDVVVYNALV 319

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   + ++A  ++ +M  +G+ P++ T+N            + A +++R M +   C
Sbjct: 320 TAFCKVKKFDNAFRVMDDMEGHGISPNSRTWNIILNTLISLGKDDEAYRVFRNMIKR--C 377

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y ++I MF   ++++M  ++W  ++     P + ++++LI+GLC+K +  +AC 
Sbjct: 378 KPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACV 437

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +MIEKG+ P   TF  L + L++
Sbjct: 438 LLEDMIEKGIRPPGSTFGKLRQLLLK 463



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 126/298 (42%), Gaps = 46/298 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ ++  + +  + D A      M   GV  N+  +N LL  +C+           K +R
Sbjct: 141 FSIIMRKYARAQKFDEAVYTFNIMERYGVAHNLAAFNSLLGALCK----------SKNVR 190

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++FD+M  R   PD  ++SI+L  + RA       +  + M   G  P + TY  +V
Sbjct: 191 KAQEIFDKMNNR-FSPDAKTYSILLEGWGRAPNLPKMREVYSDMLAAGCQPDIVTYGIMV 249

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+E+A  ++ +M   G  P+   Y+     Y        A+  +  M++DG+ 
Sbjct: 250 DALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSVLVHTYGVDMRIEDAVATFLDMEKDGI- 308

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG------------------------ 217
           VP++  YN L+  F  + + D    + +D++G G+                         
Sbjct: 309 VPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGISPNSRTWNIILNTLISLGKDDEAYR 368

Query: 218 ----------PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
                     PD D+YTM+I   CE  K + A + +  M  K  LP   TF  L  GL
Sbjct: 369 VFRNMIKRCKPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGL 426



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 103/225 (45%), Gaps = 3/225 (1%)

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           MR  G+  +V +FSI++  Y+RA +   ++   N M+  G+   +A ++S++  LC    
Sbjct: 130 MRKEGV-ANVETFSIIMRKYARAQKFDEAVYTFNIMERYGVAHNLAAFNSLLGALCKSKN 188

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           +  A+E+  +M  N   P A+TY+   + +    +     ++Y  M   G C P++ +Y 
Sbjct: 189 VRKAQEIFDKM-NNRFSPDAKTYSILLEGWGRAPNLPKMREVYSDMLAAG-CQPDIVTYG 246

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
           I++       R++    +  D+   G  P    Y++L+H      + ++A   F++M + 
Sbjct: 247 IMVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSVLVHTYGVDMRIEDAVATFLDMEKD 306

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           G++P  V +  L     +        R+   ++   I+  S   N
Sbjct: 307 GIVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGISPNSRTWN 351



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 85/168 (50%), Gaps = 17/168 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +L+  +CK+ + D A R + +M   G+ PN  T+N++LN +    SL   +   +  
Sbjct: 314 VYNALVTAFCKVKKFDNAFRVMDDMEGHGISPNSRTWNIILNTLI---SLGKDDEAYRVF 370

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           RN         ++  +PD  ++++++ ++    + +++L    +M+ K   P++ T+S +
Sbjct: 371 RNM--------IKRCKPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVL 422

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY----NCFFKEYRGRKD 164
           +  LC  G +  A  LL +M+  G+ P   T+        KE  GRKD
Sbjct: 423 INGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKE--GRKD 468


>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
 gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 143/264 (54%), Gaps = 12/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G  +  R+D A     +M+++  +P+V+TY  L++G+C+           K   
Sbjct: 555 YTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKL----------KKSS 604

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +FD M    + PD+  ++++++++SR    + +L     + E+G  P V T+++++
Sbjct: 605 AGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMI 664

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            C C+  R++DA +L  +M    + P+A T+      +      + AM ++ +M E+G  
Sbjct: 665 CCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGP- 723

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            PN+ +Y+ LI G F + + M+   +++N++  + + P++ SY++LI GLC++   KEA 
Sbjct: 724 EPNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEAS 783

Query: 241 QYFVEMIEKGLLPQKVTFETLYRG 264
             F   ++K LLP  + +  L RG
Sbjct: 784 CAFRCALDKHLLPDVIAYTILIRG 807



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 133/288 (46%), Gaps = 12/288 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+ LI G CK   +  A RF  + + RG+ PNV T N LL+  CR           K I
Sbjct: 484 VYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRL----------KCI 533

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A KV+  M +  I+ D  +++I++   ++  +   +L     M +K   P V TY ++
Sbjct: 534 VGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTL 593

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   +      +   M +N V P    YN     +        A+ L+  + E G 
Sbjct: 594 IDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGP 653

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ ++N +I  +    R+D   +++  +    L P+  ++T+LI   C + +  +A 
Sbjct: 654 -KPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAM 712

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS-DMLRTWRRLKKKLDEESIT 287
             F +M+E+G  P  VT+  L  G  +S  M+ +  +L  ++ E +I 
Sbjct: 713 LMFSKMLEEGPEPNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENNIA 760



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 124/289 (42%), Gaps = 26/289 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           +++LI  +CK   +D A      M   GV P+++ Y++L++G+ +   L   +R      
Sbjct: 310 FSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVAL 369

Query: 56  ----------FEKTIRNAEKVFDEMRV---------RGIEPDVTSFSIVLHVYSRAHQPQ 96
                     F   +    K+ D  RV          GI P+V S SI++  + +  +  
Sbjct: 370 DKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRIL 429

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      + + G  P++ TYS+++   C  G + D   L  +M++    P    Y+   
Sbjct: 430 EACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLI 489

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                +     A++ + Q    GL  PN+ + N L+  F  L  +    +++  +    +
Sbjct: 490 NGLCKQGLVGDALRFFFQAVNRGLS-PNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNI 548

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
             D  +YT+LI G  +  +  EA   F +M++K   P  +T+ TL  GL
Sbjct: 549 KADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGL 597



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 117/263 (44%), Gaps = 11/263 (4%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           ++M  RF   +++ G   +++T N +L G+            +  I  A+  F+ +   G
Sbjct: 253 VEMGLRFHKALVQGGFGLDIITCNKILKGI----------WMQNDIGVADDYFNMVVRIG 302

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
            +P+V +FS ++  Y +      +    + M   G+ P +  YS ++  L   GR+ED +
Sbjct: 303 PKPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQ 362

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
            LL   +  G+      ++     Y    D    +++Y++M  +G+  PN+ S +ILI  
Sbjct: 363 RLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGIS-PNVVSCSILIKG 421

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
           F    R+     ++  +   G  P + +Y+ LI G C+    ++    + +MI+K   P 
Sbjct: 422 FCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPD 481

Query: 255 KVTFETLYRGLIQSDMLRTWRRL 277
            + +  L  GL +  ++    R 
Sbjct: 482 TIVYSVLINGLCKQGLVGDALRF 504



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 115/249 (46%), Gaps = 11/249 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N I +A+ +   ++  G +PNVVT++ L++  C+          E  +  A  +FD M  
Sbjct: 286 NDIGVADDYFNMVVRIGPKPNVVTFSTLIDAYCK----------EGNLDKAFVLFDVMAG 335

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
            G+ PD+  +SI++    +A + +     L    +KGI   V  +SS +      G +  
Sbjct: 336 NGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGR 395

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
             ++   M+  G+ P+  + +   K +        A  L+ Q+ + G   P++ +Y+ LI
Sbjct: 396 VIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGF-EPSILTYSALI 454

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
             F     +     ++ D+      PD   Y++LI+GLC++    +A ++F + + +GL 
Sbjct: 455 AGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLS 514

Query: 253 PQKVTFETL 261
           P   T  TL
Sbjct: 515 PNVFTLNTL 523


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 145/293 (49%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+ K   +D A     EM++RG+ PNVVTY+ ++  +C+           + + 
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCK----------AQAMD 251

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V   M   G+ P+  +++ ++H Y  + QP+ ++  L  M   G+ P V TY+S++
Sbjct: 252 KAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLM 311

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A ++   M + G+ P   TY    + Y  +        L   M  +G+ 
Sbjct: 312 DYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI- 370

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN + ++ILI  +    ++D    +++ ++  GL PD  +Y  +I  LC+  + ++A +
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           YF +MI++ L P  + + +L   L   D     + L  ++ +  I   + F N
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFN 483



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 138/297 (46%), Gaps = 19/297 (6%)

Query: 2   YTSLIYGWCKINRI-DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +T L+ G C   R  D  +  L  M + G  PNV +YN+LL G+C           E   
Sbjct: 129 FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCD----------ENRS 178

Query: 61  RNAEKVFDEMRVRGIE--PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           + A ++   M   G +  PDV S++ V++ + +      +    + M ++GI P V TYS
Sbjct: 179 QEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYS 238

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           S++  LC    ++ A E+L  MV+NGV P+  TYN     Y        A+   ++M  D
Sbjct: 239 SIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSD 298

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P++ +YN L+       R    R++++ +   GL P++ +Y  L+ G   K    E
Sbjct: 299 GV-EPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357

Query: 239 ACQYFVEMIEKGLLPQKVTFETLY-----RGLIQSDMLRTWRRLKKKLDEESITFGS 290
                  M+  G+ P    F  L      +G +   ML   +  ++ L+ +++T+G+
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGT 414



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 138/304 (45%), Gaps = 58/304 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+++G+C   +   A  FL +M   GVEP+VVTYN L++ +C+               
Sbjct: 272 YNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGR----------CT 321

Query: 62  NAEKVFDEMRVRGIEPDVTS-----------------------------------FSIVL 86
            A K+FD M  RG++P++T+                                   FSI++
Sbjct: 322 EARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI 381

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
             Y++  +   ++   + M+++G+ P   TY +V+  LC  GR+EDA     +M+   + 
Sbjct: 382 CAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLS 441

Query: 147 PSAETYN------CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
           P    YN      C F ++      + A +L  +M + G+C+  +  +N +I       R
Sbjct: 442 PGNIVYNSLIHSLCIFDKW------DKAKELILEMLDRGICLDTIF-FNSIIDSHCKEGR 494

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           +    ++++ +   G+ PD+ +Y+ LI G C   K  EA +    M+  G+ P  VT+ T
Sbjct: 495 VIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNT 554

Query: 261 LYRG 264
           L  G
Sbjct: 555 LING 558



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 152/343 (44%), Gaps = 57/343 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SLI+  C  ++ D A+  + EM++RG+  + + +N +++  C+          E  +
Sbjct: 446 VYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCK----------EGRV 495

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             +EK+FD M   G++PD+ ++S ++  Y  A +   +   L  M   G+ P   TY+++
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG- 179
           +   C   R+EDA  L  EM  +GV P   TYN   +     +    A +LY  + E G 
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT 615

Query: 180 -----------------------------LCVPNMH----SYNILIGMFMALNRMDMVRE 206
                                        LC+ ++     ++NI+IG  + + R D  ++
Sbjct: 616 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKD 675

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++  +  +GL PD+ +Y+++   L E+   +E    F+ M E G         ++ R L+
Sbjct: 676 LFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLL 735

Query: 267 Q-SDMLRTWRRL----KKKLDEESITF--------GSEFQNYH 296
           Q  D+ R    L    +K    E+ T         G ++Q YH
Sbjct: 736 QRGDITRAGTYLFMIDEKHFSLEASTASLFLDLLSGGKYQEYH 778



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 135/292 (46%), Gaps = 26/292 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKT 59
           +++ LI  + K  ++D A     +M ++G+ P+ VTY  ++  +C+   +  + R FE+ 
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 60  I------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           I                          A+++  EM  RGI  D   F+ ++  + +  + 
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             S    + M   G+ P + TYS+++   C  G++++A +LL  MV  G+ P   TYN  
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y        A+ L+R+M+  G+  P++ +YNI++       R    +E++  +  SG
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVS-PDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +L +Y +++HGLC+     EA + F  +    L  +  TF  +   L++
Sbjct: 615 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 666



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 125/281 (44%), Gaps = 27/281 (9%)

Query: 30  VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89
           V PN+ TY +L+   C    L   +     + N  K       +G   D  +F+ +L   
Sbjct: 87  VTPNLCTYGILIGSCCCAGRL---DLGFAALGNVIK-------KGFRVDAIAFTPLLKGL 136

Query: 90  SRAHQPQLSLD-KLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV-CP 147
               +   ++D  L  M + G  P V +Y+ ++K LC   R ++A ELL  M  +G  CP
Sbjct: 137 CADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCP 196

Query: 148 S-----AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202
                     N FFKE     D + A   Y +M + G+ +PN+ +Y+ +I        MD
Sbjct: 197 PDVVSYTTVINGFFKE----GDLDKAYGTYHEMLDRGI-LPNVVTYSSIIAALCKAQAMD 251

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
              E+   +  +G+ P+  +Y  ++HG C   + KEA  +  +M   G+ P  VT+ +L 
Sbjct: 252 KAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLM 311

Query: 263 RGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNYHFK 298
             L ++      R++     K+ L  E  T+G+  Q Y  K
Sbjct: 312 DYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352



 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 108/218 (49%), Gaps = 12/218 (5%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG---ICPTVATYS 118
           +A  VFDE+  RG    +   +  L   +R H P  ++ + N M   G   + P + TY 
Sbjct: 37  DARHVFDELLRRGRGASIYGLNCALADVAR-HSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL-YRQMKE 177
            ++   C  GR++     LG +++ G    A  +    K     K  + AM +  R+M +
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 178 DGLCVPNMHSYNILIGMFMALNR----MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
            G C+PN+ SYNIL+      NR    +++++ + +D  G    PD+ SYT +I+G  ++
Sbjct: 156 LG-CIPNVFSYNILLKGLCDENRSQEALELLQMMPDD--GGDCPPDVVSYTTVINGFFKE 212

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
               +A   + EM+++G+LP  VT+ ++   L ++  +
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAM 250


>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
 gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 136/264 (51%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK   ++ AE  + EM  RG++ N + YN L++G C+R            I 
Sbjct: 74  YGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRG----------LID 123

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KV   M  +G E D+ + + +     + +QP+ +   L  M EKG+ P V +Y++++
Sbjct: 124 EAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLI 183

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G   +A++L  EM + G  P+A TYN     +  +     A +L  +M+  G+ 
Sbjct: 184 DIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGI- 242

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++++Y  L+       ++D   E++N+V+  GL  ++ +YT +I GL ++ + +EA +
Sbjct: 243 FPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFK 302

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            + EM E GL P    + +L   L
Sbjct: 303 LYDEMTEAGLTPDDRVYTSLVSSL 326



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 137/287 (47%), Gaps = 11/287 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT +I   CKI     A     E+ E+G+  NV TY  L++GVC+   +          
Sbjct: 38  VYTVVINWNCKIGNTKRAFALFDELTEKGLVANVHTYGALIDGVCKAGEMEA-------- 89

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE + +EM+ RG++ +   ++ ++  Y +      +      M++KG    + T +++
Sbjct: 90  --AEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTI 147

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              L    + E+A+  L  M+  GV P+  +Y      Y    +   A KL+++MK+ G 
Sbjct: 148 ADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAG- 206

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  +YN+LI       RM    E+ ++++  G+ PD+ +YT L+HG C   K  +A 
Sbjct: 207 GEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAV 266

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           + F E+ +KGL    VT+  +  GL +        +L  ++ E  +T
Sbjct: 267 ELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFKLYDEMTEAGLT 313



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 36/240 (15%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           I   E++F+EM  +GI+ D+  +++V++   +    + +    + + EKG+   V TY +
Sbjct: 17  IDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDELTEKGLVANVHTYGA 76

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKD------------- 164
           ++  +C  G +E AE L+ EM   G+  +   YN     Y  RG  D             
Sbjct: 77  LIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLIDEAFKVQVIMEKKG 136

Query: 165 -----------ANGAMKLYR---------QMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
                      A+G  KL +          M E G+ VPN+ SY  LI ++         
Sbjct: 137 FENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGV-VPNVVSYTTLIDIYCKEGNFVEA 195

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           ++++ ++K +G  P+  +Y +LI G  +K + KEA +   EM  KG+ P   T+ +L  G
Sbjct: 196 KKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHG 255



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 1/152 (0%)

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           VATY+ ++    S G+I++ E +  EM   G+      Y           +   A  L+ 
Sbjct: 1   VATYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFD 60

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           ++ E GL V N+H+Y  LI        M+    + N+++  GL  +   Y  LI G C++
Sbjct: 61  ELTEKGL-VANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKR 119

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
               EA +  V M +KG      T  T+  GL
Sbjct: 120 GLIDEAFKVQVIMEKKGFENDIYTLNTIADGL 151



 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 43/82 (52%)

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
           +Y +LI    +  ++D V  ++ ++   G+  D+  YT++I+  C+    K A   F E+
Sbjct: 3   TYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDEL 62

Query: 247 IEKGLLPQKVTFETLYRGLIQS 268
            EKGL+    T+  L  G+ ++
Sbjct: 63  TEKGLVANVHTYGALIDGVCKA 84


>gi|9857539|gb|AAG00894.1|AC064879_12 Hypothetical protein [Arabidopsis thaliana]
          Length = 490

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 126/234 (53%), Gaps = 11/234 (4%)

Query: 28  RGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 87
           +G++P+VVTYN L++  C+          ++ I  A K+ D+MR     PDV +++ V+ 
Sbjct: 239 KGLKPDVVTYNSLIDVYCK----------DREIEKAYKLIDKMREEEETPDVITYTTVIG 288

Query: 88  VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
                 QP  + + L  MKE G  P VA Y++ ++  C   R+ DA++L+ EMV+ G+ P
Sbjct: 289 GLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSP 348

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
           +A TYN FF+      D   + +LY +M  +  C+PN  S   LI MF    ++DM   +
Sbjct: 349 NATTYNLFFRVLSLANDLGRSWELYVRMLGNE-CLPNTQSCMFLIKMFKRHEKVDMAMRL 407

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           W D+   G G       +L+  LC+  K +EA +  +EM+EKG  P  V+F+ +
Sbjct: 408 WEDMVVKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRI 461



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+ P   TYN     Y   ++   A KL  +M+E+    P++ +Y  +IG    + + D 
Sbjct: 240 GLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEE-ETPDVITYTTVIGGLGLIGQPDK 298

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            RE+  ++K  G  PD+ +Y   I   C  ++  +A +   EM++KGL P   T+   +R
Sbjct: 299 AREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFR 358

Query: 264 GL-IQSDMLRTW 274
            L + +D+ R+W
Sbjct: 359 VLSLANDLGRSW 370


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 131/263 (49%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I+G+     I+ A R L  M  +G+EP+  TY  L++G+C+          E  + 
Sbjct: 211 YNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCK----------EGRLE 260

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +FD+M   G+ P+  +++ ++  Y      + +    + M +KGI P+V+TY+ +V
Sbjct: 261 EASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLV 320

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+ +A++++ EM + G+ P A TYN     Y    +A  A  L+ +M   G+ 
Sbjct: 321 HALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGI- 379

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P   +Y  LI +    NRM    +++  +   G+ PD+  +  +I G C     + A  
Sbjct: 380 EPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFM 439

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
              EM  K + P +VTF TL +G
Sbjct: 440 LLKEMDRKSVPPDEVTFNTLMQG 462



 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 136/289 (47%), Gaps = 26/289 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH---------- 51
           Y SLI G CK  R++ A     +M+E G+ PN VTYN L++G C +  L           
Sbjct: 246 YGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMV 305

Query: 52  -----PSER----------FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                PS             E  +  A+ +  EMR +GI PD  +++I+++ YSR    +
Sbjct: 306 KKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAK 365

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + D  N M  KGI PT  TY+S++  L    R+++A++L  +++  GV P    +N   
Sbjct: 366 RAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMI 425

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +    +   A  L ++M    +  P+  ++N L+       +++  R + +++K  G+
Sbjct: 426 DGHCANGNVERAFMLLKEMDRKSV-PPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGI 484

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            PD  SY  LI G   +   K+A     EM+  G  P  +T+  L + L
Sbjct: 485 KPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCL 533



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 135/273 (49%), Gaps = 11/273 (4%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           ++  A  F+G M   G +PNVV+YN +++G   R +          I  A ++ D MRV+
Sbjct: 188 KLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGN----------IEGARRILDAMRVK 237

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           GIEPD  ++  ++    +  + + +    + M E G+ P   TY++++   C+ G +E A
Sbjct: 238 GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 297

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
                EMV+ G+ PS  TYN              A  + ++M++ G+ +P+  +YNILI 
Sbjct: 298 FSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGI-IPDAITYNILIN 356

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
            +          ++ N++   G+ P   +YT LI+ L  + + KEA   F +++++G+ P
Sbjct: 357 GYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSP 416

Query: 254 QKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             + F  +  G   +  +     L K++D +S+
Sbjct: 417 DVIMFNAMIDGHCANGNVERAFMLLKEMDRKSV 449



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 118/232 (50%), Gaps = 1/232 (0%)

Query: 56  FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA 115
            E  ++ A +    M   G +P+V S++ ++H YS     + +   L+ M+ KGI P   
Sbjct: 185 LEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSY 244

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           TY S++  +C  GR+E+A  L  +MV  G+ P+A TYN     Y  + D   A     +M
Sbjct: 245 TYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEM 304

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            + G+ +P++ +YN+L+       RM    ++  +++  G+ PD  +Y +LI+G      
Sbjct: 305 VKKGI-MPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGN 363

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            K A     EM+ KG+ P  VT+ +L   L + + ++    L +K+ ++ ++
Sbjct: 364 AKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS 415



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 10/152 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+ ++I G C    ++ A   L EM  + V P+ VT+N L+ G CR          E  +
Sbjct: 420 MFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCR----------EGKV 469

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + DEM+ RGI+PD  S++ ++  Y R    + +    + M   G  PT+ TY+++
Sbjct: 470 EEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNAL 529

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
           +KCLC     + AEELL EMV  G+ P   TY
Sbjct: 530 IKCLCKNQEGDLAEELLKEMVNKGISPDDSTY 561



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 96/191 (50%), Gaps = 11/191 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLIY   + NR+  A+    +++++GV P+V+ +N +++G C   +          + 
Sbjct: 386 YTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGN----------VE 435

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  EM  + + PD  +F+ ++    R  + + +   L+ MK +GI P   +Y++++
Sbjct: 436 RAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLI 495

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G I+DA  +  EM+  G  P+  TYN   K     ++ + A +L ++M   G+ 
Sbjct: 496 SGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGIS 555

Query: 182 VPNMHSYNILI 192
            P+  +Y  LI
Sbjct: 556 -PDDSTYLSLI 565


>gi|356560497|ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Glycine max]
          Length = 490

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 140/280 (50%), Gaps = 13/280 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +   I+GWCKI R+D A   + EM   G  P V++Y+ L+   C+          E    
Sbjct: 215 FNIFIHGWCKICRVDEAHWTIQEMKGYGFHPCVISYSTLIQCYCQ----------EGNFS 264

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++ DEM+ +G   +V +++ ++    +A + + +L     M+  G  P    ++S++
Sbjct: 265 RVYELLDEMQAQGCSANVITYTSIMCALGKAKKFEEALKVPERMRSSGCRPDTLFFNSLI 324

Query: 122 KCLCSCGRIEDAEELLG-EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             L   GR++DA ++   EM + GV P+  TYN     +        A+++ ++M+  G 
Sbjct: 325 HTLGRAGRLDDAADVFKVEMPKAGVSPNTSTYNSMISMFCYHAQEKRALEILKEMENSGG 384

Query: 181 CVPNMHSYNILIGMFMALNRMD-MVREIWND-VKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           C P+  +Y+ LI       ++D ++ EI ND +    L  DL +YT+LIHGLC + +   
Sbjct: 385 CKPDAQTYHPLIKSCFRSGKIDGVLSEILNDMINKQHLSLDLSTYTLLIHGLCREDRCNW 444

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
           A   F EMI++ ++P+  T   L   + Q +M +   +++
Sbjct: 445 AFSLFEEMIDQDIIPRYRTCRLLLDEVKQKNMYQAAEKIE 484



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 115/253 (45%), Gaps = 14/253 (5%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A R   ++   G+E N  + N+LL+ +C+          EK ++ A ++F E++ + I P
Sbjct: 162 AVRIFDDLQALGLEKNTESMNLLLDTLCK----------EKFVQQAREIFLELK-QHIAP 210

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           +  +F+I +H + +  +   +   +  MK  G  P V +YS++++C C  G      ELL
Sbjct: 211 NAHTFNIFIHGWCKICRVDEAHWTIQEMKGYGFHPCVISYSTLIQCYCQEGNFSRVYELL 270

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            EM   G   +  TY          K    A+K+  +M+  G C P+   +N LI     
Sbjct: 271 DEMQAQGCSANVITYTSIMCALGKAKKFEEALKVPERMRSSG-CRPDTLFFNSLIHTLGR 329

Query: 198 LNRMDMVREIWN-DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-GLLPQK 255
             R+D   +++  ++  +G+ P+  +Y  +I   C   + K A +   EM    G  P  
Sbjct: 330 AGRLDDAADVFKVEMPKAGVSPNTSTYNSMISMFCYHAQEKRALEILKEMENSGGCKPDA 389

Query: 256 VTFETLYRGLIQS 268
            T+  L +   +S
Sbjct: 390 QTYHPLIKSCFRS 402



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 82/185 (44%), Gaps = 3/185 (1%)

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           S+ +++ +  R    +   D L  M+E G+   + T +  ++     G+  DA  +  ++
Sbjct: 111 SYDMMVDILGRMKVMEKLRDLLEEMREGGLV-NMNTVAKAMRRFVGAGQWVDAVRIFDDL 169

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
              G+  + E+ N         K    A +++ ++K+     PN H++NI I  +  + R
Sbjct: 170 QALGLEKNTESMNLLLDTLCKEKFVQQAREIFLELKQH--IAPNAHTFNIFIHGWCKICR 227

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           +D       ++KG G  P + SY+ LI   C++  +    +   EM  +G     +T+ +
Sbjct: 228 VDEAHWTIQEMKGYGFHPCVISYSTLIQCYCQEGNFSRVYELLDEMQAQGCSANVITYTS 287

Query: 261 LYRGL 265
           +   L
Sbjct: 288 IMCAL 292



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 12/179 (6%)

Query: 2   YTSLIYGWCKINRID-MAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           + SLI+   +  R+D  A+ F  EM + GV PN  TYN +++  C  A    +    K +
Sbjct: 320 FNSLIHTLGRAGRLDDAADVFKVEMPKAGVSPNTSTYNSMISMFCYHAQEKRALEILKEM 379

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKL--NFMKEKGICPTVATYS 118
            N+          G +PD  ++  ++    R+ +    L ++  + + ++ +   ++TY+
Sbjct: 380 ENSG---------GCKPDAQTYHPLIKSCFRSGKIDGVLSEILNDMINKQHLSLDLSTYT 430

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
            ++  LC   R   A  L  EM+   + P   T      E + +     A K+   MK+
Sbjct: 431 LLIHGLCREDRCNWAFSLFEEMIDQDIIPRYRTCRLLLDEVKQKNMYQAAEKIEDLMKK 489


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 139/301 (46%), Gaps = 26/301 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           Y  +I   CK   ++ A   + +MIE G  P+VVTYN +++G+C+               
Sbjct: 83  YNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEME 142

Query: 47  RASLHPSERFEKTI----------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           R    P+ R   TI            A +VF EM  + I PD  S+ I++   ++A +  
Sbjct: 143 RLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLN 202

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      M + GI P+  TY+ V+  +C    +++A EL   M   G  PS  T+N   
Sbjct: 203 EAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILI 262

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +  R   + A +L ++M +DG  VP++ +Y+ LI    ++ R+D  R +  D+     
Sbjct: 263 DAHCKRGKLDEAFRLLKRMTDDGH-VPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQC 321

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P + +   LIHGLC+  + KEA +    M+  G  P  VT+ TL  G  ++      R 
Sbjct: 322 KPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARE 381

Query: 277 L 277
           L
Sbjct: 382 L 382



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 132/271 (48%), Gaps = 17/271 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI G C I R+D A   L +M++R  +P VVT N L++G+C+             I+
Sbjct: 293 YSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGR----------IK 342

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V D M   G  PDV +++ ++H + RA Q + + + L+ M  +G+ P V TY+++V
Sbjct: 343 EAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALV 402

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R+ +A  +  +M  +G  P+  TY      +      +G +KL+ +M   G+ 
Sbjct: 403 SGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGIS 462

Query: 182 VPNMHSYNILIGMFMALNR----MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            P+   Y  L        R    ++++RE    ++    G ++  Y   + GL E  K +
Sbjct: 463 -PDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEV--YRFAVDGLLEAGKME 519

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            A  +  +M+  G LP      +L  GL +S
Sbjct: 520 MALGFVRDMVRGGQLPAPERCASLVAGLCKS 550



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 132/284 (46%), Gaps = 11/284 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G  K  +++ A     +++  GV P+ V Y  L++G+C             +  
Sbjct: 13  YGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLC----------MANSFD 62

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F +M  RG  P   ++++++    +    + + D +  M E G  P V TY++V+
Sbjct: 63  DARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVM 122

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R+E+A  L  EM R G  P+  ++N        +   + A +++ +M+   + 
Sbjct: 123 DGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDI- 181

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  SY ILI       +++   +++  +  SG+ P   +Y ++IHG+C      EA +
Sbjct: 182 PPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALE 241

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
            F  M  KG  P + TF  L     +   L    RL K++ ++ 
Sbjct: 242 LFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDG 285



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 109/218 (50%), Gaps = 1/218 (0%)

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           M  R + PD  S+ I++   ++A +   + +    +   G+ P+   Y+S++  LC    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
            +DA EL  +M R G  PS  TYN        R     A  L ++M EDG  VP++ +YN
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGH-VPDVVTYN 119

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            ++      +R++    ++N+++  G  P+  S+  +I GLC++ K  +ACQ F EM  K
Sbjct: 120 TVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAK 179

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            + P   ++  L  GL ++  L    +L +++ +  IT
Sbjct: 180 DIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGIT 217


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 144/287 (50%), Gaps = 11/287 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTS+I   C+   +  A     EM ++G+ P+  TY  L++GVC+   +          
Sbjct: 336 VYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEA-------- 387

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+ + +EM+ +GI+ +   F+ ++  Y  +     +L     M++KG+   V  Y+S+
Sbjct: 388 --AQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSI 445

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              LC   R ++A+ LL  MV  GV P+  ++      Y    +   A +++R+M+E G 
Sbjct: 446 ASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKG- 504

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VPN+ +YN+LI  +     M    ++ ++++  GL PD+ + T LIHG C   K   A 
Sbjct: 505 NVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMAL 564

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           + F EM ++GL+P  VT+  +  GL +        +L  ++ E  +T
Sbjct: 565 KLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLT 611



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 148/310 (47%), Gaps = 28/310 (9%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL------------ 50
           T ++ G CK   ++M  + + E+  +GV+ NVVTYN  + G  +R  L            
Sbjct: 233 TIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEK 292

Query: 51  --------------HPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                         H      K I  A+++F+EMR +GIE DV  ++ ++    R+   +
Sbjct: 293 EGVACNVVTYTLLIHGFSNIGK-IEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVK 351

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   + M +KG+ P+  TY +++  +C  G++E A+ L+ EM   G+  +   +N   
Sbjct: 352 RALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLI 411

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y      + A++L   M++ GL   ++ +YN +      LNR D  + +   +   G+
Sbjct: 412 DGYCESGMVDEALRLQVVMEKKGL-ESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGV 470

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  S+T LI   C++  + EA + F EM EKG +P  +T+  L  G  +   ++   +
Sbjct: 471 SPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHK 530

Query: 277 LKKKLDEESI 286
           LK +L+   +
Sbjct: 531 LKDELENRGL 540



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 135/268 (50%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G CK  +++ A+  + EM  +G++ N V +N L++G C    +  + R +    
Sbjct: 372 YGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVV-- 429

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                   M  +G+E DV +++ +     + ++   +   L  M E+G+ P   ++++++
Sbjct: 430 --------MEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLI 481

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G   +A+ +  EM   G  P+  TYN     Y  R +   A KL  +++  GL 
Sbjct: 482 DIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGL- 540

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++++   LI       ++DM  ++++++   GL P++ +YT +I GL +  + +EA +
Sbjct: 541 IPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFK 600

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            + EM E GL P    + +L   L  +D
Sbjct: 601 LYDEMKETGLTPDDTVYSSLVGSLHSAD 628



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 117/252 (46%), Gaps = 11/252 (4%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           ++D   RF   M+   VE  V +  ++L+G+C+R            +    K+ DE+  +
Sbjct: 209 QVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGD----------VEMGRKLMDEVAAK 258

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           G++ +V +++  +  Y +        + L  M+++G+   V TY+ ++    + G+IE+A
Sbjct: 259 GVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEA 318

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
           + L  EM   G+      Y           +   A+ L+ +M + GL +P+ H+Y  LI 
Sbjct: 319 QRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGL-IPSAHTYGALIH 377

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
                 +M+  + + N+++G G+  +   +  LI G CE     EA +  V M +KGL  
Sbjct: 378 GVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLES 437

Query: 254 QKVTFETLYRGL 265
               + ++  GL
Sbjct: 438 DVFAYNSIASGL 449



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 108/243 (44%), Gaps = 6/243 (2%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           K    A + F+ M  +G   D  S  + L    R  Q    L     M    +  TV + 
Sbjct: 173 KMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSL 232

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + V+  LC  G +E   +L+ E+   GV  +  TYN F + Y  R D  G  ++   M++
Sbjct: 233 TIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEK 292

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
           +G+   N+ +Y +LI  F  + +++  + ++ +++  G+  D+  YT +I   C     K
Sbjct: 293 EGVAC-NVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVK 351

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEF 292
            A   F EM +KGL+P   T+  L  G+ ++  +   + L      K +D   + F +  
Sbjct: 352 RALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLI 411

Query: 293 QNY 295
             Y
Sbjct: 412 DGY 414


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 144/287 (50%), Gaps = 11/287 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTS+I   C+   +  A     EM ++G+ P+  TY  L++GVC+   +          
Sbjct: 332 VYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEA-------- 383

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+ + +EM+ +GI+ +   F+ ++  Y  +     +L     M++KG+   V  Y+S+
Sbjct: 384 --AQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSI 441

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              LC   R ++A+ LL  MV  GV P+  ++      Y    +   A +++R+M+E G 
Sbjct: 442 ASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKG- 500

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VPN+ +YN+LI  +     M    ++ ++++  GL PD+ + T LIHG C   K   A 
Sbjct: 501 NVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMAL 560

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           + F EM ++GL+P  VT+  +  GL +        +L  ++ E  +T
Sbjct: 561 KLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLT 607



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 148/310 (47%), Gaps = 28/310 (9%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL------------ 50
           T ++ G CK   ++M  + + E+  +GV+ NVVTYN  + G  +R  L            
Sbjct: 229 TIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEK 288

Query: 51  --------------HPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                         H      K I  A+++F+EMR +GIE DV  ++ ++    R+   +
Sbjct: 289 EGVACNVVTYTLLIHGFSNIGK-IEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVK 347

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   + M +KG+ P+  TY +++  +C  G++E A+ L+ EM   G+  +   +N   
Sbjct: 348 RALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLI 407

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y      + A++L   M++ GL   ++ +YN +      LNR D  + +   +   G+
Sbjct: 408 DGYCESGMVDEALRLQVVMEKKGL-ESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGV 466

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  S+T LI   C++  + EA + F EM EKG +P  +T+  L  G  +   ++   +
Sbjct: 467 SPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHK 526

Query: 277 LKKKLDEESI 286
           LK +L+   +
Sbjct: 527 LKDELENRGL 536



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 133/264 (50%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G CK  +++ A+  + EM  +G++ N V +N L++G C    +  + R +    
Sbjct: 368 YGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVV-- 425

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                   M  +G+E DV +++ +     + ++   +   L  M E+G+ P   ++++++
Sbjct: 426 --------MEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLI 477

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G   +A+ +  EM   G  P+  TYN     Y  R +   A KL  +++  GL 
Sbjct: 478 DIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGL- 536

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++++   LI       ++DM  ++++++   GL P++ +YT +I GL +  + +EA +
Sbjct: 537 IPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFK 596

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            + EM E GL P    + +L   L
Sbjct: 597 LYDEMKETGLTPDDTVYSSLVGSL 620



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 117/252 (46%), Gaps = 11/252 (4%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           ++D   RF   M+   VE  V +  ++L+G+C+R            +    K+ DE+  +
Sbjct: 205 QVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGD----------VEMGRKLMDEVAAK 254

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           G++ +V +++  +  Y +        + L  M+++G+   V TY+ ++    + G+IE+A
Sbjct: 255 GVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEA 314

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
           + L  EM   G+      Y           +   A+ L+ +M + GL +P+ H+Y  LI 
Sbjct: 315 QRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGL-IPSAHTYGALIH 373

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
                 +M+  + + N+++G G+  +   +  LI G CE     EA +  V M +KGL  
Sbjct: 374 GVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLES 433

Query: 254 QKVTFETLYRGL 265
               + ++  GL
Sbjct: 434 DVFAYNSIASGL 445



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 108/243 (44%), Gaps = 6/243 (2%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           K    A + F+ M  +G   D  S  + L    R  Q    L     M    +  TV + 
Sbjct: 169 KMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSL 228

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + V+  LC  G +E   +L+ E+   GV  +  TYN F + Y  R D  G  ++   M++
Sbjct: 229 TIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEK 288

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
           +G+   N+ +Y +LI  F  + +++  + ++ +++  G+  D+  YT +I   C     K
Sbjct: 289 EGVAC-NVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVK 347

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEF 292
            A   F EM +KGL+P   T+  L  G+ ++  +   + L      K +D   + F +  
Sbjct: 348 RALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLI 407

Query: 293 QNY 295
             Y
Sbjct: 408 DGY 410


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 139/277 (50%), Gaps = 14/277 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+ K   +D A     EM++RG+ PNVVTY+ ++  +C+           + + 
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCK----------AQAMD 251

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V   M   G+ P+  +++ ++H Y  + QP+ ++  L  M   G+ P V TY+S++
Sbjct: 252 KAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLM 311

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A ++   M + G+ P   TY    + Y  +        L   M  +G+ 
Sbjct: 312 DYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI- 370

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN + ++ILI  +    ++D    +++ ++  GL PD  +Y  +I  LC+  + ++A +
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
           YF +MI++ L P  + + +L   L   D    W + K
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSLCIFD---KWDKAK 464



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 138/297 (46%), Gaps = 19/297 (6%)

Query: 2   YTSLIYGWCKINRI-DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +T L+ G C   R  D  +  L  M + G  PNV +YN+LL G+C           E   
Sbjct: 129 FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCD----------ENRS 178

Query: 61  RNAEKVFDEMRVRGIE--PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           + A ++   M   G +  PDV S++ V++ + +      +    + M ++GI P V TYS
Sbjct: 179 QEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYS 238

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           S++  LC    ++ A E+L  MV+NGV P+  TYN     Y        A+   ++M  D
Sbjct: 239 SIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSD 298

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P++ +YN L+       R    R++++ +   GL P++ +Y  L+ G   K    E
Sbjct: 299 GV-EPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357

Query: 239 ACQYFVEMIEKGLLPQKVTFETLY-----RGLIQSDMLRTWRRLKKKLDEESITFGS 290
                  M+  G+ P    F  L      +G +   ML   +  ++ L+ +++T+G+
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGT 414



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 119/244 (48%), Gaps = 11/244 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I   CK   +D A   L  M++ GV PN  TYN +++G C  +S  P E       
Sbjct: 237 YSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYC--SSGQPKE------- 287

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A     +M   G+EPDV +++ ++    +  +   +    + M ++G+ P + TY +++
Sbjct: 288 -AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +   + G + +   LL  MVRNG+ P+   ++     Y  +   + AM ++ +M++ GL 
Sbjct: 347 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL- 405

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y  +IG+     R++     +  +    L P    Y  LIH LC   KW +A  
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKD 465

Query: 242 YFVE 245
           YF++
Sbjct: 466 YFLK 469



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 125/281 (44%), Gaps = 27/281 (9%)

Query: 30  VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89
           V PN+ TY +L+   C    L   +     + N  K       +G   D  +F+ +L   
Sbjct: 87  VTPNLCTYGILIGSCCCAGRL---DLGFAALGNVIK-------KGFRVDAIAFTPLLKGL 136

Query: 90  SRAHQPQLSLD-KLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV-CP 147
               +   ++D  L  M + G  P V +Y+ ++K LC   R ++A ELL  M  +G  CP
Sbjct: 137 CADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCP 196

Query: 148 S-----AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202
                     N FFKE     D + A   Y +M + G+ +PN+ +Y+ +I        MD
Sbjct: 197 PDVVSYTTVINGFFKE----GDLDKAYGTYHEMLDRGI-LPNVVTYSSIIAALCKAQAMD 251

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
              E+   +  +G+ P+  +Y  ++HG C   + KEA  +  +M   G+ P  VT+ +L 
Sbjct: 252 KAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLM 311

Query: 263 RGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNYHFK 298
             L ++      R++     K+ L  E  T+G+  Q Y  K
Sbjct: 312 DYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 108/218 (49%), Gaps = 12/218 (5%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG---ICPTVATYS 118
           +A  VFDE+  RG    +   +  L   +R H P  ++ + N M   G   + P + TY 
Sbjct: 37  DARHVFDELLRRGRGASIYGLNCALADVAR-HSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL-YRQMKE 177
            ++   C  GR++     LG +++ G    A  +    K     K  + AM +  R+M +
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 178 DGLCVPNMHSYNILIGMFMALNR----MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
            G C+PN+ SYNIL+      NR    +++++ + +D  G    PD+ SYT +I+G  ++
Sbjct: 156 LG-CIPNVFSYNILLKGLCDENRSQEALELLQMMPDD--GGDCPPDVVSYTTVINGFFKE 212

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
               +A   + EM+++G+LP  VT+ ++   L ++  +
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAM 250


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 151/319 (47%), Gaps = 31/319 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           Y ++I G+CK +R+D A + L  M +RG EP+VVTYN+L+   C R  L  + R      
Sbjct: 149 YNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLL 208

Query: 56  --------------FEKTIRN-----AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                          E TI       A K+ DEM  RG+ PD  ++++V++   +     
Sbjct: 209 KDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLD 268

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + + L+ + + G    V+TY+ +++ L + G+ E  E+L+ +M+  G  P+  TY+   
Sbjct: 269 RAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLI 328

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A  + + MKE  L  P+ +SY+ LI       ++D+  E  +D+   G 
Sbjct: 329 TALCRDGKIDEAKNVLKVMKEKAL-APDGYSYDPLISALCREGKVDLAIEFLDDMISGGH 387

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS-DMLRT-- 273
            PD+ SY  ++  LC+     EA   F ++ E G  P   ++ TL+  L  S D +R   
Sbjct: 388 LPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALG 447

Query: 274 --WRRLKKKLDEESITFGS 290
                L   +D + IT+ S
Sbjct: 448 MILEMLSNGIDPDEITYNS 466



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 134/294 (45%), Gaps = 35/294 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI        ID A + L EM+ RG+ P+  TYNV++NG+C+   L  +  F   I 
Sbjct: 219 YTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRIS 278

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                      EK+  +M V+G EP+  ++S ++    R  +  
Sbjct: 279 KNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKID 338

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + + L  MKEK + P   +Y  ++  LC  G+++ A E L +M+  G  P   +YN   
Sbjct: 339 EAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSIL 398

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA----LNRMDMVREIWNDVK 212
                  +A+ A+ ++ ++ E G C PN  SYN L G   +    +  + M+ E+ ++  
Sbjct: 399 ASLCKNGNADEALNIFEKLGEVG-CPPNAGSYNTLFGALWSSGDKIRALGMILEMLSN-- 455

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE-KGLLPQKVTFETLYRGL 265
             G+ PD  +Y  LI  LC      +A +  V+M E +   P  +++ T+  GL
Sbjct: 456 --GIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGL 507



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 136/263 (51%), Gaps = 12/263 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T LI G+  + +I+ A + + E++E+  +P+V  YN +++G C+      ++R    + +
Sbjct: 116 TKLIKGFFNMKKIEKAIQVM-EILEKHGKPDVFAYNAVISGFCK------ADR----VDH 164

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A KV D M+ RG EPDV +++I++  +    +  L+L  ++ + +    PTV TY+ +++
Sbjct: 165 ASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIE 224

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
              + G I++A +LL EM+  G+ P   TYN            + A +   ++ ++G CV
Sbjct: 225 ATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNG-CV 283

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
             + +YNIL+   +   + +   ++ +D+   G  P+  +Y+ LI  LC   K  EA   
Sbjct: 284 AGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNV 343

Query: 243 FVEMIEKGLLPQKVTFETLYRGL 265
              M EK L P   +++ L   L
Sbjct: 344 LKVMKEKALAPDGYSYDPLISAL 366



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 28/183 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEK-- 58
           Y  LI   C+  ++D+A  FL +MI  G  P++++YN +L  +C+  +   +   FEK  
Sbjct: 359 YDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLG 418

Query: 59  -----------------------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                   IR    +  EM   GI+PD  +++ ++    R    
Sbjct: 419 EVGCPPNAGSYNTLFGALWSSGDKIRALGMIL-EMLSNGIDPDEITYNSLISCLCRDGLV 477

Query: 96  QLSLDKLNFMKEKGIC-PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
             +++ L  M E   C PTV +Y++V+  LC   RI DA E+L  MV  G  P+  TY  
Sbjct: 478 DQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTL 537

Query: 155 FFK 157
             +
Sbjct: 538 LIQ 540



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 63/142 (44%), Gaps = 2/142 (1%)

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C   + +++   L  MV  G  P         K +   K    A+++   +++ G   P+
Sbjct: 88  CKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEKHG--KPD 145

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +YN +I  F   +R+D   ++ + +K  G  PD+ +Y +LI   C + +   A +   
Sbjct: 146 VFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMD 205

Query: 245 EMIEKGLLPQKVTFETLYRGLI 266
           ++++    P  +T+  L    I
Sbjct: 206 QLLKDNCKPTVITYTILIEATI 227



 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV 44
           Y +++ G CK+ RI  A   L  M+  G  PN  TY +L+ G+
Sbjct: 500 YNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQGI 542


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 139/295 (47%), Gaps = 26/295 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA-SLHPSERFEKT- 59
           Y +L+ G CK+ R++ A   L ++++ G  P+VVTY  L++G+ ++  S    + F++  
Sbjct: 72  YNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMA 131

Query: 60  -----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  I  A  V+  M  +G  PDV + S ++    +A +  
Sbjct: 132 SRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIG 191

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++     M+ +G+ P    YS+++  LC   +++ A E+L +M +    P   TYN   
Sbjct: 192 AAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 251

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                  D   A   + +M E G C P++++YNILI  F      D    +++D+  S  
Sbjct: 252 DGLCKSGDVAAARAFFDEMLEAG-CKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRC 310

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
            P++ +Y  LI GLC++++  +A  Y+  M E+G  P    + +L  GL +S  L
Sbjct: 311 SPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKL 365



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 110/250 (44%), Gaps = 11/250 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G  +  +I  A      M  +G  P+VVT + +++G+C+   +  + R      
Sbjct: 142 YTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVR------ 195

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F  M  RG+ P+   +S ++H   +A +   +L+ L  MK+    P   TY+ ++
Sbjct: 196 ----IFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 251

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +  A     EM+  G  P   TYN     +    + + A  ++  M     C
Sbjct: 252 DGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSS-RC 310

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  LI       ++      +  +K  G  PD   Y+ L+ GLC+  K +  C 
Sbjct: 311 SPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCM 370

Query: 242 YFVEMIEKGL 251
            F EM   G+
Sbjct: 371 LFDEMERSGV 380



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 112/233 (48%), Gaps = 11/233 (4%)

Query: 36  TYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           T+++L+NG+ +   L            A  +  E    G   D+ +++ ++   ++  + 
Sbjct: 1   TFSILINGLVKAGMLI----------QAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKI 50

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           Q ++  +  +   G  PT+ATY++++  LC  GR+E+A +LL ++V NG  P   TY   
Sbjct: 51  QEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSL 110

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                 +K +  A KL+++M   GL +  +  Y  LI   +   ++     ++  +   G
Sbjct: 111 IDGLGKKKRSFEAYKLFKEMASRGLALDTV-CYTALIRGLLQAGKIPQASSVYKTMTSQG 169

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             PD+ + + +I GLC+  +   A + F  M  +GL P +V +  L  GL ++
Sbjct: 170 CVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKA 222



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 13/246 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y++LI+G CK  ++D A   L +M +    P+ +TYN+L++G+C+   +  +  F    
Sbjct: 211 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAF---- 266

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                 FDEM   G +PDV +++I++  + +A     +    + M      P V TY ++
Sbjct: 267 ------FDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTL 320

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   ++  A      M   G  P +  Y+             G   L+ +M+  G 
Sbjct: 321 ISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSG- 379

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            V N  +   LI      NR+D    ++N ++  G+ P   +Y  +I  L +  K  E  
Sbjct: 380 -VANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQ 437

Query: 241 QYFVEM 246
             + EM
Sbjct: 438 AVYQEM 443


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 132/267 (49%), Gaps = 16/267 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI G C   ++  A RF  EM+ R + P +VTYN+L+NG+C++            +
Sbjct: 534 IYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGK----------V 583

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE +  E+  +G+  DV +++ ++  YS A   Q +L+    MK+ GI PT+ TY  +
Sbjct: 584 MEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRL 643

Query: 121 VKCLCSCGR--IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +     CG+  +   E++  EM++  + P    YN     Y    D   A  L+  M+  
Sbjct: 644 I---AGCGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQ 700

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P+  +YN LI       RM  V+ + ND+K  GL P  ++Y +LI G C+ + +  
Sbjct: 701 GI-QPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDG 759

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGL 265
           A  ++ EM E G  P     + L  GL
Sbjct: 760 AYVWYREMFENGFTPSVSICDNLITGL 786



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 134/287 (46%), Gaps = 11/287 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L  G  K   +D +     E + +GV+    T ++LLN +C+          E  + 
Sbjct: 325 YTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCK----------EGNME 374

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+V  +    G+ P    F+ +++ Y +      +   +  M+  G+ P   TY+S+V
Sbjct: 375 KAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLV 434

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C    +E+AE+ + +MV  GV P+ ETYN     Y      +   ++  +M++ GL 
Sbjct: 435 KKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGL- 493

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ SY  LI        +     I  D+   G+ P+   Y MLI G C   K K+A +
Sbjct: 494 KPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFR 553

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
           +F EM+ + ++P  VT+  L  GL +   +     L  ++  + ++F
Sbjct: 554 FFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSF 600



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 125/263 (47%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +++ G+C++  I+ A   + +M   G+ PN VTYN L+   C            K + 
Sbjct: 395 FNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEM----------KNME 444

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK   +M  +G+ P+V +++ ++  Y R+         L  M++KG+ P V +Y  ++
Sbjct: 445 EAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLI 504

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLC    I +AE +LG+MV  GV P+A+ YN              A + + +M    + 
Sbjct: 505 NCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREI- 563

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP + +YNILI       ++     + +++   GL  D+ +Y  LI G       ++A +
Sbjct: 564 VPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALE 623

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            +  M + G+ P   T+  L  G
Sbjct: 624 LYETMKKSGIKPTLNTYHRLIAG 646



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 137/302 (45%), Gaps = 11/302 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY   I    K+  +  A   +  M   GV P V  YNV++ G+C+          EK +
Sbjct: 184 MYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCK----------EKRM 233

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           ++AEK+FDEM  R + P+  +++ ++  Y +  Q + + +    MK + + PT+ T++S+
Sbjct: 234 KDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSL 293

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC    +E+A+ +L EM   G  P   TY   F  +    + + ++ L  +    G+
Sbjct: 294 LNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGV 353

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            + + ++ +IL+        M+   E+      +GL P    +  +++G C+     +A 
Sbjct: 354 QILD-YTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAY 412

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
               +M   GL P  VT+ +L +   +   +    +  KK+ E+ +    E  N     Y
Sbjct: 413 TTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGY 472

Query: 301 RR 302
            R
Sbjct: 473 GR 474



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 139/317 (43%), Gaps = 50/317 (15%)

Query: 1   MYTSLIYGWCKINRI--DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK 58
           +++ ++   C  +++  + AE ++  M + GV P+V + N+ L       SL  ++R+E 
Sbjct: 113 LFSDMLLSICSESKMVSESAELYM-LMKKDGVLPSVASLNLFLE------SLVSTKRYED 165

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           T++    +F E+   G+ PD   +   +    +    + +++ +  MK  G+ P V  Y+
Sbjct: 166 TLQ----LFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYN 221

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            V+  LC   R++DAE+L  EM+   V P+  TYN     Y        A  +  +MK +
Sbjct: 222 VVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVE 281

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT-------------- 224
            +  P + ++N L+        M+  + +  +++  G  PD  +YT              
Sbjct: 282 NV-EPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDA 340

Query: 225 ---------------------MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
                                +L++ LC++   ++A +   + +E GL P  V F T+  
Sbjct: 341 SITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVN 400

Query: 264 GLIQ-SDMLRTWRRLKK 279
           G  Q  D+ + +  ++K
Sbjct: 401 GYCQVGDINKAYTTIEK 417



 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 66/144 (45%), Gaps = 10/144 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI+ + +   +  A      M  +G++P+ +TYN L+ G  +   +H         
Sbjct: 673 IYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMH--------- 723

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              + + ++M++RG+ P   ++ I++  + +      +      M E G  P+V+   ++
Sbjct: 724 -KVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTPSVSICDNL 782

Query: 121 VKCLCSCGRIEDAEELLGEMVRNG 144
           +  L   GR  DA+ +  EM   G
Sbjct: 783 ITGLREEGRSHDADVICSEMNMKG 806


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 146/295 (49%), Gaps = 16/295 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++I+  CK   +  A     EMI +G+ PNVVTYN L+ G C    L          
Sbjct: 205 MYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHL---------- 254

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  + +EM+++ I PDV +F+ ++    +  + + +   L  M +  I P V TY+S+
Sbjct: 255 KEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSL 314

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +       ++++A+ +   M ++GV P+  TY          K  + AM L+ +MK   +
Sbjct: 315 IDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNM 374

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +P++ +Y  LI      + ++    +   +K  G+ PD+ SYT+L+  LC+  + + A 
Sbjct: 375 -IPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAK 433

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD-----EESITFGS 290
           ++F  ++ KG      T+  +  GL ++D+      LK K++      ++ITF +
Sbjct: 434 EFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKT 488



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 140/303 (46%), Gaps = 26/303 (8%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI-------- 60
           +C +  I  A   L  +++RG  PN +T N L+ G+C R  +  +  F   +        
Sbjct: 108 FCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLN 167

Query: 61  -----------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN 103
                            +   ++  ++    ++PDV  ++ ++H   +      + D  +
Sbjct: 168 QVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYS 227

Query: 104 FMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163
            M  KGI P V TY+++V   C  G +++A  LL EM    + P   T+N    +  G++
Sbjct: 228 EMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLI-DALGKE 286

Query: 164 DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSY 223
               A K+   +       P++ +YN LI  +  LN++   + ++  +  SG+ P++ +Y
Sbjct: 287 GKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTY 346

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           T +I GLC+++   EA   F EM  K ++P  VT+ +L  GL ++  L     L KK+ E
Sbjct: 347 TTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKE 406

Query: 284 ESI 286
           + I
Sbjct: 407 QGI 409



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 153/342 (44%), Gaps = 67/342 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G+  +N++  A+     M + GV PNV TY  +++G+C+          EK + 
Sbjct: 311 YNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCK----------EKMVD 360

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F+EM+ + + PD+ +++ ++    + H  + ++     MKE+GI P V +Y+ ++
Sbjct: 361 EAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILL 420

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK------------EYRGRKDANGAM 169
             LC  GR+E+A+E    ++  G   + +TYN                + + + +  G M
Sbjct: 421 DALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCM 480

Query: 170 -----------------------KLYRQMKEDGL---------------------CV-PN 184
                                  K+ R+M   GL                     C+ P+
Sbjct: 481 PDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPD 540

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y  L+  +  +N +   + ++  +   G+ P++  YT++I GLC+K+   EA   F 
Sbjct: 541 VVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFE 600

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           EM  K + P  VT+ +L   L ++  L     L K++ E  I
Sbjct: 601 EMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGI 642



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 134/280 (47%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK        R L ++    V+P+VV YN +++ +C+           K + 
Sbjct: 171 YRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKN----------KLLG 220

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  ++ EM V+GI P+V +++ +++ +      + +   LN MK K I P V T+++++
Sbjct: 221 DACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLI 280

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G+++ A+ +L  M++  + P   TYN     Y        A  ++  M + G+ 
Sbjct: 281 DALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGV- 339

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  +I        +D    ++ ++K   + PD+ +YT LI GLC+    + A  
Sbjct: 340 TPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIA 399

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
              +M E+G+ P   ++  L   L +   L   +   ++L
Sbjct: 400 LCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRL 439



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 137/316 (43%), Gaps = 49/316 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           YT L+   CK  R++ A+ F   ++ +G   NV TYNV++NG+C+               
Sbjct: 416 YTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKME 475

Query: 47  -RASLHPSERFEKTI---------RNAEKVFDEMRVRG---------------------- 74
            +  +  +  F+  I           AEK+  EM  RG                      
Sbjct: 476 GKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKA 535

Query: 75  -IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
            I+PDV ++  ++  Y   ++ + +      M + G+ P V  Y+ ++  LC    +++A
Sbjct: 536 CIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEA 595

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             L  EM    + P+  TY               A+ L ++MKE G+  P+++SY IL+ 
Sbjct: 596 MSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGI-QPDVYSYTILLD 654

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
                 R++  +EI+  +   G   ++  YT +I+ LC+   + EA     +M +KG +P
Sbjct: 655 GLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMP 714

Query: 254 QKVTFETLYRGLIQSD 269
             VTF+ +   L + D
Sbjct: 715 DAVTFDIIIWALFEKD 730



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 137/303 (45%), Gaps = 34/303 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI G CK + ++ A     +M E+G++P+V +Y +LL+ +C+   L           
Sbjct: 381 YTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRL----------E 430

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA++ F  + V+G   +V +++++++   +A     ++D  + M+ KG  P   T+ +++
Sbjct: 431 NAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTII 490

Query: 122 KCLCSCGRIEDAEELLGEMVRNG-----------------------VCPSAETYNCFFKE 158
             L      + AE++L EM+  G                       + P   TY      
Sbjct: 491 CALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDG 550

Query: 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218
           Y    +   A  ++  M + G+  PN+  Y I+I        +D    ++ ++K   + P
Sbjct: 551 YFLVNELKHAKYVFYSMAQMGV-TPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFP 609

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
           ++ +YT LI  LC+    + A     EM E G+ P   ++  L  GL +S  L   + + 
Sbjct: 610 NIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIF 669

Query: 279 KKL 281
           ++L
Sbjct: 670 QRL 672



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 110/215 (51%), Gaps = 11/215 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G+  +N +  A+     M + GV PNV  Y ++++G+C++          KT+ 
Sbjct: 544 YGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKK----------KTVD 593

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F+EM+ + + P++ +++ ++    + H  + ++  L  MKE GI P V +Y+ ++
Sbjct: 594 EAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILL 653

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+E A+E+   ++  G   + + Y     E       + A+ L  +M++ G C
Sbjct: 654 DGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKG-C 712

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           +P+  +++I+I      +  D   +I  ++   GL
Sbjct: 713 MPDAVTFDIIIWALFEKDENDKAEKILXEMIARGL 747



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 86/200 (43%), Gaps = 3/200 (1%)

Query: 67  FDEMRVRGIEPDVTSFSIVLH-VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           FD M +    P    F+ +L  + +  H P + +      +  G  P + T + ++ C C
Sbjct: 51  FDRMLLMRPPPPTFHFNYILSSLVNNKHYPTV-ISLFKKFESNGATPDLCTLNILMNCFC 109

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
               I  A  +L  +++ G  P+A T N   K    R +   A+  + Q+   G  + N 
Sbjct: 110 HLTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQL-NQ 168

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
            SY  LI           V  +   ++G  + PD+  Y  +IH LC+ +   +AC  + E
Sbjct: 169 VSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSE 228

Query: 246 MIEKGLLPQKVTFETLYRGL 265
           MI KG+ P  VT+  L  G 
Sbjct: 229 MIVKGISPNVVTYNALVYGF 248


>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
          Length = 676

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 136/277 (49%), Gaps = 12/277 (4%)

Query: 2   YTSLIYGWCKINRIDMAER-FLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +TSLI G CKI  ++ A R FL  +     +PNV TY V++ G C+          E  +
Sbjct: 289 HTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCK----------EGKL 338

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE +   M  +G+ P+  +++ ++H + +      + + +N MK +G  P + TY+++
Sbjct: 339 ARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAI 398

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G+I++A ++L      G+     TY     E+  +     A+ L++QM E   
Sbjct: 399 IGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKS- 457

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P++H+Y  +I M+    +M+  +++++     GL P   +YT +I G C   K   A 
Sbjct: 458 CHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSAL 517

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           + F  M++ G LP  +T+  L   L +   L   R L
Sbjct: 518 KVFERMVQHGCLPDSITYGALISSLCKESRLEEARAL 554



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 119/260 (45%), Gaps = 12/260 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T ++  +C+  R          M E G  PN+V Y+  ++G+C R            ++ 
Sbjct: 220 TVVVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGY----------VKQ 269

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK-LNFMKEKGICPTVATYSSVV 121
           A  V +EM  +G++P+V + + ++    +    + +    L  +K     P V TY+ ++
Sbjct: 270 AFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMI 329

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++  AE LLG MV  G+ P+  TY      +      + A +L  +MK +G  
Sbjct: 330 GGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGF- 388

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+++YN +IG F    ++    ++       GL  D  +YT+LI   C++     A  
Sbjct: 389 LPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALD 448

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F +M EK   P   T+ T+
Sbjct: 449 LFKQMAEKSCHPDIHTYTTI 468



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 108/239 (45%), Gaps = 10/239 (4%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           GV P+  ++  L+ G CR        RFE+    A+ +   M  +G   D  + ++V+  
Sbjct: 176 GVRPDHRSFRALVLGCCREG------RFEE----ADALLAAMWAQGFCLDSATCTVVVRA 225

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           + R  + +   D    M E G  P +  YS+ +  LC  G ++ A  +L EMV  G+ P+
Sbjct: 226 FCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPN 285

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             T+               A +L+ ++ +     PN+H+Y ++IG +    ++     + 
Sbjct: 286 VYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLL 345

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
             +   GL P+ ++YT LIHG C+   +  A +   +M  +G LP   T+  +  G  +
Sbjct: 346 GRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCK 404



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 87/207 (42%), Gaps = 26/207 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           YT+LI+G CK    D A   + +M   G  PN+ TYN ++ G C++  +  + +      
Sbjct: 360 YTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMAT 419

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +  I  A  +F +M  +   PD+ +++ ++ +Y +  Q +
Sbjct: 420 SQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQME 479

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            S    +     G+ PT  TY+S++   C  G++  A ++   MV++G  P + TY    
Sbjct: 480 QSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALI 539

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVP 183
                      A  L+  M +  L VP
Sbjct: 540 SSLCKESRLEEARALFETMLDKHL-VP 565



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 89/231 (38%), Gaps = 43/231 (18%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR-----AHQPQLSLDKLNFMKEKGICPTV 114
           +R A  +  E+R  G+   V + + VL V  R     AH  + + D +      G+ P  
Sbjct: 124 LREAADMLLELRSHGLPLVVETANWVLRVGLRHPGCFAHARE-AFDGMA-RAAGGVRPDH 181

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            ++ ++V   C  GR E+A+ LL  M   G C  + T     + +  +        L+R+
Sbjct: 182 RSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTDLFRR 241

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M E                                     G  P++ +Y+  I GLCE+ 
Sbjct: 242 MSE------------------------------------MGTPPNMVNYSAWIDGLCERG 265

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
             K+A     EM+ KGL P   T  +L  GL +   +    RL  KL + S
Sbjct: 266 YVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSS 316


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 131/263 (49%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I+G+     I+ A R L  M  +G+EP+  TY  L++G+C+          E  + 
Sbjct: 265 YNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCK----------EGRLE 314

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +FD+M   G+ P+  +++ ++  Y      + +    + M +KGI P+V+TY+ +V
Sbjct: 315 EASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLV 374

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+ +A++++ EM + G+ P A TYN     Y    +A  A  L+ +M   G+ 
Sbjct: 375 HALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGI- 433

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P   +Y  LI +    NRM    +++  +   G+ PD+  +  ++ G C     + A  
Sbjct: 434 EPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFM 493

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
              EM  K + P +VTF TL +G
Sbjct: 494 LLKEMDRKSVPPDEVTFNTLMQG 516



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 142/279 (50%), Gaps = 11/279 (3%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           + K+NR++MA     EM    +   V T+N+++N +C+          E  ++ A +   
Sbjct: 202 FLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCK----------EGKLKKAREFIG 251

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
            M   G +P+V S++ ++H YS     + +   L+ M+ KGI P   TY S++  +C  G
Sbjct: 252 FMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEG 311

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           R+E+A  L  +MV  G+ P+A TYN     Y  + D   A     +M + G+ +P++ +Y
Sbjct: 312 RLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGI-MPSVSTY 370

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N+L+       RM    ++  +++  G+ PD  +Y +LI+G       K+A     EM+ 
Sbjct: 371 NLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLS 430

Query: 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           KG+ P  VT+ +L   L + + ++    L +K+ ++ ++
Sbjct: 431 KGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS 469



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 140/285 (49%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  ++   CK  ++  A  F+G M   G +PNVV+YN +++G   R +          I 
Sbjct: 230 FNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGN----------IE 279

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D MRV+GIEPD  ++  ++    +  + + +    + M E G+ P   TY++++
Sbjct: 280 GARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLI 339

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C+ G +E A     EMV+ G+ PS  TYN              A  + ++M++ G+ 
Sbjct: 340 DGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGI- 398

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+  +YNILI  +          ++ N++   G+ P   +YT LI+ L  + + KEA  
Sbjct: 399 IPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADD 458

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F +++++G+ P  + F  +  G   +  +     L K++D +S+
Sbjct: 459 LFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSV 503



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 137/289 (47%), Gaps = 26/289 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH---------- 51
           Y SLI G CK  R++ A     +M+E G+ PN VTYN L++G C +  L           
Sbjct: 300 YGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMV 359

Query: 52  -----PSER----------FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                PS             E  +  A+ +  EMR +GI PD  +++I+++ YSR    +
Sbjct: 360 KKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAK 419

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + D  N M  KGI PT  TY+S++  L    R+++A++L  +++  GV P    +N   
Sbjct: 420 KAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMV 479

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +    +   A  L ++M    +  P+  ++N L+       +++  R + +++K  G+
Sbjct: 480 DGHCANGNVERAFMLLKEMDRKSV-PPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGI 538

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            PD  SY  LI G   +   K+A +   EM+  G  P  +T+  L + L
Sbjct: 539 KPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCL 587



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 10/152 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+ +++ G C    ++ A   L EM  + V P+ VT+N L+ G CR          E  +
Sbjct: 474 MFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCR----------EGKV 523

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + DEM+ RGI+PD  S++ ++  Y R    + +    + M   G  PT+ TY+++
Sbjct: 524 EEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNAL 583

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
           +KCLC     + AEELL EMV  G+ P   TY
Sbjct: 584 IKCLCKNQEGDLAEELLKEMVNKGISPDDSTY 615



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 114/240 (47%), Gaps = 10/240 (4%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A K F  M+ +GI P + + + +L ++ + ++ +++      M    I  TV T++ +V 
Sbjct: 176 AFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVN 235

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  G+++ A E +G M   G  P+  +YN     Y  R +  GA ++   M+  G+  
Sbjct: 236 VLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGI-E 294

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+ ++Y  LI       R++    +++ +   GL P+  +Y  LI G C K   + A  Y
Sbjct: 295 PDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSY 354

Query: 243 FVEMIEKGLLPQKVTFETLYRGLI-------QSDMLRTWRRLKKKLDEESITFGSEFQNY 295
             EM++KG++P   T+  L   L          DM++  R  KK +  ++IT+      Y
Sbjct: 355 RDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMR--KKGIIPDAITYNILINGY 412



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 96/191 (50%), Gaps = 11/191 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLIY   + NR+  A+    +++++GV P+V+ +N +++G C   +          + 
Sbjct: 440 YTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGN----------VE 489

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  EM  + + PD  +F+ ++    R  + + +   L+ MK +GI P   +Y++++
Sbjct: 490 RAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLI 549

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G I+DA  +  EM+  G  P+  TYN   K     ++ + A +L ++M   G+ 
Sbjct: 550 SGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGIS 609

Query: 182 VPNMHSYNILI 192
            P+  +Y  LI
Sbjct: 610 -PDDSTYLSLI 619


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 142/288 (49%), Gaps = 15/288 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G C  +++  A   +  M+E G +PNVVTYN ++NG+C+               
Sbjct: 138 FNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSL--------- 188

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +M  R ++ DV ++S ++    R      ++     M+ KGI  ++ TY+S+V
Sbjct: 189 -ALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLV 247

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+  D  +LL +M    + P+  T+N     +        A +LY++M   G+ 
Sbjct: 248 GGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGIS 307

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +YN L+  +   NR+     + + +  +   PD+ ++T LI G C+ ++  E  +
Sbjct: 308 -PNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMK 366

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
            F ++ ++GL+   VT+  L +G  QS  L     + ++L +E ++ G
Sbjct: 367 LFRKISKRGLVANTVTYSILVQGFCQSGKL----EIAEELFQEMVSLG 410



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 138/264 (52%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I   C+   ID A     EM  +G++ ++VTYN L+ G+C+    +          
Sbjct: 208 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWN---------- 257

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++  +M  R I P+V +F++++ V+ +  + Q + +    M  KGI P   TY+S++
Sbjct: 258 DGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLM 317

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R+ +A  +L  MVRN   P   T+    K Y   K  +  MKL+R++ + GL 
Sbjct: 318 DGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGL- 376

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V N  +Y+IL+  F    ++++  E++ ++   G+ PD+ +Y +L+ GLC+  K ++A +
Sbjct: 377 VANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALE 436

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F ++ +  +    V +  +  G+
Sbjct: 437 IFEDLQKSKMNLDIVMYTIIIEGM 460



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 143/296 (48%), Gaps = 16/296 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +I  +C+  +   A   LG++++ G EP+  T+N L+NG+C           E  +  A 
Sbjct: 106 MINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLC----------LESKVSEAV 155

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +   M   G +P+V +++ +++   ++    L+LD L  M E+ +   V TYS+++  L
Sbjct: 156 VLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSL 215

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G I+ A  L  EM   G+  S  TYN            N  ++L + M    + +PN
Sbjct: 216 CRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKI-IPN 274

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + ++N+LI +F+   ++    E++ ++   G+ P+  +Y  L+ G C + +  EA     
Sbjct: 275 VITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLD 334

Query: 245 EMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLKKK-LDEESITFGSEFQNY 295
            M+     P  VTF +L +G  +     + ++ +R++ K+ L   ++T+    Q +
Sbjct: 335 LMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGF 390



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 127/279 (45%), Gaps = 17/279 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI  + K  ++  A     EMI +G+ PN +TYN L++G C           +  + 
Sbjct: 278 FNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYC----------MQNRLS 327

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D M      PD+ +F+ ++  Y +  +    +     + ++G+     TYS +V
Sbjct: 328 EANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILV 387

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G++E AEEL  EMV  GV P   TY               A++++  +++  + 
Sbjct: 388 QGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMN 447

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWN---DVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           + ++  Y I+I     + +   V + WN    +   G+ P++ +YT++I GLC+K    E
Sbjct: 448 L-DIVMYTIIIE---GMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE 503

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A     +M E G  P   T+ TL R  ++   L    +L
Sbjct: 504 ANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKL 542



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 11/235 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSLI G+CK+ R+D   +   ++ +RG+  N VTY++L+ G C+   L           
Sbjct: 348 FTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEI--------- 398

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE++F EM   G+ PDV ++ I+L       + + +L+    +++  +   +  Y+ ++
Sbjct: 399 -AEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIII 457

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + +C  G++EDA  L   +   GV P+  TY         +   + A  L R+M+EDG  
Sbjct: 458 EGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG-N 516

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
            PN  +YN LI   +    +    ++  ++K  G   D  S  M+I  L     W
Sbjct: 517 EPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLSSAVWW 571



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 124/285 (43%), Gaps = 16/285 (5%)

Query: 16  DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI 75
           D A     EMI     P++V ++   +GV      +    F K          +M + GI
Sbjct: 47  DDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCK----------KMELNGI 96

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
             ++ + +I+++ + R  +   +   L  + + G  P   T+++++  LC   ++ +A  
Sbjct: 97  AHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVV 156

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           L+  MV NG  P+  TYN          D + A+ L R+M E  +   ++ +Y+ +I   
Sbjct: 157 LVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNV-KADVFTYSTIIDSL 215

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
                +D    ++ +++  G+   L +Y  L+ GLC+  KW +  Q   +M  + ++P  
Sbjct: 216 CRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNV 275

Query: 256 VTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           +TF  L    ++   L+    L      K +   +IT+ S    Y
Sbjct: 276 ITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGY 320



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 10/126 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT +I G CK  +++ A      +  +GV+PNV+TY V+++G+C++ SL          
Sbjct: 452 MYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLS--------- 502

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +  +M   G EP+  +++ ++  + R      S   +  MK  G     ++   V
Sbjct: 503 -EANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMV 561

Query: 121 VKCLCS 126
           +  L S
Sbjct: 562 IDMLSS 567


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 134/285 (47%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK   +  A   + EM  +G EPNV+TY +L++  C+          E  + 
Sbjct: 410 YNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCK----------EGRLE 459

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V DEM  +G+  +   ++ ++    +  + Q +L+    M  KG  P + T++S++
Sbjct: 460 EARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLI 519

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   + E+A  L  +M+  GV  +  TYN     +  R     A+KL   M   G C
Sbjct: 520 FGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRG-C 578

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  +YN LI        ++    ++ D+   GL P+  S  +LI+GLC     + A +
Sbjct: 579 PLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALE 638

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +  +MI +GL P  VT+ +L  GL ++   +    L  KL  E I
Sbjct: 639 FLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGI 683



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 132/266 (49%), Gaps = 16/266 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI+   K+ R++   + L EM+  G  P+V T+N  ++G+C+   +H         
Sbjct: 272 VYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIH--------- 322

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+ D M +RG  P+  ++ +++H   R  +    +D+   +  K   P V  ++++
Sbjct: 323 -EAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGK----VDEARMLLNKVPNPNVVLFNTL 377

Query: 121 VKCLCSCGRIEDAEELLGE-MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +    S GR+++A+ ++ E M+  G  P   TYN        +     A +L  +M+  G
Sbjct: 378 INGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKG 437

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C PN+ +Y ILI  F    R++  R + +++ G GL  +   Y  LI  LC+ +K ++A
Sbjct: 438 -CEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDA 496

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGL 265
              F +M  KG  P   TF +L  GL
Sbjct: 497 LNMFGDMSSKGCKPDIFTFNSLIFGL 522



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 124/266 (46%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI   CK  ++  A    G+M  +G +P++ T+N L+ G+C+        +FE+   
Sbjct: 480 YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK------VNKFEE--- 530

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++ +M + G+  +  +++ ++H + R    Q +L  +N M  +G      TY+ ++
Sbjct: 531 -ALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLI 589

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC  G IE    L  +M+  G+ P+  + N          +   A++  R M   GL 
Sbjct: 590 KALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGL- 648

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN LI       R      +++ ++  G+ PD  +Y  LI   C++  + +A  
Sbjct: 649 TPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHL 708

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
                ++ G +P +VT+  L    I+
Sbjct: 709 LLSRGVDSGFIPNEVTWYILVSNFIK 734



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 18/262 (6%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           C +N +D A   L +M   G  PN + Y  L++ + +             +    K+ +E
Sbjct: 246 CLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGR----------VNEVLKLLEE 295

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           M + G  PDV +F+  +H   +  +   +   ++ M  +G  P   TY  ++  LC  G+
Sbjct: 296 MLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGK 355

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDGLCVPNMHS 187
           +++A  LL ++      P+   +N     Y  RGR D   A+ ++  M   G C P++ +
Sbjct: 356 VDEARMLLNKVPN----PNVVLFNTLINGYVSRGRLDEAKAV-MHESMLSVG-CGPDIFT 409

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           YN LI        +   RE+ N+++  G  P++ +YT+LI   C++ + +EA     EM 
Sbjct: 410 YNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMS 469

Query: 248 EKGLLPQKVTFETLYRGLIQSD 269
            KGL    V +  L   L + +
Sbjct: 470 GKGLALNAVGYNCLISALCKDE 491



 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 114/263 (43%), Gaps = 19/263 (7%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           EM+ +G+ P V T+ V++  +C              + +A  +  +M   G  P+   + 
Sbjct: 225 EMLSKGISPTVYTFGVVMKALC----------LVNEVDSACALLKDMTRHGCVPNAIVYQ 274

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            ++H  S+  +    L  L  M   G  P V T++  +  LC   RI +A +L+  M+  
Sbjct: 275 TLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLR 334

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G  P++ TY             + A  L  ++       PN+  +N LI  +++  R+D 
Sbjct: 335 GFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN-----PNVVLFNTLINGYVSRGRLDE 389

Query: 204 VREIWNDVKGS-GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
            + + ++   S G GPD+ +Y  LI GLC+K     A +   EM  KG  P  +T+  L 
Sbjct: 390 AKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILI 449

Query: 263 RGLIQSDMLRTWRRLKKKLDEES 285
               +   L   R +   LDE S
Sbjct: 450 DRFCKEGRLEEARNV---LDEMS 469



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 6/206 (2%)

Query: 63  AEKVFDEMR-VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           A ++  +MR V   EP   S+++VL V    + P++  +    M  KGI PTV T+  V+
Sbjct: 183 ATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVM 242

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC    ++ A  LL +M R+G  P+A  Y             N  +KL  +M   G C
Sbjct: 243 KALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMG-C 301

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+++++N  I     + R+    ++ + +   G  P+  +Y +L+HGLC   K  EA  
Sbjct: 302 IPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARM 361

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
               ++ K   P  V F TL  G + 
Sbjct: 362 ----LLNKVPNPNVVLFNTLINGYVS 383



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 2/160 (1%)

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
           +KG C     Y  ++  L + G  +  + LL +M + G+      +    K Y GR    
Sbjct: 122 QKGYCHMFDVYYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHY-GRAGLP 180

Query: 167 G-AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
           G A +L   M+    C P   SYN+++ + +A N   +V  ++ ++   G+ P + ++ +
Sbjct: 181 GQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGV 240

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           ++  LC   +   AC    +M   G +P  + ++TL   L
Sbjct: 241 VMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHAL 280


>gi|357460285|ref|XP_003600424.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489472|gb|AES70675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 393

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 131/268 (48%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+L+ G CK   +  A   L  MI++ VEPN+VTYN L++G              K + 
Sbjct: 126 FTTLVDGLCKDGEVKKARNVLAIMIKQRVEPNIVTYNSLMDGYF----------LVKEVN 175

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++F+ + +RG+ P+V S+ ++++   +      + +    M  K + P    Y+S++
Sbjct: 176 KAKQLFNTISLRGMTPNVRSYKVMINGLCKNKMVDEAANLFKEMHSKNMVPDTVAYNSLI 235

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   RI D  + +GEM   G   +  TYN            + A+ L  ++K  G+ 
Sbjct: 236 DGLCKSRRIYDVWDFIGEMHDRGQPANIITYNSLLDGLCKNHQVDKAITLLTKIKNQGI- 294

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+++Y IL+       R+   +E++ D+   G   D   YT++I+GLC++    EA  
Sbjct: 295 RPNIYTYTILVDGLCKNGRLRDAQEVYQDLLNKGYQLDARIYTVMINGLCKEGFLDEALS 354

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              +M +    P  VT+E   R L +SD
Sbjct: 355 LLSKMEDNKCTPDGVTYEITIRALFESD 382



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 142/298 (47%), Gaps = 37/298 (12%)

Query: 17  MAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI 75
           +A+ F    IER  V+P+VV YN +++ +C+          +K + +   ++ EM  + I
Sbjct: 21  IAKGFHLNHIERLLVKPDVVMYNTIIDILCK----------DKLVSDGCDLYSEMIDKKI 70

Query: 76  EPDVTSFSIVLHV--------------YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            PDV +++ +++               +S   Q + ++  LN M  K + P + T++++V
Sbjct: 71  YPDVVTYNTLIYSLLNFVYIKIRKEYGFSILGQMKEAVGLLNQMTSKTVTPNIRTFTTLV 130

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G ++ A  +L  M++  V P+  TYN     Y   K+ N A +L+  +   G+ 
Sbjct: 131 DGLCKDGEVKKARNVLAIMIKQRVEPNIVTYNSLMDGYFLVKEVNKAKQLFNTISLRGM- 189

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ SY ++I        +D    ++ ++    + PD  +Y  LI GLC+ ++  +   
Sbjct: 190 TPNVRSYKVMINGLCKNKMVDEAANLFKEMHSKNMVPDTVAYNSLIDGLCKSRRIYDVWD 249

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
           +  EM ++G     +T+ +L  GL ++  +           +++IT  ++ +N   +P
Sbjct: 250 FIGEMHDRGQPANIITYNSLLDGLCKNHQV-----------DKAITLLTKIKNQGIRP 296


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 131/263 (49%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I+G+     I+ A R L  M  +G+EP+  TY  L++G+C+          E  + 
Sbjct: 287 YNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCK----------EGRLE 336

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +FD+M   G+ P+  +++ ++  Y      + +    + M +KGI P+V+TY+ +V
Sbjct: 337 EASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLV 396

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+ +A++++ EM + G+ P A TYN     Y    +A  A  L+ +M   G+ 
Sbjct: 397 HALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGI- 455

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P   +Y  LI +    NRM    +++  +   G+ PD+  +  ++ G C     + A  
Sbjct: 456 EPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFM 515

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
              EM  K + P +VTF TL +G
Sbjct: 516 LLKEMDRKSVPPDEVTFNTLMQG 538



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 142/279 (50%), Gaps = 11/279 (3%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           + K+NR++MA     EM    +   V T+N+++N +C+          E  ++ A +   
Sbjct: 224 FLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCK----------EGKLKKAREFIG 273

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
            M   G +P+V S++ ++H YS     + +   L+ M+ KGI P   TY S++  +C  G
Sbjct: 274 FMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEG 333

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           R+E+A  L  +MV  G+ P+A TYN     Y  + D   A     +M + G+ +P++ +Y
Sbjct: 334 RLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGI-MPSVSTY 392

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N+L+       RM    ++  +++  G+ PD  +Y +LI+G       K+A     EM+ 
Sbjct: 393 NLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLS 452

Query: 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           KG+ P  VT+ +L   L + + ++    L +K+ ++ ++
Sbjct: 453 KGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS 491



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 140/285 (49%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  ++   CK  ++  A  F+G M   G +PNVV+YN +++G   R +          I 
Sbjct: 252 FNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGN----------IE 301

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D MRV+GIEPD  ++  ++    +  + + +    + M E G+ P   TY++++
Sbjct: 302 GARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLI 361

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C+ G +E A     EMV+ G+ PS  TYN              A  + ++M++ G+ 
Sbjct: 362 DGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGI- 420

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+  +YNILI  +          ++ N++   G+ P   +YT LI+ L  + + KEA  
Sbjct: 421 IPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADD 480

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F +++++G+ P  + F  +  G   +  +     L K++D +S+
Sbjct: 481 LFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSV 525



 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 139/292 (47%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH---------- 51
           Y SLI G CK  R++ A     +M+E G+ PN VTYN L++G C +  L           
Sbjct: 322 YGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMV 381

Query: 52  -----PSER----------FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                PS             E  +  A+ +  EMR +GI PD  +++I+++ YSR    +
Sbjct: 382 KKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAK 441

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + D  N M  KGI PT  TY+S++  L    R+++A++L  +++  GV P    +N   
Sbjct: 442 KAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMV 501

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +    +   A  L ++M    +  P+  ++N L+       +++  R + +++K  G+
Sbjct: 502 DGHCANGNVERAFMLLKEMDRKSV-PPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGI 560

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            PD  SY  LI G   +   K+A +   EM+  G  P  +T+  L + L ++
Sbjct: 561 KPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKN 612



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 10/152 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+ +++ G C    ++ A   L EM  + V P+ VT+N L+ G CR          E  +
Sbjct: 496 MFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCR----------EGKV 545

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + DEM+ RGI+PD  S++ ++  Y R    + +    + M   G  PT+ TY+++
Sbjct: 546 EEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNAL 605

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
           +KCLC     + AEELL EMV  G+ P   TY
Sbjct: 606 IKCLCKNQEGDLAEELLKEMVNKGISPDDSTY 637



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 114/240 (47%), Gaps = 10/240 (4%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A K F  M+ +GI P + + + +L ++ + ++ +++      M    I  TV T++ +V 
Sbjct: 198 AFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVN 257

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  G+++ A E +G M   G  P+  +YN     Y  R +  GA ++   M+  G+  
Sbjct: 258 VLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGI-E 316

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+ ++Y  LI       R++    +++ +   GL P+  +Y  LI G C K   + A  Y
Sbjct: 317 PDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSY 376

Query: 243 FVEMIEKGLLPQKVTFETLYRGLI-------QSDMLRTWRRLKKKLDEESITFGSEFQNY 295
             EM++KG++P   T+  L   L          DM++  R  KK +  ++IT+      Y
Sbjct: 377 RDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMR--KKGIIPDAITYNILINGY 434



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 96/191 (50%), Gaps = 11/191 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLIY   + NR+  A+    +++++GV P+V+ +N +++G C   +          + 
Sbjct: 462 YTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGN----------VE 511

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  EM  + + PD  +F+ ++    R  + + +   L+ MK +GI P   +Y++++
Sbjct: 512 RAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLI 571

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G I+DA  +  EM+  G  P+  TYN   K     ++ + A +L ++M   G+ 
Sbjct: 572 SGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGIS 631

Query: 182 VPNMHSYNILI 192
            P+  +Y  LI
Sbjct: 632 -PDDSTYLSLI 641


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 137/286 (47%), Gaps = 11/286 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G CK      A R L  M +   +P+VV Y  L++ +C+          ++  
Sbjct: 181 IYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCK----------DRQQ 230

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F EM  +GI P++ + + +++      + +     LN M +  I P   + ++V
Sbjct: 231 TQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTV 290

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  LC  G +  A +++  M ++GV P   TY      +  R + + A+K++  M   G 
Sbjct: 291 VDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKG- 349

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN+ SYN LI  +  + RMD    ++ ++    L P+  +Y  LIHGLC   + ++A 
Sbjct: 350 CAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAI 409

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             F EM+  G +P  VT+  L   L ++  L     L K ++  ++
Sbjct: 410 ALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNL 455



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 133/267 (49%), Gaps = 11/267 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T+++   CK   +  A   +  M + GVEP+VVTY  L++G C R+ +            
Sbjct: 288 TTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEM----------DE 337

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A KVFD M  +G  P+V S++ +++ Y +  +   ++     M  + + P   TY++++ 
Sbjct: 338 AVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIH 397

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  GR++DA  L  EMV  G  P   TY             + AM L + ++   L  
Sbjct: 398 GLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNL-D 456

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++  Y I+I        ++  R++++++   GL P++ +Y ++ HGLC++    EA + 
Sbjct: 457 PDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKL 516

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSD 269
           F+EM E        T+ T+ +G ++++
Sbjct: 517 FMEMDENACSADGCTYNTITQGFLRNN 543



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 131/282 (46%), Gaps = 11/282 (3%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           SL+Y  C +         L EM++  + PN ++   +++ +C+          E  +  A
Sbjct: 254 SLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCK----------EGMVAQA 303

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             V D M   G+EPDV +++ ++  +    +   ++   + M  KG  P V +Y++++  
Sbjct: 304 HDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLING 363

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C   R++ A  L  EM R  + P+  TYN              A+ L+R+M   G  +P
Sbjct: 364 YCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQ-IP 422

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++ +Y IL+        +D    +   ++GS L PD+  YT++I G+C   + ++A   F
Sbjct: 423 DLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLF 482

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
             +  KGL P   T+  +  GL +  +L    +L  ++DE +
Sbjct: 483 SNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENA 524



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 13/261 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C +NR++ A   L ++++ G +P+  ++  L+ G+C           E  I  A 
Sbjct: 115 LINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLC----------LEGQIGEAL 164

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSVVKC 123
            +FD+M   G +PDV  ++ +++   +      ++  L  M EKG C P V  Y +++  
Sbjct: 165 HLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSM-EKGNCQPDVVVYGTLIHS 223

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC   +   A  L  EM+  G+ P+  T N          +      L  +M +  + +P
Sbjct: 224 LCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKI-MP 282

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N  S   ++        +    ++ + +  SG+ PD+ +YT LI G C + +  EA + F
Sbjct: 283 NAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVF 342

Query: 244 VEMIEKGLLPQKVTFETLYRG 264
             M+ KG  P   ++ TL  G
Sbjct: 343 DMMVHKGCAPNVFSYNTLING 363



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 11/194 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G C + R+  A     EM+  G  P++VTY +LL+ +C+   L  +    K I 
Sbjct: 392 YNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIE 451

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            +           ++PD+  ++IV+    RA + + + D  + +  KG+ P V TY+ + 
Sbjct: 452 GS----------NLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMT 501

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +++A +L  EM  N       TYN   + +    + + A++L  +M   G  
Sbjct: 502 HGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFS 561

Query: 182 VPNMHSYNILIGMF 195
             ++ +  +L+GM 
Sbjct: 562 C-DVSTTTLLVGML 574



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 91/226 (40%), Gaps = 4/226 (1%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
            T+ +A   F+ M      P +  F+ +L   ++  +    L     M   GI   V T 
Sbjct: 53  NTLDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTL 112

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + ++   C   R+  A  +L ++++ G  P   ++    K          A+ L+ +M  
Sbjct: 113 NVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIW 172

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
           +G   P++  Y  LI              +   ++     PD+  Y  LIH LC+ ++  
Sbjct: 173 EGF-QPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQT 231

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           +A   F EMI KG+ P  VT  +L   L     L  W+ +   L+E
Sbjct: 232 QAFNLFSEMITKGISPNIVTCNSLVYALCN---LGEWKHVNTLLNE 274



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 10/140 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT +I G C+   ++ A      +  +G++PNV TYN++ +G+C+R  L          
Sbjct: 461 IYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLL---------- 510

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+F EM       D  +++ +   + R ++   ++  L  M  +G    V+T + +
Sbjct: 511 DEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTTLL 570

Query: 121 VKCLCSCGRIEDAEELLGEM 140
           V  L   G  +     L +M
Sbjct: 571 VGMLSDDGLDQSEAHKLEDM 590


>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 489

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 148/299 (49%), Gaps = 30/299 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L  GWC+      A   L +M E GV P   TYN++L G  R             I+
Sbjct: 200 YNTLADGWCRAKDTSRALDLLRQMAESGVTPTKTTYNIILKGFFRAGQ----------IQ 249

Query: 62  NAEKVFDEMRVRGI-----EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           +A   F +M+ RG      +PD+ S++ ++H    A Q   +    + M ++G  P+VAT
Sbjct: 250 HAWNFFLQMKKRGAKDESCKPDIVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCTPSVAT 309

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+++++ +C  G +EDA  +  +MVR    P+  TY    +        + AMKL  +MK
Sbjct: 310 YNALIQVICKKGNVEDAVTVFDDMVRKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMK 369

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV-KGSGLGPDLDSYTMLIHGLCEKQK 235
            +G C P + +YN+LI        ++    ++  + KG    P+ D+Y ++I  +  +++
Sbjct: 370 GEG-CEPVVQTYNVLIRYSFEEGEIEKALCLFERMSKGEDCLPNQDTYNIIISAMFVRKR 428

Query: 236 WKE---ACQYFVEMIEKGLLPQKVTFETLYRGL-------IQSDMLR---TWRRLKKKL 281
            ++   A +  +EM+E+G LP++     +  GL       I  D+LR    +RRL++++
Sbjct: 429 AEDMATAARMVMEMVERGYLPRRFMLNRVLNGLMLTGNQQISRDLLRMQEKYRRLRREI 487



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 4/163 (2%)

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
           E+   P V TY+++    C       A +LL +M  +GV P+  TYN   K +       
Sbjct: 190 ERRFPPDVVTYNTLADGWCRAKDTSRALDLLRQMAESGVTPTKTTYNIILKGFFRAGQIQ 249

Query: 167 GAMKLYRQMKEDGL----CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS 222
            A   + QMK+ G     C P++ SY  +I       ++D  R++++++   G  P + +
Sbjct: 250 HAWNFFLQMKKRGAKDESCKPDIVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCTPSVAT 309

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           Y  LI  +C+K   ++A   F +M+ K  +P  VT+  L RGL
Sbjct: 310 YNALIQVICKKGNVEDAVTVFDDMVRKDYMPNVVTYTVLIRGL 352


>gi|357127090|ref|XP_003565218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Brachypodium distachyon]
          Length = 886

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 142/301 (47%), Gaps = 46/301 (15%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERG---------------------------------- 29
           +L+YG+C+   +DMA    G+M   G                                  
Sbjct: 272 TLVYGFCRTEELDMALEMTGDMARLGFVPSEANCSFMLDGLRKKGRVEEAFRLACQLGEL 331

Query: 30  -VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
            + PN+  YN LLN +C+                A+++ +EM  +G+EP+  +++I++H 
Sbjct: 332 RMVPNIFAYNALLNNMCKNG----------MFSEADRLVNEMSDKGLEPNEVTYAILIHS 381

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
             +      +L  L+ M+EKG+  TV  Y+S++ C C    ++ A   L EMV  G+ P+
Sbjct: 382 LCKRGMMDDALCMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPN 441

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
           A +Y+        + D +GA++L+R+M E G+   N +++  LI  F    +MD    ++
Sbjct: 442 AASYSPVIAGLCRKGDLSGAVELHRKMAEKGVAW-NTYTFTALINGFCKAKKMDEASRLF 500

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           N +  S L P+  ++  +I G C     ++A Q + +M+ +GL P   T+ +L  GL  +
Sbjct: 501 NKMTESNLEPNEVTFNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLISGLCLT 560

Query: 269 D 269
           D
Sbjct: 561 D 561



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 130/261 (49%), Gaps = 12/261 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T+L++G+C+  R+  A     EM   G + +++++ +++    ++   H SE+       
Sbjct: 586 TALLHGFCREGRLTEAYHVWNEMAMWGGKLDLISFTIIVYAALKQ---HDSEK------- 635

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           +  +F EM+ +G+ PD    + ++++YS+      +L+  + M   G  P   TY+++V 
Sbjct: 636 SCVLFREMKEKGVRPDNVFHTCMINMYSKEGNMVQALNCWDEMIADGHLPNTVTYTALVN 695

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC    +  AE L  EM+ +   P++ T+NCF   +    +   A  LY  M +  L  
Sbjct: 696 NLCKSWHLSSAELLCKEMLASHFLPNSYTFNCFLDYFATEGNLETAKDLYFAMLQGFL-- 753

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
            N+ S N LI  F  + ++    ++ +    +G  PD  SY+ +IH LC+K    EA + 
Sbjct: 754 ANIVSVNTLIKGFCKVGQIQEAIDLISRSTENGFFPDCISYSTVIHELCKKGDINEAIEL 813

Query: 243 FVEMIEKGLLPQKVTFETLYR 263
           + EM+ KG+ P  V +  L R
Sbjct: 814 WNEMLYKGVKPDIVAYNILIR 834



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 123/255 (48%), Gaps = 11/255 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI   CK + +DMA  FL EM+E G+ PN  +Y+ ++ G+CR+  L           
Sbjct: 410 YNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRKGDL----------S 459

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++  +M  +G+  +  +F+ +++ + +A +   +    N M E  + P   T+++V+
Sbjct: 460 GAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEASRLFNKMTESNLEPNEVTFNAVI 519

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G I  A +L  +M+  G+ P   TY            A+ A +    + E+   
Sbjct: 520 EGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLISGLCLTDGASKAKEFVADL-ENNCS 578

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V N  S   L+  F    R+     +WN++   G   DL S+T++++   ++   +++C 
Sbjct: 579 VLNKFSLTALLHGFCREGRLTEAYHVWNEMAMWGGKLDLISFTIIVYAALKQHDSEKSCV 638

Query: 242 YFVEMIEKGLLPQKV 256
            F EM EKG+ P  V
Sbjct: 639 LFREMKEKGVRPDNV 653



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 145/335 (43%), Gaps = 51/335 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+ I  +C++  +D A+  +  M + G + + V YNVL+ G+C+           + +
Sbjct: 199 VYTAGIRAYCEVRNLDGAKGLVARMQDEGDKVSAVPYNVLIYGLCK----------NQRV 248

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLD------KLNFMKEKGIC--- 111
           R A  V + M  RG+  D  +   +++ + R  +  ++L+      +L F+  +  C   
Sbjct: 249 REAVDVKNSMLARGVAADEVTCRTLVYGFCRTEELDMALEMTGDMARLGFVPSEANCSFM 308

Query: 112 --------------------------PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
                                     P +  Y++++  +C  G   +A+ L+ EM   G+
Sbjct: 309 LDGLRKKGRVEEAFRLACQLGELRMVPNIFAYNALLNNMCKNGMFSEADRLVNEMSDKGL 368

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P+  TY         R   + A+ +  +M+E G+ +  ++ YN LI      + +DM  
Sbjct: 369 EPNEVTYAILIHSLCKRGMMDDALCMLDRMREKGVRM-TVYPYNSLINCCCKKDDLDMAM 427

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
              +++   GL P+  SY+ +I GLC K     A +   +M EKG+     TF  L  G 
Sbjct: 428 GFLSEMVEIGLTPNAASYSPVIAGLCRKGDLSGAVELHRKMAEKGVAWNTYTFTALINGF 487

Query: 266 IQSDMLRTWRRLKKKLDEES-----ITFGSEFQNY 295
            ++  +    RL  K+ E +     +TF +  + Y
Sbjct: 488 CKAKKMDEASRLFNKMTESNLEPNEVTFNAVIEGY 522



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 122/291 (41%), Gaps = 27/291 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + ++I G+C +  I  A +   +M+ RG+ P+  TY  L++G+C       ++ F   + 
Sbjct: 515 FNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLISGLCLTDGASKAKEFVADLE 574

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           N                         A  V++EM + G + D+ SF+I+++   + H  +
Sbjct: 575 NNCSVLNKFSLTALLHGFCREGRLTEAYHVWNEMAMWGGKLDLISFTIIVYAALKQHDSE 634

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            S      MKEKG+ P    ++ ++      G +  A     EM+ +G  P+  TY    
Sbjct: 635 KSCVLFREMKEKGVRPDNVFHTCMINMYSKEGNMVQALNCWDEMIADGHLPNTVTYTALV 694

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A  L ++M      +PN +++N  +  F     ++  ++++  +   G 
Sbjct: 695 NNLCKSWHLSSAELLCKEMLASHF-LPNSYTFNCFLDYFATEGNLETAKDLYFAML-QGF 752

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
             ++ S   LI G C+  + +EA        E G  P  +++ T+   L +
Sbjct: 753 LANIVSVNTLIKGFCKVGQIQEAIDLISRSTENGFFPDCISYSTVIHELCK 803



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 12/228 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T +I  + K   +  A     EMI  G  PN VTY  L+N +C+  S H        + 
Sbjct: 655 HTCMINMYSKEGNMVQALNCWDEMIADGHLPNTVTYTALVNNLCK--SWH--------LS 704

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE +  EM      P+  +F+  L  ++     + + D L F   +G    + + ++++
Sbjct: 705 SAELLCKEMLASHFLPNSYTFNCFLDYFATEGNLETAKD-LYFAMLQGFLANIVSVNTLI 763

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C  G+I++A +L+     NG  P   +Y+    E   + D N A++L+ +M   G+ 
Sbjct: 764 KGFCKVGQIQEAIDLISRSTENGFFPDCISYSTVIHELCKKGDINEAIELWNEMLYKGV- 822

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
            P++ +YNILI         D    I+ D+   G+ P+  ++  L  G
Sbjct: 823 KPDIVAYNILIRWCNIHGESDKCLGIYIDMVKKGVQPNWHTHRALFVG 870



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 75/182 (41%), Gaps = 1/182 (0%)

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
           L+     GI P   T S ++  L    +   A  L   M+ +GV      Y    + Y  
Sbjct: 150 LHLSLSAGIAPDQHTASQILFSLVKIRQFALARHLFDGMLHSGVLLDEYVYTAGIRAYCE 209

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
            ++ +GA  L  +M+++G  V  +  YN+LI       R+    ++ N +   G+  D  
Sbjct: 210 VRNLDGAKGLVARMQDEGDKVSAV-PYNVLIYGLCKNQRVREAVDVKNSMLARGVAADEV 268

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +   L++G C  ++   A +   +M   G +P +     +  GL +   +    RL  +L
Sbjct: 269 TCRTLVYGFCRTEELDMALEMTGDMARLGFVPSEANCSFMLDGLRKKGRVEEAFRLACQL 328

Query: 282 DE 283
            E
Sbjct: 329 GE 330


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 133/268 (49%), Gaps = 26/268 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ G+CK  ++   +     M+++G+ P+VVTYN L++G C            K + 
Sbjct: 268 FNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYC----------LVKEVN 317

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F+ M   G+ PD+ S++I+++ + +  +   +++  N M  K I P V TY+S++
Sbjct: 318 TAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLI 377

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GRI  A +L+ +M   GV P+  TYN            + A+ L  + K+ G+ 
Sbjct: 378 DGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGI- 436

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+M++Y ILI     +   D+                +++Y ++IHG C+K  + EA  
Sbjct: 437 QPSMYTYTILIDGLCKVEGYDIT---------------VNTYNVMIHGFCKKGLFDEALS 481

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              +M +   +P  VT+E   R L+ ++
Sbjct: 482 LLSKMKDSSCIPNAVTYEITIRSLLDNN 509



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 142/285 (49%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G CK+     A   L  +  + V+ N V YN ++ G+C+          +K + 
Sbjct: 163 YGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCK----------DKHVN 212

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  ++ EM  +GI P+V ++S ++  +    + + ++D  N +  + I P   T++ +V
Sbjct: 213 DAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILV 272

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   ++++ + +   M++ G+ P   TYN     Y   K+ N A  ++  M + G+ 
Sbjct: 273 DGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVN 332

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SYNILI  F  + ++D    ++N++    + P++ +Y  LI GL +  +   A Q
Sbjct: 333 -PDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQ 391

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              +M ++G+ P  +T+ ++   L ++  +     L  K  ++ I
Sbjct: 392 LVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGI 436



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 129/265 (48%), Gaps = 11/265 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++IYG CK   ++ A     EM+ +G+ PNVVTY+ L++G      L          
Sbjct: 197 MYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKL---------- 246

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           ++A  +F+++ +  I+PD  +F+I++  + +  + +        M ++GI P V TY+S+
Sbjct: 247 KDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSL 306

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C    +  A+ +   M + GV P   +YN     +   K  + AM L+ +M    +
Sbjct: 307 MDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNI 366

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +PN+ +YN LI       R+    ++ + +   G+ P++ +Y  +I  L +  +  +A 
Sbjct: 367 -IPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAI 425

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
               +  ++G+ P   T+  L  GL
Sbjct: 426 ALITKFKDQGIQPSMYTYTILIDGL 450



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 129/293 (44%), Gaps = 40/293 (13%)

Query: 28  RGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 87
           RG++PN+   N+L+   C+   L P +     I  A    D++   G   D  S+  ++H
Sbjct: 115 RGIKPNLFNCNILIYCFCQLG-LIPCQ-----IHQAFLFHDKLVALGFHLDQVSYGTLIH 168

Query: 88  VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
              +  + + +LD L  +  K +      Y++V+  +C    + DA +L  EMV  G+ P
Sbjct: 169 GLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISP 228

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQ--------------MKEDGLC------------ 181
           +  TY+     +        A+ L+ +              +  DG C            
Sbjct: 229 NVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVF 288

Query: 182 --------VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
                   +P++ +YN L+  +  +  ++  + I+N +   G+ PD+ SY +LI+G C+ 
Sbjct: 289 AMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKI 348

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +K  +A   F EM  K ++P  VT+ +L  GL +S  +    +L  ++ +  +
Sbjct: 349 KKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGV 401



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 93/199 (46%), Gaps = 30/199 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CKI ++D A     EM  + + PNVVTYN L++G+ +             I 
Sbjct: 338 YNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGR----------IS 387

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP--------- 112
            A ++ D+M  RG+ P++ +++ ++    + HQ   ++  +   K++GI P         
Sbjct: 388 YALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILI 447

Query: 113 -----------TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
                      TV TY+ ++   C  G  ++A  LL +M  +   P+A TY    +    
Sbjct: 448 DGLCKVEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLD 507

Query: 162 RKDANGAMKLYRQMKEDGL 180
             + + A KL+R+M   GL
Sbjct: 508 NNENDKAEKLFREMITRGL 526



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 22/169 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G  K  RI  A + + +M +RGV PN++TYN +++      +L  + + +K I 
Sbjct: 373 YNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIID------ALFKTHQVDKAIA 426

Query: 62  NAEKVFDE----------------MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFM 105
              K  D+                 +V G +  V ++++++H + +      +L  L+ M
Sbjct: 427 LITKFKDQGIQPSMYTYTILIDGLCKVEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKM 486

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
           K+    P   TY   ++ L      + AE+L  EM+  G+   + +Y C
Sbjct: 487 KDSSCIPNAVTYEITIRSLLDNNENDKAEKLFREMITRGLLNRSASYPC 535



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 114/306 (37%), Gaps = 61/306 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S    +   N +D A      ++ +   P    +N +L       SL  S+ +   + 
Sbjct: 54  YSSTSTTFHSNNDVDDAVSLFNRLLRQNPTPPAFEFNKIL------GSLVKSKHYHTVLS 107

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSR-------AHQPQLSLDKLNFMKEKGICPTV 114
            ++K    M  RGI+P++ + +I+++ + +        HQ  L  DKL  +   G     
Sbjct: 108 LSQK----MEFRGIKPNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVAL---GFHLDQ 160

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            +Y +++  LC  G    A +LL  +    V  +A  YN         K  N A  LY +
Sbjct: 161 VSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSE 220

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M                                       G+ P++ +Y+ LI G     
Sbjct: 221 MVS------------------------------------KGISPNVVTYSALISGFFVVG 244

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFG 289
           K K+A   F ++I + + P   TF  L  G  +   ++  +      +K+ +  + +T+ 
Sbjct: 245 KLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYN 304

Query: 290 SEFQNY 295
           S    Y
Sbjct: 305 SLMDGY 310



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 84/227 (37%), Gaps = 50/227 (22%)

Query: 99  LDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158
           L K+NF+          +YSS      S   ++DA  L   ++R    P A  +N     
Sbjct: 46  LTKINFI----------SYSSTSTTFHSNNDVDDAVSLFNRLLRQNPTPPAFEFNKILGS 95

Query: 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM--DMVREIWNDVKGSGL 216
               K  +  + L ++M+  G+  PN+ + NILI  F  L  +   + +      K   L
Sbjct: 96  LVKSKHYHTVLSLSQKMEFRGI-KPNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVAL 154

Query: 217 GPDLD--SYTMLIHGL-----------------------------------CEKQKWKEA 239
           G  LD  SY  LIHGL                                   C+ +   +A
Sbjct: 155 GFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDA 214

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              + EM+ KG+ P  VT+  L  G      L+    L  K+  E+I
Sbjct: 215 FDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENI 261


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 141/296 (47%), Gaps = 11/296 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G+CK   +  A R   EM+ R V PNVVTY  L +G+C++            +R
Sbjct: 430 YTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGD----------VR 479

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++  EM  +G+E +V +++ +++   +    + ++  +  M+  G    V TY++++
Sbjct: 480 AANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLI 539

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G  + A  +L EM+  G+ PS  TYN     +       G  KL   M E  + 
Sbjct: 540 DTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNV- 598

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN L+  +     M    EI+  +    + P+ ++Y +LI G C+ +  KEA  
Sbjct: 599 RPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALY 658

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
           +  EMIEKGL     ++  L R L +       R    K+  E +T   +  +++ 
Sbjct: 659 FHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKMRNEGLTAEPDVYSFYM 714



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 139/300 (46%), Gaps = 16/300 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTS+I   C   ++  A R L +M   GV  + V +  +++G C +  L  + R     
Sbjct: 324 VYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARR----- 378

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                +F+EM+ RG+  D  + + +++   RA + + +   L  M +KG+   V TY+ +
Sbjct: 379 -----LFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVL 433

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G + +A  +  EMV   V P+  TY         + D   A +L  +M   GL
Sbjct: 434 IDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGL 493

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            + N+++YN LI        ++    I  +++ +G   D+ +YT LI  LC+  ++  A 
Sbjct: 494 EL-NVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAH 552

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGSEFQNY 295
               EM++KG+ P   T+  L  G   S  +   ++     L+K +    +T+ S  + Y
Sbjct: 553 NMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQY 612



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 116/256 (45%), Gaps = 11/256 (4%)

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
           E    P+VVTY  +++G C R  L           NA K+ DEM  +G+E + T ++ V+
Sbjct: 280 EMSSPPDVVTYGTMVHGYCVRGEL----------ENAVKLLDEMAAKGLESNATVYTSVI 329

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
            +     Q   +L  L  M   G+      +++V+   CS G +  A  L  EM + G+ 
Sbjct: 330 ALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLA 389

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
               T+           +   A ++ ++M + GL V ++ +Y +LI  +     M     
Sbjct: 390 ADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDV-DVVTYTVLIDGYCKRGNMVEAFR 448

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           + N++ G  + P++ +YT L  GLC++   + A +   EM  KGL     T+ +L  GL 
Sbjct: 449 VHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLC 508

Query: 267 QSDMLRTWRRLKKKLD 282
           +   L    R+  +++
Sbjct: 509 KFGNLEQAMRIMTEME 524



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 114/245 (46%), Gaps = 14/245 (5%)

Query: 33  NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92
           NV ++N+LL  +     L          ++A + FDEM      PDV ++  ++H Y   
Sbjct: 254 NVCSHNILLKALLSAGRL----------KDACQHFDEM---SSPPDVVTYGTMVHGYCVR 300

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
            + + ++  L+ M  KG+      Y+SV+  LC+ G++ DA  +L +M  +GV   A  +
Sbjct: 301 GELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVF 360

Query: 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
                 +  + D   A +L+ +M++ GL    + ++  LI        +     +  ++ 
Sbjct: 361 TTVISGFCSKGDLAAARRLFEEMQKRGLAADRV-THTALINGLCRAGELKEADRVLQEMV 419

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
             GL  D+ +YT+LI G C++    EA +   EM+ + + P  VT+  L  GL +   +R
Sbjct: 420 DKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVR 479

Query: 273 TWRRL 277
               L
Sbjct: 480 AANEL 484



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 102/242 (42%), Gaps = 25/242 (10%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK----LNFMKEKGICPTVATYS 118
           + ++   +R  G+ P   S + VL         +L LD+       + +K +C    +++
Sbjct: 212 SAELLRRLRQYGLSPSPESCNAVLS--------RLPLDEAIALFRELPDKNVC----SHN 259

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++K L S GR++DA +   EM      P   TY      Y  R +   A+KL  +M   
Sbjct: 260 ILLKALLSAGRLKDACQHFDEM---SSPPDVVTYGTMVHGYCVRGELENAVKLLDEMAAK 316

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           GL   N   Y  +I +     ++     +  D+   G+  D   +T +I G C K     
Sbjct: 317 GL-ESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAA 375

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGSEFQ 293
           A + F EM ++GL   +VT   L  GL ++  L+   R     + K LD + +T+     
Sbjct: 376 ARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLID 435

Query: 294 NY 295
            Y
Sbjct: 436 GY 437


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 134/288 (46%), Gaps = 14/288 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI+G+  I +     + L +M  RG++P+  TY  LLN +C  + +H          
Sbjct: 245 YNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCALSEMH---------- 294

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 D M   G+ PD   F+I    Y++      ++D  N M++ G+ P V  Y +++
Sbjct: 295 ---SFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALI 351

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR++DAE    +M+  GV P+   +N              A +L  +M + G+C
Sbjct: 352 DALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGIC 411

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN   +N LI     + R+   R + + ++  G+ PD  SYT LI G C   +  EA +
Sbjct: 412 -PNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEK 470

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
            F  M+  GL P +VT+ TL  G   +  +     L +++  + +T G
Sbjct: 471 VFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPG 518



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 142/295 (48%), Gaps = 13/295 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ SL+YG C +++ + AE  + EM+++G+ PN V +N L+  +C    +    R     
Sbjct: 381 VFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRR----- 435

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                + D M   G+ PD  S++ ++  Y  A +   +    + M   G+ PT  TY+++
Sbjct: 436 -----LIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTL 490

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   CS  RI+DA  L  EM+R GV P   TYN         K  + A +LY  M   G 
Sbjct: 491 LHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGT 550

Query: 181 -CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C  ++++YNI++      N +D   +++  +   GL  ++ ++T++I  L +  + ++A
Sbjct: 551 KC--DIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDA 608

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
              F  +   GL+P  VT+  +   LI+   L  +  L   +++      S+  N
Sbjct: 609 MDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLN 663



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 139/327 (42%), Gaps = 43/327 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI   C++ R+  +    G +++ G   N +  N LL G+C        +R  + + 
Sbjct: 101 YSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLC------DGKRVGEAM- 153

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE---KGICPTVATYS 118
             + +   M   G  PD  S+SI+L  +   ++ + +L+ L  M     +   P V TY+
Sbjct: 154 --DVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYT 211

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +V+  LC     + AE +  +M+ NGV P+ +TYNC    Y         +++  +M   
Sbjct: 212 TVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSAR 271

Query: 179 GL--------------CV-----------------PNMHSYNILIGMFMALNRMDMVREI 207
           GL              C                  P+ H +NI    +     +D   +I
Sbjct: 272 GLKPDCYTYGSLLNYLCALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDI 331

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           +N ++  GL P++ +Y  LI  LC+  +  +A   F +MI +G+ P  V F +L  GL  
Sbjct: 332 FNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCT 391

Query: 268 SDMLRTWRRLKKKLDEESITFGSEFQN 294
            D       L  ++ ++ I   + F N
Sbjct: 392 VDKWERAEELVYEMLDQGICPNAVFFN 418



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 26/221 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y +L++G+C  +RID A     EM+ +GV P VVTYN +L+G+ +      ++       
Sbjct: 487 YNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMI 546

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  +  A K+F  +  +G++ ++ +F+I++    +  + +
Sbjct: 547 NSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKE 606

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++D    +   G+ P V TY  V + L   G +E+ + L   M +NG  P+++  N   
Sbjct: 607 DAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALV 666

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
           +    R D + A     ++ E    V    + ++LI +F +
Sbjct: 667 RRLLHRGDISRAGAYLSKLDERNFSV-EASTTSLLISIFTS 706



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 24/245 (9%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ-----------LSLDKLNFMKEK 108
           + +A K+FDE+ +      V +F+ +L+  SRA +             L +   N M  +
Sbjct: 30  LDDALKLFDELLIHARPASVVAFNQILNAVSRASRASGRRSSSTSESELVVSLFNRMVRE 89

Query: 109 ---GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
               + P   TYS ++ CLC  GR++ +    G +++ G   +    N   K     K  
Sbjct: 90  CSIKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRV 149

Query: 166 NGAMK-LYRQMKEDGLCVPNMHSYNILIGMFMALNR----MDMVREIWNDVKGSGLGPDL 220
             AM  L ++M E G C P+  SY+IL+  F   NR    ++++R + ND  G    P++
Sbjct: 150 GEAMDVLLQRMPELG-CTPDTVSYSILLKGFCNENRAEEALELLRMMAND-HGRSCPPNV 207

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK 280
            +YT +I GLC+ Q +  A   F +MI+ G+ P   T+  L  G +    +  W+ + + 
Sbjct: 208 VTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLS---IGKWKEVVQM 264

Query: 281 LDEES 285
           L++ S
Sbjct: 265 LEKMS 269


>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
 gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
          Length = 653

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 21/284 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  L+   C+ +R+  A + L EM  +G  P+ VTY  +++ +C    +  +        
Sbjct: 172 YNLLVRALCQNHRVGAARKMLDEMATKGCPPDDVTYGTIVSALCTLGRVDEATEVLSAAP 231

Query: 57  ---------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK 101
                          E  ++    V  +M  RG++P+V +++ +++ + +A + +++   
Sbjct: 232 PVAASYNAVILALCREFRMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAI 291

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
           L  M   G  P VAT++++V  L + GR+ DA ++   MV  G  PS  +YN   +    
Sbjct: 292 LARMVITGCTPNVATFTALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCS 351

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
             D  GA  +   M++ G C PN  +Y+ LI  F     +D    IWND+  SG  P++ 
Sbjct: 352 VGDLKGASSVLNDMEQHG-CFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVV 410

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            YT ++   C+K  + +A     +M+ +   P  VTF TL R L
Sbjct: 411 VYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTVTFNTLIRSL 454



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 117/268 (43%), Gaps = 16/268 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI    + N +       G M + GV+PNV TYN+L+  +C+             +
Sbjct: 136 LYNHLIDALLRENMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQ----------NHRV 185

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+ DEM  +G  PD  ++  ++       +   + + L+        P  A+Y++V
Sbjct: 186 GAARKMLDEMATKGCPPDDVTYGTIVSALCTLGRVDEATEVLSAAP-----PVAASYNAV 240

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   R+++   ++G+MV  G+ P+  TY      +    +   A  +  +M   G 
Sbjct: 241 ILALCREFRMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITG- 299

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN+ ++  L+G      R+    ++W  +   G  P   SY +LI GLC     K A 
Sbjct: 300 CTPNVATFTALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGAS 359

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
               +M + G  P   T+ TL  G  ++
Sbjct: 360 SVLNDMEQHGCFPNARTYSTLIDGFSKA 387



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 126/286 (44%), Gaps = 28/286 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           YT+++  +CK   + MA   L  M+  G  PNV T+  L+ G+     +H +    K   
Sbjct: 272 YTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTALVGGLFNDGRVHDALDMWKCMV 331

Query: 60  -----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  ++ A  V ++M   G  P+  ++S ++  +S+A    
Sbjct: 332 AEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLD 391

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++   N M   G  P V  Y+++V   C       AE L+ +M+     P+  T+N   
Sbjct: 392 GAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTVTFNTLI 451

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN-ILIGMFMALNRMDMVREIWNDVKGSG 215
           +     +    A+ ++ +M+  G C PN  +YN +L G+F   N  D ++ +  +++  G
Sbjct: 452 RSLCNCRRVGRALGVFHEMRRHG-CPPNGRTYNELLHGLFREGNCGDALQMVI-EMQNHG 509

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   L +Y  ++ GLC+ +  +EA  +   MI +G+ P   TF  +
Sbjct: 510 IELSLVTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPDAFTFTAI 555



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 131/304 (43%), Gaps = 50/304 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G C +  +  A   L +M + G  PN  TY+ L++G  +   L           
Sbjct: 342 YNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLD---------- 391

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA---HQPQLSLDKLNFMKEKGICPTVATYS 118
            A  ++++M   G +P+V  ++ ++ V+ +    +Q +  +DK   M  +   P   T++
Sbjct: 392 GAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDK---MLVENCPPNTVTFN 448

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE- 177
           ++++ LC+C R+  A  +  EM R+G  P+  TYN          +   A+++  +M+  
Sbjct: 449 TLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEMQNH 508

Query: 178 -------------DGLCV--------------------PNMHSYNILIGMFMALNRMDMV 204
                         GLC                     P+  ++  +I  +     + M 
Sbjct: 509 GIELSLVTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPDAFTFTAIIHAYCKEGEVRMA 568

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             I   +     G ++  YT+L+  LC + K ++A  Y ++M+ +G+ P  VT+  L RG
Sbjct: 569 AWILGAMNVVNCGRNILVYTILMAELCNQDKLEDAMVYLLKMLYEGIYPNTVTWNVLVRG 628

Query: 265 LIQS 268
           + ++
Sbjct: 629 VFRN 632



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 9/209 (4%)

Query: 67  FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC--PTVA-TYSSVVKC 123
             EMR+RG+     +    +  ++RA  P  +L           C  PT    Y+ ++  
Sbjct: 84  LQEMRLRGVPCTEGALVAAVGAFARAGAPDRALKTFYRAVHDLGCARPTAPRLYNHLIDA 143

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           L     +     + G M ++GV P+  TYN   +          A K+  +M   G C P
Sbjct: 144 LLRENMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQNHRVGAARKMLDEMATKG-CPP 202

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           +  +Y  ++     L R+D   E+      S   P   SY  +I  LC + + +E     
Sbjct: 203 DDVTYGTIVSALCTLGRVDEATEVL-----SAAPPVAASYNAVILALCREFRMQEVFAVV 257

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
            +M+ +GL P  +T+ T+     ++  LR
Sbjct: 258 GDMVGRGLQPNVITYTTIVNAFCKAGELR 286



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT L+   C  ++++ A  +L +M+  G+ PN VT+NVL+ GV R    +    F + I
Sbjct: 586 VYTILMAELCNQDKLEDAMVYLLKMLYEGIYPNTVTWNVLVRGVFRNLGCNNPSDFIQHI 645


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 146/303 (48%), Gaps = 46/303 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++SLIYG+C + +   A R   EM+ + + P+  T+N+L++ +C+          E  I+
Sbjct: 231 FSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCK----------EGKIK 280

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVY------------------------SRAHQPQL 97
            A+ V   M   G+EP V +++ ++  Y                        SR++   +
Sbjct: 281 EAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMI 340

Query: 98  S-LDKLNFMKE----------KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
           +   K+  + E          +GI P   TY+S++  LC  GRI  A EL+ EM  N + 
Sbjct: 341 NGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIP 400

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
               TYN     +   +  + A+ L +++KE G+  PNM +YNILI       ++   ++
Sbjct: 401 ADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGI-QPNMCTYNILIDGLCKGGQLKNAQD 459

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++ D+   G   +  +Y ++I+GLC++  + EA     +M + G++P  VT+ET+ + L 
Sbjct: 460 VFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQALF 519

Query: 267 QSD 269
             D
Sbjct: 520 HKD 522



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 145/320 (45%), Gaps = 44/320 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY+++I G CK   +  A     EMI + + P VVT++ L+ G C               
Sbjct: 195 MYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKF---------- 244

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           ++A ++F+EM ++ I PD  +F+I++    +  + + + + +  M ++G+ PTV TY+++
Sbjct: 245 KDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTL 304

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM----- 175
           +   C    +  A+ +L  + R  V P++ +YN     +   K  + A+ L+ +M     
Sbjct: 305 MDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGI 364

Query: 176 ---------KEDGLC-----------VPNMH---------SYNILIGMFMALNRMDMVRE 206
                      DGLC           V  MH         +YN LI +F     +D    
Sbjct: 365 APHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIA 424

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +   +K  G+ P++ +Y +LI GLC+  + K A   F +++ KG      T+  +  GL 
Sbjct: 425 LVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLC 484

Query: 267 QSDMLRTWRRLKKKLDEESI 286
           +  +      L  K+++  I
Sbjct: 485 KEGLFDEAEVLLSKMEDNGI 504



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 137/288 (47%), Gaps = 17/288 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G CK+ +   A + L ++  + V  NVV Y+ +++G+C+          +K + 
Sbjct: 161 YGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCK----------DKLVT 210

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  ++ EM V+ I P V +FS +++ +    + + +    N M  K I P   T++ +V
Sbjct: 211 DAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILV 270

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY---RGRKDANGAMKLYRQMKED 178
             LC  G+I++A+ ++  M++ GV P+  TYN     Y        A   + +  +M+  
Sbjct: 271 DALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMR-- 328

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
               PN  SYNI+I  F  +  +D    +++++   G+ P   +Y  LI GLC+  +   
Sbjct: 329 --VAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPY 386

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           A +   EM    +    VT+ +L     ++  +     L KK+ E  I
Sbjct: 387 AWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGI 434



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 121/265 (45%), Gaps = 19/265 (7%)

Query: 8   GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR----RASLHPSERFEKTIRNA 63
           G C   +++ A  F   ++  G   N VTY +L+NG+C+    RA+L    + E  + N 
Sbjct: 132 GLCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNT 191

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             V     + G+  D     +V   Y    +          M  K I PTV T+SS++  
Sbjct: 192 NVVMYSTIIDGLCKD----KLVTDAYGLYSE----------MIVKRIPPTVVTFSSLIYG 237

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C  G+ +DA  L  EMV   + P A T+N              A  +   M ++G+  P
Sbjct: 238 FCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGV-EP 296

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
            + +YN L+  +  +N +   + + + +    + P+  SY ++I+G C+ +   EA   F
Sbjct: 297 TVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLF 356

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQS 268
            EM  +G+ P KVT+ +L  GL ++
Sbjct: 357 HEMCCRGIAPHKVTYNSLIDGLCKA 381



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 111/253 (43%), Gaps = 46/253 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G+CKI  +D A     EM  RG+ P+ VTYN L++G+C+             I 
Sbjct: 336 YNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGR----------IP 385

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ DEM    I  D+ +++ ++ V+ +      ++  +  +KE GI P + TY+ ++
Sbjct: 386 YAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILI 445

Query: 122 KCLCSCGRIEDAEE-----------------------------------LLGEMVRNGVC 146
             LC  G++++A++                                   LL +M  NG+ 
Sbjct: 446 DGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGII 505

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P A TY    +    + +   A KL R+M   G+ V        L+G  + L  M+++  
Sbjct: 506 PDAVTYETIIQALFHKDENEKAQKLLREMVIKGVVVYAFEIRRTLVGRTLNLG-MNLISL 564

Query: 207 IWNDVKGSGLGPD 219
           +++ ++    G +
Sbjct: 565 LFSALECFSFGEE 577



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 94/209 (44%), Gaps = 18/209 (8%)

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLH--VYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
            + NA   F+ MR     P +  F+ +L   + ++ H P + L     M+ KG+ P + T
Sbjct: 46  VVDNAVLSFNRMRQIRQTPSIVEFNKILTYLIKTKNHYPTV-LSLSTQMESKGVKPDLFT 104

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
            S ++ C C  G++  A  +  ++++ G+C + +               N A+  +  + 
Sbjct: 105 LSILINCYCHLGQMTFAFSVFAKILKMGLCLNGKV--------------NEALLFHDHVL 150

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G  + N  +Y ILI     + +     ++   ++G  +  ++  Y+ +I GLC+ +  
Sbjct: 151 ALGFHL-NHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLV 209

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            +A   + EMI K + P  VTF +L  G 
Sbjct: 210 TDAYGLYSEMIVKRIPPTVVTFSSLIYGF 238


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 152/340 (44%), Gaps = 56/340 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y+++I G+CK   +D A   L EM+ R G+ P+VVTY  +++G+CR   +   +R  + +
Sbjct: 48  YSTVINGFCKQGEMDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKM---DRACEMV 104

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIV-------------LHVYSRAHQPQLSLDKLNF--- 104
           R       EM+++G+EPD  +FS +             L +Y         LD ++    
Sbjct: 105 R-------EMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSAL 157

Query: 105 ---------------------MKEKGIC-PTVATYSSVVKCLCSCGRIEDAEELLGEMVR 142
                                M+E G   P V TY++++   C  G +E A ++LG M  
Sbjct: 158 ITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEG 217

Query: 143 NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202
               P+  TY+          D + A+ L+R+M   G CVPN+ +Y  LI    A +++D
Sbjct: 218 RKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKG-CVPNVVTYTTLIHGLCAAHKVD 276

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
             R + +++  +    D  SY  L+ G C   + +EA Q F EM  K  LP ++T+  L 
Sbjct: 277 AARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLV 336

Query: 263 RGLIQSDMLRTWR------RLKKKLDEESITFGSEFQNYH 296
           RG   +  L   R      +    +D + +T+      Y 
Sbjct: 337 RGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYS 376



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 139/302 (46%), Gaps = 33/302 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+CK   ++ A + LG M  R   PNVVTY+ LL+G+C+   L           
Sbjct: 192 YTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLD---------- 241

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ---PQLSLDKLNFMKEKGICPT-VATY 117
            A  +F  M  +G  P+V +++ ++H    AH+    +L +D++        CP    +Y
Sbjct: 242 QALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMT----ATCCPADTVSY 297

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           ++++   C  GRIE+A++L  EM      P   TY C  + +        A  L   MK 
Sbjct: 298 NALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKT 357

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
                P++ +Y+I++  +    R     E   ++    + P+  +Y+ LI GLC+  +  
Sbjct: 358 AAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVN 417

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
            A    +E+++    P  VT+  +  GL  +D  RT         EE++T   E  N   
Sbjct: 418 HA----MEVLKNVDKPDVVTYTIVIEGLCGTD--RT---------EEALTLLEEMVNKRV 462

Query: 298 KP 299
           +P
Sbjct: 463 EP 464



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 127/289 (43%), Gaps = 27/289 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI+G C  +++D A   + EM       + V+YN LL+G CR             I 
Sbjct: 262 YTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGR----------IE 311

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVY---SRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            A+++F EM  +   PD  +++ ++  +   SR  + +  L+  N     GI P V TYS
Sbjct: 312 EAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLE--NMKTAAGIDPDVVTYS 369

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            VV       R  +A E + EM+   V P+A TY+            N AM++ + + + 
Sbjct: 370 IVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDK- 428

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
               P++ +Y I+I      +R +    +  ++    + P + ++  +I  LC      E
Sbjct: 429 ----PDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDE 484

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGL-------IQSDMLRTWRRLKKK 280
           A +  V M   GL P  VT+ TL  G        I  ++    RR  KK
Sbjct: 485 AWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKK 533



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 135/297 (45%), Gaps = 52/297 (17%)

Query: 30  VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMR-VRGIEPDVTSFSIVLHV 88
           V PN  TYNV++NG+C+           +    A +V  EMR  + + PD+ ++S V++ 
Sbjct: 5   VAPNERTYNVVVNGLCK----------ARLTSKAYEVLKEMRDGKSVAPDLVTYSTVING 54

Query: 89  YSRAHQPQLSLDKLNFMKEK-GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
           + +  +   + + L  M  + G+ P V TY+SVV  LC  G+++ A E++ EM   GV P
Sbjct: 55  FCKQGEMDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEP 114

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYR---------------------------------- 173
              T++     +   +  + A+KLY+                                  
Sbjct: 115 DKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELF 174

Query: 174 ---QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
              +M+EDG   P++ +Y  LI  F     ++   ++   ++G    P++ +Y+ L+HGL
Sbjct: 175 QEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGL 234

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           C+     +A   F  M  KG +P  VT+ TL  GL  +  +   R L   +DE + T
Sbjct: 235 CKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLL---MDEMTAT 288



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 117/257 (45%), Gaps = 22/257 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ ++ G+ +  R   A  F+ EMI R V PN VTY+ L++G+C+   ++ +    + ++
Sbjct: 368 YSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAM---EVLK 424

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N +K           PDV +++IV+       + + +L  L  M  K + P+V T++SV+
Sbjct: 425 NVDK-----------PDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVI 473

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
             LC  G +++A +LL  M  +G+ P   TY    + +        A +L+  M+     
Sbjct: 474 GALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKK 533

Query: 181 ------CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
                  VP   +++ LI        +D    +  +++     P  +    ++ GL    
Sbjct: 534 SSSAANLVPE-QAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAG 592

Query: 235 KWKEACQYFVEMIEKGL 251
           + +EA +    + + GL
Sbjct: 593 RTEEAGKLINSISKVGL 609



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 1/125 (0%)

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
           +R  V P+  TYN         +  + A ++ ++M++     P++ +Y+ +I  F     
Sbjct: 1   MREFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGE 60

Query: 201 MDMVREIWND-VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           MD   EI  + V   G+ PD+ +YT ++ GLC   K   AC+   EM  KG+ P K TF 
Sbjct: 61  MDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFS 120

Query: 260 TLYRG 264
            L  G
Sbjct: 121 ALITG 125


>gi|359492357|ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 476

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 144/281 (51%), Gaps = 12/281 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ GW K   +  A     EM++ G +P++VTY ++++ +C+             + 
Sbjct: 183 YSILLEGWGKAPNLPKAREIFREMVDMGCDPDIVTYGIMVDILCKAGR----------VD 232

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  EM     +P    +S+++H Y   ++ + ++     M+   I   VA Y++++
Sbjct: 233 EAVGIVKEMDSSVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNALI 292

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   ++++A  +L EM   G+ P++ T N          D + A +++R+M +  +C
Sbjct: 293 GAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMIK--VC 350

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y ++I MF   ++++M  ++W  ++     P + ++++LI+GLC+K    +AC 
Sbjct: 351 DPDADTYTMMIKMFCENDKLEMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNASKACI 410

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
              EMIEKG+ P  VTF  L + LI+         L++K++
Sbjct: 411 LLEEMIEKGIRPSSVTFGKLKQLLIKEGREDVLEFLQEKMN 451



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 80/152 (52%), Gaps = 11/152 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI  +CK+N++  A R L EM  +G+ PN  T N++LN +        + R     
Sbjct: 287 VYNALIGAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFR----- 341

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                VF  M ++  +PD  ++++++ ++    + +++L    +M+ K   P++ T+S +
Sbjct: 342 -----VFRRM-IKVCDPDADTYTMMIKMFCENDKLEMALKVWKYMRLKQFVPSMHTFSVL 395

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
           +  LC  G    A  LL EM+  G+ PS+ T+
Sbjct: 396 INGLCKKGNASKACILLEEMIEKGIRPSSVTF 427



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 113/250 (45%), Gaps = 41/250 (16%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           +V +F I++  Y+R+ + + ++   N M++  + P +A ++S++  LC    +  A+E+ 
Sbjct: 110 NVETFCIIMRKYARSQKVKEAVYTFNIMEKYDVPPNLAAFNSLLSALCKSKNVVKAQEIF 169

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
             M ++   P ++TY+   + +    +   A +++R+M + G C P++ +Y I++ +   
Sbjct: 170 NGM-KDQFIPDSKTYSILLEGWGKAPNLPKAREIFREMVDMG-CDPDIVTYGIMVDILCK 227

Query: 198 LNRMD----MVREI-------------------------------WNDVKGSGLGPDLDS 222
             R+D    +V+E+                               + D++ + +  D+  
Sbjct: 228 AGRVDEAVGIVKEMDSSVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAV 287

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLK 278
           Y  LI   C+  K K A +   EM  KG+ P   T   +   LI      +  R +RR+ 
Sbjct: 288 YNALIGAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMI 347

Query: 279 KKLDEESITF 288
           K  D ++ T+
Sbjct: 348 KVCDPDADTY 357


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 134/265 (50%), Gaps = 11/265 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT +I G+C+   +  A R   EM+  G  P+VVTYN LLNG+C+          E+ +
Sbjct: 336 IYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCK----------ERRL 385

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +AE++ +EM+ RG+ PD+ +F+ ++H Y R    + +L   + + ++ + P + TY+++
Sbjct: 386 SDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTL 445

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  +C  G +  A EL  +M    + P+  TY+     +  +   + A     +M   G+
Sbjct: 446 IDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGI 505

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VPN+ +YN +I  +     +   ++    ++   + PDL +Y  LIHG  ++ K  EA 
Sbjct: 506 -VPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAF 564

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
                M  + + P  VT+  +  G 
Sbjct: 565 NLLKIMENENVQPDAVTYNMIISGF 589



 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 128/253 (50%), Gaps = 11/253 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI+G+C+   I+ A +F   + ++ + P++VTYN L++G+CR+  L           
Sbjct: 407 FTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLG---------- 456

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +++D+M  R I P+  ++SI++  +    Q   +   L+ M  KGI P + TY+S++
Sbjct: 457 KANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSII 516

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C  G +   ++ L +M  + V P   TYN     Y      + A  L + M+ + + 
Sbjct: 517 KGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENV- 575

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN++I  F     M     ++  +   G+ PD  +Y  +I+G       K++ Q
Sbjct: 576 QPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQ 635

Query: 242 YFVEMIEKGLLPQ 254
              EM++KGL P 
Sbjct: 636 LHDEMLQKGLAPD 648



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 139/285 (48%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI G+C+   ++ A RF  EM  R V P+VV+++ L+    RR  +           
Sbjct: 267 FNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMD---------- 316

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A +   EMR  G+ PD   +++V+  + RA     +L   + M   G  P V TY++++
Sbjct: 317 HAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLL 376

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R+ DAEELL EM   GV P   T+      Y    +   A++ +  + +  L 
Sbjct: 377 NGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRL- 435

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN LI        +    E+W+D+    + P+  +Y++LI   CEK +   A  
Sbjct: 436 RPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFA 495

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +  EM+ KG++P  +T+ ++ +G  +S  +   ++   K+  + +
Sbjct: 496 FLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKV 540



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 128/251 (50%), Gaps = 11/251 (4%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           ++ A   +  M+ +G++P +VTYN +L G+ R        R++K    A +VF  M   G
Sbjct: 210 VEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNG------RWDK----AREVFRAMDACG 259

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           + PDV SF++++  + RA + + +L     M+ + + P V ++S ++      G ++ A 
Sbjct: 260 VAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAA 319

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           E L EM   G+ P    Y      +        A+++  +M   G C+P++ +YN L+  
Sbjct: 320 EYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFG-CLPDVVTYNTLLNG 378

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                R+    E+ N++K  G+ PDL ++T LIHG C     ++A Q+F  + ++ L P 
Sbjct: 379 LCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPD 438

Query: 255 KVTFETLYRGL 265
            VT+ TL  G+
Sbjct: 439 IVTYNTLIDGM 449



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 127/270 (47%), Gaps = 16/270 (5%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           E N  T N++++  C+  +L   E         + V  EM  R + PDV + ++++    
Sbjct: 156 EVNTYTLNIMVHSYCK--TLQFGE--------VDTVISEMEKRCVFPDVVTHNVMVDARF 205

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
           RA   + ++  ++ M  KGI P + TY+SV+K L   GR + A E+   M   GV P   
Sbjct: 206 RAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVR 265

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           ++N     +    +   A++ Y++M+   +  P++ S++ LIG+F     MD   E   +
Sbjct: 266 SFNMLIGGFCRAGELEEALRFYKEMRGRRV-TPDVVSFSCLIGLFTRRGEMDHAAEYLRE 324

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           ++  GL PD   YTM+I G C      EA +   EM+  G LP  VT+ TL  GL +   
Sbjct: 325 MREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERR 384

Query: 271 LRTWRRLKKKLDEESI-----TFGSEFQNY 295
           L     L  ++ E  +     TF +    Y
Sbjct: 385 LSDAEELLNEMKERGVPPDLCTFTTLIHGY 414



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 1/171 (0%)

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
           RA  P L+ D    +          T + +V   C   +  + + ++ EM +  V P   
Sbjct: 136 RAGWPHLTADAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVV 195

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           T+N          D   AM L   M   G+  P + +YN ++   +   R D  RE++  
Sbjct: 196 THNVMVDARFRAGDVEAAMALIDSMVSKGI-KPGLVTYNSVLKGLLRNGRWDKAREVFRA 254

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   G+ PD+ S+ MLI G C   + +EA +++ EM  + + P  V+F  L
Sbjct: 255 MDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCL 305


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 135/280 (48%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I   CK   ++ A      M   G+ P VVTYN L+ G+C               +
Sbjct: 247 YSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQW----------K 296

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM    ++PDV +FSI++    +      +L     M +  + P + TYSS++
Sbjct: 297 QASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLI 356

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C     +++  LL EM+   + P   T++ +   +  +   + A  +   M E GL 
Sbjct: 357 HGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGL- 415

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN L+  +   ++MD  R++++ +   G  PD+ SY +LI G C+ ++  EA Q
Sbjct: 416 RPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQ 475

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            F EM  KGL P  +T  TL  GL Q+      + L KK+
Sbjct: 476 LFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKM 515



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 136/285 (47%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ L+   CK   +  A    G+MI+  +EP++VTY+ L++GVC+ +            +
Sbjct: 317 FSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSS----------LWK 366

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            +  + +EM  R I PDV +FSI + V+ +      +   +N M E+G+ P V TY+S++
Sbjct: 367 ESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLM 426

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   ++++A ++   MV  G  P   +YN   K Y   +  + A +L+ +M   GL 
Sbjct: 427 DGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGL- 485

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  ++  LI       R    +E++  +   G  PDL +Y+ L+ G C+     EA  
Sbjct: 486 TPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALA 545

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F  + +  L P  V  + L  G+ ++  L   + L   L  E +
Sbjct: 546 LFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEEL 590



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 127/260 (48%), Gaps = 17/260 (6%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T LI   C ++ + +    LG++ + G +P+++T+N L+NG+C           E  I  
Sbjct: 143 TILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLC----------IEGRIVE 192

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A +  D +  RG +P V + +++++   +  +   ++  +  M E    P V +YS ++ 
Sbjct: 193 AMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIID 252

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC    + +A +L   M   G+ P+  TYN              A  L+++M E  +  
Sbjct: 253 SLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNM-K 311

Query: 183 PNMHSYNILIGMFMALNRMDMVRE---IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           P++ +++IL+    AL +  +V E   ++  +    + PD+ +Y+ LIHG+C+   WKE+
Sbjct: 312 PDVVTFSILVD---ALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKES 368

Query: 240 CQYFVEMIEKGLLPQKVTFE 259
                EM+ + + P  VTF 
Sbjct: 369 STLLNEMLSRNIRPDVVTFS 388



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 137/286 (47%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T ++ G CKI +   A  ++ +M+E   EP VV+Y+++++ +C+           + + 
Sbjct: 212 HTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKN----------RLVN 261

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F  MR  GI P V +++ +++    + Q + +      M E  + P V T+S +V
Sbjct: 262 EAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILV 321

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G + +A  + G+M++  + P   TY+              +  L  +M    + 
Sbjct: 322 DALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNI- 380

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +++I + +F     +   + I N +   GL P++ +Y  L+ G C   +  EA +
Sbjct: 381 RPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARK 440

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            F  M+ KG  P  +++  L +G  +S+ +   ++L  ++  + +T
Sbjct: 441 VFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLT 486



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 123/263 (46%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G C   RI  A   L  ++ RG +P V T+ +++NG+C+      +  + K   
Sbjct: 177 FNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMK--- 233

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                  +M     EP+V S+SI++    +      ++D    M+  GI PTV TY+S++
Sbjct: 234 -------KMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLI 286

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C+ G+ + A  L  EM+   + P   T++              A+ ++ +M +  + 
Sbjct: 287 YGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAM- 345

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ LI      +       + N++    + PD+ ++++ +   C+K    EA  
Sbjct: 346 EPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQS 405

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
               MIE+GL P  VT+ +L  G
Sbjct: 406 IINLMIERGLRPNVVTYNSLMDG 428



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 113/253 (44%), Gaps = 11/253 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           +  D A  +  +M+     P +  +N LL  + R           K   +   ++ +M  
Sbjct: 83  SNFDDALAYFNQMVHMNPFPCITQFNQLLAALVRM----------KHYDSVVSIYRKMEF 132

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
            G+   V + +I+++     H   L    L  + + G  P++ T+++++  LC  GRI +
Sbjct: 133 FGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVE 192

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A E L  ++  G  P+  T+             + A+   ++M E   C P + SY+I+I
Sbjct: 193 AMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELD-CEPEVVSYSIII 251

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                   ++   +++  ++  G+ P + +Y  LI+G+C   +WK+A   F EM+E  + 
Sbjct: 252 DSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMK 311

Query: 253 PQKVTFETLYRGL 265
           P  VTF  L   L
Sbjct: 312 PDVVTFSILVDAL 324


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 146/301 (48%), Gaps = 26/301 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           +  L++  CK ++I+ A+   GE+ +RG+ P VV++N L+NG C+  +L    R      
Sbjct: 228 FNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMM 287

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  + +A K+F EM  RG+ P+  +F+ +++ +    +  
Sbjct: 288 ENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRAD 347

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           L ++    M  KG+ P V TY++++  LC  G + +A++L+ EM + G+ P   TY    
Sbjct: 348 LGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLI 407

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                  D   A+++ ++M ++G+ + N+ ++  LI  F    ++        ++  +G+
Sbjct: 408 DGCCKEGDLESALEIRKEMVKEGIELDNV-AFTALISGFCREGQVIEAERTLREMLEAGI 466

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD  +YTM+IHG C+K   K   +   EM   G +P  VT+  L  GL +   ++    
Sbjct: 467 KPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANM 526

Query: 277 L 277
           L
Sbjct: 527 L 527



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 136/276 (49%), Gaps = 11/276 (3%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           K+N    A  F  E+++ G  P+V  +NVL++ +C+          E  I  A+ +F E+
Sbjct: 202 KLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCK----------EHKINEAQLLFGEI 251

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
             RG+ P V SF+ +++ Y ++           FM E  + P V TYS ++  LC  G++
Sbjct: 252 GKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQL 311

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           +DA +L  EM   G+ P+  T+      +     A+  M++Y+QM   G+  P++ +YN 
Sbjct: 312 DDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGV-KPDVITYNT 370

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           LI     +  +   +++  ++   GL PD  +YTMLI G C++   + A +   EM+++G
Sbjct: 371 LINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEG 430

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +    V F  L  G  +   +    R  +++ E  I
Sbjct: 431 IELDNVAFTALISGFCREGQVIEAERTLREMLEAGI 466



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 119/231 (51%), Gaps = 11/231 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G C   R D+      +M+ +GV+P+V+TYN L+NG+C+   L          R
Sbjct: 333 FTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDL----------R 382

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+K+  EM  RG++PD  ++++++    +    + +L+    M ++GI      +++++
Sbjct: 383 EAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALI 442

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++ +AE  L EM+  G+ P   TY      +  + D     KL ++M+ DG  
Sbjct: 443 SGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGH- 501

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
           VP + +YN+L+       +M     + + +   G+ PD  +Y +L+ G C+
Sbjct: 502 VPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLEGHCK 552



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 102/220 (46%), Gaps = 35/220 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK--- 58
           Y +LI G CK+  +  A++ + EM +RG++P+  TY +L++G C+   L  +    K   
Sbjct: 368 YNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMV 427

Query: 59  ----------------------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  +  AE+   EM   GI+PD  ++++V+H + +    +
Sbjct: 428 KEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVK 487

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
                L  M+  G  P V TY+ ++  LC  G++++A  LL  M+  GV P   TYN   
Sbjct: 488 TGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILL 547

Query: 157 K---EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
           +   ++  R+D +      +   E GL V +  SY  LIG
Sbjct: 548 EGHCKHGNREDFD------KLQSEKGL-VQDYGSYTSLIG 580



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 18/191 (9%)

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN------ 166
           ++ +Y ++   LC+   + +A+ LL  +V      SA +      E RG   +N      
Sbjct: 102 SIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSASSVFTSVLEARGTHQSNLVFSVL 161

Query: 167 -----------GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                       A++ +R +++  L +P  HS   L    M LN        + ++   G
Sbjct: 162 MNAYTDSGYFSDAIQCFRLVRKHNLQIP-FHSCGYLFDRLMKLNLTSPAWAFYEEILDCG 220

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
             PD+  + +L+H LC++ K  EA   F E+ ++GL P  V+F TL  G  +S  L    
Sbjct: 221 YPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGF 280

Query: 276 RLKKKLDEESI 286
           RLK+ + E  +
Sbjct: 281 RLKRFMMENRV 291


>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
 gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 647

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 141/296 (47%), Gaps = 23/296 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR----------ASLH 51
           Y  L+   C+ NR+  A + L EM  +G  P+ VTY  +++ +C+           A++ 
Sbjct: 166 YNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAMP 225

Query: 52  PSERFEKTIRNA-------EKVFD---EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK 101
           P       I  A       ++VF    +M  RG++P+V +++ ++  + +A + +++   
Sbjct: 226 PVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAI 285

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
           L  M   G  P V T++++V+ L   GR+ DA ++   MV  G  PS  +YN   +    
Sbjct: 286 LARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCS 345

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
             D  GA  +   M++ G C PN+ +Y+ LI  F     +     IWND+  SG  P++ 
Sbjct: 346 VGDLKGASSILNSMEQHG-CFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVV 404

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            YT ++   C+K  + +A     +M+ +   P  VTF TL R L   D  R  R L
Sbjct: 405 VYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSL--CDCRRVGRAL 458



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 129/286 (45%), Gaps = 28/286 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH---------- 51
           YT+++  +CK   + MA   L  M+  G  PNVVT+  L+ G+     +H          
Sbjct: 266 YTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMV 325

Query: 52  -----PSE-RFEKTIRN---------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                PS   +   IR          A  + + M   G  P+V ++S ++  +S+A    
Sbjct: 326 AEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLG 385

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++   N M   G  P V  Y+++V   C       A+ L+ +M+     P+  T+N   
Sbjct: 386 GAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLI 445

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSG 215
           +     +    A+ ++ +M+  G CVPN  +YN LI G+F   N  D +  +  +++  G
Sbjct: 446 RSLCDCRRVGRALGVFHEMRRHG-CVPNGRTYNELIHGLFREGNCGDALHMV-TEMQSHG 503

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   L +Y  ++ GLC+ +  +EA  +  +MI +G+ P   TF  +
Sbjct: 504 IELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAI 549



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 125/301 (41%), Gaps = 44/301 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G C +  +  A   L  M + G  PNV TY+ L++G  +   L           
Sbjct: 336 YNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLG---------- 385

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++++M   G +P+V  ++ ++ V+ +      +   ++ M  +   P   T+++++
Sbjct: 386 GAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLI 445

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
           + LC C R+  A  +  EM R+G  P+  TYN          +   A+ +  +M+     
Sbjct: 446 RSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIE 505

Query: 178 ----------DGLCV--------------------PNMHSYNILIGMFMALNRMDMVREI 207
                      GLC                     PN  +++ +I  +     + M   +
Sbjct: 506 LSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWM 565

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +       ++  YT+L+  LC + K  +A  Y ++M+ +G+ P  VT+  L RG+ +
Sbjct: 566 LGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVRGVFR 625

Query: 268 S 268
           +
Sbjct: 626 N 626



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 104/252 (41%), Gaps = 57/252 (22%)

Query: 28  RGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 87
           R  EP +  YN L++ + R          E  +     V+D MR  G+ P+V ++++++ 
Sbjct: 124 RPTEPRL--YNHLIDALLR----------ENMVGAVVLVYDNMRKDGVHPNVFTYNLLVR 171

Query: 88  VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
              + ++   +   L+ M  KG  P   TY+++V  LC   R+++A E+L  M      P
Sbjct: 172 ALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAMP-----P 226

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
            A +YN               + L R+                         RM  V  +
Sbjct: 227 VAASYNAIV------------LALCREF------------------------RMQEVFSV 250

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            +D+ G GL P++ +YT ++   C+  + + AC     M+  G  P  VTF  L RGL  
Sbjct: 251 VSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFD 310

Query: 268 S----DMLRTWR 275
                D L  WR
Sbjct: 311 DGRVHDALDMWR 322



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 9/216 (4%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC--PTVA-T 116
           +   +    EMR+RG+     +    +  ++RA  P  +L           C  PT    
Sbjct: 71  VDGVQLALQEMRLRGVPCTEGALVAAVGAFARAGAPDRALKTFYRAVHDLGCARPTEPRL 130

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+ ++  L     +     +   M ++GV P+  TYN   +          A K+  +M 
Sbjct: 131 YNHLIDALLRENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMA 190

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G C P+  +Y  ++ +   L+R+D   E+      + + P   SY  ++  LC + + 
Sbjct: 191 RKG-CPPDDVTYATIVSVLCKLDRLDEATEVL-----AAMPPVAASYNAIVLALCREFRM 244

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
           +E      +M+ +GL P  +T+ T+     ++  LR
Sbjct: 245 QEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELR 280



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 2/158 (1%)

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGV-CPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            + + V+ L + G ++  +  L EM   GV C             R           YR 
Sbjct: 57  AHEAAVRRLAAAGDVDGVQLALQEMRLRGVPCTEGALVAAVGAFARAGAPDRALKTFYRA 116

Query: 175 MKEDGLCVPN-MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           + + G   P     YN LI   +  N +  V  ++++++  G+ P++ +Y +L+  LC+ 
Sbjct: 117 VHDLGCARPTEPRLYNHLIDALLRENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQN 176

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
            +   A +   EM  KG  P  VT+ T+   L + D L
Sbjct: 177 NRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRL 214



 Score = 37.7 bits (86), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR-ASLHPSERFEKT 59
           +YT L+   C  +++  A  +L +M+  G+ PN VT+NVL+ GV R    + PS+  +  
Sbjct: 580 VYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVRGVFRNLGCIEPSDFIQHI 639

Query: 60  IRN 62
             N
Sbjct: 640 TMN 642


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 135/300 (45%), Gaps = 32/300 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+G CK  ++D A   L EM +RG+ P V  +N ++ G+C+      +  + KT+ 
Sbjct: 33  YGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVA 92

Query: 62  N-------------------------AEKVFDEMRVRG-IEPDVTSFSIVLHVYSRAHQP 95
                                     A ++F+ M       P+V +++ V++   +  + 
Sbjct: 93  GTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKL 152

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +++ L+ M E G CP V TYS +V+ LC  GR +    LL EM R G  P    YN  
Sbjct: 153 DRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTL 212

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                  +  + A++L + M   G C P + +YN L+ +F    ++D    +   +   G
Sbjct: 213 LNGLCKSRRLDEALELVQLMIRSG-CYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERG 271

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
             PD+ +Y  +I GLC   +  +A     +M+    +P  +T+ T+  GL      + WR
Sbjct: 272 CPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLC-----KDWR 326



 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 128/270 (47%), Gaps = 17/270 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ G CK  R D     L EM  RG +P+V+ YN LLNG+C+      S R ++ + 
Sbjct: 174 YSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCK------SRRLDEAL- 226

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++   M   G  P V +++ ++ ++ R+ Q   +   +  M E+G  P V  Y++V+
Sbjct: 227 ---ELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVI 283

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF----KEYRGRKD--ANGAMKLYRQM 175
             LC   R++DA+ LL +MV     P   TY+       K++R   D     A ++   M
Sbjct: 284 AGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMM 343

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           K+ G C PN  +Y ++I       +      +   +  S + PDL S++M+I  LC+   
Sbjct: 344 KQTG-CPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHD 402

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
              A + F  M E+   P  V +  L  GL
Sbjct: 403 LDAAYKIFGMMSERECKPNPVAYAALIDGL 432



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 131/273 (47%), Gaps = 17/273 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G CK  ++D A   L  M E G  PNV+TY+VL+ G+C+      + R +K   
Sbjct: 139 YTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCK------AGRTDKGF- 191

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +  EM  RG +PDV  ++ +L+   ++ +   +L+ +  M   G  PTV TY+S++
Sbjct: 192 ---TLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLM 248

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C   +++ A  L+  M   G  P    YN            + A  L +QM     C
Sbjct: 249 ELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVA-ARC 307

Query: 182 VPNMHSYNILIGMFMALNRMDM------VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           VP++ +Y+ +I       R+D         EI   +K +G  P+  +Y ++I GLC  +K
Sbjct: 308 VPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARK 367

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            ++A      MI+  ++P   +F  +   L +S
Sbjct: 368 SQQALALLRRMIDSEVVPDLSSFSMVIGSLCKS 400



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 122/270 (45%), Gaps = 18/270 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+  +C+  ++D A R +  M ERG  P+V+ YN ++ G+CR A L  ++   K + 
Sbjct: 244 YNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMV 303

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP------QLSLDKLNFMKEKGICPTVA 115
            A  V          PDV ++S ++    +  +       + + + L  MK+ G  P   
Sbjct: 304 AARCV----------PDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAG 353

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           TY+ V++ LC   + + A  LL  M+ + V P   +++          D + A K++  M
Sbjct: 354 TYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMM 413

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            E   C PN  +Y  LI        +D    ++ ++      P + +Y  ++ GLC   +
Sbjct: 414 SERE-CKPNPVAYAALIDGLSKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDGLCGVGR 471

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            +EA +    MI K   P   ++  L RGL
Sbjct: 472 IEEAVRMVEGMIHKECFPDGASYGALIRGL 501



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 124/271 (45%), Gaps = 18/271 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY +L+ G CK  R+D A   +  MI  G  P VVTYN L+   CR           K +
Sbjct: 208 MYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCR----------SKQV 257

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++   M  RG  PDV +++ V+    R  +   +   L  M      P V TYS++
Sbjct: 258 DRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTI 317

Query: 121 VKCLCSCGRI------EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
           +  LC   R+      E A E+L  M + G  P+A TY    +     + +  A+ L R+
Sbjct: 318 IDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRR 377

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M  D   VP++ S++++IG     + +D   +I+  +      P+  +Y  LI GL +  
Sbjct: 378 MI-DSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGG 436

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +  +A + F  M+E    P   T+ ++  GL
Sbjct: 437 EVDKAVRVFELMVES-FRPGVATYNSVLDGL 466



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 127/282 (45%), Gaps = 6/282 (2%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G C+  R+D A+  L +M+     P+V+TY+ +++G+C+   +    + E    
Sbjct: 279 YNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEA--- 335

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ + M+  G  P+  ++++V+    RA + Q +L  L  M +  + P ++++S V+
Sbjct: 336 -ACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVI 394

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    ++ A ++ G M      P+   Y           + + A++++  M E    
Sbjct: 395 GSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFR- 453

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +YN ++     + R++    +   +      PD  SY  LI GLC     +EA +
Sbjct: 454 -PGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYE 512

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            F  +  KG   +   +  L   L +   L     +  KL E
Sbjct: 513 LFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIE 554



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 113/253 (44%), Gaps = 12/253 (4%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
           PN  TY  L++G+C+   L            A ++ DEMR RGI P V   + V+    +
Sbjct: 28  PNEFTYGSLIHGLCKAGKLD----------QAYELLDEMRDRGIPPGVAVHNGVIKGLCK 77

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC-PSAE 150
           A +   +L     +      P + T++ +V  L   GR+E+A ++   M  +  C P+  
Sbjct: 78  AGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVV 137

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           TY             + A++L   M E G C PN+ +Y++L+       R D    +  +
Sbjct: 138 TYTTVINGLCKDGKLDRAIELLDLMNETG-CCPNVITYSVLVEGLCKAGRTDKGFTLLQE 196

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           +   G  PD+  Y  L++GLC+ ++  EA +    MI  G  P  VT+ +L     +S  
Sbjct: 197 MTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQ 256

Query: 271 LRTWRRLKKKLDE 283
           +    RL + + E
Sbjct: 257 VDRAFRLIQVMSE 269



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 11/188 (5%)

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
            L++  RA Q       +   +E+   P   TY S++  LC  G+++ A ELL EM   G
Sbjct: 4   ALNLLVRAGQHG---QAVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRG 60

Query: 145 VCPSAETYNCFFKEY--RGR-KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
           + P    +N   K     GR  DA G  K     K    C P++ ++NIL+   +   R+
Sbjct: 61  IPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTK----CTPDIITFNILVDALVKSGRV 116

Query: 202 DMVREIWNDVKGSGLG-PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           +   +I+  +  S    P++ +YT +I+GLC+  K   A +    M E G  P  +T+  
Sbjct: 117 EEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSV 176

Query: 261 LYRGLIQS 268
           L  GL ++
Sbjct: 177 LVEGLCKA 184



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 107/249 (42%), Gaps = 47/249 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G C+  +   A   L  MI+  V P++ ++++++  +C+   L           
Sbjct: 355 YAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDA--------- 405

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F  M  R  +P+  +++ ++   S+  +   ++     M E    P VATY+SV+
Sbjct: 406 -AYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES-FRPGVATYNSVL 463

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GRIE+A  ++  M+               KE                      C
Sbjct: 464 DGLCGVGRIEEAVRMVEGMIH--------------KE----------------------C 487

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  SY  LI     ++ ++   E++  V+  G   ++  Y +L++ LC+K++  +A  
Sbjct: 488 FPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHG 547

Query: 242 YFVEMIEKG 250
              ++IE G
Sbjct: 548 VANKLIEAG 556


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 140/321 (43%), Gaps = 46/321 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y++LI G+C    +D  +    EM+E+G+ PNVV Y+ L+NG C++             
Sbjct: 82  VYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKG----------LW 131

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R A  V   M  RGI+PDV +++ ++    +  + + +LD  + M EKG  P+  TY+ +
Sbjct: 132 REATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVL 191

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED-- 178
           +  LC  G I DA ++   M+  G      +YN            + AMKL+  + ED  
Sbjct: 192 INGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGN 251

Query: 179 --------------GLC--------------------VPNMHSYNILIGMFMALNRMDMV 204
                         GLC                      N+ + +ILIG ++    +D  
Sbjct: 252 YVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKA 311

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            E+W  V   GL P   +Y+++I G C+      A   F  M   GL P    + TL   
Sbjct: 312 MELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMAS 371

Query: 265 LIQSDMLRTWRRLKKKLDEES 285
           L +   L   RRL +++ E +
Sbjct: 372 LCKESSLEQARRLFQEMKESN 392



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 149/288 (51%), Gaps = 13/288 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I G CK  R   A      M E+G EP+ VTYNVL+NG+C+          E  I 
Sbjct: 153 YTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCK----------EGCIG 202

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG--ICPTVATYSS 119
           +A K+F+ M  +G   +V S++ ++       +   ++   + + E G  + P V T+++
Sbjct: 203 DAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNT 262

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           V++ LC  GR++ A E+   M+  G   +  T +    EY      + AM+L++++ + G
Sbjct: 263 VIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLG 322

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           L VP+  +Y+++I  F  ++ ++  + +++ +K SGL P L  Y  L+  LC++   ++A
Sbjct: 323 L-VPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQA 381

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            + F EM E    P  ++F  +  G +++  + + + L   + +  +T
Sbjct: 382 RRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLT 429



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 139/284 (48%), Gaps = 17/284 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+ G CK  R++ A R LGEM  +G+E +VV Y+ L++G C +  L           
Sbjct: 48  YCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLD---------- 97

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             + +FDEM  +GI P+V  +S +++ + +    + +   L+ M E+GI P V TY+ ++
Sbjct: 98  RGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMI 157

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR   A +L   M   G  PS  TYN              A K++  M E G  
Sbjct: 158 GGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKR 217

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDV--KGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  + SYN LI       ++D   ++++ +   G+ + PD+ ++  +I GLC++ +  +A
Sbjct: 218 L-EVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKA 276

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDM----LRTWRRLKK 279
            + +  MIE+G      T   L    I+S +    +  W+R+ K
Sbjct: 277 VEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHK 320



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 142/295 (48%), Gaps = 13/295 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG--VEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           Y +LI G C   ++D A +    ++E G  VEP+V+T+N ++ G+C+        R +K 
Sbjct: 223 YNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEG------RLDKA 276

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +    +++D M  RG   ++ +  I++  Y ++     +++    + + G+ P+  TYS 
Sbjct: 277 V----EIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSV 332

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++   C    +  A+ L   M  +G+ P+   YN              A +L+++MKE  
Sbjct: 333 MIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESN 392

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C P+  S+NI+I   +    +   +E+ ND++  GL PD  +Y+  I+ L +  + +EA
Sbjct: 393 -CEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEA 451

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
              F  MI  G+ P    +++L +G   +D +     L +++ +  +    E  N
Sbjct: 452 KGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVILDLEITN 506



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 135/297 (45%), Gaps = 22/297 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK  R++ A   L EM     EPN  TY +L++G+C+          E  + 
Sbjct: 13  YNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCK----------EGRVE 62

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++  EM+ +G+E DV  +S ++  +             + M EKGI P V  YS ++
Sbjct: 63  EAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLI 122

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF----KEYRGRKDANGAMKLYRQMKE 177
              C  G   +A  +L  M   G+ P   TY C      K+ R RK    A+ L+  M E
Sbjct: 123 NGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARK----ALDLFDLMTE 178

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G   P+  +YN+LI        +    +I+  +   G   ++ SY  LI GLC   K  
Sbjct: 179 KGE-EPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLD 237

Query: 238 EACQYFVEMIEKG--LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEF 292
           EA + F  ++E G  + P  +TF T+ +GL +   L     +   + E   +FG+ F
Sbjct: 238 EAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERG-SFGNLF 293



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 129/271 (47%), Gaps = 18/271 (6%)

Query: 30  VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89
           + P++V+YN ++NG+C+          EK +  A  +  EM     EP+  ++ I++   
Sbjct: 6   ILPDIVSYNTIINGLCK----------EKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGL 55

Query: 90  SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
            +  + + ++  L  MK KG+   V  YS+++   CS G ++  + L  EM+  G+ P+ 
Sbjct: 56  CKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNV 115

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
             Y+C    +  +     A  +   M E G+  P++++Y  +IG      R     ++++
Sbjct: 116 VVYSCLINGFCKKGLWREATAVLHTMTERGI-QPDVYTYTCMIGGLCKDGRARKALDLFD 174

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            +   G  P   +Y +LI+GLC++    +A + F  M+EKG   + V++ TL  GL  + 
Sbjct: 175 LMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNG 234

Query: 270 MLRTWRRLKKKLDEES-------ITFGSEFQ 293
            L    +L   L E+        ITF +  Q
Sbjct: 235 KLDEAMKLFSSLLEDGNYVEPDVITFNTVIQ 265



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 95/196 (48%), Gaps = 1/196 (0%)

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           M+   I PD+ S++ +++   +  + + ++D L  M+     P   TY  ++  LC  GR
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           +E+A  LLGEM R G+      Y+     +  +   +    L+ +M E G+  PN+  Y+
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGIS-PNVVVYS 119

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            LI  F           + + +   G+ PD+ +YT +I GLC+  + ++A   F  M EK
Sbjct: 120 CLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEK 179

Query: 250 GLLPQKVTFETLYRGL 265
           G  P  VT+  L  GL
Sbjct: 180 GEEPSTVTYNVLINGL 195



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 25/161 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSE------- 54
           Y +L+   CK + ++ A R   EM E   EP+ +++N++++G  +   +H ++       
Sbjct: 365 YNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQ 424

Query: 55  ----------------RFEK--TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                           R  K   +  A+  FD M   GI PD   +  ++  +    + +
Sbjct: 425 QMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIE 484

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
             ++ L  M + G+   +   +S++  LC+        ELL
Sbjct: 485 EVINLLRQMADMGVILDLEITNSILTFLCNSAEHLHVMELL 525


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 130/268 (48%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+  +CK  R+  A+  L  M+++G++P++VTYN L++G C              + 
Sbjct: 283 FNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYC----------LVNEVN 332

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ + + M  RG+   V S++IV++ + +      ++     M  K I P V TY+S++
Sbjct: 333 MAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLI 392

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GRI  A EL+  M   G  P   TY+            + A+ L  ++K+ G+ 
Sbjct: 393 DGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGI- 451

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PNM++Y ILI       R++  R I+ D+   G    +++YT++I G C    + EA  
Sbjct: 452 RPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALS 511

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              +M +   +P  +T+E +   L   D
Sbjct: 512 LLSKMKDNSCIPDAITYEIIICSLFDKD 539



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 138/281 (49%), Gaps = 11/281 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY+++I   CK   ++ A     EM+ R +  N+VTY+ L++G C    L          
Sbjct: 212 MYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKL---------- 261

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           ++A  +F++M    I PDV +F+I++  + +  + + + + L  M ++GI P + TY+S+
Sbjct: 262 KDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSL 321

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C    +  A+ +L  M   GV  +  +YN     +   K  + AMKL+++M    +
Sbjct: 322 MDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQI 381

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+ +YN LI       R+    E+ + +   G  PD+ +Y+ ++  LC+     +A 
Sbjct: 382 -FPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAI 440

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
              +++ ++G+ P   T+  L  GL +   L   R + + L
Sbjct: 441 ALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDL 481



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 137/285 (48%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK+     A   L  +  + V+ +VV Y+ +++ +C+          +K + 
Sbjct: 178 YGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCK----------DKNVN 227

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  ++ EM  R I  ++ ++S ++  +    + + ++   N M  + I P V T++ +V
Sbjct: 228 DAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILV 287

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR+++A+  L  M++ G+ P   TYN     Y    + N A  +   M   G+ 
Sbjct: 288 DAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGV- 346

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              + SYNI+I  F  +  +D   +++ ++    + P++ +Y  LI GLC+  +   A +
Sbjct: 347 TATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALE 406

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
               M ++G  P  +T+ ++   L ++ ++     L  KL ++ I
Sbjct: 407 LIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGI 451



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 109/215 (50%), Gaps = 11/215 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G+CKI  +D A +   EM  + + PNV+TYN L++G+C+             I 
Sbjct: 353 YNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGR----------IS 402

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D M  RG +PD+ ++S +L    + H    ++  L  +K++GI P + TY+ ++
Sbjct: 403 YALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILI 462

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+EDA  +  +++  G   +  TY    + +      + A+ L  +MK++  C
Sbjct: 463 DGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNS-C 521

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           +P+  +Y I+I      +  D   ++  ++   GL
Sbjct: 522 IPDAITYEIIICSLFDKDENDKAEKLLREMITRGL 556



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 135/307 (43%), Gaps = 56/307 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI  +C++  I  A   L ++++ G EP+ +T N  + G C +  +H +  F     
Sbjct: 108 FNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFH---- 163

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 D++   G   D  S+  +++   +  + + +L+ L  +  K +   V  YS+++
Sbjct: 164 ------DKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTII 217

Query: 122 KCLCSCGRIEDAEELLGEMVR--------------NGVC--------------------- 146
             +C    + DA +L  EMV               +G C                     
Sbjct: 218 DSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENIN 277

Query: 147 PSAETYN----CFFKEYRGRKDANG-AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
           P   T+N     F KE R ++  NG AM + + +K      P++ +YN L+  +  +N +
Sbjct: 278 PDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIK------PDIVTYNSLMDGYCLVNEV 331

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +M + I N +   G+   + SY ++I+G C+ +   +A + F EM  K + P  +T+ +L
Sbjct: 332 NMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSL 391

Query: 262 YRGLIQS 268
             GL +S
Sbjct: 392 IDGLCKS 398



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 121/277 (43%), Gaps = 39/277 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S++   CK + +D A   L ++ ++G+ PN+ TY +L++G+C+   L           
Sbjct: 423 YSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRL----------E 472

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +F+++ V+G    V ++++++  +        +L  L+ MK+    P   TY  ++
Sbjct: 473 DARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIII 532

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY----------------RGRKDA 165
             L      + AE+LL EM+  G+  S   Y  +   +                  ++  
Sbjct: 533 CSLFDKDENDKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDSLQCTSSQESG 592

Query: 166 NGAMKLYRQMKEDGLCV---PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS 222
           N A  L  ++  D  CV    NM   ++     +  +  D  ++        G   D+++
Sbjct: 593 NWAKLLLERIYCD--CVLTKSNMRDKDVECPSVIIYSTCDWSKQ--------GYILDVNT 642

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           YT++I G C    + E+     +M   G +P  VT++
Sbjct: 643 YTVMIQGFCSHGLFDESLALLSKMEVNGCIPDAVTYD 679



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 1/227 (0%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           + +A  +F+ +  +   P    F  +L    ++      L     M+ +GI P    ++ 
Sbjct: 51  VVDAVSLFNCLLRQNPTPPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNI 110

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++ C C  G I  A  +L ++++ G  P   T N F K +  +   + A+  + ++   G
Sbjct: 111 LINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALG 170

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
             +  + SY  LI     +       E+   V G  +  D+  Y+ +I  +C+ +   +A
Sbjct: 171 FHLDQV-SYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDA 229

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              + EM+ + +    VT+  L  G      L+    L  K+  E+I
Sbjct: 230 FDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENI 276


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 143/289 (49%), Gaps = 26/289 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR-------------- 46
           +YT+LI G CK   + +A+    +M   G+ PN  TY+VL+NG  +              
Sbjct: 195 IYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENM 254

Query: 47  -RASLHPSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
            R+ + P+             +  +  A KVF EMR +GI   V +++I++    R  + 
Sbjct: 255 NRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKF 314

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             ++  ++ + + G+ P + TY+ ++   C  G+++ A  L  ++  +G+ P+  TYN  
Sbjct: 315 GEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTL 374

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y   ++  GA+ L ++M+E  +    + +Y ILI  F  LN  D   E+ + ++ SG
Sbjct: 375 IAGYSKVENLAGALDLVKEMEERCIARSKV-TYTILIDAFARLNYTDKACEMHSLMEKSG 433

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           L PD+ +Y++LIHG C     KEA + F  + E  L P  V + T+  G
Sbjct: 434 LVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHG 482



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 124/262 (47%), Gaps = 11/262 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G C+  +   A + + ++ + G+ PN+VTYN+L+NG C    +           
Sbjct: 301 YNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKM----------D 350

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F++++  G+ P + +++ ++  YS+      +LD +  M+E+ I  +  TY+ ++
Sbjct: 351 TAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILI 410

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                    + A E+   M ++G+ P   TY+          +   A K ++ + E  L 
Sbjct: 411 DAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHL- 469

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN   YN +I  +           + N++  SG+ P++ S+   +  LC  +KWKEA  
Sbjct: 470 QPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAEL 529

Query: 242 YFVEMIEKGLLPQKVTFETLYR 263
              +MI  GL P    ++ +++
Sbjct: 530 LLGQMINSGLKPSVSLYKMVHK 551



 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 123/283 (43%), Gaps = 46/283 (16%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +I G C+        R L  + E G+ PNVV Y  L++G C+             +  A+
Sbjct: 164 MITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNGD----------VMLAK 213

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +F +M   G+ P+  ++S++++                F K+                 
Sbjct: 214 NLFCKMDRLGLVPNQHTYSVLMN---------------GFFKQ----------------- 241

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
              G   +  ++   M R+G+ P+A  YNC   EY      + A K++ +M+E G+    
Sbjct: 242 ---GLQREGFQMYENMNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGV 298

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           M +YNILIG      +     ++ + V   GL P++ +Y +LI+G C+  K   A + F 
Sbjct: 299 M-TYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFN 357

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           ++   GL P  VT+ TL  G  + + L     L K+++E  I 
Sbjct: 358 QLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIA 400



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 136/291 (46%), Gaps = 20/291 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +++  +   +  D A  FL  MI  G  P   T+N LL  + R      S  F+K  
Sbjct: 91  LYDAIVNAYVHSHSTDQALTFLHHMIHEGHAPLSNTFNNLLCLLIR------SNYFDK-- 142

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F+ ++ + +  +  SF I++     A         L  ++E G+ P V  Y+++
Sbjct: 143 --AWWIFNVLKSK-VVLNAYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTL 199

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY----NCFFKEYRGRKDANGAMKLYRQMK 176
           +   C  G +  A+ L  +M R G+ P+  TY    N FFK+   R+      ++Y  M 
Sbjct: 200 IDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQRE----GFQMYENMN 255

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G+ VPN ++YN LI  +     +D   +++ +++  G+   + +Y +LI GLC  +K+
Sbjct: 256 RSGI-VPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKF 314

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            EA +   ++ + GL P  VT+  L  G      + T  RL  +L    ++
Sbjct: 315 GEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLS 365



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I+G+CK      A R L EM+  G+ PNV ++   +  +CR          ++  
Sbjct: 475 IYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCR----------DEKW 524

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIV 85
           + AE +  +M   G++P V+ + +V
Sbjct: 525 KEAELLLGQMINSGLKPSVSLYKMV 549


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 137/288 (47%), Gaps = 26/288 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS----ERFE 57
           Y +LI G+C   +++   R   EM +RG++P++ TYN LL G+C    L  +    + F+
Sbjct: 503 YNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFK 562

Query: 58  KT---------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            +                     I + E +F+E+  + +E +   ++I++  + +     
Sbjct: 563 ASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVA 622

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L  L  MK KGI P  ATYSS++  +C+ G +EDA+ L+ EM + G  P+   Y    
Sbjct: 623 AALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALI 682

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y      + A   + +M    +  PN  +Y ++I  +  L  M+    +   +K SG+
Sbjct: 683 GGYCKLGQMDTAESTWLEMISFNI-HPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGI 741

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            PD+ +Y +L +G C+      A +   +M  +GL   ++T+ TL  G
Sbjct: 742 VPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 789



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 134/284 (47%), Gaps = 11/284 (3%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +LI+G C   ++  A R + EM+ERG+  + +TYN L+ G C           E  +   
Sbjct: 470 ALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCN----------EGKVEGC 519

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            ++ +EM  RGI+PD+ +++ +L       +   ++   +  K  G+   + TY  +++ 
Sbjct: 520 FRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEG 579

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C   RIED E L  E++   +  ++  YN   K +    +   A++L   MK  G+ +P
Sbjct: 580 YCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGI-LP 638

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N  +Y+ LI     +  ++  + + ++++  G  P++  YT LI G C+  +   A   +
Sbjct: 639 NCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTW 698

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +EMI   + P K T+  +  G  +   +     L  K+ E  I 
Sbjct: 699 LEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIV 742



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/345 (20%), Positives = 144/345 (41%), Gaps = 61/345 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           Y +LI G  K+N  D     L EMI  G  PNVV +N L++G C+  ++  + + +    
Sbjct: 293 YGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMI 352

Query: 60  -----------------------IRNAEKVFDEMRVRG--IEPDV--------------- 79
                                  I +AE   +E+   G  I PD                
Sbjct: 353 SKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYH 412

Query: 80  TSFSIVLHVYSRAHQP-----------------QLSLDKLNF-MKEKGICPTVATYSSVV 121
           ++F     + SR  +P                  L   +L F + EKG   +  T ++++
Sbjct: 413 SAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALI 472

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++ +A  ++ EM+  G+     TYN     +       G  +L  +M + G+ 
Sbjct: 473 HGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGI- 531

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++++YN L+     + ++D   ++W++ K SGL  ++ +Y +++ G C+  + ++   
Sbjct: 532 QPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVEN 591

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F E++ K +    + +  + +   Q+  +    +L + +  + I
Sbjct: 592 LFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGI 636



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 136/316 (43%), Gaps = 38/316 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           +T++I   CK  +++ A     +M + G+ PNVVTYN ++NG+C+   L           
Sbjct: 223 FTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMT 282

Query: 51  ----HPSERFEKTIRNA----------EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                P+ +    + N             + DEM   G  P+V  F+ ++  Y +    +
Sbjct: 283 VKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIE 342

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   + M  K I PT  T  S+++  C   +IE AE  L E++ +G+  S    NC+ 
Sbjct: 343 GALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGL--SIHPDNCYS 400

Query: 157 ------KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
                 K++R     + A +  + M        ++    ++ G+      ++   E+W  
Sbjct: 401 VVHWLCKKFR----YHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLE-ATELWFR 455

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           +   G      +   LIHGLC   K  EA +   EM+E+GL   ++T+  L  G      
Sbjct: 456 LLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGK 515

Query: 271 LRTWRRLKKKLDEESI 286
           +    RL++++ +  I
Sbjct: 516 VEGCFRLREEMTKRGI 531



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 140/307 (45%), Gaps = 28/307 (9%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI--R 61
           SL+ G+CK ++I+ AE  L E++  G+  +      +++ +C++   H + RF K +  R
Sbjct: 365 SLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSR 424

Query: 62  N--AEKVFDEMRVRGIEPD----------------------VTSFSIVLHVYSRAHQPQL 97
           N     +   M V G+  D                      VTS +++  +      P+ 
Sbjct: 425 NFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEA 484

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           S   +  M E+G+     TY++++   C+ G++E    L  EM + G+ P   TYN   +
Sbjct: 485 S-RIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLR 543

Query: 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
                   + A+KL+ + K  GL + N+H+Y I++  +   NR++ V  ++N++    + 
Sbjct: 544 GLCNVGKLDDAIKLWDEFKASGL-ISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKME 602

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            +   Y ++I   C+      A Q    M  KG+LP   T+ +L  G+    ++   + L
Sbjct: 603 LNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHL 662

Query: 278 KKKLDEE 284
             ++ +E
Sbjct: 663 IDEMRKE 669



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 11/192 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  +I   C+   +  A + L  M  +G+ PN  TY+ L++GVC              +
Sbjct: 607 VYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIG----------LV 656

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A+ + DEMR  G  P+V  ++ ++  Y +  Q   +      M    I P   TY+ +
Sbjct: 657 EDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVM 716

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G +E A  LL +M  +G+ P   TYN     +    D + A K+  QM  +GL
Sbjct: 717 IDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGL 776

Query: 181 CVPNMHSYNILI 192
            V  + +Y  L+
Sbjct: 777 PVDEI-TYTTLV 787



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 47/247 (19%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           +  +G  P++ T N  L      +SL  +  FEK      +VF  M   G  PDV SF+ 
Sbjct: 177 LARKGTFPSLKTCNFXL------SSLVKANEFEKCC----EVFRVMS-EGACPDVFSFTN 225

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           V++   +  + + +++    M++ GI P V TY+ ++  LC  GR+++A EL  +M   G
Sbjct: 226 VINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKG 285

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           V P                                    N+ +Y  LI   + LN  D V
Sbjct: 286 VQP------------------------------------NLKTYGALINGLIKLNFFDKV 309

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             I +++ G+G  P++  +  LI G C+    + A +    MI K + P  VT  +L +G
Sbjct: 310 NHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQG 369

Query: 265 LIQSDML 271
             +SD +
Sbjct: 370 FCKSDQI 376



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 108/239 (45%), Gaps = 9/239 (3%)

Query: 53  SERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS---RAHQPQLSLDKLNFMKEKG 109
           SE+F   I NA  +F    V G      +F +++HVYS   R      ++D    +  KG
Sbjct: 124 SEKFHIEIANA--LFGLTSVVGRFEWTQAFDLLIHVYSTQFRNLGFSCAVDVFYLLARKG 181

Query: 110 ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY-NCFFKEYRGRKDANGA 168
             P++ T +  +  L      E   E+   ++  G CP   ++ N      +G K  N A
Sbjct: 182 TFPSLKTCNFXLSSLVKANEFEKCCEVF-RVMSEGACPDVFSFTNVINALCKGGKMEN-A 239

Query: 169 MKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228
           ++L+ +M++ G+  PN+ +YN +I       R+D   E+   +   G+ P+L +Y  LI+
Sbjct: 240 IELFMKMEKLGIS-PNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALIN 298

Query: 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           GL +   + +      EMI  G  P  V F  L  G  +   +    ++K  +  ++IT
Sbjct: 299 GLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNIT 357


>gi|224107983|ref|XP_002314677.1| predicted protein [Populus trichocarpa]
 gi|222863717|gb|EEF00848.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 139/278 (50%), Gaps = 11/278 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI+G+C+   +D A + + EM + G  P+  +Y   +   C+          +K  R
Sbjct: 206 FNILIHGYCEARMLDDARKTMEEMEKHGFRPDASSYTCFIKAYCK----------QKDFR 255

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N E + +EM  +G EPDV ++SI +    +A +   +L+    M +    P    +S+++
Sbjct: 256 NVEVILNEMGEKGCEPDVIAYSIYIRALGKARKINEALEVYEKMNKNSCKPDAKFFSTLI 315

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+ DA  +  +M  +GV     TYN         +  N A+KL  +M+ +  C
Sbjct: 316 YVLGRSGRLNDAWYVFEDMENHGVSRDLWTYNAMIYHACANRQGNSALKLLERMEVNS-C 374

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  L+ M   +  M +++ + + +  + +  DL +Y +LI  L E  K + AC 
Sbjct: 375 KPDLETYQPLLKMCCKMKDMKVLKFLLSHMFNNNVRIDLSTYALLIRELAESGKLEHACF 434

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
           +F + +  G++P+  T+E L + L Q++M+    +++K
Sbjct: 435 FFQDAVLNGIVPKDRTYEILLKELGQNNMVEMKGKIEK 472



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 104/234 (44%), Gaps = 12/234 (5%)

Query: 30  VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89
           V+ + V  N++++ + ++             ++A  VF E +   I  D  SF+I++H Y
Sbjct: 165 VKKDTVALNMVMHALAKQGG----------AKDAYSVFLEFK-DSITLDSHSFNILIHGY 213

Query: 90  SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
             A     +   +  M++ G  P  ++Y+  +K  C      + E +L EM   G  P  
Sbjct: 214 CEARMLDDARKTMEEMEKHGFRPDASSYTCFIKAYCKQKDFRNVEVILNEMGEKGCEPDV 273

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
             Y+ + +     +  N A+++Y +M ++  C P+   ++ LI +     R++    ++ 
Sbjct: 274 IAYSIYIRALGKARKINEALEVYEKMNKNS-CKPDAKFFSTLIYVLGRSGRLNDAWYVFE 332

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
           D++  G+  DL +Y  +I+  C  ++   A +    M      P   T++ L +
Sbjct: 333 DMENHGVSRDLWTYNAMIYHACANRQGNSALKLLERMEVNSCKPDLETYQPLLK 386



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 91/211 (43%), Gaps = 2/211 (0%)

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           + +V+ +  +  +  +    +N M E     + +T S VV+ L S G  +D  ++L  + 
Sbjct: 102 YDLVVDILGKCKKFGIMWKVVNEMNELNGQVSFSTMSIVVRRLASSGMYKDVIDVLRGLE 161

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
           +  V       N        +  A  A  ++ + K+      + HS+NILI  +     +
Sbjct: 162 KYRVKKDTVALNMVMHALAKQGGAKDAYSVFLEFKDS--ITLDSHSFNILIHGYCEARML 219

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           D  R+   +++  G  PD  SYT  I   C+++ ++       EM EKG  P  + +   
Sbjct: 220 DDARKTMEEMEKHGFRPDASSYTCFIKAYCKQKDFRNVEVILNEMGEKGCEPDVIAYSIY 279

Query: 262 YRGLIQSDMLRTWRRLKKKLDEESITFGSEF 292
            R L ++  +     + +K+++ S    ++F
Sbjct: 280 IRALGKARKINEALEVYEKMNKNSCKPDAKF 310


>gi|225425882|ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial [Vitis vinifera]
          Length = 496

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 134/279 (48%), Gaps = 12/279 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +   I+GWCK NR+D AE  + EM   G  P V++Y+ ++   CR+++           R
Sbjct: 218 FNIFIHGWCKANRVDEAEWTIQEMKGHGCRPCVISYSTIIQSYCRQSNF----------R 267

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++ D+M+ +G  P+V +++ ++   ++  Q + +L     M+  G  P    Y++++
Sbjct: 268 KVYELLDDMQAQGCAPNVVTYTTIMCSLTKVEQFEEALQIAERMRSVGCKPDTLFYNALI 327

Query: 122 KCLCSCGRIEDAEELLG-EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             L   G++ +A  +   EM + GV P+  TYN     +        A+ L R+++    
Sbjct: 328 HTLGRAGQLREAVRVFEVEMPKTGVPPNTSTYNSMIAMFCHHSQEQKALNLLREIENSTF 387

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWND-VKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           C P++ +Y  ++       ++D +    +D V    L  D+ +YT+LIHGLC   K +  
Sbjct: 388 CKPDIQTYYPVLKSCFKTGKIDSLSNFLDDMVNKHHLSLDVSAYTLLIHGLCRANKCEWG 447

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
              F EM+ K + P+  T   L   + Q +M     R++
Sbjct: 448 YNLFEEMVGKAITPRYKTCALLLDEIKQKNMHDAAERIE 486



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 103/230 (44%), Gaps = 13/230 (5%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A R   ++    +E N  + N+LL+ +C+          E+ +  A  +F E++   I P
Sbjct: 165 AVRVFDDLGNFELEKNTESMNLLLDTLCK----------ERKVEQARAIFLELKPH-ISP 213

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           +  +F+I +H + +A++   +   +  MK  G  P V +YS++++  C         ELL
Sbjct: 214 NTHTFNIFIHGWCKANRVDEAEWTIQEMKGHGCRPCVISYSTIIQSYCRQSNFRKVYELL 273

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            +M   G  P+  TY          +    A+++  +M+  G C P+   YN LI     
Sbjct: 274 DDMQAQGCAPNVVTYTTIMCSLTKVEQFEEALQIAERMRSVG-CKPDTLFYNALIHTLGR 332

Query: 198 LNRM-DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
             ++ + VR    ++  +G+ P+  +Y  +I   C   + ++A     E+
Sbjct: 333 AGQLREAVRVFEVEMPKTGVPPNTSTYNSMIAMFCHHSQEQKALNLLREI 382



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/231 (19%), Positives = 102/231 (44%), Gaps = 10/231 (4%)

Query: 55  RFEKTIRNAEKVFDEMRVR-GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE---KGI 110
           RF+   ++A  +F     R G E    ++ +++ +  +  Q    +DK+  + E   +G 
Sbjct: 87  RFKDDWKSALGLFRWAESRLGYEHAPEAYDMMVDILGKLKQ----VDKMRALMEEMRQGN 142

Query: 111 CPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMK 170
              ++T +  ++ L   G  EDA  +  ++    +  + E+ N         +    A  
Sbjct: 143 LVRLSTVAKAMRRLAGAGEWEDAVRVFDDLGNFELEKNTESMNLLLDTLCKERKVEQARA 202

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           ++ ++K      PN H++NI I  +   NR+D       ++KG G  P + SY+ +I   
Sbjct: 203 IFLELKPH--ISPNTHTFNIFIHGWCKANRVDEAEWTIQEMKGHGCRPCVISYSTIIQSY 260

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           C +  +++  +   +M  +G  P  VT+ T+   L + +      ++ +++
Sbjct: 261 CRQSNFRKVYELLDDMQAQGCAPNVVTYTTIMCSLTKVEQFEEALQIAERM 311



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 2/158 (1%)

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC   ++E A  +  E+ +  + P+  T+N F   +      + A    ++MK  G
Sbjct: 187 LLDTLCKERKVEQARAIFLEL-KPHISPNTHTFNIFIHGWCKANRVDEAEWTIQEMKGHG 245

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C P + SY+ +I  +   +    V E+ +D++  G  P++ +YT ++  L + ++++EA
Sbjct: 246 -CRPCVISYSTIIQSYCRQSNFRKVYELLDDMQAQGCAPNVVTYTTIMCSLTKVEQFEEA 304

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            Q    M   G  P  + +  L   L ++  LR   R+
Sbjct: 305 LQIAERMRSVGCKPDTLFYNALIHTLGRAGQLREAVRV 342


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 135/285 (47%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI+G CK   +  A   + +M   G  PN++TY  LL+G C++  L           
Sbjct: 383 FNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQL----------E 432

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V +EM  +G E ++  ++++L    +  +   +LD L  M +KG  P + T+++++
Sbjct: 433 EAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLI 492

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R EDA  L  +M+ +GV  +  TYN     +        A+KL   M   G C
Sbjct: 493 FGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRG-C 551

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  +YN LI  F  L   +    +++++    L P   S  +LI+GLC   K   A +
Sbjct: 552 PLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALE 611

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              +MI +GL P  VT+ +L  GL +   +R    L  KL  E I
Sbjct: 612 LLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGI 656



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 132/261 (50%), Gaps = 13/261 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G+CK N+++ A   L EM  +G E N++ YNVLL  +C+             + 
Sbjct: 418 YTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGK----------VP 467

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  EM  +G +PD+ +F+ ++    +  + + +L     M   G+     TY++++
Sbjct: 468 KALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLI 527

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAE-TYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
                 G I++A +L+ +M+  G CP  E TYN   K +        A+ L+ +M    L
Sbjct: 528 HAFLRGGAIQEALKLVNDMLFRG-CPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDL 586

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VP+  S N+LI     + ++    E+  D+   GL PD+ +Y  LI+GLC+    +EA 
Sbjct: 587 -VPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAF 645

Query: 241 QYFVEMIEKGLLPQKVTFETL 261
             F ++  +G+ P  +T+ TL
Sbjct: 646 NLFNKLQAEGIQPDAITYNTL 666



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 131/321 (40%), Gaps = 58/321 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +IYG C++NRI    + +  M+ RG  PN +TY VL+NG+CR   +  ++     + 
Sbjct: 281 FNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVP 340

Query: 62  NAEKV----------------------FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
               V                      +D+M   G  PDV +F+ ++H   +      ++
Sbjct: 341 TPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAV 400

Query: 100 DKLNFMKEKGICPTVATYSS-----------------------------------VVKCL 124
           D +N M   G  P + TY++                                   +++ L
Sbjct: 401 DMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRAL 460

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G++  A ++LGEM   G  P   T+N              A+ LYR M  DG+ + N
Sbjct: 461 CKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGV-IAN 519

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
             +YN LI  F+    +    ++ ND+   G   D  +Y  LI   C+    ++A   F 
Sbjct: 520 TVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFD 579

Query: 245 EMIEKGLLPQKVTFETLYRGL 265
           EM+ K L+P  ++   L  GL
Sbjct: 580 EMVRKDLVPSNISCNLLINGL 600



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 17/269 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+   CK  ++  A   LGEM ++G +P++ T+N L+ G+C+       +R E    
Sbjct: 453 YNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCK------VDRKE---- 502

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  ++ +M + G+  +  +++ ++H + R    Q +L  +N M  +G      TY+ ++
Sbjct: 503 DALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLI 562

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C  G  E A  L  EMVR  + PS  + N              A++L R M   GL 
Sbjct: 563 KAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGL- 621

Query: 182 VPNMHSYNILIGMFMALNRMDMVRE---IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
            P++ +YN LI     L +M  +RE   ++N ++  G+ PD  +Y  LI   C    + +
Sbjct: 622 APDVVTYNSLIN---GLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDD 678

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           A    +  +E   +P  VT+  L    I+
Sbjct: 679 AYLLLLRGVENAFIPNDVTWYILVSNFIK 707



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 125/270 (46%), Gaps = 16/270 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI+   K +R++ A + L EM   G  P+V T+N ++ G+CR   +H         
Sbjct: 245 VYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIH--------- 295

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               K+ D M  RG  P+  ++ ++++   R  +    +D+   +  K   P    ++ +
Sbjct: 296 -EGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGK----VDEAQVLLNKVPTPNDVHFTIL 350

Query: 121 VKCLCSCGRIEDAEELL-GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +      GR+++A   L  +M++NG  P   T+N        +     A+ +   M  +G
Sbjct: 351 INGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANG 410

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C PN+ +Y  L+  F   N+++    + N++   G   ++  Y +L+  LC+  K  +A
Sbjct: 411 -CTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKA 469

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
                EM +KG  P   TF TL  GL + D
Sbjct: 470 LDMLGEMSDKGCKPDIFTFNTLIFGLCKVD 499



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 18/263 (6%)

Query: 8   GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVF 67
             C +N +D A   L +M + G  PN V Y  L++ + +R            +  A K+ 
Sbjct: 217 ALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKR----------DRVNEALKLL 266

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127
           +EM + G  PDV +F+ V++   R ++       ++ M  +G  P   TY  ++  LC  
Sbjct: 267 EEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRV 326

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDGLCVPNM 185
           G++++A+ LL ++      P+   +      Y   GR D   A  LY +M ++G C P++
Sbjct: 327 GKVDEAQVLLNKVPT----PNDVHFTILINGYVKSGRLDEANAF-LYDKMIKNG-CRPDV 380

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
            ++N LI        M    ++ ND+  +G  P+L +YT L+ G C+K + +EA     E
Sbjct: 381 FTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNE 440

Query: 246 MIEKGLLPQKVTFETLYRGLIQS 268
           M  KG     + +  L R L ++
Sbjct: 441 MSAKGFELNIMGYNVLLRALCKN 463



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 98/196 (50%), Gaps = 5/196 (2%)

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
           EP   S+++VL +   A+ P ++ +    M  KG+ PTV T+  V+K LC    +++A  
Sbjct: 170 EPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACS 229

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           LL +M ++G  P++  Y         R   N A+KL  +M   G C+P++ ++N +I   
Sbjct: 230 LLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMG-CLPDVDTFNDVIYGL 288

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
             LNR+    ++ + +   G  P+  +Y +L++GLC   K  EA      ++ K   P  
Sbjct: 289 CRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEA----QVLLNKVPTPND 344

Query: 256 VTFETLYRGLIQSDML 271
           V F  L  G ++S  L
Sbjct: 345 VHFTILINGYVKSGRL 360



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 109/256 (42%), Gaps = 16/256 (6%)

Query: 17  MAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIE 76
           +A     EM+ +GV P V T+ V++  +C              + NA  +  +M   G  
Sbjct: 191 VAANVFYEMLSKGVIPTVYTFGVVMKALC----------MVNEVDNACSLLRDMTKHGCV 240

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           P+   +  ++H  S+  +   +L  L  M   G  P V T++ V+  LC   RI +  +L
Sbjct: 241 PNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKL 300

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
           +  M+  G  P+  TY             + A  L  ++       PN   + ILI  ++
Sbjct: 301 VDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVP-----TPNDVHFTILINGYV 355

Query: 197 ALNRMDMVRE-IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
              R+D     +++ +  +G  PD+ ++  LIHGLC+K     A     +M   G  P  
Sbjct: 356 KSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNL 415

Query: 256 VTFETLYRGLIQSDML 271
           +T+ TL  G  + + L
Sbjct: 416 ITYTTLLDGFCKKNQL 431



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 83/176 (47%), Gaps = 2/176 (1%)

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
           +KG C T   Y  ++  L +    +  ++LL ++   G+      + C  K Y GR +  
Sbjct: 95  QKGYCHTFDVYHVLIDKLGAAKEFKVIDKLLLQIKEEGIAFRESLFICIMK-YYGRANLP 153

Query: 167 G-AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
           G A ++   MK    C P   SYN+++ + ++ N   +   ++ ++   G+ P + ++ +
Sbjct: 154 GQATRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGV 213

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           ++  LC   +   AC    +M + G +P  V ++TL   L + D +    +L +++
Sbjct: 214 VMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEM 269



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 94/238 (39%), Gaps = 42/238 (17%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVAT 116
           K  +  +K+  +++  GI    + F  ++  Y RA+ P  +   L  MK    C PT  +
Sbjct: 116 KEFKVIDKLLLQIKEEGIAFRESLFICIMKYYGRANLPGQATRMLLDMKGVYCCEPTFKS 175

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+ V+  L S                   CPS                   A  ++ +M 
Sbjct: 176 YNVVLDILVSAN-----------------CPSV------------------AANVFYEML 200

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G+ +P ++++ +++     +N +D    +  D+   G  P+   Y  LIH L ++ + 
Sbjct: 201 SKGV-IPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRV 259

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL-----DEESITFG 289
            EA +   EM   G LP   TF  +  GL + + +    +L  ++         IT+G
Sbjct: 260 NEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYG 317


>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 643

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 137/284 (48%), Gaps = 21/284 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR----------ASLH 51
           Y  L+   C+ NR+  A + L EM  +G  P+ VTY  +++ +C+           A++ 
Sbjct: 162 YNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAMP 221

Query: 52  PSERFEKTIRNA-------EKVFD---EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK 101
           P       I  A       ++VF    +M  RG++P+V +++ ++  + +A + +++   
Sbjct: 222 PVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAI 281

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
           L  M   G  P V T++++V+ L   GR+ DA ++   MV  G  PS  +YN   +    
Sbjct: 282 LARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCS 341

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
             D  GA  +   M++ G C PN+ +Y+ LI  F     +     IWND+  SG  P++ 
Sbjct: 342 VGDLKGASSILNSMEQHG-CFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVV 400

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            YT ++   C+K  + +A     +M+ +   P  VTF TL R L
Sbjct: 401 VYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSL 444



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 129/286 (45%), Gaps = 28/286 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH---------- 51
           YT+++  +CK   + MA   L  M+  G  PNVVT+  L+ G+     +H          
Sbjct: 262 YTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMV 321

Query: 52  -----PSE-RFEKTIRN---------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                PS   +   IR          A  + + M   G  P+V ++S ++  +S+A    
Sbjct: 322 AEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLG 381

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++   N M   G  P V  Y+++V   C       A+ L+ +M+     P+  T+N   
Sbjct: 382 GAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLI 441

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSG 215
           +     +    A+ ++ +M+  G CVPN  +YN LI G+F   N  D +  +  +++  G
Sbjct: 442 RSLCDCRRVGRALGVFHEMRRHG-CVPNGRTYNELIHGLFREGNCGDALHMV-TEMQSHG 499

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   L +Y  ++ GLC+ +  +EA  +  +MI +G+ P   TF  +
Sbjct: 500 IELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAI 545



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 125/301 (41%), Gaps = 44/301 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G C +  +  A   L  M + G  PNV TY+ L++G  +   L           
Sbjct: 332 YNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLG---------- 381

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++++M   G +P+V  ++ ++ V+ +      +   ++ M  +   P   T+++++
Sbjct: 382 GAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLI 441

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
           + LC C R+  A  +  EM R+G  P+  TYN          +   A+ +  +M+     
Sbjct: 442 RSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIE 501

Query: 178 ----------DGLCV--------------------PNMHSYNILIGMFMALNRMDMVREI 207
                      GLC                     PN  +++ +I  +     + M   +
Sbjct: 502 LSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWM 561

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +       ++  YT+L+  LC + K  +A  Y ++M+ +G+ P  VT+  L RG+ +
Sbjct: 562 LGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVRGVFR 621

Query: 268 S 268
           +
Sbjct: 622 N 622



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 45/214 (21%)

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           V+D MR  G+ P+V ++++++    + ++   +   L+ M  KG  P   TY+++V  LC
Sbjct: 146 VYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLC 205

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
              R+++A E+L  M      P A +YN               + L R+           
Sbjct: 206 KLDRLDEATEVLAAMP-----PVAASYNAI------------VLALCREF---------- 238

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
                         RM  V  + +D+ G GL P++ +YT ++   C+  + + AC     
Sbjct: 239 --------------RMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILAR 284

Query: 246 MIEKGLLPQKVTFETLYRGLIQS----DMLRTWR 275
           M+  G  P  VTF  L RGL       D L  WR
Sbjct: 285 MVITGCTPNVVTFTALVRGLFDDGRVHDALDMWR 318



 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 39/73 (53%)

Query: 199 NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
           N +  V  ++++++  G+ P++ +Y +L+  LC+  +   A +   EM  KG  P  VT+
Sbjct: 138 NMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTY 197

Query: 259 ETLYRGLIQSDML 271
            T+   L + D L
Sbjct: 198 ATIVSVLCKLDRL 210



 Score = 37.4 bits (85), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR-ASLHPSERFEKT 59
           +YT L+   C  +++  A  +L +M+  G+ PN VT+NVL+ GV R    + PS+  +  
Sbjct: 576 VYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVRGVFRNLGCIEPSDFIQHI 635

Query: 60  IRN 62
             N
Sbjct: 636 TMN 638


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 135/300 (45%), Gaps = 32/300 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+G CK  ++D A   L EM +RG+ P V  +N ++ G+C+      +  + KT+ 
Sbjct: 33  YGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVA 92

Query: 62  N-------------------------AEKVFDEMRVRG-IEPDVTSFSIVLHVYSRAHQP 95
                                     A ++F+ M       P+V +++ V++   +  + 
Sbjct: 93  GTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKL 152

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +++ L+ M E G CP V TYS +V+ LC  GR +    LL EM R G  P    YN  
Sbjct: 153 DRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTL 212

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                  +  + A++L + M   G C P + +YN L+ +F    ++D    +   +   G
Sbjct: 213 LNGLCKSRRLDEALELVQLMIRSG-CYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERG 271

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
             PD+ +Y  +I GLC   +  +A     +M+    +P  +T+ T+  GL      + WR
Sbjct: 272 CPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLC-----KDWR 326



 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 128/270 (47%), Gaps = 17/270 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ G CK  R D     L EM  RG +P+V+ YN LLNG+C+      S R ++ + 
Sbjct: 174 YSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCK------SRRLDEAL- 226

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++   M   G  P V +++ ++ ++ R+ Q   +   +  M E+G  P V  Y++V+
Sbjct: 227 ---ELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVI 283

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF----KEYRGRKD--ANGAMKLYRQM 175
             LC   R++DA+ LL +MV     P   TY+       K++R   D     A ++   M
Sbjct: 284 AGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMM 343

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           K+ G C PN  +Y ++I       +      +   +  S + PDL S++M+I  LC+   
Sbjct: 344 KQTG-CPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHD 402

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
              A + F  M E+   P  V +  L  GL
Sbjct: 403 LDAAYKIFGMMSERECKPNPVAYAALIDGL 432



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 131/273 (47%), Gaps = 17/273 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G CK  ++D A   L  M E G  PNV+TY+VL+ G+C+      + R +K   
Sbjct: 139 YTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCK------AGRTDKGF- 191

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +  EM  RG +PDV  ++ +L+   ++ +   +L+ +  M   G  PTV TY+S++
Sbjct: 192 ---TLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLM 248

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C   +++ A  L+  M   G  P    YN            + A  L +QM     C
Sbjct: 249 ELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVA-ARC 307

Query: 182 VPNMHSYNILIGMFMALNRMDM------VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           VP++ +Y+ +I       R+D         EI   +K +G  P+  +Y ++I GLC  +K
Sbjct: 308 VPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARK 367

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            ++A      MI+  ++P   +F  +   L +S
Sbjct: 368 SQQALALLRRMIDSEVVPDLSSFSMVIGSLCKS 400



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 122/270 (45%), Gaps = 18/270 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+  +C+  ++D A R +  M ERG  P+V+ YN ++ G+CR A L  ++   K + 
Sbjct: 244 YNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMV 303

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP------QLSLDKLNFMKEKGICPTVA 115
            A  V          PDV ++S ++    +  +       + + + L  MK+ G  P   
Sbjct: 304 AARCV----------PDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAG 353

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           TY+ V++ LC   + + A  LL  M+ + V P   +++          D + A K++  M
Sbjct: 354 TYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMM 413

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            E   C PN  +Y  LI        +D    ++ ++      P + +Y  ++ GLC   +
Sbjct: 414 SERE-CKPNPVAYAALIDGLSKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDGLCGVGR 471

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            +EA +    MI K   P   ++  L RGL
Sbjct: 472 IEEAVRMVEGMIHKECFPDGASYGALIRGL 501



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 124/271 (45%), Gaps = 18/271 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY +L+ G CK  R+D A   +  MI  G  P VVTYN L+   CR           K +
Sbjct: 208 MYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCR----------SKQV 257

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++   M  RG  PDV +++ V+    R  +   +   L  M      P V TYS++
Sbjct: 258 DRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTI 317

Query: 121 VKCLCSCGRI------EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
           +  LC   R+      E A E+L  M + G  P+A TY    +     + +  A+ L R+
Sbjct: 318 IDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRR 377

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M  D   VP++ S++++IG     + +D   +I+  +      P+  +Y  LI GL +  
Sbjct: 378 MI-DSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGG 436

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +  +A + F  M+E    P   T+ ++  GL
Sbjct: 437 EVDKAVRVFELMVES-FRPGVATYNSVLDGL 466



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 127/282 (45%), Gaps = 6/282 (2%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G C+  R+D A+  L +M+     P+V+TY+ +++G+C+   +    + E    
Sbjct: 279 YNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEA--- 335

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ + M+  G  P+  ++++V+    RA + Q +L  L  M +  + P ++++S V+
Sbjct: 336 -ACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVI 394

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    ++ A ++ G M      P+   Y           + + A++++  M E    
Sbjct: 395 GSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFR- 453

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +YN ++     + R++    +   +      PD  SY  LI GLC     +EA +
Sbjct: 454 -PGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYE 512

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            F  +  KG   +   +  L   L +   L     +  KL E
Sbjct: 513 LFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIE 554



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 113/253 (44%), Gaps = 12/253 (4%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
           PN  TY  L++G+C+   L            A ++ DEMR RGI P V   + V+    +
Sbjct: 28  PNEFTYGSLIHGLCKAGKLD----------QAYELLDEMRDRGIPPGVAVHNGVIRGLCK 77

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC-PSAE 150
           A +   +L     +      P + T++ +V  L   GR+E+A ++   M  +  C P+  
Sbjct: 78  AGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVV 137

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           TY             + A++L   M E G C PN+ +Y++L+       R D    +  +
Sbjct: 138 TYTTVINGLCKDGKLDRAIELLDLMNETG-CCPNVITYSVLVEGLCKAGRTDKGFTLLQE 196

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           +   G  PD+  Y  L++GLC+ ++  EA +    MI  G  P  VT+ +L     +S  
Sbjct: 197 MTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQ 256

Query: 271 LRTWRRLKKKLDE 283
           +    RL + + E
Sbjct: 257 VDRAFRLIQVMSE 269



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 11/188 (5%)

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
            L++  RA Q       +   +E+   P   TY S++  LC  G+++ A ELL EM   G
Sbjct: 4   ALNLLVRAGQHG---QAVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRG 60

Query: 145 VCPSAETYNCFFKEY--RGR-KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
           + P    +N   +     GR  DA G  K     K    C P++ ++NIL+   +   R+
Sbjct: 61  IPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTK----CTPDIITFNILVDALVKSGRV 116

Query: 202 DMVREIWNDVKGSGLG-PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           +   +I+  +  S    P++ +YT +I+GLC+  K   A +    M E G  P  +T+  
Sbjct: 117 EEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSV 176

Query: 261 LYRGLIQS 268
           L  GL ++
Sbjct: 177 LVEGLCKA 184



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 107/249 (42%), Gaps = 47/249 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G C+  +   A   L  MI+  V P++ ++++++  +C+   L           
Sbjct: 355 YAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDA--------- 405

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F  M  R  +P+  +++ ++   S+  +   ++     M E    P VATY+SV+
Sbjct: 406 -AYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES-FRPGVATYNSVL 463

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GRIE+A  ++  M+               KE                      C
Sbjct: 464 DGLCGVGRIEEAVRMVEGMIH--------------KE----------------------C 487

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  SY  LI     ++ ++   E++  V+  G   ++  Y +L++ LC+K++  +A  
Sbjct: 488 FPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHG 547

Query: 242 YFVEMIEKG 250
              ++IE G
Sbjct: 548 VANKLIEAG 556


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 134/275 (48%), Gaps = 14/275 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I+G+ K   +  A     +M++ G+ PNVVT N +++G+C+  ++           
Sbjct: 124 YSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMD---------- 173

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE V  +M    I P+ T+++ ++H Y  + Q   ++  L  M   G  P V TY+ ++
Sbjct: 174 KAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLI 233

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLC  G   +A E+   M+++G  P A TY      Y    +      +   M ++G+ 
Sbjct: 234 DCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGM- 292

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N H+++I I  +    R+D     +  ++  G  PD+ +YT +I GLC+  +  +A  
Sbjct: 293 RSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMS 352

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            F +MI+ GL P  +TF TL  G     M   W +
Sbjct: 353 RFCQMIDDGLSPNIITFTTLIHGF---SMYGKWEK 384



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 124/263 (47%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+G+    +   A R L EM   G  PNVVTYN+L++ +C+ +  H   R      
Sbjct: 194 YNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCK-SGFHAEAR------ 246

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++F+ M   G +PD T++  +LH Y+         +  + M + G+     T+S  +
Sbjct: 247 ---EIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEI 303

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C CGR+++A     +M + G  P   TY             + AM  + QM +DGL 
Sbjct: 304 YAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLS 363

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ ++  LI  F    + +   E++ ++   G+ PD+  +T +I  L ++ K  EA +
Sbjct: 364 -PNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQK 422

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F  M   G  P  V++ T+  G
Sbjct: 423 LFDLMPRAGAKPNVVSYNTMIHG 445



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 135/337 (40%), Gaps = 54/337 (16%)

Query: 2   YTSLIYGWCKINRI-DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +T L+   C   R  D     L  M E G  P+V +Y+ LL G+C           EK  
Sbjct: 51  FTPLLRTLCAKKRTSDAMNIVLRRMPELGCTPDVFSYSTLLKGLCA----------EKKC 100

Query: 61  RNAEKVFDEMRVRG--IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
             A ++   M   G    PDV S+S V+H + +      +      M + GI P V T +
Sbjct: 101 EEAAELIHMMAEDGDNCPPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCN 160

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           SV+  LC    ++ AE +L +M+   + P+  TYN     Y        A+++ ++M  D
Sbjct: 161 SVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRD 220

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG--------- 229
           G   PN+ +YN+LI            REI+N +  SG  PD  +Y  L+HG         
Sbjct: 221 GQ-RPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVE 279

Query: 230 --------------------------LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
                                      C+  +  EA   F++M + G +P  VT+ T+  
Sbjct: 280 MNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVID 339

Query: 264 GL-----IQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
           GL     +   M R  + +   L    ITF +    +
Sbjct: 340 GLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGF 376



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 114/245 (46%), Gaps = 27/245 (11%)

Query: 6   IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEK 65
           IY +CK  R+D A     +M + G  P++VTY  +++G+C+   L           +A  
Sbjct: 303 IYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLD----------DAMS 352

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
            F +M   G+ P++ +F+ ++H +S   + + + +    M ++GI P V  +++++  L 
Sbjct: 353 RFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLF 412

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
             G++ +A++L   M R G  P+  +YN     Y    +    MKL   M   GL  P  
Sbjct: 413 KEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGL-KPTA 471

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
            ++N L+   +++                GL PD+D+   LI   CE  + ++    F E
Sbjct: 472 VTFNTLLDGMVSM----------------GLKPDVDTCKTLIDSCCEDGRIEDILTLFRE 515

Query: 246 MIEKG 250
           M+ K 
Sbjct: 516 MLGKA 520



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 95/216 (43%), Gaps = 2/216 (0%)

Query: 72  VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIE 131
            + + PD+ +F I++     A    L    L  + + G+      ++ +++ LC+  R  
Sbjct: 6   AKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKKRTS 65

Query: 132 DAEEL-LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL-CVPNMHSYN 189
           DA  + L  M   G  P   +Y+   K     K    A +L   M EDG  C P++ SY+
Sbjct: 66  DAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYS 125

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            +I  F     +     ++  +   G+ P++ +   +I GLC+ Q   +A     +MI++
Sbjct: 126 TVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDE 185

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
            ++P   T+ +L  G + S       R+ K++  + 
Sbjct: 186 HIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDG 221



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 93/196 (47%), Gaps = 9/196 (4%)

Query: 108 KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG 167
           K + P +AT+  ++ C C  G +      LG++++ G+   A  +    +    +K  + 
Sbjct: 7   KKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKKRTSD 66

Query: 168 AMKL-YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK--GSGLGPDLDSYT 224
           AM +  R+M E G C P++ SY+ L+    A  + +   E+ + +   G    PD+ SY+
Sbjct: 67  AMNIVLRRMPELG-CTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYS 125

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            +IHG  ++    +A   F +M++ G+ P  VT  ++  GL +   +     + +++ +E
Sbjct: 126 TVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDE 185

Query: 285 SI-----TFGSEFQNY 295
            I     T+ S    Y
Sbjct: 186 HIMPNCTTYNSLIHGY 201



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 26/141 (18%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++T++I    K  ++  A++    M   G +PNVV+YN +++G                +
Sbjct: 403 IFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGY----------FIAGEV 452

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               K+ D+M + G++P   +F+ +                L+ M   G+ P V T  ++
Sbjct: 453 GEVMKLLDDMLLIGLKPTAVTFNTL----------------LDGMVSMGLKPDVDTCKTL 496

Query: 121 VKCLCSCGRIEDAEELLGEMV 141
           +   C  GRIED   L  EM+
Sbjct: 497 IDSCCEDGRIEDILTLFREML 517


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 137/288 (47%), Gaps = 26/288 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS----ERFE 57
           Y +LI G+C   +++   R   EM +RG++P++ TYN LL G+C    L  +    + F+
Sbjct: 526 YNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFK 585

Query: 58  KT---------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            +                     I + E +F+E+  + +E +   ++I++  + +     
Sbjct: 586 ASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVA 645

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L  L  MK KGI P  ATYSS++  +C+ G +EDA+ L+ EM + G  P+   Y    
Sbjct: 646 AALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALI 705

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y      + A   + +M    +  PN  +Y ++I  +  L  M+    +   +K SG+
Sbjct: 706 GGYCKLGQMDTAESTWLEMISFNI-HPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGI 764

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            PD+ +Y +L +G C+      A +   +M  +GL   ++T+ TL  G
Sbjct: 765 VPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 812



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 134/284 (47%), Gaps = 11/284 (3%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +LI+G C   ++  A R + EM+ERG+  + +TYN L+ G C           E  +   
Sbjct: 493 ALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCN----------EGKVEGC 542

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            ++ +EM  RGI+PD+ +++ +L       +   ++   +  K  G+   + TY  +++ 
Sbjct: 543 FRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEG 602

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C   RIED E L  E++   +  ++  YN   K +    +   A++L   MK  G+ +P
Sbjct: 603 YCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGI-LP 661

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N  +Y+ LI     +  ++  + + ++++  G  P++  YT LI G C+  +   A   +
Sbjct: 662 NCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTW 721

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +EMI   + P K T+  +  G  +   +     L  K+ E  I 
Sbjct: 722 LEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIV 765



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/345 (20%), Positives = 144/345 (41%), Gaps = 61/345 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           Y +LI G  K+N  D     L EMI  G  PNVV +N L++G C+  ++  + + +    
Sbjct: 316 YGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMI 375

Query: 60  -----------------------IRNAEKVFDEMRVRG--IEPDV--------------- 79
                                  I +AE   +E+   G  I PD                
Sbjct: 376 SKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYH 435

Query: 80  TSFSIVLHVYSRAHQP-----------------QLSLDKLNF-MKEKGICPTVATYSSVV 121
           ++F     + SR  +P                  L   +L F + EKG   +  T ++++
Sbjct: 436 SAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALI 495

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++ +A  ++ EM+  G+     TYN     +       G  +L  +M + G+ 
Sbjct: 496 HGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGI- 554

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++++YN L+     + ++D   ++W++ K SGL  ++ +Y +++ G C+  + ++   
Sbjct: 555 QPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVEN 614

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F E++ K +    + +  + +   Q+  +    +L + +  + I
Sbjct: 615 LFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGI 659



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 136/316 (43%), Gaps = 38/316 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           +T++I   CK  +++ A     +M + G+ PNVVTYN ++NG+C+   L           
Sbjct: 246 FTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMT 305

Query: 51  ----HPSERFEKTIRNA----------EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                P+ +    + N             V DEM   G  P+V  F+ ++  Y +    +
Sbjct: 306 VKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIE 365

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   + M  K I PT  T  S+++  C   +IE AE  L E++ +G+  S    NC+ 
Sbjct: 366 GALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGL--SIHPDNCYS 423

Query: 157 ------KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
                 K++R     + A +  + M        ++    ++ G+      ++   E+W  
Sbjct: 424 VVHWLCKKFR----YHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLE-ATELWFR 478

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           +   G      +   LIHGLC   K  EA +   EM+E+GL   ++T+  L  G      
Sbjct: 479 LLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGK 538

Query: 271 LRTWRRLKKKLDEESI 286
           +    RL++++ +  I
Sbjct: 539 VEGCFRLREEMTKRGI 554



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 140/307 (45%), Gaps = 28/307 (9%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI--R 61
           SL+ G+CK ++I+ AE  L E++  G+  +      +++ +C++   H + RF K +  R
Sbjct: 388 SLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSR 447

Query: 62  N--AEKVFDEMRVRGIEPD----------------------VTSFSIVLHVYSRAHQPQL 97
           N     +   M V G+  D                      VTS +++  +      P+ 
Sbjct: 448 NFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEA 507

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           S   +  M E+G+     TY++++   C+ G++E    L  EM + G+ P   TYN   +
Sbjct: 508 S-RIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLR 566

Query: 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
                   + A+KL+ + K  GL + N+H+Y I++  +   NR++ V  ++N++    + 
Sbjct: 567 GLCNVGKLDDAIKLWDEFKASGL-ISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKME 625

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            +   Y ++I   C+      A Q    M  KG+LP   T+ +L  G+    ++   + L
Sbjct: 626 LNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHL 685

Query: 278 KKKLDEE 284
             ++ +E
Sbjct: 686 IDEMRKE 692



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 109/247 (44%), Gaps = 47/247 (19%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           +  +G  P++ T N LL      +SL  +  FEK      +VF  M   G  PDV SF+ 
Sbjct: 200 LARKGTFPSLKTCNFLL------SSLVKANEFEKCC----EVFRVMS-EGACPDVFSFTN 248

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           V++   +  + + +++    M++ GI P V TY+ ++  LC  GR+++A EL  +M   G
Sbjct: 249 VINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKG 308

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           V P                                    N+ +Y  LI   + LN  D V
Sbjct: 309 VQP------------------------------------NLKTYGALINGLIKLNFFDKV 332

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             + +++ GSG  P++  +  LI G C+    + A +    MI K + P  VT  +L +G
Sbjct: 333 NHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQG 392

Query: 265 LIQSDML 271
             +SD +
Sbjct: 393 FCKSDQI 399



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 11/192 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  +I   C+   +  A + L  M  +G+ PN  TY+ L++GVC              +
Sbjct: 630 VYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIG----------LV 679

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A+ + DEMR  G  P+V  ++ ++  Y +  Q   +      M    I P   TY+ +
Sbjct: 680 EDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVM 739

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G +E A  LL +M  +G+ P   TYN     +    D + A K+  QM  +GL
Sbjct: 740 IDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGL 799

Query: 181 CVPNMHSYNILI 192
            V  + +Y  L+
Sbjct: 800 PVDEI-TYTTLV 810



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 109/239 (45%), Gaps = 9/239 (3%)

Query: 53  SERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS---RAHQPQLSLDKLNFMKEKG 109
           SE+F   I NA  +F    V G      +F +++HVYS   R      ++D    +  KG
Sbjct: 147 SEKFHIEIANA--LFGLTSVVGRFEWTQAFDLLIHVYSTQFRNLGFSCAVDVFYLLARKG 204

Query: 110 ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY-NCFFKEYRGRKDANGA 168
             P++ T + ++  L      E   E+   ++  G CP   ++ N      +G K  N A
Sbjct: 205 TFPSLKTCNFLLSSLVKANEFEKCCEVF-RVMSEGACPDVFSFTNVINALCKGGKMEN-A 262

Query: 169 MKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228
           ++L+ +M++ G+  PN+ +YN +I       R+D   E+   +   G+ P+L +Y  LI+
Sbjct: 263 IELFMKMEKLGIS-PNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALIN 321

Query: 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           GL +   + +      EMI  G  P  V F  L  G  +   +    ++K  +  ++IT
Sbjct: 322 GLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNIT 380


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 130/263 (49%), Gaps = 11/263 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           + LI G  K+  I+ A   L ++ + GV PN+  YN ++N +C+   L            
Sbjct: 334 SGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKL----------EE 383

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           AE +F  M  RG+ P+  +++I++  + R  +  ++    N M E GI  TV +Y+S++ 
Sbjct: 384 AELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMIN 443

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
           C C  G+++ AE L  EMV  G+ P+  TY      Y        A KLY +M   G+  
Sbjct: 444 CQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGI-A 502

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN  ++  LI     +N+M    ++++++    + P+  +Y +LI G C +     A + 
Sbjct: 503 PNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFEL 562

Query: 243 FVEMIEKGLLPQKVTFETLYRGL 265
             EMI+KGL P   T+  L  GL
Sbjct: 563 LDEMIKKGLSPDTYTYRPLIAGL 585



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 137/294 (46%), Gaps = 26/294 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKT 59
           +Y S+I   CK  +++ AE     M ERG+ PN VTY +L++G  RRA L  +   F K 
Sbjct: 367 VYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKM 426

Query: 60  I------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           I                        + AE +F EM  +G++P V +++ ++  Y +    
Sbjct: 427 IECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLV 486

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +    + M  KGI P   T+++++  LC   ++ +A +L  EMV   + P+  TYN  
Sbjct: 487 PKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVL 546

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            + +    +   A +L  +M + GL  P+ ++Y  LI    +  R+   +E  ND+    
Sbjct: 547 IEGHCREGNTTRAFELLDEMIKKGLS-PDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKH 605

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              D   YT L+ G C++ + KEA     EM+ +GL    V++  L  G +  +
Sbjct: 606 QRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQN 659



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 141/281 (50%), Gaps = 14/281 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI G+CK   +  A +   EM  +G+ PN VT+  L+ G+C+             + 
Sbjct: 473 YTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQI----------NKMA 522

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+FDEM    I P+  ++++++  + R      + + L+ M +KG+ P   TY  ++
Sbjct: 523 EASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLI 582

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LCS GR+ +A+E + ++           Y    + +        A+   ++M   GL 
Sbjct: 583 AGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQ 642

Query: 182 VPNMHSYNILIGMFMALNRMD-MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           + ++ SY +LI    ALN+ D ++ E+  ++ G G+ PD   YT+LI G  +    K+A 
Sbjct: 643 M-DLVSYAVLISG--ALNQNDRILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAF 699

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +++  MI +G +P  VT+  L  GL ++  +   + L K++
Sbjct: 700 EFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRM 740



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 135/285 (47%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y   I G CK  R+  A      + E+G++ ++VTY  L+ G+CR       + FE  + 
Sbjct: 263 YNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCR------IQEFEVGM- 315

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++ DEM   G  P   + S ++    +    + + + LN + + G+ P +  Y+S++
Sbjct: 316 ---EMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMI 372

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++E+AE L   M   G+ P+  TY      +  R   + A   + +M E G+ 
Sbjct: 373 NSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGIS 432

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              ++SYN +I       +M M   ++ ++   GL P + +YT LI G C+     +A +
Sbjct: 433 -ATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFK 491

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            + EM  KG+ P  VTF  L  GL Q + +    +L  ++ E  I
Sbjct: 492 LYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKI 536



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 130/262 (49%), Gaps = 17/262 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER--FEKT 59
           YT+L+ G+CK  RI  A     EM+ RG++ ++V+Y VL++G     +L+ ++R  FE  
Sbjct: 613 YTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISG-----ALNQNDRILFE-- 665

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
                 +  EM  +G++PD   ++I++  + ++   + + +    M  +G  P   TY++
Sbjct: 666 ------LLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTA 719

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +V  L   G + +A+ L   M+     P+  TY CF        +   A++L+  M +  
Sbjct: 720 LVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGS 779

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
               N  +YNILI  +  + +     ++ + + G G+ PD  +Y+  I+  C++     A
Sbjct: 780 F--ANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAA 837

Query: 240 CQYFVEMIEKGLLPQKVTFETL 261
              +  M+++GL P +V F  L
Sbjct: 838 MDMWECMLQRGLKPDRVVFNFL 859



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 109/239 (45%), Gaps = 12/239 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G+ K   +  A  F   MI  G  PN VTY  L+NG+ +             +
Sbjct: 681 IYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAG----------YV 730

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+ +F  M V    P+  ++   L   ++    + +L   N M +     TV TY+ +
Sbjct: 731 NEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSFANTV-TYNIL 789

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C  G+ ++A +LL  M+  G+ P   TY+ F  EY  R + + AM ++  M + GL
Sbjct: 790 IRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGL 849

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
             P+   +N LI        +D   ++ ND+   GL P   +Y  L+  L ++ +  + 
Sbjct: 850 -KPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLMVQLAQRARLTQV 907



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 103/242 (42%), Gaps = 34/242 (14%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           K + +   V + MR  G+ P+V + S +L+  +R  + +  L+  + +   G+ P    Y
Sbjct: 169 KRVMDGVLVVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIY 228

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + VVKCLC       A+E++ +   NG   S  TYN F       K    A+++ R + E
Sbjct: 229 TVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGE 288

Query: 178 DGL-------C---------------------------VPNMHSYNILIGMFMALNRMDM 203
            GL       C                           VP+  + + LI   + +  ++ 
Sbjct: 289 KGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEG 348

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             E+ N V   G+ P+L  Y  +I+ LC+  K +EA   F  M E+GL P  VT+  L  
Sbjct: 349 AFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILID 408

Query: 264 GL 265
           G 
Sbjct: 409 GF 410



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 10/133 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C+I +   A + L  MI  G+ P+ +TY+  +   C+R ++           
Sbjct: 786 YNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDA--------- 836

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +++ M  RG++PD   F+ ++H      +   +L   N M  +G+ PT +TY S++
Sbjct: 837 -AMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLM 895

Query: 122 KCLCSCGRIEDAE 134
             L    R+   +
Sbjct: 896 VQLAQRARLTQVQ 908



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 65/141 (46%), Gaps = 5/141 (3%)

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
           S+  ++   + Y   K     + +   M++ GL +P + + + L+     + +   V E+
Sbjct: 154 SSSGFDMLIQHYVQNKRVMDGVLVVNLMRDYGL-LPEVRTLSALLNALARIRKFRQVLEL 212

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           ++ +  +G+ PD   YT+++  LCE + + +A +   +    G     VT+     GL +
Sbjct: 213 FDTLVNAGVKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCK 272

Query: 268 SDMLRTWR--RLKKKLDEESI 286
           S   R W    +K+ L E+ +
Sbjct: 273 SK--RVWEAVEVKRSLGEKGL 291


>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 142/289 (49%), Gaps = 13/289 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+C++ R+D A +    M   G  P++VTYN+LLN  C           E  +
Sbjct: 226 VYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCE----------EGMV 275

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ-PQLSLDKLNFMKEKGICPTVATYSS 119
             A ++ + M   G+EPD+ S++ +L  + +A+   +  L  +  M+ KG+C  V +Y++
Sbjct: 276 DEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVV-SYNT 334

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           V+   C   R     EL  EM   G+ P   T+N     +      +   KL  +M +  
Sbjct: 335 VITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMR 394

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           + +P+   Y  ++       ++D+   ++ D+  +G+ PD+ SY  L++G C+  +  +A
Sbjct: 395 V-LPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDA 453

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
              F EM  KGL P +VT++ +  GLI+   +    R+  ++ E   T 
Sbjct: 454 MHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQMMERGFTL 502



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 129/274 (47%), Gaps = 14/274 (5%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           C+ NR++ A      M  +G +P+VV+Y ++++ +C       ++RF++    A KV+  
Sbjct: 130 CRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCN------AKRFDE----AAKVWRR 179

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           +  +G+ PD  +   ++       +  L+ + +  + + G+      Y++++   C  GR
Sbjct: 180 LIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGR 239

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           ++ A ++   M R G  P   TYN            + A++L   M+  G+  P+++SYN
Sbjct: 240 VDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGV-EPDLYSYN 298

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            L+  F   N +D    +  +   +    D+ SY  +I   C+ ++ ++  + F EM  K
Sbjct: 299 ELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMCGK 358

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           G+ P  VTF  L    ++     +   +KK LDE
Sbjct: 359 GIRPDMVTFNILIDAFLREG---STHVVKKLLDE 389



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 124/299 (41%), Gaps = 30/299 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSE------- 54
           Y S I    K   I+ A     +M E       V YN  +  + R + LH +        
Sbjct: 13  YRSQISKLVKAGLINQAIYLFDQMTESNCRVFSVDYNRFIGVLLRHSRLHLAHHYYRRHV 72

Query: 55  -------------RFEKTIRNA---------EKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92
                        RF   + +A           +  +M   G  PD+ +F+  L++  R 
Sbjct: 73  IPRGFSLLPFTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDIWAFNTYLNLLCRQ 132

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
           ++ + +L+  + M  KG  P V +Y+ ++  LC+  R ++A ++   ++  G+ P  +  
Sbjct: 133 NRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKAC 192

Query: 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
                        + A +L   + + G+ V N   YN LI  F  + R+D   +I   + 
Sbjct: 193 VALVVGLCSGGRVDLAYELVVGVIKGGVKV-NSLVYNALIDGFCRMGRVDKAMKIKAFMS 251

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
            +G  PDL +Y +L++  CE+    EA +    M   G+ P   ++  L +G  +++M+
Sbjct: 252 RTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMV 310


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 132/267 (49%), Gaps = 27/267 (10%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF---EKT 59
           T+++ G CK +R+D A +F+ EM + GV PN VTY+ L++G  +   L    RF   EK 
Sbjct: 197 TTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKA 256

Query: 60  -----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  +  A K  +E+R  G+ PDV ++S++++ ++RA Q  
Sbjct: 257 RKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFD 316

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            SL+ L  M+  G+ P V TYS+++  LC   + +DA  LL  M   G  P+  TYN   
Sbjct: 317 ASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVM 376

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    +   ++Y  M +   C P++ +Y+I++        +D   +++  +K S  
Sbjct: 377 DGLCKSGKMDEVHRVYEMMLKS-RCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSRE 435

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYF 243
           GPD  +Y+M+I  LC   K +EAC  +
Sbjct: 436 GPDAAAYSMVITSLCRAGKLEEACGMY 462



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 161/329 (48%), Gaps = 52/329 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  +I G C+ +R+  A + L +M+E  + PNV TY +LLNG+CR              
Sbjct: 90  IYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCR----------SNKT 139

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A +VF EM+  G +P+  ++  ++   SRA +   +L  +   +   +   V T +++
Sbjct: 140 KLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTI 199

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC----------------FFKEYRGRK- 163
           V  LC   R++DA + + EM + GV P+  TY+                 FF+E + RK 
Sbjct: 200 VGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKG 259

Query: 164 ------------DA-------NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
                       DA       + A K   ++++ G+ VP++ +Y++LI  F    + D  
Sbjct: 260 GSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGV-VPDVVTYSMLINTFARAGQFDAS 318

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            E+  D++ +G+ PD+ +Y+ LI+ LC+++K+++A +    M   G  P  VT+ ++  G
Sbjct: 319 LELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDG 378

Query: 265 LIQSDMLRTWRR-----LKKKLDEESITF 288
           L +S  +    R     LK +   + +T+
Sbjct: 379 LCKSGKMDEVHRVYEMMLKSRCSPDVVTY 407



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 106/281 (37%), Gaps = 50/281 (17%)

Query: 20  RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDV 79
           R    +  RGV     TY ++++G+C     + +      +R    V+         P +
Sbjct: 40  RLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALEL---VRELSGVYT--------PTL 88

Query: 80  TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
             ++ ++    RA +   +   L  M E+ I P V TY+ ++  LC   + + A E+  E
Sbjct: 89  FIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQE 148

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
           M RNG                                    C PN  +Y  LI       
Sbjct: 149 MKRNG------------------------------------CKPNPITYGTLIQHLSRAG 172

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
            +D    +  + +   L  D+ + T ++ GLC+  +  +A ++  EM + G+ P +VT+ 
Sbjct: 173 EIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYS 232

Query: 260 TLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
            L  G  Q   L    R+ +  +EE    G   +   +  Y
Sbjct: 233 NLVHGFRQHGEL---DRVIRFFEEEKARKGGSLEAAAYPGY 270



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 17/140 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S++ G CK  ++D   R    M++    P+VVTY++++NG+ +   L           
Sbjct: 372 YNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLD---------- 421

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMK----EKGICPTVATY 117
           +A K+F+ ++     PD  ++S+V+    RA + + +    + M+       IC  +A  
Sbjct: 422 SAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGMEVTVAGDNICRALA-- 479

Query: 118 SSVVKCLCSCGRIEDAEELL 137
             +V  LC   R + A  ++
Sbjct: 480 -GLVAALCDAERTDSARRIV 498


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 137/300 (45%), Gaps = 46/300 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SL+ G C+   I  A + + EM+E G  P++ TYN+++NG+C+  +          I
Sbjct: 291 VYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGN----------I 340

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A  V ++  V+G  PDV +F+ ++  Y +  +   +L  +  M   GI P   TY+SV
Sbjct: 341 SDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSV 400

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF---------FKEYRG---------- 161
           +  LC  G+ ++  E   EM+  G  P+A TYN            +E  G          
Sbjct: 401 LNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGL 460

Query: 162 ----------------RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
                             D +GA  L++++ E G       ++NILIG + +   M M  
Sbjct: 461 VPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSA-TADTFNILIGAYSSKLNMQMAE 519

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +I+ ++   G  PDL +Y +L+ G C+      A  +  EM+ KG +P   TF  +   L
Sbjct: 520 KIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSL 579



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 142/299 (47%), Gaps = 11/299 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+CK + +  A   L + I +G  P+ VTY  L+NG+C           E  + 
Sbjct: 222 YNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCA----------EGDVE 271

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F+E + + ++PD+  ++ ++    R      +L  +N M E G  P + TY+ V+
Sbjct: 272 RALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVI 331

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G I DA  ++ + +  G  P   T+N     Y  R   + A++L  +M   G+ 
Sbjct: 332 NGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGI- 390

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN ++       +   V E + ++   G  P+  +Y +LI   C+  + +EA  
Sbjct: 391 APDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASG 450

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
             V M + GL+P  ++F TL  G  ++  L     L +KLDE+  +  ++  N     Y
Sbjct: 451 VIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAY 509



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 127/284 (44%), Gaps = 12/284 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T  I  +C   R  +A R L  + ERG +   + Y  ++ G+      +          
Sbjct: 48  HTVRIKSFCITGRPHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGY---------- 97

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +FDEM  R + PDV +F+ VLH   +      S   L  + ++G+     T +  +
Sbjct: 98  DARHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWI 157

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  GR+E+A  L+ E +   + P   TYN   +          A +  R+M   G C
Sbjct: 158 RGLCEGGRLEEAVALV-ESMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQG-C 215

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+  +YN +I  +   + +    E+  D    G  PD  +Y  LI+GLC +   + A +
Sbjct: 216 IPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALE 275

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
            F E   K L P  V + +L +GL +  ++    ++  ++ E+ 
Sbjct: 276 LFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDG 319



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 110/251 (43%), Gaps = 12/251 (4%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G  P    YN +++ +   A  H           A KV+  M   G+ PD  + ++ +  
Sbjct: 5   GCPPAAPAYNAIMDALVNTA-YH---------DQAHKVYVRMLSAGVAPDARTHTVRIKS 54

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           +    +P ++L  L  + E+G       Y +VV+ L + G   DA  L  EM+R  V P 
Sbjct: 55  FCITGRPHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPD 114

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             T+N        + D   +  L  ++ + G+ V N  + NI I       R++    + 
Sbjct: 115 VATFNNVLHALCQKGDIMESGALLAKVLKRGMSV-NKFTCNIWIRGLCEGGRLEEAVALV 173

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             +    + PD+ +Y  L+ GLC+  K +EA QY   M+ +G +P   T+ T+  G  + 
Sbjct: 174 ESMDAY-IAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKR 232

Query: 269 DMLRTWRRLKK 279
           DML+    L K
Sbjct: 233 DMLQEATELLK 243



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 25/171 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEK-- 58
           Y  LI  +CKIN+++ A   +  M + G+ P+ +++N L++G CR   L  +   F+K  
Sbjct: 432 YNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLD 491

Query: 59  ----------------------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  ++ AEK+F EM  +G +PD+ ++ +++    +A    
Sbjct: 492 EKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVD 551

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
            +   L  M  KG  P++AT+  V+  L    R+ +A  ++  MVR GV P
Sbjct: 552 RAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVP 602



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 80/174 (45%), Gaps = 1/174 (0%)

Query: 109 GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGA 168
           G  P    Y++++  L +    + A ++   M+  GV P A T+    K +      + A
Sbjct: 5   GCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVA 64

Query: 169 MKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228
           ++L R + E G  V  +    ++ G++   +  D  R +++++    + PD+ ++  ++H
Sbjct: 65  LRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYD-ARHLFDEMLRRDVFPDVATFNNVLH 123

Query: 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
            LC+K    E+     +++++G+   K T     RGL +   L     L + +D
Sbjct: 124 ALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMD 177


>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
          Length = 551

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 139/267 (52%), Gaps = 15/267 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CKI +++ AE  + +M  RGV  N + +N +++G CR+            + 
Sbjct: 286 YGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRK----------NMVD 335

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++   M   GIE DV +++ +     RA++   + + L  M EKG+ P   +Y++++
Sbjct: 336 KALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLI 395

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C+ G + +A  L  EM  NG  PS  TYN     Y  +     A +  ++M++ GL 
Sbjct: 396 SIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKKEMEKKGL- 454

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+++SY  L+       ++D+   ++ ++K  G  P+L +YT LI GL ++ + +EA Q
Sbjct: 455 VPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQ 514

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            +  M+  GL P     + LY  L+ S
Sbjct: 515 LYDNMLGDGLTPD----DALYSALVGS 537



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 135/286 (47%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+  + +    D     L  M   G+EP V TY +L++G+             + I 
Sbjct: 181 YNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSA----------ARDIT 230

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             E VF+EM+ + +  DV  +S V++ Y RA   + + +  +     GI P   TY +++
Sbjct: 231 KVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALI 290

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++E AE L+ +M   GV  +   +N     Y  +   + A+++   M++ G+ 
Sbjct: 291 NGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIE 350

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++++YN L       NRMD  + +   +   G+ P+  SYT LI   C +    EA +
Sbjct: 351 L-DVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARR 409

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            F EM   G  P  VT+  +  G I+   +R   R KK+++++ + 
Sbjct: 410 LFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKKEMEKKGLV 455



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 10/165 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI   C    +  A R   EM   G EP++VTYNV+++G  ++ S+  +ERF+K   
Sbjct: 391 YTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKK--- 447

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                  EM  +G+ PD+ S++ ++H +    +  ++L     MK++G  P +  Y++++
Sbjct: 448 -------EMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALI 500

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
             L   GR E+A +L   M+ +G+ P    Y+         K  N
Sbjct: 501 SGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKKQN 545



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 110/235 (46%), Gaps = 11/235 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ ++I G+C+ N +D A      M + G+E +V TYN L  G+ RRA+          +
Sbjct: 320 VFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGL-RRAN---------RM 369

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+ +   M  +G+ P+  S++ ++ ++        +      M   G  P++ TY+ +
Sbjct: 370 DEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVM 429

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +      G I +AE    EM + G+ P   +Y      +      + A++L+ +MK+ G 
Sbjct: 430 MDGYIKKGSIREAERFKKEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRG- 488

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
             PN+ +Y  LI       R +   ++++++ G GL PD   Y+ L+  L   +K
Sbjct: 489 SKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKK 543



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 4/158 (2%)

Query: 111 CP---TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG 167
           CP   T  + S VV   C  GR+  A +LL EM R+GV  +A  YN     Y   KD + 
Sbjct: 137 CPDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDR 196

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
             ++ + M+ +G+  P + +Y IL+    A   +  V  ++ ++K   L  D+  Y+ +I
Sbjct: 197 VAEMLKVMENEGI-EPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVI 255

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +  C     + A + F E +  G+ P + T+  L  G 
Sbjct: 256 NAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGF 293


>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 638

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 134/255 (52%), Gaps = 13/255 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSL+YGWC+  ++  A+  L +M E G EP++V Y  LL+G      +           
Sbjct: 256 FTSLLYGWCREEKMMEAKYVLVQMKEAGFEPDIVDYTNLLSGYANAGKMA---------- 305

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  +MR RG EP+ T +++++    +  + + ++     M+       V TY+++V
Sbjct: 306 DAYDLLKDMRRRGFEPNATCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALV 365

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+I+    +L +M++ G+ PS  TY      +  ++     ++L  +MK+    
Sbjct: 366 SGFCKWGKIDKCYLVLDDMIKKGLMPSQLTYMHIMAAHEKKEKLIECLELMEKMKQIEYH 425

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YN++I +   L  +     +WN+++G+GL P  D++ ++I+GL  +    EAC 
Sbjct: 426 -PDIGIYNVVIRLACKLGEVKEAVRLWNEMEGNGLSPGADTFVIIINGLTSQGCLLEACD 484

Query: 242 YFVEMIEKGL--LPQ 254
           +F EM+ +GL  +PQ
Sbjct: 485 HFKEMVARGLFSVPQ 499



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 127/266 (47%), Gaps = 12/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI   CK++R++ A +   EM     E +VVTY  L++G C+             I 
Sbjct: 326 YTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGK----------ID 375

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               V D+M  +G+ P   ++  ++  + +  +    L+ +  MK+    P +  Y+ V+
Sbjct: 376 KCYLVLDDMIKKGLMPSQLTYMHIMAAHEKKEKLIECLELMEKMKQIEYHPDIGIYNVVI 435

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
           +  C  G +++A  L  EM  NG+ P A+T+         +     A   +++M   GL 
Sbjct: 436 RLACKLGEVKEAVRLWNEMEGNGLSPGADTFVIIINGLTSQGCLLEACDHFKEMVARGLF 495

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP-DLDSYTMLIHGLCEKQKWKEA 239
            VP   +  +L+   +   +++M +++W+ +   G     + S+T+ IH L  K   KEA
Sbjct: 496 SVPQYGTLKLLLNTLLKDKKLEMAKDVWSCITSKGSCELSVSSWTIWIHALFSKGYEKEA 555

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGL 265
           C Y +EMIE   +PQ  TF  L +GL
Sbjct: 556 CSYCLEMIELEFMPQPDTFAKLMKGL 581



 Score = 44.7 bits (104), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 4/154 (2%)

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           +  +V+   S   ++ A E+L EM   G+ P    + C             A KL+  M+
Sbjct: 187 FVVLVQRFASADMVKKAIEVLDEMPTFGLEPDEYVFGCLLDALCKHGSVKDAAKLFEDMR 246

Query: 177 EDGLCVP-NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
              L  P N+  +  L+  +    +M   + +   +K +G  PD+  YT L+ G     K
Sbjct: 247 ---LRFPVNLRYFTSLLYGWCREEKMMEAKYVLVQMKEAGFEPDIVDYTNLLSGYANAGK 303

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
             +A     +M  +G  P    +  L + L + D
Sbjct: 304 MADAYDLLKDMRRRGFEPNATCYTVLIQALCKVD 337


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 146/301 (48%), Gaps = 26/301 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           +  L++  CK ++I+ A+   GE+ +RG+ P VV++N L+NG C+  +L    R      
Sbjct: 228 FNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMM 287

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  + +A K+F EM  RG+ P+  +F+ +++ +    +  
Sbjct: 288 ENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRAD 347

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           L ++    M  KG+ P V TY++++  LC  G + +A++L+ EM + G+ P   TY    
Sbjct: 348 LGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLI 407

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                  D   A+++ ++M ++G+ + N+ ++  LI  F    ++        ++  +G+
Sbjct: 408 DGCCKEGDLESALEIRKEMVKEGIELDNV-AFTALISGFCREGQVIEAERTLREMLEAGI 466

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD  +YTM+IHG C+K   K   +   EM   G +P  VT+  L  GL +   ++    
Sbjct: 467 KPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANM 526

Query: 277 L 277
           L
Sbjct: 527 L 527



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 136/276 (49%), Gaps = 11/276 (3%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           K+N    A  F  E+++ G  P+V  +NVL++ +C+          E  I  A+ +F E+
Sbjct: 202 KLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCK----------EHKINEAQLLFGEI 251

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
             RG+ P V SF+ +++ Y ++           FM E  + P V TYS ++  LC  G++
Sbjct: 252 GKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQL 311

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           +DA +L  EM   G+ P+  T+      +     A+  M++Y+QM   G+  P++ +YN 
Sbjct: 312 DDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGV-KPDVITYNT 370

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           LI     +  +   +++  ++   GL PD  +YTMLI G C++   + A +   EM+++G
Sbjct: 371 LINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEG 430

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +    V F  L  G  +   +    R  +++ E  I
Sbjct: 431 IELDNVAFTALISGFCREGQVIEAERTLREMLEAGI 466



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 141/302 (46%), Gaps = 46/302 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G+CK   +D   R    M+E  V P+V TY+VL+NG+C+          E  + 
Sbjct: 263 FNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCK----------EGQLD 312

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+F EM  RG+ P+  +F+ +++ +    +  L ++    M  KG+ P V TY++++
Sbjct: 313 DANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLI 372

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G + +A++L+ EM + G+ P   TY           D   A+++ ++M ++G+ 
Sbjct: 373 NGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIE 432

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM---------------- 225
           + N+ ++  LI  F    ++        ++  +G+ PD  +YTM                
Sbjct: 433 LDNV-AFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFK 491

Query: 226 -------------------LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
                              L++GLC++ + K A      M+  G++P  +T+  L    +
Sbjct: 492 LLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLERTL 551

Query: 267 QS 268
           Q+
Sbjct: 552 QA 553



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 120/238 (50%), Gaps = 13/238 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G C   R D+      +M+ +GV+P+V+TYN L+NG+C+   L          R
Sbjct: 333 FTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDL----------R 382

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+K+  EM  RG++PD  ++++++    +    + +L+    M ++GI      +++++
Sbjct: 383 EAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALI 442

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++ +AE  L EM+  G+ P   TY      +  + D     KL ++M+ DG  
Sbjct: 443 SGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGH- 501

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           VP + +YN+L+       +M     + + +   G+ PD  +Y +L+      Q WK+ 
Sbjct: 502 VPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLER--TLQAWKQG 557



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 18/191 (9%)

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN------ 166
           ++ +Y ++   LC+   + +A+ LL  +V      SA +      E RG   +N      
Sbjct: 102 SIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSASSVFTSVLEARGTHQSNLVFSVL 161

Query: 167 -----------GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                       A++ +R +++  L +P  HS   L    M LN        + ++   G
Sbjct: 162 MNAYTDSGYFSDAIQCFRLVRKHNLQIP-FHSCGYLFDRLMKLNLTSPAWAFYEEILDCG 220

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
             PD+  + +L+H LC++ K  EA   F E+ ++GL P  V+F TL  G  +S  L    
Sbjct: 221 YPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGF 280

Query: 276 RLKKKLDEESI 286
           RLK+ + E  +
Sbjct: 281 RLKRFMMENRV 291


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 134/276 (48%), Gaps = 13/276 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G C  +RI  A      M + G  PN +TY  L+ G+CR  ++  + +  + + 
Sbjct: 169 YTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEML 228

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N   ++        +P V S+SI++    +  +   + D    MK +G+ PTV +Y+S++
Sbjct: 229 NDSSLYG----INFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM 284

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                    E+A+ L  EMV  GV P+  T+N              A  L   M + G+ 
Sbjct: 285 --------WEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGI- 335

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN+ +YN LI  F  +  ++  RE++  +   G  PD+  YT+LI+G C+  K +EA +
Sbjct: 336 VPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMK 395

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            +  M++ G  P   T+  L  GL Q   +   ++L
Sbjct: 396 LYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKL 431



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 133/270 (49%), Gaps = 11/270 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI   CK  ++  A+  L  MI+RG+ PN++TYN L+ G C    L+          
Sbjct: 307 FNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLN---------- 356

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F  M  +G EPDV  ++++++ Y +  + + ++   N M + G  P V TY +++
Sbjct: 357 SARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALL 416

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G++ DA++L G M   G+      Y  F            AM+L+ ++K   + 
Sbjct: 417 TGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIK 476

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++  +N LI       +++   E++  +    L PD+ +Y ++IH  C   +  +A  
Sbjct: 477 L-DIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANI 535

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
            F +M + G  P K+T+ TL RG  +S  L
Sbjct: 536 LFQKMEKNGCTPDKITYATLIRGFFESKKL 565



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 130/285 (45%), Gaps = 19/285 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I   CK  R D A     EM  +G+ P V++Y  L+                    
Sbjct: 245 YSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM------------------WE 286

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++F+EM  +G++P+V +F++++ V  +  +   + D L  M ++GI P + TY+S++
Sbjct: 287 EAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLI 346

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G +  A EL   M   G  P    Y      Y        AMKLY  M + G  
Sbjct: 347 EGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGK- 405

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  L+       ++   ++++  +K  G+  DL  Y + ++GLC+     EA +
Sbjct: 406 RPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAME 465

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F ++    +      F  L  GL ++  L T   L +KL +E +
Sbjct: 466 LFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEEL 510



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 126/265 (47%), Gaps = 25/265 (9%)

Query: 4   SLIYGWCKINRID--MAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           S+    CK   I    A +F   M+     P + ++  LL+G+ +    H S+ F     
Sbjct: 64  SMFLHNCKTGNITAIQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIK--HYSQVF----- 116

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               ++++MR+ GI PD  + +I+L+     ++    L  +  +  +G  P + TY++++
Sbjct: 117 ---YLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLI 173

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC   RI  A  L   M + G  P+A TY    K      + + A+KL+++M  D   
Sbjct: 174 KGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSL 233

Query: 182 V-----PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
                 P + SY+I+I       R D  R+++ ++K  G+ P + SYT L+        W
Sbjct: 234 YGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM--------W 285

Query: 237 KEACQYFVEMIEKGLLPQKVTFETL 261
           +EA + F EM+ +G+ P  VTF  L
Sbjct: 286 EEAKRLFNEMVNQGVQPNVVTFNVL 310



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 134/287 (46%), Gaps = 21/287 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSL++        + A+R   EM+ +GV+PNVVT+NVL++ +C+          E  + 
Sbjct: 280 YTSLMW--------EEAKRLFNEMVNQGVQPNVVTFNVLIDVLCK----------EGKVI 321

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ + + M  RGI P++ +++ ++  +        + +    M  KG  P V  Y+ ++
Sbjct: 322 EAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLI 381

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   ++E+A +L   M++ G  P  +TY               A KL+  MK  G  
Sbjct: 382 NGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYG-- 439

Query: 182 VP-NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           +P +++ Y I +        +    E++N +K   +  D++ +  LI GLC+  K + A 
Sbjct: 440 IPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAW 499

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           + F ++ ++ L P  VT+  +     +   +     L +K+++   T
Sbjct: 500 ELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCT 546



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 7/209 (3%)

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIE--DAEELLGEMVRNG 144
           H  S  H   L++   NF         ++ +       C  G I    A +    M+ + 
Sbjct: 36  HFSSAVHHKSLNVSPQNFNTPISFQQQLSMFLHN----CKTGNITAIQAFQFFHLMMYSN 91

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
             P   ++          K  +    LY QM+  G+  P+  + NIL+     +NR+   
Sbjct: 92  PTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGIS-PDCCTLNILLNCLCNVNRVGEG 150

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             +   +   G  PD+ +YT LI GLC + +  +A   F  M + G  P  +T+ TL +G
Sbjct: 151 LAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKG 210

Query: 265 LIQSDMLRTWRRLKKKLDEESITFGSEFQ 293
           L ++  +    +L +++  +S  +G  F+
Sbjct: 211 LCRTGNISIALKLHQEMLNDSSLYGINFK 239



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/201 (19%), Positives = 89/201 (44%), Gaps = 25/201 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G+CK ++++ A +    M++ G  P+V TY  LL G+ +   +  +++    ++
Sbjct: 377 YTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMK 436

Query: 62  -------------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     A ++F++++   I+ D+  F+ ++    +A + +
Sbjct: 437 VYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLE 496

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + +    + ++ + P V TY+ ++   C  G++  A  L  +M +NG  P   TY    
Sbjct: 497 TAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLI 556

Query: 157 KEYRGRKDANGAMKLYRQMKE 177
           + +   K     ++L   M +
Sbjct: 557 RGFFESKKLEKVVELLHMMVQ 577



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 69/145 (47%), Gaps = 10/145 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y   + G CK   +  A     ++    ++ ++  +N L++G+C+   L          
Sbjct: 446 IYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKL---------- 495

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++F+++    ++PDV +++I++H + R  Q   +      M++ G  P   TY+++
Sbjct: 496 ETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATL 555

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGV 145
           ++      ++E   ELL  MV+  V
Sbjct: 556 IRGFFESKKLEKVVELLHMMVQRDV 580


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 139/264 (52%), Gaps = 13/264 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           +SL+ G  K  +++ A   +  + E GV PN+  YN L++ +C+           +    
Sbjct: 336 SSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCK----------GRNFDE 385

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           AE +FD M   G+ P+  ++SI++ ++ R  +   +L  L  M + G+ P+V  Y+S++ 
Sbjct: 386 AELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLIN 445

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C  G I  AE L+ EM+   + P+  TY      Y  +   N A++LY +M   G+ V
Sbjct: 446 GHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGI-V 504

Query: 183 PNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           P+++++  L+ G+F A    D V+ ++ ++    + P+  +Y ++I G CE+    +A +
Sbjct: 505 PSIYTFTTLLSGLFRAGLIRDAVK-LFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFE 563

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
           +  EMIEKG++P   ++  L  GL
Sbjct: 564 FLNEMIEKGIVPDTYSYRPLIHGL 587



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 135/268 (50%), Gaps = 21/268 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L++G+C+  +++ A     +M  RGV+ ++V Y VL++G     SL   +R      
Sbjct: 615 YTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDG-----SLKHKDR------ 663

Query: 62  NAEKVF----DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
              KVF     EM  RG++PD   ++ ++   S+    + +    + M  +G  P   TY
Sbjct: 664 ---KVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTY 720

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMK 176
           ++V+  LC  G + +AE L  +M      P+  TY CF     +G  D   A++L+  + 
Sbjct: 721 TAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAIL 780

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           + GL + N  +YN+LI  F    RM+   E+   + G G+ PD  +YT +I  LC +   
Sbjct: 781 K-GL-LANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDV 838

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRG 264
           K+A + +  M EKG+ P +V + TL  G
Sbjct: 839 KKAIELWNSMTEKGIRPDRVAYNTLIHG 866



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 147/326 (45%), Gaps = 37/326 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT +I   C++  +  A+  + +M   G + N+V YNVL++G+C++  +  +   +K +
Sbjct: 229 IYTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDL 288

Query: 61  RNAE-------------------------KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
              E                         ++ DEM      P   + S ++    +  + 
Sbjct: 289 AGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKV 348

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + +L+ +  + E G+ P +  Y++++  LC     ++AE L   M + G+CP+  TY+  
Sbjct: 349 EEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSIL 408

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +  R   + A+    +M + GL  P+++ YN LI        +     +  ++    
Sbjct: 409 IDMFCRRGKLDTALSFLGEMIDMGL-KPSVYPYNSLINGHCKFGDISAAESLMAEMINKK 467

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           L P + +YT L+ G C K K  +A + + EM  KG++P   TF TL  GL ++ ++R   
Sbjct: 468 LEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIR--- 524

Query: 276 RLKKKLDEESITFGSEFQNYHFKPYR 301
                   +++   +E   ++ KP R
Sbjct: 525 --------DAVKLFTEMAEWNVKPNR 542



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 132/306 (43%), Gaps = 28/306 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y SLI G CK   I  AE  + EMI + +EP VVTY  L+ G C +  ++ + R      
Sbjct: 440 YNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMT 499

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  IR+A K+F EM    ++P+  ++++++  Y       
Sbjct: 500 GKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMS 559

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET-YNCF 155
            + + LN M EKGI P   +Y  ++  LC  G+  +A+  + + +  G C   E  Y   
Sbjct: 560 KAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFV-DGLHKGNCELNEICYTGL 618

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +        A+ + + M   G+ + ++  Y +LI   +      +   +  ++   G
Sbjct: 619 LHGFCREGKLEEALSVCQDMGLRGVDL-DLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRG 677

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           L PD   YT +I    +   +KEA   +  MI +G +P +VT+  +  GL ++  +    
Sbjct: 678 LKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAE 737

Query: 276 RLKKKL 281
            L  K+
Sbjct: 738 ILCSKM 743



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 132/311 (42%), Gaps = 28/311 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  +I G+C+   +  A  FL EMIE+G+ P+  +Y  L++G+C       ++ F     
Sbjct: 545 YNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLH 604

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  +  A  V  +M +RG++ D+  + +++    +    +
Sbjct: 605 KGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRK 664

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           + L  L  M ++G+ P    Y+S++      G  ++A  +   M+  G  P+  TY    
Sbjct: 665 VFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVI 724

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM-ALNRMDMVREIWNDVKGSG 215
                    N A  L  +M+  G  VPN  +Y   + +    +  M    E+ N +   G
Sbjct: 725 NGLCKAGFVNEAEILCSKMRP-GNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAIL-KG 782

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           L  +  +Y MLI G C + + +EA +    MI  G+ P  +T+ T+   L + + ++   
Sbjct: 783 LLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAI 842

Query: 276 RLKKKLDEESI 286
            L   + E+ I
Sbjct: 843 ELWNSMTEKGI 853



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 11/222 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTS+I    K      A      MI  G  PN VTY  ++NG+C+   ++ +E     +
Sbjct: 684 IYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKM 743

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R    V          P+  ++   L + ++         +L+    KG+    ATY+ +
Sbjct: 744 RPGNSV----------PNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLLANTATYNML 793

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C  GR+E+A EL+  M+ +GV P   TY     E   R D   A++L+  M E G+
Sbjct: 794 IRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGI 853

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS 222
             P+  +YN LI        M    E+ N++   GL P+ ++
Sbjct: 854 -RPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTET 894



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 2/207 (0%)

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEK-GICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           F +++  Y R+ +    +     M  K  + P V T S+++  L        A EL  +M
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDM 218

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
           +  G+ P    Y    +     KD + A ++  QM+  G C  N+  YN+LI       +
Sbjct: 219 INVGIRPDVYIYTGVIRSLCELKDLSRAKEMIVQMEATG-CDVNIVPYNVLIDGLCKKQK 277

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           +     I  D+ G  L PD+ +Y  L+ GLC+ Q+++   +   EM+     P +    +
Sbjct: 278 VWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSS 337

Query: 261 LYRGLIQSDMLRTWRRLKKKLDEESIT 287
           L  GL +   +     L K++ E  ++
Sbjct: 338 LVEGLRKRGKVEEALNLVKRVAEFGVS 364



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 10/120 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C+  R++ A   +  MI  GV P+ +TY  +++ +CRR            ++
Sbjct: 790 YNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRR----------NDVK 839

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++++ M  +GI PD  +++ ++H    A +   + +  N M  +G+ P   T  + +
Sbjct: 840 KAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTETSETTI 899



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 19/211 (9%)

Query: 73  RGIEPDVTSFSIVLHVYSRAH-----------------QPQLSLDKLNFMKEKGICPTVA 115
           RG +    SF I++H   +A+                 +P    D L    EK    + +
Sbjct: 98  RGFDHSTASFCILIHALVQANLFWPASSLLQTLLLRALKPSEVFDALFSCYEKCKLSSSS 157

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMV-RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
           ++  +++      R+ D   +   M+ +  + P   T +         +    AM+L+  
Sbjct: 158 SFDLLIQHYVRSRRVLDGVLVFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDD 217

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M   G+  P+++ Y  +I     L  +   +E+   ++ +G   ++  Y +LI GLC+KQ
Sbjct: 218 MINVGI-RPDVYIYTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQ 276

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           K  EA     ++  K L P  VT+ TL  GL
Sbjct: 277 KVWEAVGIKKDLAGKELKPDVVTYCTLVCGL 307


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 136/293 (46%), Gaps = 43/293 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+ K      A +FL EM++    P VVTY  +++G+C+      +ER     
Sbjct: 79  IYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCK------AER----T 128

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R+A K+ DEMR +G  P++ ++++++       +   +   L  M  +G  P V TY+S 
Sbjct: 129 RDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSF 188

Query: 121 VKCLCSCGRIEDAEELLGEM-----------VRNGVC---------------------PS 148
           +K LC C R+++A + L  M           V NG+C                     P 
Sbjct: 189 IKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPD 248

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             TY+     +    +   AM L   M + G C PNM +YN L+G    L  +    ++ 
Sbjct: 249 VVTYSSLIDGFCKGGEVERAMGLLDSMLKLG-CRPNMVAYNSLLGALHRLGHIGKAEDML 307

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            +++  G  PD+ SY   I GLC+ ++ K+A   F  M+E+G  P   ++  L
Sbjct: 308 VEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSML 360



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 142/318 (44%), Gaps = 38/318 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR-----RA-------- 48
           YT++I G CK   +D A R L  M  RG  P+VVTY+ L++G C+     RA        
Sbjct: 217 YTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSML 276

Query: 49  ------------SLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                       SL  +      I  AE +  EM  RG  PDV S++  +    +A + +
Sbjct: 277 KLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVK 336

Query: 97  LSLDKLNFMKEKGICPTVATYSSVV----------KCLCSCGRIEDAEELLGEMVRNGVC 146
            +    + M E+G  P  ++YS ++            LC  GR ++A  L  +++   +C
Sbjct: 337 KAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKIC 396

Query: 147 -PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P    YN     +  R+  + A+++++QM E   C  N+ ++NIL+      +R+    
Sbjct: 397 EPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCC--NVVTWNILVHGLCVDDRLSDAE 454

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            +   +   G  PD  +Y  L+  +C+  K   A + F E ++ G +P  VT+  L  GL
Sbjct: 455 TMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGL 514

Query: 266 IQSDMLRTWRRLKKKLDE 283
           +  +M      L  KL E
Sbjct: 515 VHENMAEEAYLLFTKLVE 532



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 122/257 (47%), Gaps = 39/257 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S I G CK +R+D A +FL  M    V P+VV+Y  ++NG+C+   L           
Sbjct: 185 YNSFIKGLCKCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLD---------- 231

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++ D M  RG  PDV ++S ++  + +  + + ++  L+ M + G  P +  Y+S++
Sbjct: 232 SASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLL 291

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G I  AE++L EM R G  P   +YN         +    A  ++ +M E G C
Sbjct: 292 GALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERG-C 350

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  SY++LI                          D+  YT+L+ GLC+  ++ EAC 
Sbjct: 351 TPNASSYSMLI-------------------------VDILLYTVLLDGLCKGGRFDEACA 385

Query: 242 YFVEMIEKGLLPQKVTF 258
            F +++++ +    V F
Sbjct: 386 LFSKVLDEKICEPDVFF 402



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 124/266 (46%), Gaps = 14/266 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+    + +R D A     EMI++  +P+  T+ +LL G+CR      S + EK   
Sbjct: 10  YNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCR------SNQLEK--- 60

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+   M+  G  PD   ++ ++  YS+A     +   L  M +    PTV TY+++V
Sbjct: 61  -ARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIV 119

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R  DA +LL EM   G  P+  TYN   +     +  + A K+  +M   G  
Sbjct: 120 DGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGY- 178

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN  I      +R+D  R+    +    + PD+ SYT +I+GLC+      A +
Sbjct: 179 FPDVVTYNSFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASR 235

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
               M  +G  P  VT+ +L  G  +
Sbjct: 236 MLDHMSNRGCTPDVVTYSSLIDGFCK 261



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 3/209 (1%)

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           G E +V +++ +L   +R H+   +      M +K   P   T++ +++ LC   ++E A
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY-NILI 192
            +LLG M   G  P    YN     Y   KD   A K   +M ++  C+P + +Y NI+ 
Sbjct: 62  RKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNH-CLPTVVTYTNIVD 120

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
           G+  A    D V+ + ++++  G  P++ +Y +++ GLCE++K  EA +   EM  +G  
Sbjct: 121 GLCKAERTRDAVK-LLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYF 179

Query: 253 PQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           P  VT+ +  +GL + D +   R+   ++
Sbjct: 180 PDVVTYNSFIKGLCKCDRVDEARKFLARM 208



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 12/178 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGV-EPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           +YT L+ G CK  R D A     ++++  + EP+V  YNV+L+  C+R          + 
Sbjct: 366 LYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKR----------RQ 415

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           I  A ++  +M  +    +V +++I++H      +   +   L  M ++G  P   TY +
Sbjct: 416 IDKALQIHKQMLEKNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGT 474

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           +V  +C CG+   A EL  E V+ G  P   TY+           A  A  L+ ++ E
Sbjct: 475 LVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVE 532



 Score = 39.7 bits (91), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +Y  L+  L  + +  +A   F EMI+K   P   TF  L RGL +S+ L   R+L  ++
Sbjct: 9   TYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRM 68

Query: 282 DE 283
            E
Sbjct: 69  KE 70


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 132/267 (49%), Gaps = 27/267 (10%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF---EKT 59
           T+++ G CK +R+D A +F+ EM + GV PN VTY+ L++G  +   L    RF   EK 
Sbjct: 197 TTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKA 256

Query: 60  -----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  +  A K  +E+R  G+ PDV ++S++++ ++RA Q  
Sbjct: 257 RKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFD 316

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            SL+ L  M+  G+ P V TYS+++  LC   + +DA  LL  M   G  P+  TYN   
Sbjct: 317 ASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVM 376

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    +   ++Y  M +   C P++ +Y+I++        +D   +++  +K S  
Sbjct: 377 DGLCKSGKMDEVHRVYEMMLKS-RCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSRE 435

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYF 243
           GPD  +Y+M+I  LC   K +EAC  +
Sbjct: 436 GPDAAAYSMVITSLCRAGKLEEACGMY 462



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 161/329 (48%), Gaps = 52/329 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  +I G C+ +R+  A + L +M+E  + PNV TY +LLNG+CR              
Sbjct: 90  IYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCR----------SNKT 139

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A +VF EM+  G +P+  ++  ++   SRA +   +L  +   +   +   V T +++
Sbjct: 140 KLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTI 199

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC----------------FFKEYRGRK- 163
           V  LC   R++DA + + EM + GV P+  TY+                 FF+E + RK 
Sbjct: 200 VGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKG 259

Query: 164 ------------DA-------NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
                       DA       + A K   ++++ G+ VP++ +Y++LI  F    + D  
Sbjct: 260 GSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGV-VPDVVTYSMLINTFARAGQFDAS 318

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            E+  D++ +G+ PD+ +Y+ LI+ LC+++K+++A +    M   G  P  VT+ ++  G
Sbjct: 319 LELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDG 378

Query: 265 LIQSDMLRTWRR-----LKKKLDEESITF 288
           L +S  +    R     LK +   + +T+
Sbjct: 379 LCKSGKMDEVHRVYEMMLKSRCSPDVVTY 407



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 128/286 (44%), Gaps = 18/286 (6%)

Query: 17  MAERFLG-EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI 75
           MA + L   ++E G + +   + +L   + RR+      +F + +R    +F  +  RG+
Sbjct: 1   MAAKLLERSVVEAGAKVDSQAFTLLATKLFRRS------KFSEVVR----LFTLLASRGV 50

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGI-CPTVATYSSVVKCLCSCGRIEDAE 134
               T++ +V+     A     +L+ +  +   G+  PTV  Y+ ++  LC   R+ DA 
Sbjct: 51  VYGETTYKLVVDGLCGAGMANQALELVRELS--GVYTPTVFIYNGIITGLCRASRVMDAY 108

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           ++L +MV   + P+  TY               A +++++MK +G C PN  +Y  LI  
Sbjct: 109 KVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNG-CKPNPITYGTLIQH 167

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                 +D    +  + +   L  D+ + T ++ GLC+  +  +A ++  EM + G+ P 
Sbjct: 168 LSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPN 227

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
           +VT+  L  G  Q   L    R+ +  +EE    G   +   +  Y
Sbjct: 228 EVTYSNLVHGFRQHGEL---DRVIRFFEEEKARKGGSLEAAAYPGY 270



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 17/140 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S++ G CK  ++D   R    M++    P+VVTY++++NG+ +   L           
Sbjct: 372 YNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLD---------- 421

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMK----EKGICPTVATY 117
           +A K+F+ ++     PD  ++S+V+    RA + + +    + M+       IC  +A  
Sbjct: 422 SAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGMEVTVAGDNICRALA-- 479

Query: 118 SSVVKCLCSCGRIEDAEELL 137
             +V  LC   R + A  ++
Sbjct: 480 -GLVAALCDAKRTDSARRIV 498


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 136/264 (51%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I G+ K   +D       EM+++ + PNVVTYN ++  +C+           +T+ 
Sbjct: 91  YSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCK----------AQTVD 140

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V   M   G+ PD  +++ ++H +  + QP+ ++  L  M+  G+ P V TY+S++
Sbjct: 141 KAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLM 200

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A ++   M + G+ P   TY    + Y  +        L   M  +G+ 
Sbjct: 201 DYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 260

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN + ++IL+  +    +++    +++ ++  GL P+  +Y  +I  LC+  + ++A  
Sbjct: 261 -PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAML 319

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
           YF +MI++GL P  + + +L  GL
Sbjct: 320 YFEQMIDEGLSPGNIVYNSLIHGL 343



 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 139/292 (47%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           Y SL+   CK  R   A +    M +RG++P + TY  LL G   + +L           
Sbjct: 196 YNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 255

Query: 51  ----HPSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
               HP+             ++ +  A  VF +MR +G+ P+  ++  V+ +  ++ + +
Sbjct: 256 RNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVE 315

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++     M ++G+ P    Y+S++  LC+C + E AEEL+ EM+  G+C +   +N   
Sbjct: 316 DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII 375

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +        + KL+  M   G+  P++ +Y+ LI  +    +MD   ++   +   G+
Sbjct: 376 DSHCKEGRVIESEKLFDLMVRIGV-KPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 434

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            PD  +Y+ LI+G C+  + K+A   F EM   G+ P  +T+  + +GL Q+
Sbjct: 435 KPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQT 486



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 137/295 (46%), Gaps = 11/295 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SLI+G C  N+ + AE  + EM++RG+  N + +N +++  C+          E  +
Sbjct: 335 VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCK----------EGRV 384

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             +EK+FD M   G++PD+ ++S ++  Y  A +   +   L  M   G+ P   TYS++
Sbjct: 385 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTL 444

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C   R++DA  L  EM  +GV P   TYN   +     +    A +LY  + + G 
Sbjct: 445 INGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGR 504

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +  + +YNI++         D    ++ ++    L  +  ++ ++I  L +  +  EA 
Sbjct: 505 QL-ELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAK 563

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
             FV     GL+P   T+  +   +I   +L    +L   +++   T  S   N+
Sbjct: 564 DLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNF 618



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 131/280 (46%), Gaps = 19/280 (6%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIE- 76
           A     E++ RG+ P+V +YN+LLNG+C           E   + A ++   M   G + 
Sbjct: 36  ARHVFDELLRRGI-PDVFSYNILLNGLCD----------ENRSQEALELLHIMADDGGDC 84

Query: 77  -PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
            PDV S+S V++ + +      +    N M ++ I P V TY+S++  LC    ++ A E
Sbjct: 85  PPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAME 144

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           +L  MV++GV P   TYN     +        A+   ++M+ DG+  P++ +YN L+   
Sbjct: 145 VLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGV-EPDVVTYNSLMDYL 203

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
               R    R+I++ +   GL P++ +Y  L+ G   K    E       M+  G+ P  
Sbjct: 204 CKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNH 263

Query: 256 VTFETLY-----RGLIQSDMLRTWRRLKKKLDEESITFGS 290
             F  L      +  ++  ML   +  ++ L+  ++T+G+
Sbjct: 264 YVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGA 303



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 140/281 (49%), Gaps = 15/281 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +++ L+  + K  +++ A     +M ++G+ PN VTY  ++  +C+      S R E  +
Sbjct: 265 VFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCK------SGRVEDAM 318

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              E++ DE    G+ P    ++ ++H     ++ + + + +  M ++GIC     ++S+
Sbjct: 319 LYFEQMIDE----GLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSI 374

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  GR+ ++E+L   MVR GV P   TY+     Y      + A KL   M   G+
Sbjct: 375 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 434

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  +Y+ LI  +  ++RM     ++ +++ SG+ PD+ +Y +++ GL + ++   A 
Sbjct: 435 -KPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 493

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL----IQSDMLRTWRRL 277
           + +V + + G   +  T+  +  GL    +  D LR ++ L
Sbjct: 494 ELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNL 534



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 2/157 (1%)

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL-CVPNMHSYN 189
           EDA  +  E++R G+ P   +YN           +  A++L   M +DG  C P++ SY+
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            +I  F     +D     +N++    + P++ +Y  +I  LC+ Q   +A +    M++ 
Sbjct: 93  TVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 152

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           G++P  +T+ ++  G   S   +      KK+  + +
Sbjct: 153 GVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGV 189


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 138/285 (48%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L++G CK+ R   A R L EM E+G  PN+VTY+ LL+  CR               
Sbjct: 354 YNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWD---------- 403

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  + D+M  +G   +   ++ +++   +  +   ++  +  MK +G  P + TY++++
Sbjct: 404 DARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTII 463

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+  ++++AE + G ++  GV  +  TYN               ++L  +M   G C
Sbjct: 464 YHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHG-C 522

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++ SYN LI        +D    +  ++   G+ P+  SY MLI+ LC+  K ++A +
Sbjct: 523 PLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALE 582

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM+ +GL P  VT+ TL  GL +         L +KL  E++
Sbjct: 583 LSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENV 627



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 146/319 (45%), Gaps = 28/319 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           +  ++ G C +  +  A R +  M+  G  P+VVTY  LL G+CR      +        
Sbjct: 253 FNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVP 312

Query: 57  ----------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLD 100
                           E  +  A ++++ M  +G  PDV +++I++H   +  +   ++ 
Sbjct: 313 EVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVR 372

Query: 101 KLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160
            L+ M+EKG  P + TYS+++   C  G  +DA  +L +M   G   +++ YN       
Sbjct: 373 MLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALG 432

Query: 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
                + AM+L ++MK  G C P++ +YN +I      ++MD    I+ ++   G+  + 
Sbjct: 433 KDGKLDEAMRLVQEMKSQG-CKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANG 491

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI-QSDMLRTWRRLKK 279
            +Y  LIH L    +W+E  +   EM+  G     V++  L + L  + ++ R+   L  
Sbjct: 492 ITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLL-- 549

Query: 280 KLDEESITFGSEFQNYHFK 298
              EE +T G +  N+ + 
Sbjct: 550 ---EEMMTKGIKPNNFSYN 565



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 127/312 (40%), Gaps = 42/312 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I+       +  A   L EM+  G   +V T+N ++ G+C              +
Sbjct: 217 LYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCGLGH----------V 266

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ-----------PQLSLDKLN------ 103
           R A ++ D M + G  P V ++  +L    R  Q           P++++  LN      
Sbjct: 267 REAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNVVMLNTVIRGC 326

Query: 104 --------------FMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
                          M  KG  P V TY+ ++  LC  GR   A  +L EM   G  P+ 
Sbjct: 327 LAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNI 386

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
            TY+     +      + A  +  QM   G  + N   YN +I       ++D    +  
Sbjct: 387 VTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSM-NSQGYNGIIYALGKDGKLDEAMRLVQ 445

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           ++K  G  PD+ +Y  +I+ LC   +  EA   F  ++E+G++   +T+ TL   L+ S 
Sbjct: 446 EMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSG 505

Query: 270 MLRTWRRLKKKL 281
             +   RL  ++
Sbjct: 506 RWQEGLRLANEM 517



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 121/266 (45%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +IY   K  ++D A R + EM  +G +P++ TYN ++  +C              + 
Sbjct: 424 YNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCN----------NDQMD 473

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE +F  +   G+  +  +++ ++H    + + Q  L   N M   G    V +Y+ ++
Sbjct: 474 EAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLI 533

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC  G ++ +  LL EM+  G+ P+  +YN    E         A++L ++M   GL 
Sbjct: 534 KALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGL- 592

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN LI     +        +   +    + PD+ +Y +LI   C+ +   +A  
Sbjct: 593 TPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASM 652

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
              + +  G++P + T+  + +  ++
Sbjct: 653 LLDKAVSGGIVPNERTWGMMVQNFVR 678



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 121/312 (38%), Gaps = 47/312 (15%)

Query: 18  AERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIE 76
           A   L +M  R  V P+  +YN +L+ + R A  H          +A  ++  M    + 
Sbjct: 128 ALHLLDQMPRRFAVTPSFRSYNAVLSTLAR-ADCH---------ADALLLYRRMLRDRVP 177

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           P   +F +      R  + + +L  L  M   G  P    Y +V+  L + G + +A  L
Sbjct: 178 PTTFTFGVAARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATL 237

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY-------- 188
           L EM+  G      T+N       G      A +L  +M   G C P++ +Y        
Sbjct: 238 LDEMLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHG-CTPSVVTYGFLLRGLC 296

Query: 189 -----------------------NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
                                  N +I   +A  ++    E++  +   G  PD+ +Y +
Sbjct: 297 RTRQADEAYAMLGRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNI 356

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           L+HGLC+  +   A +   EM EKG  P  VT+ TL     ++ M   W   +  LD+ S
Sbjct: 357 LMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGM---WDDARAMLDQMS 413

Query: 286 IT-FGSEFQNYH 296
              F    Q Y+
Sbjct: 414 AKGFSMNSQGYN 425


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 142/283 (50%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK+ +   A + L  +  + V+PNVV YN +++ +C+           K + 
Sbjct: 146 YGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKV----------KLVN 195

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++ EM   GI PDV ++S ++  +    + + ++D  N M  + I P V T++ +V
Sbjct: 196 EAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILV 255

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++++ + +   M++ G+ P+  TY      Y   K  N A  ++  M + G+ 
Sbjct: 256 DGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVN 315

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  SYNI+I  F  + ++D    ++  +    + P++ +YT LI GLC+  K   A +
Sbjct: 316 -PDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALK 374

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
              EM ++G+ P  +T+ ++   L ++  +     L  KL ++
Sbjct: 375 LVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQ 417



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 121/268 (45%), Gaps = 38/268 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ G+CK  ++   +     M+++G++PNVVTY  L++G C            K + 
Sbjct: 251 FNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYC----------LVKQVN 300

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F+ M   G+ PD  S++I+++ + +  +   +++    M  K I P V TY+S++
Sbjct: 301 KANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLI 360

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+I  A +L+ EM   GV P   TY+            + A+ L  ++K+    
Sbjct: 361 DGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKD---- 416

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
                                   +++ D+   G   D+ +YT++I G C K  + EA  
Sbjct: 417 ------------------------QVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALA 452

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              +M + G +P   T+E +   L + D
Sbjct: 453 LLSKMEDNGRIPDAKTYEIIILSLFKKD 480



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 136/292 (46%), Gaps = 19/292 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++I   CK+  ++ A     EM+  G+ P+VVTY+ L++G      L          
Sbjct: 180 MYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKL---------- 229

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           ++A  +F++M +  I+PDV +F+I++  + +  + +        M ++GI P V TY S+
Sbjct: 230 KDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSL 289

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C   ++  A  +   M + GV P  ++YN     +   K  + AM L+++M    +
Sbjct: 290 MDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNI 349

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +PN+ +Y  LI       ++    ++ +++   G+ PD+ +Y+ ++  LC+  +  +A 
Sbjct: 350 -IPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAI 408

Query: 241 --------QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
                   Q F ++  KG       +  + +G     +      L  K+++ 
Sbjct: 409 ALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDN 460



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 136/323 (42%), Gaps = 39/323 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLN------------------- 42
           +  ++    KIN    A     +M  +G+  N+VT N+L+N                   
Sbjct: 63  FGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFSQLGQNPLSFSVFANIL 122

Query: 43  ----------------GVCRRASLHPSERFEKTIRNAEKVFDEM-RVRG--IEPDVTSFS 83
                           G+C + S          +  A      + RV G  ++P+V  ++
Sbjct: 123 KKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYN 182

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            ++    +      + D  + M  +GI P V TYS+++      G+++DA +L  +M+  
Sbjct: 183 TIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILE 242

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
            + P   T+N     +           ++  M + G+  PN+ +Y  L+  +  + +++ 
Sbjct: 243 NIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGI-KPNVVTYCSLMDGYCLVKQVNK 301

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
              I+N +   G+ PD  SY ++I+G C+ +K  EA   F +M  K ++P  VT+ +L  
Sbjct: 302 ANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLID 361

Query: 264 GLIQSDMLRTWRRLKKKLDEESI 286
           GL +S  +    +L  ++ +  +
Sbjct: 362 GLCKSGKISYALKLVDEMHDRGV 384


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 127/276 (46%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI       R + A      M+     PN  TYNV++ G C              I+
Sbjct: 380 YSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIG----------YIQ 429

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +FD+M   G  P+V +++I++H+Y +      ++  L  MK  G+     TY++++
Sbjct: 430 KATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLI 489

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G++E A  L  EMV +G+ P+  TYN     Y      + A+ L+ +M E G  
Sbjct: 490 SGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESG-N 548

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+  +YN++I  F   NR+         +   GL P++ +YT  I GLC+  +   A +
Sbjct: 549 VPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFK 608

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F EM ++   P   T+ +L  GL Q        RL
Sbjct: 609 IFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERL 644



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 144/328 (43%), Gaps = 61/328 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-----ERF 56
           YTSLI G CK   +D+A      M++ G +PN VTY+ L+NG+C    L  +     E  
Sbjct: 240 YTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMI 299

Query: 57  EKTIR--------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +K I                      A K+  +M+ RG  P+V +++ ++   SR  + +
Sbjct: 300 DKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFE 359

Query: 97  LSLDKLNFMKEKGICPTVATYSS-----------------------------------VV 121
           +++   + M   G+ PT  TYS+                                   ++
Sbjct: 360 VAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVII 419

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  CS G I+ A  +  +M++ G  P+  TYN     Y  +   N AM+L   MK +GL 
Sbjct: 420 KGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLK 479

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + +  +Y  LI  F    +++    ++N++   G+ P++ +Y  +I+G     K  +A  
Sbjct: 480 L-DTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALA 538

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            F +M+E G +P   T+  +  G  +++
Sbjct: 539 LFWKMVESGNVPSSGTYNMMISGFSKTN 566



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 125/276 (45%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + ++I   C   ++  AE  +G +   G  P+  TY  L+ G C+  +L           
Sbjct: 205 FNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDL--------- 255

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++FD M   G +P+  ++S +++      + + ++D L  M +KGI PTV  Y+  +
Sbjct: 256 -AFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPI 314

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A +LLG+M + G  P+ +TY               A+ +Y +M  DGL 
Sbjct: 315 VSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGL- 373

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP   +Y+ LI       R +    I+  +      P+ ++Y ++I G C     ++A  
Sbjct: 374 VPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATA 433

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F +M++ G  P  +T+  +     +   +    RL
Sbjct: 434 IFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRL 469



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 32/292 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH---------- 51
           Y +LI G+ +  +++ A     EM+E G+ PNVVTYN ++NG    A +           
Sbjct: 485 YANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMV 544

Query: 52  -----PSER--------FEKT--IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                PS          F KT  I  AE    +M  +G+ P+V +++  +    +  +  
Sbjct: 545 ESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTS 604

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           L+    + MK++   P + TYSS++  LC  G+ EDAE LL +    G  P+ +TY    
Sbjct: 605 LAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDD----GCEPNVDTYTTLV 660

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN-ILIGMFMALNRMDMVREIWNDVKGSG 215
           +   G+     A +L   MK+ GL  P+   Y  +L+G    L  ++   +I++ +  +G
Sbjct: 661 RGLCGKGRCYEADQLVESMKKKGL-QPSEEIYRALLVGQCKNL-EVESALKIFDSMVTTG 718

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
             P L  Y  LI  LC+    ++A   F  M++K     +V +  L  GL++
Sbjct: 719 FQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLK 770



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 96/200 (48%), Gaps = 1/200 (0%)

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           V+ EM   GI P++ +F+ ++ +     + Q +   +  +   G CP   TY+S++   C
Sbjct: 189 VYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHC 248

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
             G ++ A E+   MV++G  P++ TY+              AM +  +M + G+  P +
Sbjct: 249 KNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGI-EPTV 307

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
           H+Y I I       R     ++   +K  G GP++ +YT LI GL    K++ A   + +
Sbjct: 308 HAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHK 367

Query: 246 MIEKGLLPQKVTFETLYRGL 265
           M+  GL+P  VT+  L   L
Sbjct: 368 MLADGLVPTAVTYSALINQL 387



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 94/185 (50%), Gaps = 1/185 (0%)

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           SFS +L    +     L  D    M   GI P + T+++++K LC+ G++++AE ++G +
Sbjct: 169 SFSTLLIQLGKFDMDGLGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHI 228

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
              G CP   TY      +    + + A +++ +M +DG C PN  +Y+ LI    +  R
Sbjct: 229 FHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDG-CDPNSVTYSALINGLCSEGR 287

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           ++   ++  ++   G+ P + +YT+ I  LC+  +  EA +   +M ++G  P   T+  
Sbjct: 288 LEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTA 347

Query: 261 LYRGL 265
           L  GL
Sbjct: 348 LISGL 352



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 10/134 (7%)

Query: 161 GRKDANG-AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
           G+ D +G    +Y +M   G+  PN+ ++N +I +     ++     I   +   G  PD
Sbjct: 178 GKFDMDGLGRDVYIEMLNSGI-RPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPD 236

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
             +YT LI G C+      A + F  M++ G  P  VT+  L  GL          RL++
Sbjct: 237 TFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEG------RLEE 290

Query: 280 KLD--EESITFGSE 291
            +D  EE I  G E
Sbjct: 291 AMDMLEEMIDKGIE 304


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 155/340 (45%), Gaps = 61/340 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI  +CK+   D A++ L EM ERG   N VTYNVL+ G+CR  ++  +  F+K + 
Sbjct: 120 YSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 179

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +                         A+ + DEM    ++P+V  ++ ++  + R     
Sbjct: 180 DYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNAD 239

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   +  M   G+ P   TY ++V+ LC  G+++ A  LL +MVR+   P   TYN   
Sbjct: 240 EAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLII 299

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI-------------------------- 190
           + +    +   A +L  +M+  G+  PN+++Y+I                          
Sbjct: 300 EGHFRHHNKKDAFRLLSEMENAGIS-PNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGL 358

Query: 191 ---------LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
                    LI  +     + +  EI++ +    + PDL  Y  LI GL +  + +E+ +
Sbjct: 359 KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTK 418

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           YF +M E+GLLP + T+  L  G +++  L +  +L +++
Sbjct: 419 YFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRM 458



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 142/285 (49%), Gaps = 14/285 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL-HPSERFEKT 59
           +Y +LI G+ +    D A + + EM+  GV+PN +TY+ L+ G+C+   +   S   ++ 
Sbjct: 224 VYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQM 283

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +R++ +           PD  ++++++  + R H  + +   L+ M+  GI P V TYS 
Sbjct: 284 VRDSHR-----------PDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSI 332

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC  G  E A +LL EM   G+ P+A  Y      Y    + + A +++ +M +  
Sbjct: 333 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 392

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           + +P+++ YN LI     + R++   + +  ++  GL P+  +Y+ LIHG  +    + A
Sbjct: 393 V-LPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESA 451

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKKKLDE 283
            Q    M++ GL P  V +  L     +SD + +     K  LD+
Sbjct: 452 EQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQ 496



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 137/294 (46%), Gaps = 16/294 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I+G C+    + A   L EM  +G++PN   Y  L++G CR          E  + 
Sbjct: 330 YSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCR----------EGNVS 379

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++FD+M    + PD+  ++ ++   S+  + + S      M+E+G+ P   TYS ++
Sbjct: 380 LACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLI 439

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G +E AE+L+  M+  G+ P+   Y    + Y    D       ++ M + G+ 
Sbjct: 440 HGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVM 499

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N   Y ILI    +   M+    + ++++ +G  PD+  Y+ LI GLC+    ++A  
Sbjct: 500 LDN-RIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFG 558

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGS 290
              EM +KG+ P  V +  L  GL +S  +   R      L K L    +T+ S
Sbjct: 559 ILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTS 612



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 144/356 (40%), Gaps = 64/356 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y SLI+G  K+ R++ + ++  +M ERG+ PN  TY+ L++G  +   L  +E+      
Sbjct: 400 YNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRML 459

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  I      F  M  +G+  D   + I++H  S +   +
Sbjct: 460 DTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNME 519

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L+ +++ G  P V  YSS++  LC     E A  +L EM + GV P+   YN   
Sbjct: 520 AAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALI 579

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                  D + A  ++  +   GL VPN  +Y  LI     +  +     ++N++  +G+
Sbjct: 580 DGLCKSGDISYARNVFNSILAKGL-VPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGI 638

Query: 217 GPD----------------------------------LDSYTMLIHGLCEKQKWKEACQY 242
            PD                                  + S+  L+ G C++ K +E  + 
Sbjct: 639 TPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKL 698

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
              ++ +GL+P  +T E +  GL ++  L     +  +L +++    SE    HF 
Sbjct: 699 LHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKT----SESAARHFS 750



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 130/282 (46%), Gaps = 11/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G CK+ ++D A   L +M+     P+ +TYN+++ G  R              +
Sbjct: 260 YDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRH----------HNKK 309

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  EM   GI P+V ++SI++H   ++ +P+ + D L  M  KG+ P    Y+ ++
Sbjct: 310 DAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLI 369

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +  A E+  +M +  V P    YN              + K + QM+E GL 
Sbjct: 370 SGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGL- 428

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN  +Y+ LI  ++    ++   ++   +  +GL P+   Y  L+    +    ++   
Sbjct: 429 LPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSS 488

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            F  M+++G++     +  L   L  S  +    R+  ++++
Sbjct: 489 TFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEK 530



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 120/267 (44%), Gaps = 12/267 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI+       ++ A R L E+ + G  P+V  Y+ L++G+C+ A            
Sbjct: 504 IYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADR---------- 553

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + DEM  +G++P++  ++ ++    ++     + +  N +  KG+ P   TY+S+
Sbjct: 554 EKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSL 613

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G I +A  L  EM+  G+ P A  Y+          D   AM L  +M   G 
Sbjct: 614 IDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH 673

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              ++ S+N L+  F    +M    ++ + + G GL P+  +   +I GL E  K  E  
Sbjct: 674 A--SISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVH 731

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQ 267
             FVE+ +K        F +L+  +I 
Sbjct: 732 TIFVELQQKTSESAARHFSSLFMDMIN 758



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 120/283 (42%), Gaps = 11/283 (3%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+  + K  R+  A   +  M +RG+ P++   N LL  + R  ++              
Sbjct: 53  LVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMAL----------LW 102

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           KV + M   GI PDV ++S ++  Y +  +   +   L  M+E+G      TY+ ++  L
Sbjct: 103 KVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGL 162

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G +E+A     +M   G+ P   TY          + +N A  L  +M    L  PN
Sbjct: 163 CRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAEL-KPN 221

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           +  Y  LI  FM     D   ++  ++  +G+ P+  +Y  L+ GLC+  +   A     
Sbjct: 222 VVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLK 281

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +M+     P  +T+  +  G  +    +   RL  +++   I+
Sbjct: 282 QMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGIS 324



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 123/316 (38%), Gaps = 66/316 (20%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+SLI G CK    + A   L EM ++GV+PN+V YN L++G+C+             I
Sbjct: 539 VYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGD----------I 588

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  VF+ +  +G+ P+  +++ ++    +      +    N M   GI P    YS +
Sbjct: 589 SYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL 648

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
                S G +E A  L+ EM   G   S  ++N     +  R      +KL   +   GL
Sbjct: 649 TTGCSSAGDLEQAMFLIEEMFLRGHA-SISSFNNLVDGFCKRGKMQETLKLLHVIMGRGL 707

Query: 181 CVPNMHSY-NILIGM------------FMALNR--------------MDMVRE------- 206
            VPN  +  NI+ G+            F+ L +              MDM+ +       
Sbjct: 708 -VPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDV 766

Query: 207 ------------------IWNDVKGSGLGP-DLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
                             +  DV  +   P    SY  ++  LC K K  EA     EM 
Sbjct: 767 VDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMD 826

Query: 248 EKG-LLPQKVTFETLY 262
           ++G L P  V    ++
Sbjct: 827 KRGNLQPTLVALLGIF 842


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 144/293 (49%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I G+ K   +D       EM+++ + PNVVTYN ++  +C+           +T+ 
Sbjct: 15  YSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCK----------AQTVD 64

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V   M   G+ PD  +++ ++H +  + QP+ ++  L  M+  G+ P V TY+S++
Sbjct: 65  KAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLM 124

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A ++   M + G+ P   TY    + Y  +        L   M  +G+ 
Sbjct: 125 DYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 184

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN + ++IL+  +    +++    +++ ++  GL P+  +Y  +I  LC+  + ++A  
Sbjct: 185 -PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAML 243

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           YF +MI++GL P  + + +L   L   D       L  ++ +  I   + F N
Sbjct: 244 YFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFN 296



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 132/260 (50%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I   CK   +D A   L  M++ GV P+ +TYN +++G C  +S  P E       
Sbjct: 50  YNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFC--SSGQPKE------- 100

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A     +MR  G+EPDV +++ ++    +  +   +    + M ++G+ P + TY +++
Sbjct: 101 -AIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLL 159

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +   + G + +   LL  MVRNG+ P+   ++     Y  ++    AM ++ +M++ GL 
Sbjct: 160 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLN 219

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +Y  +I +     R++     +  +   GL PD   Y  LIH LC   KW++A +
Sbjct: 220 -PNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEE 278

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F+EM+++G+    + F ++
Sbjct: 279 LFLEMLDRGICLSTIFFNSI 298



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 103/219 (47%), Gaps = 6/219 (2%)

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           PDV S+S V++ + +      +    N M +K I P V TY+S++  LC    ++ A E+
Sbjct: 10  PDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEV 69

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
           L  MV++GV P   TYN     +        A+   ++M+ DG+  P++ +YN L+    
Sbjct: 70  LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGV-EPDVVTYNSLMDYLC 128

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
              R    R+I++ +   GL PD+ +Y  L+ G   K    E       M+  G+ P   
Sbjct: 129 KNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 188

Query: 257 TFETLY-----RGLIQSDMLRTWRRLKKKLDEESITFGS 290
            F  L      +  ++  ML   +  ++ L+  ++T+G+
Sbjct: 189 VFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGT 227



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 25/204 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           Y SL+   CK  R   A +    M +RG++P++ TY  LL G   + +L           
Sbjct: 120 YNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMV 179

Query: 51  ----HPSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
               HP+             ++ +  A  VF +MR +G+ P+  ++  V+ V  ++ + +
Sbjct: 180 RNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVE 239

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++     M ++G+ P    Y+S++  LC   + E AEEL  EM+  G+C S   +N   
Sbjct: 240 DAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSII 299

Query: 157 KEYRGRKDANGAMKLYRQMKEDGL 180
             +        ++KL+  M   G+
Sbjct: 300 DSHCKEGRVIESVKLFDLMVRIGV 323



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 77/151 (50%), Gaps = 10/151 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +++ L+  + K  +++ A     +M ++G+ PN VTY  +++ +C+      S R E  +
Sbjct: 189 VFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCK------SGRVEDAM 242

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              E++ DE    G+ PD   ++ ++H      + + + +    M ++GIC +   ++S+
Sbjct: 243 LYFEQMIDE----GLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSI 298

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
           +   C  GR+ ++ +L   MVR GV P   T
Sbjct: 299 IDSHCKEGRVIESVKLFDLMVRIGVKPDIIT 329



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 175 MKEDG-LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           M +DG  C P++ SY+ +I  F     +D     +N++    + P++ +Y  +I  LC+ 
Sbjct: 1   MADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKA 60

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           Q   +A +    M++ G++P  +T+ ++  G   S   +      KK+  + +
Sbjct: 61  QTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGV 113


>gi|224136366|ref|XP_002326842.1| predicted protein [Populus trichocarpa]
 gi|222835157|gb|EEE73592.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 133/289 (46%), Gaps = 15/289 (5%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           +SLI G  K+ R+  A   L EMI  G+  N   + +LL+G  R             +  
Sbjct: 398 SSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGD----------VAG 447

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  +++EM  RGI PD  +FS  ++  S       + D    M +KG  P    Y+S+++
Sbjct: 448 AYSLWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIR 507

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C+ GR+++A  L  EM R G+ P   T N              A  ++R M   GL +
Sbjct: 508 GFCNSGRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGL-I 566

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ +YN LI  +          E+ N +  +G  PD+ +Y + +HGLC  +K   A   
Sbjct: 567 PDIVTYNTLIDGYCKAFDTVSTDEVVNKMYATGWDPDITTYNIRLHGLCTGRKMSRAVMM 626

Query: 243 FVEMIEKGLLPQKVTFETLYRG----LIQSDMLRTWRRLKKKLDEESIT 287
             E+I  G++P  VT+ T+  G    +++  M+ T + LK       +T
Sbjct: 627 LEELISAGVVPDTVTYNTVMNGVCTDVLERAMIVTAKLLKMAFVPNVVT 675



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 126/297 (42%), Gaps = 26/297 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           Y +L+ G+ K   I  A     EM  + V P+  T+N+L+ G  R       +R  +   
Sbjct: 257 YNTLMNGYVKARDIGQANMLYEEMKSKAVAPDCTTFNILVAGHYRYGREEDRDRLLRDLS 316

Query: 60  -----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  +  A K  ++M  +GI P V +F+ ++  YSRA   +
Sbjct: 317 QSGSLSISSLYNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEE 376

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      M + G+ P+  T SS++  L    R+++A +LL EM+  G+  +   +    
Sbjct: 377 KAYKAYRMMVKFGLFPSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLL 436

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y    D  GA  L+ +M+  G+  P+  +++  I     +  +D   +++  +   G 
Sbjct: 437 DGYFRMGDVAGAYSLWNEMEGRGIH-PDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGF 495

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT 273
            P+   Y  LI G C   + +EA     EM  KGLLP   T   +  GL +   +++
Sbjct: 496 MPNNFVYNSLIRGFCNSGRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKS 552



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 109/242 (45%), Gaps = 11/242 (4%)

Query: 20  RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDV 79
           + L  MI +G  P    +N ++ G CR+            ++  E +   M+    +PDV
Sbjct: 135 KLLRGMIHQGPRPCNRNFNAVILGFCRKGH----------VKVGESLLCVMQKFKCQPDV 184

Query: 80  TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
            +++I+++ Y    Q   +L  + FM + G  P++ T+ +V+   C+ G + +A  L   
Sbjct: 185 YAYNILINAYCTRGQTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARNLFDG 244

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
           M   G  P+   YN     Y   +D   A  LY +MK   +  P+  ++NIL+       
Sbjct: 245 MKEAGHIPNVVCYNTLMNGYVKARDIGQANMLYEEMKSKAV-APDCTTFNILVAGHYRYG 303

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           R +    +  D+  SG       Y + + GLC      EA ++  +M+EKG+ P  V F 
Sbjct: 304 REEDRDRLLRDLSQSGSLSISSLYNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFN 363

Query: 260 TL 261
           ++
Sbjct: 364 SI 365



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/379 (20%), Positives = 141/379 (37%), Gaps = 94/379 (24%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH---------- 51
           + ++I G+C+   + + E  L  M +   +P+V  YN+L+N  C R              
Sbjct: 152 FNAVILGFCRKGHVKVGESLLCVMQKFKCQPDVYAYNILINAYCTRGQTFDALGWMRFMI 211

Query: 52  -----PSERFEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                PS     T+ N          A  +FD M+  G  P+V  ++ +++ Y +A    
Sbjct: 212 DNGCTPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYVKARDIG 271

Query: 97  LSLDKLNFMKEKGICPTVAT-----------------------------------YSSVV 121
            +      MK K + P   T                                   Y+  V
Sbjct: 272 QANMLYEEMKSKAVAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQSGSLSISSLYNICV 331

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
             LC  G +++A + L +M+  G+ P+   +N     Y        A K YR M + GL 
Sbjct: 332 SGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLF 391

Query: 181 --------------------------------CVP-NMHSYNILIGMFMALNRMDMVREI 207
                                            +P N  ++ +L+  +  +  +     +
Sbjct: 392 PSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAGAYSL 451

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           WN+++G G+ PD  +++  I+GL       EA   F++M +KG +P    + +L RG   
Sbjct: 452 WNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCN 511

Query: 268 SDMLRTWRRLKKKLDEESI 286
           S  L+    L++++  + +
Sbjct: 512 SGRLQEALMLEREMARKGL 530



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 10/153 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SLI G+C   R+  A     EM  +G+ P++ T N+++NG+C+          E  +
Sbjct: 501 VYNSLIRGFCNSGRLQEALMLEREMARKGLLPDIFTTNIIINGLCK----------EGRM 550

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           ++A  VF  M   G+ PD+ +++ ++  Y +A     + + +N M   G  P + TY+  
Sbjct: 551 KSASDVFRNMHHTGLIPDIVTYNTLIDGYCKAFDTVSTDEVVNKMYATGWDPDITTYNIR 610

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           +  LC+  ++  A  +L E++  GV P   TYN
Sbjct: 611 LHGLCTGRKMSRAVMMLEELISAGVVPDTVTYN 643



 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 1/152 (0%)

Query: 132 DAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNIL 191
           +A E++G M   G+ PS+      FK      D     KL R M   G   P   ++N +
Sbjct: 97  EALEIVGRMREVGLRPSSSAITILFKLLLRIGDHGSVWKLLRGMIHQG-PRPCNRNFNAV 155

Query: 192 IGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 251
           I  F     + +   +   ++     PD+ +Y +LI+  C + +  +A  +   MI+ G 
Sbjct: 156 ILGFCRKGHVKVGESLLCVMQKFKCQPDVYAYNILINAYCTRGQTFDALGWMRFMIDNGC 215

Query: 252 LPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            P  VTF T+         +   R L   + E
Sbjct: 216 TPSLVTFGTVINAFCNQGNMMEARNLFDGMKE 247



 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 14/105 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y   ++G C   ++  A   L E+I  GV P+ VTYN ++NGVC       ++  E+ + 
Sbjct: 607 YNIRLHGLCTGRKMSRAVMMLEELISAGVVPDTVTYNTVMNGVC-------TDVLERAMI 659

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL---DKLN 103
              K+     V    P+V + +++L  + +   P+ ++    KLN
Sbjct: 660 VTAKLLKMAFV----PNVVTANLLLSHFCKQGMPEKTIMWGQKLN 700


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 142/288 (49%), Gaps = 12/288 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G C+   +  A   +  M+  G   N+ TY +L+ G+C+   +H          
Sbjct: 252 YTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIH---------- 301

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  + DEM +RG+ P V +++ ++  Y ++ + + +L     M++ G  P   TY+S++
Sbjct: 302 DARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLI 361

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++++AEELL   +  G  P+  T+      Y   +  + A+++   M     C
Sbjct: 362 YGLCG-GKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSN-C 419

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++ +Y +LI + +   R+   +E  N++  +GL P++ +YT +I G C+      A +
Sbjct: 420 KLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALE 479

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
            F  M  +G  P   T+ +L  GLIQ   L     L  K+ E+ IT G
Sbjct: 480 VFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPG 527



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 33/314 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSL+ G+ K    D A   + +M+  G + ++ TY+VLL  +C+          +K + 
Sbjct: 598 YTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCK----------QKKLN 647

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D+M V G++ ++ +++I++    +  +   +    N M   G  P+  TY+  +
Sbjct: 648 EALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFI 707

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GRIE+AE L+GEM R+GV P   TYN F          + A    ++M  D  C
Sbjct: 708 SSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMV-DASC 766

Query: 182 VPNMHSYNILIGMFMALN----------------RMDMVREIWNDVKGSGLGPDLDSYTM 225
            PN  +Y +L+  F+ ++                 ++MV ++   +   GL P + +Y+ 
Sbjct: 767 EPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWIELNMVWQLLERMMKHGLNPTVVTYSS 826

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ--SDMLRTWRRLKKKLDE 283
           +I G C+  + +EAC     M+ K + P     E +Y  LI+   D+    + +    D 
Sbjct: 827 IIAGFCKATRLEEACVLLDHMLGKDISPN----EEIYTMLIKCCCDIKLFGKAVSFVTDM 882

Query: 284 ESITFGSEFQNYHF 297
               F  + ++YH+
Sbjct: 883 IEFGFQPQLESYHY 896



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 134/283 (47%), Gaps = 17/283 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLIYG  +  ++  A   + +M E G+ P V+TY  L+ G C++        F+    
Sbjct: 496 YGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKK------HEFD---- 545

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA ++F+ M   G+ PD  +++++     ++ + +   +  +F+  KG+  T  TY+S+V
Sbjct: 546 NAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAE---EAYSFLVRKGVVLTKVTYTSLV 602

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
                 G  + A  L+ +MV  G      TY+   +    +K  N A+ +  QM   G+ 
Sbjct: 603 DGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVK 662

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C  N+ +Y I+I   +   + D  + ++N++  SG  P   +YT+ I   C+  + +EA 
Sbjct: 663 C--NIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAE 720

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKKKLD 282
               EM   G+ P  VT+     G      + R +  LK+ +D
Sbjct: 721 HLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVD 763



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 131/323 (40%), Gaps = 59/323 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           Y SLIYG C   ++D AE  L   I RG  P V+T+  L+NG C+   +  + R +    
Sbjct: 357 YNSLIYGLCG-GKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMI 415

Query: 60  -----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  ++ A++  +EM   G+ P+V +++ ++  Y +     
Sbjct: 416 SSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVG 475

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+    M+ +G  P   TY S++  L    ++  A  L+ +M  +G+ P   TY    
Sbjct: 476 AALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLI 535

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI-------------------------- 190
           +    + + + A +L+  M+++GL  P+  +YN+                          
Sbjct: 536 QGQCKKHEFDNAFRLFEMMEQNGL-TPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLT 594

Query: 191 ------LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
                 L+  F      D    +   +   G   DL +Y++L+  LC+++K  EA     
Sbjct: 595 KVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILD 654

Query: 245 EMIEKGLLPQKVTFETLYRGLIQ 267
           +M   G+    V +  +   +I+
Sbjct: 655 QMTVSGVKCNIVAYTIIISEMIK 677



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 142/332 (42%), Gaps = 58/332 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I  +CK   + +A R+   + E G++ +  T N LL G CR + L          R
Sbjct: 182 YNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDL----------R 231

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M + G   +  S++I++     A   + +L  +  M   G    + TY+ ++
Sbjct: 232 KACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLI 291

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGR-KDANGAMKLYRQMKED 178
           K LC  GRI DA  LL EM   GV PS  TYN     Y   GR KDA G   L   M+++
Sbjct: 292 KGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKAL---MEQN 348

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC------- 231
           G C P+  +YN LI   +   ++D   E+ N     G  P + ++T LI+G C       
Sbjct: 349 G-CNPDDWTYNSLI-YGLCGGKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDD 406

Query: 232 ----------------------------EKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
                                       +K + KEA +   EM   GL P  VT+ ++  
Sbjct: 407 ALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIID 466

Query: 264 GLIQSDMLRTWRRLKKKLDEE-----SITFGS 290
           G  +  M+     + K ++ E     + T+GS
Sbjct: 467 GYCKVGMVGAALEVFKLMEHEGCHPNAWTYGS 498



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 120/306 (39%), Gaps = 62/306 (20%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT  I  +CKI RI+ AE  +GEM   GV P+VVTYN+ +NG                I 
Sbjct: 703 YTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMG----------YID 752

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSR-----AH-----------QPQLSLDKLNFM 105
            A      M     EP+  ++ ++L  + +     AH           +  +    L  M
Sbjct: 753 RAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWIELNMVWQLLERM 812

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
            + G+ PTV TYSS++   C   R+E+A  LL  M+   + P+ E Y    K        
Sbjct: 813 MKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIK-------- 864

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
                          C  ++  +   +         DM+          G  P L+SY  
Sbjct: 865 ---------------CCCDIKLFGKAVSFVT-----DMIE--------FGFQPQLESYHY 896

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           LI GLC++  +  A   F +++       +V ++ L  GL+++  +    +L   +D   
Sbjct: 897 LIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILNDGLLKAGHVDFCSQLLAAMDNRH 956

Query: 286 ITFGSE 291
               SE
Sbjct: 957 CRIDSE 962



 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 8/151 (5%)

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           +L   +V+ G+ P   TYN     Y  +     A + +  ++E G+    M +Y     +
Sbjct: 165 KLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGM---QMDTYTCNALL 221

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLD--SYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                  D+ +  W  +    +G   +  SYT+LI GLCE +  +EA      M+  G  
Sbjct: 222 LGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCS 281

Query: 253 PQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
               T+  L +GL +   +   R L   LDE
Sbjct: 282 LNLHTYTLLIKGLCKEGRIHDARGL---LDE 309


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 138/286 (48%), Gaps = 14/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+ I   C + RI+ A +   +M ++G +PNV TY  L++G             ++  R
Sbjct: 336 FTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISG-------------QRVSR 382

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F  M   G+ P+  +++ +++V     +   +L   N M + G  P  ++Y+ ++
Sbjct: 383 MAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELI 442

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C+ G  E A  +L  M++    P+  TYN   K Y    D + A+++   MK +G C
Sbjct: 443 RGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANG-C 501

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  SY  LI  F  +++M++   ++N++   GL P+  +YT LI G C+ +K   A +
Sbjct: 502 QPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAAR 561

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
               M   G  P   T+  L  GL + +       L K + EE I+
Sbjct: 562 MLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKIS 607



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 144/305 (47%), Gaps = 29/305 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF--EKT 59
           YTS+I G+C+   +D A      M E G EPN  TY+ L+NG+C    ++ +  F  E T
Sbjct: 266 YTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMT 325

Query: 60  -----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  I +A K+F +M+ +G +P+V +++ ++   S     +
Sbjct: 326 RHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLI---SGQRVSR 382

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           +++   + M   G+ P   TY++++  L     I+ A  +   M ++G  P+  +YN   
Sbjct: 383 MAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELI 442

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           + Y    D   AM +   M + G   P + +YNI+I  +      D+   +   +K +G 
Sbjct: 443 RGYCTIGDTEKAMSMLTNMLK-GRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGC 501

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD  SYT LI G C+  K + A   F EM+++GL P +VT+  L  G  + + L    R
Sbjct: 502 QPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAAR 561

Query: 277 LKKKL 281
           + +++
Sbjct: 562 MLERM 566



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 133/268 (49%), Gaps = 14/268 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y S+I   CK   +  AE  + ++ + G++P+  TY  ++ G CR           + +
Sbjct: 230 IYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCR----------NRDL 279

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A ++F+ M   G EP+  ++S +++    + +   +LD ++ M   G+ PTV T+++ 
Sbjct: 280 DSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAP 339

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  GRIEDA ++  +M + G  P+  TY        G++ +  A+ L+ +M  DG+
Sbjct: 340 IVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLIS---GQRVSRMAIGLFHRMSRDGV 396

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VPN  +YN L+ + M    +D    ++N +   G  P+  SY  LI G C     ++A 
Sbjct: 397 -VPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAM 455

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
                M++    P  VT+  + +G   S
Sbjct: 456 SMLTNMLKGRPTPTLVTYNIIIKGYCDS 483



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 133/270 (49%), Gaps = 47/270 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G+CKI+++++A     EM++RG+ PN VTY  L++G C+          ++ + 
Sbjct: 508 YTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCK----------DEKLD 557

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ + M+  G  P+V ++++++H  ++ +    + +    M E+ I P V TYS+V+
Sbjct: 558 CAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVI 617

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+ G I  A E+  +MV++G                                    C
Sbjct: 618 NGLCNNGAIPLALEMFNKMVKHG------------------------------------C 641

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+H+Y+ LI       R++   E+++++K  GL PD  +Y  +I       K   A  
Sbjct: 642 LPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFD 701

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           +  EMI  G  P   T++ L +GL Q++M+
Sbjct: 702 FLGEMINAGCQPTLQTYDVLIKGL-QNEMV 730



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 133/257 (51%), Gaps = 11/257 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C I   + A   L  M++    P +VTYN+++ G C       + R      
Sbjct: 438 YNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIR------ 491

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               V + M+  G +PD  S++ ++  + +  + +L+    N M ++G+CP   TY++++
Sbjct: 492 ----VLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALI 547

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   +++ A  +L  M R+G  P+ +TYN        + + +GA +L + M E+ + 
Sbjct: 548 SGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKIS 607

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ +I        + +  E++N +   G  P+L +Y+ LI  L ++ + +EA +
Sbjct: 608 -PDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEE 666

Query: 242 YFVEMIEKGLLPQKVTF 258
            F E+ ++GL+P +VT+
Sbjct: 667 MFSELKKQGLIPDEVTY 683



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 129/291 (44%), Gaps = 29/291 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC---------------- 45
           YTSLI G  +++R  MA      M   GV PN VTYN L+N +                 
Sbjct: 371 YTSLISGQ-RVSR--MAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMG 427

Query: 46  RRASLHPSERFEKTIRNAEKVFDEMRVRGI---------EPDVTSFSIVLHVYSRAHQPQ 96
           +   L  +  + + IR    + D  +   +          P + +++I++  Y  +    
Sbjct: 428 KHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTD 487

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           +++  L  MK  G  P   +Y+ ++   C   ++E A  +  EM+  G+CP+  TY    
Sbjct: 488 VAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALI 547

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y   +  + A ++  +MK  G C PN+ +YN+LI      N      E+   +    +
Sbjct: 548 SGYCKDEKLDCAARMLERMKRSG-CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKI 606

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            PD+ +Y+ +I+GLC       A + F +M++ G LP   T+ +L + L Q
Sbjct: 607 SPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQ 657



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 103/198 (52%), Gaps = 1/198 (0%)

Query: 67  FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS 126
            D    RG +  + +++ +L   ++ +     +D+ + +  +G+ P +  Y+SV+  LC 
Sbjct: 181 LDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCK 240

Query: 127 CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH 186
            G + DAE ++ ++ ++G+ P   TY      Y   +D + A +++ +M E+G C PN  
Sbjct: 241 DGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEG-CEPNAA 299

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
           +Y+ LI       R++   +  +++   G+ P + ++T  I  LC+  + ++A + F++M
Sbjct: 300 TYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDM 359

Query: 247 IEKGLLPQKVTFETLYRG 264
            +KG  P   T+ +L  G
Sbjct: 360 KKKGCKPNVYTYTSLISG 377



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 145/348 (41%), Gaps = 85/348 (24%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK--- 58
           YT+LI G+CK  ++D A R L  M   G  PNV TYNVL++G+ ++ +   +E   K   
Sbjct: 543 YTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVML 602

Query: 59  ------------TIRN----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                       T+ N          A ++F++M   G  P++ ++S ++    +  + +
Sbjct: 603 EEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVE 662

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG------------ 144
            + +  + +K++G+ P   TY  +++     G+++ A + LGEM+  G            
Sbjct: 663 EAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLI 722

Query: 145 -------------VCPSAETYNCF---------------------FKEYRGRKDA----- 165
                          P+A + + F                     F+  R   DA     
Sbjct: 723 KGLQNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQLYDALLSRL 782

Query: 166 --NG----AMKLYRQMKEDGLCVPNMHSY-NILIGMFMALNRMDMVREIWNDVKGSGLGP 218
             +G    A  LYR M     C PN  +Y + LI +  AL ++D+  +++  +       
Sbjct: 783 SRSGRWFEANNLYRSMVSQSQC-PNQDTYKHFLISLLRAL-KVDLAMDVFKHMSDQRCEL 840

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
            L  Y  LI  LC+  + KEA   F +M+ + L   ++ +  L  GL+
Sbjct: 841 HLTGYKELICTLCQLHRRKEARFVFEKMLSRALNADEIVWTILINGLL 888



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 25/247 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I       ++D A  FLGEMI  G +P + TY+VL+ G+      H          
Sbjct: 683 YVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVALPNAAS 742

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            +   FD+   + I  DV S      V S        L +L+F   + +      Y +++
Sbjct: 743 TS--TFDD---QIINKDVIS------VLSS------KLAELDFELSRQL------YDALL 779

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR  +A  L   MV    CP+ +TY  F          + AM +++ M  D  C
Sbjct: 780 SRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHM-SDQRC 838

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++  Y  LI     L+R    R ++  +    L  D   +T+LI+GL     +K+ C 
Sbjct: 839 ELHLTGYKELICTLCQLHRRKEARFVFEKMLSRALNADEIVWTILINGLL-GAGYKDLCM 897

Query: 242 YFVEMIE 248
            F+ ++E
Sbjct: 898 EFLHIME 904



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 1/118 (0%)

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           TY     +       +  M  Y Q+  +GL  PN+  YN +I        +     I N 
Sbjct: 195 TYTTLLIQLNKLNMTSTVMDRYHQILREGL-QPNLLIYNSVINALCKDGNVRDAESIINK 253

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           V  SG+ PD  +YT +I G C  +    A + F  M E+G  P   T+ TL  GL  S
Sbjct: 254 VFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNS 311



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/100 (22%), Positives = 48/100 (48%)

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y  L+     LN    V + ++ +   GL P+L  Y  +I+ LC+    ++A     
Sbjct: 193 LFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIIN 252

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
           ++ + G+ P   T+ ++  G  ++  L +   +  ++DEE
Sbjct: 253 KVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEE 292


>gi|226509960|ref|NP_001150456.1| LOC100284086 [Zea mays]
 gi|195639404|gb|ACG39170.1| ATP binding protein [Zea mays]
          Length = 634

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 140/258 (54%), Gaps = 12/258 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+  WC    +  A R   EM+E+G++P+VV +N ++ G+ R       +R  + + 
Sbjct: 334 YTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLR------GQRRPEAV- 386

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K+F+ M+ +G  P+V ++++++  + +  +  ++++    M+E    P VATY+ ++
Sbjct: 387 ---KMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLL 443

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               +  +++    +L EM + G  P A TYN   K    R   + A ++Y++M + GL 
Sbjct: 444 VGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGL- 502

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            P +H+YN+++   F+  +   M   +W ++   G+ PD++SYT+ I+      + +EA 
Sbjct: 503 EPTIHTYNMMMKSYFVGDSNYAMGCAVWEEMHQRGICPDVNSYTVFINRHIRHGRPEEAY 562

Query: 241 QYFVEMIEKGLLPQKVTF 258
           +Y  EMI KG+   ++ +
Sbjct: 563 KYIEEMINKGMKAPQIDY 580



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 114/245 (46%), Gaps = 12/245 (4%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M + G +  V ++N LL  + +          E   R A +VFD+M  +   PD+ S++ 
Sbjct: 288 MRKNGFDDGVESFNCLLVALAK----------EGLGREARQVFDKMHGQ-YSPDLRSYTA 336

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           ++  +  A     +    N M EKG+ P V  ++++++ L    R  +A ++   M   G
Sbjct: 337 LMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKG 396

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
             P+  TY    +++  +   + AM+ + +M+E   C P++ +Y  L+  +    +MD V
Sbjct: 397 PPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQE-AKCQPDVATYTCLLVGYGNAKQMDRV 455

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             +  ++   G  PD  +Y  LI  L  +    +A + + +MI+KGL P   T+  + + 
Sbjct: 456 TAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKS 515

Query: 265 LIQSD 269
               D
Sbjct: 516 YFVGD 520



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 113/245 (46%), Gaps = 10/245 (4%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR---AHQPQLSLDKLNFMKEKGICPTVAT 116
           I+NA  VF+ MR  G +  V SF+ +L   ++     + +   DK++        P + +
Sbjct: 278 IKNAVGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQVFDKMHGQ----YSPDLRS 333

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQM 175
           Y++++   C+   + +A  +  EM+  G+ P    +N   +   RG++    A+K++  M
Sbjct: 334 YTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRPE-AVKMFELM 392

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           K  G   PN+ +Y +LI       +MDM  E + +++ +   PD+ +YT L+ G    ++
Sbjct: 393 KAKGP-PPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQ 451

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
                    EM +KG  P   T+  L + L   +M     R+ KK+ ++ +       N 
Sbjct: 452 MDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNM 511

Query: 296 HFKPY 300
             K Y
Sbjct: 512 MMKSY 516



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 108/248 (43%), Gaps = 13/248 (5%)

Query: 22  LGEMIERGVEPNV-VTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80
           + +++  G + N+    + L   +C    L    RF+   R + + F    V G     T
Sbjct: 169 IADVVASGADANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATVSGGFTHTT 228

Query: 81  -SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
            ++  +LH+  +  Q +  +  +  M + G   ++  +   +K   + G I++A  +   
Sbjct: 229 ITYCKMLHILGKTRQFESMVAMIQEMGKAGAL-SMDAFKVAIKSFAAAGEIKNAVGVFEL 287

Query: 140 MVRNGVCPSAETYNCFF----KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           M +NG     E++NC      KE  GR+    A +++ +M   G   P++ SY  L+  +
Sbjct: 288 MRKNGFDDGVESFNCLLVALAKEGLGRE----ARQVFDKMH--GQYSPDLRSYTALMLAW 341

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
                +     +WN++   G+ PD+  +  +I GL   Q+  EA + F  M  KG  P  
Sbjct: 342 CNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNV 401

Query: 256 VTFETLYR 263
            T+  L R
Sbjct: 402 WTYTMLIR 409



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 82/179 (45%), Gaps = 11/179 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ G+    ++D     L EM ++G  P+  TYN L+  +  R              
Sbjct: 439 YTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNR----------NMPD 488

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP-QLSLDKLNFMKEKGICPTVATYSSV 120
           +A +++ +M  +G+EP + ++++++  Y        +       M ++GICP V +Y+  
Sbjct: 489 DAARIYKKMIKKGLEPTIHTYNMMMKSYFVGDSNYAMGCAVWEEMHQRGICPDVNSYTVF 548

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +      GR E+A + + EM+  G+      YN F  ++      +   +L +++K  G
Sbjct: 549 INRHIRHGRPEEAYKYIEEMINKGMKAPQIDYNKFAADFSKAGKPDILFELAQKVKFAG 607


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 141/296 (47%), Gaps = 16/296 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I+G      I  A     EM+++GV PNVVTYN +++ +C+           + + 
Sbjct: 275 YTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCK----------ARAMD 324

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE V  +M    I+PD  +++ ++H YS   + + +      M  +G+ P + T++S++
Sbjct: 325 KAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLM 384

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R ++A E+   +   G  P   +Y+     Y           L+  M ++G+ 
Sbjct: 385 DSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGI- 443

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V + H +NILI        MD    I+ +++G G+ P++ +Y  +I  LC   +  +A +
Sbjct: 444 VADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAME 503

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL-IQSDMLRTWRRLKKKLDE----ESITFGSEF 292
              +MI  GL P  V + +L +G     D+++    + + +D+     +ITF S  
Sbjct: 504 KLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSI 559



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 151/327 (46%), Gaps = 50/327 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I+G+  + R   A +   EM   G+ P++VT+N L++ +C+           K  +
Sbjct: 345 YTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCK----------HKRSK 394

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYS------------------------------- 90
            A ++F  +  +G +PD+ S+SI+LH Y+                               
Sbjct: 395 EAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILI 454

Query: 91  RAHQPQLSLDK----LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
            AH  +  +D+       M+ +G+ P V TY++V+  LC  GR+ DA E L +M+  G+ 
Sbjct: 455 NAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLK 514

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+   Y+   + +    D   A +L  +M + G+  PN+  ++ +I       R+   ++
Sbjct: 515 PNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQD 574

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++N V   G  PD+ ++  LI G C   K  +A      M+  G  P  VT+ TL  G  
Sbjct: 575 VFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYF 634

Query: 267 QS----DMLRTWRR-LKKKLDEESITF 288
           +S    D L  +R  L K++   ++T+
Sbjct: 635 KSGRIDDGLILFREMLCKRVKPTTVTY 661



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 121/269 (44%), Gaps = 16/269 (5%)

Query: 9   WCKINRIDMA-ERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVF 67
            C   R D A    L  M E G  P+  +YN ++  +C        E  +  +R  +   
Sbjct: 210 LCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLC--GGSRSQEALDMLLRMTKG-- 265

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127
                 G  PDV S+++V+H      +   + +  N M +KG+ P V TY+S+V  LC  
Sbjct: 266 -----DGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKA 320

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
             ++ AE +L +M  N + P   TY      Y        A K++++M  +GL +P++ +
Sbjct: 321 RAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGL-IPDIVT 379

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           +N L+       R     EI++ +   G  PD+ SY++L+HG   + ++ +    F  M 
Sbjct: 380 FNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMT 439

Query: 248 EKGLLPQKVTFETLY-----RGLIQSDML 271
           + G++     F  L      RG++   +L
Sbjct: 440 DNGIVADSHCFNILINAHAKRGMMDEALL 468



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 20/269 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I   C++ R+  A   L +MI  G++PN V Y+ L+ G C    L           
Sbjct: 485 YATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDL----------I 534

Query: 62  NAEKVFDEMRVRGI-EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            A+++  EM  +GI  P++T FS ++H      +   + D  N +   G  P + T++S+
Sbjct: 535 KAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSL 594

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G+++ A  +L  MV  G  P   TY+     Y      +  + L+R+M    L
Sbjct: 595 IDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREM----L 650

Query: 181 C---VPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           C    P   +Y++++ G+F A  R    +++++++  SG    + +YT+++ GLC     
Sbjct: 651 CKRVKPTTVTYSLVLDGLFRA-GRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCT 709

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            EA   F ++    L  +     T+   L
Sbjct: 710 DEAITLFHKLGAMNLKFEIAILNTMIHAL 738



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 117/266 (43%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++S+I+  C   R+  A+     +I  G  P++ T+N L++G C    +           
Sbjct: 556 FSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMD---------- 605

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V D M   G EPDV ++S +++ Y ++ +    L     M  K + PT  TYS V+
Sbjct: 606 KAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVL 665

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR   A+++  EM+ +G   S  TY    +        + A+ L+ ++    L 
Sbjct: 666 DGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLK 725

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              +   N +I     + R +   +++  V  SGL P+  +Y ++I  L ++   +EA  
Sbjct: 726 F-EIAILNTMIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADI 784

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
            F  M + G  P       + R L+Q
Sbjct: 785 MFSSMEKTGCAPSSRLLNDIIRMLLQ 810



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 125/268 (46%), Gaps = 12/268 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGV-EPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           +Y SLI G+C    +  A+  + EM+++G+  PN+  ++ +++ +C           E  
Sbjct: 519 VYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCN----------EGR 568

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           + NA+ VF+ +   G  PD+ +F+ ++  Y    +   +   L+ M   G  P V TYS+
Sbjct: 569 VMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYST 628

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++      GRI+D   L  EM+   V P+  TY+            + A K++ +M E G
Sbjct: 629 LINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESG 688

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
             + ++ +Y I++      N  D    +++ +    L  ++     +IH L + ++ +EA
Sbjct: 689 TAM-SISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEA 747

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              F  +   GL+P   T+  +   L++
Sbjct: 748 HDLFASVSASGLVPNASTYGVMIINLLK 775



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 117/246 (47%), Gaps = 23/246 (9%)

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ-------PQLSLDKLNFM--KEKG 109
           +  +A  +FDE+  +       + +  L   +RA         P L++   N +  +E G
Sbjct: 98  STEDAHHLFDELLRQDTPVHGRALNGFLAALARARDSVACSDAPALAVALFNRICREEAG 157

Query: 110 --ICP-TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE--YRGRKD 164
             + P TV TY  ++ C C   R +        ++R G+       N F K   Y  R D
Sbjct: 158 PRVVPLTVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTD 217

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR----MDMVREIWNDVKGSGLGPDL 220
              +M L+R M E G CVP+  SYN +I      +R    +DM+  +    KG G  PD+
Sbjct: 218 EALSMLLHR-MSELG-CVPDAFSYNTVIKSLCGGSRSQEALDMLLRM---TKGDGCSPDV 272

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK 280
            SYTM+IHGL  + +  +AC  F EM++KG++P  VT+ ++   L ++  +     + ++
Sbjct: 273 VSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQ 332

Query: 281 LDEESI 286
           + + SI
Sbjct: 333 MFDNSI 338


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 128/266 (48%), Gaps = 15/266 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+ K   +D A     +MIE+ V P+VVTYN L++G+C+   +  SER      
Sbjct: 160 YNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSER------ 213

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               V ++M   GI P+  +++ +++ YS A   + S+     M   G+ P V   +S +
Sbjct: 214 ----VLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFI 269

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   RI++A+++   MV  G  P+  +Y+     Y           L   M   G+ 
Sbjct: 270 HALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGI- 328

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN   +NILI  +     MD    I+ D++  G+ PD  ++  +I  LC   +  +A  
Sbjct: 329 VPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALH 388

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
            F  M++ G+ P     E +YR LIQ
Sbjct: 389 KFNHMVDIGVPPS----EAVYRCLIQ 410



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 133/319 (41%), Gaps = 45/319 (14%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           S I+  C+ NRI  A+     M+ +G +PN+++Y+ LL+G             E    N 
Sbjct: 267 SFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAA----------EGCFANM 316

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             + + M  +GI P+   F+I+++ Y+R      ++     M+ KG+ P   T+++V+  
Sbjct: 317 NSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISS 376

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV- 182
           LC  GR++DA      MV  GV PS   Y C  +      +   A +L  +M    +   
Sbjct: 377 LCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPP 436

Query: 183 ----------------------------------PNMHSYNILIGMFMALNRMDMVREIW 208
                                             PN+ ++N L+  +  +  M+    + 
Sbjct: 437 GVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALL 496

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           + +   G+ P+   Y  L+ G C+  +  +A   F +M+ KG+ P  V +  +  GL Q+
Sbjct: 497 DAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQA 556

Query: 269 DMLRTWRRLKKKLDEESIT 287
                 +++  ++ E   T
Sbjct: 557 RRTTAAKKMFHEMIESGTT 575



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/347 (20%), Positives = 135/347 (38%), Gaps = 60/347 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           + ++I   C+I R+D A      M++ GV P+   Y  L+ G C    L           
Sbjct: 370 FATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMM 429

Query: 51  -----HPSERFEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                 P  ++  +I N           + + D M   G  P+V +F+ ++  Y      
Sbjct: 430 NKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNM 489

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + +   L+ M   GI P    Y ++V   C  GRI+DA  +  +M+  GV P++  YN  
Sbjct: 490 EEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNII 549

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVP-------------------------------- 183
                  +    A K++ +M E G  V                                 
Sbjct: 550 LHGLFQARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNV 609

Query: 184 --NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++ ++NI+I   + + R    +E++  +   GL P + +Y ++I  L +++ ++EA  
Sbjct: 610 KFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADN 669

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
            F+ + + G  P       + R L++   +         +DE ++T 
Sbjct: 670 LFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYLSIIDENNLTL 716



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 126/266 (47%), Gaps = 20/266 (7%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
           P + TYN+L++  C R  +H  E        A  VF  +   G+ PDV S++ ++  +S+
Sbjct: 120 PTIYTYNILID--CYR-RMHRPEL-------ALAVFGRLLRTGLGPDVCSYNTLIDGFSK 169

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
             +   + +    M E+ + P V TY+S++  LC    +  +E +L +MV  G+ P+ +T
Sbjct: 170 EGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKT 229

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGL--CVPNMHSYNILIGMFMALNRMDMVREIWN 209
           YN     Y        +++++++M   GL  CV N +S+   I      NR+   ++I++
Sbjct: 230 YNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSF---IHALCRHNRIKEAKDIFD 286

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR-----G 264
            +   G  P++ SY+ L+HG   +  +         M+ KG++P    F  L       G
Sbjct: 287 SMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCG 346

Query: 265 LIQSDMLRTWRRLKKKLDEESITFGS 290
           ++   ML       K +  +++TF +
Sbjct: 347 MMDKAMLIFEDMQNKGMIPDTVTFAT 372



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 1/226 (0%)

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           P + +++I++  Y R H+P+L+L     +   G+ P V +Y++++      G ++ A EL
Sbjct: 120 PTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYEL 179

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
             +M+   V P   TYN         K+   + ++  QM + G+  PN  +YN LI  + 
Sbjct: 180 FYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGI-RPNNKTYNSLIYGYS 238

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
                     ++ ++  SGL P + +    IH LC   + KEA   F  M+ KG  P  +
Sbjct: 239 TAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNII 298

Query: 257 TFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR 302
           ++ TL  G            L   +  + I     F N     Y R
Sbjct: 299 SYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYAR 344



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 112/260 (43%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + SL+ G+C +  ++ A   L  M   G+EPN   Y  L++G C+             I 
Sbjct: 476 FNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGR----------ID 525

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  VF +M  +G++P    ++I+LH   +A +   +    + M E G   ++ TY  V+
Sbjct: 526 DALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYGVVL 585

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC     ++A  LL ++    V     T+N              A +L+  +   GL 
Sbjct: 586 GGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGL- 644

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP +H+YN++I   +     +    ++  V+ SG  PD      ++  L +K +  +A  
Sbjct: 645 VPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKASN 704

Query: 242 YFVEMIEKGLLPQKVTFETL 261
           Y   + E  L  +  T   L
Sbjct: 705 YLSIIDENNLTLEASTISLL 724



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 114/263 (43%), Gaps = 30/263 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV--CRRASLHPSERFEK 58
           +Y +L+ G+CK  RID A     +M+ +GV+P  V YN++L+G+   RR +         
Sbjct: 510 IYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTA-------- 561

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR---AHQPQLSLDKLNFMKEKGICPTVA 115
               A+K+F EM   G    + ++ +VL    R     +  + L+KL  M  K     + 
Sbjct: 562 ----AKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKF---DII 614

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           T++ V+  +   GR ++A+EL   +   G+ P+  TYN         +    A  L+  +
Sbjct: 615 TFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISV 674

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           ++ G   P+    N ++ M +    +       + +  + L  +  + ++L      + K
Sbjct: 675 EKSGR-APDSRLLNHIVRMLLKKAEVAKASNYLSIIDENNLTLEASTISLLASLFSREGK 733

Query: 236 WKEACQYFVEMIEKGLLPQKVTF 258
            +E  +         LLP K  F
Sbjct: 734 CREHIK---------LLPAKYQF 747


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 134/281 (47%), Gaps = 10/281 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT ++   CK  R+  A   L EMI  G  P ++T+N L++G CR          EK +
Sbjct: 119 MYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCR----------EKNL 168

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+ +   M   G++ DV +++ ++    +A + Q +   L  MK  G  P V  YSS 
Sbjct: 169 EMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSF 228

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  LC  G++ +A ++L +M  +   P+  TYN            + A+++  QM     
Sbjct: 229 VYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDG 288

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C  N+  Y+ ++     L R    R +   +  +G  PD+ +Y+ L++GLC+  K +EA 
Sbjct: 289 CGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAV 348

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +   EM  +G  P  VT+ +L  GL     L    R+ +++
Sbjct: 349 EAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEM 389



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 140/282 (49%), Gaps = 13/282 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L+ G+ K  R    ER L  M  RG++PNVV+YN LL G+C+    H          
Sbjct: 13  FNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWH---------- 62

Query: 62  NAEKVFDEMRVRG--IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
            AE++  +M  RG    PD+ ++S +L  Y +A + + S + L  +  +G+ P    Y+ 
Sbjct: 63  EAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTK 122

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           V+  LC   R+ +A ELL EM+R G CP+  T+N         K+   A  L + M   G
Sbjct: 123 VMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASG 182

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +   ++ +YN L+       R+    ++   +K SG  PD+ +Y+  ++GLC+  K   A
Sbjct: 183 V-KADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNA 241

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            Q   +M +    P  VT+ T+  GL +S  + T   + +++
Sbjct: 242 HQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQM 283



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 13/242 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S +YG CK  ++  A + L +M +   +PNVVTYN +L+G+C+   +  +    + + 
Sbjct: 225 YSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMA 284

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +++         G   +V  +S V+    +  + Q +   +  M   G  P V TYSS+V
Sbjct: 285 SSD---------GCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLV 335

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
             LC  G+IE+A E + EM   G  P+A TY               A ++  +M   G  
Sbjct: 336 NGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGG 395

Query: 181 ---CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
              C P++ +YN LIG      R+D   + +  ++  G  PD  SY+ ++ GL    +  
Sbjct: 396 GDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRAL 455

Query: 238 EA 239
           +A
Sbjct: 456 QA 457



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 140/300 (46%), Gaps = 22/300 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G C+   ++MA+  L  M   GV+ +VVTYN L++G+C+   L           
Sbjct: 155 FNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQ---------- 204

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE++ + M+  G  PDV ++S  ++   ++ +   +   L  M++    P V TY++++
Sbjct: 205 EAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTIL 264

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCP-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             LC  G+I+ A E++ +M  +  C  +   Y+              A  +   M   G 
Sbjct: 265 DGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAG- 323

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P++ +Y+ L+       +++   E   ++   G  P+  +Y  L+HGLC   +  EA 
Sbjct: 324 CRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAE 383

Query: 241 QYFVEMIEKGLL-----PQKVTFETLYRGLIQS----DMLRTWRRLKKK-LDEESITFGS 290
           +   EM   G       P   T+  L  GL ++    D L+ ++R++ +  D + +++ +
Sbjct: 384 RMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYST 443



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 36/231 (15%)

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           G  P+  +F+ +++ +S+  +P      L  M  +GI P V +Y+ +++ LC   R  +A
Sbjct: 5   GCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEA 64

Query: 134 EELLGEMVRNG--VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL----------- 180
           EEL+ +M+  G    P   TY+     Y        + +L +++   GL           
Sbjct: 65  EELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVM 124

Query: 181 -----------------------CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
                                  C P + ++N LI        ++M   +   +  SG+ 
Sbjct: 125 ASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVK 184

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            D+ +Y  L+ GLC+  + +EA Q    M   G  P  V + +   GL +S
Sbjct: 185 ADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKS 235



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 1/161 (0%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M   G  P   T++++V      GR  D E LL  M   G+ P+  +YN   +     + 
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 165 ANGAMKLYRQM-KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSY 223
            + A +L R M    G   P++ +Y+ L+  +    +++  RE+  +V   GL PD   Y
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           T ++  LC+  +  EA +   EMI  G  P  +TF TL  G
Sbjct: 121 TKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISG 161



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 2/103 (1%)

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN  ++N L+  F    R      +   +   G+ P++ SY  L+ GLC+ ++W EA 
Sbjct: 6   CPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAE 65

Query: 241 QYFVEMIEKG--LLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +   +MI +G    P  VT+ TL  G  ++  +   R L K++
Sbjct: 66  ELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEV 108


>gi|125528152|gb|EAY76266.1| hypothetical protein OsI_04202 [Oryza sativa Indica Group]
          Length = 528

 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 148/290 (51%), Gaps = 26/290 (8%)

Query: 2   YTSLIYGWCKINR-IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +  ++ GWC + R +  A+RF   M  +G++ +VV+Y  +++   +  SL          
Sbjct: 251 FNVVLNGWCNMVRSVREAKRFWNAMEIKGIKRDVVSYGSMISCFSKAGSLD--------- 301

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               K+F+ M+  G+ PD   ++ V++  ++      +   +  M+EKG+ P  AT++S+
Sbjct: 302 -TVMKLFNRMKEAGVVPDRKIYNAVVYALAKGRCVNEAKALVRSMEEKGVAPDTATFNSL 360

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++ LC   ++++A ++L +M+  G+ PS  T++      R   +      L  +MKE   
Sbjct: 361 IRPLCKARQVQEARKMLDDMLGRGLSPSVRTFHALLDVARSPIEV---FDLLDKMKELQ- 416

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P M ++ +LI  F    + D V ++W+ +  +GL PD  +Y +LIHGL    + +E+ 
Sbjct: 417 CDPEMDTFIMLIRKFCRWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEESA 476

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
           +Y+ EM  KG  P+K T E          M++ W    ++L + S + GS
Sbjct: 477 KYYEEMKAKGFPPEKKTEE----------MIQAWLS-GRELAKASASVGS 515



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 13/180 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +++Y   K   ++ A+  +  M E+GV P+  T+N L+  +C+           + +
Sbjct: 321 IYNAVVYALAKGRCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCK----------ARQV 370

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A K+ D+M  RG+ P V +F  +L V   A  P    D L+ MKE    P + T+  +
Sbjct: 371 QEARKMLDDMLGRGLSPSVRTFHALLDV---ARSPIEVFDLLDKMKELQCDPEMDTFIML 427

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C   + +  E+L   M  NG+ P    Y               + K Y +MK  G 
Sbjct: 428 IRKFCRWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEESAKYYEEMKAKGF 487



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 108/251 (43%), Gaps = 16/251 (6%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G  P    Y+ +L      A L    RF+    +A  + D+MR R       +  +++  
Sbjct: 140 GYAPGRHAYHSML------AILAKHRRFD----DARALLDQMR-RSSLASPAAVMLLIRR 188

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP- 147
           Y  A     ++     +   G  P VA +  ++  LC    ++DAE LL  +      P 
Sbjct: 189 YCAARDVAGAVAAFRALPSLGFRPGVAEFHGLLTALCRYKNVQDAEHLL--LSSEKEFPF 246

Query: 148 SAETYNCFFKEY-RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
             +++N     +    +    A + +  M+  G+   ++ SY  +I  F     +D V +
Sbjct: 247 ETKSFNVVLNGWCNMVRSVREAKRFWNAMEIKGI-KRDVVSYGSMISCFSKAGSLDTVMK 305

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++N +K +G+ PD   Y  +++ L + +   EA      M EKG+ P   TF +L R L 
Sbjct: 306 LFNRMKEAGVVPDRKIYNAVVYALAKGRCVNEAKALVRSMEEKGVAPDTATFNSLIRPLC 365

Query: 267 QSDMLRTWRRL 277
           ++  ++  R++
Sbjct: 366 KARQVQEARKM 376


>gi|297720523|ref|NP_001172623.1| Os01g0816000 [Oryza sativa Japonica Group]
 gi|56785065|dbj|BAD82704.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125572420|gb|EAZ13935.1| hypothetical protein OsJ_03862 [Oryza sativa Japonica Group]
 gi|255673815|dbj|BAH91353.1| Os01g0816000 [Oryza sativa Japonica Group]
          Length = 530

 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 148/290 (51%), Gaps = 26/290 (8%)

Query: 2   YTSLIYGWCKINR-IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +  ++ GWC + R +  A+RF   M  +G++ +VV+Y  +++   +  SL          
Sbjct: 253 FNVVLNGWCNMVRSVREAKRFWNAMEIKGIKRDVVSYGSMISCFSKAGSLD--------- 303

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               K+F+ M+  G+ PD   ++ V++  ++      +   +  M+EKG+ P  AT++S+
Sbjct: 304 -TVMKLFNRMKEAGVIPDRKIYNAVVYALAKGQCVNEAKALVRSMEEKGVAPDTATFNSL 362

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++ LC   ++++A ++L +M+  G+ PS  T++      R   +      L  +MKE   
Sbjct: 363 IRPLCKARQVQEARKMLDDMLGRGLSPSVRTFHALLDVARSPIEV---FDLLDKMKELQ- 418

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P M ++ +LI  F    + D V ++W+ +  +GL PD  +Y +LIHGL    + +E+ 
Sbjct: 419 CDPEMDTFIMLIRKFCRWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEESA 478

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
           +Y+ EM  KG  P+K T E          M++ W    ++L + S + GS
Sbjct: 479 KYYEEMKAKGFPPEKKTEE----------MIQAWLS-GRELAKASASVGS 517



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 13/180 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +++Y   K   ++ A+  +  M E+GV P+  T+N L+  +C+           + +
Sbjct: 323 IYNAVVYALAKGQCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCK----------ARQV 372

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A K+ D+M  RG+ P V +F  +L V   A  P    D L+ MKE    P + T+  +
Sbjct: 373 QEARKMLDDMLGRGLSPSVRTFHALLDV---ARSPIEVFDLLDKMKELQCDPEMDTFIML 429

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C   + +  E+L   M  NG+ P    Y               + K Y +MK  G 
Sbjct: 430 IRKFCRWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEESAKYYEEMKAKGF 489



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 6/218 (2%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  + D+MR R       +  +++  Y  A     ++     +   G  P VA +  ++
Sbjct: 165 DARALLDQMR-RSSLASPAAVMLLIRRYCAARDVAGAVAAFRALPNLGFRPGVAEFHGLL 223

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCP-SAETYNCFFKEY-RGRKDANGAMKLYRQMKEDG 179
             LC    ++DAE LL  +      P   +++N     +    +    A + +  M+  G
Sbjct: 224 TALCRYKNVQDAEHLL--LSSEKEFPFETKSFNVVLNGWCNMVRSVREAKRFWNAMEIKG 281

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +   ++ SY  +I  F     +D V +++N +K +G+ PD   Y  +++ L + Q   EA
Sbjct: 282 I-KRDVVSYGSMISCFSKAGSLDTVMKLFNRMKEAGVIPDRKIYNAVVYALAKGQCVNEA 340

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
                 M EKG+ P   TF +L R L ++  ++  R++
Sbjct: 341 KALVRSMEEKGVAPDTATFNSLIRPLCKARQVQEARKM 378


>gi|225461528|ref|XP_002282646.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Vitis vinifera]
          Length = 546

 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 130/253 (51%), Gaps = 14/253 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++ GWC +  +  A+RF  ++I    +P+  TY + +N + +   L            A 
Sbjct: 265 ILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLS----------TAV 314

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           K+F  M  +G  PDV   + ++       +   +L+ L  M E+   P VATY+S++K L
Sbjct: 315 KLFQAMWEKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHL 374

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C   R E   ELL +M + G  P+A TY    K  +  ++  G ++   +M+ +G C  N
Sbjct: 375 CKIQRFEKVYELLDDMEQKGCLPNARTYGYLLKSTKKPEEVPGILE---RMERNG-CRMN 430

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
              YN+++ ++M       +R   ++++ +G+GPD  +YT++IHGL +K +  +A  YF 
Sbjct: 431 SDCYNLILKLYMDWGYELKLRSTLDEMERNGMGPDQRTYTIMIHGLYDKGRMDDALSYFK 490

Query: 245 EMIEKGLLPQKVT 257
           +M   G++P+  T
Sbjct: 491 QMTLMGMVPEPRT 503



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 114/254 (44%), Gaps = 12/254 (4%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           ++ R     +   EM +R    N  T+ VLLN   R A+ H +E        A K+F++ 
Sbjct: 167 RMRRFHEMTQLFDEMSKRKGLVNERTFGVLLN---RYAAAHKTE-------EAVKIFNKR 216

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
           +  G E D+ +F  +L    R    +++ + L   K+    P + + + ++   C  G +
Sbjct: 217 KGLGFELDLIAFQTLLMSLCRYKHVEMA-EFLFHSKKNEFPPDIKSMNVILNGWCVLGSL 275

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
            +A+    +++ +   P   TY  F          + A+KL++ M E G C P++   N 
Sbjct: 276 REAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKG-CNPDVAICNC 334

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           +I       R+    E+  ++      PD+ +Y  LI  LC+ Q++++  +   +M +KG
Sbjct: 335 IIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKG 394

Query: 251 LLPQKVTFETLYRG 264
            LP   T+  L + 
Sbjct: 395 CLPNARTYGYLLKS 408



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 98/240 (40%), Gaps = 12/240 (5%)

Query: 26  IERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85
           IE G  P    +N +L+ + R    H             ++FDEM  R    +  +F ++
Sbjct: 147 IESGYSPGCGVHNEILDILGRMRRFH----------EMTQLFDEMSKRKGLVNERTFGVL 196

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           L+ Y+ AH+ + ++   N  K  G    +  + +++  LC    +E AE  L    +N  
Sbjct: 197 LNRYAAAHKTEEAVKIFNKRKGLGFELDLIAFQTLLMSLCRYKHVEMAE-FLFHSKKNEF 255

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P  ++ N     +        A + +  +     C P+  +Y I I       ++    
Sbjct: 256 PPDIKSMNVILNGWCVLGSLREAKRFWNDIITSK-CKPDKFTYGIFINSLTKAGKLSTAV 314

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +++  +   G  PD+     +I  LC K++  EA +   EM E+   P   T+ +L + L
Sbjct: 315 KLFQAMWEKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHL 374



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 19/173 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI   CKI R +     L +M ++G  PN  TY  LL     +++  P E       
Sbjct: 367 YNSLIKHLCKIQRFEKVYELLDDMEQKGCLPNARTYGYLL-----KSTKKPEE------- 414

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + + M   G   +   ++++L +Y            L+ M+  G+ P   TY+ ++
Sbjct: 415 -VPGILERMERNGCRMNSDCYNLILKLYMDWGYELKLRSTLDEMERNGMGPDQRTYTIMI 473

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAET------YNCFFKEYRGRKDANGA 168
             L   GR++DA     +M   G+ P   T       N   KE     +  GA
Sbjct: 474 HGLYDKGRMDDALSYFKQMTLMGMVPEPRTTLLVNAMNIKLKEREAEPEGKGA 526



 Score = 44.7 bits (104), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 32/171 (18%), Positives = 71/171 (41%), Gaps = 2/171 (1%)

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
           E G  P    ++ ++  L    R  +  +L  EM +     +  T+      Y       
Sbjct: 148 ESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKTE 207

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            A+K++ + K  G  + ++ ++  L+        ++M   +++  K     PD+ S  ++
Sbjct: 208 EAVKIFNKRKGLGFEL-DLIAFQTLLMSLCRYKHVEMAEFLFHSKKNE-FPPDIKSMNVI 265

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           ++G C     +EA +++ ++I     P K T+      L ++  L T  +L
Sbjct: 266 LNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKL 316


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 154/340 (45%), Gaps = 61/340 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI  +CK+   D A++ L EM ERG   N VTYNVL+ G+CR  ++  +  F+K + 
Sbjct: 247 YSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 306

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +                         A+ + DEM    ++P+V  ++ ++  + R     
Sbjct: 307 DYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNAD 366

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   +  M   G+ P   TY ++V+ LC  G+++ A  LL +MVR+   P   TYN   
Sbjct: 367 EAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLII 426

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI-------------------------- 190
           + +        A +L  +M+  G+  PN+++Y+I                          
Sbjct: 427 EGHFRHHSKKDAFRLLSEMENAGIS-PNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGL 485

Query: 191 ---------LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
                    LI  +     + +  EI++ +    + PDL  Y  LI GL +  + +E+ +
Sbjct: 486 KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTK 545

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           YF +M E+GLLP + T+  L  G +++  L +  +L +++
Sbjct: 546 YFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRM 585



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 142/285 (49%), Gaps = 14/285 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL-HPSERFEKT 59
           +Y +LI G+ +    D A + + EM+  GV+PN +TY+ L+ G+C+   +   S   ++ 
Sbjct: 351 VYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQM 410

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +R++ +           PD  ++++++  + R H  + +   L+ M+  GI P V TYS 
Sbjct: 411 VRDSHR-----------PDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSI 459

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC  G  E A +LL EM   G+ P+A  Y      Y    + + A +++ +M +  
Sbjct: 460 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 519

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           + +P+++ YN LI     + R++   + +  ++  GL P+  +Y+ LIHG  +    + A
Sbjct: 520 V-LPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESA 578

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKKKLDE 283
            Q    M++ GL P  V +  L     +SD + +     K  LD+
Sbjct: 579 EQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQ 623



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 136/294 (46%), Gaps = 16/294 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I+G C+    + A   L EM  +G++PN   Y  L++G CR          E  + 
Sbjct: 457 YSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCR----------EGNVS 506

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++FD+M    + PD+  ++ ++   S+  + + S      M+E+G+ P   TYS ++
Sbjct: 507 LACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLI 566

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G +E AE+L+  M+  G+ P+   Y    + Y    D       ++ M + G+ 
Sbjct: 567 HGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVM 626

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N   Y ILI    +   M+    + + ++ +G  PD+  Y+ LI GLC+    ++A  
Sbjct: 627 LDN-RIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFG 685

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGS 290
              EM +KG+ P  V +  L  GL +S  +   R      L K L    +T+ S
Sbjct: 686 ILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTS 739



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 144/356 (40%), Gaps = 64/356 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y SLI+G  K+ R++ + ++  +M ERG+ PN  TY+ L++G  +   L  +E+      
Sbjct: 527 YNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRML 586

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  I      F  M  +G+  D   + I++H  S +   +
Sbjct: 587 DTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNME 646

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L+ +++ G  P V  YSS++  LC     E A  +L EM + GV P+   YN   
Sbjct: 647 AAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALI 706

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                  D + A  ++  +   GL VPN  +Y  LI     +  +     ++N++  +G+
Sbjct: 707 DGLCKSGDISYARNVFNSILAKGL-VPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGI 765

Query: 217 GPD----------------------------------LDSYTMLIHGLCEKQKWKEACQY 242
            PD                                  + S+  L+ G C++ K +E  + 
Sbjct: 766 TPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKL 825

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
              ++ +GL+P  +T E +  GL ++  L     +  +L +++    SE    HF 
Sbjct: 826 LHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKT----SESAARHFS 877



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 121/267 (45%), Gaps = 12/267 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI+       ++ A R L  + + G  P+V  Y+ L++G+C+ A     +R     
Sbjct: 631 IYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTA-----DR----- 680

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + DEM  +G++P++  ++ ++    ++     + +  N +  KG+ P   TY+S+
Sbjct: 681 EKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSL 740

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G I +A  L  EM+  G+ P A  Y+          D   AM L  +M   G 
Sbjct: 741 IDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH 800

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              ++ S+N L+  F    +M    ++ + + G GL P+  +   +I GL E  K  E  
Sbjct: 801 A--SISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVH 858

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQ 267
             FVE+ +K        F +L+  +I 
Sbjct: 859 TIFVELQQKTSESAARHFSSLFMDMIN 885



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 11/283 (3%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+  + K  R+  A   +  M +RG+ P++   N LL  + R             +    
Sbjct: 180 LVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLR----------ADAMALLW 229

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           KV + M   GI PDV ++S ++  Y +  +   +   L  M+E+G      TY+ ++  L
Sbjct: 230 KVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGL 289

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G +E+A     +M   G+ P   TY          + +N A  L  +M    L  PN
Sbjct: 290 CRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAEL-KPN 348

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           +  Y  LI  FM     D   ++  ++  +G+ P+  +Y  L+ GLC+  +   A     
Sbjct: 349 VVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLK 408

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +M+     P  +T+  +  G  +    +   RL  +++   I+
Sbjct: 409 QMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGIS 451



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 121/308 (39%), Gaps = 65/308 (21%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+SLI G CK    + A   L EM ++GV+PN+V YN L++G+C+             I
Sbjct: 666 VYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGD----------I 715

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  VF+ +  +G+ P+  +++ ++    +      +    N M   GI P    YS +
Sbjct: 716 SYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL 775

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
                S G +E A  L+ EM   G   S  ++N     +  R      +KL   +   GL
Sbjct: 776 TTGCSSAGDLEQAMFLIEEMFLRGHA-SISSFNNLVDGFCKRGKMQETLKLLHVIMGRGL 834

Query: 181 CVPNMHSY-NILIGM------------FMALNR--------------MDMVRE------- 206
            VPN  +  NI+ G+            F+ L +              MDM+ +       
Sbjct: 835 -VPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDV 893

Query: 207 ------------------IWNDVKGSGLGP-DLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
                             +  DV  +   P    SY  ++  LC K K  EA     EM 
Sbjct: 894 VDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMD 953

Query: 248 EKGLLPQK 255
           ++G+ P +
Sbjct: 954 KRGICPSE 961


>gi|147793827|emb|CAN62355.1| hypothetical protein VITISV_022418 [Vitis vinifera]
          Length = 546

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 130/253 (51%), Gaps = 14/253 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++ GWC +  +  A+RF  ++I    +P+  TY + +N + +   L            A 
Sbjct: 265 ILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLS----------TAV 314

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           K+F  M  +G  PDV   + ++       +   +L+ L  M E+   P VATY+S++K L
Sbjct: 315 KLFQAMWEKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHL 374

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C   R E   ELL +M + G  P+A TY    K  +  ++  G ++   +M+ +G C  N
Sbjct: 375 CKIQRFEKVYELLDDMEQKGCLPNARTYGYLLKSTKKPEEVPGILE---RMERNG-CRMN 430

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
              YN+++ ++M       +R   ++++ +G+GPD  +YT++IHGL +K +  +A  YF 
Sbjct: 431 SDCYNLILKLYMDWGYELKLRSTLDEMERNGMGPDQRTYTIMIHGLYDKGRMDDALSYFK 490

Query: 245 EMIEKGLLPQKVT 257
           +M   G++P+  T
Sbjct: 491 QMTLMGMVPEPRT 503



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 113/254 (44%), Gaps = 12/254 (4%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           ++ R     +   EM +R    N  T+ VLLN   R A+ H +E        A K+F + 
Sbjct: 167 RMRRFHEMTQLFDEMSKRKGLXNERTFGVLLN---RYAAAHKTE-------EAVKIFYKR 216

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
           +  G E D+ +F  +L    R    +++ + L   K+    P + + + ++   C  G +
Sbjct: 217 KGLGFELDLIAFQTLLMSLCRYKHVEMA-EFLFHSKKNEFPPDIKSMNVILNGWCVLGSL 275

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
            +A+    +++ +   P   TY  F          + A+KL++ M E G C P++   N 
Sbjct: 276 REAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKG-CNPDVAICNC 334

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           +I       R+    E+  ++      PD+ +Y  LI  LC+ Q++++  +   +M +KG
Sbjct: 335 IIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKG 394

Query: 251 LLPQKVTFETLYRG 264
            LP   T+  L + 
Sbjct: 395 CLPNARTYGYLLKS 408



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 96/239 (40%), Gaps = 12/239 (5%)

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
           E G  P    +N +L+ + R    H             ++FDEM  R    +  +F ++L
Sbjct: 148 ESGYSPGCGVHNEILDILGRMRRFH----------EMTQLFDEMSKRKGLXNERTFGVLL 197

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
           + Y+ AH+ + ++      K  G    +  + +++  LC    +E AE  L    +N   
Sbjct: 198 NRYAAAHKTEEAVKIFYKRKGLGFELDLIAFQTLLMSLCRYKHVEMAE-FLFHSKKNEFP 256

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P  ++ N     +        A + +  +     C P+  +Y I I       ++    +
Sbjct: 257 PDIKSMNVILNGWCVLGSLREAKRFWNDIITSK-CKPDKFTYGIFINSLTKAGKLSTAVK 315

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           ++  +   G  PD+     +I  LC K++  EA +   EM E+   P   T+ +L + L
Sbjct: 316 LFQAMWEKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHL 374



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 19/173 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI   CKI R +     L +M ++G  PN  TY  LL     +++  P E       
Sbjct: 367 YNSLIKHLCKIQRFEKVYELLDDMEQKGCLPNARTYGYLL-----KSTKKPEE------- 414

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + + M   G   +   ++++L +Y            L+ M+  G+ P   TY+ ++
Sbjct: 415 -VPGILERMERNGCRMNSDCYNLILKLYMDWGYELKLRSTLDEMERNGMGPDQRTYTIMI 473

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAET------YNCFFKEYRGRKDANGA 168
             L   GR++DA     +M   G+ P   T       N   KE     +  GA
Sbjct: 474 HGLYDKGRMDDALSYFKQMTLMGMVPEPRTTLLVNAMNIKLKEREAEPEGKGA 526



 Score = 44.3 bits (103), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 32/171 (18%), Positives = 71/171 (41%), Gaps = 2/171 (1%)

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
           E G  P    ++ ++  L    R  +  +L  EM +     +  T+      Y       
Sbjct: 148 ESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLXNERTFGVLLNRYAAAHKTE 207

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            A+K++ + K  G  + ++ ++  L+        ++M   +++  K     PD+ S  ++
Sbjct: 208 EAVKIFYKRKGLGFEL-DLIAFQTLLMSLCRYKHVEMAEFLFHSKKNE-FPPDIKSMNVI 265

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           ++G C     +EA +++ ++I     P K T+      L ++  L T  +L
Sbjct: 266 LNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKL 316


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 145/288 (50%), Gaps = 15/288 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G C   ++  A   +  M+E G +P++VTYN ++NG+CR  S   S  F+    
Sbjct: 161 FNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICR--SGDTSLAFD---- 214

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +  +M  R ++ DV ++S ++    R      ++     M+ KGI  +V TY+S+V
Sbjct: 215 ----MLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLV 270

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  G+  D   LL +MV   + P+  T+N     +        A +LY++M   G+ 
Sbjct: 271 RGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGIS 330

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN L+  +   NR+     + + +  +   PD+ ++T LI G C  ++  +  +
Sbjct: 331 -PNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMK 389

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
            F  + ++GL+   VT+  L +G  QS  +    +L ++L +E ++ G
Sbjct: 390 VFRNISKRGLVANAVTYSILVQGFCQSGKI----KLAEELFQEMVSHG 433



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 136/264 (51%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I   C+   ID A     EM  +G++ +VVTYN L+ G+C+    +      K   
Sbjct: 231 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLK--- 287

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                  +M  R I P+V +F+++L V+ +  + Q + +    M  +GI P + TY++++
Sbjct: 288 -------DMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLM 340

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R+ +A  +L  MVRN   P   T+    K Y   K  +  MK++R + + GL 
Sbjct: 341 DGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGL- 399

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V N  +Y+IL+  F    ++ +  E++ ++   G+ PD+ +Y +L+ GLC+  K ++A +
Sbjct: 400 VANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALE 459

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F ++ +  +    V + T+  G+
Sbjct: 460 IFEDLQKSKMDLGIVMYTTIIEGM 483



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 146/297 (49%), Gaps = 18/297 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +I  +C+  +   A   LG++++ G EP+  T+N L+NG+C           E  +  A 
Sbjct: 129 MINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLC----------LEGKVSKAV 178

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            + D M   G +PD+ +++ +++   R+    L+ D L  M+E+ +   V TYS+++  L
Sbjct: 179 VLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSL 238

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMKEDGLCVP 183
           C  G I+ A  L  EM   G+  S  TYN   +   +  K  +GA+ L   +  +   VP
Sbjct: 239 CRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE--IVP 296

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N+ ++N+L+ +F+   ++    E++ ++   G+ P++ +Y  L+ G C + +  EA    
Sbjct: 297 NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 356

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLKKK-LDEESITFGSEFQNY 295
             M+     P  VTF +L +G        D ++ +R + K+ L   ++T+    Q +
Sbjct: 357 DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGF 413



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 145/283 (51%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+ G CK  + +     L +M+ R + PNV+T+NVLL+   +          E  ++
Sbjct: 266 YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK----------EGKLQ 315

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +++ EM  RGI P++ +++ ++  Y   ++   + + L+ M      P + T++S++
Sbjct: 316 EANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLI 375

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R++D  ++   + + G+  +A TY+   + +        A +L+++M   G+ 
Sbjct: 376 KGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV- 434

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y IL+       +++   EI+ D++ S +   +  YT +I G+C+  K ++A  
Sbjct: 435 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWN 494

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KG+ P  +T+  +  GL +   L     L +K++E+
Sbjct: 495 LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEED 537



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 126/279 (45%), Gaps = 17/279 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+  + K  ++  A     EMI RG+ PN++TYN L++G C +  L           
Sbjct: 301 FNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSE--------- 351

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D M      PD+ +F+ ++  Y    +    +     + ++G+     TYS +V
Sbjct: 352 -ANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILV 410

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G+I+ AEEL  EMV +GV P   TY               A++++  +++  + 
Sbjct: 411 QGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 470

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWN---DVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           +  +    I+ GM     +   V + WN    +   G+ P++ +YT++I GLC+K    E
Sbjct: 471 LGIVMYTTIIEGMC----KGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE 526

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A     +M E G  P   T+ TL R  ++   L    +L
Sbjct: 527 ANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKL 565



 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 112/229 (48%), Gaps = 11/229 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSLI G+C + R+D   +    + +RG+  N VTY++L+ G C+             I+
Sbjct: 371 FTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGK----------IK 420

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE++F EM   G+ PDV ++ I+L       + + +L+    +++  +   +  Y++++
Sbjct: 421 LAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTII 480

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + +C  G++EDA  L   +   GV P+  TY         +   + A  L R+M+EDG  
Sbjct: 481 EGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG-N 539

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
            PN  +YN LI   +    +    ++  ++K  G   D  S  M+I  L
Sbjct: 540 APNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 588



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 98/196 (50%), Gaps = 11/196 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ G+C+  +I +AE    EM+  GV P+V+TY +LL+G+C    L           
Sbjct: 406 YSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEK--------- 456

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F++++   ++  +  ++ ++    +  + + + +    +  KG+ P V TY+ ++
Sbjct: 457 -ALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMI 515

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G + +A  LL +M  +G  P+  TYN   + +    D   + KL  +MK  G  
Sbjct: 516 SGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFS 575

Query: 182 VPNMHSYNILIGMFMA 197
             +  S  ++I M ++
Sbjct: 576 -ADASSIKMVIDMLLS 590



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 119/272 (43%), Gaps = 11/272 (4%)

Query: 16  DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI 75
           D A     EMI     P +V ++   + + R    +    F K          ++ + GI
Sbjct: 70  DDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCK----------QLELNGI 119

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
             ++ + +I+++ + R  +   +   L  + + G  P   T+++++  LC  G++  A  
Sbjct: 120 AHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVV 179

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           L+  MV NG  P   TYN          D + A  + R+M+E  +   ++ +Y+ +I   
Sbjct: 180 LVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNV-KADVFTYSTIIDSL 238

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
                +D    ++ +++  G+   + +Y  L+ GLC+  KW +      +M+ + ++P  
Sbjct: 239 CRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNV 298

Query: 256 VTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +TF  L    ++   L+    L K++    I+
Sbjct: 299 ITFNVLLDVFVKEGKLQEANELYKEMITRGIS 330



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 10/126 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT++I G CK  +++ A      +  +GV+PNV+TY V+++G+C++ SL          
Sbjct: 475 MYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE-------- 526

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +  +M   G  P+  +++ ++  + R      S   +  MK  G     ++   V
Sbjct: 527 --ANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMV 584

Query: 121 VKCLCS 126
           +  L S
Sbjct: 585 IDMLLS 590


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 140/311 (45%), Gaps = 45/311 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+G C   R   A   LG M+ +G+ PNV T+NVL++  C+          +  I 
Sbjct: 250 YNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCK----------DGMIS 299

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +   M   G+EPDV +++ V+  +    Q   ++     M  KG  P + TYSS++
Sbjct: 300 RAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLI 359

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
              C    I  A  LLGEMV +G+ P   T++     +        A +L+  M E    
Sbjct: 360 HGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQH 419

Query: 178 ----------DGLCVPNMHS--------------------YNILIGMFMALNRMDMVREI 207
                     DGL     HS                    YNI++    +  +++  +E+
Sbjct: 420 PNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQEL 479

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           ++ +   G+  D+ +YT +I GLC++    +A    ++M E G LP + T+    RGL+Q
Sbjct: 480 FSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNVFVRGLLQ 539

Query: 268 S-DMLRTWRRL 277
             D+ R+ + L
Sbjct: 540 RYDISRSTKYL 550



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 27/292 (9%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T +I   C +N        LG M + GV+P VVT+  L+NG+C   ++  + RF  ++ +
Sbjct: 110 TIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAARFADSLED 169

Query: 63  -------------------------AEKVFDEMRVRGIEPDVT-SFSIVLHVYSRAHQPQ 96
                                    A    ++++ R  + DV  ++S ++    +     
Sbjct: 170 MGHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVC 229

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+  + M  KGI P +  Y+S++  LC+ GR ++A  LLG M+R G+ P+ +T+N   
Sbjct: 230 EALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLV 289

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +      + A  +   M   G+  P++ +YN +I     L++M    +++  +   G 
Sbjct: 290 DNFCKDGMISRAKTIMGFMVHVGV-EPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGF 348

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            P+L +Y+ LIHG C+ +   +A     EM+  GL P  VT+ TL  G  ++
Sbjct: 349 LPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKA 400



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 130/285 (45%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++++   CK   +  A      M  +G++P++V YN L++G+C               +
Sbjct: 215 YSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRW----------K 264

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M  +GI P+V +F++++  + +      +   + FM   G+ P V TY+SV+
Sbjct: 265 EATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVI 324

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   ++ DA ++   M+  G  P+  TY+     +   K+ N A+ L  +M   GL 
Sbjct: 325 SGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLN 384

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +++ LIG F    + +  +E++  +      P+L +  +++ GL + Q   EA  
Sbjct: 385 -PDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAIS 443

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F EM +  L    V +  +  G+     L   + L   L  + I
Sbjct: 444 LFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQELFSCLPSKGI 488



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 26/221 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------------- 48
           Y+SLI+GWCK   I+ A   LGEM+  G+ P+VVT++ L+ G C+               
Sbjct: 355 YSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMH 414

Query: 49  --SLHPSERFEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
               HP+ +    I +          A  +F EM    +E +V  ++IVL       +  
Sbjct: 415 EHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLN 474

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + +  + +  KGI   V  Y++++K LC  G ++DAE LL +M  NG  P+  TYN F 
Sbjct: 475 DAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNVFV 534

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
           +    R D + + K    MK  GL   +  +  +LI  F A
Sbjct: 535 RGLLQRYDISRSTKYLLLMKGKGLS-ADATTTELLISYFSA 574



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 6/207 (2%)

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           GI+PDV + +I+++     +        L  M + G+ PTV T+++++  LC+ G +  A
Sbjct: 101 GIKPDVYTLTIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARA 160

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
                 +   G   ++ TY           D +GA+    ++K     +  + +Y+ ++ 
Sbjct: 161 ARFADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMD 220

Query: 194 MFMALNRMDMVREIWNDVKG---SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
              +L +  MV E  N   G    G+ PDL +Y  LIHGLC   +WKEA      M+ KG
Sbjct: 221 ---SLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKG 277

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWRRL 277
           ++P   TF  L     +  M+   + +
Sbjct: 278 IMPNVQTFNVLVDNFCKDGMISRAKTI 304



 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 11/151 (7%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           EM +  +E NVV YN++L+G+C    L+          +A+++F  +  +GI+ DV +++
Sbjct: 447 EMEKMNLELNVVIYNIVLDGMCSFGKLN----------DAQELFSCLPSKGIKIDVVAYT 496

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            ++    +      + + L  M+E G  P   TY+  V+ L     I  + + L  M   
Sbjct: 497 TMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNVFVRGLLQRYDISRSTKYLLLMKGK 556

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
           G+   A T       +   K+ N A+ ++ Q
Sbjct: 557 GLSADATTTELLISYFSANKE-NSALHVFLQ 586



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/116 (19%), Positives = 52/116 (44%), Gaps = 10/116 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  ++ G C   +++ A+     +  +G++ +VV Y  ++ G+C+          E  +
Sbjct: 459 IYNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCK----------EGLL 508

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
            +AE +  +M   G  P+  ++++ +    + +    S   L  MK KG+     T
Sbjct: 509 DDAENLLMKMEENGCLPNEFTYNVFVRGLLQRYDISRSTKYLLLMKGKGLSADATT 564


>gi|32489921|emb|CAE05513.1| OSJNBa0038P21.6 [Oryza sativa Japonica Group]
          Length = 648

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 128/266 (48%), Gaps = 15/266 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+ K   +D A     +MIE+ V P+VVTYN L++G+C+   +  SER      
Sbjct: 67  YNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSER------ 120

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               V ++M   GI P+  +++ +++ YS A   + S+     M   G+ P V   +S +
Sbjct: 121 ----VLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFI 176

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   RI++A+++   MV  G  P+  +Y+     Y           L   M   G+ 
Sbjct: 177 HALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGI- 235

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN   +NILI  +     MD    I+ D++  G+ PD  ++  +I  LC   +  +A  
Sbjct: 236 VPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALH 295

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
            F  M++ G+ P     E +YR LIQ
Sbjct: 296 KFNHMVDIGVPPS----EAVYRCLIQ 317



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 132/311 (42%), Gaps = 36/311 (11%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           S I+  C+ NRI  A+     M+ +G +PN+++Y+ LL+G             E    N 
Sbjct: 174 SFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAA----------EGCFANM 223

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             + + M  +GI P+   F+I+++ Y+R      ++     M+ KG+ P   T+++V+  
Sbjct: 224 NSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISS 283

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC  GR++DA      MV  GV PS   Y C  +      +   A +L  +M    +  P
Sbjct: 284 LCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPP 343

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY- 242
            +  ++ +I       R+   ++I + +  +G  P++ ++  L+ G C     +EA  Y 
Sbjct: 344 GVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEALHYL 403

Query: 243 -------------------------FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
                                    F EMIE G      T+  +  GL +++       L
Sbjct: 404 MLWHQLALNRIVTYMARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANML 463

Query: 278 KKKLDEESITF 288
            +KL   ++ F
Sbjct: 464 LEKLFAMNVKF 474



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 112/235 (47%), Gaps = 10/235 (4%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  VF  +   G+ PDV S++ ++  +S+  +   + +    M E+ + P V TY+S++ 
Sbjct: 48  ALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLID 107

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL-- 180
            LC    +  +E +L +MV  G+ P+ +TYN     Y        +++++++M   GL  
Sbjct: 108 GLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIP 167

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           CV N +S+   I      NR+   ++I++ +   G  P++ SY+ L+HG   +  +    
Sbjct: 168 CVVNCNSF---IHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMN 224

Query: 241 QYFVEMIEKGLLPQKVTFETLYR-----GLIQSDMLRTWRRLKKKLDEESITFGS 290
                M+ KG++P    F  L       G++   ML       K +  +++TF +
Sbjct: 225 SLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFAT 279



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 1/233 (0%)

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           MR+  + P   + S++  + +    P+L+L     +   G+ P V +Y++++      G 
Sbjct: 20  MRLLMLPPSTPTTSLIDVLPAECTGPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGE 79

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           ++ A EL  +M+   V P   TYN         K+   + ++  QM + G+  PN  +YN
Sbjct: 80  VDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGI-RPNNKTYN 138

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            LI  +           ++ ++  SGL P + +    IH LC   + KEA   F  M+ K
Sbjct: 139 SLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLK 198

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR 302
           G  P  +++ TL  G            L   +  + I     F N     Y R
Sbjct: 199 GPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYAR 251



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/314 (20%), Positives = 131/314 (41%), Gaps = 38/314 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + ++I   C+I R+D A      M++ GV P+   Y  L+ G C    L           
Sbjct: 277 FATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGEL----------V 326

Query: 62  NAEKVFDEMRVRGIEPD-VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            A+++  EM  + I P  V  FS +++   +  +     D ++ M + G  P V T++S+
Sbjct: 327 KAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSL 386

Query: 121 VKCLCSCGRIED--------------------------AEELLGEMVRNGVCPSAETYNC 154
           ++  C  G +E+                          A+++  EM+ +G   S +TY  
Sbjct: 387 MEGYCLVGNMEEALHYLMLWHQLALNRIVTYMARRTTAAKKMFHEMIESGTTVSIQTYGV 446

Query: 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
                      + A  L  ++    +   ++ ++NI+I   + + R    +E++  +   
Sbjct: 447 VLGGLCRNNCTDEANMLLEKLFAMNVKF-DIITFNIVISAMLKVGRRQEAKELFAAISTY 505

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTW 274
           GL P + +Y ++I  L +++ ++EA   F+ + + G  P       + R L++   +   
Sbjct: 506 GLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKA 565

Query: 275 RRLKKKLDEESITF 288
                 +DE ++T 
Sbjct: 566 SNYLSIIDENNLTL 579


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 142/293 (48%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+ K    D A     EM++R + P+VVTY+ ++  +C+           + + 
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCK----------GQAMD 248

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V   M   G+ P+  +++ +LH Y  + QP+ ++  L  M+  G+ P V TY+S++
Sbjct: 249 KAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLM 308

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A ++   M + G+ P   TY    + Y  +        L   M  +G+ 
Sbjct: 309 DYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIH 368

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ H +NILI  +    ++D    +++ ++  GL P++ +Y  +I  LC+     +A  
Sbjct: 369 -PDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAML 427

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           YF +MI++GL P  + + +L   L   D       L  ++ +  I   + F N
Sbjct: 428 YFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFN 480



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 134/292 (45%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           Y SL+   CK  R   A +    M +RG+EP++ TY  LL G   + +L           
Sbjct: 304 YNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMV 363

Query: 51  ----HPSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
               HP              ++ +  A  VF +MR  G+ P+V ++  V+ +  ++    
Sbjct: 364 RNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVD 423

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++     M ++G+ P +  Y+S++  LC   + + AEEL+ EM+  G+C +   +N   
Sbjct: 424 DAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSII 483

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +        + KL+  M   G+  PN+ +Y+ LI  +    +MD   ++ + +   G+
Sbjct: 484 HSHCKEGRVIESEKLFDLMVRIGV-KPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGM 542

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            PD  +Y  LI+G C   +  +A   F EM+  G+ P  +T+  + +GL  +
Sbjct: 543 KPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHT 594



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 142/295 (48%), Gaps = 11/295 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTSLI+  C  ++ D AE  + EM++RG+  N + +N +++  C+          E  +
Sbjct: 443 VYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCK----------EGRV 492

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             +EK+FD M   G++P+V ++S ++  Y  A +   +   L+ M   G+ P   TY+++
Sbjct: 493 IESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTL 552

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C   R++DA  L  EMV +GV P+  TYN   +     +    A +LY  + + G 
Sbjct: 553 INGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGT 612

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +  + +YNI++      N  D    ++ ++  + L  +  ++ ++I  L +  +  EA 
Sbjct: 613 QL-ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAK 671

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
             FV     GL+P   T+  +   +I   +L    +L   +++   T  S   N+
Sbjct: 672 DLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNF 726



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 134/292 (45%), Gaps = 26/292 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKT 59
           ++  LI  + K  ++D A     +M + G+ PNVVTY  ++  +C+  S+  +   FE+ 
Sbjct: 373 VFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQM 432

Query: 60  I------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           I                          AE++  EM  RGI  +   F+ ++H + +  + 
Sbjct: 433 IDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRV 492

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             S    + M   G+ P V TYS+++   C  G++++A +LL  M   G+ P   TYN  
Sbjct: 493 IESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTL 552

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y      + A+ L+++M   G+  PN+ +YNI++       R    +E++  +  SG
Sbjct: 553 INGYCRVSRMDDALALFKEMVSSGVS-PNIITYNIILQGLFHTRRTAAAKELYVGITKSG 611

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +L +Y +++HGLC+     EA + F  +    L  +  TF  +   L++
Sbjct: 612 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 663



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 134/299 (44%), Gaps = 20/299 (6%)

Query: 2   YTSLIYGWCKINRI-DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +T L+ G C   R  D  +  L  M E    P+V +  +LL G+C         R ++ +
Sbjct: 125 FTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLC------DENRSQEAL 178

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                + D+ R  G  PDV S++ V++ + +      +    + M ++ I P V TYSS+
Sbjct: 179 ELLHMMADD-RGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSI 237

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC    ++ A E+L  MV+NGV P+  TYN     Y   +    A+   ++M+ DG+
Sbjct: 238 IAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGV 297

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +YN L+       R    R+I++ +   GL PD+ +Y  L+ G   K    E  
Sbjct: 298 -EPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMH 356

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
                M+  G+ P    F  L     +          ++K+DE  + F S+ + +   P
Sbjct: 357 ALLDLMVRNGIHPDHHVFNILICAYAK----------QEKVDEAMLVF-SKMRQHGLNP 404



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 108/266 (40%), Gaps = 42/266 (15%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG---ICPTVATYS 118
           +A  VFDE+  RG    +   +  L   +R H P  ++ + N M   G   + PTV TY 
Sbjct: 33  DARHVFDELLRRGRGASIYGLNRALADVAR-HSPAAAVSRYNRMARAGAGKVTPTVHTYG 91

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL-YRQMKE 177
            ++ C C  GR++     LG +V+ G    A T+    K     K  + AM +  R+M E
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 178 --------------DGLC-----------------------VPNMHSYNILIGMFMALNR 200
                          GLC                        P++ SY  +I  F     
Sbjct: 152 LSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGD 211

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
            D     ++++    + PD+ +Y+ +I  LC+ Q   +A +    M++ G++P  +T+ +
Sbjct: 212 SDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNS 271

Query: 261 LYRGLIQSDMLRTWRRLKKKLDEESI 286
           +  G   S+  +      KK+  + +
Sbjct: 272 ILHGYCSSEQPKEAIGFLKKMRSDGV 297


>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
          Length = 663

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 127/263 (48%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C++  ++ A R   EM+E+G  P+V TY +L+ G     SL  +  F     
Sbjct: 410 YNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREF----- 464

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                FDEM  +G+ PD  +++  +           S      +  +GI     TY+ ++
Sbjct: 465 -----FDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYNILI 519

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G ++DAEEL+ +M+ NG+ P   TY C    +  R     A K +  M  DGL 
Sbjct: 520 DGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGL- 578

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y ++I  +     +      +  +   G+ P+  +Y +LIH LC   + + A +
Sbjct: 579 PPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAYR 638

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
           +F EM+E+GL+P K T+  L  G
Sbjct: 639 HFYEMLERGLVPNKYTYTLLIDG 661



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 130/299 (43%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G      +   +    EM   G+ P VVTYN +++G+ +             I 
Sbjct: 305 YNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQ----------IE 354

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+  F EMR  G+ PDV +++ +L+ Y +A   + +L     ++  G+ PTV TY+ ++
Sbjct: 355 AAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILI 414

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +E+A  L  EMV  G  P   TY    K            + + +M   GL 
Sbjct: 415 DGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGL- 473

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN  I   + L  +    ++   +   G+  D  +Y +LI GLC+    K+A +
Sbjct: 474 RPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNLKDAEE 533

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGSEFQNY 295
             ++MI  GL P  +T+  L     +   LR  R+     +   L   ++T+      Y
Sbjct: 534 LMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAY 592



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 122/264 (46%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+ G+CK      A    G++   G+ P V+TYN+L++G CR   L  + R +    
Sbjct: 375 YNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLK---- 430

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 +EM  +G  PDV +++I++          ++ +  + M  KG+ P    Y++ +
Sbjct: 431 ------EEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRI 484

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               + G I  + +L   ++  G+     TYN          +   A +L  QM  +GL 
Sbjct: 485 CAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGL- 543

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y  LI        +   R+ +ND+   GL P   +YT++IH  C +     A  
Sbjct: 544 QPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYG 603

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
           +F +M+E+G+ P ++T+  L   L
Sbjct: 604 WFRKMLEEGVEPNEITYNVLIHAL 627



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 126/263 (47%), Gaps = 14/263 (5%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           EM   GV P+V   N +L  V R A+     R++    +   V  EM   GIEP + +++
Sbjct: 186 EMASHGVAPDVKDCNKVLR-VLRDAA-----RWD----DMSAVHAEMLQLGIEPSIVTYN 235

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKG--ICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
            +L  +S+  +       L  M+ +G    P   TY+ V+  L   G +E+A EL+ EM 
Sbjct: 236 TLLDSFSKEGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEAAELVEEM- 294

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
           R     S+ TYN        R        L  +M+ +G+ +P + +YN +I   +   ++
Sbjct: 295 RLSKKASSFTYNPLITGLLARGFVKKVDDLQLEMENEGI-MPTVVTYNAMIHGLLQSGQI 353

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +  +  + +++  GL PD+ +Y  L++G C+    KEA   F ++   GL P  +T+  L
Sbjct: 354 EAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNIL 413

Query: 262 YRGLIQSDMLRTWRRLKKKLDEE 284
             G  +   L   RRLK+++ E+
Sbjct: 414 IDGYCRLGDLEEARRLKEEMVEQ 436



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 39/205 (19%)

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           L L     M   G+ P V   + V++ L    R +D   +  EM++ G+ PS  TYN   
Sbjct: 179 LCLSAFREMASHGVAPDVKDCNKVLRVLRDAARWDDMSAVHAEMLQLGIEPSIVTYNTLL 238

Query: 157 KEY--RGRKDANGAMKLYRQMKEDG-LCVPNMHSYNI----------------------- 190
             +   GRKD      L ++M+  G  C+PN  +YN+                       
Sbjct: 239 DSFSKEGRKDKID--MLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEAAELVEEMRL 296

Query: 191 -----------LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
                      LI   +A   +  V ++  +++  G+ P + +Y  +IHGL +  + + A
Sbjct: 297 SKKASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAA 356

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRG 264
              FVEM   GLLP  +T+ +L  G
Sbjct: 357 QAKFVEMRAMGLLPDVITYNSLLNG 381


>gi|302142966|emb|CBI20261.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 130/253 (51%), Gaps = 14/253 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++ GWC +  +  A+RF  ++I    +P+  TY + +N + +   L            A 
Sbjct: 228 ILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLS----------TAV 277

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           K+F  M  +G  PDV   + ++       +   +L+ L  M E+   P VATY+S++K L
Sbjct: 278 KLFQAMWEKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHL 337

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C   R E   ELL +M + G  P+A TY    K  +  ++  G ++   +M+ +G C  N
Sbjct: 338 CKIQRFEKVYELLDDMEQKGCLPNARTYGYLLKSTKKPEEVPGILE---RMERNG-CRMN 393

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
              YN+++ ++M       +R   ++++ +G+GPD  +YT++IHGL +K +  +A  YF 
Sbjct: 394 SDCYNLILKLYMDWGYELKLRSTLDEMERNGMGPDQRTYTIMIHGLYDKGRMDDALSYFK 453

Query: 245 EMIEKGLLPQKVT 257
           +M   G++P+  T
Sbjct: 454 QMTLMGMVPEPRT 466



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 108/239 (45%), Gaps = 14/239 (5%)

Query: 26  IERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85
           IE G  P    +N +L+ + R    H             ++FDEM  R    +  +F ++
Sbjct: 147 IESGYSPGCGVHNEILDILGRMRRFH----------EMTQLFDEMSKRKGLVNERTFGVL 196

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           L+ Y+ AH+ + +  K+ F K KG    + + + ++   C  G + +A+    +++ +  
Sbjct: 197 LNRYAAAHKTEEAAVKI-FYKRKGAW--IRSMNVILNGWCVLGSLREAKRFWNDIITSKC 253

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P   TY  F          + A+KL++ M E G C P++   N +I       R+    
Sbjct: 254 KPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKG-CNPDVAICNCIIDALCFKKRIPEAL 312

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           E+  ++      PD+ +Y  LI  LC+ Q++++  +   +M +KG LP   T+  L + 
Sbjct: 313 EVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKGCLPNARTYGYLLKS 371



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 19/173 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI   CKI R +     L +M ++G  PN  TY  LL     +++  P E       
Sbjct: 330 YNSLIKHLCKIQRFEKVYELLDDMEQKGCLPNARTYGYLL-----KSTKKPEE------- 377

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + + M   G   +   ++++L +Y            L+ M+  G+ P   TY+ ++
Sbjct: 378 -VPGILERMERNGCRMNSDCYNLILKLYMDWGYELKLRSTLDEMERNGMGPDQRTYTIMI 436

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAET------YNCFFKEYRGRKDANGA 168
             L   GR++DA     +M   G+ P   T       N   KE     +  GA
Sbjct: 437 HGLYDKGRMDDALSYFKQMTLMGMVPEPRTTLLVNAMNIKLKEREAEPEGKGA 489


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 140/285 (49%), Gaps = 11/285 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  ++ G  K NR+D A + +  M  + + P++ TY  LL+G      L  S R E+  
Sbjct: 705 VYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDG------LGKSGRLEE-- 756

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F +M   G EPDV +++ ++ V  +  +   +L     M +K   P V TYSS+
Sbjct: 757 --AFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSL 814

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L   GR+E+A       +  G  P+   Y+     +  +   + A++L+ +M+    
Sbjct: 815 IDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQ- 873

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN+ +YN L+       R+++  ++  +++  G  PDL +Y +LI G+ +     EA 
Sbjct: 874 CPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAE 933

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
            YF  M EKG++P  +TF +L   L + D L     L   ++EE 
Sbjct: 934 SYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEG 978



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 135/283 (47%), Gaps = 15/283 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+  +     +D A + L  M +    P VVTY  L++G+ +   L           
Sbjct: 531 YNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLD---------- 580

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  EM  +G EP V ++S ++  + +  Q + SL   + M  KG    V+TYS V+
Sbjct: 581 EAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVI 640

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLC    ++ A ++ G M   G+ P    Y          +  + A++++ +++E  L 
Sbjct: 641 NCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSL- 699

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+   YNI++   +  NR+D   ++ + +K   + PDL +YT L+ GL +  + +EA  
Sbjct: 700 VPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFN 759

Query: 242 YFVEMIEKGLLPQKVTFETLY----RGLIQSDMLRTWRRLKKK 280
            F +M E+G  P  V + +L     +G   S  L  +R + KK
Sbjct: 760 MFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKK 802



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 11/229 (4%)

Query: 22  LGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81
            G++ +  ++P+  T+ + ++   R   L P          A +   EM   GI+P V +
Sbjct: 275 FGKLGQFRIQPDAQTFRIFVHSFNRSGRLDP----------AAEPIQEMIKSGIDPGVHT 324

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           F++++    ++     +    N MK     P V TY+++V  L   GR+E+A E+  EM 
Sbjct: 325 FTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMK 384

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
            N   P A  YN          +A+ A  L+++MK+ GL VPN+ +YNI+I +     R 
Sbjct: 385 ENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGL-VPNLRTYNIMISVLGKAGRQ 443

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
               ++++D+K  G  PD+ +Y  LI  L +  +  +      EM+EKG
Sbjct: 444 PEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKG 492



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 11/261 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           + TSL+  +   N +  A     +M   G  P+   YN +L  + +    H         
Sbjct: 219 LLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYH--------- 269

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A  VF ++    I+PD  +F I +H ++R+ +   + + +  M + GI P V T++ +
Sbjct: 270 -SAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVL 328

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L   G I++A +    M      P+  TY               A +++ +MKE+  
Sbjct: 329 IDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENN- 387

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P+  +YN LI         DM   ++ ++K  GL P+L +Y ++I  L +  +  EA 
Sbjct: 388 CSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAW 447

Query: 241 QYFVEMIEKGLLPQKVTFETL 261
           Q F ++ E+G +P   T+ TL
Sbjct: 448 QLFHDLKEQGAVPDVFTYNTL 468



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 122/298 (40%), Gaps = 40/298 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI    K   ID A +F   M      PNVVTY  L+NG+ +   L           
Sbjct: 325 FTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLE---------- 374

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +VF EM+     PD  +++ ++    +A +  ++      MK++G+ P + TY+ ++
Sbjct: 375 EACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMI 434

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE-DGL 180
             L   GR  +A +L  ++   G  P   TYN            +  + + ++M E  G 
Sbjct: 435 SVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGE 494

Query: 181 CV----------------------PNMH-------SYNILIGMFMALNRMDMVREIWNDV 211
           C+                      P++        +YN L+  F+    +D   ++   +
Sbjct: 495 CIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVM 554

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           K     P + +YT L+ GL +  +  EA     EM ++G  P  VT+ +L     + D
Sbjct: 555 KKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRD 612



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 18/206 (8%)

Query: 1    MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
            +Y+SLI  + K   +D A     EM  R   PN+VTYN LL+G+ +   L+         
Sbjct: 845  VYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNV-------- 896

Query: 61   RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              AEK+ +EM   G  PD+ +++I++    +      +      MKEKGI P V T++S+
Sbjct: 897  --AEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSL 954

Query: 121  VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
            ++ L    ++ +A EL   M   G  PS  TYN            + A  ++ +MK  G 
Sbjct: 955  IESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKG- 1013

Query: 181  CVPNMHSYNILIGMFMALNRMDMVRE 206
            C+P+     I IG+   + R+  VRE
Sbjct: 1014 CMPD----GITIGI---MKRILSVRE 1032



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 89/181 (49%), Gaps = 1/181 (0%)

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           +L  +   +    +L+  N MK  G  P+   Y+ V++ L   G    A  + G++ +  
Sbjct: 223 LLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFR 282

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           + P A+T+  F   +      + A +  ++M + G+  P +H++ +LI   +    +D  
Sbjct: 283 IQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGID-PGVHTFTVLIDALVKSGNIDEA 341

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            + +N +K     P++ +YT L++GL +  + +EAC+ FVEM E    P  + + TL  G
Sbjct: 342 CKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDG 401

Query: 265 L 265
           L
Sbjct: 402 L 402



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 104/218 (47%), Gaps = 11/218 (5%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y+SLI    K  R++ A  F    I +G  PNV  Y+ L++   ++            + 
Sbjct: 811  YSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKG----------MVD 860

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             A ++F+EM+ R   P++ +++ +L   ++A +  ++   L  M++ G  P + TY+ ++
Sbjct: 861  RALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILI 920

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              +   G +++AE     M   G+ P   T+    +          A +L+  M+E+G  
Sbjct: 921  DGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYN 980

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
             P++ +YN+LI +     ++     I++++K  G  PD
Sbjct: 981  -PSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPD 1017



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 86/217 (39%), Gaps = 39/217 (17%)

Query: 93  HQPQLSLDKLNFM---KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
           +Q  L L K  F    ++ G   TV TY+ ++K L      +   ++L  M + G   S 
Sbjct: 158 NQKDLHLAKCFFTWAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISM 217

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN-------------------- 189
                  + +    + +GA++++ QMK  G C P+ + YN                    
Sbjct: 218 HLLTSLLRTFGSTNNVSGALEIFNQMKSFG-CNPSTNMYNFVLELLVKGGFYHSAVIVFG 276

Query: 190 ---------------ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
                          I +  F    R+D   E   ++  SG+ P + ++T+LI  L +  
Sbjct: 277 KLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSG 336

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              EAC++F  M      P  VT+ TL  GL ++  L
Sbjct: 337 NIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRL 373



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 10/93 (10%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            +TSLI    K++++  A      M E G  P+VVTYNVL++ + R   +H          
Sbjct: 951  FTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVH---------- 1000

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ 94
             A  +F EM+V+G  PD  +  I+  + S   Q
Sbjct: 1001 EAAMIFHEMKVKGCMPDGITIGIMKRILSVREQ 1033


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 132/267 (49%), Gaps = 14/267 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEM--IERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           +I G CK   I+ A R + EM  IE G+ P+V+T+N +L+G+C+          E+ I +
Sbjct: 177 IIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCK----------EQRILD 226

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  VF     RG  P+V ++S ++   S+  +   +L  L  M E G      TYS+VV 
Sbjct: 227 AHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVD 286

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            L   GR+EDA  +L +M   G  P A TYN     +  R+    A+ L R+M E G   
Sbjct: 287 GLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGF-H 345

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ +Y  L        R D   EI + +   G  P+  +Y+ ++ GLC+  +  EA  Y
Sbjct: 346 PSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGY 405

Query: 243 FVEMI-EKGLLPQKVTFETLYRGLIQS 268
           F +M  ++ + P  + +  L  GL ++
Sbjct: 406 FEKMARDEVVAPHVIAYSALIDGLCKA 432



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 131/260 (50%), Gaps = 10/260 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI G  K+ ++D A + L +M+E G   N VTY+ +++G+ +   +           
Sbjct: 246 YSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRME---------- 295

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  V  +MR  G  PD  +++ ++  + +  + + ++  L  M E G  P+V TY+++ 
Sbjct: 296 DAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLC 355

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR ++A E+L  M   G  P+A TY+              A+  + +M  D + 
Sbjct: 356 HGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVV 415

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y+ LI       ++D   E    +  +G  PD+ ++++LI+GLC+  +     +
Sbjct: 416 APHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLE 475

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F  M E+G +P  VT+ TL
Sbjct: 476 LFRGMAERGCVPDMVTYATL 495



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 134/272 (49%), Gaps = 30/272 (11%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +I G CK  ++D A     +M+++ + P+VVTY  L++G+ +          ++ ++ A 
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGK----------QRRVKEAY 50

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMK-EKGICPTVATYSSVVKC 123
            +F+E R +G  P V +++ ++    +  + + +L   + M    G  PTV TYS+++  
Sbjct: 51  DLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDG 110

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC    ++   +LL EM   G  P+A TYN       G+  +  A  L  QM  +G C P
Sbjct: 111 LCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANG-CPP 169

Query: 184 NMHSYNILI----------GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
            + ++ ++I            F  ++ M M+         SGL PD+ ++  ++ GLC++
Sbjct: 170 ELITFGLIIKGLCKEGEIEAAFRVVDEMFMIE--------SGLSPDVITFNSVLDGLCKE 221

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           Q+  +A   F   +E+G  P  VT+ TL  GL
Sbjct: 222 QRILDAHNVFKRALERGCRPNVVTYSTLIDGL 253



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 136/285 (47%), Gaps = 15/285 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++++ G  K+ R++ A   L +M + G  P+ VTYN L++G  +R  L          R
Sbjct: 281 YSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRL----------R 330

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  EM   G  P V +++ + H   R+ +   +++ L++M  +G  P   TYSS+V
Sbjct: 331 EAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIV 390

Query: 122 KCLCSCGRIEDAEELLGEMVRNGV-CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             LC  GR+ +A     +M R+ V  P    Y+            + A +   +M   G 
Sbjct: 391 DGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGR 450

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +P++ +++ILI       R+D   E++  +   G  PD+ +Y  L+  LC   +  EA 
Sbjct: 451 -IPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAF 509

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
             F +M   GL P + T  T+  GL++ +     +R++   DEE+
Sbjct: 510 DLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRIQ---DEEN 551



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 123/269 (45%), Gaps = 14/269 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G  K  R+  A     E   +G  P VVTYN +++G+C+             I 
Sbjct: 33  YGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGR----------IE 82

Query: 62  NAEKVFDEMRVR-GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           NA  ++D+M +  G  P V ++S ++    R H+       L  M  +G  P   TY+++
Sbjct: 83  NALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTL 142

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ--MKED 178
           V  L   GR ++A  LL +M  NG  P   T+    K      +   A ++  +  M E 
Sbjct: 143 VNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIES 202

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           GL  P++ ++N ++       R+     ++      G  P++ +Y+ LI GL +  K  E
Sbjct: 203 GLS-PDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDE 261

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           A Q   +M+E G     VT+ T+  GL++
Sbjct: 262 ALQLLAKMVELGCRANTVTYSTVVDGLLK 290



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 134/285 (47%), Gaps = 14/285 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEM-IERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y ++I G CK  RI+ A     +M I  G  P VVTY+ L++G+CR          +  +
Sbjct: 68  YNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCR----------DHEV 117

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               K+ +EM  RG  P+  +++ +++      + + +   L  M   G  P + T+  +
Sbjct: 118 DKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLI 177

Query: 121 VKCLCSCGRIEDAEELLGEM--VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +K LC  G IE A  ++ EM  + +G+ P   T+N         +    A  ++++  E 
Sbjct: 178 IKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALER 237

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G C PN+ +Y+ LI     + +MD   ++   +   G   +  +Y+ ++ GL +  + ++
Sbjct: 238 G-CRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMED 296

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           A     +M + G LP  VT+ TL  G  +   LR    L +++ E
Sbjct: 297 AVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLE 341


>gi|242054767|ref|XP_002456529.1| hypothetical protein SORBIDRAFT_03g037920 [Sorghum bicolor]
 gi|241928504|gb|EES01649.1| hypothetical protein SORBIDRAFT_03g037920 [Sorghum bicolor]
          Length = 517

 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 133/261 (50%), Gaps = 15/261 (5%)

Query: 2   YTSLIYGWCKIN-RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +  ++ GWC I   +  A+RF   M  +G++ +VV+Y  +++   +  SLH         
Sbjct: 243 FNIVLNGWCNIVCSLREAKRFWSSMERKGIDRDVVSYGSMISCFSKAGSLH--------- 293

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +  K+F+ M   G+ PD   ++ ++   ++    + +   +  M+EK + P  AT++S+
Sbjct: 294 -SVMKLFNHMNEAGVAPDRKVYNAIVFALAKGRCVKAAKMLVRTMEEKQVAPDTATFNSL 352

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   ++++A E+   M+  G+ PS  T++      R   +    +   +Q++    
Sbjct: 353 IGPLCKARQVQEAMEMFDAMLERGLSPSVRTFHALLNVARNSTEVFDLLDKMKQLQ---- 408

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P M +Y +LI  F    + + V ++W+ +  +GL PD  +Y +LIHGL    + +EA 
Sbjct: 409 CEPEMDTYIMLIRKFCRWRQHESVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEEAA 468

Query: 241 QYFVEMIEKGLLPQKVTFETL 261
           +Y+ EM  KG  P+K T E +
Sbjct: 469 KYYGEMKSKGFSPEKKTEEMI 489



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 134/301 (44%), Gaps = 25/301 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+   C+   +  AE  L    E+       ++N++LNG C             ++R
Sbjct: 209 FHGLLSALCRYKNVQDAEHLLIS-CEKEFPFETKSFNIVLNGWCNIVC---------SLR 258

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A++ +  M  +GI+ DV S+  ++  +S+A      +   N M E G+ P    Y+++V
Sbjct: 259 EAKRFWSSMERKGIDRDVVSYGSMISCFSKAGSLHSVMKLFNHMNEAGVAPDRKVYNAIV 318

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L     ++ A+ L+  M    V P   T+N         +    AM+++  M E GL 
Sbjct: 319 FALAKGRCVKAAKMLVRTMEEKQVAPDTATFNSLIGPLCKARQVQEAMEMFDAMLERGLS 378

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +++ L+ +  A N  + V ++ + +K     P++D+Y MLI   C  ++ +   +
Sbjct: 379 -PSVRTFHALLNV--ARNSTE-VFDLLDKMKQLQCEPEMDTYIMLIRKFCRWRQHESVEK 434

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYR 301
            +  M   GL P +  +  L  GL           L  +L+E +  +G E ++  F P +
Sbjct: 435 LWSAMPANGLSPDRSAYIVLIHGLF----------LNGRLEEAAKYYG-EMKSKGFSPEK 483

Query: 302 R 302
           +
Sbjct: 484 K 484



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 13/180 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++++   K   +  A+  +  M E+ V P+  T+N L+  +C+           + +
Sbjct: 313 VYNAIVFALAKGRCVKAAKMLVRTMEEKQVAPDTATFNSLIGPLCK----------ARQV 362

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A ++FD M  RG+ P V +F  +L+V   A       D L+ MK+    P + TY  +
Sbjct: 363 QEAMEMFDAMLERGLSPSVRTFHALLNV---ARNSTEVFDLLDKMKQLQCEPEMDTYIML 419

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C   + E  E+L   M  NG+ P    Y               A K Y +MK  G 
Sbjct: 420 IRKFCRWRQHESVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEEAAKYYGEMKSKGF 479



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 21/170 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + SLI   CK  ++  A      M+ERG+ P+V T++ LLN                  R
Sbjct: 349 FNSLIGPLCKARQVQEAMEMFDAMLERGLSPSVRTFHALLN----------------VAR 392

Query: 62  NAEKVFD---EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKL-NFMKEKGICPTVATY 117
           N+ +VFD   +M+    EP++ ++ +++  + R  Q + S++KL + M   G+ P  + Y
Sbjct: 393 NSTEVFDLLDKMKQLQCEPEMDTYIMLIRKFCRWRQHE-SVEKLWSAMPANGLSPDRSAY 451

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG 167
             ++  L   GR+E+A +  GEM   G  P  +T         GR+ A  
Sbjct: 452 IVLIHGLFLNGRLEEAAKYYGEMKSKGFSPEKKTEEMITAWLEGRELAKA 501



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 68/183 (37%), Gaps = 36/183 (19%)

Query: 114 VATYSSVVKCLCSCGRIEDAEELL-----------------------------------G 138
           VA +  ++  LC    ++DAE LL                                    
Sbjct: 206 VAEFHGLLSALCRYKNVQDAEHLLISCEKEFPFETKSFNIVLNGWCNIVCSLREAKRFWS 265

Query: 139 EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL 198
            M R G+     +Y      +      +  MKL+  M E G+  P+   YN ++      
Sbjct: 266 SMERKGIDRDVVSYGSMISCFSKAGSLHSVMKLFNHMNEAGV-APDRKVYNAIVFALAKG 324

Query: 199 NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
             +   + +   ++   + PD  ++  LI  LC+ ++ +EA + F  M+E+GL P   TF
Sbjct: 325 RCVKAAKMLVRTMEEKQVAPDTATFNSLIGPLCKARQVQEAMEMFDAMLERGLSPSVRTF 384

Query: 259 ETL 261
             L
Sbjct: 385 HAL 387


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 143/281 (50%), Gaps = 12/281 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I G CK  ++D A     +M+++ + P+VVTY  L++G+ +          ++ ++
Sbjct: 208 YTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGK----------QRRVK 257

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFM-KEKGICPTVATYSSV 120
            A  +F+E R +G  P V +++ ++    +  + + +L   + M +E  + P + TYS++
Sbjct: 258 EAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSAL 317

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L    R E A EL  EM+  G  P   TYN            + AM+++R+M    +
Sbjct: 318 INGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNV 377

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN+ +Y +LI  F  ++R+    ++  +++G  L PD  ++T +I  LC++ +  EA 
Sbjct: 378 CDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAH 437

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           + F E I K   P  V F T+  G  +   +   ++L  ++
Sbjct: 438 ELF-ESIGKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRM 477



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 131/264 (49%), Gaps = 14/264 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMI-ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y ++I G CK  RI+ A     +M+ E  ++P++ TY+ L+NG      L+ S R EK  
Sbjct: 278 YNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALING------LNLSNRGEK-- 329

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSS 119
             A ++++EM   G  PDV +++ +L    ++     +++    M    +C P V TY+ 
Sbjct: 330 --AYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTV 387

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++   C   R+ DA +L  EM    + P A T+    ++       + A +L+  + +  
Sbjct: 388 LIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIGK-- 445

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C P+   +N ++  +  + R+D  +++ + +  SG  P L +YT L+ G C   ++ +A
Sbjct: 446 TCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDA 505

Query: 240 CQYFVEMIEKGLLPQKVTFETLYR 263
              + EMIE G  P++   E + R
Sbjct: 506 LIMYHEMIEMGFPPERHLAELVDR 529



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 126/267 (47%), Gaps = 16/267 (5%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +L+  + K  R++ A  F    ++   EP+ V+YN L+NG  +             ++ A
Sbjct: 107 NLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGD----------VKKA 156

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGI-CPTVATYSSVVK 122
             +F EM+  GI   + S +IVL       +  ++ +    M   GI  P + +Y+ ++ 
Sbjct: 157 LALFGEMKDSGIAV-LRSHNIVLRGLCSGGKISMAWEVFKDM--SGIFSPNLISYTIMID 213

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC   +++ A  L  +MV   + P   TY         ++    A  L+ + +  G C 
Sbjct: 214 GLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG-CH 272

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWND-VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           P + +YN +I       R++    +++D V+   L PD+ +Y+ LI+GL    + ++A +
Sbjct: 273 PTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYE 332

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            + EM++ G  P  VT+ TL  GL +S
Sbjct: 333 LYEEMLDTGCSPDVVTYNTLLDGLCKS 359



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 99/210 (47%), Gaps = 10/210 (4%)

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFM-KEKGICPTVATYSSVVKCLCSCGRIED 132
           G+  D+    +V  V  R   P  + +   +  K+        T ++++       R+ED
Sbjct: 61  GLYGDILVPDLVGKVIHRIPDPNTAWEVFQWAGKQSKFTHNRFTCNNLLSVYVKARRVED 120

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A       ++N   P   +YN     +    D   A+ L+ +MK+ G+ V  + S+NI++
Sbjct: 121 AHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAV--LRSHNIVL 178

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
               +  ++ M  E++ D+ G    P+L SYT++I GLC+ +K  +A   F +M++K + 
Sbjct: 179 RGLCSGGKISMAWEVFKDMSGI-FSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIY 237

Query: 253 PQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           P  VT+  L  GL +       RR+K+  D
Sbjct: 238 PDVVTYGALIDGLGKQ------RRVKEAYD 261



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 29/46 (63%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR 46
           ++ +++ G+CKI RID A++    M++ G  P + TY  L+ G CR
Sbjct: 453 LFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCR 498


>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
 gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
           Japonica Group]
 gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
          Length = 551

 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 138/267 (51%), Gaps = 15/267 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CKI +++ AE  + +M  RGV  N + +N +++G CR+            + 
Sbjct: 286 YGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRK----------NMVD 335

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++   M   GIE DV +++ +     RA++   + + L  M EKG+ P   +Y++++
Sbjct: 336 KALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLI 395

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C+ G + +A  L  EM  NG  PS  TYN     Y  +     A +   +M++ GL 
Sbjct: 396 SIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGL- 454

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+++SY  L+       ++D+   ++ ++K  G  P+L +YT LI GL ++ + +EA Q
Sbjct: 455 VPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQ 514

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            +  M+  GL P     + LY  L+ S
Sbjct: 515 LYDNMLGDGLTPD----DALYSALVGS 537



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 134/286 (46%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+  + +    D     L  M   G+EP V TY +L++G+             + I 
Sbjct: 181 YNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSA----------ARDIT 230

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             E VF+EM+ + +  DV  +S V++ Y RA   + + +  +     GI P   TY +++
Sbjct: 231 KVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALI 290

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++E AE L+ +M   GV  +   +N     Y  +   + A+++   M++ G+ 
Sbjct: 291 NGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIE 350

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++++YN L       NRMD  + +   +   G+ P+  SYT LI   C +    EA +
Sbjct: 351 L-DVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARR 409

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            F EM   G  P  VT+  +  G I+   +R   R K +++++ + 
Sbjct: 410 LFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLV 455



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 10/165 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI   C    +  A R   EM   G EP++VTYNV+++G  ++ S+  +ERF+    
Sbjct: 391 YTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFK---- 446

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 +EM  +G+ PD+ S++ ++H +    +  ++L     MK++G  P +  Y++++
Sbjct: 447 ------NEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALI 500

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
             L   GR E+A +L   M+ +G+ P    Y+         K  N
Sbjct: 501 SGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKKQN 545



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 4/158 (2%)

Query: 111 CP---TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG 167
           CP   T  + S VV   C  GR+  A +LL EM R+GV  +A  YN     Y   KD + 
Sbjct: 137 CPDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDR 196

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
             ++ + M+ +G+  P + +Y IL+    A   +  V  ++ ++K   L  D+  Y+ +I
Sbjct: 197 VAEMLKVMENEGI-EPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVI 255

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +  C     + A + F E +  G+ P + T+  L  G 
Sbjct: 256 NAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGF 293


>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
          Length = 475

 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 138/267 (51%), Gaps = 15/267 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CKI +++ AE  + +M  RGV  N + +N +++G CR+            + 
Sbjct: 210 YGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRK----------NMVD 259

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++   M   GIE DV +++ +     RA++   + + L  M EKG+ P   +Y++++
Sbjct: 260 KALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLI 319

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C+ G + +A  L  EM  NG  PS  TYN     Y  +     A +   +M++ GL 
Sbjct: 320 SIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGL- 378

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+++SY  L+       ++D+   ++ ++K  G  P+L +YT LI GL ++ + +EA Q
Sbjct: 379 VPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQ 438

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            +  M+  GL P     + LY  L+ S
Sbjct: 439 LYDNMLGDGLTPD----DALYSALVGS 461



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 134/286 (46%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+  + +    D     L  M   G+EP V TY +L++G+             + I 
Sbjct: 105 YNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSA----------ARDIT 154

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             E VF+EM+ + +  DV  +S V++ Y RA   + + +  +     GI P   TY +++
Sbjct: 155 KVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALI 214

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++E AE L+ +M   GV  +   +N     Y  +   + A+++   M++ G+ 
Sbjct: 215 NGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIE 274

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++++YN L       NRMD  + +   +   G+ P+  SYT LI   C +    EA +
Sbjct: 275 L-DVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARR 333

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            F EM   G  P  VT+  +  G I+   +R   R K +++++ + 
Sbjct: 334 LFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLV 379



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 10/165 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI   C    +  A R   EM   G EP++VTYNV+++G  ++ S+  +ERF+    
Sbjct: 315 YTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFK---- 370

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 +EM  +G+ PD+ S++ ++H +    +  ++L     MK++G  P +  Y++++
Sbjct: 371 ------NEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALI 424

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
             L   GR E+A +L   M+ +G+ P    Y+         K  N
Sbjct: 425 SGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKKQN 469



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 4/158 (2%)

Query: 111 CP---TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG 167
           CP   T  + S VV   C  GR+  A +LL EM R+GV  +A  YN     Y   KD + 
Sbjct: 61  CPDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDR 120

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
             ++ + M+ +G+  P + +Y IL+    A   +  V  ++ ++K   L  D+  Y+ +I
Sbjct: 121 VAEMLKVMENEGI-EPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVI 179

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +  C     + A + F E +  G+ P + T+  L  G 
Sbjct: 180 NAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGF 217


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 142/312 (45%), Gaps = 46/312 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G C++  +D+A R   EMI+ G +P+V T+   + G C+  +L P         
Sbjct: 380 YNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNL-PM-------- 430

Query: 62  NAEKVFDEMRVRGIEPD-----------------VTSFSIVLHVYSRAHQPQL------- 97
            A+++FDEM  RG++PD                   +F +   + +R   P L       
Sbjct: 431 -AKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFI 489

Query: 98  -SLDKLNFMKE----------KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
             L KL  +KE           G+ P   TY+S++      G +  A  L  EM+  G+ 
Sbjct: 490 DGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIF 549

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           PS  TY      Y  R     A+  + +M E G+  PN+ +YN LI     + +MD    
Sbjct: 550 PSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVH-PNVITYNALINGLCKVRKMDQAYN 608

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
            + +++  G+ P+  +YT+LI+  C    W+EA + + +M+++ + P   T  +L + L 
Sbjct: 609 FFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLKHLN 668

Query: 267 QSDMLRTWRRLK 278
           +   L   R L+
Sbjct: 669 KDYKLHVVRHLE 680



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 125/259 (48%), Gaps = 11/259 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++  +CK   +  A + L +M   G  PN VTYNVL+NG+      H  E     + 
Sbjct: 205 YNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLS-----HSGE-----ME 254

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++  +M   G+E  V ++  ++  Y    Q + +      M  +G  PTV TY++++
Sbjct: 255 QAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIM 314

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+ DA +LL  MV   + P   +YN     Y    +   A  L+ +++   L 
Sbjct: 315 YGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLA 374

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN LI     L  +D+   + +++   G  PD+ ++T  + G C+      A +
Sbjct: 375 -PSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKE 433

Query: 242 YFVEMIEKGLLPQKVTFET 260
            F EM+ +GL P +  + T
Sbjct: 434 LFDEMLNRGLQPDRFAYIT 452



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 120/253 (47%), Gaps = 11/253 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N ID+A      M+E G+ P VVTYN +L+  C++            ++ A ++  +M+ 
Sbjct: 181 NNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKG----------MVQEALQLLFQMQA 230

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
            G  P+  +++++++  S + + + + + +  M   G+  +V TY  +++  C  G+IE+
Sbjct: 231 MGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEE 290

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A  L  EM+  G  P+  TYN            + A KL   M    L +P++ SYN LI
Sbjct: 291 ASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNL-MPDLVSYNTLI 349

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
             +  L  +     ++ +++   L P + +Y  LI GLC       A +   EMI+ G  
Sbjct: 350 YGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPD 409

Query: 253 PQKVTFETLYRGL 265
           P   TF T  RG 
Sbjct: 410 PDVFTFTTFVRGF 422



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 128/279 (45%), Gaps = 14/279 (5%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           +M+ +G+ P+V   N +L  +  R         +  I  A +V++ M   GI P V +++
Sbjct: 156 KMVSKGLLPDVKNCNRVLRLLRDR---------DNNIDVAREVYNVMVECGICPTVVTYN 206

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            +L  + +    Q +L  L  M+  G  P   TY+ +V  L   G +E A+EL+ +M+R 
Sbjct: 207 TMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRL 266

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+  S  TY+   + Y  +     A +L  +M   G  VP + +YN ++       R+  
Sbjct: 267 GLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRG-AVPTVVTYNTIMYGLCKWGRVSD 325

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            R++ + +    L PDL SY  LI+G        EA   F E+  + L P  VT+ TL  
Sbjct: 326 ARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLID 385

Query: 264 GLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR 302
           GL +   L    RLK    +E I  G +   + F  + R
Sbjct: 386 GLCRLGDLDVAMRLK----DEMIKHGPDPDVFTFTTFVR 420


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 128/263 (48%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G  K  R+D A  FL EM+E G++PN  TY   ++G    +    ++++ K   
Sbjct: 490 YNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVK--- 546

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                  EMR  G+ P+    + +++ Y +  +   +      M ++GI     TY+ ++
Sbjct: 547 -------EMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLM 599

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L    +++DAEE+  EM   G+ P   +Y      +    +   A  ++ +M E+GL 
Sbjct: 600 NGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGL- 658

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+  YN+L+G F     ++  +E+ +++   GL P+  +Y  +I G C+     EA +
Sbjct: 659 TPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFR 718

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F EM  KGL+P    + TL  G
Sbjct: 719 LFDEMKLKGLVPDSFVYTTLVDG 741



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 143/320 (44%), Gaps = 49/320 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G+C+   +      L EM +R +  +  TY  ++ G+C    L           
Sbjct: 385 YASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLD---------- 434

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  EM   G  P+V  ++ ++  + +  +   ++  L  MKE+GI P +  Y+S++
Sbjct: 435 GAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLI 494

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L    R+++A   L EMV NG+ P+A TY  F   Y    +   A K  ++M+E G+ 
Sbjct: 495 IGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGV- 553

Query: 182 VPN-----------------------------------MHSYNILIGMFMALNRMDMVRE 206
           +PN                                     +Y +L+      +++D   E
Sbjct: 554 LPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEE 613

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           I+ +++G G+ PD+ SY +LI+G  +    ++A   F EM+E+GL P  + +  L  G  
Sbjct: 614 IFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFC 673

Query: 267 QSDMLRTWRRLKKKLDEESI 286
           +S  +   + L   LDE S+
Sbjct: 674 RSGEIEKAKEL---LDEMSV 690



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 135/291 (46%), Gaps = 30/291 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  LI G CKI R++ A+  L EM   GV  +  TY++L++G+ +  +   ++       
Sbjct: 280 YDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMV 339

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  +  A+ +FD M   G+ P   +++ ++  Y R    +
Sbjct: 340 SHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVR 399

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
              + L  MK++ I  +  TY +VVK +CS G ++ A  ++ EM+ +G  P+   Y    
Sbjct: 400 QGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLI 459

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           K +        AM++ ++MKE G+  P++  YN LI       RMD  R    ++  +GL
Sbjct: 460 KTFLQNSRFGDAMRVLKEMKEQGIA-PDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGL 518

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            P+  +Y   I G  E  ++  A +Y  EM E G+LP KV    L  GLI 
Sbjct: 519 KPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKV----LCTGLIN 565



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 132/299 (44%), Gaps = 47/299 (15%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T LI  +CK  ++  A      M+++G+  +  TY VL+NG+ +             + +
Sbjct: 561 TGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKN----------DKVDD 610

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           AE++F EMR +GI PDV S+ ++++ +S+    Q +    + M E+G+ P V  Y+ ++ 
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL-- 180
             C  G IE A+ELL EM   G+ P+A TY      Y    D   A +L+ +MK  GL  
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVP 730

Query: 181 -------------------------------CVPNMHSYNILIGMFMALNRMDMVREIWN 209
                                          C  +   +N LI       + ++  E+ N
Sbjct: 731 DSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLN 790

Query: 210 DVKGSGLG----PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            +          P+  +Y ++I  LC++   + A + F +M    L+P  +T+ +L  G
Sbjct: 791 RLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNG 849



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 129/277 (46%), Gaps = 11/277 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+LI  + + +R   A R L EM E+G+ P++  YN L+ G+ +   +  +  F    
Sbjct: 454 IYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSF---- 509

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                   EM   G++P+  ++   +  Y  A +   +   +  M+E G+ P     + +
Sbjct: 510 ------LVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGL 563

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C   ++ +A      MV  G+   A+TY             + A +++R+M+  G+
Sbjct: 564 INEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGI 623

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ SY +LI  F  L  M     I++++   GL P++  Y ML+ G C   + ++A 
Sbjct: 624 A-PDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAK 682

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           +   EM  KGL P  VT+ T+  G  +S  L    RL
Sbjct: 683 ELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRL 719



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 122/272 (44%), Gaps = 14/272 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+ K+  +  A     EM+E G+ PNV+ YN+LL G CR             I 
Sbjct: 630 YGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE----------IE 679

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++ DEM V+G+ P+  ++  ++  Y ++     +    + MK KG+ P    Y+++V
Sbjct: 680 KAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLV 739

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK-EYRGRKDANGAMKLYRQMKE--D 178
              C    +E A  + G   + G   S   +N      ++  K       L R M    D
Sbjct: 740 DGCCRLNDVERAITIFGTN-KKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFD 798

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
               PN  +YNI+I        ++  +E+++ ++ + L P + +YT L++G  +  +  E
Sbjct: 799 RFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAE 858

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
               F E I  G+ P  + +  +    ++  M
Sbjct: 859 MFPVFDEAIAAGIEPDHIMYSVIINAFLKEGM 890



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 125/294 (42%), Gaps = 26/294 (8%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI-------------- 60
           +D A +    MI +G+ P   TY+VL++G+C+   L  ++     +              
Sbjct: 258 VDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSL 317

Query: 61  --------RNAEK---VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG 109
                   RNA+    +  EM   GI      +   + V S+    + +    + M   G
Sbjct: 318 LIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASG 377

Query: 110 ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAM 169
           + P    Y+S+++  C    +    ELL EM +  +  S  TY    K      D +GA 
Sbjct: 378 LIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAY 437

Query: 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
            + ++M   G C PN+  Y  LI  F+  +R      +  ++K  G+ PD+  Y  LI G
Sbjct: 438 NIVKEMIASG-CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIG 496

Query: 230 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           L + ++  EA  + VEM+E GL P   T+     G I++    +  +  K++ E
Sbjct: 497 LSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 113/261 (43%), Gaps = 35/261 (13%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           NR+D+       M+ER V  +V TY++L+   CR  ++   +     +   EK F     
Sbjct: 200 NRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGK---DVLFKTEKEF----- 251

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE----KGICPTVATYSSVVKCLCSCG 128
                                   L++D    +KE    KG+ P   TY  ++  LC   
Sbjct: 252 --------------------RTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIK 291

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV-PNMHS 187
           R+EDA+ LL EM   GV     TY+         ++A+ A  L  +M   G+ + P M  
Sbjct: 292 RLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYM-- 349

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           Y+  I +      M+  + +++ +  SGL P   +Y  LI G C ++  ++  +  VEM 
Sbjct: 350 YDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMK 409

Query: 248 EKGLLPQKVTFETLYRGLIQS 268
           ++ ++    T+ T+ +G+  S
Sbjct: 410 KRNIVISPYTYGTVVKGMCSS 430



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 105/262 (40%), Gaps = 32/262 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           Y ++I G+CK   +  A R   EM  +G+ P+   Y  L++G CR               
Sbjct: 700 YCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNK 759

Query: 47  ---RASLHPSE-------RFEKTIRNAE---KVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93
               +S  P         +F KT    E   ++ D    R  +P+  +++I++    +  
Sbjct: 760 KGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEG 819

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY- 152
             + + +  + M+   + PTV TY+S++      GR  +   +  E +  G+ P    Y 
Sbjct: 820 NLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYS 879

Query: 153 ---NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
              N F KE    K      +++ +   D  C  ++ +   L+  F  +  M++  ++  
Sbjct: 880 VIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVME 939

Query: 210 DVKGSGLGPDLDSYTMLIHGLC 231
           ++      PD  +   LI+  C
Sbjct: 940 NMVRLQYIPDSATVIELINESC 961


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 140/284 (49%), Gaps = 11/284 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI   C   R   A R L +MIER + P+V T++ L++   +          E  + 
Sbjct: 89  YSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK----------EGKLV 138

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK++DEM  R I+P + ++S +++ +    +   +     FM  K   P V TY++++
Sbjct: 139 EAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLI 198

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R+E+  E+  EM + G+  +  TYN   +      D + A +++++M  DG+ 
Sbjct: 199 KGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV- 257

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN L+       +++    ++  ++ S + P + +Y ++I G+C+  K ++   
Sbjct: 258 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 317

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
            F  +  KG+ P  V + T+  G  +         L K++ E+ 
Sbjct: 318 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDG 361



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 128/248 (51%), Gaps = 11/248 (4%)

Query: 21  FLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80
            +  M+ +G +P++VTY V++NG+C+R               A  + ++M    +EP V 
Sbjct: 3   LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL----------AFNLLNKMEQGKLEPGVL 52

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
            ++ ++    +      +L+    M+ KGI P V TYSS++ CLC+ GR  DA  LL +M
Sbjct: 53  IYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM 112

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
           +   + P   T++     +        A KLY +M +  +  P++ +Y+ LI  F   +R
Sbjct: 113 IERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI-DPSIVTYSSLINGFCMHDR 171

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           +D  ++++  +      PD+ +Y  LI G C+ ++ +E  + F EM ++GL+   VT+  
Sbjct: 172 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 231

Query: 261 LYRGLIQS 268
           L +GL Q+
Sbjct: 232 LIQGLFQA 239



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 143/293 (48%), Gaps = 28/293 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-----ERF 56
           Y  ++ G CK    D+A   L +M +  +EP V+ YN +++G+C+   +  +     E  
Sbjct: 19  YGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEME 78

Query: 57  EKTIR--------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            K IR                    +A ++  +M  R I PDV +FS ++  + +  +  
Sbjct: 79  TKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLV 138

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    + M ++ I P++ TYSS++   C   R+++A+++   MV     P   TYN   
Sbjct: 139 EAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLI 198

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSG 215
           K +   K     M+++R+M + GL V N  +YNILI G+F A    DM +EI+ ++   G
Sbjct: 199 KGFCKYKRVEEGMEVFREMSQRGL-VGNTVTYNILIQGLFQA-GDCDMAQEIFKEMVSDG 256

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           + P++ +Y  L+ GLC+  K ++A   F  +    + P   T+  +  G+ ++
Sbjct: 257 VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA 309



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 111/229 (48%), Gaps = 11/229 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK  R++       EM +RG+  N VTYN+L+ G+ +               
Sbjct: 194 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM--------- 244

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++F EM   G+ P++ +++ +L    +  + + ++    +++   + PT+ TY+ ++
Sbjct: 245 -AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMI 303

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + +C  G++ED  +L   +   GV P    YN     +  +     A  L+++MKEDG  
Sbjct: 304 EGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDG-T 362

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           +PN   YN LI   +     +   E+  +++  G   D  +  ++ + L
Sbjct: 363 LPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 411



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 1/173 (0%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M  KG  P + TY  VV  LC  G  + A  LL +M +  + P    YN         K 
Sbjct: 7   MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKH 66

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
            + A+ L+++M+  G+  PN+ +Y+ LI       R      + +D+    + PD+ +++
Sbjct: 67  MDDALNLFKEMETKGI-RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFS 125

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            LI    ++ K  EA + + EM+++ + P  VT+ +L  G    D L   +++
Sbjct: 126 ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 178



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 6/165 (3%)

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           L+  MV  G  P   TY         R D + A  L  +M E G   P +  YN +I   
Sbjct: 3   LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM-EQGKLEPGVLIYNTIIDGL 61

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
                MD    ++ +++  G+ P++ +Y+ LI  LC   +W +A +   +MIE+ + P  
Sbjct: 62  CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 121

Query: 256 VTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
            TF  L    ++   L    +L     K+ +D   +T+ S    +
Sbjct: 122 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGF 166


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 139/299 (46%), Gaps = 46/299 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G C++  +D+A R   EMI+ G +P+V T+ +L+ G C+  +L P         
Sbjct: 368 YNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNL-PM-------- 418

Query: 62  NAEKVFDEMRVRGIEPD-----------------VTSFSIVLHVYSRAHQPQL------- 97
            A+++FDEM  RG++PD                   +F +   + +R   P L       
Sbjct: 419 -AKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFI 477

Query: 98  -SLDKLNFMKE----------KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
             L KL  +KE           G+ P   TY+S++      G +  A  +  EM+  G+ 
Sbjct: 478 DGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIF 537

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           PS  TY      Y  R     A+  + +M E G+  PN+ +YN LI     + +MD   +
Sbjct: 538 PSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVH-PNVITYNALINGLCKVRKMDQAYK 596

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            + +++  G+ P+  +YT+LI+  C    W+EA + + +M+++ + P   T   L + L
Sbjct: 597 FFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHSALLKHL 655



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 137/285 (48%), Gaps = 26/285 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           Y +LIYG+ ++  I  A     E+  RG+ P+VVTYN L++G+CR   L  + R      
Sbjct: 333 YNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMI 392

Query: 56  ----------FEKTIRN---------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                     F   +R          A+++FDEM  RG++PD  ++   +    +   P 
Sbjct: 393 KHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPS 452

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      M  +G  P + TY+  +  L   G +++A EL+ +M+ NG+ P   TY    
Sbjct: 453 KAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSII 512

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +        A  ++ +M   G+  P++ +Y +LI  +    R+ +    + ++   G+
Sbjct: 513 HAHLMAGHLRKARAVFLEMLSKGI-FPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGV 571

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            P++ +Y  LI+GLC+ +K  +A ++F EM  KG+ P K T+  L
Sbjct: 572 HPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTIL 616



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 134/274 (48%), Gaps = 11/274 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C+  ++D A R   EM+ RG  P +VTYN ++ G+C+             + 
Sbjct: 263 YDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGR----------VS 312

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+ D M  + + PD+ S++ +++ Y+R      +      ++ +G+ P+V TY++++
Sbjct: 313 DARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLI 372

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G ++ A  L  EM+++G  P   T+    + +    +   A +L+ +M   GL 
Sbjct: 373 DGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQ 432

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y   I   + L        +  ++   G  PDL +Y + I GL +    KEA +
Sbjct: 433 -PDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASE 491

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
              +M+  GL+P  VT+ ++    + +  LR  R
Sbjct: 492 LVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKAR 525



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 129/259 (49%), Gaps = 11/259 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++  +CK  ++  A + L +M + G  PN VTYNVL+NG+      H  E     + 
Sbjct: 193 YNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLS-----HSGE-----LE 242

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++  EM   G+E    ++  ++  Y    Q   +      M  +G  PT+ TY++++
Sbjct: 243 QAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIM 302

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+ DA +LL  MV   + P   +YN     Y    +   A  L+ +++  GL 
Sbjct: 303 YGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGL- 361

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++ +YN LI     +  +D+   + +++   G  PD+ ++T+L+ G C+      A +
Sbjct: 362 VPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKE 421

Query: 242 YFVEMIEKGLLPQKVTFET 260
            F EM+ +GL P +  + T
Sbjct: 422 LFDEMLNRGLQPDRFAYIT 440



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 132/270 (48%), Gaps = 15/270 (5%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           +M+ +G+ P++   N +L  +  R S         +I  A +V++ M   GI P V +++
Sbjct: 144 KMVSKGMLPDLKNCNRVLRLLRDRDS---------SIDVAREVYNVMVECGIRPTVVTYN 194

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            +L  + +  + Q +L  L  M++ G  P   TY+ +V  L   G +E A+EL+ EM+R 
Sbjct: 195 TMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRL 254

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+  SA TY+   + Y  +   + A +L  +M   G  VP + +YN ++       R+  
Sbjct: 255 GLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRG-AVPTLVTYNTIMYGLCKWGRVSD 313

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            R++ + +    L PDL SY  LI+G        EA   F E+  +GL+P  VT+ TL  
Sbjct: 314 ARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLID 373

Query: 264 GLIQSDMLRTWRRLKKKL-----DEESITF 288
           GL +   L    RLK ++     D +  TF
Sbjct: 374 GLCRMGDLDVAMRLKDEMIKHGPDPDVFTF 403


>gi|242050034|ref|XP_002462761.1| hypothetical protein SORBIDRAFT_02g031520 [Sorghum bicolor]
 gi|241926138|gb|EER99282.1| hypothetical protein SORBIDRAFT_02g031520 [Sorghum bicolor]
          Length = 535

 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 129/258 (50%), Gaps = 14/258 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT++++ WC+  ++D AER   EM + G+ PNV TY  +++ + R             +
Sbjct: 242 LYTAVVHAWCRAGQLDEAERVFAEMQQSGIMPNVYTYTAVIDAMYRAGQ----------V 291

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++  +M   G  P+  +F+ ++  + +A + +  L   N M +    P + TY+ +
Sbjct: 292 PRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMHQLRCEPDIITYNFL 351

Query: 121 VKCLCSCGR--IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           ++  C  G+  ++ A ++L +M+     P   T+N  F+      +   A KLY +M+E 
Sbjct: 352 IETHCGKGQGNLDAALKVLDKMIAKKCVPDCHTFNPMFRLLVVLGNIGAAHKLYEKMREL 411

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
             C PN+ +YN L+ +F     MDMV  +  ++   G+ P++ +Y  LI   C +  WK 
Sbjct: 412 Q-CKPNVVTYNCLLKLFNKEKSMDMVLRMKKNMDVEGIEPNMHTYAALIEAFCGRGNWKR 470

Query: 239 ACQYFVEMI-EKGLLPQK 255
           A     EMI EK   P K
Sbjct: 471 AHATLKEMIEEKSFKPSK 488



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 135/318 (42%), Gaps = 38/318 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--RASLHPSE---- 54
           +Y S+I    K +   +A   L EM ER V    ++  ++   + R  RA + PSE    
Sbjct: 137 LYASMIDLLAKHHHFSLARHLLDEMRERAVP---ISSRLIFALIRRYVRAEM-PSEAADL 192

Query: 55  --RFE----------------------KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
             R E                      +    A+ +FD  R     PDV  ++ V+H + 
Sbjct: 193 FRRMEEYGSGAPEPATLASLLAALSKKRLASEAQALFDSCRTV-FTPDVVLYTAVVHAWC 251

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
           RA Q   +      M++ GI P V TY++V+  +   G++  A+ELL +M+ +G  P+  
Sbjct: 252 RAGQLDEAERVFAEMQQSGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTA 311

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR--MDMVREIW 208
           T+N   + +     +   ++++ QM +   C P++ +YN LI       +  +D   ++ 
Sbjct: 312 TFNAIMRAHVKAGRSEQVLQVHNQMHQLR-CEPDIITYNFLIETHCGKGQGNLDAALKVL 370

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           + +      PD  ++  +   L        A + + +M E    P  VT+  L +   + 
Sbjct: 371 DKMIAKKCVPDCHTFNPMFRLLVVLGNIGAAHKLYEKMRELQCKPNVVTYNCLLKLFNKE 430

Query: 269 DMLRTWRRLKKKLDEESI 286
             +    R+KK +D E I
Sbjct: 431 KSMDMVLRMKKNMDVEGI 448



 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 21/139 (15%)

Query: 12  INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMR 71
           +  I  A +   +M E   +PNVVTYN LL    +  S+    R +K           M 
Sbjct: 395 LGNIGAAHKLYEKMRELQCKPNVVTYNCLLKLFNKEKSMDMVLRMKKN----------MD 444

Query: 72  VRGIEPDVTSFSIVLHVY------SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           V GIEP++ +++ ++  +       RAH    +L ++  ++EK   P+      V+  L 
Sbjct: 445 VEGIEPNMHTYAALIEAFCGRGNWKRAHA---TLKEM--IEEKSFKPSKQVRDMVLVLLR 499

Query: 126 SCGRIEDAEELLGEMVRNG 144
             G+++  EEL+  MV  G
Sbjct: 500 KAGQLKKHEELVELMVDRG 518


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 138/277 (49%), Gaps = 12/277 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI G C + ++  A RF  EM + G+   +VTYN L+ G+C+   L          
Sbjct: 419 IYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKL---------- 468

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + AE++F  +   G  PDV +++ ++  YS A   Q  L+    MK+ G+ PT+ T+  +
Sbjct: 469 KEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPL 528

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   CS   I+  E L  EM++  + P    YN     Y+       A  L ++M + G+
Sbjct: 529 ISG-CSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGV 587

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  +YN LI   +   ++   +++ +D+K  GL P+ D+Y++LI G C+ + +  A 
Sbjct: 588 -RPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAY 646

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            ++ EM+E G LP       L  GL +   L+  + +
Sbjct: 647 VWYREMLENGFLPNVCICNELSTGLRKDGRLQEAQSI 683



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 141/303 (46%), Gaps = 12/303 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y   +    K+  + +A      M  R V PNV  YNVL+ G+C+          EK I
Sbjct: 68  VYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCK----------EKRI 117

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R+AEK+F EM VR + P+  +F+ ++  Y +A +  +++     MK++ + P++ T++S+
Sbjct: 118 RDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSL 177

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG-AMKLYRQMKEDG 179
           +  LC   RIE+A  +L E+  NG  P   TY+  F       D  G A+ LYR+    G
Sbjct: 178 LSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKG 237

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           + + N ++ +IL+       +++   E+   +   GL P    Y  +++G C+      A
Sbjct: 238 VKIDN-YTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRA 296

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
                +M  +GL P  + F ++     +  M+       KK+  + I    E  N     
Sbjct: 297 ILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDG 356

Query: 300 YRR 302
           Y R
Sbjct: 357 YGR 359



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 144/301 (47%), Gaps = 27/301 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV--------CRRASLHPS 53
           + S+I  +C++  ID AE ++ +M+ +G+ P+V TYN+L++G         C +      
Sbjct: 315 FNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEME 374

Query: 54  ERFEK-----------------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           E  EK                  I  AE V  +M  RG+ P+   +++++       + +
Sbjct: 375 ENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLR 434

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   + M + GI  T+ TY+S++K LC  G++++AEE+   +   G CP   TYN   
Sbjct: 435 EALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLI 494

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y    ++   ++LY  MK+ GL  P +++++ LI    +   + +   ++N++    L
Sbjct: 495 SGYSNAGNSQKCLELYETMKKLGL-KPTINTFHPLIS-GCSKEGIKLKETLFNEMLQMNL 552

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD   Y  +IH   E    ++A     EM++ G+ P   T+ +L  G ++   L   + 
Sbjct: 553 SPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKD 612

Query: 277 L 277
           L
Sbjct: 613 L 613



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 136/297 (45%), Gaps = 27/297 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR------------RAS 49
           + SL+ G CK  RI+ A   L E+   G  P+  TY+++ +G+ +            R +
Sbjct: 174 FNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREA 233

Query: 50  LHPSERF--------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           +    +               E  +  AE+V   +   G+ P    ++ +++ Y +    
Sbjct: 234 IGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDM 293

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             ++  +  M+ +G+ P    ++SV+   C    I+ AEE + +MV  G+ PS ETYN  
Sbjct: 294 DRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNIL 353

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y      +   ++  +M+E+G   PN+ SY  LI       ++     +  D+ G G
Sbjct: 354 IDGYGRLCVFSRCFQILEEMEENGE-KPNVISYGSLINCLCKDGKILEAEMVLRDMVGRG 412

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
           + P+ + Y MLI G C   K +EA ++F EM + G+    VT+ +L +GL +   L+
Sbjct: 413 VLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLK 469



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 147/356 (41%), Gaps = 62/356 (17%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS----ERF 56
           +Y  LI G CK  RI  AE+  GEM  R + PN VT+N L++G C+   +  +    ER 
Sbjct: 103 VYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERM 162

Query: 57  EKT---------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ- 94
           +K                      I  A  + +E++  G  PD  ++SI+     ++   
Sbjct: 163 KKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDG 222

Query: 95  PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
              +LD       KG+     T S ++  LC  G++E AEE+L  +V +G+ P    YN 
Sbjct: 223 AGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNT 282

Query: 155 FFKEYRGRKDANGAMKLYRQMKEDGL---CV----------------------------- 182
               Y    D + A+    QM+  GL   C+                             
Sbjct: 283 IVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKG 342

Query: 183 --PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +YNILI  +  L       +I  +++ +G  P++ SY  LI+ LC+  K  EA 
Sbjct: 343 IAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAE 402

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYH 296
               +M+ +G+LP    +  L  G      LR   R   ++ +  I  G+    Y+
Sbjct: 403 MVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGI--GATIVTYN 456



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 42/262 (16%)

Query: 49  SLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK 108
           SL  S++F+    N   +F EM   G  PD   +   +    +    +L+++    MK +
Sbjct: 40  SLVESKKFD----NVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRR 95

Query: 109 GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGA 168
            + P V  Y+ ++  LC   RI DAE+L GEM    + P+  T+N     Y    + + A
Sbjct: 96  KVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVA 155

Query: 169 MKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD--------- 219
           + L  +MK++ +  P++ ++N L+       R++  R + N++K +G  PD         
Sbjct: 156 IGLRERMKKEKV-EPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFD 214

Query: 220 -------------------------LDSYT--MLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                                    +D+YT  +L++GLC++ K ++A +    ++E GL+
Sbjct: 215 GLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLV 274

Query: 253 PQKVTFETLYRGLIQ-SDMLRT 273
           P +V + T+  G  Q  DM R 
Sbjct: 275 PGEVIYNTIVNGYCQIGDMDRA 296



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 26/245 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------------- 48
           Y SLI G CK+ ++  AE     +   G  P+V+TYN L++G                  
Sbjct: 455 YNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMK 514

Query: 49  ---------SLHP--SERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
                    + HP  S   ++ I+  E +F+EM    + PD   ++ ++H Y      Q 
Sbjct: 515 KLGLKPTINTFHPLISGCSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQK 574

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           +      M + G+ P   TY+S++      G++ + ++L+ +M   G+ P A+TY+   +
Sbjct: 575 AFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQ 634

Query: 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
            +   KD NGA   YR+M E+G  +PN+   N L        R+   + I +++  +G+ 
Sbjct: 635 GHCDLKDFNGAYVWYREMLENGF-LPNVCICNELSTGLRKDGRLQEAQSICSEMIANGM- 692

Query: 218 PDLDS 222
            +LD+
Sbjct: 693 DNLDT 697


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 127/267 (47%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+CK+NRI+ A + L  M  RG  P++VTYN+++  +C R  L           
Sbjct: 140 YNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGL--------- 190

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KV D++ +    P V +++I++           ++  L  M  +G+ P + TY++++
Sbjct: 191 -ALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAII 249

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + +C  G +E A EL+  +   G  P   +YN   + +  +   +   KL  +M   G C
Sbjct: 250 RGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRG-C 308

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +Y+ILI       R+D    +   +    L PD  SY  LI  LC++ +   A  
Sbjct: 309 EPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIG 368

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
               MI  G LP  V + T+   L ++
Sbjct: 369 IMDYMISNGCLPDIVNYNTILAALCKN 395



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 142/299 (47%), Gaps = 46/299 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK   ++ A   +  +  +G +P+V++YN+LL     RA L+  +  E    
Sbjct: 245 YNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILL-----RAFLNQGKWDE---- 295

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             EK+  EM  RG EP+  ++SI++    R  +   ++  L  M EK + P   +Y  ++
Sbjct: 296 -GEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLI 354

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR++ A  ++  M+ NG  P    YN          +AN A++++ +++  G C
Sbjct: 355 SALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMG-C 413

Query: 182 VPNMHSYNILI-------------GMFMA-------------------LNRMDMVRE--- 206
            PN+ SYN +I             GM  A                   L R  +V E   
Sbjct: 414 PPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIG 473

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           + +D++ SG  P + SY +++ GLC+ ++  +A   F EMIEKG  P + T+  L  G+
Sbjct: 474 LLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGI 532



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 125/263 (47%), Gaps = 12/263 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T LI G+     I+ A R + E++E   EP+V  YN +++G C+             I  
Sbjct: 107 TKLIKGFFNFKNIEKASRVM-EILESHTEPDVFAYNAVISGFCKV----------NRIEA 155

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A +V + M+ RG  PD+ +++I++       +  L+L  L+ +      PTV TY+ +++
Sbjct: 156 ATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIE 215

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
                G I +A +LL EM+  G+ P   TYN   +          A +L   +   G C 
Sbjct: 216 ATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKG-CK 274

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ SYNIL+  F+   + D   ++  ++   G  P+  +Y++LI  LC   +  EA   
Sbjct: 275 PDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISV 334

Query: 243 FVEMIEKGLLPQKVTFETLYRGL 265
              MIEK L P   +++ L   L
Sbjct: 335 LKVMIEKELTPDTYSYDPLISAL 357



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 120/256 (46%), Gaps = 12/256 (4%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           CK  + + +  FL  ++ +G  P+V+    L+ G              K I  A +V  E
Sbjct: 79  CKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNF----------KNIEKASRVM-E 127

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           +     EPDV +++ V+  + + ++ + +   LN MK +G  P + TY+ ++  LC+  +
Sbjct: 128 ILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRK 187

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           +  A ++L +++ +   P+  TY    +        N AMKL  +M   GL +P+M++YN
Sbjct: 188 LGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGL-LPDMYTYN 246

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            +I        ++   E+   +   G  PD+ SY +L+     + KW E  +   EM  +
Sbjct: 247 AIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSR 306

Query: 250 GLLPQKVTFETLYRGL 265
           G  P KVT+  L   L
Sbjct: 307 GCEPNKVTYSILISSL 322


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++   CK  +  +A   L +M ER ++ + V Y+++++G+C+  SL           
Sbjct: 329 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLD---------- 378

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA  +F+EM ++GI  ++ +++I++  +  A +       L  M ++ I P V T+S ++
Sbjct: 379 NAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLI 438

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G++ +AEEL  EM+  G+ P   TY      +      + A ++   M   G C
Sbjct: 439 DSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG-C 497

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ ++NILI  +   NR+D   E++  +   G+  D  +Y  LI G CE  K   A +
Sbjct: 498 DPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKE 557

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F EM+ + + P  VT++ L  GL
Sbjct: 558 LFQEMVSRKVPPNIVTYKILLDGL 581



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 137/283 (48%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C   R D   + L +MI+R + PNVVT++VL++   +          E  +R
Sbjct: 399 YNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK----------EGKLR 448

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE++  EM  RGI PD  +++ ++  + + +    +   ++ M  KG  P + T++ ++
Sbjct: 449 EAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILI 508

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI+D  EL  +M   GV     TYN   + +      N A +L+++M    + 
Sbjct: 509 NGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKV- 567

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y IL+         +   EI+  ++ S +  D+  Y ++IHG+C   K  +A  
Sbjct: 568 PPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWD 627

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KG+ P   T+  +  GL +   L     L +K++E+
Sbjct: 628 LFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEED 670



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 151/303 (49%), Gaps = 24/303 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++LI G C   R+  A   +  M+E G +P+++T N L+NG+C               +
Sbjct: 259 FSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSG------------K 306

Query: 62  NAEKVF--DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
            AE +   D+M   G +P+  ++  VL+V  ++ Q  L+++ L  M+E+ I      YS 
Sbjct: 307 EAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSI 366

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKE 177
           ++  LC  G +++A  L  EM   G+  +  TYN     +   GR D +GA KL R M +
Sbjct: 367 IIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWD-DGA-KLLRDMIK 424

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
             +  PN+ ++++LI  F+   ++    E+  ++   G+ PD  +YT LI G C++    
Sbjct: 425 RKIN-PNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 483

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLK-KKLDEESITFGSEF 292
           +A Q    M+ KG  P   TF  L  G  ++    D L  +R++  + +  +++T+ +  
Sbjct: 484 KANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 543

Query: 293 QNY 295
           Q +
Sbjct: 544 QGF 546



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 10/181 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+C++ ++++A+    EM+ R V PN+VTY +LL+G+C       SE+      
Sbjct: 539 YNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGE---SEK------ 589

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F+++    +E D+  ++I++H    A +   + D    +  KG+ P V TY+ ++
Sbjct: 590 -ALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMI 648

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G + +AE L  +M  +G  P   TYN   + + G  DA  ++KL  ++K  G  
Sbjct: 649 GGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFS 708

Query: 182 V 182
           V
Sbjct: 709 V 709



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 129/287 (44%), Gaps = 13/287 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR-RASLHPSERFEKTI 60
           ++ L     K  + D+      +M  +G+  N+ T ++++N  CR R          K I
Sbjct: 189 FSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKII 248

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           +            G EP+  +FS +++      +   +L+ ++ M E G  P + T +++
Sbjct: 249 K-----------LGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTL 297

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  LC  G+  +A  L+ +MV  G  P+A TY               AM+L R+M+E  +
Sbjct: 298 VNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNI 357

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +  +  Y+I+I        +D    ++N+++  G+  ++ +Y +LI G C   +W +  
Sbjct: 358 KLDAV-KYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGA 416

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +   +MI++ + P  VTF  L    ++   LR    L K++    I 
Sbjct: 417 KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIA 463



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 10/124 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  +I+G C  +++D A      +  +GV+P V TYN+++ G+C++  L          
Sbjct: 608 IYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLS--------- 658

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE +F +M   G  PD  +++I++  +        S+  +  +K  G     +T   V
Sbjct: 659 -EAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMV 717

Query: 121 VKCL 124
           +  L
Sbjct: 718 IDML 721


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 146/301 (48%), Gaps = 20/301 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++LI G+C   R+  A   +  M+E    PNVVT N L+NG+C +            + 
Sbjct: 142 FSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGR----------VT 191

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D M   G E +  ++  VL+   ++    L+LD    M+E+ I  +V  YS V+
Sbjct: 192 EALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVI 251

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDG 179
             LC  G ++DA  L  EM   G+      Y+         GR D +GA K+ R+M    
Sbjct: 252 DSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWD-DGA-KMLREMIGRN 309

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           + +PN+ +++ LI +F+   ++   +E++N++   G+ PD  +Y+ LI G C++ +  EA
Sbjct: 310 I-IPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEA 368

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQN 294
            Q    M+ KG  P  VT+  L     ++  +    RL      K L  +++T+ +  Q 
Sbjct: 369 NQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQG 428

Query: 295 Y 295
           +
Sbjct: 429 F 429



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 134/263 (50%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++LI  + K  ++  A+    EM+ RG+ P+ +TY+ L++G C+          E  + 
Sbjct: 317 FSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCK----------ENRLG 366

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D M  +G EP++ ++SI+++ Y +A +    +     +  KG+     TY+++V
Sbjct: 367 EANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLV 426

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G++  A+EL  EMV  GV PS  TY           +   A++++ +M++  + 
Sbjct: 427 QGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRM- 485

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +  +  YNI+I      +++D    ++  +   G+ PD+ +Y ++I GLC+K    EA  
Sbjct: 486 ILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADM 545

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F +M E G  P   T+  L R 
Sbjct: 546 LFRKMKEDGCAPSDCTYNILIRA 568



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 137/283 (48%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I G C   R D   + L EMI R + PNVVT++ L++   +          E  + 
Sbjct: 282 YSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVK----------EGKLL 331

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++++EM  RGI PD  ++S ++  + + ++   +   L+ M  KG  P + TYS ++
Sbjct: 332 EAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILI 391

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R+++   L  E+   G+     TYN   + +      N A +L+++M   G+ 
Sbjct: 392 NSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGV- 450

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y IL+        +    EI+  ++ S +   +  Y ++IHG+C   K  +A  
Sbjct: 451 PPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWS 510

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KG+ P  +T+  +  GL +   L     L +K+ E+
Sbjct: 511 LFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKED 553



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++   CK     +A     +M ER ++ +VV Y+++++ +C+  +L           
Sbjct: 212 YGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLD---------- 261

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +F+EM ++GI+ DV ++S ++       +       L  M  + I P V T+S+++
Sbjct: 262 DALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALI 321

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G++ +A+EL  EMV  G+ P   TY+     +        A ++   M   G C
Sbjct: 322 DVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKG-C 380

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y+ILI  +    R+D    ++ ++   GL  D  +Y  L+ G C+  K   A +
Sbjct: 381 EPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKE 440

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
            F EM+ +G+ P  VT+  L  GL  +  L+    + +K+ +  +  G    N
Sbjct: 441 LFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYN 493



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 119/251 (47%), Gaps = 26/251 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI G+CK NR+  A + L  M+ +G EPN+VTY++L+N  C+   +    R    I 
Sbjct: 352 YSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEIS 411

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +                         A+++F EM  RG+ P V ++ I+L       + Q
Sbjct: 412 SKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQ 471

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+    M++  +   +  Y+ ++  +C+  +++DA  L   +   GV P   TYN   
Sbjct: 472 KALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMI 531

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                +   + A  L+R+MKEDG C P+  +YNILI   +  + +    E+  ++K  G 
Sbjct: 532 GGLCKKGSLSEADMLFRKMKEDG-CAPSDCTYNILIRAHLGGSGVISSVELIEEMKMRGF 590

Query: 217 GPDLDSYTMLI 227
             D  +  M++
Sbjct: 591 AADASTIKMVV 601



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 134/288 (46%), Gaps = 22/288 (7%)

Query: 16  DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI 75
           D+   F  EM   G+E N+ T N+++N  CR+  L     F  ++      F      G 
Sbjct: 86  DLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLL----FAFSVVGRALKF------GF 135

Query: 76  EPDVTSFSIVLHVY---SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           EP+  +FS +++ +    R  +    +D++  MK +   P V T ++++  LC  GR+ +
Sbjct: 136 EPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYR---PNVVTVNTLINGLCLKGRVTE 192

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A  L+  MV+ G   +  TY           +   A+ L+R+M+E  +   ++  Y+I+I
Sbjct: 193 ALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSI-KASVVQYSIVI 251

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                   +D    ++N+++  G+  D+ +Y+ +I GLC   +W +  +   EMI + ++
Sbjct: 252 DSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNII 311

Query: 253 PQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           P  VTF  L    ++   L   + L      + +  ++IT+ S    +
Sbjct: 312 PNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGF 359



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 11/131 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  +I+G C  +++D A      +  +GV+P+V+TYNV++ G+C++ SL          
Sbjct: 491 IYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSE-------- 542

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+ +F +M+  G  P   +++I++  +        S++ +  MK +G     +T   V
Sbjct: 543 --ADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADASTIKMV 600

Query: 121 VKCLCSCGRIE 131
           V  L S GR++
Sbjct: 601 VVML-SDGRLD 610



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 6/166 (3%)

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           ++ +A +L   M+++   PS   ++  F     RK+ +  +   ++M  +G+   NM++ 
Sbjct: 49  KVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGI-EHNMYTM 107

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           NI+I  F    ++     +       G  P+  +++ LI+G C + +  EA      M+E
Sbjct: 108 NIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVE 167

Query: 249 KGLLPQKVTFETLYRGL-----IQSDMLRTWRRLKKKLDEESITFG 289
               P  VT  TL  GL     +   ++   R +K   +   IT+G
Sbjct: 168 MKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYG 213


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 136/267 (50%), Gaps = 13/267 (4%)

Query: 21  FLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80
           F  E++E G  P V  YN+L+N  C+          E +IR+A+ +F+E+R RG+ P   
Sbjct: 210 FYSEILEYGFPPKVQYYNILINKFCK----------EGSIRDAKLIFNEIRKRGLRPTTV 259

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           SF+ +++   ++            M+E  I P V TYS ++  LC  GR++ AE+L  EM
Sbjct: 260 SFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEM 319

Query: 141 VRNGVCPSAETYNCFFK-EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
            + G+ P+  T+      +YR R+  + AM  Y QM   G+  P++  YN L+     + 
Sbjct: 320 QQRGLRPNGITFTALIDGQYRSRR-MDSAMNTYHQMLTMGV-KPDLVMYNTLLNGLCKVG 377

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
            ++  R++ +++K  G+ PD  +YT LI G C++   + A +    M E+G++   V F 
Sbjct: 378 DVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFT 437

Query: 260 TLYRGLIQSDMLRTWRRLKKKLDEESI 286
            L  G  +   +R   R  +++ E  +
Sbjct: 438 ALISGFCRDGRVRDAERTLREMVEAGM 464



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 144/311 (46%), Gaps = 26/311 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI  +CK   I  A+    E+ +RG+ P  V++N L+NG+C+  +L    R +KT+ 
Sbjct: 226 YNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTME 285

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     AE++FDEM+ RG+ P+  +F+ ++    R+ +  
Sbjct: 286 ENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMD 345

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +++  + M   G+ P +  Y++++  LC  G +  A +L+ EM   G+ P   TY    
Sbjct: 346 SAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLI 405

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y    D   AM++ + M E+G+ + N+ ++  LI  F    R+        ++  +G+
Sbjct: 406 DGYCKEGDLESAMEIRKGMNEEGVVLDNV-AFTALISGFCRDGRVRDAERTLREMVEAGM 464

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD  +YTM+I G C+K   K   +   EM   G  P  +T+  L  GL +   ++    
Sbjct: 465 KPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANM 524

Query: 277 LKKKLDEESIT 287
           L + +    +T
Sbjct: 525 LLEAMLNLGVT 535



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 128/260 (49%), Gaps = 14/260 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G  +  R+D A     +M+  GV+P++V YN LLNG+C+             + 
Sbjct: 331 FTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGD----------VN 380

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ DEM++ G++PD  +++ ++  Y +    + +++    M E+G+      +++++
Sbjct: 381 KARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALI 440

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR+ DAE  L EMV  G+ P   TY      Y  + +     KL ++M+ +G  
Sbjct: 441 SGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQING-H 499

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +YN+L+       +M     +   +   G+ PD  +Y +L+ G C+  K ++  +
Sbjct: 500 KPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLLK 559

Query: 242 YFVEMIEKGLLPQKVTFETL 261
                 EKGL+     + +L
Sbjct: 560 L---RNEKGLIVDYAYYTSL 576



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 28/207 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT- 59
           MY +L+ G CK+  ++ A + + EM   G++P+ +TY  L++G C+   L  +    K  
Sbjct: 365 MYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGM 424

Query: 60  ------------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                   +R+AE+   EM   G++PD  ++++V+  Y +    
Sbjct: 425 NEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNV 484

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           ++    L  M+  G  P V TY+ ++  LC  G++++A  LL  M+  GV P   TYN  
Sbjct: 485 KMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNIL 544

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCV 182
            + +     A   +KL     E GL V
Sbjct: 545 LEGHCKNGKAEDLLKL---RNEKGLIV 568



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%)

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           A++ +R ++     +P  H    L+   +  N    +   ++++   G  P +  Y +LI
Sbjct: 172 AIQCFRLVRNSNFQIP-FHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILI 230

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +  C++   ++A   F E+ ++GL P  V+F TL  GL +S  L    RLKK ++E  I
Sbjct: 231 NKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRI 289


>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 128/260 (49%), Gaps = 10/260 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI  + +  + + +   L  M    V PN++TYN ++N  C R  L     +E  + 
Sbjct: 186 YTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINA-CARGDLD----WEGLL- 239

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F EMR  G++PD+ +++ +L   +       +      M E GI P + TYS +V
Sbjct: 240 ---GLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIV 296

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +     G++E    LL EM   G  P   +YN   + +        AM +++QM+  G C
Sbjct: 297 ETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAG-C 355

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN  +Y+IL+ ++    R D VRE++  +K S   PD  +Y +LI    E   +KE   
Sbjct: 356 VPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVT 415

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F +++++ + P   T+E L
Sbjct: 416 LFHDLVDENIDPNMETYEGL 435



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 115/234 (49%), Gaps = 16/234 (6%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           +PN   Y ++++ + R          E  +    ++FDEM  +G+   V S++ +++ Y 
Sbjct: 145 KPNEHIYTIIISLLGR----------EGLLEKCSEIFDEMASQGVIRSVFSYTALINAYG 194

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLG---EMVRNGVCP 147
           R  Q + SL+ L  MK + + P + TY++V+   C+ G + D E LLG   EM   GV P
Sbjct: 195 RNGQYETSLELLERMKRERVSPNILTYNTVINA-CARGDL-DWEGLLGLFAEMRHEGVQP 252

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
              TYN        R   + A  +++ M E G+ VP + +Y+ ++  F  L +++ V  +
Sbjct: 253 DLVTYNTLLSACAARGLGDEAEMVFKTMIEGGI-VPEITTYSYIVETFGKLGKLEKVAML 311

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
             +++  G  PD+ SY +LI    +    KEA   F +M   G +P   T+  L
Sbjct: 312 LKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSIL 365



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 15/248 (6%)

Query: 21  FLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80
              EM   GV+P++VTYN LL+    R               AE VF  M   GI P++T
Sbjct: 241 LFAEMRHEGVQPDLVTYNTLLSACAARG----------LGDEAEMVFKTMIEGGIVPEIT 290

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           ++S ++  + +  + +     L  M+ +G  P +++Y+ +++     G I++A ++  +M
Sbjct: 291 TYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQM 350

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
              G  P+A TY+     Y      +   +L+ QMKE     P+  +YNILI +F     
Sbjct: 351 QAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESS-AEPDATTYNILIRVFGEGGY 409

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
              V  +++D+    + P++++Y  L+    +    ++A +    M  KG++P       
Sbjct: 410 FKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSS----K 465

Query: 261 LYRGLIQS 268
            Y GLI++
Sbjct: 466 AYSGLIEA 473



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 126/274 (45%), Gaps = 16/274 (5%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           ++++  ++PN+ TY  L+   C +  LH          +A+K+   M  +GI P   ++S
Sbjct: 419 DLVDENIDPNMETYEGLVFA-CGKGGLH---------EDAKKILFHMNGKGIVPSSKAYS 468

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            ++  Y +A     +L   N M E G   T+ TY+S++      G  ++ E +L  M   
Sbjct: 469 GLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREY 528

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+  +A++++   + YR       A+K + +M E   C  +  +   ++G++     +D 
Sbjct: 529 GISRNAKSFSGIIEGYRQSGQYEEAIKAFVEM-EKMRCELDEQTLEGVLGVYCFAGLVDE 587

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            +E + ++K SG+ P +  Y M++    +  +W +A +   EMI+  +         + +
Sbjct: 588 SKEQFIEIKASGILPSVLCYCMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIK 647

Query: 264 GLIQSDMLRTWRRLK---KKLDEESITFGSEFQN 294
           G    D    W+ ++    KL+ E   FG  F N
Sbjct: 648 GDYDDD--SNWQMVEYVFDKLNAEGCGFGMRFYN 679



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 112/245 (45%), Gaps = 11/245 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI    K+  I  A     +M   G  PN  TY++LLN   +        R++    
Sbjct: 327 YNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHG------RYD---- 376

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++F +M+    EPD T+++I++ V+      +  +   + + ++ I P + TY  +V
Sbjct: 377 DVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLV 436

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G  EDA+++L  M   G+ PS++ Y+   + Y      + A+  +  M E G  
Sbjct: 437 FACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVG-S 495

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              + +YN LI  F           I + ++  G+  +  S++ +I G  +  +++EA +
Sbjct: 496 KSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIK 555

Query: 242 YFVEM 246
            FVEM
Sbjct: 556 AFVEM 560



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 9/211 (4%)

Query: 79  VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSVVKCLCSCGRIEDAEELL 137
           +  FS+V   ++     Q SL    +M+ +  C P    Y+ ++  L   G +E   E+ 
Sbjct: 112 LNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIF 171

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            EM   GV  S  +Y      Y        +++L  +MK + +  PN+ +YN +I    A
Sbjct: 172 DEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVS-PNILTYNTVIN---A 227

Query: 198 LNRMDMVRE----IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
             R D+  E    ++ +++  G+ PDL +Y  L+     +    EA   F  MIE G++P
Sbjct: 228 CARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVP 287

Query: 254 QKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
           +  T+  +     +   L     L K+++ E
Sbjct: 288 EITTYSYIVETFGKLGKLEKVAMLLKEMESE 318



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 97/237 (40%), Gaps = 12/237 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+ + +       E  L  M E G+  N  +++ ++ G         S ++E+ I 
Sbjct: 502 YNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEG------YRQSGQYEEAI- 554

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K F EM     E D  +   VL VY  A     S ++   +K  GI P+V  Y  ++
Sbjct: 555 ---KAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMML 611

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK-EYRGRKDANGAMKLYRQMKEDGL 180
                 GR +DA ELL EM++  V    +      K +Y    +      ++ ++  +G 
Sbjct: 612 AVYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDKLNAEG- 670

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
           C   M  YN L+     L +      +  +    GL P+L   + L+  +   + W+
Sbjct: 671 CGFGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRQSKLVWSVDVHRMWE 727



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 60/123 (48%)

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
           S   ++  FKE+  R D   +++L++ M+    C PN H Y I+I +      ++   EI
Sbjct: 111 SLNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEI 170

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           ++++   G+   + SYT LI+      +++ + +    M  + + P  +T+ T+     +
Sbjct: 171 FDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACAR 230

Query: 268 SDM 270
            D+
Sbjct: 231 GDL 233



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/253 (20%), Positives = 100/253 (39%), Gaps = 10/253 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI  + +    D A      M E G +  + TYN L++   R              +
Sbjct: 467 YSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGG----------LYK 516

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             E +   MR  GI  +  SFS ++  Y ++ Q + ++     M++        T   V+
Sbjct: 517 EFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVL 576

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +++++E   E+  +G+ PS   Y      Y      + A +L  +M +  + 
Sbjct: 577 GVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAVYAKNGRWDDASELLDEMIKTRVS 636

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +     ++ G +   +   MV  +++ +   G G  +  Y  L+  L    +   A +
Sbjct: 637 SIHQVIGQMIKGDYDDDSNWQMVEYVFDKLNAEGCGFGMRFYNTLLEALWWLGQKGRAAR 696

Query: 242 YFVEMIEKGLLPQ 254
              E  ++GL P+
Sbjct: 697 VLTEATKRGLFPE 709


>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 128/260 (49%), Gaps = 10/260 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI  + +  + + +   L  M    V PN++TYN ++N  C R  L     +E  + 
Sbjct: 186 YTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINA-CARGDLD----WEGLL- 239

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F EMR  G++PD+ +++ +L   +       +      M E GI P + TYS +V
Sbjct: 240 ---GLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIV 296

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +     G++E    LL EM   G  P   +YN   + +        AM +++QM+  G C
Sbjct: 297 ETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAG-C 355

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN  +Y+IL+ ++    R D VRE++  +K S   PD  +Y +LI    E   +KE   
Sbjct: 356 VPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVT 415

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F +++++ + P   T+E L
Sbjct: 416 LFHDLVDENIDPNMETYEGL 435



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 115/234 (49%), Gaps = 16/234 (6%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           +PN   Y ++++ + R          E  +    ++FDEM  +G+   V S++ +++ Y 
Sbjct: 145 KPNEHIYTIIISLLGR----------EGLLEKCSEIFDEMASQGVIRSVFSYTALINAYG 194

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLG---EMVRNGVCP 147
           R  Q + SL+ L  MK + + P + TY++V+   C+ G + D E LLG   EM   GV P
Sbjct: 195 RNGQYETSLELLERMKRERVSPNILTYNTVINA-CARGDL-DWEGLLGLFAEMRHEGVQP 252

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
              TYN        R   + A  +++ M E G+ VP + +Y+ ++  F  L +++ V  +
Sbjct: 253 DLVTYNTLLSACAARGLGDEAEMVFKTMIEGGI-VPEITTYSYIVETFGKLGKLEKVAML 311

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
             +++  G  PD+ SY +LI    +    KEA   F +M   G +P   T+  L
Sbjct: 312 LKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSIL 365



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 15/248 (6%)

Query: 21  FLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80
              EM   GV+P++VTYN LL+    R               AE VF  M   GI P++T
Sbjct: 241 LFAEMRHEGVQPDLVTYNTLLSACAARG----------LGDEAEMVFKTMIEGGIVPEIT 290

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           ++S ++  + +  + +     L  M+ +G  P +++Y+ +++     G I++A ++  +M
Sbjct: 291 TYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQM 350

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
              G  P+A TY+     Y      +   +L+ QMKE     P+  +YNILI +F     
Sbjct: 351 QAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESS-AEPDATTYNILIRVFGEGGY 409

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
              V  +++D+    + P++++Y  L+    +    ++A +    M  KG++P       
Sbjct: 410 FKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSS----K 465

Query: 261 LYRGLIQS 268
            Y GLI++
Sbjct: 466 AYSGLIEA 473



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 126/274 (45%), Gaps = 16/274 (5%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           ++++  ++PN+ TY  L+   C +  LH          +A+K+   M  +GI P   ++S
Sbjct: 419 DLVDENIDPNMETYEGLVFA-CGKGGLH---------EDAKKILFHMNGKGIVPSSKAYS 468

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            ++  Y +A     +L   N M E G   T+ TY+S++      G  ++ E +L  M   
Sbjct: 469 GLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREY 528

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+  +A++++   + YR       A+K + +M E   C  +  +   ++G++     +D 
Sbjct: 529 GISRNAKSFSGIIEGYRQSGQYEEAIKAFVEM-EKMRCELDEQTLEGVLGVYCFAGLVDE 587

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            +E + ++K SG+ P +  Y M++    +  +W +A +   EMI+  +         + +
Sbjct: 588 SKEQFIEIKASGILPSVLCYCMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIK 647

Query: 264 GLIQSDMLRTWRRLK---KKLDEESITFGSEFQN 294
           G    D    W+ ++    KL+ E   FG  F N
Sbjct: 648 GDYDDD--SNWQMVEYVFDKLNAEGCGFGMRFYN 679



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 112/245 (45%), Gaps = 11/245 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI    K+  I  A     +M   G  PN  TY++LLN   +        R++    
Sbjct: 327 YNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHG------RYD---- 376

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++F +M+    EPD T+++I++ V+      +  +   + + ++ I P + TY  +V
Sbjct: 377 DVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLV 436

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G  EDA+++L  M   G+ PS++ Y+   + Y      + A+  +  M E G  
Sbjct: 437 FACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVG-S 495

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              + +YN LI  F           I + ++  G+  +  S++ +I G  +  +++EA +
Sbjct: 496 KSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIK 555

Query: 242 YFVEM 246
            FVEM
Sbjct: 556 AFVEM 560



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 9/211 (4%)

Query: 79  VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSVVKCLCSCGRIEDAEELL 137
           +  FS+V   ++     Q SL    +M+ +  C P    Y+ ++  L   G +E   E+ 
Sbjct: 112 LNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIF 171

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            EM   GV  S  +Y      Y        +++L  +MK + +  PN+ +YN +I    A
Sbjct: 172 DEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVS-PNILTYNTVIN---A 227

Query: 198 LNRMDMVRE----IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
             R D+  E    ++ +++  G+ PDL +Y  L+     +    EA   F  MIE G++P
Sbjct: 228 CARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVP 287

Query: 254 QKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
           +  T+  +     +   L     L K+++ E
Sbjct: 288 EITTYSYIVETFGKLGKLEKVAMLLKEMESE 318



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 97/237 (40%), Gaps = 12/237 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+ + +       E  L  M E G+  N  +++ ++ G         S ++E+ I 
Sbjct: 502 YNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEG------YRQSGQYEEAI- 554

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K F EM     E D  +   VL VY  A     S ++   +K  GI P+V  Y  ++
Sbjct: 555 ---KAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMML 611

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK-EYRGRKDANGAMKLYRQMKEDGL 180
                 GR +DA ELL EM++  V    +      K +Y    +      ++ ++  +G 
Sbjct: 612 AVYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDKLNAEG- 670

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
           C   M  YN L+     L +      +  +    GL P+L   + L+  +   + W+
Sbjct: 671 CGFGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRQSKLVWSVDVHRMWE 727



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 60/123 (48%)

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
           S   ++  FKE+  R D   +++L++ M+    C PN H Y I+I +      ++   EI
Sbjct: 111 SLNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEI 170

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           ++++   G+   + SYT LI+      +++ + +    M  + + P  +T+ T+     +
Sbjct: 171 FDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACAR 230

Query: 268 SDM 270
            D+
Sbjct: 231 GDL 233



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/253 (20%), Positives = 100/253 (39%), Gaps = 10/253 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI  + +    D A      M E G +  + TYN L++   R              +
Sbjct: 467 YSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGG----------LYK 516

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             E +   MR  GI  +  SFS ++  Y ++ Q + ++     M++        T   V+
Sbjct: 517 EFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVL 576

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +++++E   E+  +G+ PS   Y      Y      + A +L  +M +  + 
Sbjct: 577 GVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAVYAKNGRWDDASELLDEMIKTRVS 636

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +     ++ G +   +   MV  +++ +   G G  +  Y  L+  L    +   A +
Sbjct: 637 SIHQVIGQMIKGDYDDDSNWQMVEYVFDKLNAEGCGFGMRFYNTLLEALWWLGQKGRAAR 696

Query: 242 YFVEMIEKGLLPQ 254
              E  ++GL P+
Sbjct: 697 VLTEATKRGLFPE 709


>gi|115444031|ref|NP_001045795.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|41052573|dbj|BAD07755.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535326|dbj|BAF07709.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|125537962|gb|EAY84357.1| hypothetical protein OsI_05732 [Oryza sativa Indica Group]
 gi|125580699|gb|EAZ21630.1| hypothetical protein OsJ_05259 [Oryza sativa Japonica Group]
          Length = 871

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 143/299 (47%), Gaps = 34/299 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSL++ +C       A R L EM ++G  PN  TYNVLL       SL  + R    I 
Sbjct: 394 YTSLLHAYCSEGNAAAANRILDEMAQKGCAPNSFTYNVLLQ------SLWKAGR----IT 443

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG------------ 109
            AE++ + M  +G   D  S +I++    R ++  +++D ++ M  +G            
Sbjct: 444 EAERLLERMSEKGYSLDTASCNIIIDGLCRNNKLDMAMDIVDGMWNEGSLALGRLGYSFL 503

Query: 110 -----------ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158
                        P   TYS++V  LC  GR ++A++ L EM+   + P +  Y+ F   
Sbjct: 504 SLLTDSSSSKRCLPDRITYSTLVSALCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHG 563

Query: 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218
           Y      + A+K+ R M++ G C P+  +YN+LI  F   +  D + ++ +++KG G+ P
Sbjct: 564 YCKHGKTSLAVKVLRDMEKKG-CKPSTRTYNLLIWGFREKHNSDEILKLISEMKGKGICP 622

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           ++ +Y  LI   CE+    +A     EM++  ++P   +FE L +   ++      +R+
Sbjct: 623 NVMTYNSLIKSFCERGMVNKAMPLLDEMLQNEIVPNITSFELLIKAFCKTSDFSAAQRV 681



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 133/292 (45%), Gaps = 50/292 (17%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
            +++ G+C+  ++D AER +  M + G+ PNVVT+N  ++ +C+             + +
Sbjct: 216 NTVVAGFCREGQVDEAERLVERMRDEGLAPNVVTFNARISALCKAGR----------VLD 265

Query: 63  AEKVFDEMR---VRGI-EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           A ++F++M+    RG+  PD  +F ++L  +  A     +   ++ M+  G    V +Y+
Sbjct: 266 AYRIFNDMQEKWERGLPRPDQVTFDVMLSGFCEAGMVDEARVLVDIMRCGGFLRRVESYN 325

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
             +  L   G + +A+ELL EM   GV P++ TYN                        D
Sbjct: 326 RWLSGLVRNGMVGEAQELLREMAHEGVQPNSYTYNIIV---------------------D 364

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           GLC     +++              VR++ + VK   + PD+ +YT L+H  C +     
Sbjct: 365 GLCKEG-KAFD--------------VRKVEDFVKSGVMTPDVVTYTSLLHAYCSEGNAAA 409

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
           A +   EM +KG  P   T+  L + L ++  +    RL +++ E+  +  +
Sbjct: 410 ANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEAERLLERMSEKGYSLDT 461



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 116/286 (40%), Gaps = 32/286 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y   + G  +   +  A+  L EM   GV+PN  TYN++++G+C+          E    
Sbjct: 324 YNRWLSGLVRNGMVGEAQELLREMAHEGVQPNSYTYNIIVDGLCK----------EGKAF 373

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  KV D ++   + PDV +++ +LH Y        +   L+ M +KG  P   TY+ ++
Sbjct: 374 DVRKVEDFVKSGVMTPDVVTYTSLLHAYCSEGNAAAANRILDEMAQKGCAPNSFTYNVLL 433

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
           + L   GRI +AE LL  M   G      + N            + AM +   M  +G  
Sbjct: 434 QSLWKAGRITEAERLLERMSEKGYSLDTASCNIIIDGLCRNNKLDMAMDIVDGMWNEGSL 493

Query: 181 ---------------------CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
                                C+P+  +Y+ L+       R D  ++   ++ G  + PD
Sbjct: 494 ALGRLGYSFLSLLTDSSSSKRCLPDRITYSTLVSALCKEGRFDEAKKKLLEMIGKDISPD 553

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
              Y   IHG C+  K   A +   +M +KG  P   T+  L  G 
Sbjct: 554 SVLYDTFIHGYCKHGKTSLAVKVLRDMEKKGCKPSTRTYNLLIWGF 599



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 14/173 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--RASLHPSERFEKT 59
           Y++L+   CK  R D A++ L EMI + + P+ V Y+  ++G C+  + SL         
Sbjct: 522 YSTLVSALCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSL--------- 572

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
              A KV  +M  +G +P   ++++++  +   H     L  ++ MK KGICP V TY+S
Sbjct: 573 ---AVKVLRDMEKKGCKPSTRTYNLLIWGFREKHNSDEILKLISEMKGKGICPNVMTYNS 629

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
           ++K  C  G +  A  LL EM++N + P+  ++    K +    D + A +++
Sbjct: 630 LIKSFCERGMVNKAMPLLDEMLQNEIVPNITSFELLIKAFCKTSDFSAAQRVF 682


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 136/265 (51%), Gaps = 12/265 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++T+LI  + +  R+D A   L EM    ++ ++V YNV ++   +   +  S +F    
Sbjct: 232 LFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKF---- 287

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                 F EM+  G+ PD  +++ ++ V  +A++   +++    +++    P    Y+++
Sbjct: 288 ------FHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTM 341

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +    S G+ ++A  LL      G  PS   YNC       ++    A++++ +MK D  
Sbjct: 342 IMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDA- 400

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VPN+ +YNILI M     +++   EI +D++ +GL P++ +  ++I  LC+ QK +EAC
Sbjct: 401 -VPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEAC 459

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
             F  M +K   P  VTF +L  GL
Sbjct: 460 SIFEGMDDKVCTPNAVTFSSLIDGL 484



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 138/296 (46%), Gaps = 21/296 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++    K  R++ A R   EM +R   PNV TYN+L++ +CR   L+          
Sbjct: 373 YNCILTCLGKKRRVEEALRIFEEM-KRDAVPNVPTYNILIDMLCREGKLNA--------- 422

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D+M   G+ P+V + +I++    +A + + +      M +K   P   T+SS++
Sbjct: 423 -ALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLI 481

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR--GRKDANGAMKLYRQMKEDG 179
             L  CGR++DA  L  +M+  G  P A  Y    + +   GRK+     K+Y++M   G
Sbjct: 482 DGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKE--DGHKIYKEMVHTG 539

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C P++   N  +         +  R ++ ++   G  PD  SY++LIHGL +     E 
Sbjct: 540 -CSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANET 598

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES-----ITFGS 290
            + F  M E+G +     +  +  G  +S  +    +L +++  +      +T+GS
Sbjct: 599 YELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGS 654



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 122/268 (45%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI+G  K    +        M E+G   +   YN +++G C+             + 
Sbjct: 582 YSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGK----------VN 631

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ +EM+V+G  P V ++  V+   ++  +   +       K  GI   V  YSS++
Sbjct: 632 KAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLI 691

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 GRI++A  ++ E+++ G+ P+  T+NC        ++ N A+  ++ MK D  C
Sbjct: 692 DGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMK-DLKC 750

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +Y+ILI     + + +     W +++  GL P+  +YT +I GL +     EA  
Sbjct: 751 PPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASG 810

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            F      G +P   ++  +  GL  ++
Sbjct: 811 LFSRFKANGGIPDSASYNAMIEGLSSAN 838



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 128/303 (42%), Gaps = 46/303 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTSLI  + K  R +   +   EM+  G  P++   N  ++ V +              
Sbjct: 511 VYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGE----------T 560

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                +F E+   G  PD  S+SI++H   +A     + +    MKE+G       Y++V
Sbjct: 561 EKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAV 620

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G++  A +LL EM   G  P+  TY             + A  L+ + K +G+
Sbjct: 621 IDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGI 680

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD-------LD------------ 221
            + N+  Y+ LI  F  + R+D    I  ++   GL P+       LD            
Sbjct: 681 KL-NVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEAL 739

Query: 222 ----------------SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
                           +Y++LI+GLC  +K+ +A  ++ EM + GL P  +T+ T+  GL
Sbjct: 740 ICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGL 799

Query: 266 IQS 268
            ++
Sbjct: 800 AKA 802



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 14/206 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+SLI G+ K+ RID A   + E++++G+ PNV T+N LL+ + +           + I
Sbjct: 686 VYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVK----------AEEI 735

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A   F  M+     P+  ++SI+++   R  +   +      M++ G+ P   TY+++
Sbjct: 736 NEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTM 795

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L   G I +A  L      NG  P + +YN   +   G   AN AM  Y   +E  L
Sbjct: 796 ISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIE---GLSSANKAMDAYALFEETRL 852

Query: 181 CVPNMHSYNILIGMFMALNRMDMVRE 206
              N+H+   ++ +  AL++ + + +
Sbjct: 853 KGCNIHTKTCVV-LLDALHKAECLEQ 877



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 119/283 (42%), Gaps = 17/283 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNV-VTYNVLLNGVCRRASLHPSERFEKTI 60
           Y SL+    +    D  ER L EM   G  P+  ++  ++ N V  R            +
Sbjct: 128 YNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSR-----------KL 176

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R A  +   MR     P  ++++I++   S   +P   L   + M+E G    V  ++++
Sbjct: 177 REAFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTL 236

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++     GR++ A  LL EM  N +      YN     +      + + K + +MK  GL
Sbjct: 237 IRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGL 296

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +P+  +Y  +IG+    NR+D   E++  ++ +   P   +Y  +I G     K+ EA 
Sbjct: 297 -MPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAY 355

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLKK 279
                   KG +P  + +  +   L +     + LR +  +K+
Sbjct: 356 GLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKR 398



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 104/238 (43%), Gaps = 11/238 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G  KI+R+D A     E    G++ NVV Y+ L++G  +             I 
Sbjct: 652 YGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGR----------ID 701

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + +E+  +G+ P+V +++ +L    +A +   +L     MK+    P   TYS ++
Sbjct: 702 EAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILI 761

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   +   A     EM + G+ P+  TY           +   A  L+ + K +G  
Sbjct: 762 NGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANG-G 820

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +P+  SYN +I    + N+      ++ + +  G      +  +L+  L + +  ++A
Sbjct: 821 IPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQA 878


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 142/293 (48%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+ K    D A     EM++R + P+VVTY+ ++  +C+           + + 
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCK----------GQAMD 248

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V   M   G+ P+  +++ +LH Y  + QP+ ++  L  M+  G+ P V TY+S++
Sbjct: 249 KAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLM 308

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A ++   M + G+ P   TY    + Y  +        L   M  +G+ 
Sbjct: 309 DYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIH 368

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ H +NILI  +    ++D    +++ ++  GL P++ +Y  +I  LC+     +A  
Sbjct: 369 -PDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAML 427

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           YF +MI++GL P  + + +L   L   D       L  ++ +  I   + F N
Sbjct: 428 YFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFN 480



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 134/292 (45%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           Y SL+   CK  R   A +    M +RG+EP++ TY  LL G   + +L           
Sbjct: 304 YNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMV 363

Query: 51  ----HPSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
               HP              ++ +  A  VF +MR  G+ P+V ++  V+ +  ++    
Sbjct: 364 RNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVD 423

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++     M ++G+ P +  Y+S++  LC   + + AEEL+ EM+  G+C +   +N   
Sbjct: 424 DAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSII 483

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +        + KL+  M   G+  PN+ +Y+ LI  +    +MD   ++ + +   G+
Sbjct: 484 HSHCKEGRVIESEKLFDLMVRIGV-KPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGM 542

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            PD  +Y  LI+G C   +  +A   F EM+  G+ P  +T+  + +GL  +
Sbjct: 543 KPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHT 594



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 150/323 (46%), Gaps = 46/323 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTSLI+  C  ++ D AE  + EM++RG+  N + +N +++  C+          E  +
Sbjct: 443 VYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCK----------EGRV 492

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             +EK+FD M   G++P+V ++S ++  Y  A +   +   L+ M   G+ P   TY+++
Sbjct: 493 IESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTL 552

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG- 179
           +   C   R++DA  L  EMV +GV P+  TYN   +     +    A +LY  + + G 
Sbjct: 553 INGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGT 612

Query: 180 -----------------------------LCVPNMH----SYNILIGMFMALNRMDMVRE 206
                                        LC+ ++     ++NI+IG  + + R D  ++
Sbjct: 613 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKD 672

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++  +  +GL PD+ +Y+++   L E+   +E    F+ M E G         ++ R L+
Sbjct: 673 LFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLL 732

Query: 267 Q-SDMLRTWRRLKKKLDEESITF 288
           Q  D+ R    L   +DE+  + 
Sbjct: 733 QRGDITRAGTYL-SMIDEKHFSL 754



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 134/292 (45%), Gaps = 26/292 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKT 59
           ++  LI  + K  ++D A     +M + G+ PNVVTY  ++  +C+  S+  +   FE+ 
Sbjct: 373 VFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQM 432

Query: 60  I------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           I                          AE++  EM  RGI  +   F+ ++H + +  + 
Sbjct: 433 IDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRV 492

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             S    + M   G+ P V TYS+++   C  G++++A +LL  M   G+ P   TYN  
Sbjct: 493 IESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTL 552

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y      + A+ L+++M   G+  PN+ +YNI++       R    +E++  +  SG
Sbjct: 553 INGYCRVSRMDDALALFKEMVSSGVS-PNIITYNIILQGLFHTRRTAAAKELYVGITKSG 611

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +L +Y +++HGLC+     EA + F  +    L  +  TF  +   L++
Sbjct: 612 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 663



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 134/299 (44%), Gaps = 20/299 (6%)

Query: 2   YTSLIYGWCKINRI-DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +T L+ G C   R  D  +  L  M E    P+V +  +LL G+C         R ++ +
Sbjct: 125 FTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLC------DENRSQEAL 178

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                + D+ R  G  PDV S++ V++ + +      +    + M ++ I P V TYSS+
Sbjct: 179 ELLHMMADD-RGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSI 237

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC    ++ A E+L  MV+NGV P+  TYN     Y   +    A+   ++M+ DG+
Sbjct: 238 IAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGV 297

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ +YN L+       R    R+I++ +   GL PD+ +Y  L+ G   K    E  
Sbjct: 298 -EPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMH 356

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
                M+  G+ P    F  L     +          ++K+DE  + F S+ + +   P
Sbjct: 357 ALLDLMVRNGIHPDHHVFNILICAYAK----------QEKVDEAMLVF-SKMRQHGLNP 404



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 108/266 (40%), Gaps = 42/266 (15%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG---ICPTVATYS 118
           +A  VF+E+  RG    +   +  L   +R H P  ++ + N M   G   + PTV TY 
Sbjct: 33  DARHVFEELLRRGRGASIYGLNRALADVAR-HSPAAAVSRYNRMARAGAGKVTPTVHTYG 91

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL-YRQMKE 177
            ++ C C  GR++     LG +V+ G    A T+    K     K  + AM +  R+M E
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 178 --------------DGLC-----------------------VPNMHSYNILIGMFMALNR 200
                          GLC                        P++ SY  +I  F     
Sbjct: 152 LSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGD 211

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
            D     ++++    + PD+ +Y+ +I  LC+ Q   +A +    M++ G++P  +T+ +
Sbjct: 212 SDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNS 271

Query: 261 LYRGLIQSDMLRTWRRLKKKLDEESI 286
           +  G   S+  +      KK+  + +
Sbjct: 272 ILHGYCSSEQPKEAIGFLKKMRSDGV 297


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 139/282 (49%), Gaps = 15/282 (5%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIE-RGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           ++I  + K +  D A      M E  G +P + +YN LLN      +L  S ++++    
Sbjct: 83  TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLN------ALIESNKWDE---- 132

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           AE  F      G+ P++ +++I++ +  R  Q   + + LN+M E+G  P V +Y +++ 
Sbjct: 133 AESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLIN 192

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            L   G + DA +L  EM   GV P    YN     +  + D   A +++ ++ +     
Sbjct: 193 SLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVY 252

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN+ SYN++I       + D   EIW+ +K +  G DL +Y+ LIHGLC       A + 
Sbjct: 253 PNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRV 312

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKKK 280
           + EM E G+ P  V + T+  G +++    + L  W+ ++K+
Sbjct: 313 YKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKE 354



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 134/296 (45%), Gaps = 28/296 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y SL+    + N+ D AE F       G+ PN+ TYN+L+   CR+     ++       
Sbjct: 117 YNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMW 176

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH-VYSRAHQP 95
                                  + +A K+FDEM  RG+ PDV  ++I++   + +    
Sbjct: 177 EQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDIL 236

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             S      +K   + P + +Y+ ++  LC CG+ +++ E+   M +N       TY+  
Sbjct: 237 NASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTL 296

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                G  + +GA ++Y++M E+G+  P++  YN ++  ++   R++   E+W  ++  G
Sbjct: 297 IHGLCGSGNLDGATRVYKEMAENGVS-PDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG 355

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
               + SY +LI GL E  K  EA   +  + EK      +T+  L  GL ++  L
Sbjct: 356 C-RTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYL 410



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 133/341 (39%), Gaps = 63/341 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI+G C    +D A R   EM E GV P+VV YN +LNG  R   +       K + 
Sbjct: 293 YSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVME 352

Query: 62  NA------------------EKVFDEMRVRGIEP------DVTSFSIVLH---------- 87
                                KV + + +  + P      D  ++ +++H          
Sbjct: 353 KEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNK 412

Query: 88  ---VYSRAHQPQLSLDK----------------------LNFMKEKGICPTVATYSSVVK 122
              +   A   +  LD                       L+ M + G  P     ++V+ 
Sbjct: 413 ALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVIN 472

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
                 ++EDA    G MV  G  P+  TYN         +  + A  L ++M   G   
Sbjct: 473 GFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGW-K 531

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PNM +Y++L+       ++DM   +W      G  PD+  + ++IHGLC   K ++A Q 
Sbjct: 532 PNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQL 591

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           + EM ++  +P  VT  TL  G  +   +R + R  K  D 
Sbjct: 592 YSEMKQRKCVPNLVTHNTLMEGFYK---VRDFERASKIWDH 629



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 112/242 (46%), Gaps = 3/242 (1%)

Query: 63  AEKVFDEMR-VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           A  +F  M  + G +P + S++ +L+    +++   +     + +  G+ P + TY+ ++
Sbjct: 97  ALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILI 156

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   + + A+ELL  M   G  P   +Y             + A+KL+ +M E G+ 
Sbjct: 157 KISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGV- 215

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDV-KGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            P++  YNILI  F     +    EIW  + KG  + P++ SY ++I+GLC+  K+ E+ 
Sbjct: 216 TPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESF 275

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
           + +  M +        T+ TL  GL  S  L    R+ K++ E  ++      N     Y
Sbjct: 276 EIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGY 335

Query: 301 RR 302
            R
Sbjct: 336 LR 337



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 99/210 (47%), Gaps = 11/210 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I G C+  R+D     L +M + G +PN    N ++NG  R + L  + RF     
Sbjct: 432 YSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRF----- 486

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                F  M  +G  P V +++ +++  S+A +   +   +  M  KG  P + TYS ++
Sbjct: 487 -----FGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLM 541

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   +++ A  L  + +  G  P  + +N              A++LY +MK+   C
Sbjct: 542 NGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRK-C 600

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           VPN+ ++N L+  F  +   +   +IW+ +
Sbjct: 601 VPNLVTHNTLMEGFYKVRDFERASKIWDHI 630



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 81/158 (51%), Gaps = 15/158 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G  K  R   A   + EM+ +G +PN++TY++L+NG+C+           K + 
Sbjct: 502 YNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQG----------KKLD 551

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++ +   +G +PDV   +I++H    + + + +L   + MK++   P + T+++++
Sbjct: 552 MALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLM 611

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           +        E A ++   +++     S  + NC++ E+
Sbjct: 612 EGFYKVRDFERASKIWDHILQ-----SWSSSNCYYMEH 644



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 1/150 (0%)

Query: 139 EMVRNGVCPSAETYN-CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
           E++R   C   E       K Y      + A+ ++++M E   C P + SYN L+   + 
Sbjct: 67  ELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIE 126

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
            N+ D     +   +  GL P+L +Y +LI   C K+++ +A +    M E+G  P   +
Sbjct: 127 SNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFS 186

Query: 258 FETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           + TL   L ++  +    +L  ++ E  +T
Sbjct: 187 YGTLINSLAKNGYMSDALKLFDEMPERGVT 216


>gi|449468277|ref|XP_004151848.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g14770, mitochondrial-like, partial [Cucumis
           sativus]
          Length = 697

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 137/267 (51%), Gaps = 12/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI G CK+  I+ AE  L EM E+   PNV+TY+ L+NG  ++  LH          
Sbjct: 132 YSALIDGRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLH---------- 181

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A KV  +M  +   P++ +++I+L    +A    ++LD  + MK+ G+   V    + V
Sbjct: 182 DAFKVLRKMVHKNAMPNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAFV 241

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +   GR+E+AEEL+ +M   G+ P    Y      +      + A+ L ++M    + 
Sbjct: 242 NNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTSKNV- 300

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V ++ ++N+LI     L + D    I++ ++  GL PDL +Y  +++G  +K  W  A +
Sbjct: 301 VFDIVTFNVLINCLFKLGKSD-TESIYSAMREMGLSPDLATYNTMLNGNFKKGNWTSALE 359

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            + EM  + L+P  +T   +  GL ++
Sbjct: 360 LWNEMKSRKLIPNAITCNIMINGLCEA 386



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 136/290 (46%), Gaps = 38/290 (13%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLN--GVCRRAS--LHPSE------ 54
           +I G C+  R++ A   L EM+  G+ P   TY +LLN     RRA   L   E      
Sbjct: 379 MINGLCEAGRMENAIDILKEMVLMGLYPTSTTYRILLNISSKSRRADTILQTHELLVNMQ 438

Query: 55  -RFEKTI--------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
            + +K +              R A  V  +M  RGI  D T+++ ++H Y  +   + + 
Sbjct: 439 LKVDKDVYNILISNLCKLGMTRKATAVLKDMEERGIIADTTTYNALIHGYCISSHLKRAF 498

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
              + M  + + P + TY+ ++  L   G I +A++LL E+ + G+ P+A TY      +
Sbjct: 499 MTYSTMLSERVSPDIETYNLLLGGLSKAGLIHEADDLLSEIKKRGLVPNACTYETLMCGH 558

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
              ++    +++Y +M   G  +P   +YN+LIG F  + +M   +E+ N+++  G+ P 
Sbjct: 559 CKVRNTKECLRIYCEMVIKGF-IPKPRAYNMLIGYFSKMGKMKQAKELMNEMQTKGVSPT 617

Query: 220 LDSYTMLIHGLCEKQKW------------KEACQYFVEMIEKGLLPQKVT 257
             +Y +LI G C   K              EA + F+EM ++G +P + T
Sbjct: 618 CTTYDILICGWCNLLKMPDLGSTLKISYRAEAKRLFIEMNDRGFVPCEST 667



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 127/271 (46%), Gaps = 12/271 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G+ K  ++  A     EM  + V  ++VT+NVL+N +           F+    
Sbjct: 272 YTNLMDGFLKSGKVSSALNLAQEMTSKNVVFDIVTFNVLINCL-----------FKLGKS 320

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           + E ++  MR  G+ PD+ +++ +L+   +      +L+  N MK + + P   T + ++
Sbjct: 321 DTESIYSAMREMGLSPDLATYNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMI 380

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+E+A ++L EMV  G+ P++ TY          + A+  ++ +  +    L 
Sbjct: 381 NGLCEAGRMENAIDILKEMVLMGLYPTSTTYRILLNISSKSRRADTILQTHELLVNMQLK 440

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V +   YNILI     L        +  D++  G+  D  +Y  LIHG C     K A  
Sbjct: 441 V-DKDVYNILISNLCKLGMTRKATAVLKDMEERGIIADTTTYNALIHGYCISSHLKRAFM 499

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
            +  M+ + + P   T+  L  GL ++ ++ 
Sbjct: 500 TYSTMLSERVSPDIETYNLLLGGLSKAGLIH 530



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 114/260 (43%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G  K      A     EM  R + PN +T N+++NG+C    +           
Sbjct: 341 YNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGRME---------- 390

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA  +  EM + G+ P  T++ I+L++ S++ +    L     +    +      Y+ ++
Sbjct: 391 NAIDILKEMVLMGLYPTSTTYRILLNISSKSRRADTILQTHELLVNMQLKVDKDVYNILI 450

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G    A  +L +M   G+     TYN     Y        A   Y  M  + + 
Sbjct: 451 SNLCKLGMTRKATAVLKDMEERGIIADTTTYNALIHGYCISSHLKRAFMTYSTMLSERVS 510

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN+L+G       +    ++ +++K  GL P+  +Y  L+ G C+ +  KE  +
Sbjct: 511 -PDIETYNLLLGGLSKAGLIHEADDLLSEIKKRGLVPNACTYETLMCGHCKVRNTKECLR 569

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            + EM+ KG +P+   +  L
Sbjct: 570 IYCEMVIKGFIPKPRAYNML 589



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 128/287 (44%), Gaps = 11/287 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + S++YG CK  ++   +  L EM + G+  N V+Y +LL+ + +             + 
Sbjct: 27  FGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSYTILLDALFKAGK----------VA 76

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A      M VRG   DV + ++++    ++ Q + +      + +  + P   TYS+++
Sbjct: 77  EALMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLYQLNLVPNYITYSALI 136

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G I  AE  L EM      P+  TY+     Y  +   + A K+ R+M      
Sbjct: 137 DGRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLHDAFKVLRKMVHKN-A 195

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+ +Y IL+         D+  ++++ +K  GL  ++      ++ +    + +EA +
Sbjct: 196 MPNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAFVNNMKRSGRMEEAEE 255

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
              +M   GL P  V +  L  G ++S  + +   L +++  +++ F
Sbjct: 256 LVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTSKNVVF 302


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 140/266 (52%), Gaps = 11/266 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++I G  K   ++ A     EM+ + + P+VVTY+ L+ G      L          
Sbjct: 210 MYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKL---------- 259

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           ++A  +F++M +  I+PDV +F+I++  + +  + + + + L+ M  + I P V+T++++
Sbjct: 260 KDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTL 319

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V   C   ++++ + +   M++ G+ P+  TY      Y   K  N A K++  M + G+
Sbjct: 320 VDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGV 379

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              N+HSYNI+I  F  + ++D   +++ ++    + PD+ +Y  LI GLC+  K   A 
Sbjct: 380 -TANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAF 438

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLI 266
           Q   EM ++G  P  +T+ ++   L+
Sbjct: 439 QLVNEMHDRGQPPNIITYNSILNALL 464



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 139/268 (51%), Gaps = 13/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK+     A + L  +  + V+ N V YN +++G+ +          +K + 
Sbjct: 176 YGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSK----------DKHVN 225

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  ++ EM  + I PDV ++S ++  +    + + ++D  N M  + I P V T++ +V
Sbjct: 226 DAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILV 285

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMKEDGL 180
              C  GR++ A+ +L  M+   + P+  T+N     + + RK   G       MK+   
Sbjct: 286 DGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQG-- 343

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+ +Y  L+  +  + +++  ++I+N +   G+  ++ SY ++I+G C+ +K  +A 
Sbjct: 344 IKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAM 403

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           + F+EM  K ++P  VT+ +L  GL +S
Sbjct: 404 KLFIEMHHKHIIPDVVTYNSLIDGLCKS 431



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 136/276 (49%), Gaps = 23/276 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI G+  + ++  A     +MI   ++P+V T+N+L++G C+          E  ++
Sbjct: 246 YSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCK----------EGRLK 295

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ V D M ++ I+P+V++F+ ++  + +  + +        M ++GI P V TY S++
Sbjct: 296 KAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLM 355

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   ++  A+++   M + GV  +  +YN     +   K  + AMKL+ +M    + 
Sbjct: 356 DGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHI- 414

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +YN LI       ++    ++ N++   G  P++ +Y  +++ L  K K      
Sbjct: 415 IPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNALLTKLK------ 468

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
                 ++G+ P   T   L +GL QS  L   R++
Sbjct: 469 ------DQGIQPNMHTDTILIKGLCQSGKLEAARKV 498



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 132/286 (46%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI  +C++  I  A   L ++++ G EP+++T N  + G C +  +H +  F     
Sbjct: 106 FNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFH---- 161

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 D++   G   D  S+  +++   +  + + +L  L  +  K +      Y++V+
Sbjct: 162 ------DKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVI 215

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +     + DA +L  EMV   + P   TY+   + +        A+ L+ +M  + + 
Sbjct: 216 DGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENI- 274

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+++++NIL+  F    R+   + + + +    + P++ ++  L+ G C+ +K KE   
Sbjct: 275 KPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKT 334

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            F  M+++G+ P  VT+ +L  G      +   +++   + +  +T
Sbjct: 335 VFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVT 380



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 107/210 (50%), Gaps = 23/210 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L+ G+CK  ++   +     M+++G++PNVVTY  L++G C            K + 
Sbjct: 316 FNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYC----------LVKQVN 365

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+K+F+ M  RG+  +V S++I+++ + +  +   ++     M  K I P V TY+S++
Sbjct: 366 KAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLI 425

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+I  A +L+ EM   G  P+  TYN                 L  ++K+ G+ 
Sbjct: 426 DGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNA------------LLTKLKDQGI- 472

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDV 211
            PNMH+  ILI       +++  R+++ D+
Sbjct: 473 QPNMHTDTILIKGLCQSGKLEAARKVFEDL 502



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 22/140 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G+CKI ++D A +   EM  + + P+VVTYN L++G+C+             I 
Sbjct: 386 YNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGK----------IS 435

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ +EM  RG  P++ +++ +L+              L  +K++GI P + T + ++
Sbjct: 436 YAFQLVNEMHDRGQPPNIITYNSILNAL------------LTKLKDQGIQPNMHTDTILI 483

Query: 122 KCLCSCGRIEDAEELLGEMV 141
           K LC  G++E A ++  +++
Sbjct: 484 KGLCQSGKLEAARKVFEDLL 503



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/288 (19%), Positives = 110/288 (38%), Gaps = 46/288 (15%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N +D A      ++ +        +N +L  + +    H      +          +M  
Sbjct: 47  NDVDGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKHYHTVLSLSQ----------QMEF 96

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
            GI P+  +F+I+++ + +      +   L  + + G  P + T ++ +K  C  G+I  
Sbjct: 97  EGINPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQ 156

Query: 133 AEELLGEMVR--------------NGVCPSAET---------------------YNCFFK 157
           A     ++V               NG+C   ET                     YN    
Sbjct: 157 ALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVID 216

Query: 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
                K  N A  LY +M    +  P++ +Y+ LI  F  + ++    +++N +    + 
Sbjct: 217 GMSKDKHVNDAFDLYSEMVAKRIS-PDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIK 275

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           PD+ ++ +L+ G C++ + K+A      M+ + + P   TF TL  G 
Sbjct: 276 PDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGF 323



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 86/210 (40%), Gaps = 17/210 (8%)

Query: 96  QLSLDKLNFMK-----------EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           Q S +  NF+K           +K   P    YSS+     S   ++ A  L   ++   
Sbjct: 9   QKSFNLFNFLKIPISISFLILLQKNFIP----YSSISTTFHS-NDVDGAVSLFNSLLHQN 63

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
              +A  +N         K  +  + L +QM+ +G+  PN  ++NILI  F  L  +   
Sbjct: 64  PTLTAFEFNKILGSLVKSKHYHTVLSLSQQMEFEGIN-PNFVTFNILINCFCQLGLIPFA 122

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             +   +   G  PD+ +    I G C K +  +A  +  +++  G    +V++ TL  G
Sbjct: 123 FSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLING 182

Query: 265 LIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           L +    R   +L +++D + +   +   N
Sbjct: 183 LCKVGETRAALQLLRRVDGKLVQLNAVMYN 212


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 131/267 (49%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G CK  R+D A +FL  M   G +PNV+T+N++L  +C                
Sbjct: 120 YNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRW----------M 169

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AEK+  +M  +G  P V +F+I+++   R      ++D L  M   G  P   +Y+ ++
Sbjct: 170 DAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLL 229

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   +++ A E L  MV  G  P   TYN            + A+++  Q+   G C
Sbjct: 230 HGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKG-C 288

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +YN +I     + + +   ++ ++++  GL PD+ +Y+ L+ GL  + K  EA +
Sbjct: 289 SPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIK 348

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
           +F ++   G+ P  +T+ ++  GL +S
Sbjct: 349 FFHDLEGLGIRPNAITYNSIMLGLCKS 375



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 128/256 (50%), Gaps = 11/256 (4%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           CK + +  A + L EM  +G +P+VVTYNVL+NG+C+   L  + +F           + 
Sbjct: 93  CKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKF----------LNN 142

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           M   G +P+V + +I+L       +   +   L+ M  KG  P+V T++ ++  LC  G 
Sbjct: 143 MPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGL 202

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           +  A ++L +M  +G  P++ +YN     +   K  + A++    M   G C P++ +YN
Sbjct: 203 LGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG-CYPDIVTYN 261

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            L+       ++D+  EI N +   G  P L +Y  +I GL +  K + A +   EM  K
Sbjct: 262 TLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRK 321

Query: 250 GLLPQKVTFETLYRGL 265
           GL P  +T+ +L  GL
Sbjct: 322 GLKPDIITYSSLVSGL 337



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 124/242 (51%), Gaps = 12/242 (4%)

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           E  +  A K+ DEMR +G +PDV +++++++   +  +   ++  LN M   G  P V T
Sbjct: 95  ESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVIT 154

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG-AMKLYRQM 175
           ++ +++ +CS GR  DAE+LL +M+R G  PS  T+N     +  R+   G A+ +  +M
Sbjct: 155 HNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILI-NFLCRQGLLGRAIDILEKM 213

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
              G C PN  SYN L+  F    +MD   E  + +   G  PD+ +Y  L+  LC+  K
Sbjct: 214 PMHG-CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGK 272

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK-------KKLDEESITF 288
              A +   ++  KG  P  +T+ T+  GL  S + +T R +K       K L  + IT+
Sbjct: 273 VDVAVEILNQLSSKGCSPVLITYNTVIDGL--SKVGKTERAIKLLDEMRRKGLKPDIITY 330

Query: 289 GS 290
            S
Sbjct: 331 SS 332



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 124/273 (45%), Gaps = 26/273 (9%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS----ERF---- 56
           ++   C   R   AE+ L +M+ +G  P+VVT+N+L+N +CR+  L  +    E+     
Sbjct: 158 ILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG 217

Query: 57  -----------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
                            EK +  A +  D M  RG  PD+ +++ +L    +  +  +++
Sbjct: 218 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 277

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           + LN +  KG  P + TY++V+  L   G+ E A +LL EM R G+ P   TY+      
Sbjct: 278 EILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 337

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
                 + A+K +  ++  G+  PN  +YN ++       + D   +    +      P 
Sbjct: 338 SREGKVDEAIKFFHDLEGLGI-RPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPT 396

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
             +YT+LI G+  +   KEA     E+  +GL+
Sbjct: 397 EATYTILIEGIAYEGLAKEALDLLNELCSRGLV 429



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 1/187 (0%)

Query: 79  VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLG 138
           ++ FS  +    +      ++  L+ M+ KG  P V TY+ ++  +C  GR+++A + L 
Sbjct: 82  LSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLN 141

Query: 139 EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL 198
            M   G  P+  T+N   +          A KL   M   G C P++ ++NILI      
Sbjct: 142 NMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKG-CSPSVVTFNILINFLCRQ 200

Query: 199 NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
             +    +I   +   G  P+  SY  L+HG C+++K   A +Y   M+ +G  P  VT+
Sbjct: 201 GLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTY 260

Query: 259 ETLYRGL 265
            TL   L
Sbjct: 261 NTLLTAL 267


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 139/282 (49%), Gaps = 15/282 (5%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIE-RGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           ++I  + K +  D A      M E  G +P + +YN LLN      +L  S ++++    
Sbjct: 83  TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLN------ALIESNKWDE---- 132

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           AE  F      G+ P++ +++I++ +  R  Q   + + LN+M E+G  P V +Y +++ 
Sbjct: 133 AESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLIN 192

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            L   G + DA +L  EM   GV P    YN     +  + D   A +++ ++ +     
Sbjct: 193 SLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVY 252

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN+ SYN++I       + D   EIW+ +K +  G DL +Y+ LIHGLC       A + 
Sbjct: 253 PNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRV 312

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKKK 280
           + EM E G+ P  V + T+  G +++    + L  W+ ++K+
Sbjct: 313 YKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKE 354



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 131/270 (48%), Gaps = 11/270 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I G C+  R+D     L +M + G +PN    N ++NG  R + L  + RF     
Sbjct: 432 YSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRF----- 486

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                F  M  +G  P V +++ +++  S+A +   +   +  M  KG  P + TYS ++
Sbjct: 487 -----FGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLM 541

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   +++ A  L  + +  G  P  + +N              A++LY +MK+   C
Sbjct: 542 NGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRK-C 600

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN+ ++N L+  F  +   +   +IW+ +   G  PD+ SY + + GLC   +  +A  
Sbjct: 601 VPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVG 660

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           +  + +++G+LP  +T+  L R ++ +  L
Sbjct: 661 FLNDAVDRGVLPTAITWNILVRAVLDNGAL 690



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 136/302 (45%), Gaps = 40/302 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y SL+    + N+ D AE F       G+ PN+ TYN+L+   CR+     ++       
Sbjct: 117 YNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMW 176

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  + +A K+FDEM  RG+ PDV  ++I++  + +     
Sbjct: 177 EQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKG--- 233

Query: 97  LSLDKLN-------FMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
              D LN        +K   + P + +Y+ ++  LC CG+ +++ E+   M +N      
Sbjct: 234 ---DILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDL 290

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
            TY+       G  + +GA ++Y++M E+G+  P++  YN ++  ++   R++   E+W 
Sbjct: 291 YTYSTLIHGLCGSGNLDGATRVYKEMAENGVS-PDVVVYNTMLNGYLRAGRIEECLELWK 349

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            ++  G    + SY +LI GL E  K  EA   +  + EK      +T+  L  GL ++ 
Sbjct: 350 VMEKEGC-RTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNG 408

Query: 270 ML 271
            L
Sbjct: 409 YL 410



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 133/341 (39%), Gaps = 63/341 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI+G C    +D A R   EM E GV P+VV YN +LNG  R   +       K + 
Sbjct: 293 YSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVME 352

Query: 62  NA------------------EKVFDEMRVRGIEP------DVTSFSIVLH---------- 87
                                KV + + +  + P      D  ++ +++H          
Sbjct: 353 KEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNK 412

Query: 88  ---VYSRAHQPQLSLDK----------------------LNFMKEKGICPTVATYSSVVK 122
              +   A   +  LD                       L+ M + G  P     ++V+ 
Sbjct: 413 ALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVIN 472

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
                 ++EDA    G MV  G  P+  TYN         +  + A  L ++M   G   
Sbjct: 473 GFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGW-K 531

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PNM +Y++L+       ++DM   +W      G  PD+  + ++IHGLC   K ++A Q 
Sbjct: 532 PNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQL 591

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           + EM ++  +P  VT  TL  G  +   +R + R  K  D 
Sbjct: 592 YSEMKQRKCVPNLVTHNTLMEGFYK---VRDFERASKIWDH 629



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 112/242 (46%), Gaps = 3/242 (1%)

Query: 63  AEKVFDEMR-VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           A  +F  M  + G +P + S++ +L+    +++   +     + +  G+ P + TY+ ++
Sbjct: 97  ALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILI 156

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   + + A+ELL  M   G  P   +Y             + A+KL+ +M E G+ 
Sbjct: 157 KISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGV- 215

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDV-KGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            P++  YNILI  F     +    EIW  + KG  + P++ SY ++I+GLC+  K+ E+ 
Sbjct: 216 TPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESF 275

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
           + +  M +        T+ TL  GL  S  L    R+ K++ E  ++      N     Y
Sbjct: 276 EIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGY 335

Query: 301 RR 302
            R
Sbjct: 336 LR 337



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 10/130 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+  +I+G C   +++ A +   EM +R   PN+VT+N L+ G       +    FE+  
Sbjct: 571 MHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEG------FYKVRDFER-- 622

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K++D +   G +PD+ S++I L      H+   ++  LN   ++G+ PT  T++ +
Sbjct: 623 --ASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNIL 680

Query: 121 VKCLCSCGRI 130
           V+ +   G +
Sbjct: 681 VRAVLDNGAL 690



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 1/150 (0%)

Query: 139 EMVRNGVCPSAETYN-CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
           E++R   C   E       K Y      + A+ ++++M E   C P + SYN L+   + 
Sbjct: 67  ELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIE 126

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
            N+ D     +   +  GL P+L +Y +LI   C K+++ +A +    M E+G  P   +
Sbjct: 127 SNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFS 186

Query: 258 FETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           + TL   L ++  +    +L  ++ E  +T
Sbjct: 187 YGTLINSLAKNGYMSDALKLFDEMPERGVT 216


>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
 gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
 gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
          Length = 410

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 131/263 (49%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+      +M      EM   GVEPN+ TYN L+   CR              +
Sbjct: 76  YTALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNCLIGEWCRTGEF----------K 125

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +FDEM V+G+  +V S++I++    R  + + ++     M+ +GI P++ T++ ++
Sbjct: 126 SARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLI 185

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G++ +A     +M   G+ PS  TYN     +   +D   A++ +  MKE GL 
Sbjct: 186 DGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGL- 244

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P   +Y ILI  F   N MD    + ++++ +GL  D+ SY +L+H LC + K   A +
Sbjct: 245 APTKVTYTILIAAFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARK 304

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F  M  KG+ P  V ++ +  G
Sbjct: 305 LFQSMDLKGVKPNSVLYDMMIYG 327



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 126/257 (49%), Gaps = 11/257 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI  WC+      A     EM  +GV  NVV+YN+L+ G+CR + L          +
Sbjct: 111 YNCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKL----------K 160

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F+ MR  GI P + +F++++  Y +A +   +L   N MK  G+ P+V TY+ ++
Sbjct: 161 DAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELI 220

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    I  A     +M   G+ P+  TY      +    + + A  +  +M++ GL 
Sbjct: 221 CGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEKAGLE 280

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V ++ SY +L+       +M   R+++  +   G+ P+   Y M+I+G   +    +A +
Sbjct: 281 V-DVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPNSVLYDMMIYGYGREGSSYKALR 339

Query: 242 YFVEMIEKGLLPQKVTF 258
             +EM + GL+P   ++
Sbjct: 340 LIMEMRKNGLIPNVASY 356



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 94/199 (47%), Gaps = 2/199 (1%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           DV + + ++HV  ++     +    + M   G+ P   TY++++      G  E    L 
Sbjct: 37  DVAACTALVHVCCQSGDVAEARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALF 96

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            EM R+GV P+  TYNC   E+    +   A  L+ +M   G+ V N+ SYNILI     
Sbjct: 97  AEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGV-VHNVVSYNILIAGLCR 155

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
            +++    +++  ++  G+ P + ++ +LI G  +  K   A  +F +M   GL P  VT
Sbjct: 156 HSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVT 215

Query: 258 FETLYRGLIQ-SDMLRTWR 275
           +  L  G  +  D+ R  R
Sbjct: 216 YNELICGFCRVRDIARAVR 234



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 80/147 (54%), Gaps = 10/147 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI  + K N +D A   L EM + G+E +V +Y VLL+ +C           E  + 
Sbjct: 251 YTILIAAFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHALC----------MEGKMM 300

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+F  M ++G++P+   + ++++ Y R      +L  +  M++ G+ P VA+Y   +
Sbjct: 301 HARKLFQSMDLKGVKPNSVLYDMMIYGYGREGSSYKALRLIMEMRKNGLIPNVASYCLTI 360

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPS 148
           + LC+ G+ ++AE L+ +M   G+  S
Sbjct: 361 RLLCNEGKCQEAEALIDDMEHAGLQTS 387



 Score = 37.4 bits (85), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  +IYG+ +      A R + EM + G+ PNV +Y + +  +C           E   
Sbjct: 320 LYDMMIYGYGREGSSYKALRLIMEMRKNGLIPNVASYCLTIRLLCN----------EGKC 369

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93
           + AE + D+M   G++   T   I+L   +R H
Sbjct: 370 QEAEALIDDMEHAGLQTSETICRILLDAKARLH 402


>gi|297599556|ref|NP_001047351.2| Os02g0601600 [Oryza sativa Japonica Group]
 gi|255671066|dbj|BAF09265.2| Os02g0601600 [Oryza sativa Japonica Group]
          Length = 466

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 132/261 (50%), Gaps = 18/261 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +   ++GWC I RID A   + EM  RG  P+V+TY  +L   C+          ++  R
Sbjct: 188 FNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVITYTTVLEAYCK----------QRNFR 237

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +V D M  +G  P+V ++++++   ++  + + +L   + MK  G  P    Y+S++
Sbjct: 238 RVYEVLDSMGSQGCHPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGCKPDTLFYNSLI 297

Query: 122 KCLCSCGRIEDAEELLG-EMVRNGVCPSAETYNCFFKE--YRGRKDANGAMKLYRQMKED 178
             L   G + +A ++   EM  NGV  +  TYN       Y GR D   A+ + ++M+  
Sbjct: 298 NLLGKSGHLFEASQVFRVEMPMNGVSHNLATYNTMISIFCYYGRDD--DALNVLKEMEAQ 355

Query: 179 GLCVPNMHSYNILIGMFMA-LNRMDMVREIWNDVKGS-GLGPDLDSYTMLIHGLCEKQKW 236
             C P++ SY  L+ +F++   + D VR + +++     LG DLD+YT+LIHGLC     
Sbjct: 356 S-CKPDIQSYRPLLRLFLSRRGQADTVRHLLSELTSKHNLGLDLDTYTLLIHGLCRVGDT 414

Query: 237 KEACQYFVEMIEKGLLPQKVT 257
             A Q F EM+   + P+  T
Sbjct: 415 VWAYQLFDEMVSSEIAPRSKT 435



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/166 (18%), Positives = 73/166 (43%), Gaps = 3/166 (1%)

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
           L+ M  +G+  TV T +  ++ L    R +D   L  ++   G+  + ET N        
Sbjct: 105 LSDMHGRGLV-TVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLDVLCK 163

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
            +    A +++  +       P+ +++NI +  + ++ R+D       ++K  G  P + 
Sbjct: 164 ERKIEVAREVFAVLSPH--IPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVI 221

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           +YT ++   C+++ ++   +    M  +G  P  +T+  +   L +
Sbjct: 222 TYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAK 267


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 144/311 (46%), Gaps = 26/311 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI  +CK   I  A+    E+ +RG+ P  V++N L+NG+C+  +L    R +KT+ 
Sbjct: 226 YNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTME 285

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     AE++FDEM+ RG+ P+  +F+ ++    R+ +  
Sbjct: 286 ENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRID 345

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +++  + M   G+ P +  Y++++  LC  G +  A +L+ EM   G+ P   TY    
Sbjct: 346 SAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLI 405

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y    D   AM++ + M E+G+ + N+ ++  LI  F    R+        ++  +G+
Sbjct: 406 DGYCKEGDLESAMEIRKGMNEEGVVLDNV-AFTALISGFCRDGRVRDAERTLREMVEAGM 464

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD  +YTM+I G C+K   K   +   EM   G  P  +T+  L  GL +   ++    
Sbjct: 465 KPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANM 524

Query: 277 LKKKLDEESIT 287
           L + +    +T
Sbjct: 525 LLEAMLNLGVT 535



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 132/266 (49%), Gaps = 11/266 (4%)

Query: 21  FLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80
           F  E++E G  P V  YN+L+N  C+          E +IR+A+ +F+E+R RG+ P   
Sbjct: 210 FYSEILEYGFPPKVQYYNILINKFCK----------EGSIRDAKLIFNEIRKRGLRPTTV 259

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           SF+ +++   ++            M+E  I P V TYS ++  LC  GR++ AE+L  EM
Sbjct: 260 SFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEM 319

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
            + G+ P+  T+          +  + AM  Y QM   G+  P++  YN L+     +  
Sbjct: 320 QQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGV-KPDLVMYNTLLNGLCKVGD 378

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           ++  R++ ++++  G+ PD  +YT LI G C++   + A +    M E+G++   V F  
Sbjct: 379 VNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTA 438

Query: 261 LYRGLIQSDMLRTWRRLKKKLDEESI 286
           L  G  +   +R   R  +++ E  +
Sbjct: 439 LISGFCRDGRVRDAERTLREMVEAGM 464



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 129/260 (49%), Gaps = 14/260 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G C+  RID A     +M+  GV+P++V YN LLNG+C+             + 
Sbjct: 331 FTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGD----------VN 380

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ DEMR+ G++PD  +++ ++  Y +    + +++    M E+G+      +++++
Sbjct: 381 KARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALI 440

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR+ DAE  L EMV  G+ P   TY      Y  + +     KL ++M+ +G  
Sbjct: 441 SGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQING-H 499

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +YN+L+       +M     +   +   G+ PD  +Y +L+ G C+  K ++  +
Sbjct: 500 KPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLLK 559

Query: 242 YFVEMIEKGLLPQKVTFETL 261
                 EKGL+     + +L
Sbjct: 560 L---RNEKGLIVDYAYYTSL 576



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 28/207 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT- 59
           MY +L+ G CK+  ++ A + + EM   G++P+ +TY  L++G C+   L  +    K  
Sbjct: 365 MYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGM 424

Query: 60  ------------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                   +R+AE+   EM   G++PD  ++++V+  Y +    
Sbjct: 425 NEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNV 484

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           ++    L  M+  G  P V TY+ ++  LC  G++++A  LL  M+  GV P   TYN  
Sbjct: 485 KMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNIL 544

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCV 182
            + +     A   +KL     E GL V
Sbjct: 545 LEGHCKNGKAEDLLKL---RNEKGLIV 568



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%)

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           A++ +R ++     +P  H    L+   +  N    +   ++++   G  P +  Y +LI
Sbjct: 172 AIQCFRLVRNSNFQIP-FHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILI 230

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +  C++   ++A   F E+ ++GL P  V+F TL  GL +S  L    RLKK ++E  I
Sbjct: 231 NKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRI 289


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 131/265 (49%), Gaps = 11/265 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I G C+  R+D     L +M + G +PN    N ++NG  R + L  + RF     
Sbjct: 407 YSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRF----- 461

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                F  M  +G  P V +++ +++  S+A +   +   +  M +KG  P + TYS ++
Sbjct: 462 -----FGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLM 516

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   +++ A  L  + +  G  P  + +N              A++LY +MK+   C
Sbjct: 517 NGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRN-C 575

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN+ ++N L+  F  +   +   +IW+ +   GL PD+ SY + + GLC   +  +A  
Sbjct: 576 VPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVG 635

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLI 266
           +  + +++G+LP  +T+  L +G +
Sbjct: 636 FLNDAVDRGVLPTAITWNILVQGYL 660



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 128/256 (50%), Gaps = 14/256 (5%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G +P + +YN LLN      +L  S ++++    AE  F      G+ P++ +++I++ +
Sbjct: 84  GCQPGIRSYNSLLN------ALIESNKWDE----AESFFLYFETMGLSPNLQTYNILIKI 133

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
             R  Q   + + LN+M  +G  P V +Y +++  L   G + DA +L  EM   GV P 
Sbjct: 134 SCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPD 193

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
              YN     +  + D   A +++ ++ +     PN+ SYN++I       + D   EIW
Sbjct: 194 VACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIW 253

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           + +K +  G DL +Y+ LIHGLC       A + + EM E G+ P  V + T+  G +++
Sbjct: 254 HRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRA 313

Query: 269 ----DMLRTWRRLKKK 280
               + L  W+ ++K+
Sbjct: 314 GRIEECLELWKVMEKE 329



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 136/302 (45%), Gaps = 40/302 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y SL+    + N+ D AE F       G+ PN+ TYN+L+   CR+     ++       
Sbjct: 92  YNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMW 151

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  + +A K+FDEM  RG+ PDV  ++I++  + +     
Sbjct: 152 GQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKG--- 208

Query: 97  LSLDKLN-------FMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
              D LN        +K   + P + +Y+ ++  LC CG+ +++ E+   M +N      
Sbjct: 209 ---DILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDL 265

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
            TY+       G  + +GA ++Y++M E+G+  P++  YN ++  ++   R++   E+W 
Sbjct: 266 YTYSTLIHGLCGSGNLDGATRVYKEMAENGVS-PDVVVYNTMLNGYLRAGRIEECLELWK 324

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            ++  G    + SY +LI GL E  K  EA   +  + EK      +T+  L  GL ++ 
Sbjct: 325 VMEKEGC-RTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNG 383

Query: 270 ML 271
            L
Sbjct: 384 YL 385



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 132/308 (42%), Gaps = 31/308 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI+G C    +D A R   EM E GV P+VV YN +LNG  R   +       K + 
Sbjct: 268 YSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVME 327

Query: 62  NA------------------EKVFDEMRVRGIEP------DVTSFSIVLHVYSRAHQPQL 97
                                KV + + +  + P      D  ++ +++H   +      
Sbjct: 328 KEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNK 387

Query: 98  SLDKLNFMKE-KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           +L  L   +  +G   T A YSS++  LC  GR+++   +L +M ++G  P+    N   
Sbjct: 388 ALSILEEAENGRGDLDTFA-YSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVI 446

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +        A++ +  M   G C P + +YN LI       R      +  ++   G 
Sbjct: 447 NGFVRASKLEDALRFFGNMVSKG-CFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGW 505

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLR 272
            P++ +Y++L++GLC+ +K   A   + + +EKG  P       +  GL  S    D L+
Sbjct: 506 KPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQ 565

Query: 273 TWRRLKKK 280
            +  +K++
Sbjct: 566 LYSEMKQR 573



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 125/282 (44%), Gaps = 14/282 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G  +  ++D A      + E+    + +TY VL++G+C+   L+ +    +   
Sbjct: 337 YNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAE 396

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N          RG + D  ++S +++   R  +       L+ M + G  P     ++V+
Sbjct: 397 NG---------RG-DLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVI 446

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                  ++EDA    G MV  G  P+  TYN         +  + A  L ++M + G  
Sbjct: 447 NGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGW- 505

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PNM +Y++L+       ++DM   +W      G  PD+  + ++IHGLC   K ++A Q
Sbjct: 506 KPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQ 565

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            + EM ++  +P  VT  TL  G  +   +R + R  K  D 
Sbjct: 566 LYSEMKQRNCVPNLVTHNTLMEGFYK---VRDFERASKIWDH 604



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 114/245 (46%), Gaps = 13/245 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRAS-LHPSERFEKTI 60
           Y +LI    K   +  A +   EM ERGV P+V  YN+L++G  ++   L+ SE +E+ +
Sbjct: 162 YGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLL 221

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           +             + P++ S++++++   +  +   S +  + MK+      + TYS++
Sbjct: 222 KGPS----------VYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTL 271

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G ++ A  +  EM  NGV P    YN     Y         ++L++ M+++G 
Sbjct: 272 IHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG- 330

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
               + SYNILI       ++D    IW  +       D  +Y +L+HGLC+     +A 
Sbjct: 331 -CRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKAL 389

Query: 241 QYFVE 245
               E
Sbjct: 390 SILEE 394



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 112/242 (46%), Gaps = 3/242 (1%)

Query: 63  AEKVFDEMR-VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           A  +F  M  + G +P + S++ +L+    +++   +     + +  G+ P + TY+ ++
Sbjct: 72  ALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILI 131

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   + + A+ELL  M   G  P   +Y             + A+KL+ +M E G+ 
Sbjct: 132 KISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGV- 190

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDV-KGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            P++  YNILI  F     +    EIW  + KG  + P++ SY ++I+GLC+  K+ E+ 
Sbjct: 191 TPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESF 250

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
           + +  M +        T+ TL  GL  S  L    R+ K++ E  ++      N     Y
Sbjct: 251 EIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGY 310

Query: 301 RR 302
            R
Sbjct: 311 LR 312



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 85/162 (52%), Gaps = 10/162 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ G C+  ++DMA     + +E+G +P+V  +N++++G+C              + 
Sbjct: 512 YSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGK----------VE 561

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A +++ EM+ R   P++ + + ++  + +    + +    + + + G+ P + +Y+  +
Sbjct: 562 DALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITL 621

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163
           K LCSC RI DA   L + V  GV P+A T+N   + Y   K
Sbjct: 622 KGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVQGYLALK 663



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 10/122 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+  +I+G C   +++ A +   EM +R   PN+VT+N L+ G       +    FE+  
Sbjct: 546 MHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEG------FYKVRDFER-- 597

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K++D +   G++PD+ S++I L      H+   ++  LN   ++G+ PT  T++ +
Sbjct: 598 --ASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNIL 655

Query: 121 VK 122
           V+
Sbjct: 656 VQ 657


>gi|47848296|dbj|BAD22160.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 454

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 132/261 (50%), Gaps = 18/261 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +   ++GWC I RID A   + EM  RG  P+V+TY  +L   C+          ++  R
Sbjct: 176 FNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVITYTTVLEAYCK----------QRNFR 225

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +V D M  +G  P+V ++++++   ++  + + +L   + MK  G  P    Y+S++
Sbjct: 226 RVYEVLDSMGSQGCHPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGCKPDTLFYNSLI 285

Query: 122 KCLCSCGRIEDAEELLG-EMVRNGVCPSAETYNCFFKE--YRGRKDANGAMKLYRQMKED 178
             L   G + +A ++   EM  NGV  +  TYN       Y GR D   A+ + ++M+  
Sbjct: 286 NLLGKSGHLFEASQVFRVEMPMNGVSHNLATYNTMISIFCYYGRDD--DALNVLKEMEAQ 343

Query: 179 GLCVPNMHSYNILIGMFMA-LNRMDMVREIWNDVKGS-GLGPDLDSYTMLIHGLCEKQKW 236
             C P++ SY  L+ +F++   + D VR + +++     LG DLD+YT+LIHGLC     
Sbjct: 344 S-CKPDIQSYRPLLRLFLSRRGQADTVRHLLSELTSKHNLGLDLDTYTLLIHGLCRVGDT 402

Query: 237 KEACQYFVEMIEKGLLPQKVT 257
             A Q F EM+   + P+  T
Sbjct: 403 VWAYQLFDEMVSSEIAPRSKT 423



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 31/166 (18%), Positives = 73/166 (43%), Gaps = 3/166 (1%)

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
           L+ M  +G+  TV T +  ++ L    R +D   L  ++   G+  + ET N        
Sbjct: 93  LSDMHGRGLV-TVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLDVLCK 151

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
            +    A +++  +       P+ +++NI +  + ++ R+D       ++K  G  P + 
Sbjct: 152 ERKIEVAREVFAVLSPH--IPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVI 209

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           +YT ++   C+++ ++   +    M  +G  P  +T+  +   L +
Sbjct: 210 TYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAK 255


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 128/263 (48%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G  K  R+D A  FL EM+E G++PN  TY   ++G    +    ++++ K   
Sbjct: 490 YNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVK--- 546

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                  EMR  G+ P+    + +++ Y +  +   +      M ++GI     TY+ ++
Sbjct: 547 -------EMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLM 599

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L    +++DAEE+  EM   G+ P   +Y      +    +   A  ++ +M E+GL 
Sbjct: 600 NGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGL- 658

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+  YN+L+G F     ++  +E+ +++   GL P+  +Y  +I G C+     EA +
Sbjct: 659 TPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFR 718

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F EM  KGL+P    + TL  G
Sbjct: 719 LFDEMKLKGLVPDSFVYTTLVDG 741



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 143/320 (44%), Gaps = 49/320 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G+C+   +      L EM +R +  +  TY  ++ G+C    L           
Sbjct: 385 YASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLD---------- 434

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  EM   G  P+V  ++ ++  + +  +   ++  L  MKE+GI P +  Y+S++
Sbjct: 435 GAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLI 494

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L    R+++A   L EMV NG+ P+A TY  F   Y    +   A K  ++M+E G+ 
Sbjct: 495 IGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGV- 553

Query: 182 VPN-----------------------------------MHSYNILIGMFMALNRMDMVRE 206
           +PN                                     +Y +L+      +++D   E
Sbjct: 554 LPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEE 613

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           I+ +++G G+ PD+ SY +LI+G  +    ++A   F EM+E+GL P  + +  L  G  
Sbjct: 614 IFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFC 673

Query: 267 QSDMLRTWRRLKKKLDEESI 286
           +S  +   + L   LDE S+
Sbjct: 674 RSGEIEKAKEL---LDEMSV 690



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 135/291 (46%), Gaps = 30/291 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  LI G CKI R++ A+  L EM   GV  +  TY++L++G+ +  +   ++       
Sbjct: 280 YDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMV 339

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  +  A+ +FD M   G+ P   +++ ++  Y R    +
Sbjct: 340 SHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVR 399

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
              + L  MK++ I  +  TY +VVK +CS G ++ A  ++ EM+ +G  P+   Y    
Sbjct: 400 QGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLI 459

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           K +        AM++ ++MKE G+  P++  YN LI       RMD  R    ++  +GL
Sbjct: 460 KTFLQNSRFGDAMRVLKEMKEQGIA-PDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGL 518

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            P+  +Y   I G  E  ++  A +Y  EM E G+LP KV    L  GLI 
Sbjct: 519 KPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKV----LCTGLIN 565



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 130/277 (46%), Gaps = 11/277 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+LI  + + +R   A R L EM E+G+ P++  YN L+ G+ +   +  +  F    
Sbjct: 454 IYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSF---- 509

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                   EM   G++P+  ++   +  Y  A +   +   +  M+E G+ P     + +
Sbjct: 510 ------LVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGL 563

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G++ +A      MV  G+   A+TY             + A +++R+M+  G+
Sbjct: 564 INEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGI 623

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ SY +LI  F  L  M     I++++   GL P++  Y ML+ G C   + ++A 
Sbjct: 624 A-PDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAK 682

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           +   EM  KGL P  VT+ T+  G  +S  L    RL
Sbjct: 683 ELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRL 719



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 132/299 (44%), Gaps = 47/299 (15%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T LI  +CK  ++  A      M+++G+  +  TY VL+NG+ +             + +
Sbjct: 561 TGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKN----------DKVDD 610

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           AE++F EMR +GI PDV S+ ++++ +S+    Q +    + M E+G+ P V  Y+ ++ 
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL-- 180
             C  G IE A+ELL EM   G+ P+A TY      Y    D   A +L+ +MK  GL  
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVP 730

Query: 181 -------------------------------CVPNMHSYNILIGMFMALNRMDMVREIWN 209
                                          C  +   +N LI       + ++  E+ N
Sbjct: 731 DSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLN 790

Query: 210 DVKGSGLG----PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            +          P+  +Y ++I  LC++   + A + F +M    L+P  +T+ +L  G
Sbjct: 791 RLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNG 849



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 122/272 (44%), Gaps = 14/272 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+ K+  +  A     EM+E G+ PNV+ YN+LL G CR             I 
Sbjct: 630 YGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE----------IE 679

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++ DEM V+G+ P+  ++  ++  Y ++     +    + MK KG+ P    Y+++V
Sbjct: 680 KAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLV 739

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK-EYRGRKDANGAMKLYRQMKE--D 178
              C    +E A  + G   + G   S   +N      ++  K       L R M    D
Sbjct: 740 DGCCRLNDVERAITIFGTN-KKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFD 798

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
               PN  +YNI+I        ++  +E+++ ++ + L P + +YT L++G  +  +  E
Sbjct: 799 RFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAE 858

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
               F E I  G+ P  + +  +    ++  M
Sbjct: 859 MFPVFDEAIAAGIEPDHIMYSVIINAFLKEGM 890



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 125/294 (42%), Gaps = 26/294 (8%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI-------------- 60
           +D A +    MI +G+ P   TY+VL++G+C+   L  ++     +              
Sbjct: 258 VDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSL 317

Query: 61  --------RNAEK---VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG 109
                   RNA+    +  EM   GI      +   + V S+    + +    + M   G
Sbjct: 318 LIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASG 377

Query: 110 ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAM 169
           + P    Y+S+++  C    +    ELL EM +  +  S  TY    K      D +GA 
Sbjct: 378 LIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAY 437

Query: 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
            + ++M   G C PN+  Y  LI  F+  +R      +  ++K  G+ PD+  Y  LI G
Sbjct: 438 NIVKEMIASG-CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIG 496

Query: 230 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           L + ++  EA  + VEM+E GL P   T+     G I++    +  +  K++ E
Sbjct: 497 LSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 113/261 (43%), Gaps = 35/261 (13%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           NR+D+       M+ER V  +V TY++L+   CR  ++   +     +   EK F     
Sbjct: 200 NRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGK---DVLFKTEKEF----- 251

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE----KGICPTVATYSSVVKCLCSCG 128
                                   L++D    +KE    KG+ P   TY  ++  LC   
Sbjct: 252 --------------------RTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIK 291

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV-PNMHS 187
           R+EDA+ LL EM   GV     TY+         ++A+ A  L  +M   G+ + P M  
Sbjct: 292 RLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYM-- 349

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           Y+  I +      M+  + +++ +  SGL P   +Y  LI G C ++  ++  +  VEM 
Sbjct: 350 YDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMK 409

Query: 248 EKGLLPQKVTFETLYRGLIQS 268
           ++ ++    T+ T+ +G+  S
Sbjct: 410 KRNIVISPYTYGTVVKGMCSS 430



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 105/262 (40%), Gaps = 32/262 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           Y ++I G+CK   +  A R   EM  +G+ P+   Y  L++G CR               
Sbjct: 700 YCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNK 759

Query: 47  ---RASLHPSE-------RFEKTIRNAE---KVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93
               +S  P         +F KT    E   ++ D    R  +P+  +++I++    +  
Sbjct: 760 KGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEG 819

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY- 152
             + + +  + M+   + PTV TY+S++      GR  +   +  E +  G+ P    Y 
Sbjct: 820 NLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYS 879

Query: 153 ---NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
              N F KE    K      +++ +   D  C  ++ +   L+  F  +  M++  ++  
Sbjct: 880 VIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVME 939

Query: 210 DVKGSGLGPDLDSYTMLIHGLC 231
           ++      PD  +   LI+  C
Sbjct: 940 NMVRLQYIPDSATVIELINESC 961


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 135/306 (44%), Gaps = 50/306 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+C++  ++ A R   EM+E+G  P+V TY +L+NG                +R
Sbjct: 422 YNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNG-------------SHKVR 468

Query: 62  N---AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           N   A + FDEM  +G++PD  +++  +           +      M  KGI P   TY+
Sbjct: 469 NLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYN 528

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++  LC  G ++DA++L  +MV +G+ P   TY C    +  R   + A KL   M  D
Sbjct: 529 VIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSD 588

Query: 179 GL-------------CV---------------------PNMHSYNILIGMFMALNRMDMV 204
           GL             C                      PN  +YN+LI       R  + 
Sbjct: 589 GLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLA 648

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
              ++++   GL P+  +YT+LI G C +  W +A + + EM + G+ P   T   L++G
Sbjct: 649 YHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKG 708

Query: 265 LIQSDM 270
             +  M
Sbjct: 709 FDKGHM 714



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 130/276 (47%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI    +   +   E    EM   G+ P +VTYN +++G+ +      SE+ E    
Sbjct: 317 YNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLK------SEQVEA--- 367

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+  F EMR  G+ PD+ +++ +L+ Y +A   + +L  L  ++  G+ PTV TY++++
Sbjct: 368 -AQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLI 426

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +E+A  L  EMV  G  P   TY          ++   A + + +M   GL 
Sbjct: 427 DGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGL- 485

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN  I   + L       ++   +   G+ PD  +Y ++I GLC+    K+A  
Sbjct: 486 QPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKD 545

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
             ++M+  GL P  +T+  L     +  +L   R+L
Sbjct: 546 LKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKL 581



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 142/311 (45%), Gaps = 27/311 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG--VEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           Y +L+  + K  R D A   L EM  +G     N VTYNV+++ + R   L  + +   +
Sbjct: 246 YNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDS 305

Query: 60  IRNAEKVFD------------------------EMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           +R ++K                           EM   GI P + +++ ++H   ++ Q 
Sbjct: 306 MRLSKKASSFTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQV 365

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + +  K   M+  G+ P + TY+S++   C  G +++A  LLG++ R G+ P+  TYN  
Sbjct: 366 EAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTL 425

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y        A +L  +M E G C P++ +Y IL+     +  + M RE ++++   G
Sbjct: 426 IDGYCRLGGLEEARRLKEEMVEQG-CFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKG 484

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           L PD  +Y   I          +A Q    M+ KG+ P  VT+  +  GL ++  L+  +
Sbjct: 485 LQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAK 544

Query: 276 RLKKKLDEESI 286
            LK K+  + +
Sbjct: 545 DLKMKMVSDGL 555



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 122/260 (46%), Gaps = 16/260 (6%)

Query: 28  RGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 87
            GV P+V   N +L  V R A+     R++    +   V+ EM    IEP + +++ +L 
Sbjct: 202 HGVAPDVRDCNCVLR-VLRDAA-----RWD----DVRAVYREMLQLEIEPTIVTYNTLLD 251

Query: 88  VY---SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
            +    R  +  + L ++   +  G      TY+ V+  L   G +E+A +L+  M R  
Sbjct: 252 SFLKEGRKDEASMLLKEME-TQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSM-RLS 309

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
              S+ TYN        R        L  +M+ +G+ +P + +YN +I   +   +++  
Sbjct: 310 KKASSFTYNPLITALLERGFVQKVEALQMEMENEGI-MPTLVTYNAIIHGLLKSEQVEAA 368

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           +  + +++  GL PDL +Y  +++G C+    KEA     ++   GL P  +T+ TL  G
Sbjct: 369 QLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDG 428

Query: 265 LIQSDMLRTWRRLKKKLDEE 284
             +   L   RRLK+++ E+
Sbjct: 429 YCRLGGLEEARRLKEEMVEQ 448


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 129/276 (46%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I   C+  +   A + L EM    ++PN++TY  L+ G+               ++
Sbjct: 610 YNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAG----------VVK 659

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ + +EM   G  P   +   VL   S + +P + L+    M   G+   +  Y+++V
Sbjct: 660 KAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLV 719

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G   +A  +L EM+  G+ P   T+N     +      + A  +Y QM   GL 
Sbjct: 720 HVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLS 779

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ ++N L+G   +  R+     + +D+K  GL P+  +Y +L+ G  +K    EA +
Sbjct: 780 -PNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALR 838

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            + EM+ KG +P+  T+ +L     ++ M+   + L
Sbjct: 839 LYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKEL 874



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 139/305 (45%), Gaps = 26/305 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC--RR------------ 47
           YT+L+ G  +   +  A+  L EM   G  P  +T+  +L      RR            
Sbjct: 645 YTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMM 704

Query: 48  -ASLHPSERFEKTI----------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            A LH       T+          RNA  V DEM  RGI PD  +F+ ++  + ++    
Sbjct: 705 GAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLD 764

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      M  +G+ P +AT+++++  L S GRI +A+ +L +M + G+ P+  TY+   
Sbjct: 765 NAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILV 824

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y  + +   A++LY +M   G  +P   +YN L+  F     M+  +E+++++K  G+
Sbjct: 825 TGYAKKSNKVEALRLYCEMVSKGF-IPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGV 883

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
                +Y +L++G  + +   E      +M E G  P K T  ++ R   +  M    RR
Sbjct: 884 LHTSSTYDILLNGWSKLRNGIEVRILLKDMKELGFKPSKGTISSMSRAFSRPGMTGEARR 943

Query: 277 LKKKL 281
           L K L
Sbjct: 944 LLKTL 948



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 123/264 (46%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G  K   +  A +   E++E+ + P+ V YNV +N +C       ++ F K   
Sbjct: 540 YTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLK--- 596

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                  EMR  G+EPD  +++ ++    R  +   +L  L  MK   I P + TY+++V
Sbjct: 597 -------EMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLV 649

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G ++ A+ LL EM   G  P++ T+    +   G +  +  ++++  M   GL 
Sbjct: 650 VGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLH 709

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++  YN L+ +            + +++   G+ PD  ++  LI G C+      A  
Sbjct: 710 A-DITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFA 768

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            + +M+ +GL P   TF TL  GL
Sbjct: 769 IYAQMLHQGLSPNIATFNTLLGGL 792



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 128/276 (46%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+   C+   ID AE+ L +M E+ V PNVVT++ ++NG+ +R  L  +  + + ++
Sbjct: 400 YTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMK 459

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           ++          GI P+V ++  ++  + +    + +LD    M  +G+        S+V
Sbjct: 460 DS----------GIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLV 509

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G IE AE L  +M   G+      Y           +   A K+ +++ E  L 
Sbjct: 510 NGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLS 569

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+   YN+ I     L +    +    +++ +GL PD  +Y  +I   C + K  +A +
Sbjct: 570 -PDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALK 628

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
              EM    + P  +T+ TL  GL+++ +++  + L
Sbjct: 629 LLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFL 664



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 134/299 (44%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G+CK+  +  A   +  M  +GV  +VV YN L+ G       H  +       
Sbjct: 190 WNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGF-----FHSGDA-----D 239

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V + M+  G+EP+V +++ ++  Y +      +      M   G+ P V T S++V
Sbjct: 240 AALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALV 299

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+  +A  L  EM + GV P+  TY          +  + ++ L  +M   G+ 
Sbjct: 300 DGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGV- 358

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V ++  Y  L+       +++  +++    +   + P+  +YT+L+   C       A Q
Sbjct: 359 VMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQ 418

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI-----TFGSEFQNY 295
             ++M EK ++P  VTF ++  GL++   L       +K+ +  I     T+G+    +
Sbjct: 419 VLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGF 477



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 141/311 (45%), Gaps = 26/311 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           YT+LI  +CK   +D A      M+  GV P+VVT + L++G+CR               
Sbjct: 260 YTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMD 319

Query: 47  RASLHPS--------ERFEKTIRNAEKV--FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +  + P+        +   K  R +E +    EM  RG+  D+  ++ ++    +  + +
Sbjct: 320 KIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIE 379

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + D L   +   I P   TY+ +V   C  G I+ AE++L +M    V P+  T++   
Sbjct: 380 EAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSII 439

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                R     A    R+MK+ G+  PN+ +Y  LI  F      +   +++ D+   G+
Sbjct: 440 NGLVKRGCLGKAADYMRKMKDSGIA-PNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGV 498

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
             +      L++GL +    + A   F +M E+GLL   V + TL  GL ++  +    +
Sbjct: 499 EANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFK 558

Query: 277 LKKKLDEESIT 287
           + ++L E++++
Sbjct: 559 VGQELMEKNLS 569



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 129/286 (45%), Gaps = 11/286 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT+L+    K  +I+ A+  L       + PN VTY VL++  CR  +          I
Sbjct: 364 MYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGN----------I 413

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE+V  +M  + + P+V +FS +++   +      + D +  MK+ GI P V TY ++
Sbjct: 414 DGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTL 473

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +         E A ++  +M+  GV  +    +      R   +  GA  L++ M E GL
Sbjct: 474 IDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGL 533

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            + +++   ++ G+F   N M    ++  ++    L PD   Y + I+ LC   K+ EA 
Sbjct: 534 LLDHVNYTTLMDGLFKTGN-MPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAK 592

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            +  EM   GL P + T+ T+     +        +L K++   SI
Sbjct: 593 SFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSI 638



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 120/272 (44%), Gaps = 11/272 (4%)

Query: 17  MAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIE 76
           +A   L EM +RGV  + VT +  L G+CR   +  +    + +         +R RGI+
Sbjct: 133 LAPPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAALAEML---------VRGRGID 183

Query: 77  P-DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
             DV  ++ ++  Y +      +L  +  M  +G+   V  Y+S+V      G  + A E
Sbjct: 184 GLDVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALE 243

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           ++  M  +GV P+  TY     EY   K  + A  LY  M   G+ +P++ + + L+   
Sbjct: 244 VVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGV-LPDVVTLSALVDGL 302

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
               +      ++ ++   G+ P+  +Y  LI  L + ++  E+     EM+ +G++   
Sbjct: 303 CRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDL 362

Query: 256 VTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           V +  L   L +   +   + + +    ++IT
Sbjct: 363 VMYTALMDRLGKEGKIEEAKDVLRHAQSDNIT 394



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 112/278 (40%), Gaps = 44/278 (15%)

Query: 28  RGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 87
           R V  + +T N ++   C   SL P+    ++    +          +  D  S++I L 
Sbjct: 70  RPVPGDTLTLNSIILSYCSLRSLRPALSLLRSSSGPQSQSQ------VAADTVSYNIFLA 123

Query: 88  VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN---- 143
             S     +L+   L+ M ++G+     T S+ +  LC  G + +A  L   +VR     
Sbjct: 124 ALSEQGHGRLAPPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAALAEMLVRGRGID 183

Query: 144 ---------------------------------GVCPSAETYNCFFKEYRGRKDANGAMK 170
                                            GV      YN     +    DA+ A++
Sbjct: 184 GLDVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALE 243

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           +  +MK DG+  PN+ +Y  LIG +     MD    ++  +  SG+ PD+ + + L+ GL
Sbjct: 244 VVERMKADGV-EPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGL 302

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           C   ++ EA   F EM + G+ P  VT+ TL   L ++
Sbjct: 303 CRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKA 340


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 143/281 (50%), Gaps = 11/281 (3%)

Query: 1    MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
            +Y  LI G+ +++ +++A     EM   G  P+  TYN L++   +   ++  E F+   
Sbjct: 792  VYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKIN--ELFD--- 846

Query: 61   RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                 ++DEM  RG +P+  ++++V+    ++++   ++D    +      PT  T+  +
Sbjct: 847  -----LYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPL 901

Query: 121  VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
            +  L   GR++DA E+   MV  G  P++  YN     Y      + A + +++M ++G+
Sbjct: 902  IDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGI 961

Query: 181  CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              P++ SY IL+ +     R+D     +  +K +GL PDL +Y ++I+GL   Q+ +EA 
Sbjct: 962  -RPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEAL 1020

Query: 241  QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
              F EM  +G++P   T+ +L   L    M+    ++ ++L
Sbjct: 1021 SLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEEL 1061



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 141/293 (48%), Gaps = 28/293 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------R 47
           YT  I    +  +ID A R +  M + G  P+VVTY VL++ +C               +
Sbjct: 267 YTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMK 326

Query: 48  ASLHPSERFEKT-----------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +S H  ++               +   EK++ EM   G  PDV +F+I+++   +A +  
Sbjct: 327 SSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRIN 386

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + D L+ M+++G+ P + TY++++  L    R++DA +L   M   GV P+A TY    
Sbjct: 387 EAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTY-ILL 445

Query: 157 KEYRGRKDANG-AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            +Y G+    G A++ + +MK  G+  PN+ + N  +     + R+   + ++N++K SG
Sbjct: 446 IDYHGKSGHPGKALETFEKMKARGIA-PNIVACNASLYSLAEMGRLGEAKAMFNELKSSG 504

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           L PD  +Y M++    +  +  EA +   EM +    P  +   +L   L ++
Sbjct: 505 LAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKA 557



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 141/325 (43%), Gaps = 48/325 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T L+   CK  RI+ A   L  M ++GV PN+ TYN L++G+ R   L           
Sbjct: 372 FTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLD---------- 421

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +F  M   G+EP   ++ +++  + ++  P  +L+    MK +GI P +   ++ +
Sbjct: 422 DALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASL 481

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK----- 176
             L   GR+ +A+ +  E+  +G+ P + TYN   K Y      + A+KL  +M      
Sbjct: 482 YSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCE 541

Query: 177 -----------------------------EDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
                                        E+    P + +YNIL+       ++    ++
Sbjct: 542 PDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQL 601

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           +  + G G  P+  ++  L+  LC+  +   A + F +M      P  +TF T+  G I+
Sbjct: 602 FESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIK 661

Query: 268 SDMLRT----WRRLKKKLDEESITF 288
            + ++     + ++KK L  + +T 
Sbjct: 662 QNQIKNAIWLFHQMKKLLRPDHVTL 686



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 129/285 (45%), Gaps = 26/285 (9%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHP--------- 52
            Y SLI    K  +I+       EM+ RG +PN +TYN++++ + +   L           
Sbjct: 828  YNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLV 887

Query: 53   SERFEKT----------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            S  F  T                + +A ++FD M   G  P+   ++I+++ Y +     
Sbjct: 888  SGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVD 947

Query: 97   LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
             + +    M ++GI P + +Y+ +V  LC  GR++DA     ++ + G+ P    YN   
Sbjct: 948  TACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMI 1007

Query: 157  KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                  +    A+ L+ +M+  G+ VP++++YN LI     +  ++   +I+ +++  GL
Sbjct: 1008 NGLGRSQRTEEALSLFHEMQNRGI-VPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGL 1066

Query: 217  GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
             P++ +Y  LI G       + A   + +M+  G  P   TF  L
Sbjct: 1067 KPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 102/188 (54%), Gaps = 11/188 (5%)

Query: 1    MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
            +Y  L+ G+ K+  +D A  F   M++ G+ P++ +Y +L++ +C              +
Sbjct: 932  IYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILC----------IAGRV 981

Query: 61   RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             +A   F++++  G++PD+ +++++++   R+ + + +L   + M+ +GI P + TY+S+
Sbjct: 982  DDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSL 1041

Query: 121  VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
            +  L   G IE+A ++  E+   G+ P+  TYN   + Y    ++  A  +Y++M   G 
Sbjct: 1042 ILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGG- 1100

Query: 181  CVPNMHSY 188
            C PN  ++
Sbjct: 1101 CDPNTGTF 1108



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 122/262 (46%), Gaps = 21/262 (8%)

Query: 2   YTSLIY-----GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF 56
           Y  LI+     G+CK   +++  R    M+  G++P++ T++ L+    +R         
Sbjct: 197 YNGLIHFLLQSGFCK-EALEVYRR----MVSEGLKPSLKTFSALMVASGKR--------- 242

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
            + I+    + +EM   G+ P++ +++I + V  R  +   +   +  M + G  P V T
Sbjct: 243 -RNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVT 301

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+ ++  LC+  +++DA  L  +M  +   P   TY     ++      +   K++ +M+
Sbjct: 302 YTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEME 361

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
            DG   P++ ++ IL+       R++   ++ + ++  G+ P+L +Y  LI GL    + 
Sbjct: 362 ADGYA-PDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRL 420

Query: 237 KEACQYFVEMIEKGLLPQKVTF 258
            +A   F  M   G+ P   T+
Sbjct: 421 DDALDLFSNMESLGVEPTAYTY 442



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 7/210 (3%)

Query: 55  RFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV---LHVYSRAHQPQLSLDKLNFMKEKGIC 111
           R  + + +   VFD M+ + I  +V ++ I+   L +     Q   +L+K   M+E G  
Sbjct: 135 RVHRRVEDMAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEK---MREAGFV 191

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
               +Y+ ++  L   G  ++A E+   MV  G+ PS +T++        R++    M L
Sbjct: 192 LNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGL 251

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
             +M+  GL  PN+++Y I I +     ++D    I   +   G GPD+ +YT+LI  LC
Sbjct: 252 LEEMESMGL-RPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALC 310

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
             +K  +A   F +M      P KVT+ TL
Sbjct: 311 TARKLDDAMCLFTKMKSSSHKPDKVTYVTL 340



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 8/221 (3%)

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA----TYSSVVKC 123
           +E+ V G     +S   VL V      P   +  L + K  G  P V     T + +++ 
Sbjct: 77  EELVVNGKPRKGSSSDEVLGVLHSISDP---IHALFYFKSVGELPNVVHTTETCNHMLEI 133

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           L    R+ED   +   M R  +  + +TY   FK    R     A     +M+E G  V 
Sbjct: 134 LRVHRRVEDMAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGF-VL 192

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N +SYN LI   +         E++  +   GL P L +++ L+    +++  K      
Sbjct: 193 NAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLL 252

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            EM   GL P   T+    R L +   +    R+ K++D++
Sbjct: 253 EEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDD 293



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 10/197 (5%)

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           +L V+ R        D    M+ + I   V TY  + K L   G +  A   L +M   G
Sbjct: 133 ILRVHRRVEDMAFVFD---LMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAG 189

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
              +A +YN              A+++YR+M  +GL  P++ +++ L+        +  V
Sbjct: 190 FVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGL-KPSLKTFSALMVASGKRRNIKTV 248

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             +  +++  GL P++ +YT+ I  L    K  EA +    M + G  P  VT+  L   
Sbjct: 249 MGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLI-- 306

Query: 265 LIQSDMLRTWRRLKKKL 281
               D L T R+L   +
Sbjct: 307 ----DALCTARKLDDAM 319


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 135/280 (48%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK        R L ++    V+P+VV YN ++N +C+           K + 
Sbjct: 165 YGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKN----------KLLG 214

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  V+ EM V+GI PDV +++ ++H +      + +   LN MK K I P V T++ ++
Sbjct: 215 DACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILI 274

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G++++A+ LL  M++  + P   TYN     Y    +   A  ++  M + G+ 
Sbjct: 275 DALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGV- 333

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  Y  +I        +D    ++ ++K   + PD+ +Y  LI GLC+    + A  
Sbjct: 334 TPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIA 393

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
               M E+G+ P   ++  L  GL +S  L   + + ++L
Sbjct: 394 LCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRL 433



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 135/268 (50%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI+G+C +  +  A   L EM  + + PNV T+N+L++ + +          E  ++
Sbjct: 235 YTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSK----------EGKMK 284

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +   M    I+PDV +++ ++  Y    + + +      M ++G+ P V  Y++++
Sbjct: 285 EAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMI 344

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    +++A  L  EM    + P   TYN              A+ L ++MKE G+ 
Sbjct: 345 NGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGI- 403

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+++SY IL+       R++  +EI+  +   G   ++ +YT+LI+ LC+   + EA  
Sbjct: 404 QPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALD 463

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              +M +KG +P  VTF+ + R L + D
Sbjct: 464 LKSKMEDKGCMPDAVTFDIIIRALFEKD 491



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 137/308 (44%), Gaps = 28/308 (9%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI---- 60
           LI  +C    I +A      +++RG  PN +T N L+ G+C R  +  +  F   +    
Sbjct: 98  LINCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQG 157

Query: 61  ---------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
                                +   ++  ++    ++PDV  ++ +++   +      + 
Sbjct: 158 FQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDAC 217

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           D  + M  KGI P V TY++++   C  G +++A  LL EM    + P+  T+N      
Sbjct: 218 DVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDAL 277

Query: 160 RGRKDANGAMKLYRQMKEDGLCV-PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218
                   A  L   M +   C+ P++ +YN LI  +  ++ +   + ++  +   G+ P
Sbjct: 278 SKEGKMKEAKILLAVMMKA--CIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTP 335

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
           D+  YT +I+GLC+ +   EA   F EM  K ++P  VT+ +L  GL ++  L     L 
Sbjct: 336 DVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALC 395

Query: 279 KKLDEESI 286
           K++ E+ I
Sbjct: 396 KRMKEQGI 403



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 117/253 (46%), Gaps = 46/253 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G+  ++ +  A+     M +RGV P+V  Y  ++NG+C+           K + 
Sbjct: 305 YNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCK----------TKMVD 354

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F+EM+ + + PD+ +++ ++    + H  + ++     MKE+GI P V +Y+ ++
Sbjct: 355 EAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILL 414

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+EDA+E+   ++  G       Y+                            
Sbjct: 415 DGLCKSGRLEDAKEIFQRLLAKG-------YHL--------------------------- 440

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+H+Y +LI         D   ++ + ++  G  PD  ++ ++I  L EK +  +A +
Sbjct: 441 --NVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEK 498

Query: 242 YFVEMIEKGLLPQ 254
              EMI +GLL +
Sbjct: 499 ILREMIARGLLKE 511



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 3/204 (1%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLH-VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           A   F+ M +    P    F+ +L  + +  H P + +      +  GI P + T S ++
Sbjct: 41  AVASFNLMLLMRPPPPTFHFNNILSSLVNNKHYPTV-ISLFKQFEPNGITPDLCTLSILI 99

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            C C    I  A  +   +++ G  P+A T N   K    R +   A+  + Q+   G  
Sbjct: 100 NCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQ 159

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +  + SY  LI           V  +   ++G  + PD+  Y  +I+ LC+ +   +AC 
Sbjct: 160 LDQV-SYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACD 218

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            + EMI KG+ P  VT+ TL  G 
Sbjct: 219 VYSEMIVKGISPDVVTYTTLIHGF 242



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 67/140 (47%), Gaps = 1/140 (0%)

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P    +N         K     + L++Q + +G+  P++ + +ILI  F     + +   
Sbjct: 55  PPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGI-TPDLCTLSILINCFCHQAHITLAFS 113

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++ ++   G  P+  +   LI GLC + + K+A  +  +++ +G    +V++ TL  GL 
Sbjct: 114 VFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLC 173

Query: 267 QSDMLRTWRRLKKKLDEESI 286
           ++   +   RL +KL+  S+
Sbjct: 174 KTGETKAVARLLRKLEGHSV 193


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 137/278 (49%), Gaps = 14/278 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK+     A   L  +  + V+PNVV Y+ +++G+C+          +K + 
Sbjct: 195 YGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCK----------DKHVN 244

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  ++ EM  +GI P+V ++S ++  +    + + ++D  N M  + I P V T++ +V
Sbjct: 245 DAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILV 304

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+I  A +L+ EM   G  P+  TY+            + A+ L  ++K+ G+ 
Sbjct: 305 DVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGI- 363

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PNMH+Y ILI       +++  R I+ D+   G    + +Y ++ +G C+K  + EA  
Sbjct: 364 RPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEASA 423

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLI---QSDMLRTWRR 276
              +M E G +P   T+E +   L    ++DM     R
Sbjct: 424 LLSKMEENGCIPDAKTYELIKLSLFKKGENDMAEKLHR 461



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 140/305 (45%), Gaps = 26/305 (8%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C++  I  A     ++++ G  PN +T+  L+ G+C +  +H +  F   +    
Sbjct: 128 LINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVALG 187

Query: 65  KVFDEM-----------------------RVRG--IEPDVTSFSIVLHVYSRAHQPQLSL 99
             F+++                       RV G  ++P+V  +S ++    +      + 
Sbjct: 188 FQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAF 247

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           D  + M  KGI P V TYS+++    + G+++DA +L  +M+   + P   T+N     +
Sbjct: 248 DLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDVF 307

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
                 + A+KL  +M + G   PN+ +Y+ ++      +R+D    +   +K  G+ P+
Sbjct: 308 CKSGKISYALKLVDEMHDRGQ-PPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPN 366

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
           + +YT+LI GLC   K ++A   F +++ KG     VT+  ++ G  +  +      L  
Sbjct: 367 MHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEASALLS 426

Query: 280 KLDEE 284
           K++E 
Sbjct: 427 KMEEN 431



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 115/259 (44%), Gaps = 11/259 (4%)

Query: 28  RGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 87
           RG++PN+V  N+L+N  C+             I  A  VF ++   G  P+  +F+ ++ 
Sbjct: 116 RGIKPNLVNCNILINCFCQLG----------LIPFAFSVFAKILKMGYNPNTITFTTLIK 165

Query: 88  VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
                 Q   +L+  + +   G      +Y +++  LC  G    A +LL  +    V P
Sbjct: 166 GLCLKGQIHQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQP 225

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
           +   Y+         K  N A  LY +M   G+  PN+ +Y+ LI  F  + ++    ++
Sbjct: 226 NVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGIS-PNVVTYSALISGFFTVGKLKDAVDL 284

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           +N +    + PD+ ++ +L+   C+  K   A +   EM ++G  P  VT+ ++   L +
Sbjct: 285 FNKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCK 344

Query: 268 SDMLRTWRRLKKKLDEESI 286
           +  +     L  KL ++ I
Sbjct: 345 THRVDKAVALLTKLKDQGI 363



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 99/234 (42%), Gaps = 60/234 (25%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKT 59
           MY+++I G CK   ++ A     EM+ +G+ PNVVTY+ L++G      L  + + F K 
Sbjct: 229 MYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKM 288

Query: 60  IRN------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           I                          A K+ DEM  RG  P++ ++S +L    + H+ 
Sbjct: 289 ISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRV 348

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA---------------------- 133
             ++  L  +K++GI P + TY+ ++  LC+ G++EDA                      
Sbjct: 349 DKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVM 408

Query: 134 -------------EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
                          LL +M  NG  P A+TY         + + + A KL+R+
Sbjct: 409 FYGFCKKGLFDEASALLSKMEENGCIPDAKTYELIKLSLFKKGENDMAEKLHRE 462



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 5/229 (2%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLH--VYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           + +A  +F+ +  +   P    F+ +L   V S+ +   L L K   M+ +GI P +   
Sbjct: 68  VDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLYLSKK--MEFRGIKPNLVNC 125

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + ++ C C  G I  A  +  ++++ G  P+  T+    K    +   + A+  + ++  
Sbjct: 126 NILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVA 185

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G    N  SY  LI     +       ++   V G  + P++  Y+ +I G+C+ +   
Sbjct: 186 LGFQF-NQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVN 244

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +A   + EM+ KG+ P  VT+  L  G      L+    L  K+  E+I
Sbjct: 245 DAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENI 293



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 1/166 (0%)

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           YSS      S   ++DA  L   ++R    P A  +N         K  +  + L ++M+
Sbjct: 55  YSSTSTTFHSNNDVDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLYLSKKME 114

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G+  PN+ + NILI  F  L  +     ++  +   G  P+  ++T LI GLC K + 
Sbjct: 115 FRGI-KPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQI 173

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
            +A  +  +++  G    ++++ TL  GL +    R    L +++D
Sbjct: 174 HQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVD 219


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 128/263 (48%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G  K  R+D A  FL EM+E G++PN  TY   ++G    +    ++++ K   
Sbjct: 490 YNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVK--- 546

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                  EMR  G+ P+    + +++ Y +  +   +      M ++GI     TY+ ++
Sbjct: 547 -------EMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLM 599

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L    +++DAEE+  EM   G+ P   +Y      +    +   A  ++ +M E+GL 
Sbjct: 600 NGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGL- 658

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+  YN+L+G F     ++  +E+ +++   GL P+  +Y  +I G C+     EA +
Sbjct: 659 TPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFR 718

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F EM  KGL+P    + TL  G
Sbjct: 719 LFDEMKLKGLVPDSFVYTTLVDG 741



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 143/320 (44%), Gaps = 49/320 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G+C+   +      L EM +R +  +  TY  ++ G+C    L           
Sbjct: 385 YASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLD---------- 434

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  EM   G  P+V  ++ ++  + +  +   ++  L  MKE+GI P +  Y+S++
Sbjct: 435 GAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLI 494

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L    R+++A   L EMV NG+ P+A TY  F   Y    +   A K  ++M+E G+ 
Sbjct: 495 IGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGV- 553

Query: 182 VPN-----------------------------------MHSYNILIGMFMALNRMDMVRE 206
           +PN                                     +Y +L+      +++D   E
Sbjct: 554 LPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEE 613

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           I+ +++G G+ PD+ SY +LI+G  +    ++A   F EM+E+GL P  + +  L  G  
Sbjct: 614 IFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFC 673

Query: 267 QSDMLRTWRRLKKKLDEESI 286
           +S  +   + L   LDE S+
Sbjct: 674 RSGEIEKAKEL---LDEMSV 690



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 135/291 (46%), Gaps = 30/291 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  LI G CKI R++ A+  L EM   GV  +  TY++L++G+ +  +   ++       
Sbjct: 280 YDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMV 339

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  +  A+ +FD M   G+ P   +++ ++  Y R    +
Sbjct: 340 SHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVR 399

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
              + L  MK++ I  +  TY +VVK +CS G ++ A  ++ EM+ +G  P+   Y    
Sbjct: 400 QGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLI 459

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           K +        AM++ ++MKE G+  P++  YN LI       RMD  R    ++  +GL
Sbjct: 460 KTFLQNSRFGDAMRVLKEMKEQGIA-PDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGL 518

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            P+  +Y   I G  E  ++  A +Y  EM E G+LP KV    L  GLI 
Sbjct: 519 KPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKV----LCTGLIN 565



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 130/277 (46%), Gaps = 11/277 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+LI  + + +R   A R L EM E+G+ P++  YN L+ G+ +   +  +  F    
Sbjct: 454 IYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSF---- 509

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                   EM   G++P+  ++   +  Y  A +   +   +  M+E G+ P     + +
Sbjct: 510 ------LVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGL 563

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G++ +A      MV  G+   A+TY             + A +++R+M+  G+
Sbjct: 564 INEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGI 623

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ SY +LI  F  L  M     I++++   GL P++  Y ML+ G C   + ++A 
Sbjct: 624 A-PDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAK 682

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           +   EM  KGL P  VT+ T+  G  +S  L    RL
Sbjct: 683 ELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRL 719



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 132/299 (44%), Gaps = 47/299 (15%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T LI  +CK  ++  A      M+++G+  +  TY VL+NG+ +             + +
Sbjct: 561 TGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKN----------DKVDD 610

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           AE++F EMR +GI PDV S+ ++++ +S+    Q +    + M E+G+ P V  Y+ ++ 
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL-- 180
             C  G IE A+ELL EM   G+ P+A TY      Y    D   A +L+ +MK  GL  
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVP 730

Query: 181 -------------------------------CVPNMHSYNILIGMFMALNRMDMVREIWN 209
                                          C  +   +N LI       + ++  E+ N
Sbjct: 731 DSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLN 790

Query: 210 DVKGSGLG----PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            +          P+  +Y ++I  LC++   + A + F +M    L+P  +T+ +L  G
Sbjct: 791 RLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNG 849



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 122/272 (44%), Gaps = 14/272 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+ K+  +  A     EM+E G+ PNV+ YN+LL G CR             I 
Sbjct: 630 YGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE----------IE 679

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++ DEM V+G+ P+  ++  ++  Y ++     +    + MK KG+ P    Y+++V
Sbjct: 680 KAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLV 739

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK-EYRGRKDANGAMKLYRQMKE--D 178
              C    +E A  + G   + G   S   +N      ++  K       L R M    D
Sbjct: 740 DGCCRLNDVERAITIFGTN-KKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFD 798

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
               PN  +YNI+I        ++  +E+++ ++ + L P + +YT L++G  +  +  E
Sbjct: 799 RFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAE 858

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
               F E I  G+ P  + +  +    ++  M
Sbjct: 859 MFPVFDEAIAAGIEPDHIMYSVIINAFLKEGM 890



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 125/294 (42%), Gaps = 26/294 (8%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI-------------- 60
           +D A +    MI +G+ P   TY+VL++G+C+   L  ++     +              
Sbjct: 258 VDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSL 317

Query: 61  --------RNAEK---VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG 109
                   RNA+    +  EM   GI      +   + V S+    + +    + M   G
Sbjct: 318 LIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASG 377

Query: 110 ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAM 169
           + P    Y+S+++  C    +    ELL EM +  +  S  TY    K      D +GA 
Sbjct: 378 LIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAY 437

Query: 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
            + ++M   G C PN+  Y  LI  F+  +R      +  ++K  G+ PD+  Y  LI G
Sbjct: 438 NIVKEMIASG-CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIG 496

Query: 230 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           L + ++  EA  + VEM+E GL P   T+     G I++    +  +  K++ E
Sbjct: 497 LSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 113/261 (43%), Gaps = 35/261 (13%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           NR+D+       M+ER V  +V TY++L+   CR  ++   +     +   EK F     
Sbjct: 200 NRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGK---DVLFKTEKEF----- 251

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE----KGICPTVATYSSVVKCLCSCG 128
                                   L++D    +KE    KG+ P   TY  ++  LC   
Sbjct: 252 --------------------RTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIK 291

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV-PNMHS 187
           R+EDA+ LL EM   GV     TY+         ++A+ A  L  +M   G+ + P M  
Sbjct: 292 RLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYM-- 349

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           Y+  I +      M+  + +++ +  SGL P   +Y  LI G C ++  ++  +  VEM 
Sbjct: 350 YDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMK 409

Query: 248 EKGLLPQKVTFETLYRGLIQS 268
           ++ ++    T+ T+ +G+  S
Sbjct: 410 KRNIVISPYTYGTVVKGMCSS 430



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 105/262 (40%), Gaps = 32/262 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           Y ++I G+CK   +  A R   EM  +G+ P+   Y  L++G CR               
Sbjct: 700 YCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNK 759

Query: 47  ---RASLHPSE-------RFEKTIRNAE---KVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93
               +S  P         +F KT    E   ++ D    R  +P+  +++I++    +  
Sbjct: 760 KGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEG 819

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY- 152
             + + +  + M+   + PTV TY+S++      GR  +   +  E +  G+ P    Y 
Sbjct: 820 NLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYS 879

Query: 153 ---NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
              N F KE    K      +++ +   D  C  ++ +   L+  F  +  M++  ++  
Sbjct: 880 VIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVME 939

Query: 210 DVKGSGLGPDLDSYTMLIHGLC 231
           ++      PD  +   LI+  C
Sbjct: 940 NMVRLQYIPDSATVIELINESC 961


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 139/292 (47%), Gaps = 23/292 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK +++  AE +L +M+  GVEPN  TYN ++NG C+   +          +
Sbjct: 289 YNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMM----------Q 338

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA+K+  +   +G  PD  ++S +++          ++       EKG   ++  Y+++V
Sbjct: 339 NADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLV 398

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK---EYRGRKDANGAMKLYRQMKED 178
           K L   G +  A +L+ +M+ +G  P   TYN       +     DANG +        D
Sbjct: 399 KGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILN-------D 451

Query: 179 GL---CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            +   C+P++ ++N LI  +     MD   EI + +   G+ PD+ +Y  L++GLC+ +K
Sbjct: 452 AIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARK 511

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
                  F  M+EKG  P  +T+  L     +   +     L K++    +T
Sbjct: 512 LDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLT 563



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 128/282 (45%), Gaps = 11/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T  +  +C   R   A R L  M  +G E N V+Y  +++G  +          E    
Sbjct: 149 HTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYK----------ENCQI 198

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +FDEM  +GI PD+ +F+ ++HV  +    Q S    + + ++G+CP + T++  +
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFI 258

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  G I++A  LL  +V  G+ P   +YN     +        A     +M   G+ 
Sbjct: 259 QGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGV- 317

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +YN +I  F     M    +I  D    G  PD  +Y+ LI+GLC       A  
Sbjct: 318 EPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMA 377

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            F E +EKG     + + TL +GL +  ++    +L K + E
Sbjct: 378 VFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMME 419



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 133/293 (45%), Gaps = 47/293 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +L+ G  K   +  A + + +M+E G  P++ TYN+++NG+C+   L          
Sbjct: 393 LYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCL---------- 442

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A  + ++   +G  PD+ +F+ ++  Y +      +++ L+ M   GI P V TY+++
Sbjct: 443 SDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTL 502

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   ++++  +    M+  G  P+  TYN   + +   +  + AM+L+++MK  GL
Sbjct: 503 LNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGL 562

Query: 181 CVPNMHS------------------------------------YNILIGMFMALNRMDMV 204
             P++ +                                    +NI+I  F     + M 
Sbjct: 563 -TPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMA 621

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
            ++++ + GS   PD  +Y ++I   C+      A  + +E I KGL+P   T
Sbjct: 622 EKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTT 674



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 124/277 (44%), Gaps = 11/277 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  ++  + +  ++  A      M     EP+V +YN ++N +                
Sbjct: 78  VYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYF---------- 127

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A KV+  M+  GI PDV + +I +  +    +P  +L  LN M  +G      +Y +V
Sbjct: 128 SQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAV 187

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +          +A  L  EM++ G+CP   T+N        + +   + KL+ ++ + G+
Sbjct: 188 ISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGV 247

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN+ ++NI I        +D    +   +   GL PD+ SY  LI G C+  K  EA 
Sbjct: 248 C-PNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAE 306

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            Y  +M+  G+ P + T+ T+  G  ++ M++   ++
Sbjct: 307 CYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKI 343



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 112/262 (42%), Gaps = 12/262 (4%)

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85
           E G +  + TY  ++     +  LH   E  E  +    K  D   + G+      +  +
Sbjct: 33  EDGFKHTLETYKCMI----EKLGLHGKFEAMEDVLAEMRKNVDSKMLEGV------YIGI 82

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           +  Y R  + Q +++    M      P+V +Y++++  L   G    A ++   M   G+
Sbjct: 83  MRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGI 142

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P   T+    K +        A++L   M   G C  N  SY  +I  F   N      
Sbjct: 143 YPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQG-CEFNAVSYCAVISGFYKENCQIEAY 201

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            +++++   G+ PD+ ++  LIH LC+K   +E+ + F +++++G+ P   TF    +GL
Sbjct: 202 HLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGL 261

Query: 266 IQSDMLRTWRRLKKKLDEESIT 287
            +   +    RL + +  E +T
Sbjct: 262 CRKGAIDEAARLLESIVSEGLT 283



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 28/182 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI  +CK  ++  A     EM  RG+ P++VT   L+ G+C    L  +     TI 
Sbjct: 534 YNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIE 593

Query: 62  N--------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                      AEK+F +M      PD  ++ +++  Y +    
Sbjct: 594 KEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNI 653

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
            L+   L     KG+ P+  T   V+ CLC   R+ +A  ++  MV+NG+ P  E  N  
Sbjct: 654 DLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVP--EEVNSI 711

Query: 156 FK 157
           F+
Sbjct: 712 FE 713


>gi|125540181|gb|EAY86576.1| hypothetical protein OsI_07956 [Oryza sativa Indica Group]
 gi|125582780|gb|EAZ23711.1| hypothetical protein OsJ_07414 [Oryza sativa Japonica Group]
 gi|215768726|dbj|BAH00955.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 500

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 132/261 (50%), Gaps = 18/261 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +   ++GWC I RID A   + EM  RG  P+V+TY  +L   C+          ++  R
Sbjct: 222 FNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVITYTTVLEAYCK----------QRNFR 271

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +V D M  +G  P+V ++++++   ++  + + +L   + MK  G  P    Y+S++
Sbjct: 272 RVYEVLDSMGSQGCHPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGCKPDTLFYNSLI 331

Query: 122 KCLCSCGRIEDAEELLG-EMVRNGVCPSAETYNCFFKE--YRGRKDANGAMKLYRQMKED 178
             L   G + +A ++   EM  NGV  +  TYN       Y GR D   A+ + ++M+  
Sbjct: 332 NLLGKSGHLFEASQVFRVEMPMNGVSHNLATYNTMISIFCYYGRDD--DALNVLKEMEAQ 389

Query: 179 GLCVPNMHSYNILIGMFMA-LNRMDMVREIWNDVKGS-GLGPDLDSYTMLIHGLCEKQKW 236
             C P++ SY  L+ +F++   + D VR + +++     LG DLD+YT+LIHGLC     
Sbjct: 390 S-CKPDIQSYRPLLRLFLSRRGQADTVRHLLSELTSKHNLGLDLDTYTLLIHGLCRVGDT 448

Query: 237 KEACQYFVEMIEKGLLPQKVT 257
             A Q F EM+   + P+  T
Sbjct: 449 VWAYQLFDEMVSSEIAPRSKT 469



 Score = 41.6 bits (96), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 31/166 (18%), Positives = 73/166 (43%), Gaps = 3/166 (1%)

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
           L+ M  +G+  TV T +  ++ L    R +D   L  ++   G+  + ET N        
Sbjct: 139 LSDMHGRGLV-TVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLDVLCK 197

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
            +    A +++  +       P+ +++NI +  + ++ R+D       ++K  G  P + 
Sbjct: 198 ERKIEVAREVFAVLSPH--IPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVI 255

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           +YT ++   C+++ ++   +    M  +G  P  +T+  +   L +
Sbjct: 256 TYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAK 301


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 120/260 (46%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+    K  R+  A  F   M+ERG+ PN+ TYN+L++   +   L           
Sbjct: 138 YGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLD---------- 187

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM+ RG +P V +++I+L     A +   +    + M   G  P   TYS++V
Sbjct: 188 MALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLV 247

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+E+A ++  EMV  GV      YN          + +   KL ++M   G  
Sbjct: 248 NGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFH 307

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  S+N ++      N+ D  RE++  +  SG  PDL SY +LI          +A Q
Sbjct: 308 -PDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQ 366

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              EM+E G +P+  T+ +L
Sbjct: 367 MLEEMVEAGFIPETKTYNSL 386



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 123/260 (47%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+  + K+ ++DMA     EM  RG +P+VVTYN+LL+ +C              + 
Sbjct: 173 YNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGR----------VG 222

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F +M   G  PD  ++S +++   ++ + + +      M ++G+   +  Y+S++
Sbjct: 223 AARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLL 282

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G ++   +L+ EM R G  P A ++N            + A +++ +M E G C
Sbjct: 283 ATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESG-C 341

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SYNILI  +         R++  ++  +G  P+  +Y  LIH L    +  EA  
Sbjct: 342 KPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFA 401

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              EM   G  P  VT+  L
Sbjct: 402 VLEEMETAGCRPDVVTYNRL 421



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 118/218 (54%), Gaps = 2/218 (0%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           AE V+ ++  +G + D  ++++++  + R+ Q   +++    MK KG  P   TY  +V 
Sbjct: 84  AELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVN 143

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            L   GR+++A      M+  G+ P+  TYN     +R     + A+ L+ +MK  G   
Sbjct: 144 ALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQ- 202

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ +YNIL+    +  R+   R++++ + G G  PD  +Y+ L++GL +  + +EA + 
Sbjct: 203 PSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKV 262

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQS-DMLRTWRRLKK 279
           F EM+++G+    V + +L   L ++ +M R W+ +K+
Sbjct: 263 FREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKE 300



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 116/263 (44%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++L+ G  K  R++ A +   EM++RGV  ++V YN LL  + +  ++           
Sbjct: 243 YSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMD---------- 292

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K+  EM  +G  PD  SF+ ++    +A++P  + +    M E G  P + +Y+ ++
Sbjct: 293 RVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILI 352

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G    A ++L EMV  G  P  +TYN            + A  +  +M+  G C
Sbjct: 353 DSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAG-C 411

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN L+ M            ++  +K  G+ PD  SY + I GL    +  EA  
Sbjct: 412 RPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALV 471

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F +M   G    K  +  L R 
Sbjct: 472 LFKDMKAVGCPVDKAMYRILIRA 494



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 123/268 (45%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI         + AE    +++++G + +   YNVL+    R   L           
Sbjct: 68  FTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLD---------- 117

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F EM+++G EPD  ++  +++   +A + Q +    + M E+G+ P + TY+ ++
Sbjct: 118 SAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLM 177

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G+++ A  L  EM R G  PS  TYN              A KL+ +M  DG C
Sbjct: 178 DAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDG-C 236

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ ++Y+ L+       R++   +++ ++   G+  DL +Y  L+  L +        +
Sbjct: 237 SPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWK 296

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              EM  KG  P   +F T+   L +++
Sbjct: 297 LMKEMSRKGFHPDAFSFNTIMDALGKAN 324



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 98/240 (40%), Gaps = 36/240 (15%)

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
           E +  EM   G      +   ++  Y R ++   + D  N  +     PTV  ++ ++  
Sbjct: 15  ETLLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDI 74

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK------- 176
           L + G  E AE +  ++V+ G       YN   + +      + AM+++R+MK       
Sbjct: 75  LVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPD 134

Query: 177 ----------------------------EDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
                                       E GL  PN+ +YN+L+  F  + ++DM   ++
Sbjct: 135 EYTYGFLVNALGKAGRVQEARSFFDAMLERGLT-PNIPTYNLLMDAFRKVGQLDMALGLF 193

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            ++K  G  P + +Y +L+  LC   +   A + F +M   G  P   T+ TL  GL +S
Sbjct: 194 AEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKS 253



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 75/187 (40%), Gaps = 41/187 (21%)

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMKEDGLC 181
            L S G ++  E LL EMV  G      T       Y RG K  + A  L+ Q  E   C
Sbjct: 4   VLASWGILDPLETLLKEMVAEGRPLRPNTLVKLITAYGRGNKSGD-AFDLFNQ-AESFAC 61

Query: 182 VPNMH-----------------------------------SYNILIGMFMALNRMDMVRE 206
            P +H                                   +YN+LI  F    ++D   E
Sbjct: 62  SPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAME 121

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL---YR 263
           ++ ++K  G  PD  +Y  L++ L +  + +EA  +F  M+E+GL P   T+  L   +R
Sbjct: 122 MFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFR 181

Query: 264 GLIQSDM 270
            + Q DM
Sbjct: 182 KVGQLDM 188


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++   CK  +  +A   L +M ER ++ + V Y+++++G+C+  SL           
Sbjct: 231 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLD---------- 280

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA  +F+EM ++GI  ++ +++I++  +  A +       L  M ++ I P V T+S ++
Sbjct: 281 NAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLI 340

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G++ +AEEL  EM+  G+ P   TY      +      + A ++   M   G C
Sbjct: 341 DSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG-C 399

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ ++NILI  +   NR+D   E++  +   G+  D  +Y  LI G CE  K   A +
Sbjct: 400 DPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKE 459

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F EM+ + + P  VT++ L  GL
Sbjct: 460 LFQEMVSRKVPPNIVTYKILLDGL 483



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 137/283 (48%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C   R D   + L +MI+R + PNVVT++VL++   +          E  +R
Sbjct: 301 YNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK----------EGKLR 350

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE++  EM  RGI PD  +++ ++  + + +    +   ++ M  KG  P + T++ ++
Sbjct: 351 EAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILI 410

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI+D  EL  +M   GV     TYN   + +      N A +L+++M    + 
Sbjct: 411 NGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKV- 469

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y IL+         +   EI+  ++ S +  D+  Y ++IHG+C   K  +A  
Sbjct: 470 PPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWD 529

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KG+ P   T+  +  GL +   L     L +K++E+
Sbjct: 530 LFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEED 572



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 151/301 (50%), Gaps = 20/301 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++LI G C   R+  A   +  M+E G +P+++T N L+NG+C    L   E       
Sbjct: 161 FSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLC----LSGKEA------ 210

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D+M   G +P+  ++  VL+V  ++ Q  L+++ L  M+E+ I      YS ++
Sbjct: 211 EAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIII 270

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDG 179
             LC  G +++A  L  EM   G+  +  TYN     +   GR D +GA KL R M +  
Sbjct: 271 DGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWD-DGA-KLLRDMIKRK 328

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  PN+ ++++LI  F+   ++    E+  ++   G+ PD  +YT LI G C++    +A
Sbjct: 329 I-NPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKA 387

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLK-KKLDEESITFGSEFQN 294
            Q    M+ KG  P   TF  L  G  ++    D L  +R++  + +  +++T+ +  Q 
Sbjct: 388 NQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQG 447

Query: 295 Y 295
           +
Sbjct: 448 F 448



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 10/181 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+C++ ++++A+    EM+ R V PN+VTY +LL+G+C       SE+      
Sbjct: 441 YNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGE---SEK------ 491

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F+++    +E D+  ++I++H    A +   + D    +  KG+ P V TY+ ++
Sbjct: 492 -ALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMI 550

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G + +AE L  +M  +G  P   TYN   + + G  DA  ++KL  ++K  G  
Sbjct: 551 GGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFS 610

Query: 182 V 182
           V
Sbjct: 611 V 611



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 135/300 (45%), Gaps = 18/300 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR-RASLHPSERFEKTI 60
           ++ L     K  + D+      +M  +G+  N+ T ++++N  CR R          K I
Sbjct: 91  FSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKII 150

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           +            G EP+  +FS +++      +   +L+ ++ M E G  P + T +++
Sbjct: 151 K-----------LGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTL 199

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  LC  G+  +A  L+ +MV  G  P+A TY               AM+L R+M+E  +
Sbjct: 200 VNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNI 259

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +  +  Y+I+I        +D    ++N+++  G+  ++ +Y +LI G C   +W +  
Sbjct: 260 KLDAV-KYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGA 318

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK-----LDEESITFGSEFQNY 295
           +   +MI++ + P  VTF  L    ++   LR    L K+     +  ++IT+ S    +
Sbjct: 319 KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 378



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 11/133 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  +I+G C  +++D A      +  +GV+P V TYN+++ G+C++  L          
Sbjct: 510 IYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLS--------- 560

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE +F +M   G  PD  +++I++  +        S+  +  +K  G     +T   V
Sbjct: 561 -EAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMV 619

Query: 121 VKCLCSCGRIEDA 133
           +  L S GR++ +
Sbjct: 620 IDML-SDGRLKKS 631


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 139/292 (47%), Gaps = 23/292 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK +++  AE +L +M+  GVEPN  TYN ++NG C+   +          +
Sbjct: 289 YNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMM----------Q 338

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA+K+  +   +G  PD  ++S +++          ++       EKG   ++  Y+++V
Sbjct: 339 NADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLV 398

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK---EYRGRKDANGAMKLYRQMKED 178
           K L   G +  A +L+ +M+ +G  P   TYN       +     DANG +        D
Sbjct: 399 KGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILN-------D 451

Query: 179 GL---CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            +   C+P++ ++N LI  +     MD   EI + +   G+ PD+ +Y  L++GLC+ +K
Sbjct: 452 AIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARK 511

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
                  F  M+EKG  P  +T+  L     +   +     L K++    +T
Sbjct: 512 LDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLT 563



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 128/282 (45%), Gaps = 11/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T  +  +C   R   A R L  M  +G E N V+Y  +++G  +          E    
Sbjct: 149 HTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYK----------ENCQI 198

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +FDEM  +GI PD+ +F+ ++HV  +    Q S    + + ++G+CP + T++  +
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFI 258

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  G I++A  LL  +V  G+ P   +YN     +        A     +M   G+ 
Sbjct: 259 QGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGV- 317

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +YN +I  F     M    +I  D    G  PD  +Y+ LI+GLC       A  
Sbjct: 318 EPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMA 377

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            F E +EKG     + + TL +GL +  ++    +L K + E
Sbjct: 378 VFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMME 419



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 133/293 (45%), Gaps = 47/293 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +L+ G  K   +  A + + +M+E G  P++ TYN+++NG+C+   L          
Sbjct: 393 LYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCL---------- 442

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A  + ++   +G  PD+ +F+ ++  Y +      +++ L+ M   GI P V TY+++
Sbjct: 443 SDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTL 502

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   ++++  +    M+  G  P+  TYN   + +   +  + AM+L+++MK  GL
Sbjct: 503 LNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGL 562

Query: 181 CVPNMHS------------------------------------YNILIGMFMALNRMDMV 204
             P++ +                                    +NI+I  F     + M 
Sbjct: 563 -TPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMA 621

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
            ++++ + GS   PD  +Y ++I   C+      A  + +E I KGL+P   T
Sbjct: 622 EKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTT 674



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 124/277 (44%), Gaps = 11/277 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  ++  + +  ++  A      M     EP+V +YN ++N +                
Sbjct: 78  VYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYF---------- 127

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A KV+  M+  GI PDV + +I +  +    +P  +L  LN M  +G      +Y +V
Sbjct: 128 SQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAV 187

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +          +A  L  EM++ G+CP   T+N        + +   + KL+ ++ + G+
Sbjct: 188 ISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGV 247

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN+ ++NI I        +D    +   +   GL PD+ SY  LI G C+  K  EA 
Sbjct: 248 C-PNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAE 306

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            Y  +M+  G+ P + T+ T+  G  ++ M++   ++
Sbjct: 307 CYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKI 343



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 112/262 (42%), Gaps = 12/262 (4%)

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85
           E G +  + TY  ++     +  LH   E  E  +    K  D   + G+      +  +
Sbjct: 33  EDGFKHTLETYKCMI----EKLGLHGKFEAMEDVLAEMRKNVDSKMLEGV------YIGI 82

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           +  Y R  + Q +++    M      P+V +Y++++  L   G    A ++   M   G+
Sbjct: 83  MRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGI 142

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P   T+    K +        A++L   M   G C  N  SY  +I  F   N      
Sbjct: 143 YPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQG-CEFNAVSYCAVISGFYKENCQIEAY 201

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            +++++   G+ PD+ ++  LIH LC+K   +E+ + F +++++G+ P   TF    +GL
Sbjct: 202 HLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGL 261

Query: 266 IQSDMLRTWRRLKKKLDEESIT 287
            +   +    RL + +  E +T
Sbjct: 262 CRKGAIDEAARLLESIVSEGLT 283



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 28/182 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI  +CK  ++  A     EM  RG+ P++VT   L+ G+C    L  +     TI 
Sbjct: 534 YNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIE 593

Query: 62  N--------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                      AEK+F +M      PD  ++ +++  Y +    
Sbjct: 594 KEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNI 653

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
            L+   L     KG+ P+  T   V+ CLC   R+ +A  ++  MV+NG+ P  E  N  
Sbjct: 654 DLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVP--EEVNSI 711

Query: 156 FK 157
           F+
Sbjct: 712 FE 713



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 10/112 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++  +I  +C+   + MAE+   +M      P+  TY V+++  C+  ++  +  F   +
Sbjct: 604 IFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTF--LL 661

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP 112
            N  K        G+ P  T+   VL+     H+   ++  +N M + GI P
Sbjct: 662 ENISK--------GLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVP 705


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 137/264 (51%), Gaps = 13/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L++G+C+  +++ A     EM++RGV+ ++V Y VL++G     SL   +R     +
Sbjct: 615 YTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDG-----SLKHKDR-----K 664

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +  EM  RG++PD   ++ ++   S+    + +    + M  +G  P   TY++V+
Sbjct: 665 LFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVI 724

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMKEDGL 180
             LC  G + +AE L  +M      P+  TY CF     +G  D   A++L+  + + GL
Sbjct: 725 NGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILK-GL 783

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            + N  +YN+LI  F    R++   E+   + G G+ PD  +YT +I+ LC +   K+A 
Sbjct: 784 -LANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAI 842

Query: 241 QYFVEMIEKGLLPQKVTFETLYRG 264
           + +  M EKG+ P +V + TL  G
Sbjct: 843 ELWNSMTEKGIRPDRVAYNTLIHG 866



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 137/264 (51%), Gaps = 13/264 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           +SL+ G  K  +I+ A   +  +++ GV PN+  YN L++ +C+    H           
Sbjct: 336 SSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFH----------E 385

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           AE +FD M   G+ P+  ++SI++ ++ R  +   +L  L  M + G+  +V  Y+S++ 
Sbjct: 386 AELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLIN 445

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C  G I  AE  + EM+   + P+  TY      Y  +   N A++LY +M   G+  
Sbjct: 446 GHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGI-A 504

Query: 183 PNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           P+++++  L+ G+F A    D V+ ++N++    + P+  +Y ++I G CE+    +A +
Sbjct: 505 PSIYTFTTLLSGLFRAGLIRDAVK-LFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFE 563

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
           +  EM EKG++P   ++  L  GL
Sbjct: 564 FLKEMTEKGIVPDTYSYRPLIHGL 587



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 147/319 (46%), Gaps = 48/319 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT +I   C++  +  A+  +  M   G + N+V YNVL++G+C++          + +
Sbjct: 229 IYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKK----------QKV 278

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +  ++  + ++PDV ++  +++   +  + ++ L+ ++ M      P+ A  SS+
Sbjct: 279 WEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSL 338

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMKEDG 179
           V+ L   G+IE+A  L+  +V  GV P+   YN       +GRK     + L+ +M + G
Sbjct: 339 VEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAEL-LFDRMGKIG 397

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG---------------------- 217
           L  PN  +Y+ILI MF    ++D       ++  +GL                       
Sbjct: 398 L-RPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAA 456

Query: 218 -------------PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
                        P + +YT L+ G C K K  +A + + EM  KG+ P   TF TL  G
Sbjct: 457 EGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSG 516

Query: 265 LIQSDMLRTWRRLKKKLDE 283
           L ++ ++R   +L  ++ E
Sbjct: 517 LFRAGLIRDAVKLFNEMAE 535



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 116/260 (44%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G CK   I  AE F+ EMI + +EP VVTY  L+ G C +            I 
Sbjct: 440 YNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGK----------IN 489

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +++ EM  +GI P + +F+ +L    RA   + ++   N M E  + P   TY+ ++
Sbjct: 490 KALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMI 549

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G +  A E L EM   G+ P   +Y            A+ A K++      G C
Sbjct: 550 EGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEA-KVFVDGLHKGNC 608

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N   Y  L+  F    +++    +  ++   G+  DL  Y +LI G  + +  K    
Sbjct: 609 ELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFG 668

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              EM ++GL P  V + ++
Sbjct: 669 LLKEMHDRGLKPDDVIYTSM 688



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 141/302 (46%), Gaps = 23/302 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+YG CK+   ++    + EM+     P+    + L+ G+ +R       + E+ + 
Sbjct: 300 YCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRG------KIEEALN 353

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA---HQPQLSLDKLNFMKEKGICPTVATYS 118
             ++V D     G+ P++  ++ ++    +    H+ +L  D+   M + G+ P   TYS
Sbjct: 354 LVKRVVD----FGVSPNLFVYNALIDSLCKGRKFHEAELLFDR---MGKIGLRPNDVTYS 406

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++   C  G+++ A   LGEMV  G+  S   YN     +    D + A     +M   
Sbjct: 407 ILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINK 466

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
            L  P + +Y  L+G + +  +++    +++++ G G+ P + ++T L+ GL      ++
Sbjct: 467 KL-EPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRD 525

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLI-QSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
           A + F EM E  + P +VT+  +  G   + DM + +  LK+  ++     G     Y +
Sbjct: 526 AVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEK-----GIVPDTYSY 580

Query: 298 KP 299
           +P
Sbjct: 581 RP 582



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 98/219 (44%), Gaps = 11/219 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTS+I    K      A      MI  G  PN VTY  ++NG+C+             +
Sbjct: 684 IYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAG----------FV 733

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE +  +M+     P+  ++   L + ++         +L+    KG+    ATY+ +
Sbjct: 734 NEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNML 793

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C  GRIE+A EL+  M+ +GV P   TY     E   R D   A++L+  M E G+
Sbjct: 794 IRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGI 853

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
             P+  +YN LI        M    E+ N++   GL P+
Sbjct: 854 -RPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPN 891



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 11/138 (7%)

Query: 15  IDMAERF-LGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           +DM +   L   I +G+  N  TYN+L+ G CR+            I  A ++   M   
Sbjct: 767 VDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGR----------IEEASELITRMIGD 816

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           G+ PD  +++ +++   R +  + +++  N M EKGI P    Y++++   C  G +  A
Sbjct: 817 GVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKA 876

Query: 134 EELLGEMVRNGVCPSAET 151
            EL  EM+R G+ P+ +T
Sbjct: 877 TELRNEMLRQGLIPNNKT 894



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 19/211 (9%)

Query: 73  RGIEPDVTSFSIVLHVYSRAH-----------------QPQLSLDKLNFMKEKGICPTVA 115
           RG +    SF I++H   +A+                 +P    + L    EK    + +
Sbjct: 98  RGFDHSTASFCILIHALVKANLFWPASSLLQTLLLRALKPSDVFNVLFSCYEKCKLSSSS 157

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMV-RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
           ++  +++      R+ D   +   M+ +  + P   T +         +    AM+L+  
Sbjct: 158 SFDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFND 217

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M   G+  P+++ Y  +I     L  +   +E+   ++ +G   ++  Y +LI GLC+KQ
Sbjct: 218 MVSVGI-RPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQ 276

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           K  EA     ++  K L P  VT+ TL  GL
Sbjct: 277 KVWEAVGIKKDLAGKDLKPDVVTYCTLVYGL 307



 Score = 41.2 bits (95), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 82/209 (39%), Gaps = 24/209 (11%)

Query: 94  QPQLSLDKLNFMK-EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
            P+L L   NF+   +G   + A++  ++  L        A  LL  ++   + PS + +
Sbjct: 83  DPKLGLRFFNFLGLHRGFDHSTASFCILIHALVKANLFWPASSLLQTLLLRALKPS-DVF 141

Query: 153 NCFFKEY-------------------RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
           N  F  Y                   R R+  +G + +++ M      +P + + + L+ 
Sbjct: 142 NVLFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVL-VFKMMITKVSLLPEVRTLSALLH 200

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
             +      +  E++ND+   G+ PD+  YT +I  LCE +    A +    M   G   
Sbjct: 201 GLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDV 260

Query: 254 QKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
             V +  L  GL +    + W  +  K D
Sbjct: 261 NIVPYNVLIDGLCKKQ--KVWEAVGIKKD 287


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 129/246 (52%), Gaps = 10/246 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N +  A  F  EM E+G+ P VV+ N+L+  +C+          E+T+ +A ++F EM  
Sbjct: 134 NHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKN---------EETVESAFRLFREMPN 184

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           RG +PD  ++  +++   +  +   + + L+ M+EKG+ P+V +Y+S++  LC    +++
Sbjct: 185 RGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDE 244

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A ELL EM+ NG+ P+  TY+           ++ AM+L   M    L +PNM +Y+ LI
Sbjct: 245 AIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRL-LPNMVTYSTLI 303

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                  +     EI + ++  GL PD   Y  +I GLC    ++EA  +  EM   G+ 
Sbjct: 304 NGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGIS 363

Query: 253 PQKVTF 258
           P + ++
Sbjct: 364 PNRASW 369



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 131/271 (48%), Gaps = 18/271 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK+ +I  A+  L EM E+G+ P+VV+Y  L++G+C+  +L           
Sbjct: 194 YGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLD---------- 243

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ +EM + GIEP+V ++S ++    ++     +++ L  M  + + P + TYS+++
Sbjct: 244 EAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLI 303

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+  +A E+L  M   G+ P A  Y           +   A     +M   G+ 
Sbjct: 304 NGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGIS 363

Query: 182 VPNMHSYNILIGMFMAL-----NRMDMVR--EIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
            PN  S+   + M   +     N +D  R  +++  ++  G+  ++ ++  L+   C++ 
Sbjct: 364 -PNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKRG 422

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
              +A +   EMI  G +P +  +  L  GL
Sbjct: 423 DLNKAARILEEMILDGCIPDEGMWNVLMCGL 453



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 125/250 (50%), Gaps = 18/250 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI+G C+ N +D A   L EMI  G+EPNV TY+ L++G+C+  S H S+  E    
Sbjct: 229 YTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCK--SGHSSQAME---- 282

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + + M  R + P++ ++S +++   +  + + +++ L+ M+ +G+ P    Y  ++
Sbjct: 283 ----LLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRII 338

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR-------GRKDANGAMKLYRQ 174
             LC+    ++A   + EM   G+ P+  ++    K +           D   A +LY  
Sbjct: 339 SGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLS 398

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M+  G+ V  + +++ L+  F     ++    I  ++   G  PD   + +L+ GL +++
Sbjct: 399 MRTRGISV-EIGTFDCLVKCFCKRGDLNKAARILEEMILDGCIPDEGMWNVLMCGLWDRK 457

Query: 235 KWKEACQYFV 244
           K +E  +  V
Sbjct: 458 KVRETTELLV 467



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 2/209 (0%)

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R AE + + M+    E     F  +   Y R H+P  ++   + M++  + PT  +Y +V
Sbjct: 67  RPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKMEDFQVKPTQKSYLTV 126

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMKEDG 179
              L     ++ A     EM   G+ P+  + N   K   +  +    A +L+R+M   G
Sbjct: 127 FDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRG 186

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C P+ ++Y  LI     L ++   +E+ ++++  GL P + SYT LIHGLC+     EA
Sbjct: 187 -CQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEA 245

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            +   EMI  G+ P   T+ +L  GL +S
Sbjct: 246 IELLEEMIINGIEPNVFTYSSLMDGLCKS 274



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 125/265 (47%), Gaps = 12/265 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + ++I+    +N+   AE  L  M +   E   VT +V L  +CR        R  + + 
Sbjct: 53  FGAMIHRLVSVNQFRPAEGMLERMKQEDCE---VTEDVFLT-ICRGYG-----RVHRPL- 102

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A +VF +M    ++P   S+  V  +    +  + ++     M+EKGI PTV + + ++
Sbjct: 103 DAIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILI 162

Query: 122 KCLCSCGR-IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           K LC     +E A  L  EM   G  P + TY             + A +L  +M+E GL
Sbjct: 163 KALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGL 222

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ SY  LI      N +D   E+  ++  +G+ P++ +Y+ L+ GLC+     +A 
Sbjct: 223 S-PSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAM 281

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
           +    M+ + LLP  VT+ TL  GL
Sbjct: 282 ELLEVMVRRRLLPNMVTYSTLINGL 306



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 55  RFEKTIRNAEKVFD---EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC 111
           + EK I     +FD   E    G   D  +F  ++H     +Q + +   L  MK++   
Sbjct: 23  KAEKDINKTLVMFDSATEEYSNGFRHDHNTFGAMIHRLVSVNQFRPAEGMLERMKQEDCE 82

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
            T   + ++ +      R  DA  +  +M    V P+ ++Y   F           A+  
Sbjct: 83  VTEDVFLTICRGYGRVHRPLDAIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGF 142

Query: 172 YRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           Y++M+E G+  P + S NILI  +      ++    ++ ++   G  PD  +Y  LI+GL
Sbjct: 143 YKEMREKGI-PPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGL 201

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           C+  K  +A +   EM EKGL P  V++ +L  GL QS+ L
Sbjct: 202 CKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNL 242



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 59/163 (36%), Gaps = 52/163 (31%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPN-------VVTYNVLLNGVCRRASLHPS 53
           MY  +I G C       A  F+ EM   G+ PN       V  +N+++ G+C   ++ P+
Sbjct: 333 MYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMVVQGLCN--NVDPT 390

Query: 54  ERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPT 113
             F+        ++  MR RGI  +                                   
Sbjct: 391 RAFQ--------LYLSMRTRGISVE----------------------------------- 407

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           + T+  +VKC C  G +  A  +L EM+ +G  P    +N   
Sbjct: 408 IGTFDCLVKCFCKRGDLNKAARILEEMILDGCIPDEGMWNVLM 450


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 143/328 (43%), Gaps = 62/328 (18%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTSLI G CK  R   A+R +  ++ +G  P+  TY+ L++G+CR          +K +
Sbjct: 354 VYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCR----------QKEL 403

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  V D+M  +G++P   +++I++    R      S   L+ M   GI P V TY+  
Sbjct: 404 SEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIF 463

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V+  C  GR+EDAE ++  MV +GVCP+  TYN     Y      + A   ++ M  +G 
Sbjct: 464 VRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANG- 522

Query: 181 CVPNMHSYNILIGMFMA------------------------------------------- 197
           C PN  SY +L+ + +                                            
Sbjct: 523 CKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYN 582

Query: 198 --------LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
                   ++R+D  + +  +++ + L P  D YT +I   C  +   EA  +   M++ 
Sbjct: 583 CFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKS 642

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           G +PQ  ++  +   L +   ++T +++
Sbjct: 643 GYIPQLESYRHIISSLCEEGSIQTAKQV 670



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 142/296 (47%), Gaps = 24/296 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G+CK  ++D A      M++ G+ PNVVTY  L+ G C    L  + R  +++ 
Sbjct: 250 YTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSME 309

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHV---YSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           N+          G+ P+  + S+++     + R  + QL L  L    +KGI      Y+
Sbjct: 310 NS----------GLVPNEWTCSVLIDALCKHERVGEAQLLLGSL---IQKGIKVNEIVYT 356

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           S++  LC  GR   A+ L+  +V  G  P A TY+        +K+ + AM +   M E 
Sbjct: 357 SLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEK 416

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P+  +Y I+I   +     D  ++I + +  +G+ PD+ +YT+ +   C + + ++
Sbjct: 417 GV-QPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMED 475

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGL----IQSDMLRTWRRLKK---KLDEESIT 287
           A    + M++ G+ P  VT+  L  G     + S    T++ +     K +EES T
Sbjct: 476 AEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYT 531



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 126/267 (47%), Gaps = 11/267 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++++G C   R   AE  L + +  G EPNVV YN L++G C    L          
Sbjct: 179 VYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLEL-------- 230

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  VF+ M V G  P+V +++ ++  + ++ +   ++   + M + G+ P V TY+++
Sbjct: 231 --AVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTAL 288

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  CS G+++ A  LL  M  +G+ P+  T +         +    A  L   + + G+
Sbjct: 289 IQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGI 348

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            V N   Y  LI       R      +   +   G  PD  +Y+ LI GLC +++  EA 
Sbjct: 349 KV-NEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAM 407

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQ 267
               +M+EKG+ P  VT+  +   L++
Sbjct: 408 LVLDDMMEKGVQPSPVTYTIIIDELVR 434



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 127/285 (44%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI  +C    +  ++R L  ++  G  P+   Y   + G CR   L           
Sbjct: 75  YTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLL----------A 124

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F  M +RG      +++ +LH    A   + ++     M+  G  P    Y+++V
Sbjct: 125 HACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMV 184

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +AE LL + +  G  P+   YN     Y    D   A+ ++ +M  +G C
Sbjct: 185 HGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNG-C 243

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  LI  F    ++D    +++ +  +GL P++ +YT LI G C   +   A +
Sbjct: 244 SPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYR 303

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
               M   GL+P + T   L   L + + +   + L   L ++ I
Sbjct: 304 LLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGI 348



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 68/137 (49%), Gaps = 18/137 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTS+I   C++  +  A  F+  M++ G  P + +Y  +++ +C           E +I
Sbjct: 615 VYTSIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRHIISSLCE----------EGSI 664

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLH-VYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           + A++VF +M  +    +  ++ I++  +  + +  + S   L+ M+EK   P+ A Y+ 
Sbjct: 665 QTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKGYVAECS-SLLSVMEEKNYRPSDALYAR 723

Query: 120 VVKCLCSCGRIEDAEEL 136
           +       G+I DA ++
Sbjct: 724 LT------GKITDANDI 734


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 134/271 (49%), Gaps = 14/271 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK        R L ++    V+P+VV YN ++N +C+           K + 
Sbjct: 166 YGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKN----------KLLG 215

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  V+ EM V+GI PDV +++ ++H +    + + +   LN MK K I P V T+S ++
Sbjct: 216 DACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLI 275

Query: 122 KCLCSCGR---IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
             L   G+   +++A  L  EM    + P   TYN              A+ L ++MKE 
Sbjct: 276 DALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEH 335

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P+++SY IL+       R+++ +E +  +   G   ++  Y ++I+GLC+   + E
Sbjct: 336 GI-QPDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGE 394

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           A     +M  KG +P  +TF T+   L + D
Sbjct: 395 AMDLKSKMEGKGCMPNAITFRTIICALSEKD 425



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 145/318 (45%), Gaps = 36/318 (11%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI---- 60
           LI  +C    I +A      +++RG  P+ +T N L+ G+C R  +  +  F   +    
Sbjct: 99  LINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQG 158

Query: 61  ---------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
                                +   ++  ++    ++PDV  ++ +++   +      + 
Sbjct: 159 FQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDAC 218

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF--- 156
           D  + M  KGI P V TY++++   C  G++++A  LL EM    + P   T++      
Sbjct: 219 DVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDAL 278

Query: 157 -KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            KE + +K  + AM L+ +MK   + +P++ +YN LI      + ++    +  ++K  G
Sbjct: 279 GKEGK-KKMVDEAMSLFEEMKHKNM-IPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHG 336

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           + PD+ SYT+L+ GLC+  + + A ++F  ++ KG       +  +  GL ++ +     
Sbjct: 337 IQPDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAM 396

Query: 276 RLKKKLD-----EESITF 288
            LK K++       +ITF
Sbjct: 397 DLKSKMEGKGCMPNAITF 414



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 14/255 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++I   CK   +  A     EMI +G+ P+VVTY  L++G C    +          
Sbjct: 200 MYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKM---------- 249

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNF---MKEKGICPTVATY 117
           + A  + +EM+++ I PDV +FS+++    +  + ++  + ++    MK K + P + TY
Sbjct: 250 KEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTY 309

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           +S++  LC    +E A  LL EM  +G+ P   +Y               A + ++ +  
Sbjct: 310 NSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLLV 369

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G C  N+  YN++I             ++ + ++G G  P+  ++  +I  L EK +  
Sbjct: 370 KG-CHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTIICALSEKDEND 428

Query: 238 EACQYFVEMIEKGLL 252
           +A +   EMI +GLL
Sbjct: 429 KAEKILREMIARGLL 443



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 1/157 (0%)

Query: 109 GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGA 168
           GI P + T S ++ C C    I  A  +   +++ G  P A T N   K    R +    
Sbjct: 88  GITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKT 147

Query: 169 MKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228
           +  + Q+   G  +  + SY  LI           V  +   ++G  + PD+  Y  +I+
Sbjct: 148 LYFHDQVVAQGFQLDQV-SYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIIN 206

Query: 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            LC+ +   +AC  + EMI KG+ P  VT+ TL  G 
Sbjct: 207 SLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGF 243



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 66/140 (47%), Gaps = 1/140 (0%)

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P    +N         K     + L++Q + +G+  P++ + +ILI  F     + +   
Sbjct: 56  PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGI-TPDLCTLSILINCFCHQAHITLAFS 114

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++ ++   G  PD  +   LI GLC + + K+   +  +++ +G    +V++ TL  GL 
Sbjct: 115 VFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLC 174

Query: 267 QSDMLRTWRRLKKKLDEESI 286
           ++   +   RL +KL+  S+
Sbjct: 175 KAGETKAVARLLRKLEGHSV 194


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 138/267 (51%), Gaps = 15/267 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CKI +++ AE  L +M  +GV  N + +N +++G CR+            + 
Sbjct: 320 YGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKG----------MVD 369

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+   M   G+E D+ +++ +     R ++   +   L+ M E G+ P   TY++++
Sbjct: 370 DALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLI 429

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + +A  L  EM   G  PS  TYN     Y  +     A +  ++M++ G  
Sbjct: 430 SIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGF- 488

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++++Y  L+       ++D+  +++ ++K  G  P++ +YT LI GL ++ + + A Q
Sbjct: 489 VPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQ 548

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            + +M++ GL+P     ++LY  L+ S
Sbjct: 549 LYDDMLKAGLIPD----DSLYSALVGS 571



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 141/305 (46%), Gaps = 26/305 (8%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRAS---------LHPSER 55
           ++ G CK  R+D A R L +M   GV  N + YN LL+   R+           +  +E 
Sbjct: 183 VVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEG 242

Query: 56  FEKT----------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
            E T                I   E +F+EM+   +  DV  ++ V++ Y RA   + + 
Sbjct: 243 IEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAA 302

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
             L+     G+ P   TY  ++   C  G++E AE LL +M   GV  +   +N     Y
Sbjct: 303 KVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGY 362

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
             +   + A+K+   M++ G+ + ++++YN L      +NR+D  + + + +   G+ P+
Sbjct: 363 CRKGMVDDALKIKAAMEKMGVEL-DIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPN 421

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
             +YT LI   C+     EA + F EM EKG  P  VT+  +  G  +   +R   R +K
Sbjct: 422 YVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRK 481

Query: 280 KLDEE 284
           +++++
Sbjct: 482 EMEKK 486



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 25/148 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI   CK   +  A R   EM E+G  P+VVTYNV+++G  ++ S+  +ERF K + 
Sbjct: 425 YTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEME 484

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     A K+F+EM+ RG EP+V +++ ++   ++  + +
Sbjct: 485 KKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSE 544

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +    + M + G+ P  + YS++V  L
Sbjct: 545 AAFQLYDDMLKAGLIPDDSLYSALVGSL 572



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 4/197 (2%)

Query: 109 GICPTVAT---YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
           G CP   +    S VV  LC  GR++DA  LL +M R+GV  +A  YN     Y  +KD 
Sbjct: 169 GSCPGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDD 228

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
               ++   M+ +G+    + +Y IL+        +  V  ++N++K + +  D+  YT 
Sbjct: 229 GRVQEILEIMENEGI-EATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTA 287

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           +I+  C     + A +   E +  G+ P + T+  L  G  +   +     L   +  + 
Sbjct: 288 VINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQG 347

Query: 286 ITFGSEFQNYHFKPYRR 302
           +       N     Y R
Sbjct: 348 VGLNQIIFNTMIDGYCR 364


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 138/308 (44%), Gaps = 43/308 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G CK   ++ A  F  EM+E G +P+V TYN+L++G C+  +   +        
Sbjct: 199 YNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAA-------- 250

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            +  +  E  + G   D+ +++ ++   ++  + + ++  +  +   G  PT+ATY++++
Sbjct: 251 -SHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALL 309

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
             LC  GR+E+A +LL ++V NG  P   TY          K +  A KL+++M   GL 
Sbjct: 310 NGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLA 369

Query: 181 ---------------------------------CVPNMHSYNILIGMFMALNRMDMVREI 207
                                            CVP++ + + +I       R+     I
Sbjct: 370 LDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRI 429

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           +  ++  GL P+   Y+ LIHGLC+ +K   A +   +M +    P  +T+  L  GL +
Sbjct: 430 FKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCK 489

Query: 268 SDMLRTWR 275
           S  +   R
Sbjct: 490 SGDVEAAR 497



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 124/267 (46%), Gaps = 13/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G CK+ R++ A   L ++++ G  P+VVTY  L++G+ +          EK   
Sbjct: 305 YNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGK----------EKRSF 354

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVL-HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            A K+F EM +RG+  D   ++ ++  +      PQ S      M   G  P V T S++
Sbjct: 355 EAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQAS-SVYKTMTSHGCVPDVVTLSTM 413

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L   GRI  A  +   M   G+ P+   Y+         +  + A+++  QMK+   
Sbjct: 414 IDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKK-AF 472

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P+  +YNILI        ++  R  ++++  +G  PD+ +Y +LI G C+      AC
Sbjct: 473 CTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAAC 532

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQ 267
             F +M         VT+  L  GL +
Sbjct: 533 GVFDDMSSSRCSANVVTYGALISGLCK 559



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 117/264 (44%), Gaps = 10/264 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI    +  +I  A      M   G  P+VVT + +++G      L  + R    +R
Sbjct: 94  YTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDG------LSKAGRIGAAVR 147

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F  M  RG+ P+   +S ++H   +A +   +L+ L  MK+    P   TY+ ++
Sbjct: 148 ----IFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLI 203

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +E A     EM+  G  P   TYN     +    + + A     Q      C
Sbjct: 204 DGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGC 263

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++H+Y  ++       +++    +   +  +G  P + +Y  L++GLC+  + +EA  
Sbjct: 264 TIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAID 323

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
              ++++ G  P  VT+ +L  GL
Sbjct: 324 LLRKIVDNGCTPDVVTYTSLIDGL 347



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 135/313 (43%), Gaps = 29/313 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNG------------------ 43
           Y +L+ G CK+ R++ A   L ++++ G  P+VVTY  L++G                  
Sbjct: 24  YNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMA 83

Query: 44  --------VCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                   VC  A +    +  K I  A  V+  M   G  PDV + S ++   S+A + 
Sbjct: 84  LRGLALDTVCYTALIRELLQTGK-IPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRI 142

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             ++     M+ +G+ P    YS+++  LC   +++ A E+L +M +    P   TYN  
Sbjct: 143 GAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVL 202

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV-REIWNDVKGS 214
                   D   A   + +M E G C P++++YNILI  F      D     +  +   +
Sbjct: 203 IDGLCKSGDVEAARAFFDEMLEAG-CKPDVYTYNILISGFCKAGNTDAASHSLAQETTIN 261

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTW 274
           G   D+ +YT ++  L + +K +EA     ++   G  P   T+  L  GL +   L   
Sbjct: 262 GCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA 321

Query: 275 RRLKKKLDEESIT 287
             L +K+ +   T
Sbjct: 322 IDLLRKIVDNGCT 334



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 112/255 (43%), Gaps = 11/255 (4%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           +I+ A   + ++   G  P + TYN LLNG+C+        R E+ I    K+ D     
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMG------RLEEAIDLLRKIVD----N 50

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           G  PDV +++ ++    +  +   +      M  +G+      Y+++++ L   G+I  A
Sbjct: 51  GCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQA 110

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             +   M  +G  P   T +              A+++++ M+  GL  PN   Y+ LI 
Sbjct: 111 SSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGL-APNEVVYSALIH 169

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
                 +MD   E+   +K +   PD  +Y +LI GLC+    + A  +F EM+E G  P
Sbjct: 170 GLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKP 229

Query: 254 QKVTFETLYRGLIQS 268
              T+  L  G  ++
Sbjct: 230 DVYTYNILISGFCKA 244



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 10/125 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y++LI+G CK  ++D A   L +M +    P+ +TYN+L++G+C+   +  +  F    
Sbjct: 444 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAF---- 499

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                 FDEM   G +PDV +++I++  + +A     +    + M        V TY ++
Sbjct: 500 ------FDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGAL 553

Query: 121 VKCLC 125
           +  LC
Sbjct: 554 ISGLC 558


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 142/299 (47%), Gaps = 46/299 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK   ++ A   +  +  +G EP+V++YN+LL     RA L+  +  E    
Sbjct: 255 YNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILL-----RAFLNQGKWDE---- 305

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             EK+  EM  RG EP+  ++SI++    R  +   ++  L  M EK + P   +Y  ++
Sbjct: 306 -GEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLI 364

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR++ A  ++  M+ NG  P    YN          +AN A++++ +++  G C
Sbjct: 365 SALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMG-C 423

Query: 182 VPNMHSYNILI-------------GMFMA-------------------LNRMDMVRE--- 206
            PN+ SYN +I             GM  A                   L R  +V E   
Sbjct: 424 PPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIG 483

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           + +D++ SG  P + SY +++ GLC+ ++  +A   F EMIEKG  P + T+  L  G+
Sbjct: 484 LLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGI 542



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 126/267 (47%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+CK+N+I+ A + L  M  RG  P++VTYN+++  +C R  L           
Sbjct: 150 YNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGL--------- 200

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V D++ +    P V +++I++           ++  L  M  +G+ P + TY++++
Sbjct: 201 -ALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAII 259

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + +C  G +E A EL+  +   G  P   +YN   + +  +   +   KL  +M   G C
Sbjct: 260 RGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRG-C 318

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +Y+ILI       R+D    +   +    L PD  SY  LI  LC++ +   A  
Sbjct: 319 EPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIG 378

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
               MI  G LP  V + T+   L ++
Sbjct: 379 IMDYMISNGCLPDIVNYNTILAALCKN 405



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 125/263 (47%), Gaps = 12/263 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T LI G+     I+ A R + E++E   EP+V  YN +++G C+             I  
Sbjct: 117 TKLIKGFFNFKNIEKASRVM-EILESHTEPDVFAYNAVISGFCKV----------NQIEA 165

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A +V + M+ RG  PD+ +++I++       +  L+L  L+ +      PTV TY+ +++
Sbjct: 166 ATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIE 225

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
                G I +A +LL EM+  G+ P   TYN   +          A +L   +   G C 
Sbjct: 226 ATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKG-CE 284

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ SYNIL+  F+   + D   ++  ++   G  P+  +Y++LI  LC   +  EA   
Sbjct: 285 PDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISV 344

Query: 243 FVEMIEKGLLPQKVTFETLYRGL 265
              MIEK L P   +++ L   L
Sbjct: 345 LKVMIEKELTPDTYSYDPLISAL 367



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 136/300 (45%), Gaps = 26/300 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI        I+ A + L EM+ RG+ P++ TYN ++ G+C+          E  + 
Sbjct: 220 YTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK----------EGMVE 269

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++   +  +G EPDV S++I+L  +    +       +  M  +G  P   TYS ++
Sbjct: 270 RAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILI 329

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDG 179
             LC  GRI++A  +L  M+   + P   +Y+         GR D   A+ +   M  +G
Sbjct: 330 SSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDL--AIGIMDYMISNG 387

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C+P++ +YN ++         +   EI+N ++G G  P++ SY  +I  L        A
Sbjct: 388 -CLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRA 446

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
                 MI KG+ P ++T+ +L   L +  ++           EE+I    + +   F+P
Sbjct: 447 LGMVPAMISKGIDPDEITYNSLISCLCRDGLV-----------EEAIGLLDDMEQSGFRP 495



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 119/256 (46%), Gaps = 12/256 (4%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           CK  + + +  FL  ++ +G  P+V+    L+ G              K I  A +V  E
Sbjct: 89  CKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNF----------KNIEKASRVM-E 137

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           +     EPDV +++ V+  + + +Q + +   LN MK +G  P + TY+ ++  LC+  +
Sbjct: 138 ILESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRK 197

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           +  A  +L +++ +   P+  TY    +        N AMKL  +M   GL +P+M++YN
Sbjct: 198 LGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGL-LPDMYTYN 256

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            +I        ++   E+   +   G  PD+ SY +L+     + KW E  +   EM  +
Sbjct: 257 AIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSR 316

Query: 250 GLLPQKVTFETLYRGL 265
           G  P KVT+  L   L
Sbjct: 317 GCEPNKVTYSILISSL 332


>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Cucumis sativus]
          Length = 481

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 148/283 (52%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SL++G+C   +++ ++R   EM+++GV+PN+V +NVL++ +C+   +         + 
Sbjct: 201 YSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKI-------GDLS 253

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+F  M  +G E +  S++I+++ Y +  + + +++  N M + G  P V TYS+++
Sbjct: 254 SARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLL 313

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G++ DA +L G M  +G+   +  Y  F            AM+L+ ++K     
Sbjct: 314 TGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFK 373

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + +  SY+ LI       ++++  E +  +   GL P++ +  ++IHG C  ++  +A  
Sbjct: 374 L-DFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANI 432

Query: 242 YF---VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            F    +M E G  P  +T+ TL RG  +S+ L     L  K+
Sbjct: 433 LFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKM 475



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 133/283 (46%), Gaps = 17/283 (6%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVL---LNGVCRRASLHPSERFEKTIRNAEKV 66
           C +NR+      +  ++ RG  P++VTYN L   L G+C+    H  E        A+++
Sbjct: 136 CNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVG--HEDE--------AKEI 185

Query: 67  FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS 126
           F+EM+ +G+ P+V S+S ++H +  A + + S    N M ++G+ P +  ++ ++  LC 
Sbjct: 186 FEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCK 245

Query: 127 CGRIED---AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            G+I D   A +L   M   G   +  +Y      Y        AM LY +M + G   P
Sbjct: 246 EGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGK-RP 304

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N+ +Y+ L+   +   ++    +++  +K SG+  D   Y + + GLC+     EA + F
Sbjct: 305 NVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELF 364

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            E+          ++  L  GL ++  +       K+L +E +
Sbjct: 365 NELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGL 407



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 138/289 (47%), Gaps = 19/289 (6%)

Query: 10  CKINRIDM--AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVF 67
           CK   ID+  A  F   M+     P + ++N LL G+ +    H S+ F         ++
Sbjct: 64  CKTGNIDVIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKIN--HYSQLFS--------LY 113

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK---CL 124
           ++MR+ G+ PD+ + +I+ +     ++    L  +  +  +G  P + TY++++K    L
Sbjct: 114 NKMRLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGL 173

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G  ++A+E+  EM   G+ P+  +Y+     +        + +L+ +M + G+  PN
Sbjct: 174 CKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGV-QPN 232

Query: 185 MHSYNILIGMFM---ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +  +N+LI +      +  +   R+++  +   G   +  SYT+LI+G C+  K +EA  
Sbjct: 233 LVQFNVLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMN 292

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
            + EM + G  P   T+ TL  GL+Q+  +    +L   +    I+  S
Sbjct: 293 LYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDS 341



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 134/301 (44%), Gaps = 21/301 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ G  KIN          +M   G+ P++ T N+L N +C              + 
Sbjct: 93  FNRLLGGLAKINHYSQLFSLYNKMRLAGLSPDLFTLNILANCLCNL----------NRVS 142

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIV---LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
                   +  RG  PD+ +++ +   L+   +      + +    MK +G+ P V +YS
Sbjct: 143 EGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKAQGMIPNVISYS 202

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF----KEYRGRKDANGAMKLYRQ 174
           S+V   C  G++E+++ L  EMV  GV P+   +N       KE +   D + A KL+  
Sbjct: 203 SLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGK-IGDLSSARKLFLS 261

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M   G C  N  SY ILI  +  + +++    ++N++   G  P++ +Y+ L+ GL +  
Sbjct: 262 MPSKG-CEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTG 320

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           K  +A + F  M   G+      +     GL ++ +L     L  +L  +S  F  +F++
Sbjct: 321 KVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNEL--KSYNFKLDFES 378

Query: 295 Y 295
           Y
Sbjct: 379 Y 379



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 77/169 (45%), Gaps = 28/169 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-------- 53
           Y++L+ G  +  ++  A +  G M   G+  +   Y + L+G+C+   L  +        
Sbjct: 309 YSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELK 368

Query: 54  --------ERFEKTIRN---------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ-- 94
                   E + + I           A + F ++   G++P+V + +I++H + R  Q  
Sbjct: 369 SYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVD 428

Query: 95  -PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR 142
              +  +K+  M+E G  P + TY+++++  C   ++E+   LL +M +
Sbjct: 429 KANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKMFK 477


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 134/275 (48%), Gaps = 11/275 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T LI  +C++  +D     LG++I+ G+EPNV+T++ L+NG C           E  I  
Sbjct: 130 TILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFC----------IEGKIGR 179

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A ++FD M  RG +P+V S+SI++    R  +    +  L  MK  G  P V  Y+++V 
Sbjct: 180 AIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVD 239

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC    + +A  +  +M   G+ P+  TY       R       A  L  +MK  G  +
Sbjct: 240 RLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMK-GGNIM 298

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ ++++LI +      +   R I   +   G+ PD+ +Y  L++G C + +  EA + 
Sbjct: 299 PDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKV 358

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           F  MI KG +P   +F  L  G  ++  +   ++L
Sbjct: 359 FEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQL 393



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 130/260 (50%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I G C++ +     + L  M   G EP+VV YN +++ +C+          ++ + 
Sbjct: 199 YSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCK----------DRLVN 248

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F +M+  GI P V +++ ++H      + + +   LN MK   I P +  +S ++
Sbjct: 249 EAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLI 308

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G + +A  +L  M   GV P   TYN     Y  R +   A K++  M   G  
Sbjct: 309 DIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGR- 367

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ S++IL+  +    R+D  +++++++   GL PD  SY  LI GLC+ ++  EA +
Sbjct: 368 MPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEE 427

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F +M   G  P  VT+  L
Sbjct: 428 LFKDMHSNGYPPNLVTYSIL 447



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 140/282 (49%), Gaps = 15/282 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI+G   + R   A   L EM    + P++V ++VL++ +C+          E  + 
Sbjct: 269 YTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCK----------EGEVS 318

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M   G+EPDV +++ +++ Y    +   +      M  KG  P V ++S +V
Sbjct: 319 EARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILV 378

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI++A++L  EM   G+ P   +YN         +    A +L++ M  +G  
Sbjct: 379 NGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGY- 437

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y+IL+        +D    ++  ++ SGL PDL +Y ++I G+C+  K+K+A +
Sbjct: 438 PPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARE 497

Query: 242 YFVEMIEKGLLPQK----VTFETLYRGLIQSDMLRTWRRLKK 279
            F E+  KGL P       T + + +G +  +  + +R+++K
Sbjct: 498 LFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEK 539



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 120/272 (44%), Gaps = 11/272 (4%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           I+ A      M+     P++V +  L + + R        +  KT+ +  K   +M + G
Sbjct: 72  INDALSAFNHMVNTNPLPSIVKFGELFSALVRM-------KHYKTVVSLSK---QMEMAG 121

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           I  DV S +I+++ + R          L  + + G+ P V T+S+++   C  G+I  A 
Sbjct: 122 ISHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAI 181

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           EL   MV  G  P+  +Y+   K           +KL   MK  G C P++  YN ++  
Sbjct: 182 ELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVG-CEPDVVIYNTIVDR 240

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                 ++    I+  +KG+G+ P + +YT LIHGL    +WKEA     EM    ++P 
Sbjct: 241 LCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPD 300

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            V F  L   + +   +   R + K + E  +
Sbjct: 301 LVAFSVLIDIMCKEGEVSEARVILKTMTEMGV 332



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 1/218 (0%)

Query: 48  ASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE 107
           +S     R  + I +A   F+ M      P +  F  +     R    +  +     M+ 
Sbjct: 60  SSYRHKNRTFRNINDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEM 119

Query: 108 KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG 167
            GI   V + + ++ C C    ++    +LG++++ G+ P+  T++     +        
Sbjct: 120 AGISHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGR 179

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           A++L+  M   G   PN+HSY+I+I     + +   V ++   +K  G  PD+  Y  ++
Sbjct: 180 AIELFDVMVARGY-KPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIV 238

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
             LC+ +   EA   F +M   G+LP  VT+ +L  GL
Sbjct: 239 DRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGL 276


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 148/315 (46%), Gaps = 46/315 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G C+   ++ A  F  EM++ G+ P+  TY  L+NG+C+ + L          +
Sbjct: 281 YNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRL----------K 330

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ + DEM   G++P++  +  ++  + +  +   + D L  M   G+ P    Y +++
Sbjct: 331 EAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLI 390

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  G++  A +LL EM++ G+ P   TYN   + +  + D +GA +L  +M+  G+ 
Sbjct: 391 RGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGI- 449

Query: 182 VPNMHSYNILIG----------------------------MFMAL-------NRMDMVRE 206
           +PN++SY I+I                             M+  L         + +  E
Sbjct: 450 LPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACE 509

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
               +  + + PDL  Y  LI GL    + +EA +Y+ ++ ++GL+P + T+  L  G  
Sbjct: 510 ALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYC 569

Query: 267 QSDMLRTWRRLKKKL 281
           ++  L    +L +++
Sbjct: 570 KTGNLEKADQLLRQM 584



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 131/269 (48%), Gaps = 11/269 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +L+ G+ K  +   A   L EMI  GV+PN + Y+ L+ G+C+   L          
Sbjct: 350 VYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLG--------- 400

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+  EM   G+ PD  +++ ++  + + H    + + LN M+  GI P V +Y  +
Sbjct: 401 -RASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIM 459

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G  ++A  LL EM+  G+ P+A  Y      +    + + A +   +M +  +
Sbjct: 460 INGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANV 519

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++  YN LI     + RM+   E +  V+  GL PD  +Y+ LIHG C+    ++A 
Sbjct: 520 H-PDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKAD 578

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           Q   +M+  GL P   T+  L  G  +S+
Sbjct: 579 QLLRQMLNSGLKPNADTYTDLLEGYFKSN 607



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 136/296 (45%), Gaps = 27/296 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY +LI G CKI ++  A + L EMI+ G+ P+  TYN L+ G  ++     +      +
Sbjct: 385 MYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEM 444

Query: 61  RN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           RN                         A  + +EM   G++P+   ++ ++  +S+    
Sbjct: 445 RNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNI 504

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
            L+ + L  M +  + P +  Y+S++K L + GR+E+AEE   ++ + G+ P   TY+  
Sbjct: 505 SLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGL 564

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y    +   A +L RQM   GL  PN  +Y  L+  +   N  + V  I   + GSG
Sbjct: 565 IHGYCKTGNLEKADQLLRQMLNSGL-KPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSG 623

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ-SDM 270
             PD   Y ++I  L   +  + A     E+ + GL+P    + +L  GL + +DM
Sbjct: 624 DKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADM 679



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 125/276 (45%), Gaps = 12/276 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI+G+CK   ++ A++ L +M+  G++PN  TY  LL G  +      S  +EK   
Sbjct: 561 YSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFK------SNDYEKV-- 612

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +   M   G +PD   + IV+   SR+   +++   L  +++ G+ P +  YSS++
Sbjct: 613 --SSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLI 670

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    +E A  LL EM + G+ P    YN     +    D + A  ++  +   GL 
Sbjct: 671 SGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGL- 729

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN  +Y  LI        +    +++ ++   G+ PD   Y +L  G  +    ++A  
Sbjct: 730 VPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALF 789

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
              EM  +G     + F TL  G  +   L+   +L
Sbjct: 790 LTEEMFNRGYANVSL-FNTLVHGFCKRGKLQETEKL 824



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 134/319 (42%), Gaps = 20/319 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNV---LLNGVCRRASLHPS----- 53
           +  L    C  +    A   L +MI     P +V  ++   + +   R  S  PS     
Sbjct: 118 FARLAASLCAASLFPQANGLLHQMILAHPHPPLVLASIQRAIQDTDHRSRSPSPSTAVLD 177

Query: 54  ---ERFEKT--IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK 108
              + ++KT  +RNA +V   M   G+ P     + +L    RA   +L      FM+  
Sbjct: 178 VLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKLKGFMEGA 237

Query: 109 GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGA 168
           GI P V TYS+ ++  C     + A+++  EM R     +  TYN              A
Sbjct: 238 GILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEA 297

Query: 169 MKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228
                +M + GL  P+  +Y  L+      +R+   + + +++  SGL P++  Y  L+ 
Sbjct: 298 FGFKEEMVDYGLS-PDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVD 356

Query: 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK-----LDE 283
           G  ++ K  EA     EMI  G+ P K+ ++ L RGL +   L    +L K+     L  
Sbjct: 357 GFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRP 416

Query: 284 ESITFGSEFQNYHFKPYRR 302
           ++ T+    Q  HF+ + +
Sbjct: 417 DTFTYNPLMQG-HFQQHDK 434



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 129/295 (43%), Gaps = 15/295 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+    + + +++  +  G M   G+ P+V TY+  +   C+           +    A+
Sbjct: 214 LLKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCK----------ARDFDAAK 263

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           KVF+EMR R    +  ++++++    R+   + +      M + G+ P   TY +++  L
Sbjct: 264 KVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGL 323

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C   R+++A+ LL EM  +G+ P+   Y      +        A  + ++M   G+  PN
Sbjct: 324 CKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGV-QPN 382

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
              Y+ LI     + ++    ++  ++   GL PD  +Y  L+ G  ++     A +   
Sbjct: 383 KIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLN 442

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
           EM   G+LP   ++  +  GL Q+       +    L EE I+ G +   + + P
Sbjct: 443 EMRNSGILPNVYSYGIMINGLCQN----GESKEAGNLLEEMISEGLKPNAFMYAP 493



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 119/275 (43%), Gaps = 32/275 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  +I    +   +++A   L E+ + G+ P++  Y+ L++G+C+ A +      EK +
Sbjct: 630 IYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADM------EKAV 683

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                + DEM   G+EP +  ++ ++  + R+     + +  + +  KG+ P   TY+++
Sbjct: 684 ----GLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTAL 739

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G I DA +L  EM+  G+ P A  YN          D   A+ L  +M   G 
Sbjct: 740 IDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGY 799

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              N+  +N L+  F    ++    ++ + +    + P+  +   ++    +  K  EA 
Sbjct: 800 A--NVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAH 857

Query: 241 QYFVE--------------------MIEKGLLPQK 255
           + F E                    MI KGL+P K
Sbjct: 858 RVFAELQQKKASQSATDRFSLLFTDMINKGLIPPK 892



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/248 (19%), Positives = 96/248 (38%), Gaps = 36/248 (14%)

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           + PD  S S++    S +  P+L LD   + + +   P+   ++ +   LC+      A 
Sbjct: 77  LSPDAVS-SLIFGGRSHSLHPKLLLDFFYWSRPRIAPPSADAFARLAASLCAASLFPQAN 135

Query: 135 ELLGEMV-----------------------RNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
            LL +M+                            PS    +     Y+       A ++
Sbjct: 136 GLLHQMILAHPHPPLVLASIQRAIQDTDHRSRSPSPSTAVLDVLVDTYKKTGSVRNAAQV 195

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
              M + GL  P     N L+   +  + M+++ ++   ++G+G+ PD+ +Y+  I   C
Sbjct: 196 VLMMADLGL-APTRRCCNGLLKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHC 254

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSE 291
           + + +  A + F EM  +     +VT+  +  GL +S  +           EE+  F  E
Sbjct: 255 KARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAV-----------EEAFGFKEE 303

Query: 292 FQNYHFKP 299
             +Y   P
Sbjct: 304 MVDYGLSP 311


>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
          Length = 374

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 138/267 (51%), Gaps = 15/267 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CKI +++ AE  L +M  +GV  N + +N +++G CR+            + 
Sbjct: 111 YGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKG----------MVD 160

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+   M   G+E D+ +++ +     R ++   +   L+ M E G+ P   TY++++
Sbjct: 161 DALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLI 220

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + +A  L  EM   G  PS  TYN     Y  +     A +  ++M++ G  
Sbjct: 221 SIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGF- 279

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++++Y  L+       ++D+  +++ ++K  G  P++ +YT LI GL ++ + + A Q
Sbjct: 280 VPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQ 339

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            + +M++ GL+P     ++LY  L+ S
Sbjct: 340 LYDDMLKAGLIPD----DSLYSALVGS 362



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 129/283 (45%), Gaps = 22/283 (7%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           + ++ G CK  R+D A R L +M   GV  N + YN LL+   R          +K    
Sbjct: 18  SVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVR----------QKDDGR 67

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
            +++ + M   GIE  V   +           P   LD+       G+ P   TY  ++ 
Sbjct: 68  VQEILEIMENEGIEATVGDGT--------CGGPPKVLDEC---VGNGVEPNERTYGVLIN 116

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C  G++E AE LL +M   GV  +   +N     Y  +   + A+K+   M++ G+ +
Sbjct: 117 GFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVEL 176

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
            ++++YN L      +NR+D  + + + +   G+ P+  +YT LI   C+     EA + 
Sbjct: 177 -DIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRL 235

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           F EM EKG  P  VT+  +  G  +   +R   R +K+++++ 
Sbjct: 236 FREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKG 278



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ ++I G+C+   +D A +    M + GVE ++ TYN L  G+CR   L          
Sbjct: 145 IFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLD--------- 195

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+ +   M   G+ P+  +++ ++ ++ +      +      M EKG  P+V TY+ +
Sbjct: 196 -EAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVM 254

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +      G I +AE    EM + G  P   TY      +      + A+KL+ +MK+ G 
Sbjct: 255 IHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRG- 313

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
             PN+ +Y  LI       R +   ++++D+  +GL PD   Y+ L+  L
Sbjct: 314 TEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSL 363



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 26/195 (13%)

Query: 109 GICPTVAT---YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
           G CP   +    S VV  LC  GR++DA  LL +M R+GV  +A  YN     Y  +KD 
Sbjct: 6   GSCPGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDD 65

Query: 166 NGAMKLYRQMKEDGL------------------CV-----PNMHSYNILIGMFMALNRMD 202
               ++   M+ +G+                  CV     PN  +Y +LI  F  + +M+
Sbjct: 66  GRVQEILEIMENEGIEATVGDGTCGGPPKVLDECVGNGVEPNERTYGVLINGFCKIGQME 125

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
               +  D++G G+G +   +  +I G C K    +A +    M + G+     T+ TL 
Sbjct: 126 AAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLA 185

Query: 263 RGLIQSDMLRTWRRL 277
            GL + + L   + L
Sbjct: 186 CGLCRVNRLDEAKTL 200


>gi|147790305|emb|CAN63320.1| hypothetical protein VITISV_026425 [Vitis vinifera]
          Length = 722

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 125/267 (46%), Gaps = 11/267 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y    +  C+ N+   A   L  M+E+G+ P  V+YN +LNG CR          E  I
Sbjct: 400 VYNIYFHCLCRENKSGEALSLLQSMVEKGLVPTNVSYNTILNGFCR----------ENHI 449

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++FD        PDV SF+ +L    +     +    L  M+ +G+   V + + +
Sbjct: 450 DEALQLFDHFEWANNSPDVVSFNTILSAACKQGNSSMIRRVLYRMEYEGVKLNVVSSTCL 509

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C+ G+I +  ELL  M+RNG+ P+  T+N    +         A +++R+ +  G 
Sbjct: 510 IQYFCAIGKISECLELLESMIRNGLNPTVVTFNMLLDKLCKNGLLGTAHRIFREFRNTGY 569

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  SYNILI   +      +V ++  D+    L PD  +Y   I GLC++ K   A 
Sbjct: 570 -FPNTTSYNILIHASIREGNDSLVEQLLRDMYSWRLKPDAVTYGSFIKGLCKEGKISVAI 628

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           Q   +M+E GL P    + T+   + Q
Sbjct: 629 QLRDQMLESGLTPTVTIYNTILAAMFQ 655



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 86/189 (45%), Gaps = 11/189 (5%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T LI  +C I +I      L  MI  G+ P VVT+N+LL+ +C+   L            
Sbjct: 507 TCLIQYFCAIGKISECLELLESMIRNGLNPTVVTFNMLLDKLCKNGLLG----------T 556

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A ++F E R  G  P+ TS++I++H   R     L    L  M    + P   TY S +K
Sbjct: 557 AHRIFREFRNTGYFPNTTSYNILIHASIREGNDSLVEQLLRDMYSWRLKPDAVTYGSFIK 616

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  G+I  A +L  +M+ +G+ P+   YN        R      + L + M  DG C 
Sbjct: 617 GLCKEGKISVAIQLRDQMLESGLTPTVTIYNTILAAMFQRGKFWDIVSLLKDMTMDG-CE 675

Query: 183 PNMHSYNIL 191
           PN  S  IL
Sbjct: 676 PNAVSIEIL 684



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 137/324 (42%), Gaps = 41/324 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR-------------- 47
           YT ++   C   RI  A   LG+M + G +P++VTYNV+L  +  +              
Sbjct: 296 YTVIVKFLCDEGRIGDALDILGKMGKEGCDPDIVTYNVILRELFHQDRYVEIGELLQVID 355

Query: 48  -----------ASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                      A+L         +R A K+   +   G   DV  ++I  H   R ++  
Sbjct: 356 QKEISPDSFTYAALTGGLLKRGQVRVANKLLLYVISAGCTVDVAVYNIYFHCLCRENKSG 415

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L  L  M EKG+ PT  +Y++++   C    I++A +L          P   ++N   
Sbjct: 416 EALSLLQSMVEKGLVPTNVSYNTILNGFCRENHIDEALQLFDHFEWANNSPDVVSFNTIL 475

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                + +++   ++  +M+ +G+ + N+ S   LI  F A+ ++    E+   +  +GL
Sbjct: 476 SAACKQGNSSMIRRVLYRMEYEGVKL-NVVSSTCLIQYFCAIGKISECLELLESMIRNGL 534

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ-------SD 269
            P + ++ ML+  LC+      A + F E    G  P   ++  L    I+         
Sbjct: 535 NPTVVTFNMLLDKLCKNGLLGTAHRIFREFRNTGYFPNTTSYNILIHASIREGNDSLVEQ 594

Query: 270 MLR---TWRRLKKKLDEESITFGS 290
           +LR   +WR     L  +++T+GS
Sbjct: 595 LLRDMYSWR-----LKPDAVTYGS 613



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 5/206 (2%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   ++  G   +  S++ +++ +S+    + +   L+ MK  G  P V TY+ +V
Sbjct: 241 TALALLYSLKKMGAVHNAASYTALVYGFSKEGLWEEAFCMLDEMKIDGCKPNVITYTVIV 300

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE--YRGRKDANGAMKLYRQMKEDG 179
           K LC  GRI DA ++LG+M + G  P   TYN   +E  ++ R    G +      KE  
Sbjct: 301 KFLCDEGRIGDALDILGKMGKEGCDPDIVTYNVILRELFHQDRYVEIGELLQVIDQKEIS 360

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              P+  +Y  L G  +   ++ +  ++   V  +G   D+  Y +  H LC + K  EA
Sbjct: 361 ---PDSFTYAALTGGLLKRGQVRVANKLLLYVISAGCTVDVAVYNIYFHCLCRENKSGEA 417

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGL 265
                 M+EKGL+P  V++ T+  G 
Sbjct: 418 LSLLQSMVEKGLVPTNVSYNTILNGF 443



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/327 (19%), Positives = 132/327 (40%), Gaps = 33/327 (10%)

Query: 2   YTSLIYGWCK------INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER 55
           Y +L+Y + K      I   ++ + + G M   G  PN  T+N+LL+G+    +L  +  
Sbjct: 81  YNALLYHYLKSSSRHLIVLDELVQVYFG-MKRLGPYPNASTFNILLDGMTSTGNLRAAFF 139

Query: 56  FEK-------------------------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           F +                         ++ ++  VF+ M      P   + ++++ + S
Sbjct: 140 FAEEMWRSGFLPSFTSLLKILKKWLGLGSLVDSMSVFEFMLRLEYFPTEPTLNLLISMLS 199

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
           +A   + +      +  KG      +Y+ ++  LC CG+   A  LL  + + G   +A 
Sbjct: 200 KAGMAREAHFVFRVLLGKGCLKCAHSYNPILWALCKCGQSYTALALLYSLKKMGAVHNAA 259

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
           +Y      +        A  +  +MK DG C PN+ +Y +++       R+    +I   
Sbjct: 260 SYTALVYGFSKEGLWEEAFCMLDEMKIDG-CKPNVITYTVIVKFLCDEGRIGDALDILGK 318

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           +   G  PD+ +Y +++  L  + ++ E  +    + +K + P   T+  L  GL++   
Sbjct: 319 MGKEGCDPDIVTYNVILRELFHQDRYVEIGELLQVIDQKEISPDSFTYAALTGGLLKRGQ 378

Query: 271 LRTWRRLKKKLDEESITFGSEFQNYHF 297
           +R   +L   +     T      N +F
Sbjct: 379 VRVANKLLLYVISAGCTVDVAVYNIYF 405



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S I G CK  +I +A +   +M+E G+ P V  YN +L  + +R       +F   + 
Sbjct: 611 YGSFIKGLCKEGKISVAIQLRDQMLESGLTPTVTIYNTILAAMFQRG------KFWDIV- 663

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
               +  +M + G EP+  S  I+    S+
Sbjct: 664 ---SLLKDMTMDGCEPNAVSIEILKQAMSK 690


>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
 gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
          Length = 1039

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 141/288 (48%), Gaps = 12/288 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G C+   +  A   L  M++ G  PN+ TY +L+ G+C+   +H          
Sbjct: 256 YTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIH---------- 305

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  + DEM  RG+ P V +++ ++  Y ++ + + +L     M+  G  P   TY+S++
Sbjct: 306 DARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLI 365

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+ ++AEELL   +  G  P+  T+      Y   +  + A+++ + +     C
Sbjct: 366 HGLCG-GKPDEAEELLNGAIARGFSPTVITFTNIINGYCKAEKIDDALRV-KSIMISSKC 423

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++ +Y +LI + +  +R+   ++  N++  +GL P++  YT +I   C+  K   A +
Sbjct: 424 KLDLQAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALE 483

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
            F     +G  P   T+ +L  GLIQ   L     L  K+ E+ IT G
Sbjct: 484 VFKLTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPG 531



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 146/317 (46%), Gaps = 42/317 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSL+ G+ K    + A   + +M+  G + +  TY+VLL  +C+          +K + 
Sbjct: 602 YTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCK----------QKKLN 651

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D+M +RG++ ++ +++I++    +  +   +    N M   G  P+  TY+  +
Sbjct: 652 EALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFI 711

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GRIE+A  L+GEM RNGV P   TYN F          + A    ++M  D  C
Sbjct: 712 SSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMI-DASC 770

Query: 182 VPNMHSYNILIGMFMALN----------------RMDMVREIWNDVKGSGLGPDLDSYTM 225
            PN  +Y +L+  F+ ++                ++D V ++   +   GL P   +Y+ 
Sbjct: 771 EPNYWTYWLLLKHFLKMSLANAHYVDTSGMWNWIKLDTVWQLLERMVKHGLNPTAVTYSS 830

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ--SDMLRTWRRLKKKLDE 283
           +I G C+  + +EAC     M+ K + P     E +Y  LI+   D+         KL E
Sbjct: 831 IIAGFCKATRLEEACVLLDHMLGKDISPN----EEIYTMLIKCCCDI---------KLFE 877

Query: 284 ESITFGSEFQNYHFKPY 300
           ++ +F +      F+P+
Sbjct: 878 KAASFVTNMIECGFQPH 894



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 128/263 (48%), Gaps = 14/263 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLIYG  +  ++  A   + +M E G+ P V+TY  L+ G C++        F+    
Sbjct: 500 YSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKK------HEFD---- 549

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA ++F+ M   G+ PD  +++++     ++ + +   +  +F+ +KG+  T  TY+S+V
Sbjct: 550 NAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAE---EAYSFLVKKGVVLTKVTYTSLV 606

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G  E A  L+ +MV  G    + TY+   +    +K  N A+ +  QM   G+ 
Sbjct: 607 DGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRGV- 665

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+ +Y I+I   +   + D  + ++N++  SG  P   +YT+ I   C+  + +EA  
Sbjct: 666 KGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGH 725

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
              EM   G+ P  VT+     G
Sbjct: 726 LIGEMERNGVAPDVVTYNVFING 748



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 133/296 (44%), Gaps = 28/296 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I  +CK   + +A R+   + E G+E +  T N LL G CR   L          R
Sbjct: 186 YNTMIMAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRTGDL----------R 235

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M + G   +  S++I++         + +L  L  M + G  P + TY+ ++
Sbjct: 236 KACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLI 295

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGR-KDANGAMKLYRQMKED 178
           + LC  GRI DA  LL EM R GV PS  TYN     Y   GR KDA G     + + E 
Sbjct: 296 RGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALG----IKTLMEG 351

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
             C P+  +YN LI       + D   E+ N     G  P + ++T +I+G C+ +K  +
Sbjct: 352 NGCNPDDWTYNSLIHGLCG-GKPDEAEELLNGAIARGFSPTVITFTNIINGYCKAEKIDD 410

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           A +     ++  ++  K   +    G++ S +++     K +L E   T    F N
Sbjct: 411 ALR-----VKSIMISSKCKLDLQAYGVLISVLIK-----KHRLKEAKDTLNEIFAN 456



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 127/295 (43%), Gaps = 30/295 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           Y SLI+G C   + D AE  L   I RG  P V+T+  ++NG C+   +  + R +    
Sbjct: 361 YNSLIHGLCG-GKPDEAEELLNGAIARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMI 419

Query: 60  -----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  ++ A+   +E+   G+ P+V  ++ ++  Y +  +  
Sbjct: 420 SSKCKLDLQAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVG 479

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+     + +G  P   TYSS++  L    ++  A  L+ +M  +G+ P   TY    
Sbjct: 480 AALEVFKLTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLI 539

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           +    + + + A +L+  M+++GL  P+  +YN+L     AL +     E ++ +   G+
Sbjct: 540 QGQCKKHEFDNAFRLFEMMEQNGL-TPDEQAYNVLTD---ALCKSGRAEEAYSFLVKKGV 595

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
                +YT L+ G  +    + A     +M+ +G      T+  L + L +   L
Sbjct: 596 VLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKL 650



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 120/306 (39%), Gaps = 62/306 (20%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT  I  +CKI RI+ A   +GEM   GV P+VVTYNV +NG      +  +    K + 
Sbjct: 707 YTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMI 766

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVY-----SRAHQPQLS-------LDK----LNFM 105
           +A            EP+  ++ ++L  +     + AH    S       LD     L  M
Sbjct: 767 DAS----------CEPNYWTYWLLLKHFLKMSLANAHYVDTSGMWNWIKLDTVWQLLERM 816

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
            + G+ PT  TYSS++   C   R+E+A  LL  M+   + P+ E Y    K     K  
Sbjct: 817 VKHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLF 876

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
             A      M E                                     G  P L+SY  
Sbjct: 877 EKAASFVTNMIE------------------------------------CGFQPHLESYHY 900

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           LI GLC++  + +A   F +++E      +V ++ L  GL+++  +    +L   ++   
Sbjct: 901 LITGLCDEGDYDKAKALFCDLLEMDYNHNEVAWKILNDGLLKAGHVDICSQLLSAMENRH 960

Query: 286 ITFGSE 291
               SE
Sbjct: 961 CRIDSE 966



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 8/169 (4%)

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+  ++ L      E   +L  ++V+ G+ P   TYN     Y        A + +R ++
Sbjct: 151 YNLALRSLLRFDMTEHMGKLYSQLVQEGLLPDTVTYNTMIMAYCKEGSLAIAHRYFRLLR 210

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD--SYTMLIHGLCEKQ 234
           E G+    M +Y     +       D+ +  W  +    +G   +  SYT+LI GLCE +
Sbjct: 211 ESGM---EMDTYTCNALLLGYCRTGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETR 267

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
             +EA    + M++ G  P   T+  L RGL +   +   R L   LDE
Sbjct: 268 CVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVL---LDE 313



 Score = 37.4 bits (85), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC 45
           +YT LI   C I   + A  F+  MIE G +P++ +Y+ L+ G+C
Sbjct: 862 IYTMLIKCCCDIKLFEKAASFVTNMIECGFQPHLESYHYLITGLC 906


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 127/264 (48%), Gaps = 12/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           YT+LI G CK+ R+D A     +M+   G  PN  TYN L++G+C++  L          
Sbjct: 49  YTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDA-------- 100

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  V  E R R   PDV +++ ++    +  +   +L     M E+G  PT+ +++++
Sbjct: 101 --ARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAI 158

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   R+ DA E+  EM+     P+  TY+            + A +L  +M  +G 
Sbjct: 159 ITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEG- 217

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P++ +Y  L+  F A  R+D    +   +   G  PD+ +YT++I  LC+  +  +A 
Sbjct: 218 CRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAH 277

Query: 241 QYFVEMIEKGLLPQKVTFETLYRG 264
           + F E++     P  VT+  L  G
Sbjct: 278 EIFRELVANKCSPNVVTYSALIGG 301



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 130/268 (48%), Gaps = 14/268 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G CK +R+D A   + E  +R   P+VVTYN L+      A+L    R ++ + 
Sbjct: 85  YNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLM------AALFQLGRVDEAL- 137

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                F +M   G  P + SF+ ++    RA +   +L+  N M ++   P + TYS V+
Sbjct: 138 ---ATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVI 194

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   ++++A++LL  MV  G  P    Y      +      + A+ L R+M   G C
Sbjct: 195 DGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQG-C 253

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y ++I     + R+D   EI+ ++  +   P++ +Y+ LI G C   +  E  +
Sbjct: 254 IPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGK 313

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              EM  +   P  VT+ T+  GL   D
Sbjct: 314 VMREMACR---PNVVTYNTMIWGLSMVD 338



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 115/231 (49%), Gaps = 18/231 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + ++I G C+  R+  A     EMI+R   PN+VTY+V+++G+C+   L           
Sbjct: 155 FNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLD---------- 204

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++ D M   G  PD+ +++ ++  +S A +   +L  L  M  +G  P V TY+ V+
Sbjct: 205 EAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVI 264

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDG 179
             LC  GR++DA E+  E+V N   P+  TY+     Y    R D  G  K+ R+M    
Sbjct: 265 DKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGG--KVMREMA--- 319

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
            C PN+ +YN +I     ++R +    ++ ++   G  PD  +Y  L   L
Sbjct: 320 -CRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRAL 369



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 105/217 (48%), Gaps = 3/217 (1%)

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSVVKCLCSCG 128
           M V G++ +  + SI+L    R  +   +L+  +   E     P V +Y++++  LC  G
Sbjct: 1   MDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLG 60

Query: 129 RIEDAEELLGEMVRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
           R++ A +L  +MV  G C P+A TYN        +   + A  +  + ++     P++ +
Sbjct: 61  RVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDF-APDVVT 119

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           YN L+     L R+D     +  +   G  P L S+  +I GLC  ++  +A + F EMI
Sbjct: 120 YNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMI 179

Query: 248 EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
           ++   P  VT+  +  GL +SD L   ++L  ++  E
Sbjct: 180 DRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSE 216


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 132/271 (48%), Gaps = 17/271 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI G C I R+D A   L +M++R  +P VVT N L++G+C+             I+
Sbjct: 510 YSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGR----------IK 559

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V D M   G  PDV +++ ++H + RA Q + + + L+ M  +G+ P V TY+++V
Sbjct: 560 EAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALV 619

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R+ +A  +  +M  +G  P+  TY      +      +G +KL+ +M   G+ 
Sbjct: 620 SGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGIS 679

Query: 182 VPNMHSYNILIGMFMALNR----MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            P+   Y  L        R    ++++RE    ++    G ++  Y   + GL E  K +
Sbjct: 680 -PDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEV--YRFAVDGLLEAGKME 736

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            A  +  +M+  G LP      +L  GL +S
Sbjct: 737 MALGFVRDMVRGGQLPAPERCASLVAGLCKS 767



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 134/287 (46%), Gaps = 24/287 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G  K  +++ A     +++  GV P+ V Y  L++G+C             +  
Sbjct: 326 YGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLC----------MANSFD 375

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F +M  RG  P   ++++++    +    + + D +  M E G  P V TY++V+
Sbjct: 376 DARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVM 435

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-----------RGRKDANGAMK 170
             LC   R+E+A  L  EM R G  P+  ++N                 RG+ D   A +
Sbjct: 436 DGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDE--AFR 493

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           L ++M +DG  VP++ +Y+ LI    ++ R+D  R +  D+      P + +   LIHGL
Sbjct: 494 LLKRMTDDGH-VPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGL 552

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           C+  + KEA +    M+  G  P  VT+ TL  G  ++      R L
Sbjct: 553 CKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERAREL 599



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 130/279 (46%), Gaps = 20/279 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI+G C  N  D A     +M  RG  P+ VTYNV+++  C+R  L           
Sbjct: 361 YTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLE---------- 410

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +M   G  PDV +++ V+    ++ + + +L   N M+  G  P   ++++++
Sbjct: 411 EACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTII 470

Query: 122 KCLC-------SC--GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
             LC       +C  G++++A  LL  M  +G  P   TY+            + A  L 
Sbjct: 471 LGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLL 530

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
             M +   C P + + N LI       R+   RE+ + +  SG  PD+ +Y  L+HG C 
Sbjct: 531 EDMVKRQ-CKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCR 589

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
             + + A +   +M+ +GL P  VT+  L  GL +++ L
Sbjct: 590 AGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRL 628



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 133/301 (44%), Gaps = 41/301 (13%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF-------- 56
           L+ G+C   ++D A   L  M +    P+ V+Y  +L+G+C+   +  + R         
Sbjct: 218 LLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPS 277

Query: 57  -----------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93
                                     I  A ++F++M  R + PD  S+ I++   ++A 
Sbjct: 278 SSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAG 337

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           +   + +    +   G+ P+   Y+S++  LC     +DA EL  +M R G  PS  TYN
Sbjct: 338 KLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYN 397

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
                   R     A  L ++M EDG  VP++ +YN ++      +R++    ++N+++ 
Sbjct: 398 VMIDASCKRGMLEEACDLIKKMIEDGH-VPDVVTYNTVMDGLCKSSRVEEALLLFNEMER 456

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQ---------YFVEMIEKGLLPQKVTFETLYRG 264
            G  P+  S+  +I GLC++ K  +ACQ             M + G +P  VT+ TL  G
Sbjct: 457 LGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISG 516

Query: 265 L 265
           L
Sbjct: 517 L 517



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 132/292 (45%), Gaps = 24/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+++ G CK  ++D AE  + EM  R + P   T + L + +C R S+           
Sbjct: 82  FTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSM----------- 130

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             E+ F  + +  +  + ++++IV+    +A +   +L+    M EK I     +  SV+
Sbjct: 131 --ERAFQLLEIMPV-ANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVL 187

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GRI++A ++  E  R    P   T N   + +  R   + A +L R M ++  C
Sbjct: 188 VGLMDSGRIDEALQVYRENRRE---PCLVTLNVLLEGFCSRGQVDKARELLRAMPDEE-C 243

Query: 182 VPNMHSYNILIGMFMALNRMDMV------REIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            P+  SY  ++       R++        RE+ +    S   P L  Y ++I GLC+  +
Sbjct: 244 APDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDR 303

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             EA Q F +M E+ + P   ++  L  GL ++  L   R L +KL    +T
Sbjct: 304 IDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVT 355



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 133/306 (43%), Gaps = 33/306 (10%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           S++ G     RID A   L    E   EP +VT NVLL G C R  +  +    + + + 
Sbjct: 185 SVLVGLMDSGRIDEA---LQVYRENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDE 241

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL------DKLNFMKEKGICPTVATY 117
           E            PD  S+  VL    +A + + ++      +  +        P++  Y
Sbjct: 242 E----------CAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGY 291

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + V+  LC   RI++A ++  +M    V P + +Y             N A  L++++  
Sbjct: 292 NIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLH 351

Query: 178 DGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
            G+  P+  +Y  LI G+ MA N  D  RE++ D+   G  P   +Y ++I   C++   
Sbjct: 352 SGV-TPSTVAYTSLIHGLCMA-NSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGML 409

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYH 296
           +EAC    +MIE G +P  VT+ T+  GL +S  +           EE++   +E +   
Sbjct: 410 EEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRV-----------EEALLLFNEMERLG 458

Query: 297 FKPYRR 302
             P RR
Sbjct: 459 CTPNRR 464



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 107/261 (40%), Gaps = 21/261 (8%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMR-VRGIEPDVTSFS 83
           M ++G+ P  + +  ++ G C     +    FE     A K+F  M       PDV  ++
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWC-----NVGRTFE-----AVKIFSLMEECHSPYPDV--YN 48

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
           +++   S+  + +     +  M ++G  P   T+++++  LC  G++++AE ++ EM   
Sbjct: 49  VLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSR 108

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
            + P   T +    E   R     A +L   M      V N  +YNI++       R+D 
Sbjct: 109 MIPPYFATSSFLAHELCLRGSMERAFQLLEIMP-----VANSSAYNIVVVALCKAARVDD 163

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             E+   +    +     S   ++ GL +  +  EA Q + E   +   P  VT   L  
Sbjct: 164 ALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRRE---PCLVTLNVLLE 220

Query: 264 GLIQSDMLRTWRRLKKKLDEE 284
           G      +   R L + + +E
Sbjct: 221 GFCSRGQVDKARELLRAMPDE 241


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 141/286 (49%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+L+ G C   ++D       +M+ RG++PNV TYNV++N + +    + +  F   ++
Sbjct: 135 FTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGF---LK 191

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             EKV       G  P+V ++S ++  Y    Q   +    + M  KG  P V TY+S++
Sbjct: 192 QMEKV-------GCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLM 244

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RIE+A +LL E +R G+ P   T+               A +L+R +   G  
Sbjct: 245 NGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGH- 303

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y +L+        ++    ++ +++ S + P+L  YT+LI  LC+  K K+  +
Sbjct: 304 TPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKE 363

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            F  +I++GL P   T+  L   L +  ++    +L +K++E+  T
Sbjct: 364 LFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCT 409



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 130/244 (53%), Gaps = 11/244 (4%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M+ R   P +V ++ L + + R         +E  +  ++    E+   GIE D+ S SI
Sbjct: 53  MLLRKPLPCIVEFSKLFSSIVRMG------HYETVVYLSK----EIEFLGIEQDIHSLSI 102

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           +++ +   H+    L  L+ + + G+ P++ T+++++  LC  G+++    L  +M+  G
Sbjct: 103 LINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRG 162

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           + P+  TYN           AN A+   +QM++ G CVPN+ +Y+ LI  +    +MD  
Sbjct: 163 LQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVG-CVPNVVNYSTLIDGYCLRGQMDEA 221

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           R +++ +   G  P++ +YT L++G C+ ++ +EA Q   E + KGL+P  VTF T+  G
Sbjct: 222 RSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISG 281

Query: 265 LIQS 268
           L ++
Sbjct: 282 LCRA 285



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 114/225 (50%), Gaps = 11/225 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSL+ G+CKI RI+ A + L E + +G+ P++VT+  +++G+CR     P         
Sbjct: 240 YTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAG--RPLA------- 290

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++F  +   G  P++ ++ ++L    +    + +      M+   + P +  Y+ ++
Sbjct: 291 -AQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILI 349

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC CG+I+D +EL   ++  G+ P+  TY               A KL+R+M+EDG C
Sbjct: 350 DSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDG-C 408

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
            P+  +YN++I  F+      M R++  ++   G   D  +  +L
Sbjct: 409 TPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAATRALL 453



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 120/256 (46%), Gaps = 11/256 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI G+C   ++D A      M+ +G  PNV TY  L+NG C+       ER E+ + 
Sbjct: 205 YSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCK------IERIEEAV- 257

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++ DE   +G+ PD+ +F+ ++    RA +P  +     ++   G  P + TY  ++
Sbjct: 258 ---QLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLL 314

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +E+A  L  EM R+ V P+   Y                 +L+ ++ ++GL 
Sbjct: 315 DGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGL- 373

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+++Y  L+G       +    +++  ++  G  PD  +Y ++I G  + +    A Q
Sbjct: 374 KPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQ 433

Query: 242 YFVEMIEKGLLPQKVT 257
              EM+ +G      T
Sbjct: 434 LVEEMVNRGFSADAAT 449



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 10/116 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI   CK  +I   +     +I+ G++PNV TY  L+  +C+          E  I
Sbjct: 344 IYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCK----------EGLI 393

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
             A K+F +M   G  PD  ++++++  + +   P ++   +  M  +G     AT
Sbjct: 394 IEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAAT 449


>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
 gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 701

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 138/296 (46%), Gaps = 27/296 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKTI 60
           +TSLI G CK   I  A   L EM+  G +PNV T+  L++G+C+R     + R F K +
Sbjct: 290 FTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLV 349

Query: 61  RN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           R+                         AE +F  M+ +G+ P+V +++ +++ + +A   
Sbjct: 350 RSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSF 409

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             + + +N M ++G  P + TY++ +  LC   R  +A ELL +    G+     TY   
Sbjct: 410 GRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTIL 469

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            +E   + D N A+  + +M + G    +M   NILI  F    +M     ++  V   G
Sbjct: 470 IQEQCKQNDINQALAFFCRMNKTGF-EADMRLNNILIAAFCRQKKMKESERLFQLVVSLG 528

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           L P  ++YT +I   C++     A +YF  M   G +P   T+ +L  GL +  M+
Sbjct: 529 LIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMV 584



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 118/251 (47%), Gaps = 10/251 (3%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           I+ AE    EM  RGV P+  +Y +++ G  R          +  I+ A++    M  RG
Sbjct: 198 IEYAENVFDEMSVRGVVPDSSSYKLMVIGCFR----------DGKIQEADRWLTGMIQRG 247

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
             PD  + +++L           ++     M + G  P +  ++S++  LC  G I+ A 
Sbjct: 248 FIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAF 307

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           E+L EMVRNG  P+  T+         R     A +L+ ++       PN+H+Y  +IG 
Sbjct: 308 EMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGG 367

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
           +   ++++    +++ +K  GL P++++YT LI+G C+   +  A +    M ++G +P 
Sbjct: 368 YCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPN 427

Query: 255 KVTFETLYRGL 265
             T+      L
Sbjct: 428 IYTYNAAIDSL 438



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 115/261 (44%), Gaps = 12/261 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++ G  +  +I  A+R+L  MI+RG  P+  T  ++L  +C              + 
Sbjct: 220 YKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENG----------LVN 269

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A   F +M   G +P++ +F+ ++    +    + + + L  M   G  P V T+++++
Sbjct: 270 RAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALI 329

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             LC  G  E A  L  ++VR+    P+  TY      Y      N A  L+ +MKE GL
Sbjct: 330 DGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGL 389

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+++Y  LI             E+ N +   G  P++ +Y   I  LC+K +  EA 
Sbjct: 390 -FPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAY 448

Query: 241 QYFVEMIEKGLLPQKVTFETL 261
           +   +    GL    VT+  L
Sbjct: 449 ELLNKAFSCGLEADGVTYTIL 469



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 116/301 (38%), Gaps = 47/301 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           YT+LI G CK      A   +  M + G  PN+ TYN  ++ +C+++    +        
Sbjct: 396 YTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAF 455

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +  I  A   F  M   G E D+   +I++  + R  + +
Sbjct: 456 SCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMK 515

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            S      +   G+ PT  TY+S++ C C  G I+ A +    M R+G  P + TY    
Sbjct: 516 ESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLI 575

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNM------HSY---NILIGMFMALNRMDMVREI 207
                +   + A KLY  M + GL  P +      + Y   N      + L  +D  +++
Sbjct: 576 SGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLD--KKL 633

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           W           + +   L+  LC ++K   A  +F +++EK     +VT         +
Sbjct: 634 W-----------IRTVRTLVRKLCSEKKVGVAALFFQKLLEKDSSADRVTLAAFTTACSE 682

Query: 268 S 268
           S
Sbjct: 683 S 683



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 7/180 (3%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M+ +G+ P+  T + V++     G IE AE +  EM   GV P + +Y            
Sbjct: 173 MQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGK 232

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV-REIWNDVKGSGLG--PDLD 221
              A +    M + G  +P+  +  +++    AL    +V R IW   K   LG  P+L 
Sbjct: 233 IQEADRWLTGMIQRGF-IPDNATCTLIL---TALCENGLVNRAIWYFRKMIDLGFKPNLI 288

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           ++T LI GLC+K   K+A +   EM+  G  P   T   L  GL +        RL  KL
Sbjct: 289 NFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKL 348



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 22/202 (10%)

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGI--CPTVATYSSVVKCLC----SCG----------RI 130
           HV S  H+  L  D  +   E+ I    ++A+ S  +  LC    + G           +
Sbjct: 72  HVVSSPHRVNLDFDANSLTHEQAITVVASLASESGSMVALCFFYWAVGFEKFRHFMRLYL 131

Query: 131 EDAEELLGEMVRNGVCPSA-ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
             A+ LL     NG    A E   C  + +      N A+ +   M+  GL  P+  + N
Sbjct: 132 VTADSLLA----NGNLQKAHEVMRCMLRNFSEIGRLNEAVGMVMDMQNQGL-TPSSITMN 186

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            ++ + + L  ++    +++++   G+ PD  SY +++ G     K +EA ++   MI++
Sbjct: 187 CVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQR 246

Query: 250 GLLPQKVTFETLYRGLIQSDML 271
           G +P   T   +   L ++ ++
Sbjct: 247 GFIPDNATCTLILTALCENGLV 268


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 145/281 (51%), Gaps = 13/281 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ G CK  R+D A     EM+++GV  NVVTY VL++G+C+          E  + 
Sbjct: 337 YTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCK----------EGKVA 386

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE VF  M   GI  +   ++ ++H +      + +L  L+ MK+KG+   V+ Y +++
Sbjct: 387 EAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALI 446

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETY-NCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             LC+  ++++A+ LL +M   G+ P+   Y N     ++ RK++  A+ L ++M + G 
Sbjct: 447 WGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESE-AIALLQKMMDSGF 505

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+ +Y  L+        +D     +N +   GL P++ +YT L+ GLC+  +  +A 
Sbjct: 506 -RPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAV 564

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
               EMI+KG+    V   +L  G ++   L+    LK K+
Sbjct: 565 LLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKM 605



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 134/267 (50%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+  +CK  R++ A  +  EM   GV  NVVT++  ++  C+             +R
Sbjct: 267 YNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNG----------MVR 316

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F +MR++G++P+  +++ ++    +A +   +L   N M ++G+   V TY+ +V
Sbjct: 317 EAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLV 376

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++ +AE++   M R G+  +   Y      +   K++  A+ L  +MK+ G+ 
Sbjct: 377 DGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGME 436

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++  Y  LI     L ++D  + + N +   GL P+   YT ++    + +K  EA  
Sbjct: 437 L-DVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIA 495

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
              +M++ G  P  VT+  L  GL ++
Sbjct: 496 LLQKMMDSGFRPNIVTYCALVDGLCKA 522



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 132/298 (44%), Gaps = 22/298 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G+ K   ++  E+ +GEM   G  P+VVTYN L+N  C+        R E+   
Sbjct: 232 YNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFG------RMER--- 282

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A   F EM+  G+  +V +FS  +  + +    + ++     M+ KG+ P   TY+ +V
Sbjct: 283 -AYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLV 341

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR++DA  L  EMV+ GV  +  TY               A  ++R M+  G+ 
Sbjct: 342 DGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIR 401

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
              +    ++ G F+  N  +    + +++K  G+  D+  Y  LI GLC  QK  EA  
Sbjct: 402 ANELLYTTLIHGHFVYKNS-ERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKS 460

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
              +M E GL P  V +  +                K + + E+I    +  +  F+P
Sbjct: 461 LLNKMDECGLKPNNVIYTNIMDAC-----------FKARKESEAIALLQKMMDSGFRP 507



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 116/240 (48%), Gaps = 11/240 (4%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           + E+   PNV T+N++++ +C+          E  +  A  +   M+  G  PDV +++ 
Sbjct: 185 LFEQLPAPNVFTFNIMIDFLCK----------EGDLAEARALLARMKAIGCSPDVVTYNS 234

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           ++  Y +  + +     +  M+  G  P V TY+++V C C  GR+E A     EM R G
Sbjct: 235 LIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREG 294

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           V  +  T++ F   +        AMKL+ QM+  G+  PN  +Y  L+       R+D  
Sbjct: 295 VMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGM-KPNEVTYTCLVDGTCKAGRLDDA 353

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             + N++   G+  ++ +YT+L+ GLC++ K  EA   F  M   G+   ++ + TL  G
Sbjct: 354 LVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHG 413



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 125/283 (44%), Gaps = 13/283 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +I   CK   +  A   L  M   G  P+VVTYN L++G  +   L           
Sbjct: 197 FNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELE---------- 246

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             EK+  EMR  G  PDV +++ +++ + +  + + +      MK +G+   V T+S+ V
Sbjct: 247 EVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFV 306

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + +A +L  +M   G+ P+  TY C           + A+ L  +M + G  
Sbjct: 307 DAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQG-- 364

Query: 182 VP-NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           VP N+ +Y +L+       ++    +++  ++ +G+  +   YT LIHG    +  + A 
Sbjct: 365 VPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERAL 424

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
               EM +KG+      +  L  GL     L   + L  K+DE
Sbjct: 425 SLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDE 467



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 113/233 (48%), Gaps = 12/233 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI+G C + ++D A+  L +M E G++PN V Y  +++  C +A      +  + I
Sbjct: 441 LYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDA-CFKA-----RKESEAI 494

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              +K+ D     G  P++ ++  ++    +A     ++   N M + G+ P V  Y+++
Sbjct: 495 ALLQKMMDS----GFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTAL 550

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  LC  GR++ A  LL EM+  G+             +  + +   A  L  +M   GL
Sbjct: 551 VDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGL 610

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
            + +++ Y   +  F  LN +   RE+ +++  +G+ PD   Y  LI+  C+K
Sbjct: 611 QL-DLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINK-CQK 661



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 18/180 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G CK   ID A     +M++ G+EPNV  Y  L++G+C+        R +K + 
Sbjct: 512 YCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNG------RLDKAVL 565

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK----GICPTVATY 117
               + DEM  +G+  D    ++V       H  Q +L     +K K    G+   +  Y
Sbjct: 566 ----LLDEMIDKGMSLD----NVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGY 617

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           +  V   C+   I++A E+L EM+ NG+ P A  YNC   + +   +   A  L  +M+ 
Sbjct: 618 TCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAAILQNEMES 677



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 102/227 (44%), Gaps = 7/227 (3%)

Query: 64  EKVFDEMRVRG--IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           + V    RVR   + P+  + + +L   +R    +L+      + E+   P V T++ ++
Sbjct: 146 DAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWR----LFEQLPAPNVFTFNIMI 201

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G + +A  LL  M   G  P   TYN     Y    +     KL  +M+  G C
Sbjct: 202 DFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCG-C 260

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN L+  F    RM+     + ++K  G+  ++ +++  +   C+    +EA +
Sbjct: 261 RPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMK 320

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
            F +M  KG+ P +VT+  L  G  ++  L     L  ++ ++ +  
Sbjct: 321 LFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPL 367


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 146/323 (45%), Gaps = 41/323 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------------- 48
           Y +LI G+C+  RID A    GEM +    P++  Y  L+ G+C+               
Sbjct: 84  YAALIEGFCETGRIDEAVELFGEMDQ----PDMHMYAALVKGLCKAGRGEEGLLMLRRMK 139

Query: 49  --SLHPSER----------FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                PS R          +E+  + AE++  EM  +G+ P V + + V++ Y +  +  
Sbjct: 140 ELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMS 199

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L  L  MK +G  P V TY+++V+  C+ G++  A  LL +M   GV P A TYN   
Sbjct: 200 DALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLI 259

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           +          A +L R M+ DGL + + ++YN LI       R D    +++ ++  G+
Sbjct: 260 RGQCIDGHIESAFRLLRLMEGDGL-IADQYTYNALINALCKDGRTDQACSLFDSLETRGI 318

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  ++  LI+GLC+  K   A ++  +M+  G  P   T+ +    L           
Sbjct: 319 KPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLC---------- 368

Query: 277 LKKKLDEESITFGSEFQNYHFKP 299
            K K  +E ++F  E      KP
Sbjct: 369 -KMKGSQEGLSFIGEMLQKDVKP 390



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 117/262 (44%), Gaps = 11/262 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T++I  +CK  R+  A R L  M  RG +PNV TYN L+ G C    +H           
Sbjct: 186 TAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVH----------K 235

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  + ++MRV G+ PD  ++++++         + +   L  M+  G+     TY++++ 
Sbjct: 236 AMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALIN 295

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  GR + A  L   +   G+ P+A T+N            + A K   +M   G C 
Sbjct: 296 ALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAG-CT 354

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+ ++Y+  I     +           ++    + P   +YT++IH L +++ +    + 
Sbjct: 355 PDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVART 414

Query: 243 FVEMIEKGLLPQKVTFETLYRG 264
           + EM+  G  P  VT+ T  R 
Sbjct: 415 WGEMVSSGCNPDVVTYTTSMRA 436



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 132/342 (38%), Gaps = 78/342 (22%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI   CK  R D A      +  RG++PN VT+N L+NG+C+   +  + +F + + 
Sbjct: 290 YNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMV 349

Query: 62  NAEKVFD-------------------------EMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +A    D                         EM  + ++P   +++IV+H   +     
Sbjct: 350 SAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYG 409

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           L       M   G  P V TY++ ++  C  GR+ +AE +L EM +NGV      YN   
Sbjct: 410 LVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLM 469

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI------------------------ 192
             +      + A+ + +QM      VPN  +Y IL+                        
Sbjct: 470 DGHASIGQTDHAVSILKQMTSVA-SVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAI 528

Query: 193 ------GMFMAL----------------------NRMDMVREIWNDVKGSGLGPDLDSYT 224
                 G+F  +                       R +    + + +K   +  + D YT
Sbjct: 529 ELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYT 588

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
            L+   C+ +++ +A      MI+ G +P  ++++ L  GLI
Sbjct: 589 ALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLI 630



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 122/291 (41%), Gaps = 26/291 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G+C   ++  A   L +M   GV P+ VTYN+L+ G C    +  + R  + + 
Sbjct: 220 YNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLME 279

Query: 62  -------------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     A  +FD +  RGI+P+  +F+ +++   ++ +  
Sbjct: 280 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVD 339

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           ++   L  M   G  P   TYSS ++ LC     ++    +GEM++  V PS   Y    
Sbjct: 340 IAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVI 399

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
            +    ++     + + +M   G C P++ +Y   +  +    R++    +  ++  +G+
Sbjct: 400 HKLLKERNYGLVARTWGEMVSSG-CNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGV 458

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
             D  +Y  L+ G     +   A     +M     +P + T+  L R L++
Sbjct: 459 TVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVR 509



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 108/260 (41%), Gaps = 42/260 (16%)

Query: 36  TYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           TYN ++  +CRRA L  + R+             M   G  PD  +F+ ++  Y R +Q 
Sbjct: 13  TYNAVIRSLCRRADLASALRY----------LSLMVRSGWRPDAYTFNSLIVGYCRTNQV 62

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM----------VRNGV 145
            ++ D  + M  +G    V +Y+++++  C  GRI++A EL GEM          +  G+
Sbjct: 63  DVARDLFDKMPLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQPDMHMYAALVKGL 122

Query: 146 C---------------------PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C                     PS   Y          + A  A ++ ++M E GL  P 
Sbjct: 123 CKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGL-APC 181

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +   +I  +    RM     +   +K  G  P++ +Y  L+ G C + K  +A     
Sbjct: 182 VVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLN 241

Query: 245 EMIEKGLLPQKVTFETLYRG 264
           +M   G+ P  VT+  L RG
Sbjct: 242 KMRVCGVNPDAVTYNLLIRG 261



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 100/240 (41%), Gaps = 8/240 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR------ASLHPSER 55
           Y +L+ G   I + D A   L +M      PN  TY +LL  + R         L P+  
Sbjct: 465 YNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGV 524

Query: 56  FEKT-IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV 114
           ++   + +   +FD M+     P+  ++S +L  +S   + + +   ++ MKE  I    
Sbjct: 525 WKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNE 584

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
             Y+++V C C   R  DA  L+  M+++G  P   +Y             + A +++  
Sbjct: 585 DIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMN 644

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
            +      P+   + ++I   +     D+ RE+   ++     P   +Y ML   L +++
Sbjct: 645 SRWKDYS-PDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTEELPDRE 703


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 127/260 (48%), Gaps = 11/260 (4%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y +LI G    N ID+AE    EM   G +P+  TYN++L+ + +      S R E  + 
Sbjct: 779  YNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGK------SMRIEDML- 831

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               KV  EM  +G E    +++ ++    ++     ++D    +  +G  PT  TY  ++
Sbjct: 832  ---KVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLL 888

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              L   G+IEDAE+L  EM+  G  P+   YN     YR   +     +L++ M + G+ 
Sbjct: 889  DGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGIN 948

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             P++ SY +LIG      R++     +  +   GL PDL +Y +LIHGL    + +EA  
Sbjct: 949  -PDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVS 1007

Query: 242  YFVEMIEKGLLPQKVTFETL 261
             F +M + G+ P   T+ +L
Sbjct: 1008 LFNDMEKSGIAPNLYTYNSL 1027



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 129/260 (49%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+++   C++ R+D A     +M ++G+EP   +YN L++G  +   L+          
Sbjct: 359 YTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLN---------- 408

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F+ M + G  P+  ++ + ++ Y ++ +   ++ +   MK KGI P V   ++V+
Sbjct: 409 HALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVL 468

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+  A+ +  E+   GVCP   TY    K      +A+ AMK++ +M E   C
Sbjct: 469 YSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIET-RC 527

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++ + N LI       R +   +I++++K   L P   +Y  L+ GL  + K KE   
Sbjct: 528 VPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMH 587

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              EM      P  +T+ T+
Sbjct: 588 LLEEMNSNSYPPNLITYNTV 607



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 107/229 (46%), Gaps = 11/229 (4%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y  L+ G  K  +I+ AE    EM++ G +PN   YN+LLNG           R      
Sbjct: 884  YGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGY----------RLAGNTE 933

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               ++F  M  +GI PD+ S+++++     A +   SL     + E G+ P + TY+ ++
Sbjct: 934  KVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLI 993

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              L   GR+E+A  L  +M ++G+ P+  TYN           A  A K+Y ++ ++G  
Sbjct: 994  HGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGW- 1052

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
             PN+ +YN LIG +      D     +  +   G  P+  +Y  L + L
Sbjct: 1053 KPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPNSSTYMQLPNQL 1101



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 144/319 (45%), Gaps = 31/319 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------R 47
           YT  I    +  R + A + L +M + G +P+VVT  VL+  +C               +
Sbjct: 254 YTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMK 313

Query: 48  ASLHPSERFEKTI-----------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           AS    +R                R+  ++++ M+  G   +V +++ V+    +  +  
Sbjct: 314 ASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVD 373

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + D  + MK+KGI P   +Y+S++       R+  A EL   M  +G  P+  TY  F 
Sbjct: 374 EASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFI 433

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y    ++  A+K Y  MK  G+ VP++ + N ++       R+ M + +++++K  G+
Sbjct: 434 NYYGKSGESLKAIKRYELMKSKGI-VPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGV 492

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT----FETLYRGLIQSDMLR 272
            PD  +YTM+I    +     EA + F EMIE   +P  +      +TLY+    ++  +
Sbjct: 493 CPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWK 552

Query: 273 TWRRLKK-KLDEESITFGS 290
            +  LK+  LD    T+ +
Sbjct: 553 IFHELKEMNLDPTDCTYNT 571



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 115/257 (44%), Gaps = 12/257 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LIY   K      A      M   G+ P+V TY+VL+    +R            + 
Sbjct: 185 YNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAFGKR-----------DVE 233

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +  EM   G++P+V S++I + V  +A + + +   L  M+++G  P V T + ++
Sbjct: 234 TVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLI 293

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  GR+ DA+++  +M  +   P   TY     +     D+   ++++  MK DG  
Sbjct: 294 QILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYN 353

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+ +Y  ++     + R+D   ++++ +K  G+ P   SY  LI G  +  +   A +
Sbjct: 354 -DNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALE 412

Query: 242 YFVEMIEKGLLPQKVTF 258
            F  M   G  P   T+
Sbjct: 413 LFNHMNIHGPTPNGYTY 429



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 2/207 (0%)

Query: 55  RFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV 114
           R    +R+  +VFD M+ + ++ +V +F  +          + +   L  MKE GI    
Sbjct: 123 RAHGRVRDMAQVFDLMQRQIVKANVGTFLTIFRSLGMEGGLRSAPVALPMMKEAGIVLNS 182

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            TY+ ++  L   G   +A E+   M  +G+ PS  TY+     + G++D    + L R+
Sbjct: 183 YTYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAF-GKRDVETVVWLLRE 241

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M++ G+  PN++SY I I +     R +   +I   ++  G  PD+ + T+LI  LC+  
Sbjct: 242 MEDHGV-KPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAG 300

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETL 261
           +  +A   F +M      P +VT+ TL
Sbjct: 301 RVSDAKDVFWKMKASDQKPDRVTYITL 327



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 131/294 (44%), Gaps = 54/294 (18%)

Query: 16  DMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           DMA+ F  ++++R  V+ NV T+           ++  S   E  +R+A      M+  G
Sbjct: 130 DMAQVF--DLMQRQIVKANVGTF----------LTIFRSLGMEGGLRSAPVALPMMKEAG 177

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR--IED 132
           I  +  +++ +++   ++   + +++    M   GI P+V TYS +   + + G+  +E 
Sbjct: 178 IVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVL---MLAFGKRDVET 234

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
              LL EM  +GV P+  +Y    +          A K+ ++M+++G C P++ +  +LI
Sbjct: 235 VVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEG-CKPDVVTNTVLI 293

Query: 193 GMFMALNRMD-----------------------------------MVREIWNDVKGSGLG 217
            +     R+                                     V EIWN +K  G  
Sbjct: 294 QILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYN 353

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
            ++ +YT ++  LC+  +  EA   F +M +KG+ PQ+ ++ +L  G +++D L
Sbjct: 354 DNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRL 407



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 122/291 (41%), Gaps = 19/291 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I    K +  D A +   EMIE    P+V+  N L++      +L+ + R  +   
Sbjct: 499 YTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLID------TLYKAGRGNE--- 549

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F E++   ++P   +++ +L    R  + +  +  L  M      P + TY++V+
Sbjct: 550 -AWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVL 608

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            CLC  G +  A  +L  M   G  P   +YN              A +++ QMK+  + 
Sbjct: 609 DCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQMKK--VL 666

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP----DLDSYTMLIHGLCEKQKWK 237
            P+   Y  L  +  +  +  ++ E  + +K   L P    D  S+  L+ G+ ++   +
Sbjct: 667 APD---YTTLCTILPSFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLMEGILKRAGME 723

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
           ++ ++   +    +L        L R L +S        L KK +   ++ 
Sbjct: 724 KSIEFAENIALSRILLDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSL 774



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 130/322 (40%), Gaps = 48/322 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G  +  ++      L EM      PN++TYN +L+ +C+             + 
Sbjct: 569 YNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGE----------VN 618

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M ++G  PD++S++  LH   +  +   +      MK K + P   T  +++
Sbjct: 619 YALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQMK-KVLAPDYTTLCTIL 677

Query: 122 KCLCSCGRIEDAEELLGEMV---------------------RNGVCPSAE---------- 150
                 G + +A   L E +                     R G+  S E          
Sbjct: 678 PSFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLMEGILKRAGMEKSIEFAENIALSRI 737

Query: 151 TYNCFFKEYRGR-----KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
             + FF     R     K A  A +L ++ +  G+ +    SYN LI   +  N +D+  
Sbjct: 738 LLDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSL-KTGSYNALICGLVDENLIDVAE 796

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            +++++K  G  PD  +Y +++  + +  + ++  +   EM  KG     VT+ T+  GL
Sbjct: 797 GLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGL 856

Query: 266 IQSDMLRTWRRLKKKLDEESIT 287
           ++S ML     L  KL  E  +
Sbjct: 857 VKSKMLYEAMDLYYKLMSEGFS 878


>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 857

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 144/292 (49%), Gaps = 14/292 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I  + +  +   +   L  M +  V P+++TYN ++N  C R  L     +E  + 
Sbjct: 172 YTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINA-CARGGLD----WEGLL- 225

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNF--MKEKGICPTVATYSS 119
               +F EMR  GI+PDV +++ +L   + AH+      ++ F  M E GI P + TYS 
Sbjct: 226 ---GLFAEMRHEGIQPDVITYNTLLG--ACAHRGLGDEAEMVFRTMNESGIVPDINTYSY 280

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +V+      R+E   ELL EM   G  P   +YN   + Y        AM ++RQM+  G
Sbjct: 281 LVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAG 340

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            CV N  +Y++L+ ++    R D VR+++ ++K S   PD  +Y +LI    E   +KE 
Sbjct: 341 -CVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEV 399

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSE 291
              F +M E+ + P   T+E L     +  +    +++   ++E+ +   S+
Sbjct: 400 VTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSK 451



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 107/200 (53%), Gaps = 6/200 (3%)

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           +VFDEM   G+   V S++ +++ Y R  Q   SL+ LN MK++ + P++ TY++V+   
Sbjct: 155 EVFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINA- 213

Query: 125 CSCGRIEDAEELLG---EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           C+ G + D E LLG   EM   G+ P   TYN        R   + A  ++R M E G+ 
Sbjct: 214 CARGGL-DWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGI- 271

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++++Y+ L+  F  LNR++ V E+  +++  G  PD+ SY +L+    E    KEA  
Sbjct: 272 VPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMG 331

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F +M   G +    T+  L
Sbjct: 332 VFRQMQAAGCVANAATYSVL 351



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 124/285 (43%), Gaps = 26/285 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+  + K+NR++     L EM   G  P++ +YNVLL       S+  +    + ++
Sbjct: 278 YSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQ 337

Query: 62  NA-------------------------EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            A                           +F EM+V   +PD  +++I++ V+      +
Sbjct: 338 AAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFK 397

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
             +   + M E+ + P + TY  ++      G  EDA+++L  M   GV PS++ Y    
Sbjct: 398 EVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVI 457

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           + +        A+ ++  M E G   P + +YN LI  F           I + +  SGL
Sbjct: 458 EAFGQAALYEEALVMFNTMNEVG-SNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGL 516

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
             D+ S+  +I    +  +++EA + +VEM +    P ++T E +
Sbjct: 517 KRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAV 561



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 105/224 (46%), Gaps = 11/224 (4%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           +M E  VEPN+ TY  L+   C +  L+          +A+K+   M  +G+ P   +++
Sbjct: 405 DMAEENVEPNMQTYEGLIFA-CGKGGLY---------EDAKKILLHMNEKGVVPSSKAYT 454

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            V+  + +A   + +L   N M E G  PTV TY+S++      G  ++AE +L  M  +
Sbjct: 455 GVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNES 514

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+     ++N   + +R       A+K Y +M E   C PN  +   ++ ++ +   +D 
Sbjct: 515 GLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEM-EKANCEPNELTLEAVLSIYCSAGLVDE 573

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
             E + ++K SG+ P +  Y M++    +  +  +A      MI
Sbjct: 574 GEEQFQEIKASGILPSVMCYCMMLALYAKNDRLNDAYNLIDAMI 617



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 104/255 (40%), Gaps = 14/255 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I  + +    + A      M E G  P V TYN L++   R              +
Sbjct: 453 YTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGG----------LYK 502

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE +   M   G++ DV SF+ V+  + +  Q + ++     M++    P   T  +V+
Sbjct: 503 EAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVL 562

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              CS G +++ EE   E+  +G+ PS   Y      Y      N A  L   M    + 
Sbjct: 563 SIYCSAGLVDEGEEQFQEIKASGILPSVMCYCMMLALYAKNDRLNDAYNLIDAMIT--MR 620

Query: 182 VPNMHSY--NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           V ++H     ++ G F   +   +V  +++ +   G G  +  Y  L+  L    + + A
Sbjct: 621 VSDIHQVIGQMIKGDFDDESNWQIVEYVFDKLNSEGCGLGMRFYNALLEALWCMFQRERA 680

Query: 240 CQYFVEMIEKGLLPQ 254
            +   E  ++GL P+
Sbjct: 681 ARVLNEASKRGLFPE 695



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 58/114 (50%)

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
           S   +   FKE+  R D   +++L++ M+    C PN H + I+I +      +D  RE+
Sbjct: 97  SLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIHTIMITLLGREGLLDKCREV 156

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           ++++  +G+   + SYT +I+      ++  + +    M ++ + P  +T+ T+
Sbjct: 157 FDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTV 210


>gi|168047776|ref|XP_001776345.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672305|gb|EDQ58844.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 503

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 124/267 (46%), Gaps = 8/267 (2%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI  + ++ +++ AE  + EM ERG++PNV TYN L+ G        P  +F    
Sbjct: 211 IYNILIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYLEA---KPKRQFVV-- 265

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE + +EM   G+ PDV +F+++L  Y      + +    N MK +G+ P   +Y+++
Sbjct: 266 --AEGLIEEMEASGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTAL 323

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +         E A      + + GV P+ ETY      YR   D      +++ MK +G 
Sbjct: 324 INAYAERRCPEKAARAFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMKVEG- 382

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           CV    +Y  ++  F    R    R++  + K  G  PDL  Y ML++      +  +A 
Sbjct: 383 CVATRVTYMTILDAFQKQGRYKEARDLIEEFKNQGHKPDLMVYNMLLNSYMRGGRHVKAS 442

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +EM   G LP   T+ TL  G ++
Sbjct: 443 DILLEMKTAGFLPDSFTYCTLIYGFLR 469



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 136/286 (47%), Gaps = 21/286 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI      NR D+       +    V P+ VT++VL+N   +            ++
Sbjct: 107 VYNTLITCLTNCNRYDL--ELYHNLAFYEVFPDSVTFSVLMNSAVKGGG---------SL 155

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           +    ++ +M  RGI P V+ F   +  +  A + + +L     M++  +   V  Y+ +
Sbjct: 156 KEVWALYQDMVQRGISPSVSVFGTFIKAFCDAGRLKEALLITTEMEKLNVPFNVVIYNIL 215

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY---RGRKDANGAMKLYRQMKE 177
           +      G++E+AE L+ EM   G+ P+  TYN     Y   + ++    A  L  +M+ 
Sbjct: 216 IDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEMEA 275

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            GL  P++ ++ +L+G +      +   +++N +K  G+ P+  SYT LI+   E++  +
Sbjct: 276 SGL-YPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPE 334

Query: 238 EACQYFVEMIEK-GLLPQKVTFETL---YRGLIQSDMLRT-WRRLK 278
           +A + F EMI K G+ P   T+  L   YR     +M++  W+ +K
Sbjct: 335 KAARAF-EMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMK 379



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 99/241 (41%), Gaps = 44/241 (18%)

Query: 63  AEKVFDEMR-VRGIEP---DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            E+V    R VR  EP   D  SF+I+     R   P  +L     + +     +V  Y+
Sbjct: 50  TEQVLSFFRWVRLHEPCLCDPRSFTILFTFLGRMAMPDQALVFFGMLPKDKQFHSVHVYN 109

Query: 119 SVVKCLCSC----------------------------------GRIEDAEELLGEMVRNG 144
           +++ CL +C                                  G +++   L  +MV+ G
Sbjct: 110 TLITCLTNCNRYDLELYHNLAFYEVFPDSVTFSVLMNSAVKGGGSLKEVWALYQDMVQRG 169

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP-NMHSYNILIGMFMALNRMDM 203
           + PS   +  F K +        A+ +  +M++  L VP N+  YNILI  +  + +++ 
Sbjct: 170 ISPSVSVFGTFIKAFCDAGRLKEALLITTEMEK--LNVPFNVVIYNILIDAYGRVGQLEE 227

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCE---KQKWKEACQYFVEMIEKGLLPQKVTFET 260
              +  +++  G+ P++ +Y  LI G  E   K+++  A     EM   GL P  VTF  
Sbjct: 228 AEGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEMEASGLYPDVVTFTM 287

Query: 261 L 261
           L
Sbjct: 288 L 288


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 159/335 (47%), Gaps = 48/335 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT L+   C   +ID A + LG M ++G  P+ VTYN  L+G+C+   ++  E F++ +
Sbjct: 244 IYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVN--EAFQRLV 301

Query: 61  RNAE--------------------KVFDE-------MRVRGIEPDVTSFSIVLHVYSRAH 93
              +                    + FDE       M  R I PDV  ++I++   + A 
Sbjct: 302 MLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAG 361

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           + + +L  L+ MK+KG  P    Y++V+K LC  G +E A  L  EM++N +   + T  
Sbjct: 362 RIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQT 421

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK- 212
                   R   + AM+++ +M E G C P + +YN LI  F    R++  R +++ ++ 
Sbjct: 422 IMICGLCKRGLVDEAMQIFDEMGEHG-CDPTVMTYNALIDGFYREGRLEEARMLFHKMEM 480

Query: 213 ------------GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
                       G+    D +S   L+H +C+  +  +A +    +I+ G++P  VT+ T
Sbjct: 481 GNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNT 540

Query: 261 LYRGLIQSDMLRTWRRLKKKL-----DEESITFGS 290
           L  GL ++  L    RL K+L       + IT+G+
Sbjct: 541 LINGLCKARNLDGAVRLFKELQLKGISPDEITYGT 575



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 135/317 (42%), Gaps = 46/317 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +++        I +A      M+  G  PN  TYNVL++G+C++             
Sbjct: 174 VYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQG----------MA 223

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A K+FDEM  RGI P+V  ++++L     A +   ++  L  MK+KG  P   TY++ 
Sbjct: 224 GDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAF 283

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF---------FKE------------- 158
           +  LC  GR+ +A + L  +   G     + Y+C          F E             
Sbjct: 284 LSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNI 343

Query: 159 ----------YRGRKDAN---GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
                      RG  +A     A+     MK+ G  VP+   YN ++ +      ++   
Sbjct: 344 SPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGF-VPDTFCYNTVLKVLCDHGDLERAH 402

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            + +++  + L  D  + T++I GLC++    EA Q F EM E G  P  +T+  L  G 
Sbjct: 403 TLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGF 462

Query: 266 IQSDMLRTWRRLKKKLD 282
            +   L   R L  K++
Sbjct: 463 YREGRLEEARMLFHKME 479



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 4/208 (1%)

Query: 64  EKVFDEM---RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           E +FD +   R  G+    ++F+ ++  +S A +   ++   + M E    PT   Y+++
Sbjct: 119 EAMFDALADARAAGLPASSSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTI 178

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +K L   G I  A  L   MV  G  P+  TYN        +  A  A+K++ +M + G+
Sbjct: 179 LKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGI 238

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +PN+  Y +L+       ++D   ++   +K  G  PD  +Y   + GLC+  +  EA 
Sbjct: 239 -MPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAF 297

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           Q  V + + G       +  L  GL Q+
Sbjct: 298 QRLVMLQDGGFALGLKGYSCLIDGLFQA 325



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 7/226 (3%)

Query: 61  RNAEKV--FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           RNA+ V  F  M      P    ++ +L     +    L+L   N M   G  P  ATY+
Sbjct: 152 RNADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYN 211

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++  LC  G   DA ++  EM+  G+ P+ + Y             + A++L   MK+ 
Sbjct: 212 VLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDK 271

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G C+P+  +YN  +     + R++   +    ++  G    L  Y+ LI GL + +++ E
Sbjct: 272 G-CLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDE 330

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKKK 280
              Y+  M+E+ + P  V +  + RG  ++    D L     +KKK
Sbjct: 331 GFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKK 376



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 3/195 (1%)

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
           R+R       + S++L + S  H  +   D L   +  G+  + + ++++V    S GR 
Sbjct: 96  RLRSRPLHAHAVSLLLRLSS--HADEAMFDALADARAAGLPASSSAFAALVAAHSSAGRN 153

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
            DA +    M      P+A  YN   K          A+ LY +M   G C PN  +YN+
Sbjct: 154 ADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAG-CAPNRATYNV 212

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           L+             ++++++   G+ P++  YT+L+  LC   K  EA Q    M +KG
Sbjct: 213 LMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKG 272

Query: 251 LLPQKVTFETLYRGL 265
            LP +VT+     GL
Sbjct: 273 CLPDEVTYNAFLSGL 287



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 120/295 (40%), Gaps = 54/295 (18%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL------------ 50
           T +I G CK   +D A +   EM E G +P V+TYN L++G  R   L            
Sbjct: 421 TIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEM 480

Query: 51  --HPSERFEKTIRNAEKVFDEMRVR-------------------------GIEPDVTSFS 83
             +PS  F +    A +V D   +R                         G+ PDV +++
Sbjct: 481 GNNPS-LFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYN 539

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            +++   +A     ++     ++ KGI P   TY +++  L    R  DA  L   ++++
Sbjct: 540 TLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQS 599

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM-- 201
           G  PS   YN   +     K  + A+ L+         +P  +++ +   +    ++   
Sbjct: 600 GSSPSLSIYNSMMRSLCRMKKLSQAINLWLDY------LPKKYNFPVESEVLANAHKEIE 653

Query: 202 -----DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 251
                D VRE+    +  G     + YT+ + GLC+ ++  +A + F  + E G+
Sbjct: 654 DGSLDDGVRELIKIDQEYGYISS-NPYTIWLIGLCQVRRTDDALRIFHTLQEFGI 707


>gi|15232517|ref|NP_188138.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273407|sp|Q9LIL5.1|PP233_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15200
 gi|11994509|dbj|BAB02574.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642110|gb|AEE75631.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 132/255 (51%), Gaps = 16/255 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++ GWC +  +  A+RF  ++I     P+VV+Y  ++N + ++  L  +    + + +  
Sbjct: 253 ILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTR 312

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           +           PDV   + V+       +   +L+    + EKG  P V TY+S++K L
Sbjct: 313 R----------NPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHL 362

Query: 125 CSCGRIEDAEELLGEM-VRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
           C   R E   EL+ EM ++ G C P+  T++   K  +  KD +  ++   + K    C 
Sbjct: 363 CKIRRTEKVWELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDVDIVLERMAKNK----CE 418

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
                YN++  +++  ++ + VREIW++++ SGLGPD  +YT+ IHGL  K K  EA  Y
Sbjct: 419 MTSDLYNLMFRLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSY 478

Query: 243 FVEMIEKGLLPQKVT 257
           F EM+ KG++P+  T
Sbjct: 479 FQEMMSKGMVPEPRT 493



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 113/266 (42%), Gaps = 23/266 (8%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSE---------------RFEKT 59
           ID+ E  + E++ R        Y  +L+ +  + S+H S                RFE+ 
Sbjct: 105 IDLTEELVLEVVNRNRSDWKPAY--ILSQLVVKQSVHLSSSMLYNEILDVLGKMRRFEE- 161

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
                +VFDEM  R    +  ++ ++L+ Y+ AH+   ++      KE GI   +  +  
Sbjct: 162 ---FHQVFDEMSKRDGFVNEKTYEVLLNRYAAAHKVDEAVGVFERRKEFGIDDDLVAFHG 218

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC    +E AE L     R   C   +  N     +    + + A + ++ +    
Sbjct: 219 LLMWLCRYKHVEFAETLFCSRRREFGC-DIKAMNMILNGWCVLGNVHEAKRFWKDIIASK 277

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C P++ SY  +I       ++    E++  +  +   PD+     +I  LC K++  EA
Sbjct: 278 -CRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPDVKICNNVIDALCFKKRIPEA 336

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGL 265
            + F E+ EKG  P  VT+ +L + L
Sbjct: 337 LEVFREISEKGPDPNVVTYNSLLKHL 362



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 24/187 (12%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
            ++I   C   RI  A     E+ E+G +PNVVTYN LL  +C+             IR 
Sbjct: 321 NNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCK-------------IRR 367

Query: 63  AEKVF---DEMRVRG--IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP-TVAT 116
            EKV+   +EM ++G    P+  +FS +L    R+    + L+++     K  C  T   
Sbjct: 368 TEKVWELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDVDIVLERM----AKNKCEMTSDL 423

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+ + +      + E   E+  EM R+G+ P   TY         +     A+  +++M 
Sbjct: 424 YNLMFRLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMM 483

Query: 177 EDGLCVP 183
             G+ VP
Sbjct: 484 SKGM-VP 489


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 141/280 (50%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ G+CK  +++ A+  L  M++  ++P+VVTYN L++G C              + 
Sbjct: 274 FNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSI----------NKVN 323

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +FD M   G+  +V  ++ +++ + +      +++    M+ + I P V TYSS++
Sbjct: 324 KAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLI 383

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GRI  A +L+ EM   G  P+  TY+            + A+ L   +K+ G+ 
Sbjct: 384 DGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGI- 442

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+M++Y ILI       R++  + ++ D+   G   D+ +YT++I G C+K  + +A  
Sbjct: 443 RPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALA 502

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
              +M + G +P   T+E +   L + D   T  +L +++
Sbjct: 503 LLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREM 542



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 143/285 (50%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK+ RI  A + L  +  + V+PN V YN++++ +C+           K + 
Sbjct: 169 YGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCK----------AKLVN 218

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  ++ +M  + I PDV +++ ++  +S   +   ++D  N MK++ I P V T++ +V
Sbjct: 219 DAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILV 278

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++ DA+ +L  M+++ + P   TYN     Y      N A  ++  M   G+ 
Sbjct: 279 DGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGV- 337

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N+  Y  ++  F  +  +D    ++ +++   + P++ +Y+ LI GLC+  +   A +
Sbjct: 338 IANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALK 397

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM ++G  P  VT+ ++   L ++  +     L   L ++ I
Sbjct: 398 LVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGI 442



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 105/192 (54%), Gaps = 11/192 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+++ G+CKI  +D A     EM  R + PNVVTY+ L++G+C+             I
Sbjct: 343 IYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGR----------I 392

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+ DEM  RG  P++ ++S +L    + H    ++  L  +K++GI P + TY+ +
Sbjct: 393 FYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTIL 452

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +K LC  GR+EDA+ +  +++  G       Y    + +  +   + A+ L  +M+++G 
Sbjct: 453 IKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNG- 511

Query: 181 CVPNMHSYNILI 192
           C+PN  +Y ++I
Sbjct: 512 CIPNAKTYELVI 523



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 132/298 (44%), Gaps = 44/298 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI  + ++    ++     +++++G  P  +T+N L+ G+C +  +H +  F     
Sbjct: 99  FNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFH---- 154

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                 D++  +G   D  S+  +++   +  +   +L  L  +  K + P    Y+ ++
Sbjct: 155 ------DKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMII 208

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
             +C    + DA +L  +MV   +CP   TYN     +      N A+ L+ +MK+    
Sbjct: 209 DNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENIN 268

Query: 178 ----------DGLC--------------------VPNMHSYNILIGMFMALNRMDMVREI 207
                     DG C                     P++ +YN L+  + ++N+++  ++I
Sbjct: 269 PNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDI 328

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           ++ +   G+  ++  YT +++G C+ +   EA   F EM  + ++P  VT+ +L  GL
Sbjct: 329 FDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGL 386



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 135/281 (48%), Gaps = 11/281 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY  +I   CK   ++ A     +M+ + + P+V TYN L++G    + L+         
Sbjct: 203 MYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLN--------- 253

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F++M+   I P+V +F+I++  + +  +   +   L  M +  I P V TY+S+
Sbjct: 254 -YAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSL 312

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   CS  ++  A+++   M   GV  + + Y      +   K  + A+ L+ +M+   +
Sbjct: 313 MDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKI 372

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +PN+ +Y+ LI     L R+    ++ +++   G  P++ +Y+ ++  LC+     +A 
Sbjct: 373 -IPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAI 431

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
                + ++G+ P   T+  L +GL QS  L   + + + L
Sbjct: 432 ALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDL 472



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 125/284 (44%), Gaps = 46/284 (16%)

Query: 16  DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI 75
           ++   F   ++ +   P    +N +L+ + + A  H +         A  +  +M + GI
Sbjct: 43  NLISSFNHLLLHKNPTPPTFQFNKILSSLVK-AKHHST---------ALSLHQQMELNGI 92

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
           E D  +F+I+++ +S+     LS      + +KG  PT  T+++++K LC  G I  A  
Sbjct: 93  ESDFFTFNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALH 152

Query: 136 LLGEMVR--------------NGVC---------------------PSAETYNCFFKEYR 160
              ++V               NG+C                     P+A  YN       
Sbjct: 153 FHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMC 212

Query: 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
             K  N A  LY QM    +C P++ +YN LI  F A+++++   +++N +K   + P++
Sbjct: 213 KAKLVNDAFDLYSQMVAKRIC-PDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNV 271

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            ++ +L+ G C++ K  +A      M++  + P  VT+ +L  G
Sbjct: 272 YTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDG 315



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 91/213 (42%), Gaps = 5/213 (2%)

Query: 77  PDVTSFSIVLH--VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           P    F+ +L   V ++ H   LSL +   M+  GI     T++ ++ C    G    + 
Sbjct: 59  PPTFQFNKILSSLVKAKHHSTALSLHQQ--MELNGIESDFFTFNILINCFSQLGLNSLSF 116

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
            +  ++++ G  P+A T+N   K    +   + A+  + ++   G  +  + SY  LI  
Sbjct: 117 SIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQV-SYGTLING 175

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
              + R+    ++   V G  + P+   Y M+I  +C+ +   +A   + +M+ K + P 
Sbjct: 176 LCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPD 235

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             T+  L  G      L     L  K+ +E+I 
Sbjct: 236 VFTYNALISGFSAVSKLNYAIDLFNKMKKENIN 268


>gi|356561776|ref|XP_003549154.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 567

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 151/292 (51%), Gaps = 18/292 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++ G CKI     A   L +M++R +EPNVV YN +L+G+C+R            +  A 
Sbjct: 159 IVNGLCKIGDTSGALESLKKMVKRNLEPNVVVYNAILDGLCKRG----------LVGEAL 208

Query: 65  KVFDEMRVRGIEPDVTSFSIVLH-VYSRAHQPQLSLDKLNFM-KEKGICPTVATYSSVVK 122
            +F EM V  +EP+V +++ ++  +       +  +   N M  EKGI P V T+S +V 
Sbjct: 209 GLFYEMGVVNVEPNVVTYNCLIQGLCGEVGGWREGVGLFNEMVAEKGIVPDVQTFSILVN 268

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL-C 181
             C  G +  AE ++G M+R GV  +  TYN     Y  R     A++++  M  +G  C
Sbjct: 269 GFCKEGLLLRAESMVGFMIRIGVELNVVTYNSLISGYCLRNRMEEAVRVFDLMVREGEGC 328

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +YN LI  +  + +++    + +++ G GL PD+ ++T LI G  E  K   A +
Sbjct: 329 LPSVVTYNSLIHGWCKVKKVNKAMSLLSEMVGKGLDPDVFTWTSLIGGFFEVGKPLAAKE 388

Query: 242 YFVEMIEKGLLPQ----KVTFETLYRGLIQSDMLRTWRRLKKK-LDEESITF 288
            F+ M ++G +P      V  + LY+  + S+ +  +R ++K  LD + + +
Sbjct: 389 LFITMKDQGQVPILQTCAVVLDGLYKCWLDSEAMTLFRAMEKSGLDLDIVIY 440



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 148/287 (51%), Gaps = 18/287 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ L+ G+CK   +  AE  +G MI  GVE NVVTYN L++G C R       R E+ +R
Sbjct: 263 FSILVNGFCKEGLLLRAESMVGFMIRIGVELNVVTYNSLISGYCLR------NRMEEAVR 316

Query: 62  NAEKVFDEMRVR---GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
               VFD M VR   G  P V +++ ++H + +  +   ++  L+ M  KG+ P V T++
Sbjct: 317 ----VFDLM-VREGEGCLPSVVTYNSLIHGWCKVKKVNKAMSLLSEMVGKGLDPDVFTWT 371

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE-YRGRKDANGAMKLYRQMKE 177
           S++      G+   A+EL   M   G  P  +T        Y+   D+  AM L+R M++
Sbjct: 372 SLIGGFFEVGKPLAAKELFITMKDQGQVPILQTCAVVLDGLYKCWLDSE-AMTLFRAMEK 430

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            GL + ++  YNI++     + +++  R++ + V   GL  D  ++ ++I GLC +    
Sbjct: 431 SGLDL-DIVIYNIMLDGMCKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIKGLCREGLLD 489

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQS-DMLRTWRRLKKKLDE 283
           +A +   +M E G  P K ++    +GL++  D+ R+ + L+   D+
Sbjct: 490 DAEELLRKMKENGCPPNKCSYNVFVQGLLRKYDISRSRKYLQIMKDK 536



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 130/280 (46%), Gaps = 13/280 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +++ G CK   +  A     EM    VEPNVVTYN L+ G+C               
Sbjct: 190 VYNAILDGLCKRGLVGEALGLFYEMGVVNVEPNVVTYNCLIQGLCGEVG---------GW 240

Query: 61  RNAEKVFDEMRV-RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           R    +F+EM   +GI PDV +FSI+++ + +      +   + FM   G+   V TY+S
Sbjct: 241 REGVGLFNEMVAEKGIVPDVQTFSILVNGFCKEGLLLRAESMVGFMIRIGVELNVVTYNS 300

Query: 120 VVKCLCSCGRIEDAEELLGEMVR--NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           ++   C   R+E+A  +   MVR   G  PS  TYN     +   K  N AM L  +M  
Sbjct: 301 LISGYCLRNRMEEAVRVFDLMVREGEGCLPSVVTYNSLIHGWCKVKKVNKAMSLLSEMVG 360

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            GL  P++ ++  LIG F  + +    +E++  +K  G  P L +  +++ GL +     
Sbjct: 361 KGL-DPDVFTWTSLIGGFFEVGKPLAAKELFITMKDQGQVPILQTCAVVLDGLYKCWLDS 419

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           EA   F  M + GL    V +  +  G+ +   L   R+L
Sbjct: 420 EAMTLFRAMEKSGLDLDIVIYNIMLDGMCKMGKLNDARKL 459



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 120/266 (45%), Gaps = 13/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG--VEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           Y SLI G+C  NR++ A R    M+  G    P+VVTYN L++G C+           K 
Sbjct: 298 YNSLISGYCLRNRMEEAVRVFDLMVREGEGCLPSVVTYNSLIHGWCKV----------KK 347

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +  A  +  EM  +G++PDV +++ ++  +    +P  + +    MK++G  P + T + 
Sbjct: 348 VNKAMSLLSEMVGKGLDPDVFTWTSLIGGFFEVGKPLAAKELFITMKDQGQVPILQTCAV 407

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           V+  L  C    +A  L   M ++G+      YN            N A KL   +   G
Sbjct: 408 VLDGLYKCWLDSEAMTLFRAMEKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSFVLVKG 467

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           L + + +++NI+I        +D   E+   +K +G  P+  SY + + GL  K     +
Sbjct: 468 LKIDS-YTWNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCSYNVFVQGLLRKYDISRS 526

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGL 265
            +Y   M +KG      T E L R L
Sbjct: 527 RKYLQIMKDKGFPVDATTAELLIRFL 552



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 120/246 (48%), Gaps = 14/246 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFE-KTI 60
           Y SLI+GWCK+ +++ A   L EM+ +G++P+V T+  L+ G            FE    
Sbjct: 335 YNSLIHGWCKVKKVNKAMSLLSEMVGKGLDPDVFTWTSLIGGF-----------FEVGKP 383

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++F  M+ +G  P + + ++VL    +      ++     M++ G+   +  Y+ +
Sbjct: 384 LAAKELFITMKDQGQVPILQTCAVVLDGLYKCWLDSEAMTLFRAMEKSGLDLDIVIYNIM 443

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  +C  G++ DA +LL  ++  G+   + T+N   K        + A +L R+MKE+G 
Sbjct: 444 LDGMCKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIKGLCREGLLDDAEELLRKMKENG- 502

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN  SYN+ +   +    +   R+    +K  G   D  +  +LI  L   ++   A 
Sbjct: 503 CPPNKCSYNVFVQGLLRKYDISRSRKYLQIMKDKGFPVDATTAELLIRFLSANEE-DNAF 561

Query: 241 QYFVEM 246
           Q F+++
Sbjct: 562 QEFLQI 567



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 112/259 (43%), Gaps = 20/259 (7%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           + ++  F   M+     P +  +N+L   V +      S+ F   I     +   +   G
Sbjct: 57  VSVSVDFFHRMLTLNPFPCIQDFNLLFGIVAK------SQHFATAI----SLIKTLHSLG 106

Query: 75  IE-PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS------VVKCLCSC 127
            E  DV + +I+++   R  +  L    L  M + G+ PT+ T ++      +V  LC  
Sbjct: 107 YEIADVCTLNILINCLCRLRKTTLGFAVLGLMTKIGLEPTLVTLNTIANGLCIVNGLCKI 166

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
           G    A E L +MV+  + P+   YN        R     A+ L+ +M    +  PN+ +
Sbjct: 167 GDTSGALESLKKMVKRNLEPNVVVYNAILDGLCKRGLVGEALGLFYEMGVVNV-EPNVVT 225

Query: 188 YNILI-GMFMALNRMDMVREIWND-VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
           YN LI G+   +        ++N+ V   G+ PD+ ++++L++G C++     A      
Sbjct: 226 YNCLIQGLCGEVGGWREGVGLFNEMVAEKGIVPDVQTFSILVNGFCKEGLLLRAESMVGF 285

Query: 246 MIEKGLLPQKVTFETLYRG 264
           MI  G+    VT+ +L  G
Sbjct: 286 MIRIGVELNVVTYNSLISG 304



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 11/121 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  ++ G CK+ +++ A + L  ++ +G++ +  T+N+++ G+CR          E  +
Sbjct: 439 IYNIMLDGMCKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIKGLCR----------EGLL 488

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +AE++  +M+  G  P+  S+++ +    R +    S   L  MK+KG  P  AT + +
Sbjct: 489 DDAEELLRKMKENGCPPNKCSYNVFVQGLLRKYDISRSRKYLQIMKDKGF-PVDATTAEL 547

Query: 121 V 121
           +
Sbjct: 548 L 548


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 136/281 (48%), Gaps = 13/281 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G C   R    E  + EM+     PN+VT+N L+  +CR         FE+   
Sbjct: 219 YNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNG------LFERV-- 270

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +V  +M   G  PD+  ++ ++    +    +++ + LN M   G+ P V  Y++V+
Sbjct: 271 --HEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVL 328

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAE-TYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           K LCS  R ++AEELL EM +   CP  + T+N     +      +  ++L  QM   G 
Sbjct: 329 KGLCSAERWKEAEELLSEMFQKD-CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHG- 386

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C+P++ +Y  +I  F     +D    +   +   G  P+  SYT+++ GLC   +W +A 
Sbjct: 387 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAE 446

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +   +MI++G  P  VTF TL   L +  ++     L K++
Sbjct: 447 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM 487



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 152/341 (44%), Gaps = 61/341 (17%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC-----RRASLHPSER 55
           MY ++I G CK   +++A   L  M   G++PNVV YN +L G+C     + A    SE 
Sbjct: 288 MYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEM 347

Query: 56  FEKT--------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           F+K                     +    ++ ++M   G  PDV +++ V++ + +    
Sbjct: 348 FQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLI 407

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             ++  L  M   G  P   +Y+ V+K LCS GR  DAEEL+ +M++ G  P+  T+N  
Sbjct: 408 DEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTL 467

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY--------------------NILIGMF 195
                 +     A++L +QM  +G C P++ SY                    N+++   
Sbjct: 468 INFLCKKGLVEQAIELLKQMLVNG-CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKG 526

Query: 196 MALN---------------RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           ++ N               R++ V ++++++K + +  D   Y  +I  LC++ +   A 
Sbjct: 527 ISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAI 586

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            +F  M+  G +P + T+  L +GL    + +  + L  +L
Sbjct: 587 DFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 116/251 (46%), Gaps = 11/251 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+CK   ID A   L  M   G +PN V+Y ++L G+C                
Sbjct: 394 YTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRW----------V 443

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE++  +M  +G  P+  +F+ +++   +    + +++ L  M   G  P + +YS+V+
Sbjct: 444 DAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 503

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G+ E+A ELL  MV  G+ P+   Y+            N  ++++  +K D   
Sbjct: 504 DGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIK-DTTI 562

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +   YN +I         D   + +  +  +G  P+  +YTMLI GL  +   KEA +
Sbjct: 563 RSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQE 622

Query: 242 YFVEMIEKGLL 252
              E+  +G L
Sbjct: 623 LLSELCSRGAL 633



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 16/242 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT ++ G C   R   AE  + +MI++G  PN VT+N L+N +C++            + 
Sbjct: 429 YTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKG----------LVE 478

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++  +M V G  PD+ S+S V+    +A + + +L+ LN M  KGI P    YSS+ 
Sbjct: 479 QAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIA 538

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+    ++   +    +   A  YN        R + + A+  +  M  +G C
Sbjct: 539 CALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNG-C 597

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL--CEKQKWKEA 239
           +PN  +Y +LI    +       +E+ +++   G    L  + M   G+  C ++  K+ 
Sbjct: 598 MPNESTYTMLIKGLASEGLAKEAQELLSELCSRG---ALRKHLMRHFGISNCTQENGKQK 654

Query: 240 CQ 241
           C+
Sbjct: 655 CE 656



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 126/305 (41%), Gaps = 49/305 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G+C+  ++  A R    +    V PN  T+  ++ G+C R            I 
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAAAV---PVPPNAYTFFPVVRGLCTRGR----------IA 128

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA-------------HQPQLSLDK------L 102
           +A +V DEM  +G  P    + ++L    R+             H    +LD       L
Sbjct: 129 DALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVL 188

Query: 103 NFMKEKGIC----------------PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
           N + E+G                    + +Y++V+K LC   R  D EEL+ EMVR    
Sbjct: 189 NAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCA 248

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+  T+N                ++  QM E G C P++  Y  +I        +++  E
Sbjct: 249 PNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHG-CTPDIRMYATIIDGICKEGHLEVANE 307

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           I N +   GL P++  Y  ++ GLC  ++WKEA +   EM +K      VTF  L     
Sbjct: 308 ILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFC 367

Query: 267 QSDML 271
           Q+ ++
Sbjct: 368 QNGLV 372



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 87/209 (41%), Gaps = 4/209 (1%)

Query: 79  VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLG 138
           V +++ ++  Y RA Q   +      +    + P   T+  VV+ LC+ GRI DA E+L 
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 139 EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL 198
           EM   G  P    Y+   +          ++++   M   G C  +  + N+++      
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG-CTLDTGNCNLVLNAICEQ 194

Query: 199 NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
             +D    +   +   G   D+ SY  ++ GLC  ++W +  +   EM+     P  VTF
Sbjct: 195 GCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTF 254

Query: 259 ETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            TL   L ++ +      +  ++ E   T
Sbjct: 255 NTLIGYLCRNGLFERVHEVLAQMSEHGCT 283


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 136/281 (48%), Gaps = 13/281 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G C   R    E  + EM+     PN+VT+N L+  +CR         FE+   
Sbjct: 219 YNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNG------LFERV-- 270

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +V  +M   G  PD+  ++ ++    +    +++ + LN M   G+ P V  Y++V+
Sbjct: 271 --HEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVL 328

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAE-TYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           K LCS  R ++AEELL EM +   CP  + T+N     +      +  ++L  QM   G 
Sbjct: 329 KGLCSAERWKEAEELLSEMFQKD-CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHG- 386

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C+P++ +Y  +I  F     +D    +   +   G  P+  SYT+++ GLC   +W +A 
Sbjct: 387 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAE 446

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +   +MI++G  P  VTF TL   L +  ++     L K++
Sbjct: 447 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM 487



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 152/341 (44%), Gaps = 61/341 (17%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC-----RRASLHPSER 55
           MY ++I G CK   +++A   L  M   G++PNVV YN +L G+C     + A    SE 
Sbjct: 288 MYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEM 347

Query: 56  FEKT--------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           F+K                     +    ++ ++M   G  PDV +++ V++ + +    
Sbjct: 348 FQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLI 407

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             ++  L  M   G  P   +Y+ V+K LCS GR  DAEEL+ +M++ G  P+  T+N  
Sbjct: 408 DEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTL 467

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY--------------------NILIGMF 195
                 +     A++L +QM  +G C P++ SY                    N+++   
Sbjct: 468 INFLCKKGLVEQAIELLKQMLVNG-CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKG 526

Query: 196 MALN---------------RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           ++ N               R++ V ++++++K + +  D   Y  +I  LC++ +   A 
Sbjct: 527 ISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAI 586

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            +F  M+  G +P + T+  L +GL    + +  + L  +L
Sbjct: 587 DFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 116/251 (46%), Gaps = 11/251 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+CK   ID A   L  M   G +PN V+Y ++L G+C                
Sbjct: 394 YTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRW----------V 443

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE++  +M  +G  P+  +F+ +++   +    + +++ L  M   G  P + +YS+V+
Sbjct: 444 DAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 503

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G+ E+A ELL  MV  G+ P+   Y+            N  ++++  +K D   
Sbjct: 504 DGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIK-DTTI 562

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +   YN +I         D   + +  +  +G  P+  +YTMLI GL  +   KEA +
Sbjct: 563 RSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQE 622

Query: 242 YFVEMIEKGLL 252
              E+  +G L
Sbjct: 623 LLSELCSRGAL 633



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 16/242 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT ++ G C   R   AE  + +MI++G  PN VT+N L+N +C++            + 
Sbjct: 429 YTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKG----------LVE 478

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++  +M V G  PD+ S+S V+    +A + + +L+ LN M  KGI P    YSS+ 
Sbjct: 479 QAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIA 538

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+    ++   +    +   A  YN        R + + A+  +  M  +G C
Sbjct: 539 CALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNG-C 597

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL--CEKQKWKEA 239
           +PN  +Y +LI    +       +E+ +++   G    L  + M   G+  C ++  K+ 
Sbjct: 598 MPNESTYTMLIKGLASEGLAKEAQELLSELCSRG---ALRKHLMRHFGISNCTQENGKQK 654

Query: 240 CQ 241
           C+
Sbjct: 655 CE 656



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 126/305 (41%), Gaps = 49/305 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G+C+  ++  A R    +    V PN  T+  ++ G+C R            I 
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAAAV---PVPPNAYTFFPVVRGLCTRGR----------IA 128

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA-------------HQPQLSLDK------L 102
           +A +V DEM  +G  P    + ++L    R+             H    +LD       L
Sbjct: 129 DALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVL 188

Query: 103 NFMKEKGIC----------------PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
           N + E+G                    + +Y++V+K LC   R  D EEL+ EMVR    
Sbjct: 189 NAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCA 248

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+  T+N                ++  QM E G C P++  Y  +I        +++  E
Sbjct: 249 PNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHG-CTPDIRMYATIIDGICKEGHLEVANE 307

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           I N +   GL P++  Y  ++ GLC  ++WKEA +   EM +K      VTF  L     
Sbjct: 308 ILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFC 367

Query: 267 QSDML 271
           Q+ ++
Sbjct: 368 QNGLV 372



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 87/209 (41%), Gaps = 4/209 (1%)

Query: 79  VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLG 138
           V +++ ++  Y RA Q   +      +    + P   T+  VV+ LC+ GRI DA E+L 
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 139 EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL 198
           EM   G  P    Y+   +          ++++   M   G C  +  + N+++      
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG-CTLDTGNCNLVLNAICEQ 194

Query: 199 NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
             +D    +   +   G   D+ SY  ++ GLC  ++W +  +   EM+     P  VTF
Sbjct: 195 GCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTF 254

Query: 259 ETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            TL   L ++ +      +  ++ E   T
Sbjct: 255 NTLIGYLCRNGLFERVHEVLAQMSEHGCT 283


>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
 gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
          Length = 794

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 159/335 (47%), Gaps = 48/335 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT L+   C   +ID A + LG M ++G  P+ VTYN  L+G+C+   ++  E F++ +
Sbjct: 244 IYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVN--EAFQRLV 301

Query: 61  RNAE--------------------KVFDE-------MRVRGIEPDVTSFSIVLHVYSRAH 93
              +                    + FDE       M  R I PDV  ++I++   + A 
Sbjct: 302 MLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAG 361

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           + + +L  L+ MK+KG  P    Y++V+K LC  G +E A  L  EM++N +   + T  
Sbjct: 362 RIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQT 421

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK- 212
                   R   + AM+++ +M E G C P + +YN LI  F    R++  R +++ ++ 
Sbjct: 422 IMICGLCKRGLVDEAMQIFDEMGEHG-CDPTVMTYNALIDGFYREGRLEEARMLFHKMEM 480

Query: 213 ------------GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
                       G+    D +S   L+H +C+  +  +A +    +I+ G++P  VT+ T
Sbjct: 481 GNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNT 540

Query: 261 LYRGLIQSDMLRTWRRLKKKL-----DEESITFGS 290
           L  GL ++  L    RL K+L       + IT+G+
Sbjct: 541 LINGLCKARNLDGAVRLFKELQLKGISPDEITYGT 575



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 135/317 (42%), Gaps = 46/317 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +++        I +A      M+  G  PN  TYNVL++G+C++             
Sbjct: 174 VYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQG----------MA 223

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A K+FDEM  RGI P+V  ++++L     A +   ++  L  MK+KG  P   TY++ 
Sbjct: 224 GDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAF 283

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF---------FKE------------- 158
           +  LC  GR+ +A + L  +   G     + Y+C          F E             
Sbjct: 284 LSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNI 343

Query: 159 ----------YRGRKDAN---GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
                      RG  +A     A+     MK+ G  VP+   YN ++ +      ++   
Sbjct: 344 SPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGF-VPDTFCYNTVLKVLCDHGDLERAH 402

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            + +++  + L  D  + T++I GLC++    EA Q F EM E G  P  +T+  L  G 
Sbjct: 403 TLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGF 462

Query: 266 IQSDMLRTWRRLKKKLD 282
            +   L   R L  K++
Sbjct: 463 YREGRLEEARMLFHKME 479



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 4/208 (1%)

Query: 64  EKVFDEM---RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           E +FD +   R  G+    ++F+ ++  +S A +   ++   + M E    PT   Y+++
Sbjct: 119 EAMFDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTI 178

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +K L   G I  A  L   MV  G  P+  TYN        +  A  A+K++ +M + G+
Sbjct: 179 LKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGI 238

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +PN+  Y +L+       ++D   ++   +K  G  PD  +Y   + GLC+  +  EA 
Sbjct: 239 -MPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAF 297

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           Q  V + + G       +  L  GL Q+
Sbjct: 298 QRLVMLQDGGFALGLKGYSCLIDGLFQA 325



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 5/223 (2%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A + F  M      P    ++ +L     +    L+L   N M   G  P  ATY+ ++
Sbjct: 155 DAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLM 214

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G   DA ++  EM+  G+ P+ + Y             + A++L   MK+ G C
Sbjct: 215 DGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKG-C 273

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+  +YN  +     + R++   +    ++  G    L  Y+ LI GL + +++ E   
Sbjct: 274 LPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFG 333

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKKK 280
           Y+  M+E+ + P  V +  + RG  ++    D L     +KKK
Sbjct: 334 YYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKK 376



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 3/195 (1%)

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
           R+R       + S++L + S  H  +   D L   +  G+  + + ++++V    S GR 
Sbjct: 96  RLRSRPLHAHAVSLLLRLSS--HADEAMFDALADARAAGLPASSSAFAALVAAHSSAGRH 153

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
            DA +    M      P+A  YN   K          A+ LY +M   G C PN  +YN+
Sbjct: 154 ADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAG-CAPNRATYNV 212

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           L+             ++++++   G+ P++  YT+L+  LC   K  EA Q    M +KG
Sbjct: 213 LMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKG 272

Query: 251 LLPQKVTFETLYRGL 265
            LP +VT+     GL
Sbjct: 273 CLPDEVTYNAFLSGL 287



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 120/295 (40%), Gaps = 54/295 (18%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL------------ 50
           T +I G CK   +D A +   EM E G +P V+TYN L++G  R   L            
Sbjct: 421 TIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEM 480

Query: 51  --HPSERFEKTIRNAEKVFDEMRVR-------------------------GIEPDVTSFS 83
             +PS  F +    A +V D   +R                         G+ PDV +++
Sbjct: 481 GNNPS-LFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYN 539

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            +++   +A     ++     ++ KGI P   TY +++  L    R  DA  L   ++++
Sbjct: 540 TLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQS 599

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM-- 201
           G  PS   YN   +     K  + A+ L+         +P  +++ +   +    ++   
Sbjct: 600 GSSPSLSIYNSMMRSLCRMKKLSQAINLWLDY------LPKKYNFPVESEVLANAHKEIE 653

Query: 202 -----DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 251
                D VRE+    +  G     + YT+ + GLC+ ++  +A + F  + E G+
Sbjct: 654 DGSLDDGVRELIKIDQEYGYISS-NPYTIWLIGLCQVRRTDDALRIFHTLQEFGI 707


>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
          Length = 806

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 132/258 (51%), Gaps = 11/258 (4%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +LI+G C+   +  A + +  M+ +G+E + +TYN+++ G C+          +  +  A
Sbjct: 472 ALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCK----------DSKMEEA 521

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            K+  +M  RG +PD+ +F+ +LH Y    + + +   L+ MK +G+ P + +Y +++  
Sbjct: 522 IKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDG 581

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C    I  A+E L E++  G+ P+   YN     Y    D +GA+     MK +G+   
Sbjct: 582 HCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPT 641

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N+ +Y  L+        ++  + I++  + + +   +  YT++I G C+  K  EA  YF
Sbjct: 642 NV-TYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYF 700

Query: 244 VEMIEKGLLPQKVTFETL 261
            EM  +G+ P K+T+ TL
Sbjct: 701 EEMRSRGISPNKLTYTTL 718



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 135/333 (40%), Gaps = 56/333 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I   CK  ++D     L E+   G++P VVTYNVL++ +C+      S R E+  R
Sbjct: 224 YTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCK------SGRVEEAFR 277

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +   M   G+ P V +F I+++  +R  +       L  M++ G+ P    Y+ ++
Sbjct: 278 ----LKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELI 333

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G    A  L  EMV   + P+A TYN   K      +   A ++   M   G+ 
Sbjct: 334 GWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMT 393

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDV--------------------KGS------- 214
           V       ++  +     R++ V  I N++                    KG        
Sbjct: 394 VHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVG 453

Query: 215 --------GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
                   GLG +L +   LIHGLCE +  KEA +    M+ KG+    +T+  + RG  
Sbjct: 454 IWFKTLNKGLGVNLATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCC 513

Query: 267 QSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
           +   +           EE+I    +     FKP
Sbjct: 514 KDSKM-----------EEAIKLHGDMTRRGFKP 535



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 122/264 (46%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L++ +C + +++     L +M   G++P++V+Y  +++G C+           K IR
Sbjct: 540 FNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCK----------AKDIR 589

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A++   E+  RG++P+V  ++ ++  Y R      ++D +  MK  GI PT  TY S++
Sbjct: 590 KAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLM 649

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G +E+A+ +  +   N V      Y    + Y        A+  + +M+  G+ 
Sbjct: 650 YWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGIS 709

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +Y  L+  +      +   ++++++ GSG+ PD  +Y  LI    E     +   
Sbjct: 710 -PNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEVNSLDKDIG 768

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
           +  E+    L      +  L  G+
Sbjct: 769 HTAELSSGALTKDDRMYNILSNGI 792



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 130/291 (44%), Gaps = 29/291 (9%)

Query: 1   MYTSLIYGW-CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF--- 56
           +Y  LI GW C+      A R   EM+ + ++P  VTYN++   +C+   +  +ER    
Sbjct: 328 IYNELI-GWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILED 386

Query: 57  -----------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93
                                   + + +   + +EM  RG+ P+    +  +    +  
Sbjct: 387 MLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGG 446

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           + Q ++        KG+   +AT ++++  LC    +++A +++  M+  G+   + TYN
Sbjct: 447 KHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYN 506

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
              +          A+KL+  M   G   P++ ++N L+  +  L +M+    + + +K 
Sbjct: 507 IMIRGCCKDSKMEEAIKLHGDMTRRGF-KPDLFTFNTLLHAYCNLGKMEETFHLLDQMKT 565

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            GL PD+ SY  +I G C+ +  ++A +Y  E++++GL P    +  L  G
Sbjct: 566 EGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGG 616



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 116/265 (43%), Gaps = 19/265 (7%)

Query: 28  RGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMR-VRGIEPDVTSFSIVL 86
           RG  P++ T N  L  + R   L            A +VFDEMR  R +  +  S++ ++
Sbjct: 179 RGAPPSIKTCNAFLEALVRAGQLDA----------AREVFDEMRESRNVALNEYSYTAMI 228

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
               +A +     + L  +   G+ PTV TY+ ++  LC  GR+E+A  L G M + G+ 
Sbjct: 229 KALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMT 288

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           PS  T+         R +  G + +  Q  E     PN   YN LIG             
Sbjct: 289 PSVVTFGILINGL-ARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALR 347

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +++++    + P   +Y ++   LC++ + + A +   +M+  G+      F T+   L+
Sbjct: 348 LFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLL 407

Query: 267 QSDMLRTWRRLKK--KLDEESITFG 289
           Q    RT RRL+    +  E +T G
Sbjct: 408 Q----RT-RRLESVVSITNEMVTRG 427


>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
          Length = 794

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 159/335 (47%), Gaps = 48/335 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT L+   C   +ID A + LG M ++G  P+ VTYN  L+G+C+   ++  E F++ +
Sbjct: 244 IYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVN--EAFQRLV 301

Query: 61  RNAE--------------------KVFDE-------MRVRGIEPDVTSFSIVLHVYSRAH 93
              +                    + FDE       M  R I PDV  ++I++   + A 
Sbjct: 302 MLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAG 361

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           + + +L  L+ MK+KG  P    Y++V+K LC  G +E A  L  EM++N +   + T  
Sbjct: 362 RIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQT 421

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK- 212
                   R   + AM+++ +M E G C P + +YN LI  F    R++  R +++ ++ 
Sbjct: 422 IMICGLCKRGLVDEAMQIFDEMGEHG-CDPTVMTYNALIDGFYREGRLEEARMLFHKMEM 480

Query: 213 ------------GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
                       G+    D +S   L+H +C+  +  +A +    +I+ G++P  VT+ T
Sbjct: 481 GNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNT 540

Query: 261 LYRGLIQSDMLRTWRRLKKKL-----DEESITFGS 290
           L  GL ++  L    RL K+L       + IT+G+
Sbjct: 541 LINGLCKARNLDGAVRLFKELQLKGISPDEITYGT 575



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 135/317 (42%), Gaps = 46/317 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +++        I +A      M+  G  PN  TYNVL++G+C++             
Sbjct: 174 VYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQG----------MA 223

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A K+FDEM  RGI P+V  ++++L     A +   ++  L  MK+KG  P   TY++ 
Sbjct: 224 GDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAF 283

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF---------FKE------------- 158
           +  LC  GR+ +A + L  +   G     + Y+C          F E             
Sbjct: 284 LSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNI 343

Query: 159 ----------YRGRKDAN---GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
                      RG  +A     A+     MK+ G  VP+   YN ++ +      ++   
Sbjct: 344 SPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGF-VPDTFCYNTVLKVLCDHGDLERAH 402

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            + +++  + L  D  + T++I GLC++    EA Q F EM E G  P  +T+  L  G 
Sbjct: 403 TLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGF 462

Query: 266 IQSDMLRTWRRLKKKLD 282
            +   L   R L  K++
Sbjct: 463 YREGRLEEARMLFHKME 479



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 4/208 (1%)

Query: 64  EKVFDEM---RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           E +FD +   R  G+    ++F+ ++  +S A +   ++   + M E    PT   Y+++
Sbjct: 119 EAMFDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTI 178

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +K L   G I  A  L   MV  G  P+  TYN        +  A  A+K++ +M + G+
Sbjct: 179 LKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGI 238

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +PN+  Y +L+       ++D   ++   +K  G  PD  +Y   + GLC+  +  EA 
Sbjct: 239 -MPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAF 297

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           Q  V + + G       +  L  GL Q+
Sbjct: 298 QRLVMLQDGGFALGLKGYSCLIDGLFQA 325



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 3/195 (1%)

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
           R+R       + S++L + S  H  +   D L   +  G+  + + ++++V    S GR 
Sbjct: 96  RLRSRPLHAHAVSLLLRLSS--HADEAMFDALADARAAGLPASSSAFAALVAAHSSAGRH 153

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
            DA +    M      P+A  YN   K          A+ LY +M   G C PN  +YN+
Sbjct: 154 ADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAG-CAPNRATYNV 212

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           L+             ++++++   G+ P++  YT+L+  LC   K  EA Q    M +KG
Sbjct: 213 LMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKG 272

Query: 251 LLPQKVTFETLYRGL 265
            LP +VT+     GL
Sbjct: 273 CLPDEVTYNAFLSGL 287



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 5/223 (2%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A + F  M      P    ++ +L     +    L+L   N M   G  P  ATY+ ++
Sbjct: 155 DAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLM 214

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G   DA ++  EM+  G+ P+ + Y             + A++L   MK+ G C
Sbjct: 215 DGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKG-C 273

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+  +YN  +     + R++   +    ++  G    L  Y+ LI GL + +++ E   
Sbjct: 274 LPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFG 333

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKKK 280
           Y+  M+E+ + P  V +  + RG  ++    D L     +KKK
Sbjct: 334 YYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKK 376



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 118/294 (40%), Gaps = 52/294 (17%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH----------- 51
           T +I G CK   +D A +   EM E G +P V+TYN L++G  R   L            
Sbjct: 421 TIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEM 480

Query: 52  ------------------PSERFEKTIRN---------AEKVFDEMRVRGIEPDVTSFSI 84
                              SE   K + +         A K+   +   G+ PDV +++ 
Sbjct: 481 GNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNT 540

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           +++   +A     ++     ++ KGI P   TY +++  L    R  DA  L   ++++G
Sbjct: 541 LINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSG 600

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM--- 201
             PS   YN   +     K  + A+ L+         +P  +++ +   +    ++    
Sbjct: 601 SSPSLSIYNSMMRSLCRMKKLSQAINLWLDY------LPKKYNFPVESEVLANAHKEIED 654

Query: 202 ----DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 251
               D VRE+    +  G     + YT+ + GLC+ ++  +A + F  + E G+
Sbjct: 655 GSLDDGVRELIKIDQEYG-SISSNPYTIWLIGLCQVRRTDDALRIFHTLQEFGI 707


>gi|297834384|ref|XP_002885074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330914|gb|EFH61333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 517

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 129/255 (50%), Gaps = 16/255 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++ GWC +  +  A+R   ++I    +P+VV+Y  ++N + ++  L            A 
Sbjct: 247 ILNGWCVLGNVHEAKRIWKDIIASKCKPDVVSYGTMINALTKKGKLG----------KAM 296

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           +++  +   G  PDV   + V+       +   +L+    M EKG  P V TY+S++K L
Sbjct: 297 ELYRALWETGRNPDVKICNNVIDALCFKKRIPEALEVFKEMSEKGPSPNVVTYNSLLKHL 356

Query: 125 CSCGRIEDAEELLGEMV-RNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
           C   R E   EL+ EM  + G C P+  T+    K  +  KD +  ++   + K    C 
Sbjct: 357 CKIRRTEKVWELVEEMEHKGGSCSPNDVTFGYLLKYSQRSKDVDAVLERMAKNK----CE 412

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
                YN++  +++  +  + VREIW +++ SGLGPD  +YT+ IHGL  K K  EA  Y
Sbjct: 413 MTSDLYNLMFRLYVQWDNEEKVREIWGEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSY 472

Query: 243 FVEMIEKGLLPQKVT 257
           F EM+ KG++P+  T
Sbjct: 473 FQEMMSKGMVPEPRT 487



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 2/201 (0%)

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           +V DEM  R    D  ++ ++L+ Y+ AH+   ++      +E GI   +  +  ++  L
Sbjct: 158 QVVDEMSKRDGFVDEKTYEVLLNRYAAAHKVDEAVGVFERRREFGIEDDLVAFHGLLMWL 217

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C    +E AE L     R   C    T N     +    + + A ++++ +     C P+
Sbjct: 218 CRYKHVEFAETLFCSRRREFGC-DIRTMNIILNGWCVLGNVHEAKRIWKDIIASK-CKPD 275

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + SY  +I       ++    E++  +  +G  PD+     +I  LC K++  EA + F 
Sbjct: 276 VVSYGTMINALTKKGKLGKAMELYRALWETGRNPDVKICNNVIDALCFKKRIPEALEVFK 335

Query: 245 EMIEKGLLPQKVTFETLYRGL 265
           EM EKG  P  VT+ +L + L
Sbjct: 336 EMSEKGPSPNVVTYNSLLKHL 356



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 24/187 (12%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
            ++I   C   RI  A     EM E+G  PNVVTYN LL  +C+             IR 
Sbjct: 315 NNVIDALCFKKRIPEALEVFKEMSEKGPSPNVVTYNSLLKHLCK-------------IRR 361

Query: 63  AEKVF---DEMRVRG--IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP-TVAT 116
            EKV+   +EM  +G    P+  +F  +L    R+      L+++     K  C  T   
Sbjct: 362 TEKVWELVEEMEHKGGSCSPNDVTFGYLLKYSQRSKDVDAVLERM----AKNKCEMTSDL 417

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+ + +        E   E+ GEM R+G+ P   TY         +     A+  +++M 
Sbjct: 418 YNLMFRLYVQWDNEEKVREIWGEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMM 477

Query: 177 EDGLCVP 183
             G+ VP
Sbjct: 478 SKGM-VP 483


>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic [Vitis vinifera]
          Length = 869

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 128/260 (49%), Gaps = 10/260 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI  + +  +   +   L  M +  V P+++TYN ++N  C R  L   E       
Sbjct: 184 FTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINS-CARGGLDWEELL----- 237

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F +MR  GI+ D+ +++ +L   +R      +      M E GI P + TYS +V
Sbjct: 238 ---GLFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLV 294

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +      R+E   ELL EM   G  P   +YN   + +        AM ++RQM+  G C
Sbjct: 295 ETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAG-C 353

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN  +Y+IL+ ++    R D VR+++ ++K S   P+  +Y +LI+   E   +KE   
Sbjct: 354 VPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVT 413

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F +M+E+ + P   T+E L
Sbjct: 414 LFHDMVEENVEPNMETYEGL 433



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 16/234 (6%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           +PN   Y +++ GV  R  L         +   +++FDEM   G+ P V SF+ +++ Y 
Sbjct: 143 KPNEHIYTIMI-GVLGREGL---------LEKCQEIFDEMPSHGVAPSVFSFTALINAYG 192

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLG---EMVRNGVCP 147
           R  Q + SL+ L+ MK++ + P++ TY++V+   C+ G + D EELLG   +M   G+  
Sbjct: 193 RNGQYKSSLELLDRMKKERVSPSILTYNTVINS-CARGGL-DWEELLGLFAQMRHEGIQA 250

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
              TYN        R   + A  ++R M E G+ +P++ +Y+ L+  F  LNR++ V E+
Sbjct: 251 DIVTYNTLLSACARRGLGDEAEMVFRTMNEGGI-LPDITTYSYLVETFGKLNRLEKVSEL 309

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
             +++  G  PD+ SY +L+    +    KEA   F +M   G +P   T+  L
Sbjct: 310 LKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSIL 363



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 128/274 (46%), Gaps = 16/274 (5%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           +M+E  VEPN+ TY  L+   C +  LH          +A+K+   M  +G+ P   +++
Sbjct: 417 DMVEENVEPNMETYEGLIFA-CGKGGLH---------EDAKKILLHMNEKGVVPSSKAYT 466

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            V+  Y +A   + +L   N M E G  PTV TY+S+++     G  +++E +L +M ++
Sbjct: 467 GVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQS 526

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           GV  + +T+N   + +R       A+K Y +M E   C P+  +   ++ ++     ++ 
Sbjct: 527 GVARNRDTFNGVIEAFRQGGQFEEAIKAYVEM-EKARCDPDEQTLEAVLSVYCFAGLVEE 585

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             E + ++K  G+ P +  Y M++    +  +W +A Q   EM    +         + R
Sbjct: 586 SEEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQMIR 645

Query: 264 GLIQSDMLRTWRRLK---KKLDEESITFGSEFQN 294
           G    D    W+ ++   +KL  E  + G  F N
Sbjct: 646 GDYDDD--SNWQMVEYVFEKLKSEGCSLGVRFYN 677



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 129/296 (43%), Gaps = 31/296 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+  + K+NR++     L EM   G  P++ +YNVLL    +  S+  +    + ++
Sbjct: 290 YSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQ 349

Query: 62  NA-------------------------EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            A                           +F EM+V   EP+  +++I+++V+      +
Sbjct: 350 GAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFK 409

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
             +   + M E+ + P + TY  ++      G  EDA+++L  M   GV PS++ Y    
Sbjct: 410 EVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVI 469

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           + Y        A+  +  M E G   P + +YN LI MF           I   +  SG+
Sbjct: 470 EAYGQAALYEEALVAFNTMNEVG-SKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGV 528

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL-----YRGLIQ 267
             + D++  +I    +  +++EA + +VEM +    P + T E +     + GL++
Sbjct: 529 ARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVE 584



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 89/198 (44%), Gaps = 2/198 (1%)

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
           +P+   ++I++ V  R    +   +  + M   G+ P+V ++++++      G+ + + E
Sbjct: 143 KPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLE 202

Query: 136 LLGEMVRNGVCPSAETYNCFFKE-YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           LL  M +  V PS  TYN       RG  D    + L+ QM+ +G+   ++ +YN L+  
Sbjct: 203 LLDRMKKERVSPSILTYNTVINSCARGGLDWEELLGLFAQMRHEGIQA-DIVTYNTLLSA 261

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
                  D    ++  +   G+ PD+ +Y+ L+    +  + ++  +   EM   G  P 
Sbjct: 262 CARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPD 321

Query: 255 KVTFETLYRGLIQSDMLR 272
             ++  L     QS  ++
Sbjct: 322 ITSYNVLLEAHAQSGSIK 339



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 18/243 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI  + K      +E  L +M + GV  N  T+N ++       +     +FE+ I 
Sbjct: 500 YNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIE------AFRQGGQFEEAI- 552

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K + EM     +PD  +   VL VY  A   + S ++   +K  GI P+V  Y  ++
Sbjct: 553 ---KAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIKALGILPSVMCYCMML 609

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL----YRQMKE 177
                  R +DA +LL EM  N V   +  +    +  RG  D +   ++    + ++K 
Sbjct: 610 AVYAKADRWDDAHQLLDEMFTNRV---SNIHQVIGQMIRGDYDDDSNWQMVEYVFEKLKS 666

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
           +G C   +  YN L+     L + +    + N+    GL P+L     L+  +   + W+
Sbjct: 667 EG-CSLGVRFYNTLLEALWWLGQKERATRVLNEATKRGLFPELFRKNKLVWSVDVHRMWE 725

Query: 238 EAC 240
            A 
Sbjct: 726 GAA 728



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 60/114 (52%)

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
           S   +   FKE+  R D   +++L++ M+    C PN H Y I+IG+      ++  +EI
Sbjct: 109 SLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEI 168

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           ++++   G+ P + S+T LI+      ++K + +    M ++ + P  +T+ T+
Sbjct: 169 FDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTV 222


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 133/263 (50%), Gaps = 26/263 (9%)

Query: 6   IYG-----WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YG     W KI  +      +  M   GV P++ TYN L++  CRR SL+         
Sbjct: 264 VYGKMGMPWSKIAGL------VDSMKSSGVAPDLYTYNTLISS-CRRGSLY--------- 307

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A +VF+EM+  G  PD  +++ +L VY ++ +P+ +++ L  M+  G  P++ TY+S+
Sbjct: 308 EEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSL 367

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +      G +++A EL  +MV+ G+ P   TY      +      + AMK++ +M+  G 
Sbjct: 368 ISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAG- 426

Query: 181 CVPNMHSYNILIGMFMALNRMDMVR--EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           C PN+ ++N LI M    NR + V   +++ ++K     PD+ ++  L+    +     E
Sbjct: 427 CQPNICTFNALIKMHG--NRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSE 484

Query: 239 ACQYFVEMIEKGLLPQKVTFETL 261
               F EM   G +P++ TF TL
Sbjct: 485 VSGVFKEMKRAGFVPERDTFNTL 507



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 137/292 (46%), Gaps = 23/292 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI  + +   +D A     +M+++G++P+V TY  LL+G            FEKT +
Sbjct: 364 YNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSG------------FEKTGK 411

Query: 62  N--AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC---PTVAT 116
           +  A KVF+EMRV G +P++ +F+ ++ ++         ++ +   +E  IC   P + T
Sbjct: 412 DDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGN---FVEMMKVFEEIKICECVPDIVT 468

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           +++++      G   +   +  EM R G  P  +T+N     Y      + AM +YR+M 
Sbjct: 469 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRML 528

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           + G+  P++ +YN ++         +   ++  ++K     P+  +Y  L+H      K 
Sbjct: 529 DAGV-TPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYA-NGKE 586

Query: 237 KEACQYFVEMIEKGLL-PQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            E      E I  G++ PQ V  +TL     +SD+L    R   +L E+  +
Sbjct: 587 VERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFS 638



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 115/255 (45%), Gaps = 14/255 (5%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           K  R   A   L ++   GV  ++  Y  L+             R+    R A  VF ++
Sbjct: 197 KEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNG------RY----REAVMVFKKL 246

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKL-NFMKEKGICPTVATYSSVVKCLCSCGR 129
              G  P + +++++L+VY +   P   +  L + MK  G+ P + TY++++   C  G 
Sbjct: 247 EEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISS-CRRGS 305

Query: 130 I-EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           + E+A E+  EM   G  P   TYN     Y   +    AM++ ++M+  G   P++ +Y
Sbjct: 306 LYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFA-PSIVTY 364

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N LI  +     +D   E+ + +   G+ PD+ +YT L+ G  +  K   A + F EM  
Sbjct: 365 NSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRV 424

Query: 249 KGLLPQKVTFETLYR 263
            G  P   TF  L +
Sbjct: 425 AGCQPNICTFNALIK 439



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 104/209 (49%), Gaps = 11/209 (5%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +L+  + K + +   ER   E+ E+G  P++ T N +++   RR          + +   
Sbjct: 611 TLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRR----------RMVSKT 660

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            ++ + ++  G  P +T+++ ++++YSR    + S D L  +  KG+ P + ++++V+  
Sbjct: 661 NEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFA 720

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C  GR+++A  +  EM   G+ P   TYN F   Y        A+ + + M ++  C P
Sbjct: 721 YCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNE-CKP 779

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVK 212
           N ++YN LI  F  LNR D      ++++
Sbjct: 780 NQNTYNSLIDWFCKLNRRDEANSFISNLR 808



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 116/274 (42%), Gaps = 19/274 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI  + +    D A      M++ GV P++ TYN +L  + R      SE       
Sbjct: 504 FNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSE------- 556

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK---GIC-PTVATY 117
              KV  EM+    +P+  ++  +LH Y+   +    +++++ + E+   GI  P     
Sbjct: 557 ---KVLAEMKDGRCKPNELTYCSLLHAYANGKE----VERMSALAEEIYSGIIEPQAVLL 609

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
            ++V        + + E    E+   G  P   T N     Y  R+  +   ++   +K+
Sbjct: 610 KTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKD 669

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G   P++ +YN L+ M+      +   +I  ++   G+ PD+ S+  +I   C   + K
Sbjct: 670 SGF-TPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMK 728

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           EA + F EM + GL P  +T+ T         M 
Sbjct: 729 EASRIFAEMKDFGLAPDVITYNTFIASYASDSMF 762



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 127/275 (46%), Gaps = 36/275 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNG------VCRRASL----- 50
           Y +++    +    + +E+ L EM +   +PN +TY  LL+       V R ++L     
Sbjct: 539 YNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIY 598

Query: 51  ----HPSERFEKTI----------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                P     KT+             E+ F E+R +G  PD+T+ + ++ +Y R     
Sbjct: 599 SGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVS 658

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + + LNF+K+ G  P++ TY+S++         E +E++L E++  G+ P   ++N   
Sbjct: 659 KTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVI 718

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF----MALNRMDMVRE-IWNDV 211
             Y        A +++ +MK+ GL  P++ +YN  I  +    M +  +D+V+  I N+ 
Sbjct: 719 FAYCRNGRMKEASRIFAEMKDFGLA-PDVITYNTFIASYASDSMFIEAIDVVKYMIKNEC 777

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
           K     P+ ++Y  LI   C+  +  EA  +   +
Sbjct: 778 K-----PNQNTYNSLIDWFCKLNRRDEANSFISNL 807



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 94/206 (45%), Gaps = 4/206 (1%)

Query: 83  SIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR 142
           ++++ V  +  +   +   L+ ++  G+   +  Y+S++    S GR  +A  +  ++  
Sbjct: 189 AVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEE 248

Query: 143 NGVCPSAETYNCFFKEYRGRKDA--NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
            G  P+  TYN     Y G+     +    L   MK  G+  P++++YN LI      + 
Sbjct: 249 EGCRPTLITYNVILNVY-GKMGMPWSKIAGLVDSMKSSGVA-PDLYTYNTLISSCRRGSL 306

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
            +   E++ ++K +G  PD  +Y  L+    + ++ +EA +   EM   G  P  VT+ +
Sbjct: 307 YEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNS 366

Query: 261 LYRGLIQSDMLRTWRRLKKKLDEESI 286
           L     +  +L     LK ++ ++ I
Sbjct: 367 LISAYARDGLLDEAMELKSQMVKKGI 392


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 133/263 (50%), Gaps = 26/263 (9%)

Query: 6   IYG-----WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YG     W KI  +      +  M   GV P++ TYN L++  CRR SL+         
Sbjct: 264 VYGKMGMPWSKIAGL------VDSMKSSGVAPDLYTYNTLISS-CRRGSLY--------- 307

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A +VF+EM+  G  PD  +++ +L VY ++ +P+ +++ L  M+  G  P++ TY+S+
Sbjct: 308 EEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSL 367

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +      G +++A EL  +MV+ G+ P   TY      +      + AMK++ +M+  G 
Sbjct: 368 ISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAG- 426

Query: 181 CVPNMHSYNILIGMFMALNRMDMVR--EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           C PN+ ++N LI M    NR + V   +++ ++K     PD+ ++  L+    +     E
Sbjct: 427 CQPNICTFNALIKMHG--NRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSE 484

Query: 239 ACQYFVEMIEKGLLPQKVTFETL 261
               F EM   G +P++ TF TL
Sbjct: 485 VSGVFKEMKRAGFVPERDTFNTL 507



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 137/292 (46%), Gaps = 23/292 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI  + +   +D A     +M+++G++P+V TY  LL+G            FEKT +
Sbjct: 364 YNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSG------------FEKTGK 411

Query: 62  N--AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC---PTVAT 116
           +  A KVF+EMRV G +P++ +F+ ++ ++         ++ +   +E  IC   P + T
Sbjct: 412 DDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGN---FVEMMKVFEEIKICECVPDIVT 468

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           +++++      G   +   +  EM R G  P  +T+N     Y      + AM +YR+M 
Sbjct: 469 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRML 528

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           + G+  P++ +YN ++         +   ++  ++K     P+  +Y  L+H      K 
Sbjct: 529 DAGV-TPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYA-NGKE 586

Query: 237 KEACQYFVEMIEKGLL-PQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            E      E I  G++ PQ V  +TL     +SD+L    R   +L E+  +
Sbjct: 587 VERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFS 638



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 105/209 (50%), Gaps = 11/209 (5%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +L+  + K + +   ER   E+ E+G  P++ T N +++   RR          + +   
Sbjct: 611 TLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRR----------RMVSKT 660

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            ++ + ++  G  P +T+++ ++++YSR    + S D L  +  KG+ P + ++++V+  
Sbjct: 661 NEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFA 720

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C  GR+++A  +  EM   G+ P   TYN F   Y        A+ + + M ++G C P
Sbjct: 721 YCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNG-CKP 779

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVK 212
           N ++YN LI  F  LNR D      ++++
Sbjct: 780 NQNTYNSLIDWFCKLNRRDEASSFISNLR 808



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 115/255 (45%), Gaps = 14/255 (5%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           K  R   A   L ++   GV  ++  Y  L+             R+    R A  VF ++
Sbjct: 197 KEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNG------RY----REAVMVFKKL 246

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKL-NFMKEKGICPTVATYSSVVKCLCSCGR 129
              G  P + +++++L+VY +   P   +  L + MK  G+ P + TY++++   C  G 
Sbjct: 247 EEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISS-CRRGS 305

Query: 130 I-EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           + E+A E+  EM   G  P   TYN     Y   +    AM++ ++M+  G   P++ +Y
Sbjct: 306 LYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFA-PSIVTY 364

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N LI  +     +D   E+ + +   G+ PD+ +YT L+ G  +  K   A + F EM  
Sbjct: 365 NSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRV 424

Query: 249 KGLLPQKVTFETLYR 263
            G  P   TF  L +
Sbjct: 425 AGCQPNICTFNALIK 439



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 116/274 (42%), Gaps = 19/274 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI  + +    D A      M++ GV P++ TYN +L  + R      SE       
Sbjct: 504 FNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSE------- 556

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK---GIC-PTVATY 117
              KV  EM+    +P+  ++  +LH Y+   +    +++++ + E+   GI  P     
Sbjct: 557 ---KVLAEMKDGRCKPNELTYCSLLHAYANGKE----VERMSALAEEIYSGIIEPQAVLL 609

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
            ++V        + + E    E+   G  P   T N     Y  R+  +   ++   +K+
Sbjct: 610 KTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKD 669

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G   P++ +YN L+ M+      +   +I  ++   G+ PD+ S+  +I   C   + K
Sbjct: 670 SGF-TPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMK 728

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           EA + F EM + GL P  +T+ T         M 
Sbjct: 729 EASRIFAEMKDFGLAPDVITYNTFIASYASDSMF 762



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 126/274 (45%), Gaps = 34/274 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNG------VCRRASL----- 50
           Y +++    +    + +E+ L EM +   +PN +TY  LL+       V R ++L     
Sbjct: 539 YNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIY 598

Query: 51  ----HPSERFEKTI----------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                P     KT+             E+ F E+R +G  PD+T+ + ++ +Y R     
Sbjct: 599 SGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVS 658

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + + LNF+K+ G  P++ TY+S++         E +E++L E++  G+ P   ++N   
Sbjct: 659 KTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVI 718

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF----MALNRMDMVREIWNDVK 212
             Y        A +++ +MK+ GL  P++ +YN  I  +    M +  +D+V+ +  +  
Sbjct: 719 FAYCRNGRMKEASRIFAEMKDFGLA-PDVITYNTFIASYASDSMFIEAIDVVKYMIKN-- 775

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
             G  P+ ++Y  LI   C+  +  EA  +   +
Sbjct: 776 --GCKPNQNTYNSLIDWFCKLNRRDEASSFISNL 807



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 94/206 (45%), Gaps = 4/206 (1%)

Query: 83  SIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR 142
           ++++ V  +  +   +   L+ ++  G+   +  Y+S++    S GR  +A  +  ++  
Sbjct: 189 AVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEE 248

Query: 143 NGVCPSAETYNCFFKEYRGRKDA--NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
            G  P+  TYN     Y G+     +    L   MK  G+  P++++YN LI      + 
Sbjct: 249 EGCRPTLITYNVILNVY-GKMGMPWSKIAGLVDSMKSSGVA-PDLYTYNTLISSCRRGSL 306

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
            +   E++ ++K +G  PD  +Y  L+    + ++ +EA +   EM   G  P  VT+ +
Sbjct: 307 YEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNS 366

Query: 261 LYRGLIQSDMLRTWRRLKKKLDEESI 286
           L     +  +L     LK ++ ++ I
Sbjct: 367 LISAYARDGLLDEAMELKSQMVKKGI 392


>gi|413950073|gb|AFW82722.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 620

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 139/291 (47%), Gaps = 23/291 (7%)

Query: 7   YGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR----------ASLHPSERF 56
           +  C+ NR+  A + L EM  +G  P+ VTY  +++ +C+           A++ P    
Sbjct: 144 WALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAMPPVAAS 203

Query: 57  EKTIRNA-------EKVFD---EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMK 106
              I  A       ++VF    +M  RG++P+V +++ ++  + +A + +++   L  M 
Sbjct: 204 YNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMV 263

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
             G  P V T++++V+ L   GR+ DA ++   MV  G  PS  +YN   +      D  
Sbjct: 264 ITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLK 323

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
           GA  +   M++ G C PN+ +Y+ LI  F     +     IWND+  SG  P++  YT +
Sbjct: 324 GASSILNSMEQHG-CFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNM 382

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           +   C+K  + +A     +M+ +   P  VTF TL R L   D  R  R L
Sbjct: 383 VDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSL--CDCRRVGRAL 431



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 123/266 (46%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++   C+  R+      + +M+ RG++PNV+TY  +++  C+   L          R
Sbjct: 204 YNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGEL----------R 253

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M + G  P+V +F+ ++       +   +LD   +M  +G  P+  +Y+ ++
Sbjct: 254 MACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILI 313

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LCS G ++ A  +L  M ++G  P+  TY+     +    D  GA+ ++  M   G C
Sbjct: 314 RGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSG-C 372

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+  Y  ++ +F      +  + + + +      P+  ++  LI  LC+ ++   A  
Sbjct: 373 KPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALG 432

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
            F EM   G +P   T+  L  GL +
Sbjct: 433 VFHEMRRHGCVPNGRTYNELIHGLFR 458



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 129/286 (45%), Gaps = 28/286 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH---------- 51
           YT+++  +CK   + MA   L  M+  G  PNVVT+  L+ G+     +H          
Sbjct: 239 YTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMV 298

Query: 52  -----PSE-RFEKTIRN---------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                PS   +   IR          A  + + M   G  P+V ++S ++  +S+A    
Sbjct: 299 AEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLG 358

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++   N M   G  P V  Y+++V   C       A+ L+ +M+     P+  T+N   
Sbjct: 359 GAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLI 418

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSG 215
           +     +    A+ ++ +M+  G CVPN  +YN LI G+F   N  D +  +  +++  G
Sbjct: 419 RSLCDCRRVGRALGVFHEMRRHG-CVPNGRTYNELIHGLFREGNCGDALHMV-TEMQSHG 476

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   L +Y  ++ GLC+ +  +EA  +  +MI +G+ P   TF  +
Sbjct: 477 IELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAI 522



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 125/301 (41%), Gaps = 44/301 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G C +  +  A   L  M + G  PNV TY+ L++G  +   L           
Sbjct: 309 YNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLG---------- 358

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++++M   G +P+V  ++ ++ V+ +      +   ++ M  +   P   T+++++
Sbjct: 359 GAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLI 418

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
           + LC C R+  A  +  EM R+G  P+  TYN          +   A+ +  +M+     
Sbjct: 419 RSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIE 478

Query: 178 ----------DGLCV--------------------PNMHSYNILIGMFMALNRMDMVREI 207
                      GLC                     PN  +++ +I  +     + M   +
Sbjct: 479 LSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWM 538

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +       ++  YT+L+  LC + K  +A  Y ++M+ +G+ P  VT+  L RG+ +
Sbjct: 539 LGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVRGVFR 598

Query: 268 S 268
           +
Sbjct: 599 N 599



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 86/231 (37%), Gaps = 21/231 (9%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-------- 111
           +   +    EMR+RG+     +    +  ++RA  P  +L           C        
Sbjct: 71  VDGVQLALQEMRLRGVPCTEGALVAAVGAFARAGAPDRALKTFYRAVHDLGCARPHRAAA 130

Query: 112 ---PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGA 168
              P     +     LC   R+  A ++L EM R G  P   TY             + A
Sbjct: 131 LQPPHRRAAAGRTWALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEA 190

Query: 169 MKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228
            ++   M       P   SYN ++       RM  V  + +D+ G GL P++ +YT ++ 
Sbjct: 191 TEVLAAMP------PVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVD 244

Query: 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWR 275
             C+  + + AC     M+  G  P  VTF  L RGL       D L  WR
Sbjct: 245 AFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWR 295



 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR-ASLHPSERFEKT 59
           +YT L+   C  +++  A  +L +M+  G+ PN VT+NVL+ GV R    + PS+  +  
Sbjct: 553 VYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVRGVFRNLGCIEPSDFIQHI 612

Query: 60  IRN 62
             N
Sbjct: 613 TMN 615


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 141/283 (49%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +++  + K+N+ +       EM    ++  V T+N+++N +C+   L  ++ F  ++ 
Sbjct: 204 FNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSME 263

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N           G++P+V +++ V+H Y    + + +   L+ MK +G+ P   TY S++
Sbjct: 264 NL----------GVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLI 313

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G++E+A  +L +M   G+ P+A TYN     Y  + D   A     +M    + 
Sbjct: 314 SGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAI- 372

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P + +YN+LI       +MD    +  D+  SG+ PD  +Y +LI+G C     K+A  
Sbjct: 373 LPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFN 432

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
              EMI KG+ P  VT+ +L   L + + ++    L +K+  E
Sbjct: 433 LHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIRE 475



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 136/271 (50%), Gaps = 17/271 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI+      ++D A+  + +M + G+ P+ +TYN+L+NG CR               
Sbjct: 379 YNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCG------------- 425

Query: 62  NAEKVF---DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           NA+K F   DEM  +GI+P + +++ +++V S+ ++ + + D    +  +G  P +  ++
Sbjct: 426 NAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFN 485

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++   C+ G ++ A  LL EM +  + P   TYN   +          A +L ++MK  
Sbjct: 486 ALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRR 545

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P+  SYN LI  +     ++    I +++   G  P L +Y  LI GLC+ Q+   
Sbjct: 546 GI-RPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDL 604

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           A +   EM+ KG+ P   T+ +L  G+ + D
Sbjct: 605 AEELLKEMVSKGITPDDSTYFSLIEGIGKVD 635



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 146/311 (46%), Gaps = 26/311 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC---------------- 45
           Y SLI G CK  +++ A   L +M E G+ P  VTYN L++G C                
Sbjct: 309 YGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMV 368

Query: 46  RRASLHPSERF---------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           RRA L     +         E  +  A+ +  +M   GI PD  +++I+++ Y R    +
Sbjct: 369 RRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAK 428

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + +  + M  KGI PT+ TY+S++  L    R++ A++L  +++R G  P    +N   
Sbjct: 429 KAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALI 488

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +    + + A  L ++M +  + VP+  +YN L+       +++  RE+  ++K  G+
Sbjct: 489 DGHCANGNLDRAFALLKEMDKRNI-VPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGI 547

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD  SY  LI G  ++    +A     EM+  G  P  +T+  L +GL ++        
Sbjct: 548 RPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEE 607

Query: 277 LKKKLDEESIT 287
           L K++  + IT
Sbjct: 608 LLKEMVSKGIT 618



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 111/239 (46%), Gaps = 13/239 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKTI 60
           Y  LI G+C+      A     EMI +G++P +VTY  L+  + +R  +  ++  FEK I
Sbjct: 414 YNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKII 473

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R            G  PD+  F+ ++  +        +   L  M ++ I P   TY+++
Sbjct: 474 R-----------EGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTL 522

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C  G++E+A ELL EM R G+ P   +YN     Y  R D N A  +  +M   G 
Sbjct: 523 MQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGF 582

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
             P + +YN LI       + D+  E+  ++   G+ PD  +Y  LI G+ +     EA
Sbjct: 583 N-PTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEA 640



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 10/152 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+ +LI G C    +D A   L EM +R + P+ VTYN L+ G CR          E  +
Sbjct: 483 MFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCR----------EGKV 532

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++  EM+ RGI PD  S++ ++  YS+      +    + M   G  PT+ TY+++
Sbjct: 533 EEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNAL 592

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
           ++ LC   + + AEELL EMV  G+ P   TY
Sbjct: 593 IQGLCKNQQGDLAEELLKEMVSKGITPDDSTY 624



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 16  DMAERFLGEMIERG--VEPNVVTYNVLLNGVCRRASLHP-SERFEKTIRNAEKVFDEMRV 72
           D+A +F+  +  +G  ++   +   V+      +++LH   +  E  +   + VF E+ +
Sbjct: 97  DLALQFVTHIGFKGLDIKTKCLAVAVVSRSPSPKSTLHLLKQTIESRVAGVKDVFHELAI 156

Query: 73  RGIEPDVTSFSIVLHVYSRA----HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
                   S SIV  +  RA     +   + +  + MKEKG+ P + T+++++       
Sbjct: 157 TRDRLGTKS-SIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLN 215

Query: 129 RIEDAEELLGEMVRNGVCPSAETYN------CFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
           + E    L  EM R  +  +  T+N      C   + +  KD  G+M       E+    
Sbjct: 216 QTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSM-------ENLGVK 268

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN+ +YN +I  + +  R++  R + + +K  G+ PD  +Y  LI G+C+  K +EA   
Sbjct: 269 PNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGI 328

Query: 243 FVEMIEKGLLPQKVTFETLYRG 264
             +M E GLLP  VT+ TL  G
Sbjct: 329 LEKMKEIGLLPTAVTYNTLIDG 350



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 163 KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS 222
           K  + A + +  MKE G+ VP + ++N ++ +F+ LN+ + V  ++ ++    +   + +
Sbjct: 180 KRGDDAFECFDMMKEKGV-VPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYT 238

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL----- 277
           + ++I+ LC++ K K+A  +   M   G+ P  VT+ T+  G      +   R +     
Sbjct: 239 FNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMK 298

Query: 278 KKKLDEESITFGS 290
            + ++ +S T+GS
Sbjct: 299 NRGVEPDSYTYGS 311


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 140/290 (48%), Gaps = 15/290 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY +++ G CK      A   L  M +   +PN   Y+++++  C+   L          
Sbjct: 180 MYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLD--------- 230

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + +EM+ + I PD+ ++S ++    +  Q +        M    I P V T++SV
Sbjct: 231 -GATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSV 289

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G++EDAEE++  M+  GV P   TYN     Y  R   + A +++  M    +
Sbjct: 290 IDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSI 349

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+ SYNILI  +    ++D   ++  ++   GL P + +  +L+HGL E  + K A 
Sbjct: 350 -EPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQ 408

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDM----LRTWRRLKKKLDEESI 286
            +F EM+  G +P   T  TL  G  ++ +    +  + +L+++ ++ +I
Sbjct: 409 NFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNI 458



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 142/290 (48%), Gaps = 17/290 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + S+I G CK  +++ AE  +  MIE+GV+P+V+TYN++++G   R            + 
Sbjct: 286 FNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQ----------VD 335

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++FD M  + IEP++ S++I+++ Y+R  +   ++     + +KG+ P++ T + ++
Sbjct: 336 RAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLL 395

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM---KED 178
             L   GR + A+    EM+  G  P   T+      Y        AM  + ++   +ED
Sbjct: 396 HGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRRED 455

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
                N+  Y  +I       ++D     +  +   GL PD+ +YT +I G C++    E
Sbjct: 456 ----TNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDE 511

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
           A     +M + G L    T+  + RG ++S+ +   +   +++  +S +F
Sbjct: 512 AKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSF 561



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 124/287 (43%), Gaps = 17/287 (5%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           +D A     +M+     P+VV+++ LL     +A +H      K   +   +F E+    
Sbjct: 53  LDDAFSLFRQMVRTKPLPSVVSFSKLL-----KALVH-----MKHYSSVVSLFREIHKLR 102

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           I       SIV++     H+  L    L    +KGI      ++++++ L +  +++DA 
Sbjct: 103 IPVHEFILSIVVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAV 162

Query: 135 ELLGEMVRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
            L  ++VR  +C P+   Y         +     A  L R M E G   PN   Y+I+I 
Sbjct: 163 HLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLM-EQGSTKPNTCIYSIVID 221

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
            F     +D    + N++K   + PD+ +Y+ LI  LC+  +W+     F+EMI   + P
Sbjct: 222 AFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYP 281

Query: 254 QKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGSEFQNY 295
              TF ++  GL +   +          ++K +D + IT+      Y
Sbjct: 282 NVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGY 328



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 116/256 (45%), Gaps = 26/256 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNG------------VCRRAS 49
           Y  +I G+    ++D A      MI + +EPN+++YN+L+NG            VCR  S
Sbjct: 321 YNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREIS 380

Query: 50  ---LHPS---------ERFE-KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
              L PS           FE    ++A+  FDEM   G  PD+ +   +L  Y +    +
Sbjct: 381 QKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVE 440

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++   + ++ +     +  Y++V+  LC  G+++ A     ++   G+ P   TY    
Sbjct: 441 EAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMI 500

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y      + A  + R+M+++G C+ +  +YN+++  F+  N++  ++    ++ G   
Sbjct: 501 SGYCQEGLLDEAKDMLRKMEDNG-CLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSF 559

Query: 217 GPDLDSYTMLIHGLCE 232
             +  +  +L+  + E
Sbjct: 560 SFEAATVELLMDIIAE 575



 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT++I G CK  ++D A     ++   G+ P+V+TY  +++G C+          E  +
Sbjct: 460 IYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQ----------EGLL 509

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ 94
             A+ +  +M   G   D  ++++++  + R+++
Sbjct: 510 DEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNK 543


>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
 gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
          Length = 319

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 138/268 (51%), Gaps = 16/268 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+   CK  +I  A+  +  MIE+GVEPN VTY+ L+NG      L  +  FE    
Sbjct: 13  FNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGY-----LLQNRVFE---- 63

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KVF+ M  RG  PDV S++I+++   +A +   +    + M  +G+ P  ATY++++
Sbjct: 64  -ARKVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNTLL 122

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G  +   +L  +M   G  P   TY+ F      +   + A++L+R+M+ + L 
Sbjct: 123 G-----GFWKQKIQLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNNYL- 176

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YNILI       +++  RE++  +   GL PD+ S+T +I GLC +    EA +
Sbjct: 177 NPDLVIYNILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYK 236

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            F +M   G  P   ++  + RG +Q++
Sbjct: 237 AFRQMERDGCPPDCCSYNVIVRGFLQNN 264



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 135/254 (53%), Gaps = 20/254 (7%)

Query: 30  VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89
           + P+ VT+N+L++ +C++  +  ++   KT          M  +G+EP+  ++S +++ Y
Sbjct: 6   IMPDAVTFNILVDTLCKKGKISEAQGIVKT----------MIEKGVEPNTVTYSSLMNGY 55

Query: 90  SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
              ++   +    N M  +G  P V +Y+ ++   C   RI++A+++  EM   G+ P+ 
Sbjct: 56  LLQNRVFEARKVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNT 115

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
            TYN     +  +K     ++L++ M   G C P++ +Y+I +        +D   E++ 
Sbjct: 116 ATYNTLLGGFWKQK-----IQLFKDMHAQG-CSPDLVTYSIFLHGLSKQGYLDQALELFR 169

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           +++ + L PDL  Y +LI  +C+  K ++A + F+++  KGLLP   ++ ++  GL +  
Sbjct: 170 EMQNNYLNPDLVIYNILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCREG 229

Query: 270 ML----RTWRRLKK 279
           +L    + +R++++
Sbjct: 230 LLDEAYKAFRQMER 243



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 129/276 (46%), Gaps = 17/276 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SL+ G+   NR+  A +    MI RG  P+V++YN+L+NG C+           + I 
Sbjct: 48  YSSLMNGYLLQNRVFEARKVFNAMITRGCIPDVLSYNILINGCCK----------AQRID 97

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++FDEM  RG+ P+  +++ +L  + +  + QL  D    M  +G  P + TYS  +
Sbjct: 98  EAKQIFDEMSFRGLIPNTATYNTLLGGFWK-QKIQLFKD----MHAQGCSPDLVTYSIFL 152

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G ++ A EL  EM  N + P    YN              A +L+ ++   GL 
Sbjct: 153 HGLSKQGYLDQALELFREMQNNYLNPDLVIYNILIDAMCKSGKLEDARELFLKLHVKGL- 211

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ S+  +I        +D   + +  ++  G  PD  SY +++ G  +      A Q
Sbjct: 212 LPDVRSWTSIISGLCREGLLDEAYKAFRQMERDGCPPDCCSYNVIVRGFLQNNGASRAEQ 271

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F EM ++G     +T  TL   L+  D     +RL
Sbjct: 272 LFQEMFDRGFSADALT-RTLAADLLSKDDNLGLKRL 306



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 96/207 (46%), Gaps = 6/207 (2%)

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           I PD  +F+I++    +  +   +   +  M EKG+ P   TYSS++       R+ +A 
Sbjct: 6   IMPDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEAR 65

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           ++   M+  G  P   +YN         +  + A +++ +M   GL +PN  +YN L+G 
Sbjct: 66  KVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGL-IPNTATYNTLLGG 124

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
           F          +++ D+   G  PDL +Y++ +HGL ++    +A + F EM    L P 
Sbjct: 125 FWKQKI-----QLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNNYLNPD 179

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKKL 281
            V +  L   + +S  L   R L  KL
Sbjct: 180 LVIYNILIDAMCKSGKLEDARELFLKL 206



 Score = 40.8 bits (94), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 16/100 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI   CK  +++ A     ++  +G+ P+V ++  +++G+CR          E  +
Sbjct: 182 IYNILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCR----------EGLL 231

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVY------SRAHQ 94
             A K F +M   G  PD  S+++++  +      SRA Q
Sbjct: 232 DEAYKAFRQMERDGCPPDCCSYNVIVRGFLQNNGASRAEQ 271


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
          Length = 1080

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 131/261 (50%), Gaps = 11/261 (4%)

Query: 1    MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
            +Y SLI G    N ID+AE    EM E G  P+  TYN+LL+ + +      S R E+ +
Sbjct: 757  LYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGK------SMRIEEML 810

Query: 61   RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                KV +EM  +G E    +++ ++    ++ + + ++D    +  +G  PT  TY  +
Sbjct: 811  ----KVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPL 866

Query: 121  VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
            +  L   GRIEDAE L  EM+  G   +   YN     +R   +      L++ M + G+
Sbjct: 867  LDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGI 926

Query: 181  CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              P++ SY I+I       +++     +  +   GL PDL +Y +LI GL + ++ +EA 
Sbjct: 927  N-PDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAV 985

Query: 241  QYFVEMIEKGLLPQKVTFETL 261
              F EM +KG++P   T+ +L
Sbjct: 986  SLFNEMQKKGIVPNLYTYNSL 1006



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 144/307 (46%), Gaps = 30/307 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSE----RFE 57
           YT  I    +  R D A R L +M   G +P+V+T+ VL+  +C    +  ++    + +
Sbjct: 233 YTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMK 292

Query: 58  KTIRNAEKV---------------------FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           K+ +  ++V                     ++ M+  G   +V +++ V+    +  +  
Sbjct: 293 KSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVF 352

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+  + MK+KGI P   +Y+S++       R  DA EL   M  +G  P+  T+  F 
Sbjct: 353 EALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFI 412

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y    ++  A++ Y  MK  G+ VP++ + N ++       R+ M + +++++K  G+
Sbjct: 413 NYYGKSGESIKAIQRYELMKSKGI-VPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGV 471

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT----FETLYRGLIQSDMLR 272
            PD  +YTM+I    +  K+ EA + F +MIE   +P  +      +TLY+     +  R
Sbjct: 472 SPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWR 531

Query: 273 TWRRLKK 279
            + +LK+
Sbjct: 532 IFYQLKE 538



 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 104/232 (44%), Gaps = 17/232 (7%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y  L+ G  K  RI+ AE    EM+E G + N   YN+LLNG              +   
Sbjct: 863  YGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNG-------------HRIAG 909

Query: 62   NAEKV---FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            N EKV   F +M  +GI PD+ S++I++    +A Q    L     + E G+ P + TY+
Sbjct: 910  NTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYN 969

Query: 119  SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
             ++  L    R+E+A  L  EM + G+ P+  TYN           A  A K+Y ++   
Sbjct: 970  LLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTK 1029

Query: 179  GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
            G   PN+ +YN LI  +      D     +  +   G  P+  +Y  L + L
Sbjct: 1030 GW-KPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTYMQLPNQL 1080



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 123/284 (43%), Gaps = 52/284 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+Y   K      A      M+  GV P+V TY+VL+    +R             R
Sbjct: 163 YNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKR-------------R 209

Query: 62  NAEKVF---DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           + E V     EM   G++P+V S++I + V  +A +   +   L  M+ +G  P V T++
Sbjct: 210 DVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHT 269

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            +++ LC  GRI DA+++  +M ++   P   TY     ++    D+   M         
Sbjct: 270 VLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVM--------- 320

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
                                      EIWN +K  G   ++ +YT +I  LC+  +  E
Sbjct: 321 ---------------------------EIWNAMKADGYNDNVVAYTAVIDALCQVGRVFE 353

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           A + F EM +KG++P++ ++ +L  G +++D       L K +D
Sbjct: 354 ALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMD 397



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/293 (20%), Positives = 127/293 (43%), Gaps = 26/293 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI- 60
           YT++I   C++ R+  A     EM ++G+ P   +YN L++G  +      +    K + 
Sbjct: 338 YTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMD 397

Query: 61  -------------------RNAEKV-----FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                              ++ E +     ++ M+ +GI PDV + + VL   +++ +  
Sbjct: 398 IHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLG 457

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           ++    + +K  G+ P   TY+ ++KC     + ++A ++  +M+ N   P     N   
Sbjct: 458 MAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLI 517

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A +++ Q+KE  L  P   +YN L+       ++  V  +  ++  S  
Sbjct: 518 DTLYKAGRGDEAWRIFYQLKEMNL-EPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNY 576

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            P+L +Y  ++  LC+     +A      M  KG +P   ++ T+  GL++ +
Sbjct: 577 PPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEE 629



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 1/202 (0%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           + +  +VFD M+ + ++ +V +F+ +          + +   L  MKE GI     TY+ 
Sbjct: 106 VGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNG 165

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +V  L   G   +A E+   M+ +GV PS  TY+     +  R+D    + L R+M+  G
Sbjct: 166 LVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHG 225

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  PN++SY I I +     R D    I   ++  G  PD+ ++T+LI  LC+  +  +A
Sbjct: 226 V-KPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDA 284

Query: 240 CQYFVEMIEKGLLPQKVTFETL 261
              F +M +    P +VT+ TL
Sbjct: 285 KDVFWKMKKSDQKPDRVTYITL 306



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 123/279 (44%), Gaps = 47/279 (16%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR-- 61
           ++++G  K  R+ MA+R   E+   GV P+ +TY +++   C +AS     +F++ ++  
Sbjct: 445 AVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIK-CCSKAS-----KFDEAVKIF 498

Query: 62  -----------------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92
                                         A ++F +++   +EP   +++ +L    R 
Sbjct: 499 YDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGRE 558

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
            + +  +  L  M      P + TY++++ CLC  G + DA ++L  M   G  P   +Y
Sbjct: 559 GKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSY 618

Query: 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
           N         +  N A  ++ QMK+  + +P+   Y  L  +  +  ++ +++E  + +K
Sbjct: 619 NTVIYGLVKEERYNEAFSIFCQMKK--VLIPD---YATLCTILPSFVKIGLMKEALHIIK 673

Query: 213 GSGLGP----DLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
              L P    D  S   L+ G+ +K   +++ + F E+I
Sbjct: 674 DYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIE-FAEII 711


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 140/313 (44%), Gaps = 46/313 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+SLI  +C    I+       EM+ R V PNVVTY+ L+ G+ R              
Sbjct: 222 VYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRW---------- 271

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R A ++  +M  RG+ PDV +++++     +  +   ++  L+ M +KG  P   TY+ V
Sbjct: 272 REASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVV 331

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR------- 173
           V  LC   R++DA  ++  MV+ G  P A TYN   K   G    + AM L++       
Sbjct: 332 VNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKF 391

Query: 174 QMKED---------GLCVP--------------------NMHSYNILIGMFMALNRMDMV 204
            +K D         GLC                      N+ +YN LI  ++A  ++   
Sbjct: 392 HVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEA 451

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            ++W     SG  P+  +Y+++I+GLC+ Q    A   F +M + G+ P  + +  L   
Sbjct: 452 LKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTS 511

Query: 265 LIQSDMLRTWRRL 277
           L + D L   R L
Sbjct: 512 LCREDSLEQARSL 524



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 137/278 (49%), Gaps = 13/278 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L  G CK  R   A + L  M+++G EP  +TYNV++NG+C+          E  + 
Sbjct: 293 YTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCK----------EDRMD 342

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLD--KLNFMKEKGICPTVATYSS 119
           +A  V + M  +G +PD  +++ +L     A +   ++D  KL   ++  + P V T ++
Sbjct: 343 DAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNN 402

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +++ LC  GR+ DA  +   MV  G+  +  TYN   + Y   +    A+KL++   E G
Sbjct: 403 LIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESG 462

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              PN  +Y+++I     +  + + R ++  +K SG+ P +  Y  L+  LC +   ++A
Sbjct: 463 FS-PNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQA 521

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
              F EM         V+F  +  G +++  +++ + L
Sbjct: 522 RSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKEL 559



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 136/298 (45%), Gaps = 23/298 (7%)

Query: 5   LIYGWCKINRIDMAERFLGEMIER--GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           ++ G+C+  + D A     +M      V P+ VTYN L+NG C+           K +  
Sbjct: 118 VLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCK----------AKRLAE 167

Query: 63  AEKVFDEMRVRG-IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           A  +F+ M+  G   P++ ++S+++  Y ++ +    L  L  M+ +G+   V  YSS++
Sbjct: 168 ARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLI 227

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G IE   EL  EM+R  V P+  TY+C  +          A ++ + M   G+ 
Sbjct: 228 SAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGV- 286

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y +L        R     ++ + +   G  P   +Y ++++GLC++ +  +A  
Sbjct: 287 RPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFG 346

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
               M++KG  P  VT+ TL +GL  +  +     L K L  E          +H KP
Sbjct: 347 VVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSE---------KFHVKP 395



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 120/269 (44%), Gaps = 12/269 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTIR 61
           ++L   +   +    A   L  M +RG   NV   N++L G CR      +   F +  R
Sbjct: 81  SALTESFVNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKR 140

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSV 120
           N + V          PD  +++ +++ + +A +   +      MK+ G C P + TYS +
Sbjct: 141 NYDCVV---------PDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVL 191

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           + C C  G + +   LL EM R G+      Y+     + G  D     +L+ +M    +
Sbjct: 192 IDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKV 251

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+ +Y+ L+       R     E+  D+   G+ PD+ +YT+L  GLC+  +  +A 
Sbjct: 252 S-PNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAI 310

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           +    M++KG  P  +T+  +  GL + D
Sbjct: 311 KVLDLMVQKGEEPGTLTYNVVVNGLCKED 339



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 131/290 (45%), Gaps = 28/290 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHP--------- 52
           Y  ++ G CK +R+D A   +  M+++G +P+ VTYN LL G+C    +H          
Sbjct: 328 YNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLL 387

Query: 53  SERF------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ 94
           SE+F                  E  + +A ++   M   G++ ++ +++ ++  Y  A +
Sbjct: 388 SEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARK 447

Query: 95  PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
              +L    +  E G  P   TYS ++  LC    +  A  L  +M  +G+ P+   YN 
Sbjct: 448 LIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNA 507

Query: 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
                        A  L+++M+     V ++ S+NI+I   +    +   +E+ +++   
Sbjct: 508 LMTSLCREDSLEQARSLFQEMRNVNHNV-DVVSFNIIIDGTLKAGDVKSAKELLSEMFMM 566

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            L PD  ++++LI+   +     EA   + +M+  G +P  V F++L +G
Sbjct: 567 DLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKG 616



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 126/286 (44%), Gaps = 16/286 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVE--PNVVTYNVLLNGVCRRASLHPSERFEKT 59
           Y +L+ G+CK  R+  A R L E +++G +  PN+VTY+VL++  C+             
Sbjct: 152 YNTLVNGFCKAKRLAEA-RVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGE---------- 200

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +     + +EM   G++ DV  +S ++  +      +   +  + M  + + P V TYS 
Sbjct: 201 VGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSC 260

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +++ L   GR  +A E+L +M   GV P    Y            A  A+K+   M + G
Sbjct: 261 LMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKG 320

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              P   +YN+++      +RMD    +   +   G  PD  +Y  L+ GLC   K  EA
Sbjct: 321 E-EPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEA 379

Query: 240 CQYFVEMIEKG--LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
              +  ++ +   + P   T   L +GL +   +    R+   + E
Sbjct: 380 MDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVE 425



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 5/220 (2%)

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           V+ +M    + P  TS S +   +   H P  +   L+ M ++G    V   + V+K  C
Sbjct: 64  VYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFC 123

Query: 126 SCGRIEDAEELLGEMVRNGVC--PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
             G+ + A  L  +M RN  C  P   TYN     +   K    A  L+  MK+ G C P
Sbjct: 124 RSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRP 183

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N+ +Y++LI  +     +     +  +++  GL  D+  Y+ LI   C +   +   + F
Sbjct: 184 NLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELF 243

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            EM+ + + P  VT+  L +GL ++     WR   + L +
Sbjct: 244 DEMLRRKVSPNVVTYSCLMQGLGRTG---RWREASEMLKD 280



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 123/294 (41%), Gaps = 22/294 (7%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +LI G CK  R+  A R    M+E G++ N+VTYN L+ G              + +  A
Sbjct: 402 NLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLA----------ARKLIEA 451

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            K++      G  P+  ++S++++   +     ++      MK+ GI PTV  Y++++  
Sbjct: 452 LKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTS 511

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC    +E A  L  EM          ++N          D   A +L  +M    L VP
Sbjct: 512 LCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDL-VP 570

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           +  +++ILI  F  L  +D    ++  +   G  P +  +  L+ G   K + ++     
Sbjct: 571 DAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLL 630

Query: 244 VEMIEKG-LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYH 296
            +M +K  +L  K+T          S +L     + + LD E I      Q+ H
Sbjct: 631 HQMADKDVVLDSKLT----------STILACLCHMSRNLDVEKILPKFSQQSEH 674



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I G CK+  + +A     +M + G+ P V+ YN L+  +CR          E ++ 
Sbjct: 470 YSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCR----------EDSLE 519

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EMR      DV SF+I++    +A   + + + L+ M    + P   T+S ++
Sbjct: 520 QARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILI 579

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G +++A  L  +MV  G  P    ++   K Y  + +    + L  QM +  + 
Sbjct: 580 NRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQMADKDVV 639

Query: 182 VPNMHSYNIL 191
           + +  +  IL
Sbjct: 640 LDSKLTSTIL 649


>gi|357134597|ref|XP_003568903.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Brachypodium distachyon]
          Length = 537

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 132/256 (51%), Gaps = 14/256 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  ++ GWC    +  A+R   ++I   ++P++ TY   +N + +   L           
Sbjct: 255 WNIILNGWCVKGSLPDAKRIWNQIIASKLKPDLFTYGTFINSLTKAGKLS---------- 304

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F  M  +GI PDV   + ++       +   +LD    M ++G    VATY++++
Sbjct: 305 TAVKLFTSMWEKGINPDVAICNCIIDQLCFKKKIPEALDIFREMTDRGCQADVATYNTLI 364

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R E   ELL +M   G  P+  TY+   K     KD    + L ++M++ G C
Sbjct: 365 KYFCKIRRTEKVYELLDDMENKGCSPNNMTYSYILKTTEKPKDV---IHLLQRMEKSG-C 420

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  +YN+++ +++++   + V+++W++++ +G GPD  S+T+++HGL  + +  +A Q
Sbjct: 421 RLDSDTYNLILNLYVSMKYENGVQQVWDEMERNGSGPDQRSFTIMVHGLHSQGRLDQALQ 480

Query: 242 YFVEMIEKGLLPQKVT 257
           Y+  M  +G+ P+  T
Sbjct: 481 YYTTMKSRGMTPEPRT 496



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 97/208 (46%), Gaps = 4/208 (1%)

Query: 58  KTIRNAEKVFDEM--RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA 115
           K ++   ++FDE+    RG+     +F+++L+ Y+ AH+ Q +++     K+ G    + 
Sbjct: 160 KKVKLMTQLFDEIPEERRGLVVTNRTFAVLLNRYAGAHKVQEAIEMFYKRKDYGFEVDLV 219

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
            +  ++  LC    +E+AE L  +  ++   P  +++N     +  +     A +++ Q+
Sbjct: 220 GFQILLMSLCRYKHVEEAEALFLQK-KDEFPPVIKSWNIILNGWCVKGSLPDAKRIWNQI 278

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
               L  P++ +Y   I       ++    +++  +   G+ PD+     +I  LC K+K
Sbjct: 279 IASKL-KPDLFTYGTFINSLTKAGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKK 337

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYR 263
             EA   F EM ++G      T+ TL +
Sbjct: 338 IPEALDIFREMTDRGCQADVATYNTLIK 365


>gi|356536611|ref|XP_003536830.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 578

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 138/279 (49%), Gaps = 15/279 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+ G+C  N++  A +    M+ERG +P+ +TY +L++G C              + 
Sbjct: 286 YNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYC----------LIDKVD 335

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F  M  RG+ PDV S++I++  Y +  +   +++ L  M  K + P + TY+SVV
Sbjct: 336 EARNLFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVV 395

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVC---PSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
             LC  G I DA +L+ EM  +  C   P   TYN   +     +    A+  ++ +  +
Sbjct: 396 DGLCKSGGILDAWKLVDEM--HYCCQPPPDVTTYNILLESLCRIECVEKAIAFFKHLIFE 453

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
               PN+ SYNILI       R+D    ++N +    L PD+ +Y +L+  L   Q+  +
Sbjct: 454 RSFAPNVWSYNILISGCCKNRRLDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDK 513

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A    V+++++G+ P   T+  L  GL +    +T +++
Sbjct: 514 AIALLVQIVDQGISPNLRTYNILINGLHKGGRPKTAQKI 552



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 140/292 (47%), Gaps = 23/292 (7%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           TSL+ G+C  N++D A      MIERG + +++ YN+L+NG C              +  
Sbjct: 252 TSLLNGFCLNNKVDEARELFNVMIERGEQHDIINYNILMNGYC----------LNNKVGE 301

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A K+F  M  RG +PD  +++I++H Y    +   + +  + M E+G+ P V +Y+ ++K
Sbjct: 302 ARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIK 361

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C   R+ +A  LL +M    + P+  TYN       G   + G +  ++ + E   C 
Sbjct: 362 GYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVD---GLCKSGGILDAWKLVDEMHYCC 418

Query: 183 ---PNMHSYNILIGMFMALNRMDMVREIWNDVKG----SGLGPDLDSYTMLIHGLCEKQK 235
              P++ +YNIL+    +L R++ V +     K         P++ SY +LI G C+ ++
Sbjct: 419 QPPPDVTTYNILLE---SLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRR 475

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             EA   F  M  K L+P  VT+  L   L     L     L  ++ ++ I+
Sbjct: 476 LDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGIS 527



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 128/290 (44%), Gaps = 35/290 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI  +C + ++D A   +G++++ G  PNVVT+  L+ G C              + 
Sbjct: 92  FNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFC----------VNDKML 141

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLH--VYSRAHQPQLSLDKLNFMKEKGIC-PTVATYS 118
           +A  ++DEM  R I  D   +  +++    S+  +P+ ++  L  M+E+ +  P +  Y+
Sbjct: 142 DALYIYDEMVARRIRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYN 201

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +VV  LC  G I +A  L  +M+  G+ P   TY+                         
Sbjct: 202 TVVHGLCKDGNINEARVLCSKMIVQGIFPDIFTYSSLIY--------------------- 240

Query: 179 GLC-VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
           GLC          L+  F   N++D  RE++N +   G   D+ +Y +L++G C   K  
Sbjct: 241 GLCRAGQRKEVTSLLNGFCLNNKVDEARELFNVMIERGEQHDIINYNILMNGYCLNNKVG 300

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           EA + F  M+E+G  P  +T+  L  G    D +   R L   + E  + 
Sbjct: 301 EARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLV 350



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 134/334 (40%), Gaps = 80/334 (23%)

Query: 10  CKINRIDMAERFLGEMIE-----------------------------------RGVEPNV 34
           CK + ID A      M++                                   +GV P  
Sbjct: 30  CKFDSIDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFT 89

Query: 35  VTYNVLLNGVCRRASL---------------HPSERFEKTIR----------NAEKVFDE 69
           VT+N+L+N  C    +                P+     T+           +A  ++DE
Sbjct: 90  VTFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDE 149

Query: 70  MRVRGIEPDVTSFSIVLH--VYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSVVKCLCS 126
           M  R I  D   +  +++    S+  +P+ ++  L  M+E+ +  P +  Y++VV  LC 
Sbjct: 150 MVARRIRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCK 209

Query: 127 CGRIEDAEELLGEMVRNGVCPSAETYNCFF---------KEYRG-------RKDANGAMK 170
            G I +A  L  +M+  G+ P   TY+            KE              + A +
Sbjct: 210 DGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDEARE 269

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           L+  M E G    ++ +YNIL+  +   N++   R++++ +   G  PD  +YT+L+HG 
Sbjct: 270 LFNVMIERGE-QHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGY 328

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           C   K  EA   F  MIE+GL+P   ++  L +G
Sbjct: 329 CLIDKVDEARNLFHGMIERGLVPDVWSYNILIKG 362



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 105/249 (42%), Gaps = 32/249 (12%)

Query: 40  LLNGVCRRASLH----PSERFEK--TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93
           LL    RR  LH    PS+   K  +I +A  +F  M      P +  F+ +L   ++  
Sbjct: 9   LLMPYVRRIHLHSQPLPSQSTCKFDSIDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMR 68

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
               ++D    M+ KG+ P   T++ ++ C C  G+++ A  ++G++++ G  P+  T+ 
Sbjct: 69  YYATAIDLYTLMEYKGVVPFTVTFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFT 128

Query: 154 CFFKEYRGRKDANGAMKLYRQMKE--------------DGLCVPNMHSYNILIGMFMALN 199
              K +        A+ +Y +M                +GLC   +      + +   + 
Sbjct: 129 TLMKGFCVNDKMLDALYIYDEMVARRIRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKME 188

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
              +V+            P+L  Y  ++HGLC+     EA     +MI +G+ P   T+ 
Sbjct: 189 ERQLVK------------PNLIMYNTVVHGLCKDGNINEARVLCSKMIVQGIFPDIFTYS 236

Query: 260 TLYRGLIQS 268
           +L  GL ++
Sbjct: 237 SLIYGLCRA 245



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 11/152 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMI-ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y  L+   C+I  ++ A  F   +I ER   PNV +YN+L++G C+      + R ++ I
Sbjct: 427 YNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCK------NRRLDEAI 480

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                +F+ M  + + PD+ +++I+L       Q   ++  L  + ++GI P + TY+ +
Sbjct: 481 ----NLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGISPNLRTYNIL 536

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
           +  L   GR + A+++   +   G  P  +TY
Sbjct: 537 INGLHKGGRPKTAQKISLYLSIRGYHPDVKTY 568



 Score = 44.3 bits (103), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 10/71 (14%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           ++D A   L +++++G+ PN+ TYN+L+NG      LH   R     + A+K+   + +R
Sbjct: 510 QLDKAIALLVQIVDQGISPNLRTYNILING------LHKGGR----PKTAQKISLYLSIR 559

Query: 74  GIEPDVTSFSI 84
           G  PDV ++ I
Sbjct: 560 GYHPDVKTYII 570


>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
 gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
          Length = 1302

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 138/296 (46%), Gaps = 27/296 (9%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKTI 60
            +TSLI G CK   I  A   L EM+  G +PNV T+  L++G+C+R     + R F K +
Sbjct: 891  FTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLV 950

Query: 61   RN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
            R+                         AE +F  M+ +G+ P+V +++ +++ + +A   
Sbjct: 951  RSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSF 1010

Query: 96   QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
              + + +N M ++G  P + TY++ +  LC   R  +A ELL +    G+     TY   
Sbjct: 1011 GRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTIL 1070

Query: 156  FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
             +E   + D N A+  + +M + G    +M   NILI  F    +M     ++  V   G
Sbjct: 1071 IQEQCKQNDINQALAFFCRMNKTGF-EADMRLNNILIAAFCRQKKMKESERLFQLVVSLG 1129

Query: 216  LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
            L P  ++YT +I   C++     A +YF  M   G +P   T+ +L  GL +  M+
Sbjct: 1130 LIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMV 1185



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 118/251 (47%), Gaps = 10/251 (3%)

Query: 15   IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
            I+ AE    EM  RGV P+  +Y +++ G  R          +  I+ A++    M  RG
Sbjct: 799  IEYAENVFDEMSVRGVVPDSSSYKLMVIGCFR----------DGKIQEADRWLTGMIQRG 848

Query: 75   IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
              PD  + +++L           ++     M + G  P +  ++S++  LC  G I+ A 
Sbjct: 849  FIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAF 908

Query: 135  ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
            E+L EMVRNG  P+  T+         R     A +L+ ++       PN+H+Y  +IG 
Sbjct: 909  EMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGG 968

Query: 195  FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
            +   ++++    +++ +K  GL P++++YT LI+G C+   +  A +    M ++G +P 
Sbjct: 969  YCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPN 1028

Query: 255  KVTFETLYRGL 265
              T+      L
Sbjct: 1029 IYTYNAAIDSL 1039



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 115/261 (44%), Gaps = 12/261 (4%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y  ++ G  +  +I  A+R+L  MI+RG  P+  T  ++L  +C              + 
Sbjct: 821  YKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENG----------LVN 870

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             A   F +M   G +P++ +F+ ++    +    + + + L  M   G  P V T+++++
Sbjct: 871  RAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALI 930

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              LC  G  E A  L  ++VR+    P+  TY      Y      N A  L+ +MKE GL
Sbjct: 931  DGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGL 990

Query: 181  CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              PN+++Y  LI             E+ N +   G  P++ +Y   I  LC+K +  EA 
Sbjct: 991  -FPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAY 1049

Query: 241  QYFVEMIEKGLLPQKVTFETL 261
            +   +    GL    VT+  L
Sbjct: 1050 ELLNKAFSCGLEADGVTYTIL 1070



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 116/301 (38%), Gaps = 47/301 (15%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
            YT+LI G CK      A   +  M + G  PN+ TYN  ++ +C+++    +        
Sbjct: 997  YTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAF 1056

Query: 57   --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                +  I  A   F  M   G E D+   +I++  + R  + +
Sbjct: 1057 SCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMK 1116

Query: 97   LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
             S      +   G+ PT  TY+S++ C C  G I+ A +    M R+G  P + TY    
Sbjct: 1117 ESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLI 1176

Query: 157  KEYRGRKDANGAMKLYRQMKEDGLCVPNM------HSY---NILIGMFMALNRMDMVREI 207
                 +   + A KLY  M + GL  P +      + Y   N      + L  +D  +++
Sbjct: 1177 SGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLD--KKL 1234

Query: 208  WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            W           + +   L+  LC ++K   A  +F +++EK     +VT         +
Sbjct: 1235 W-----------IRTVRTLVRKLCSEKKVGVAALFFQKLLEKDSSADRVTLAAFTTACSE 1283

Query: 268  S 268
            S
Sbjct: 1284 S 1284



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 7/180 (3%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M+ +G+ P+  T + V++     G IE AE +  EM   GV P + +Y            
Sbjct: 774 MQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGK 833

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV-REIWNDVKGSGLG--PDLD 221
              A +    M + G  +P+  +  +++    AL    +V R IW   K   LG  P+L 
Sbjct: 834 IQEADRWLTGMIQRGF-IPDNATCTLIL---TALCENGLVNRAIWYFRKMIDLGFKPNLI 889

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           ++T LI GLC+K   K+A +   EM+  G  P   T   L  GL +        RL  KL
Sbjct: 890 NFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKL 949



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 90/209 (43%), Gaps = 22/209 (10%)

Query: 80  TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC--PTVATYSSVVKCLC----SCG----- 128
           TS+    HV S  H+  L  D  +   E+ I    ++A+ S  +  LC    + G     
Sbjct: 666 TSYLRQNHVVSSPHRVNLDFDANSLTHEQAITVVASLASESGSMVALCFFYWAVGFEKFR 725

Query: 129 -----RIEDAEELLGEMVRNGVCPSA-ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
                 +  A+ LL     NG    A E   C  + +      N A+ +   M+  GL  
Sbjct: 726 HFMRLYLVTADSLLA----NGNLQKAHEVMRCMLRNFSEIGRLNEAVGMVMDMQNQGL-T 780

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+  + N ++ + + L  ++    +++++   G+ PD  SY +++ G     K +EA ++
Sbjct: 781 PSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRW 840

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              MI++G +P   T   +   L ++ ++
Sbjct: 841 LTGMIQRGFIPDNATCTLILTALCENGLV 869


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 136/281 (48%), Gaps = 13/281 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G C   R    E  + EM+     PN+VT+N L+  +CR         FE+   
Sbjct: 219 YNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNG------LFERV-- 270

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +V  +M   G  PD+  ++ ++    +    +++ + LN M   G+ P V  Y++V+
Sbjct: 271 --HEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVL 328

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAE-TYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           K LCS  R ++AEELL EM +   CP  + T+N     +      +  ++L  QM   G 
Sbjct: 329 KGLCSAERWKEAEELLSEMFQKD-CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHG- 386

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C+P++ +Y  +I  F     +D    +   +   G  P+  SYT+++ GLC   +W +A 
Sbjct: 387 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAE 446

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +   +MI++G  P  VTF TL   L +  ++     L K++
Sbjct: 447 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM 487



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 152/341 (44%), Gaps = 61/341 (17%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC-----RRASLHPSER 55
           MY ++I G CK   +++A   L  M   G++PNVV YN +L G+C     + A    SE 
Sbjct: 288 MYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEM 347

Query: 56  FEKT--------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           F+K                     +    ++ ++M   G  PDV +++ V++ + +    
Sbjct: 348 FQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLI 407

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             ++  L  M   G  P   +Y+ V+K LCS GR  DAEEL+ +M++ G  P+  T+N  
Sbjct: 408 DEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTL 467

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY--------------------NILIGMF 195
                 +     A++L +QM  +G C P++ SY                    N+++   
Sbjct: 468 INFLCKKGLVEQAIELLKQMLVNG-CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKG 526

Query: 196 MALN---------------RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           ++ N               R++ V ++++++K + +  D   Y  +I  LC++ +   A 
Sbjct: 527 ISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAI 586

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            +F  M+  G +P + T+  L +GL    + +  + L  +L
Sbjct: 587 DFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 117/251 (46%), Gaps = 11/251 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+CK   ID A   L  M   G +PN V+Y ++L G+C                
Sbjct: 394 YTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRW----------V 443

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE++  +M  +G  P+  +F+ +++   +    + +++ L  M   G  P + +YS+V+
Sbjct: 444 DAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 503

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G+ E+A ELL  MV  G+ P+   Y+            N  ++++  +K+  + 
Sbjct: 504 DGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTI- 562

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +   YN +I         D   + +  +  +G  P+  +YTMLI GL  +   KEA +
Sbjct: 563 RSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQE 622

Query: 242 YFVEMIEKGLL 252
              E+  +G L
Sbjct: 623 LLSELCSRGAL 633



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 126/305 (41%), Gaps = 49/305 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G+C+  ++  A R    +    V PN  T+  ++ G+C R            I 
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAAAV---PVPPNAYTFFPVVRGLCTRGR----------IA 128

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA-------------HQPQLSLDK------L 102
           +A +V DEM  +G  P    + ++L    R+             H    +LD       L
Sbjct: 129 DALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVL 188

Query: 103 NFMKEKGIC----------------PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
           N + E+G                    + +Y++V+K LC   R  D EEL+ EMVR    
Sbjct: 189 NAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCA 248

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+  T+N                ++  QM E G C P++  Y  +I        +++  E
Sbjct: 249 PNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHG-CTPDIRMYATIIDGICKEGHLEVANE 307

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           I N +   GL P++  Y  ++ GLC  ++WKEA +   EM +K      VTF  L     
Sbjct: 308 ILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFC 367

Query: 267 QSDML 271
           Q+ ++
Sbjct: 368 QNGLV 372



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 87/209 (41%), Gaps = 4/209 (1%)

Query: 79  VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLG 138
           V +++ ++  Y RA Q   +      +    + P   T+  VV+ LC+ GRI DA E+L 
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 139 EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL 198
           EM   G  P    Y+   +          ++++   M   G C  +  + N+++      
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG-CTLDTGNCNLVLNAICEQ 194

Query: 199 NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
             +D    +   +   G   D+ SY  ++ GLC  ++W +  +   EM+     P  VTF
Sbjct: 195 GCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTF 254

Query: 259 ETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            TL   L ++ +      +  ++ E   T
Sbjct: 255 NTLIGYLCRNGLFERVHEVLAQMSEHGCT 283


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 136/281 (48%), Gaps = 13/281 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G C   R    E  + EM+     PN+VT+N L+  +CR         FE+   
Sbjct: 219 YNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNG------LFERV-- 270

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +V  +M   G  PD+  ++ ++    +    +++ + LN M   G+ P V  Y++V+
Sbjct: 271 --HEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVL 328

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAE-TYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           K LCS  R ++AEELL EM +   CP  + T+N     +      +  ++L  QM   G 
Sbjct: 329 KGLCSAERWKEAEELLSEMFQKD-CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHG- 386

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C+P++ +Y  +I  F     +D    +   +   G  P+  SYT+++ GLC   +W +A 
Sbjct: 387 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAE 446

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +   +MI++G  P  VTF TL   L +  ++     L K++
Sbjct: 447 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM 487



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 152/341 (44%), Gaps = 61/341 (17%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC-----RRASLHPSER 55
           MY ++I G CK   +++A   L  M   G++PNVV YN +L G+C     + A    SE 
Sbjct: 288 MYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEM 347

Query: 56  FEKT--------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           F+K                     +    ++ ++M   G  PDV +++ V++ + +    
Sbjct: 348 FQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLI 407

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             ++  L  M   G  P   +Y+ V+K LCS GR  DAEEL+ +M++ G  P+  T+N  
Sbjct: 408 DEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTL 467

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY--------------------NILIGMF 195
                 +     A++L +QM  +G C P++ SY                    N+++   
Sbjct: 468 INFLCKKGLVEQAIELLKQMLVNG-CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKG 526

Query: 196 MALN---------------RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           ++ N               R++ V ++++++K + +  D   Y  +I  LC++ +   A 
Sbjct: 527 ISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAI 586

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            +F  M+  G +P + T+  L +GL    + +  + L  +L
Sbjct: 587 DFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 117/251 (46%), Gaps = 11/251 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+CK   ID A   L  M   G +PN V+Y ++L G+C                
Sbjct: 394 YTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRW----------V 443

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE++  +M  +G  P+  +F+ +++   +    + +++ L  M   G  P + +YS+V+
Sbjct: 444 DAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 503

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G+ E+A ELL  MV  G+ P+   Y+            N  ++++  +K+  + 
Sbjct: 504 DGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTI- 562

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +   YN +I         D   + +  +  +G  P+  +YTMLI GL  +   KEA +
Sbjct: 563 RSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQE 622

Query: 242 YFVEMIEKGLL 252
              E+  +G L
Sbjct: 623 LLSELCSRGAL 633



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 126/305 (41%), Gaps = 49/305 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G+C+  ++  A R    +    V PN  T+  ++ G+C R            I 
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAAAV---PVPPNAYTFFPVVRGLCTRGR----------IA 128

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA-------------HQPQLSLDK------L 102
           +A +V DEM  +G  P    + ++L    R+             H    +LD       L
Sbjct: 129 DALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVL 188

Query: 103 NFMKEKGIC----------------PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
           N + E+G                    + +Y++V+K LC   R  D EEL+ EMVR    
Sbjct: 189 NAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCA 248

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+  T+N                ++  QM E G C P++  Y  +I        +++  E
Sbjct: 249 PNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHG-CTPDIRMYATIIDGICKEGHLEVANE 307

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           I N +   GL P++  Y  ++ GLC  ++WKEA +   EM +K      VTF  L     
Sbjct: 308 ILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFC 367

Query: 267 QSDML 271
           Q+ ++
Sbjct: 368 QNGLV 372



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 87/209 (41%), Gaps = 4/209 (1%)

Query: 79  VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLG 138
           V +++ ++  Y RA Q   +      +    + P   T+  VV+ LC+ GRI DA E+L 
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 139 EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL 198
           EM   G  P    Y+   +          ++++   M   G C  +  + N+++      
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG-CTLDTGNCNLVLNAICEQ 194

Query: 199 NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
             +D    +   +   G   D+ SY  ++ GLC  ++W +  +   EM+     P  VTF
Sbjct: 195 GCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTF 254

Query: 259 ETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            TL   L ++ +      +  ++ E   T
Sbjct: 255 NTLIGYLCRNGLFERVHEVLAQMSEHGCT 283


>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22670, mitochondrial; Flags: Precursor
 gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 562

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 131/271 (48%), Gaps = 12/271 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI+G+CK  + D A   +  M      P+VVTY   +   C+          E   R
Sbjct: 276 FNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCK----------EGDFR 325

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++ +EMR  G  P+V +++IV+H   ++ Q   +L     MKE G  P    YSS++
Sbjct: 326 RVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLI 385

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK-EDG- 179
             L   GR +DA E+  +M   GV      YN              A++L ++M+ E+G 
Sbjct: 386 HILSKTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGE 445

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C PN+ +Y  L+ M     +M ++  + + +  + +  D+ +Y +LI GLC   K +EA
Sbjct: 446 SCSPNVETYAPLLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEA 505

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           C +F E + KG++P+  T + L   L + +M
Sbjct: 506 CLFFEEAVRKGMVPRDSTCKMLVDELEKKNM 536



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 14/202 (6%)

Query: 29  GVEPNVVTYNVLLNGVCRRASL-HPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 87
           GV+ + +  N L++ + +  S+ H  E F K       +FD      I+PD  +F+I++H
Sbjct: 234 GVKTDTIAMNSLMDALVKENSIEHAHEVFLK-------LFD-----TIKPDARTFNILIH 281

Query: 88  VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147
            + +A +   +   ++ MK     P V TY+S V+  C  G      E+L EM  NG  P
Sbjct: 282 GFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNP 341

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
           +  TY          K    A+ +Y +MKEDG CVP+   Y+ LI +     R     EI
Sbjct: 342 NVVTYTIVMHSLGKSKQVAEALGVYEKMKEDG-CVPDAKFYSSLIHILSKTGRFKDAAEI 400

Query: 208 WNDVKGSGLGPDLDSYTMLIHG 229
           + D+   G+  D+  Y  +I  
Sbjct: 401 FEDMTNQGVRRDVLVYNTMISA 422



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 11/191 (5%)

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM-----VRNGVCPSAETYNCFFKEYRG 161
           E+    T+ T S V++ L   G+   A +   EM     V+          +   KE   
Sbjct: 196 EESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSI 255

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
                  +KL+  +K      P+  ++NILI  F    + D  R + + +K +   PD+ 
Sbjct: 256 EHAHEVFLKLFDTIK------PDARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPDVV 309

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +YT  +   C++  ++   +   EM E G  P  VT+  +   L +S  +     + +K+
Sbjct: 310 TYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKM 369

Query: 282 DEESITFGSEF 292
            E+     ++F
Sbjct: 370 KEDGCVPDAKF 380


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 125/263 (47%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + ++I G C+   +D AE     M E GV P+V TY  L+ G+CR             I 
Sbjct: 154 FNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGR----------IE 203

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  VF++M  RG++P+   F+I++  + +    +  L+    M+E+G+ P   TY+++V
Sbjct: 204 DARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIV 263

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    ++ A  ++ EM   G+ P   TY      Y   ++ + AM++ + M  +G+ 
Sbjct: 264 NGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVG 323

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +  + +Y  LI       R      +  ++  +GL PD  +YTM+I   C K   K   +
Sbjct: 324 LDEV-TYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLR 382

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
              EM  KG  P  VT+  +  G
Sbjct: 383 LLKEMQNKGRKPGVVTYNVIMNG 405



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 136/276 (49%), Gaps = 18/276 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++T LI   CK    +       EM ERGV P+ VTYN ++NG+CR           + +
Sbjct: 223 VFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCR----------ARDL 272

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           ++A  +  EMR  G+ PD  +++ ++  Y +  +  ++++    M  +G+     TY+++
Sbjct: 273 KSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTAL 332

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L   GR  DAE +LGEM+  G+ P   TY      +  + D    ++L ++M+  G 
Sbjct: 333 ISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGR 392

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P + +YN+++  F  L +M     + N +   G+ PD  +Y +L+ G C+  K  +  
Sbjct: 393 -KPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTD-- 449

Query: 241 QYFVEMIE--KGLLPQKVTFETLYRGLIQSDMLRTW 274
              +E ++  KG +P    + ++   +++    +T+
Sbjct: 450 ---IEELKSAKGTVPDLGVYTSIVGEIVKKKTTKTY 482



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 135/313 (43%), Gaps = 55/313 (17%)

Query: 21  FLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80
           F  ++++ G+ P    +NVL+  + R   L           +A+ VFDEM+ RG+   V 
Sbjct: 103 FYLQLLDAGLPPEAKLFNVLMRDLVRLGELA----------SAQNVFDEMQSRGVRRTVV 152

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           SF+ ++    RA     +      M E G+ P V TY ++++ LC  GRIEDA  +  +M
Sbjct: 153 SFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM 212

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE--------------DGLCV---- 182
              G+ P+A  +      +  + DA   ++L+R+M+E              +GLC     
Sbjct: 213 CGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDL 272

Query: 183 ----------------PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
                           P+  +Y  LI  +     +DM  EI  ++   G+G D  +YT L
Sbjct: 273 KSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTAL 332

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           I GL +  +  +A +   EM+E GL P   T+  +     +   ++T  RL K       
Sbjct: 333 ISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLK------- 385

Query: 287 TFGSEFQNYHFKP 299
               E QN   KP
Sbjct: 386 ----EMQNKGRKP 394



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 108/228 (47%), Gaps = 9/228 (3%)

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           RGI  + TS + ++  +  A  P+     L  + + G+ P    ++ +++ L   G +  
Sbjct: 78  RGIRLEPTSCTGLMSRFPTA--PEACAFYLQLL-DAGLPPEAKLFNVLMRDLVRLGELAS 134

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A+ +  EM   GV  +  ++N          D +GA  L+R+M E G+  P++++Y  LI
Sbjct: 135 AQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGV-TPDVYTYGALI 193

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                + R++  R ++  + G G+ P+   +T+LI   C+K   +   +   EM E+G+ 
Sbjct: 194 QGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVR 253

Query: 253 PQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           P  VT+  +  GL ++  L++   +        L  +++T+ +    Y
Sbjct: 254 PDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGY 301


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 143/302 (47%), Gaps = 26/302 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA---------SLH 51
           ++  L++G+CKI  +  A     E+  RG+ P+VV++N L++G CR           S+ 
Sbjct: 228 LFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVM 287

Query: 52  PSERF----------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
            SER                 E  +  A  +FDEM   G+ P+  +F+ ++    +  + 
Sbjct: 288 ESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKI 347

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
            L+L     MK++GI P + TY++++  LC  G +++A +LL EM+ NG  P   T+   
Sbjct: 348 DLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTL 407

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                   D + A+++  +M E+G+ + ++ ++  LI       R+     +  D+  +G
Sbjct: 408 MDGCCKDGDMDSALEIKDRMVEEGIELDDV-AFTALISGLCRDGRVRDAERMLKDMLSAG 466

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
             PD  +YTM+I   C+K   K   +   EM   G +P  VT+  L  G  +   ++  +
Sbjct: 467 HKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAK 526

Query: 276 RL 277
            L
Sbjct: 527 ML 528



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 127/261 (48%), Gaps = 11/261 (4%)

Query: 21  FLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80
           F  E+++ G  PNV  +N+L++G C+             + NA  VFDE+  RG+ P V 
Sbjct: 213 FYLEVLDYGYPPNVYLFNILMHGFCKIGD----------VMNARMVFDEISRRGLRPSVV 262

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           SF+ ++  Y R+   +      + M+ + I P V TYS+++  LC   R+E+A  L  EM
Sbjct: 263 SFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEM 322

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
              G+ P+  T+             + A++ +  MK+ G+  P++ +YN LI        
Sbjct: 323 CEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGI-RPDLITYNALINGLCRDGD 381

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
           +   R++ N++ G+G  PD  ++T L+ G C+      A +    M+E+G+    V F  
Sbjct: 382 LKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTA 441

Query: 261 LYRGLIQSDMLRTWRRLKKKL 281
           L  GL +   +R   R+ K +
Sbjct: 442 LISGLCRDGRVRDAERMLKDM 462



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 130/260 (50%), Gaps = 14/260 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G CK  +ID+A R    M +RG+ P+++TYN L+NG+CR   L          +
Sbjct: 334 FTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDL----------K 383

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ +EM   G +PD  +F+ ++    +      +L+  + M E+GI      +++++
Sbjct: 384 EARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALI 443

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+ DAE +L +M+  G  P   TY      +  + D     KL ++M+ DG  
Sbjct: 444 SGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGR- 502

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP + +YN L+  F    +M   + + + +    + P+  ++ +L+ G C   K   +  
Sbjct: 503 VPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHC---KHGSSVD 559

Query: 242 YFVEMIEKGLLPQKVTFETL 261
           + +   EKGL+    ++  L
Sbjct: 560 FKIFNGEKGLVSDYASYTAL 579



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD-MVRE 206
           S   ++     Y   +    A++  R +K++   +P +   + L+   M LN+      E
Sbjct: 154 SVLVFDALIIAYTDSEFIEDAIQCLRLVKKNNFSIP-VCGCDYLLRRVMKLNQQPGHCWE 212

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
            + +V   G  P++  + +L+HG C+      A   F E+  +GL P  V+F TL  G  
Sbjct: 213 FYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYC 272

Query: 267 QSDMLRTWRRLKKKLDEESIT 287
           +S  +     LK  ++ E I+
Sbjct: 273 RSKNVEEGFVLKSVMESERIS 293


>gi|449458793|ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g19280-like [Cucumis sativus]
 gi|449503522|ref|XP_004162044.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g19280-like [Cucumis sativus]
          Length = 532

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 141/306 (46%), Gaps = 22/306 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIER-----------------GVEPNVVTYNVLLNG 43
           +Y S+I    + N+  MA   L EM  +                 G +P+VV Y  ++N 
Sbjct: 221 VYKSVIKALLQTNQSGMAWDLLEEMHRQEGNLGKGWKVLLELRNFGSKPDVVDYTTVINS 280

Query: 44  VCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN 103
           +C+ + L  +   +  +  AE +F++M V G++PDV  ++I++  Y +      +   L+
Sbjct: 281 LCKVSLLKEATALD--VEMAEVMFEKMIVEGLKPDVVVYNILMDAYGKKGYMHKAFKLLD 338

Query: 104 FMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163
            M+   + P V TY++++  L   G +++A+++L E++R G      TY      Y  R 
Sbjct: 339 MMRSTNVTPDVVTYNTLINGLVMRGFLQEAKDILDELIRRGFSVDVVTYTNIIHGYSTRG 398

Query: 164 DANGAMKLYRQMKEDGLCV-PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS 222
           +   A  L+  M E+  CV P++ + + L+  +    RMD    ++  +   GL PDL  
Sbjct: 399 NFEEAFLLWYHMAEN--CVTPDVVTCSALLSGYCREKRMDEANALFCKMLDIGLKPDLIL 456

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           Y  LIHG C      E C    +MIE  ++P  VT   L  G  +  +    +    KL 
Sbjct: 457 YNTLIHGFCSVGNVDEGCNLVKKMIESSIIPNNVTHRALVLGFQKKRVTDPIQSATSKLQ 516

Query: 283 EESITF 288
           E  I +
Sbjct: 517 EILIAY 522



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 28/211 (13%)

Query: 80  TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
           T+ S++++ Y +      +L  ++ MK   I P++  Y SV+K L    +   A +LL E
Sbjct: 185 TTCSMMVNCYIKERMVTSALILIDQMKHLNIFPSIWVYKSVIKALLQTNQSGMAWDLLEE 244

Query: 140 MVRN-----------------GVCPSAETYNC---------FFKEYRGRKDANGAMKLYR 173
           M R                  G  P    Y             KE     D   A  ++ 
Sbjct: 245 MHRQEGNLGKGWKVLLELRNFGSKPDVVDYTTVINSLCKVSLLKEATAL-DVEMAEVMFE 303

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           +M  +GL  P++  YNIL+  +     M    ++ + ++ + + PD+ +Y  LI+GL  +
Sbjct: 304 KMIVEGL-KPDVVVYNILMDAYGKKGYMHKAFKLLDMMRSTNVTPDVVTYNTLINGLVMR 362

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
              +EA     E+I +G     VT+  +  G
Sbjct: 363 GFLQEAKDILDELIRRGFSVDVVTYTNIIHG 393


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 131/261 (50%), Gaps = 11/261 (4%)

Query: 1    MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
            +Y SLI G    N ID+AE    EM E G  P+  TYN+LL+ + +      S R E+ +
Sbjct: 882  LYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGK------SMRIEEML 935

Query: 61   RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                KV +EM  +G E    +++ ++    ++ + + ++D    +  +G  PT  TY  +
Sbjct: 936  ----KVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPL 991

Query: 121  VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
            +  L   GRIEDAE L  EM+  G   +   YN     +R   +      L++ M + G+
Sbjct: 992  LDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGI 1051

Query: 181  CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              P++ SY I+I       +++     +  +   GL PDL +Y +LI GL + ++ +EA 
Sbjct: 1052 N-PDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAV 1110

Query: 241  QYFVEMIEKGLLPQKVTFETL 261
              F EM +KG++P   T+ +L
Sbjct: 1111 SLFNEMQKKGIVPNLYTYNSL 1131



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 144/307 (46%), Gaps = 30/307 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSE----RFE 57
           YT  I    +  R D A R L +M   G +P+V+T+ VL+  +C    +  ++    + +
Sbjct: 358 YTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMK 417

Query: 58  KTIRNAEKV---------------------FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           K+ +  ++V                     ++ M+  G   +V +++ V+    +  +  
Sbjct: 418 KSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVF 477

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+  + MK+KGI P   +Y+S++       R  DA EL   M  +G  P+  T+  F 
Sbjct: 478 EALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFI 537

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y    ++  A++ Y  MK  G+ VP++ + N ++       R+ M + +++++K  G+
Sbjct: 538 NYYGKSGESIKAIQRYELMKSKGI-VPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGV 596

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT----FETLYRGLIQSDMLR 272
            PD  +YTM+I    +  K+ EA + F +MIE   +P  +      +TLY+     +  R
Sbjct: 597 SPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWR 656

Query: 273 TWRRLKK 279
            + +LK+
Sbjct: 657 IFYQLKE 663



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 121/259 (46%), Gaps = 17/259 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+Y   K      A      M+  GV P+V TY+VL+    +R             R
Sbjct: 288 YNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKR-------------R 334

Query: 62  NAEKVF---DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           + E V     EM   G++P+V S++I + V  +A +   +   L  M+ +G  P V T++
Sbjct: 335 DVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHT 394

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            +++ LC  GRI DA+++  +M ++   P   TY     ++    D+   M+++  MK D
Sbjct: 395 VLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKAD 454

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G    N+ +Y  +I     + R+    E+++++K  G+ P+  SY  LI G  +  ++ +
Sbjct: 455 GYN-DNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGD 513

Query: 239 ACQYFVEMIEKGLLPQKVT 257
           A + F  M   G  P   T
Sbjct: 514 ALELFKHMDIHGPKPNGYT 532



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 92/194 (47%), Gaps = 17/194 (8%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y  L+ G  K  RI+ AE    EM+E G + N   YN+LLNG              +   
Sbjct: 988  YGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNG-------------HRIAG 1034

Query: 62   NAEKV---FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            N EKV   F +M  +GI PD+ S++I++    +A Q    L     + E G+ P + TY+
Sbjct: 1035 NTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYN 1094

Query: 119  SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
             ++  L    R+E+A  L  EM + G+ P+  TYN           A  A K+Y ++   
Sbjct: 1095 LLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTK 1154

Query: 179  GLCVPNMHSYNILI 192
            G   PN+ +YN LI
Sbjct: 1155 GW-KPNVFTYNALI 1167



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/293 (20%), Positives = 127/293 (43%), Gaps = 26/293 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI- 60
           YT++I   C++ R+  A     EM ++G+ P   +YN L++G  +      +    K + 
Sbjct: 463 YTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMD 522

Query: 61  -------------------RNAEKV-----FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                              ++ E +     ++ M+ +GI PDV + + VL   +++ +  
Sbjct: 523 IHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLG 582

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           ++    + +K  G+ P   TY+ ++KC     + ++A ++  +M+ N   P     N   
Sbjct: 583 MAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLI 642

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A +++ Q+KE  L  P   +YN L+       ++  V  +  ++  S  
Sbjct: 643 DTLYKAGRGDEAWRIFYQLKEMNL-EPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNY 701

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            P+L +Y  ++  LC+     +A      M  KG +P   ++ T+  GL++ +
Sbjct: 702 PPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEE 754



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 1/207 (0%)

Query: 55  RFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV 114
           R    + +  +VFD M+ + ++ +V +F+ +          + +   L  MKE GI    
Sbjct: 226 RGHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNA 285

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            TY+ +V  L   G   +A E+   M+ +GV PS  TY+     +  R+D    + L R+
Sbjct: 286 YTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLRE 345

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           M+  G+  PN++SY I I +     R D    I   ++  G  PD+ ++T+LI  LC+  
Sbjct: 346 MEAHGV-KPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAG 404

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETL 261
           +  +A   F +M +    P +VT+ TL
Sbjct: 405 RISDAKDVFWKMKKSDQKPDRVTYITL 431



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 136/303 (44%), Gaps = 49/303 (16%)

Query: 16  DMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           DMAE F  ++++R  V+ NV T+  +  G+            E  +R+A      M+  G
Sbjct: 233 DMAEVF--DVMQRQIVKANVGTFAAIFGGLG----------VEGGLRSAPVALPVMKEAG 280

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           I  +  +++ +++   ++   + +L+    M   G+ P+V TYS ++        +E   
Sbjct: 281 IVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVL 340

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-- 192
            LL EM  +GV P+  +Y    +     K  + A ++  +M+ +G C P++ ++ +LI  
Sbjct: 341 WLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEG-CKPDVITHTVLIQV 399

Query: 193 -----------GMFMALNRMDM----------------------VREIWNDVKGSGLGPD 219
                       +F  + + D                       V EIWN +K  G   +
Sbjct: 400 LCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDN 459

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
           + +YT +I  LC+  +  EA + F EM +KG++P++ ++ +L  G +++D       L K
Sbjct: 460 VVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFK 519

Query: 280 KLD 282
            +D
Sbjct: 520 HMD 522



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 123/279 (44%), Gaps = 47/279 (16%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR-- 61
           ++++G  K  R+ MA+R   E+   GV P+ +TY +++   C +AS     +F++ ++  
Sbjct: 570 AVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIK-CCSKAS-----KFDEAVKIF 623

Query: 62  -----------------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92
                                         A ++F +++   +EP   +++ +L    R 
Sbjct: 624 YDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGRE 683

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
            + +  +  L  M      P + TY++++ CLC  G + DA ++L  M   G  P   +Y
Sbjct: 684 GKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSY 743

Query: 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
           N         +  N A  ++ QMK+  + +P+   Y  L  +  +  ++ +++E  + +K
Sbjct: 744 NTVIYGLVKEERYNEAFSIFCQMKK--VLIPD---YATLCTILPSFVKIGLMKEALHIIK 798

Query: 213 GSGLGP----DLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
              L P    D  S   L+ G+ +K   +++ + F E+I
Sbjct: 799 DYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIE-FAEII 836



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 81/148 (54%), Gaps = 12/148 (8%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            YT +I   CK  +++    +  +++E G+EP+++TYN+L++G      L  S+R E+ + 
Sbjct: 1058 YTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDG------LGKSKRLEEAV- 1110

Query: 62   NAEKVFDEMRVRGIEPDVTSF-SIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                +F+EM+ +GI P++ ++ S++LH+  +A +   +      +  KG  P V TY+++
Sbjct: 1111 ---SLFNEMQKKGIVPNLYTYNSLILHL-GKAGKAAEAGKMYEELLTKGWKPNVFTYNAL 1166

Query: 121  VKCLCSCGRIEDAEELLGEMVRNGVCPS 148
            ++     G  + A    G M+  G  P+
Sbjct: 1167 IRGYSVSGSTDSAYAAYGRMIVGGCLPN 1194


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 143/285 (50%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G CK+     A   L  +  + V+ N V YN ++ G+C+          +K + 
Sbjct: 45  YGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCK----------DKHVN 94

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  ++ EM  +GI P+V ++S ++  +    + + ++D  N +  + I P   T++ +V
Sbjct: 95  DAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILV 154

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   ++++ + +   M++ G+ P   TYN     YR  K+ N A  ++  M + G+ 
Sbjct: 155 DGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVN 214

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SYNILI  F  + ++D    ++N++    + P++ +Y  LI GL +  +   A Q
Sbjct: 215 -PDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQ 273

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              +M ++G+ P  +T+ ++   L ++  +     L  K  ++ I
Sbjct: 274 LVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGI 318



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 135/281 (48%), Gaps = 11/281 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++IYG CK   ++ A     EM+ +G+ PNVVTY+ L++G      L          
Sbjct: 79  MYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKL---------- 128

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           ++A  +F+++ +  I+PD  +F+I++  + +  + +        M ++GI P V TY+S+
Sbjct: 129 KDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSL 188

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V        +  A+ +   M + GV P   +YN     +   K  + AM L+ +M    +
Sbjct: 189 VDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNI 248

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +PN+ +YN LI       R+    ++ + +   G+ P++ +Y  +I  L +  +  +A 
Sbjct: 249 -IPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAI 307

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
               +  ++G+ P   T+  L  GL +   L+  R + + L
Sbjct: 308 ALITKFKDQGIQPSMYTYTILIDGLCKGGRLKDARNIFEDL 348



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 139/288 (48%), Gaps = 21/288 (7%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR----RASLHPSERFEKT 59
           +LI G C   +I  A  F  +++  G   + V+Y  L++G+C+    RA+L   +R +  
Sbjct: 12  TLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGK 71

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +              ++ +   ++ V++   +      + D  + M  KGI P V TYS+
Sbjct: 72  L--------------VQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSA 117

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMKED 178
           ++      G+++DA +L  +++   + P   T+N     + + RK   G       MK+ 
Sbjct: 118 LISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQG 177

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
              +P++ +YN L+  +  +  ++  + I+N +   G+ PD+ SY +LI+G C+ +K  +
Sbjct: 178 --IIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDK 235

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           A   F EM  K ++P  VT+ +L  GL +S  +    +L  ++ +  +
Sbjct: 236 AMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGV 283


>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
 gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
          Length = 892

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 140/285 (49%), Gaps = 26/285 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y +L+YG+C+   ++MA     +M+     P+V + + +++G+ +R  +  + R      
Sbjct: 268 YRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLG 327

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               ++  R AE++F  M  RG+EP+  +++I++H   +     
Sbjct: 328 ELGMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMD 387

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   + M+EKGI  TV  Y+S++   C       A  LL EMV  G+ PSA +Y+   
Sbjct: 388 DALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLI 447

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                + D   AM+L+R+M  +G+   N++++  LI  F     MD    +++ +  S +
Sbjct: 448 AGLCRKGDLASAMELHREMARNGVS-GNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSV 506

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            P+  ++ ++I G C     ++A Q + +M+++GL P   T+ +L
Sbjct: 507 VPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSL 551



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 127/261 (48%), Gaps = 12/261 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T+L+YG+CK  R+        EM  RGV+ +++++ V++    +   LH  E+       
Sbjct: 584 TTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALK---LHDGEKISV---- 636

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
              +F EM+ +G++PD    + ++ V+S+      +L+  + M   G  P V TY+ ++ 
Sbjct: 637 ---LFREMKEKGVKPDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLIN 693

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  G +  A+ L  EM+     P++ TYNCF        +   A  L+  + E   C+
Sbjct: 694 HLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEGELEKAKVLHATILEG--CL 751

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
            N  ++N LI  F    ++    ++  +   SG  PD  SY+ +I+ LC+     +A Q 
Sbjct: 752 ANTVTFNTLIKGFCKAGQIQGAIDLMQNNTESGFFPDCISYSTIINELCKVGDINKAFQL 811

Query: 243 FVEMIEKGLLPQKVTFETLYR 263
           + EM+ KGL P  V +  L R
Sbjct: 812 WNEMLYKGLKPDIVAYNILIR 832



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 125/286 (43%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+YG C+ NR+  A      M+ERG+  + VTY  L+ G CR      +E  E  + 
Sbjct: 233 YNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGFCR------TEELEMAL- 285

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++ D+M      P V S S ++    +      +      + E G+ P +   ++++
Sbjct: 286 ---EMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNALI 342

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R  +AE L   M   G+ P+  TY         R   + A+ ++ +M+E G+ 
Sbjct: 343 DKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGIR 402

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V  ++ YN LI  +   +     R + N++   GL P   SY+ LI GLC K     A +
Sbjct: 403 V-TVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAME 461

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              EM   G+     TF TL  G  +   +    RL  K+ + S+ 
Sbjct: 462 LHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVV 507



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 48/294 (16%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +LI   CK  R   AER    M  RG+EPN VTY +L++ +C+R  +           +A
Sbjct: 340 ALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMD----------DA 389

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             +FD MR +GI   V  ++ +++ Y +      +   LN M EKG+ P+ A+YS ++  
Sbjct: 390 LCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAG 449

Query: 124 LCSCGRIEDAEELLGEMVRNGV-----------------------------------CPS 148
           LC  G +  A EL  EM RNGV                                    P+
Sbjct: 450 LCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPN 509

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF-MALNRMDMVREI 207
             T+N   + Y    +   A +LY QM + GL  P+ ++Y  LI +  + L  M   +E 
Sbjct: 510 EVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGL-TPDNYTYRSLISVLCLTLGAMK-AKEF 567

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            +D++ + +  +  S T L++G C++ +  E    + EM  +G+    ++F  +
Sbjct: 568 VDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVI 621



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 133/287 (46%), Gaps = 11/287 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+ I  +C+I  +D A   L  M  +GV+ + V YNVL+ G+CR             +
Sbjct: 197 VYTAGIRAYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMYGLCR----------NNRV 246

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A +V + M  RGI  D  ++  +++ + R  + +++L+  + M      P+VA+ S +
Sbjct: 247 LEAVEVKNSMVERGIVADEVTYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFM 306

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  L   G I+ A  L   +   G+ P+    N    +    +    A +L+R M   GL
Sbjct: 307 VDGLRKRGHIDKAFRLACHLGELGMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGL 366

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  +Y ILI        MD    +++ ++  G+   +  Y  LI+G C+   + +A 
Sbjct: 367 -EPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQAR 425

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
               EM+EKGL P   ++  L  GL +   L +   L +++    ++
Sbjct: 426 GLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVS 472



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 11/174 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI   CK   +  A+    EM+     PN  TYN  L+ +     L  ++    TI 
Sbjct: 688 YTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEGELEKAKVLHATI- 746

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                     + G   +  +F+ ++  + +A Q Q ++D +    E G  P   +YS+++
Sbjct: 747 ----------LEGCLANTVTFNTLIKGFCKAGQIQGAIDLMQNNTESGFFPDCISYSTII 796

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
             LC  G I  A +L  EM+  G+ P    YN   +      + +  + +Y  M
Sbjct: 797 NELCKVGDINKAFQLWNEMLYKGLKPDIVAYNILIRWCNIHGEFDKGLGIYSDM 850



 Score = 44.3 bits (103), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 7/198 (3%)

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           Y R  + + + D L      GI     T S ++  L    +   A +L  EMV+      
Sbjct: 135 YLRLRRARDAADVLRLSLSSGIAMKQYTASQILFALIKIRQFALARDLFDEMVQCKFPLD 194

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGL---CVPNMHSYNILIGMFMALNRMDMVR 205
              Y    + Y   ++ +GA  L  +M+  G+    VP    YN+L+      NR+    
Sbjct: 195 EYVYTAGIRAYCEIRNLDGARGLLTRMESKGVKGSAVP----YNVLMYGLCRNNRVLEAV 250

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           E+ N +   G+  D  +Y  L++G C  ++ + A +   +M+    +P   +   +  GL
Sbjct: 251 EVKNSMVERGIVADEVTYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGL 310

Query: 266 IQSDMLRTWRRLKKKLDE 283
            +   +    RL   L E
Sbjct: 311 RKRGHIDKAFRLACHLGE 328


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 130/285 (45%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI    +  RI  A   L  M   G  PN+VTYN ++ G C               +
Sbjct: 393 YNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC----------ILGDPK 442

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V + M  RG   ++ +++ ++  Y  +     +L  L+ M++ G  P   +Y+ ++
Sbjct: 443 KAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI 502

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   ++E A  L  EMV +G+CP+  TY      Y   +  + A  L   MK  G C
Sbjct: 503 CGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSG-C 561

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN+LI      N      E+   +   G+ P++ +YT +I GLC+      A +
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F +MIE+G LP  +T+ +L R L Q   +     L  +L+   +
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGL 666



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 139/301 (46%), Gaps = 26/301 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC------------RRAS 49
           YTS+I G C+ + +D A +   +M + G EPN VTY+ L+NG+C            R   
Sbjct: 253 YTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI 312

Query: 50  LHPSERFEKTI-------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           LH       T               +A ++F +M+ +G EP+V +++ ++     +   +
Sbjct: 313 LHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLK 372

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           +++   + M   G+ P   TY++++  L    RI+ A  +L  M RNG  P+  TYN   
Sbjct: 373 VAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMI 432

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           K Y    D   AM +   M + G    N+ +YN +I  +           I + ++  G 
Sbjct: 433 KGYCILGDPKKAMLVMNNMLQRGHSA-NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC 491

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD  SYT LI G C+  K + A   F EM++ GL P +VT+  L  G  + + L T   
Sbjct: 492 KPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATS 551

Query: 277 L 277
           L
Sbjct: 552 L 552



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 132/267 (49%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G+C +     A   +  M++RG   N+VTYN ++ G C   +            
Sbjct: 428 YNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGN----------TT 477

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++ D MR  G +PD  S++ ++  + +  + + +    N M + G+CP   TY++++
Sbjct: 478 SALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALI 537

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   +++ A  LL  M R+G  P+ +TYN        + + +GA +L + M E+G+ 
Sbjct: 538 DGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGI- 596

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  +I          +  E++N +   G  P+L +Y+ LI  L ++ K +EA  
Sbjct: 597 FPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAEN 656

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F E+   GL+P ++T+  +    I S
Sbjct: 657 LFAELERHGLIPDEITYVKMIEAYIMS 683



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 116/240 (48%), Gaps = 11/240 (4%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M+  GV+PN++ YN ++N +C+  ++  +E   K +  +E          + PD  +++ 
Sbjct: 206 MLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESE----------MSPDTFTYTS 255

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           ++  + R H    +L   N M ++G  P   TYS+++  LC  GR+ +A +L+ EM+ +G
Sbjct: 256 MILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG 315

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           + P+A T                A +L+  MK  G C PN+++Y  LI        + + 
Sbjct: 316 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKG-CEPNVYTYTALISGLCVSGLLKVA 374

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             +++ +   G+ P+  +Y  LI+ L E ++ K A      M   G  P  VT+  + +G
Sbjct: 375 IGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKG 434



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 121/268 (45%), Gaps = 11/268 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I   CK   +  AE  + ++ E  + P+  TY  ++ G CR+  L          
Sbjct: 217 IYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD--------- 267

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A +VF++M   G EP+  ++S +++    + +   + D +  M   GI PT  T +  
Sbjct: 268 -SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGP 326

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G  EDA  L  +M   G  P+  TY               A+ L+ +M  DG+
Sbjct: 327 IIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGV 386

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  +YN LI + +   R+     + N +  +G  P++ +Y  +I G C     K+A 
Sbjct: 387 -FPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAM 445

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
                M+++G     VT+ T+ +G   S
Sbjct: 446 LVMNNMLQRGHSANLVTYNTIIKGYCDS 473



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 135/360 (37%), Gaps = 105/360 (29%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+CK  ++D A   L  M   G  PNV TYNVL++G+ +          +    
Sbjct: 533 YTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTK----------QNNFS 582

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE++   M   GI P+V +++ ++    +     L+L+  N M E+G  P + TYSS++
Sbjct: 583 GAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLI 642

Query: 122 KCLCSCGRIEDAEEL-----------------------------------LGEMVRNGVC 146
           + L   G++E+AE L                                   LG M++ G  
Sbjct: 643 RALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQ 702

Query: 147 PSAETY--------------------------NCFFKEYRGRKDANGAM----------- 169
           P+  TY                          NC F      +DA   M           
Sbjct: 703 PTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGL 762

Query: 170 ----------------------KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
                                 +L   M   GLC P+  +YN L+   + +  +D+   +
Sbjct: 763 SVQVQNALVSNLSTAGRWFEANELLGSMISQGLC-PDQEAYNSLLCSLLRVRNVDLAMGV 821

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           +  +   G    L+ Y  LI  LC+  + KEA   F  M+ +   P  V    L  GL++
Sbjct: 822 FKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLR 881



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 113/238 (47%), Gaps = 5/238 (2%)

Query: 49  SLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK 108
           S H  E   +T+       D +   G+   + ++S +L   SR       +D+ + M  +
Sbjct: 154 SCHSKEAMARTM----SFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE 209

Query: 109 GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGA 168
           G+ P +  Y++V+  LC  G + DAE ++ ++  + + P   TY      +  + D + A
Sbjct: 210 GVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSA 269

Query: 169 MKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228
           ++++ QM ++G C PN  +Y+ LI       R++   ++  ++   G+ P   + T  I 
Sbjct: 270 LQVFNQMAKEG-CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPII 328

Query: 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            LC+   +++A + FV+M  KG  P   T+  L  GL  S +L+    L  ++  + +
Sbjct: 329 ALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGV 386



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 113/251 (45%), Gaps = 31/251 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I  +    +++ A  FLG MI+ G +P + TY VL+ G                ++
Sbjct: 673 YVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKG----------------LK 716

Query: 62  NAEKVFDEMRVRGIEPDVT---SFSIVLHVYSRAHQPQLSLDKLNFMK-EKGICPTVATY 117
           N E +  + R+  + PDV    SF      Y    Q  +S+      + + G+  +V   
Sbjct: 717 N-EYLLADQRLAAL-PDVVPNCSFG-----YQTTDQDAVSVMSAKLAELDPGL--SVQVQ 767

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           +++V  L + GR  +A ELLG M+  G+CP  E YN         ++ + AM +++ M  
Sbjct: 768 NALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMST 827

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G C  +++ Y  LI     L+R    R  + ++      PD     +LI GL  +  +K
Sbjct: 828 QG-CEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLL-RDGYK 885

Query: 238 EACQYFVEMIE 248
           + C  F+ ++E
Sbjct: 886 DLCMEFLHIME 896


>gi|359476071|ref|XP_003631786.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 629

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 125/267 (46%), Gaps = 11/267 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y    +  C+ N+   A   L  M+E+G+ P  V+YN +LNG CR          E  I
Sbjct: 292 VYNIYFHCLCRENKSGEALSLLQSMVEKGLVPTNVSYNTILNGFCR----------ENHI 341

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++FD        PDV SF+ +L    +     +    L  M+ +G+   V + + +
Sbjct: 342 DEALQLFDHFEWANNSPDVVSFNTILSAACKQGNSSMIRRVLYRMEYEGVKLNVVSSTCL 401

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C+ G+I +  ELL  M+RNG+ P+  T+N    +         A +++R+ +  G 
Sbjct: 402 IQYFCAIGKISECLELLESMIRNGLNPTVVTFNMLLDKLCKNGLLGTAHRIFREFRNTGY 461

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  SYNILI   +      +V ++  D+    L PD  +Y   I GLC++ K   A 
Sbjct: 462 -FPNTTSYNILIHASIREGNDSLVEQLLRDMYSWRLKPDAVTYGSFIKGLCKEGKISVAI 520

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           Q   +M+E GL P    + T+   + Q
Sbjct: 521 QLRDQMLESGLTPTITIYNTILAAMFQ 547



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 86/189 (45%), Gaps = 11/189 (5%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T LI  +C I +I      L  MI  G+ P VVT+N+LL+ +C+   L            
Sbjct: 399 TCLIQYFCAIGKISECLELLESMIRNGLNPTVVTFNMLLDKLCKNGLLG----------T 448

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A ++F E R  G  P+ TS++I++H   R     L    L  M    + P   TY S +K
Sbjct: 449 AHRIFREFRNTGYFPNTTSYNILIHASIREGNDSLVEQLLRDMYSWRLKPDAVTYGSFIK 508

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  G+I  A +L  +M+ +G+ P+   YN        R      + L + M  DG C 
Sbjct: 509 GLCKEGKISVAIQLRDQMLESGLTPTITIYNTILAAMFQRGKFWDIVSLLKDMTMDG-CE 567

Query: 183 PNMHSYNIL 191
           PN  S  IL
Sbjct: 568 PNAVSIEIL 576



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 138/334 (41%), Gaps = 59/334 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+YG+ K    + A   L EM   G +PNV+TY V++  +C           E  I 
Sbjct: 153 YTALVYGFSKEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKFLCD----------EGRIG 202

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVL-HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           +A  +  +M   G +PD+ +++++L  ++ +    ++  + L  + +K I P   TY+++
Sbjct: 203 DALDILGKMGKEGCDPDIVTYNVILRELFHQDRYVEIG-ELLQVIDQKEISPDSFTYAAL 261

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              L    ++  A +LL  ++  G       YN +F        +  A+ L + M E GL
Sbjct: 262 TGGLLKRDQVRVANKLLLYVISAGCTVDVAVYNIYFHCLCRENKSGEALSLLQSMVEKGL 321

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSY----------------- 223
            VP   SYN ++  F   N +D   ++++  + +   PD+ S+                 
Sbjct: 322 -VPTNVSYNTILNGFCRENHIDEALQLFDHFEWANNSPDVVSFNTILSAACKQGNSSMIR 380

Query: 224 ------------------TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
                             T LI   C   K  E  +    MI  GL P  VTF  L   L
Sbjct: 381 RVLYRMEYEGVKLNVVSSTCLIQYFCAIGKISECLELLESMIRNGLNPTVVTFNMLLDKL 440

Query: 266 IQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
            ++ +L T  R+ +           EF+N  + P
Sbjct: 441 CKNGLLGTAHRIFR-----------EFRNTGYFP 463



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 15/232 (6%)

Query: 36  TYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           +YN +L  +C+    +           A  +   ++  G   +  S++ +++ +S+    
Sbjct: 117 SYNPILWALCKCGQSY----------TALALLYSLKKMGAVHNAASYTALVYGFSKEGLW 166

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + +   L+ MK  G  P V TY+ +VK LC  GRI DA ++LG+M + G  P   TYN  
Sbjct: 167 EEAFCMLDEMKIDGCKPNVITYTVIVKFLCDEGRIGDALDILGKMGKEGCDPDIVTYNVI 226

Query: 156 FKE--YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
            +E  ++ R    G +      KE     P+  +Y  L G  +  +++ +  ++   V  
Sbjct: 227 LRELFHQDRYVEIGELLQVIDQKEIS---PDSFTYAALTGGLLKRDQVRVANKLLLYVIS 283

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +G   D+  Y +  H LC + K  EA      M+EKGL+P  V++ T+  G 
Sbjct: 284 AGCTVDVAVYNIYFHCLCRENKSGEALSLLQSMVEKGLVPTNVSYNTILNGF 335



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 137/324 (42%), Gaps = 41/324 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR-------------- 47
           YT ++   C   RI  A   LG+M + G +P++VTYNV+L  +  +              
Sbjct: 188 YTVIVKFLCDEGRIGDALDILGKMGKEGCDPDIVTYNVILRELFHQDRYVEIGELLQVID 247

Query: 48  -----------ASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                      A+L         +R A K+   +   G   DV  ++I  H   R ++  
Sbjct: 248 QKEISPDSFTYAALTGGLLKRDQVRVANKLLLYVISAGCTVDVAVYNIYFHCLCRENKSG 307

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L  L  M EKG+ PT  +Y++++   C    I++A +L          P   ++N   
Sbjct: 308 EALSLLQSMVEKGLVPTNVSYNTILNGFCRENHIDEALQLFDHFEWANNSPDVVSFNTIL 367

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                + +++   ++  +M+ +G+ + N+ S   LI  F A+ ++    E+   +  +GL
Sbjct: 368 SAACKQGNSSMIRRVLYRMEYEGVKL-NVVSSTCLIQYFCAIGKISECLELLESMIRNGL 426

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ-------SD 269
            P + ++ ML+  LC+      A + F E    G  P   ++  L    I+         
Sbjct: 427 NPTVVTFNMLLDKLCKNGLLGTAHRIFREFRNTGYFPNTTSYNILIHASIREGNDSLVEQ 486

Query: 270 MLR---TWRRLKKKLDEESITFGS 290
           +LR   +WR     L  +++T+GS
Sbjct: 487 LLRDMYSWR-----LKPDAVTYGS 505



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/294 (19%), Positives = 119/294 (40%), Gaps = 26/294 (8%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEK-------------------------TIRNA 63
           G  PN  T+N+LL+G+    +L  +  F +                         ++ ++
Sbjct: 5   GPYPNASTFNILLDGMTSTGNLRAAFFFAEEMWRSGFLPSFTSLLKILKKWLGLGSLVDS 64

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             VF+ M      P   + ++++ + S+A   + +      +  KG      +Y+ ++  
Sbjct: 65  MSVFEFMLRLEYFPTEPTLNLLISMLSKAGMAREAHFVFRVLLGKGCLKCAHSYNPILWA 124

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC CG+   A  LL  + + G   +A +Y      +        A  +  +MK DG C P
Sbjct: 125 LCKCGQSYTALALLYSLKKMGAVHNAASYTALVYGFSKEGLWEEAFCMLDEMKIDG-CKP 183

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N+ +Y +++       R+    +I   +   G  PD+ +Y +++  L  + ++ E  +  
Sbjct: 184 NVITYTVIVKFLCDEGRIGDALDILGKMGKEGCDPDIVTYNVILRELFHQDRYVEIGELL 243

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
             + +K + P   T+  L  GL++ D +R   +L   +     T      N +F
Sbjct: 244 QVIDQKEISPDSFTYAALTGGLLKRDQVRVANKLLLYVISAGCTVDVAVYNIYF 297



 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 10/90 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S I G CK  +I +A +   +M+E G+ P +  YN +L  + +R       +F   + 
Sbjct: 503 YGSFIKGLCKEGKISVAIQLRDQMLESGLTPTITIYNTILAAMFQRG------KFWDIV- 555

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
               +  +M + G EP+  S  I+    S+
Sbjct: 556 ---SLLKDMTMDGCEPNAVSIEILKQAMSK 582


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 133/276 (48%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G CK   ++   R  G M   GV P+V T++ L+NG+C+          E  + 
Sbjct: 286 FNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCK----------EGRLD 335

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +FDEM  RG+ P+  +F+ ++    +  +  L+L     M  +G+ P + TY++++
Sbjct: 336 EGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALI 395

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +++A  L+ EM  +G+ P   T+           D   A+++ R+M E+G+ 
Sbjct: 396 NGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIE 455

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++ ++  LI       R+     +  D+  +G  PD  +YTM+I   C+K   K   +
Sbjct: 456 LDDV-AFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFK 514

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
              EM   G +P  VT+  L  GL +   ++  + L
Sbjct: 515 LLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKML 550



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 118/242 (48%), Gaps = 11/242 (4%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           E+++ G  P +  +NVL++G C+             + NA  VFDE+  RG+ P V SF+
Sbjct: 238 EVLDSGYPPKIYFFNVLMHGFCKAGD----------VGNARLVFDEIPKRGLRPTVVSFN 287

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            ++    ++   +        M+ +G+CP V T+S+++  LC  GR+++   L  EM   
Sbjct: 288 TLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGR 347

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+ P+  T+             + A+K ++ M   G+  P++ +YN LI     +  +  
Sbjct: 348 GLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGV-RPDLVTYNALINGLCKVGDLKE 406

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            R + N++  SGL PD  ++T LI G C+    + A +    M+E+G+    V F  L  
Sbjct: 407 ARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALIS 466

Query: 264 GL 265
           GL
Sbjct: 467 GL 468



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 94/191 (49%), Gaps = 14/191 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G CK   ++ A      M+E G+E + V +  L++G+CR   +H          
Sbjct: 426 FTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVH---------- 475

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  +M   G +PD  ++++V+  + +    ++    L  M+  G  P V TY++++
Sbjct: 476 DAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALM 535

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++++A+ LL  M+  GV P+  TYN       G      ++ +     E GL 
Sbjct: 536 NGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLD---GHSKHGSSVDVDIFNSEKGL- 591

Query: 182 VPNMHSYNILI 192
           V +  SY  L+
Sbjct: 592 VTDYASYTALV 602



 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 13/96 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G CK  ++  A+  L  M+  GV PN +TYN+LL+G  +  S       +  I 
Sbjct: 531 YNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHGS-----SVDVDIF 585

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
           N+EK        G+  D  S++ +++  S+  +  L
Sbjct: 586 NSEK--------GLVTDYASYTALVNESSKTSKDHL 613


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 130/285 (45%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI    +  RI  A   L  M   G  PN+VTYN ++ G C               +
Sbjct: 393 YNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC----------ILGDPK 442

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V + M  RG   ++ +++ ++  Y  +     +L  L+ M++ G  P   +Y+ ++
Sbjct: 443 KAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI 502

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   ++E A  L  EMV +G+CP+  TY      Y   +  + A  L   MK  G C
Sbjct: 503 CGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSG-C 561

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN+LI      N      E+   +   G+ P++ +YT +I GLC+      A +
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F +MIE+G LP  +T+ +L R L Q   +     L  +L+   +
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGL 666



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 139/301 (46%), Gaps = 26/301 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC------------RRAS 49
           YTS+I G C+ + +D A +   +M + G EPN VTY+ L+NG+C            R   
Sbjct: 253 YTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI 312

Query: 50  LHPSERFEKTI-------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           LH       T               +A ++F +M+ +G EP+V +++ ++     +   +
Sbjct: 313 LHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILK 372

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           +++   + M   G+ P   TY++++  L    RI+ A  +L  M RNG  P+  TYN   
Sbjct: 373 VAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMI 432

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           K Y    D   AM +   M + G    N+ +YN +I  +           I + ++  G 
Sbjct: 433 KGYCILGDPKKAMLVMNNMLQRGHSA-NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC 491

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD  SYT LI G C+  K + A   F EM++ GL P +VT+  L  G  + + L T   
Sbjct: 492 KPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATS 551

Query: 277 L 277
           L
Sbjct: 552 L 552



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 132/267 (49%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G+C +     A   +  M++RG   N+VTYN ++ G C   +            
Sbjct: 428 YNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGN----------TT 477

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++ D MR  G +PD  S++ ++  + +  + + +    N M + G+CP   TY++++
Sbjct: 478 SALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALI 537

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   +++ A  LL  M R+G  P+ +TYN        + + +GA +L + M E+G+ 
Sbjct: 538 DGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGI- 596

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  +I          +  E++N +   G  P+L +Y+ LI  L ++ K +EA  
Sbjct: 597 FPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAEN 656

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F E+   GL+P ++T+  +    I S
Sbjct: 657 LFAELERHGLIPDEITYVKMIEAYIMS 683



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 129/284 (45%), Gaps = 11/284 (3%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T  I   C +   + A R   +M  +G EPNV TY  L++G+C              ++ 
Sbjct: 324 TGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLC----------VSGILKV 373

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  +F  M   G+ P+  +++ ++++     + + +   LN M   G  P + TY+ ++K
Sbjct: 374 AIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIK 433

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C  G  + A  ++  M++ G   +  TYN   K Y    +   A+++   M+ DG C 
Sbjct: 434 GYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMR-DGGCK 492

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+  SY  LI  F  +++M+    ++N++   GL P+  +YT LI G C+ +K   A   
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSL 552

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              M   G  P   T+  L  GL + +       L K + EE I
Sbjct: 553 LEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGI 596



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 116/240 (48%), Gaps = 11/240 (4%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M+  GV+PN++ YN ++N +C+  ++  +E   K +  +E          + PD  +++ 
Sbjct: 206 MLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESE----------MSPDTFTYTS 255

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           ++  + R H    +L   N M ++G  P   TYS+++  LC  GR+ +A +L+ EM+ +G
Sbjct: 256 MILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG 315

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           + P+A T                A +L+  MK  G C PN+++Y  LI        + + 
Sbjct: 316 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKG-CEPNVYTYTALISGLCVSGILKVA 374

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             +++ +   G+ P+  +Y  LI+ L E ++ K A      M   G  P  VT+  + +G
Sbjct: 375 IGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKG 434



 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 121/268 (45%), Gaps = 11/268 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I   CK   +  AE  + ++ E  + P+  TY  ++ G CR+  L          
Sbjct: 217 IYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD--------- 267

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A +VF++M   G EP+  ++S +++    + +   + D +  M   GI PT  T +  
Sbjct: 268 -SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGP 326

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G  EDA  L  +M   G  P+  TY               A+ L+ +M  DG+
Sbjct: 327 IIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGV 386

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  +YN LI + +   R+     + N +  +G  P++ +Y  +I G C     K+A 
Sbjct: 387 -FPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAM 445

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
                M+++G     VT+ T+ +G   S
Sbjct: 446 LVMNNMLQRGHSANLVTYNTIIKGYCDS 473



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 135/360 (37%), Gaps = 105/360 (29%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+CK  ++D A   L  M   G  PNV TYNVL++G+ +          +    
Sbjct: 533 YTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTK----------QNNFS 582

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE++   M   GI P+V +++ ++    +     L+L+  N M E+G  P + TYSS++
Sbjct: 583 GAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLI 642

Query: 122 KCLCSCGRIEDAEEL-----------------------------------LGEMVRNGVC 146
           + L   G++E+AE L                                   LG M++ G  
Sbjct: 643 RALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQ 702

Query: 147 PSAETY--------------------------NCFFKEYRGRKDANGAM----------- 169
           P+  TY                          NC F      +DA   M           
Sbjct: 703 PTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGL 762

Query: 170 ----------------------KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
                                 +L   M   GLC P+  +YN L+   + +  +D+   +
Sbjct: 763 SVQVQNALVSNLSTAGRWFEANELLGSMISQGLC-PDQEAYNSLLCSLLRVRNVDLAMGV 821

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           +  +   G    L+ Y  LI  LC+  + KEA   F  M+ +   P  V    L  GL++
Sbjct: 822 FKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLR 881



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 113/238 (47%), Gaps = 5/238 (2%)

Query: 49  SLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK 108
           S H  E   +T+       D +   G+   + ++S +L   SR       +D+ + M  +
Sbjct: 154 SCHSKEAMARTM----SFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE 209

Query: 109 GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGA 168
           G+ P +  Y++V+  LC  G + DAE ++ ++  + + P   TY      +  + D + A
Sbjct: 210 GVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSA 269

Query: 169 MKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228
           ++++ QM ++G C PN  +Y+ LI       R++   ++  ++   G+ P   + T  I 
Sbjct: 270 LQVFNQMAKEG-CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPII 328

Query: 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            LC+   +++A + FV+M  KG  P   T+  L  GL  S +L+    L  ++  + +
Sbjct: 329 ALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGV 386



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 113/251 (45%), Gaps = 31/251 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I  +    +++ A  FLG MI+ G +P + TY VL+ G                ++
Sbjct: 673 YVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKG----------------LK 716

Query: 62  NAEKVFDEMRVRGIEPDVT---SFSIVLHVYSRAHQPQLSLDKLNFMK-EKGICPTVATY 117
           N E +  + R+  + PDV    SF      Y    Q  +S+      + + G+  +V   
Sbjct: 717 N-EYLLADQRLAAL-PDVVPNCSFG-----YQTTDQDAVSVMSAKLAELDPGL--SVQVQ 767

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           +++V  L + GR  +A ELLG M+  G+CP  E YN         ++ + AM +++ M  
Sbjct: 768 NALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMST 827

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G C  +++ Y  LI     L+R    R  + ++      PD     +LI GL  +  +K
Sbjct: 828 QG-CEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLL-RDGYK 885

Query: 238 EACQYFVEMIE 248
           + C  F+ ++E
Sbjct: 886 DLCMEFLHIME 896


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 135/278 (48%), Gaps = 3/278 (1%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++   C+   +D     L ++   G EP++V+YN +L G+C        E     +    
Sbjct: 184 VVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVH 243

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           +   +M   G  PD+  ++ ++    +    +++ D L+ M   G+ P V  Y++V+K L
Sbjct: 244 EALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGL 303

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAE-TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           CS  R E+AE+LL EM +   CP  + T+N     +      +  ++L  QM E G C+P
Sbjct: 304 CSAERWEEAEDLLAEMFQED-CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHG-CIP 361

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++ +Y  +I  F     +D    +  ++   G  P+  SYT+++ GLC  ++W +A +  
Sbjct: 362 DVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELI 421

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
             MI++G LP  VTF TL   + +  +      L K++
Sbjct: 422 SHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQM 459



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 125/265 (47%), Gaps = 11/265 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++I G CK    ++A   L  M   G++PNVV YN +L G+C       +ER+E+  
Sbjct: 260 MYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCS------AERWEE-- 311

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE +  EM       D  +F+I++  + +       ++ L  M E G  P V TY++V
Sbjct: 312 --AEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTV 369

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G +++A  LL  M   G  P+  +Y    K     +    A +L   M + G 
Sbjct: 370 INGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQG- 428

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C+PN  ++N LI         +   E+   +  +G  PDL SY+ +I GL +  K +EA 
Sbjct: 429 CLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 488

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
           +    MI KG+ P  + + ++   L
Sbjct: 489 ELLNVMINKGITPNTIIYSSMASAL 513



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 130/280 (46%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+  +C+   +D     L +M+E G  P+V+TY  ++NG C+          E  + 
Sbjct: 331 FNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCK----------EGLVD 380

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M   G +P+  S++IVL    RA +   + + ++ M ++G  P   T+++++
Sbjct: 381 EAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLI 440

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G  E A ELL +M+ NG  P   +Y+              A++L   M   G+ 
Sbjct: 441 NFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGI- 499

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN   Y+ +        R D + ++++ ++ + +  D   Y  +I  LC++ +   A  
Sbjct: 500 TPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAID 559

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +F  M+  G +P + T+  L RGL    ++R  + L  +L
Sbjct: 560 FFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLSEL 599



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 117/248 (47%), Gaps = 11/248 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+CK   +D A   L  M   G +PN ++Y ++L G+CR      +ER+     
Sbjct: 366 YTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCR------AERW----V 415

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A+++   M  +G  P+  +F+ +++   +    + +++ L  M   G  P + +YS+V+
Sbjct: 416 DAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVI 475

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G+ E+A ELL  M+  G+ P+   Y+            +  ++++  + +D   
Sbjct: 476 DGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSI-QDATV 534

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +   YN +I         D   + +  +  +G  P+  +YT+LI GL  +   +EA  
Sbjct: 535 RSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQD 594

Query: 242 YFVEMIEK 249
              E+  +
Sbjct: 595 LLSELCSR 602



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 120/317 (37%), Gaps = 37/317 (11%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH----------- 51
           ++LI   C   R   A R L      G    VV YN ++ G CR   +            
Sbjct: 48  SALIRSLCAAGRTADAARALDT---AGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAVPV 104

Query: 52  PSERFE-----------KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLD 100
           P   +              I +A  V DEM +RG         ++L    R    + ++ 
Sbjct: 105 PPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVR 164

Query: 101 KLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160
            L  +  KG        + VV  +C  G +++  ELL ++   G  P   +YN   K   
Sbjct: 165 ALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLC 224

Query: 161 GRKDANGAMKL----------YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
             K  +   +L            QM E G C P++  Y  +I         ++  +I + 
Sbjct: 225 MAKRWDDVEELMVEMVRVHEALSQMPEHG-CTPDLRMYATIIDGICKDGHHEVANDILSR 283

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           +   GL P++  Y  ++ GLC  ++W+EA     EM ++      VTF  L     Q+ +
Sbjct: 284 MPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGL 343

Query: 271 L-RTWRRLKKKLDEESI 286
           + R    L++ L+   I
Sbjct: 344 VDRVIELLEQMLEHGCI 360


>gi|224107981|ref|XP_002314676.1| predicted protein [Populus trichocarpa]
 gi|222863716|gb|EEF00847.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 133/278 (47%), Gaps = 11/278 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L  G+CK      A + + EM ERG  PNVV+Y   +               +K  R
Sbjct: 278 YNILSSGYCKARMFGDARKTMEEMEERGFHPNVVSYTAFIEAYGE----------QKDFR 327

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N E + +EM+ +G  PD+ ++++ +    +A Q   +L+    +K  G       Y S++
Sbjct: 328 NVEIILNEMQEKGCPPDLITYTVYIRALGKARQINKALEICEEIKRNGFVLGTQFYCSLI 387

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR++DA  +  ++ + GV      Y               A+KL  +M+ED  C
Sbjct: 388 HSLCLSGRLKDAWNIFEDVEKQGVGRDLGMYKAMISAACALSQDESALKLLHKMEEDS-C 446

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  L+ M      M M++ + N +  + +  D+ +Y +L+HGL ++ K K AC 
Sbjct: 447 KPDVQTYAPLLKMCCRKKSMKMLKFLLNHMFENDVSIDIVTYDLLVHGLRKQGKLKYACF 506

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
           +F E + KG++P   T++ L   L + +M     +++K
Sbjct: 507 FFQEAVLKGMVPCDKTYKILLEELERKNMAEMKGKIEK 544



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 1/186 (0%)

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           D  S++I+   Y +A     +   +  M+E+G  P V +Y++ ++         + E +L
Sbjct: 274 DYRSYNILSSGYCKARMFGDARKTMEEMEERGFHPNVVSYTAFIEAYGEQKDFRNVEIIL 333

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            EM   G  P   TY  + +     +  N A+++  ++K +G  V     Y  LI     
Sbjct: 334 NEMQEKGCPPDLITYTVYIRALGKARQINKALEICEEIKRNGF-VLGTQFYCSLIHSLCL 392

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
             R+     I+ DV+  G+G DL  Y  +I   C   + + A +   +M E    P   T
Sbjct: 393 SGRLKDAWNIFEDVEKQGVGRDLGMYKAMISAACALSQDESALKLLHKMEEDSCKPDVQT 452

Query: 258 FETLYR 263
           +  L +
Sbjct: 453 YAPLLK 458



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 10/174 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+  C   R+  A     ++ ++GV  ++  Y  +++  C   +L   E       
Sbjct: 383 YCSLIHSLCLSGRLKDAWNIFEDVEKQGVGRDLGMYKAMISAAC---ALSQDE------- 432

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+  +M     +PDV +++ +L +  R    ++    LN M E  +   + TY  +V
Sbjct: 433 SALKLLHKMEEDSCKPDVQTYAPLLKMCCRKKSMKMLKFLLNHMFENDVSIDIVTYDLLV 492

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
             L   G+++ A     E V  G+ P  +TY    +E   +  A    K+ + M
Sbjct: 493 HGLRKQGKLKYACFFFQEAVLKGMVPCDKTYKILLEELERKNMAEMKGKIEKLM 546



 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 75/182 (41%), Gaps = 6/182 (3%)

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK--EYRGRKDANGAMK 170
           ++ T   V+K L   G+  +A +    + + G+  S E  N         GR +   A+ 
Sbjct: 205 SLVTMGKVMKRLVRDGKYNEAIDAFRGLEKFGLSKSTEAMNVLMDILARNGRVEDARAVA 264

Query: 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           L    + +G    +  SYNIL   +         R+   +++  G  P++ SYT  I   
Sbjct: 265 L----EFEGCLTLDYRSYNILSSGYCKARMFGDARKTMEEMEERGFHPNVVSYTAFIEAY 320

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
            E++ ++       EM EKG  P  +T+    R L ++  +     + +++       G+
Sbjct: 321 GEQKDFRNVEIILNEMQEKGCPPDLITYTVYIRALGKARQINKALEICEEIKRNGFVLGT 380

Query: 291 EF 292
           +F
Sbjct: 381 QF 382


>gi|326531326|dbj|BAK05014.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 537

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 129/256 (50%), Gaps = 14/256 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  ++ GWC    +  A+R   E+I   ++P++ TY   +N + +   L           
Sbjct: 255 WNIILNGWCVKGSLPDAKRVWNEIIASKLKPDLFTYGTFINALTKAGKLS---------- 304

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F  M  +GI PDV   + ++       +   +L     M ++G    VATY++++
Sbjct: 305 TAVKLFTSMWEKGINPDVAICNCIIDQLCFKKKIPEALKIFGEMNDRGCQADVATYNTLI 364

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R E   ELL +M + G  P+  TY    K     +D    M L ++M+E G C
Sbjct: 365 KHFCKIRRTEKVYELLDDMEKKGCSPNNMTYTYILKTTEKPRDV---MNLIQRMEESG-C 420

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  +YN+++ +++++     V+++W +++ +G GPD  S+T+++HGL  + +  +A Q
Sbjct: 421 KLDSDTYNLILNLYVSMKYEKGVQQVWEEMERNGSGPDQRSFTIMVHGLHSQGQLDQALQ 480

Query: 242 YFVEMIEKGLLPQKVT 257
           Y+  M  +G+ P+  T
Sbjct: 481 YYTTMKSRGMTPEPRT 496



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 97/208 (46%), Gaps = 4/208 (1%)

Query: 58  KTIRNAEKVFDEM--RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA 115
           K +R   ++FDE+  + RG+      F+++L+ Y+ AH+ Q +++      + G    + 
Sbjct: 160 KKVRLMRQLFDEIPEQRRGLVVTNRMFAVLLNRYAGAHKVQEAIEIFYKRNDYGFEVDLV 219

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
            +  ++  LC    +E+AE L  +  ++   P  +++N     +  +     A +++ ++
Sbjct: 220 GFQILLMSLCRYKHVEEAEALFLQK-KDEFPPVIKSWNIILNGWCVKGSLPDAKRVWNEI 278

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
               L  P++ +Y   I       ++    +++  +   G+ PD+     +I  LC K+K
Sbjct: 279 IASKL-KPDLFTYGTFINALTKAGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKK 337

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYR 263
             EA + F EM ++G      T+ TL +
Sbjct: 338 IPEALKIFGEMNDRGCQADVATYNTLIK 365


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 126/244 (51%), Gaps = 11/244 (4%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M ER V P+V TYN+L++G+C+ +              A ++  EM  RG+ PD  +F+ 
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTD----------KASEMLHEMVDRGVTPDTVTFNS 50

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           ++    +A + + +   L  M E+   P+  TY++++  LC    ++ A+ L+ E V +G
Sbjct: 51  IMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSG 110

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
             P   TY+        R   + A +L ++M  +G C PN+ +YN LI      ++ +  
Sbjct: 111 FVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNG-CTPNLVTYNTLIDGLCKASKTEKA 169

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            E+   +  SG  PD+ +YT+++ GLC++ +  +A +    M+++G  P  +T+  L  G
Sbjct: 170 YELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEG 229

Query: 265 LIQS 268
           L ++
Sbjct: 230 LCRT 233



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 138/285 (48%), Gaps = 14/285 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L  G CK  RID A   + EM   G  PN+VTYN L++G+C+      + + EK   
Sbjct: 118 YSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCK------ASKTEK--- 168

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ + +   G  PDV +++I++    +  +   +L  +  M ++G  P+V TY++++
Sbjct: 169 -AYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALM 227

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  GR+++A  +  EMV       A  Y      Y        A K+   ++     
Sbjct: 228 EGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG---- 283

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P +  YN L+  +    R+D +  ++ D+   G  P++ +Y +++ GLC+  K  EA  
Sbjct: 284 TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFP 343

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +   M   G +P  V++  +  GL ++   +  R++  ++ +  I
Sbjct: 344 FLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGI 388



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 127/276 (46%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G CK ++ D A   L EM++RGV P+ VT+N +++G+C+      + +FE+   
Sbjct: 13  YNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCK------AGKFER--- 63

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M  R   P   +++ ++    +      +   ++     G  P V TYS + 
Sbjct: 64  -AHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILA 122

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GRI++A EL+ EM  NG  P+  TYN              A +L   +   G  
Sbjct: 123 DGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGF- 181

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++ +Y I++       R+D   ++   +   G  P + +YT L+ GLC   +  EA  
Sbjct: 182 VPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHH 241

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F EM+ K      + + +L  G  +S   +  +++
Sbjct: 242 IFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKV 277



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 135/281 (48%), Gaps = 13/281 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +L+ G+CK  R+D       +M  RG  PN+ TYN++++G+C+   +  +  F +++
Sbjct: 289 VYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESM 348

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A          G  PDV S++I++    +A +P+ +   L+ M + GI P   TY+++
Sbjct: 349 HSA----------GCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTL 398

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C   R +DA  +L  M++ GV P   TYN              A +L  +M  +G 
Sbjct: 399 MAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGC 458

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            V    +YN +I        +     + + + G G+  +  +Y + I  LC++ +  EA 
Sbjct: 459 VVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEAS 518

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
               EM     L  +V++ T+  GL +++ L    +L +++
Sbjct: 519 SLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREM 556



 Score =  100 bits (248), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 151/322 (46%), Gaps = 47/322 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTI 60
           Y +L+  +CK  R D A   L  MI+ GV+P+ VTYN L++G+ +   L  + E   + +
Sbjct: 395 YNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEML 454

Query: 61  RN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVY---SRA 92
           RN                         A  + D M   G+E +  +++I +       R 
Sbjct: 455 RNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRL 514

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR-NGVCPSAET 151
            +    L +++ ++++       +Y++V+  LC   +++ A +L  EMV   G+C ++ T
Sbjct: 515 DEASSLLSEMDTLRDE------VSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHT 568

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           +N     +   K  + A+ L   M + G C P++ +YN++I     L+++D   E+++++
Sbjct: 569 FNLLIDAFTKTKRLDEALTLLELMVQRG-CSPSVITYNMVITCLCKLDKVDKAWELFDEM 627

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY-------RG 264
              G+     SYT+LI+GLC + + KEA Q   EM         +    LY       RG
Sbjct: 628 AVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRG 687

Query: 265 LIQSDMLRTWRRLKKKLDEESI 286
              +++L   RR+  K+D  S+
Sbjct: 688 EEAAELL---RRMTTKMDSLSL 706


>gi|218191356|gb|EEC73783.1| hypothetical protein OsI_08468 [Oryza sativa Indica Group]
          Length = 616

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 142/289 (49%), Gaps = 24/289 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L  GWC++     A   L  M+E G+ P   TYN++L G  R   L          R
Sbjct: 202 YNTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQL----------R 251

Query: 62  NAEKVFDEMRVRG-----IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           +A   F +M+ RG      +PDV S++ ++H    A Q + +    + M ++G  P+VAT
Sbjct: 252 HAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVAT 311

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+++++ +C  G +EDA  +   M+  G  P+  TY    +        +  +KL  +MK
Sbjct: 312 YNALIQVICKKGNVEDAVTVFDGMLVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMK 371

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV-KGSGLGPDLDSYTMLIHGLCEKQK 235
             G C P + +YN+LI        M+   +++  + KG    P+ D+Y ++I  +  +++
Sbjct: 372 NGG-CEPIVQTYNVLIRYLFEEGEMEKGLDLFEKMSKGEECLPNQDTYNIIISAMFMRKR 430

Query: 236 WKE---ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            ++   A +   EM+++G LP++  F  +  GL    ML   + L +KL
Sbjct: 431 AEDMVLAARMVDEMVDRGYLPRRFMFNRVLNGL----MLTGNQELSRKL 475



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 103/237 (43%), Gaps = 21/237 (8%)

Query: 50  LHPSERFEKTIRNAEKVFDEMRVRGIEPDVT-SFSIVLHVYSRAHQ--PQLS--LDKLNF 104
           L P  R   T R    +F+ + V    PD+     + LH   R  Q  P  +  LD L+ 
Sbjct: 118 LFPRHRLAFTPRTFPILFERLAVSQRRPDLAVRLFLSLHRSHRVAQDLPLFNSLLDALSK 177

Query: 105 MKEKG------------ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
            +  G              P V TY+++    C       A ++L  MV +G+ P+  TY
Sbjct: 178 SRHAGKAASLVRALEQRFTPDVVTYNTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTY 237

Query: 153 NCFFKEYRGRKDANGAMKLYRQMKEDGL----CVPNMHSYNILIGMFMALNRMDMVREIW 208
           N   K +        A   + QMK+ G     C P++ SY  ++       +++  R+++
Sbjct: 238 NIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVF 297

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +++   G  P + +Y  LI  +C+K   ++A   F  M+ KG +P  VT+  L RGL
Sbjct: 298 DEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMLVKGYVPNVVTYTVLIRGL 354



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 114/275 (41%), Gaps = 58/275 (21%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ SL+    K      A   +   +E+   P+VVTYN L +G CR             +
Sbjct: 167 LFNSLLDALSKSRHAGKAASLV-RALEQRFTPDVVTYNTLADGWCR-------------V 212

Query: 61  RNAEKVFDEMRV---RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGI----C-P 112
           ++  +  D +R+    GI P  T+++I+L  + RA Q + + D    MK++G     C P
Sbjct: 213 KDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKP 272

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
            V +Y+++V  L   G++E A ++  EM + G                            
Sbjct: 273 DVVSYTTMVHGLGVAGQLEKARKVFDEMAKEG---------------------------- 304

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
                   C P++ +YN LI +      ++    +++ +   G  P++ +YT+LI GLC 
Sbjct: 305 --------CAPSVATYNALIQVICKKGNVEDAVTVFDGMLVKGYVPNVVTYTVLIRGLCH 356

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
             K     +    M   G  P   T+  L R L +
Sbjct: 357 AGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFE 391


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 137/265 (51%), Gaps = 12/265 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +++G+CK  R++ A  F+ EM  + G  P+  T+N L+NG+C+             +++A
Sbjct: 265 IVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGH----------VKHA 314

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            ++ D M   G +PDV +++ V+    +  + + +++ L+ M  +   P   TY++++  
Sbjct: 315 IEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLIST 374

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC   ++E+A EL   +   G+ P   T+N   +     ++   AM+L+ +M+  G C P
Sbjct: 375 LCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKG-CEP 433

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           +  +YN+LI    +  ++D    +   ++ SG    + +Y  LI G C+  K +EA + F
Sbjct: 434 DEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIF 493

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQS 268
            EM   G+    VT+ TL  GL +S
Sbjct: 494 DEMEVHGVSRNSVTYNTLIDGLCKS 518



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 140/325 (43%), Gaps = 62/325 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI- 60
           Y S+I G CK+  +  A   L +MI R   PN VTYN L++ +C+   +  +    + + 
Sbjct: 333 YNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392

Query: 61  ------------------------RNAEKVFDEMRVRGIEPD------------------ 78
                                   R A ++F+EMR +G EPD                  
Sbjct: 393 SKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLD 452

Query: 79  -----------------VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                            V +++ ++  + +A++ + + +  + M+  G+     TY++++
Sbjct: 453 EALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLI 512

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R+EDA +L+ +M+  G  P   TYN     +    D   A  + + M  +G C
Sbjct: 513 DGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG-C 571

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  LI       R+++  ++   ++  G+     +Y  +I GL  K+K  EA  
Sbjct: 572 EPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAIN 631

Query: 242 YFVEMIEKG-LLPQKVTFETLYRGL 265
            F EM+E+    P  V++  ++RGL
Sbjct: 632 LFREMLEQNEAPPDAVSYRIVFRGL 656



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 143/322 (44%), Gaps = 46/322 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L+ G CK   +  A   +  M++ G +P+V TYN +++G+C+             ++
Sbjct: 298 FNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGE----------VK 347

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V D+M  R   P+  +++ ++    + +Q + + +    +  KGI P V T++S++
Sbjct: 348 EAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLI 407

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC       A EL  EM   G  P   TYN        +   + A+ + +QM+  G C
Sbjct: 408 QGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG-C 466

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++ +YN LI  F   N+     EI+++++  G+  +  +Y  LI GLC+ ++ ++A Q
Sbjct: 467 ARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQ 526

Query: 242 YFVEMIEKGLLPQK-----------------------------------VTFETLYRGLI 266
              +MI +G  P K                                   VT+ TL  GL 
Sbjct: 527 LMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLC 586

Query: 267 QSDMLRTWRRLKKKLDEESITF 288
           ++  +    +L + +  + I  
Sbjct: 587 KAGRVEVASKLLRSIQMKGINL 608



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 130/292 (44%), Gaps = 50/292 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK N+   AE    EM   GV  N VTYN L++G+C+           + + 
Sbjct: 473 YNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK----------SRRVE 522

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++ D+M + G +PD  +++ +L  + R    + + D +  M   G  P + TY +++
Sbjct: 523 DAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLI 582

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+E A +LL  +   G+  +   YN   +    ++    A+ L+R+M E    
Sbjct: 583 SGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEA 642

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  SY I+             R + N     G GP                  +EA  
Sbjct: 643 PPDAVSYRIVF------------RGLCN-----GGGP-----------------IREAVD 668

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL------KKKLDEESIT 287
           + VE++EKG +P+  +   L  GL+   M  T  +L      K +  EE ++
Sbjct: 669 FLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQKARFSEEEVS 720



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 139/289 (48%), Gaps = 10/289 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+++ G+ +   +D A R   +M+E G   + V+ NV+++G C+   +  +  F + + 
Sbjct: 227 FTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMS 286

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N +  F         PD  +F+ +++   +A   + +++ ++ M ++G  P V TY+SV+
Sbjct: 287 NQDGFF---------PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVI 337

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +++A E+L +M+     P+  TYN              A +L R +   G+ 
Sbjct: 338 SGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGI- 396

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ ++N LI          +  E++ +++  G  PD  +Y MLI  LC K K  EA  
Sbjct: 397 LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALN 456

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
              +M   G     +T+ TL  G  +++  R    +  +++   ++  S
Sbjct: 457 MLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNS 505



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 127/306 (41%), Gaps = 47/306 (15%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N + + E    +M   G++P+V T+NVL+  +CR   L P          A  + ++M  
Sbjct: 168 NSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRP----------AILMLEDMPS 217

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSL--------------------------------D 100
            G+ PD  +F+ V+  Y        +L                                D
Sbjct: 218 YGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVED 277

Query: 101 KLNFMKE----KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            LNF++E     G  P   T++++V  LC  G ++ A E++  M++ G  P   TYN   
Sbjct: 278 ALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVI 337

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                  +   A+++  QM     C PN  +YN LI      N+++   E+   +   G+
Sbjct: 338 SGLCKLGEVKEAVEVLDQMITRD-CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGI 396

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD+ ++  LI GLC  +  + A + F EM  KG  P + T+  L   L     L     
Sbjct: 397 LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALN 456

Query: 277 LKKKLD 282
           + K+++
Sbjct: 457 MLKQME 462



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 124/272 (45%), Gaps = 15/272 (5%)

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
           E G++P+   YN +LN +    SL   E     I +A+     M V GI+PDV++F++++
Sbjct: 147 EFGLKPDTHFYNRMLNLLVDGNSLKLVE-----ISHAK-----MSVWGIKPDVSTFNVLI 196

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
               RAHQ + ++  L  M   G+ P   T+++V++     G ++ A  +  +MV  G  
Sbjct: 197 KALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCS 256

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
            S  + N     +        A+   ++M       P+ +++N L+        +    E
Sbjct: 257 WSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIE 316

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           I + +   G  PD+ +Y  +I GLC+  + KEA +   +MI +   P  VT+ TL   L 
Sbjct: 317 IMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLC 376

Query: 267 QSDMLRTWRRLKKKLDEESI-----TFGSEFQ 293
           + + +     L + L  + I     TF S  Q
Sbjct: 377 KENQVEEATELARVLTSKGILPDVCTFNSLIQ 408


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 128/275 (46%), Gaps = 16/275 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+   C+  R   A    GEM ERG EPNV TY VL++ +C+          E  + 
Sbjct: 293 YTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCK----------EGRMD 342

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ +EM  +G+ P V  F+ ++  Y +    + ++  L  M+ K +CP V TY+ ++
Sbjct: 343 EALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELI 402

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    ++ A  LL +MV + + P   TYN            + A +L+R M  DG  
Sbjct: 403 CGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFS 462

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  ++N  +     + R+    +I   +K   +  +  +YT LI G C+  K + A  
Sbjct: 463 -PDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAAS 521

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL-----IQSDML 271
            F  M+ +  LP  +TF  +  GL     +Q  ML
Sbjct: 522 LFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAML 556



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 119/260 (45%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C+   +D A   L +M+E  + P+VVTYN L++G+C              + 
Sbjct: 398 YNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVG----------VVD 447

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F  M   G  PD  +F+  +    R  +   +   L  +KEK +      Y++++
Sbjct: 448 SASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALI 507

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+IE A  L   M+     P++ T+N      R       AM L   M +  + 
Sbjct: 508 DGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDV- 566

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P +H+YNIL+   +     D   EI N +  SG  P++ +YT  I   C + + +EA +
Sbjct: 567 KPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEE 626

Query: 242 YFVEMIEKGLLPQKVTFETL 261
             +++  +G+L     +  L
Sbjct: 627 MVIKIKNEGVLLDSFIYNLL 646



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 137/334 (41%), Gaps = 46/334 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI   CK  R+D A + L EM+E+GV P+VV +N L+   C+R            + 
Sbjct: 328 YTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRG----------MME 377

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  V   M  + + P+V +++ ++  + R      ++  LN M E  + P V TY++++
Sbjct: 378 DAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLI 437

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF---------------------KEYR 160
             LC  G ++ A  L   M+R+G  P   T+N F                      K  +
Sbjct: 438 HGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVK 497

Query: 161 GRKDANGAM--------------KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
             + A  A+               L+++M  +  C+PN  ++N++I       ++     
Sbjct: 498 ANEHAYTALIDGYCKAGKIEHAASLFKRMLAEE-CLPNSITFNVMIDGLRKEGKVQDAML 556

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +  D+    + P L +Y +L+  + ++  +  A +    +I  G  P  VT+    +   
Sbjct: 557 LVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYC 616

Query: 267 QSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
               L     +  K+  E +   S   N     Y
Sbjct: 617 SQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAY 650



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 138/289 (47%), Gaps = 40/289 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+CK  +I+ A      M+     PN +T+NV+++G+          R E  ++
Sbjct: 503 YTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGL----------RKEGKVQ 552

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  + ++M    ++P + +++I++    + +    + + LN +   G  P V TY++ +
Sbjct: 553 DAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFI 612

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  CS GR+E+AEE++ ++   GV   +  YN     Y      + A  + R+M   G C
Sbjct: 613 KAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTG-C 671

Query: 182 VPNMHSYNIL----------------IGMFMALNRMDMVR-EIWNDV------------K 212
            P+  +Y+IL                +G+ ++L  + +   +IW+ +             
Sbjct: 672 EPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMA 731

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
             G  P+L++Y+ LI+GLC+  +   A   +  M E G+ P ++   +L
Sbjct: 732 ECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSL 780



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 123/274 (44%), Gaps = 15/274 (5%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +++  +CK+  + +A  F   ++     P++ TY  L+ G CR             +  A
Sbjct: 194 TMLNSYCKLGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYCR----------NDDVERA 243

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             VF  M  R    +  S++ ++H    A +   +L+    M+E G  PTV TY+ +V  
Sbjct: 244 CGVFCVMPRR----NAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCA 299

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC  GR  +A  L GEM   G  P+  TY             + A+K+  +M E G+  P
Sbjct: 300 LCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGV-AP 358

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++  +N LIG +     M+    +   ++   + P++ +Y  LI G C  +    A    
Sbjct: 359 SVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALL 418

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            +M+E  L P  VT+ TL  GL +  ++ +  RL
Sbjct: 419 NKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRL 452



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 104/255 (40%), Gaps = 30/255 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI  +  +  +D A   L  M   G EP+ +TY++L+  +                
Sbjct: 642 IYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHL---------------- 685

Query: 61  RNAEKVFDEMRVRGIEP---DVTSFSIVLHVYSRAHQPQLSLDKLNF--MKEKGICPTVA 115
                V ++ +  G  P   DV+  +I +       +    +  + F  M E G  P + 
Sbjct: 686 -----VIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLN 740

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           TYS ++  LC  GR+  A  L   M   G+ PS   +N              A+ L   M
Sbjct: 741 TYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSM 800

Query: 176 KEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
            E    + ++ SY +LI G+F  +N+ +    ++  +   G   D  ++ +LI GL  K 
Sbjct: 801 MECSH-LAHLESYKLLICGLFEQMNK-EKAEAVFCSLLRCGYNYDEVAWKVLIDGL-AKT 857

Query: 235 KWKEACQYFVEMIEK 249
            + + C   + ++EK
Sbjct: 858 GYVDQCSELLNLMEK 872



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 5/150 (3%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P + T ++++   C  G +  A      ++R    P   TY      Y    D   A  +
Sbjct: 187 PNLITLNTMLNSYCKLGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGV 246

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
           +  M        N  SY  LI       ++    E W  ++  G  P + +YT+L+  LC
Sbjct: 247 FCVMPRR-----NAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALC 301

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           E  +  EA   F EM E+G  P   T+  L
Sbjct: 302 ESGRELEALSLFGEMRERGCEPNVYTYTVL 331



 Score = 38.9 bits (89), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 63/172 (36%), Gaps = 40/172 (23%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G CK+ R+++A      M E G+ P+ + +N LL+  C+               
Sbjct: 742 YSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLG------------- 788

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F E         VT    ++     AH     L      ++       A + S++
Sbjct: 789 ----MFGEA--------VTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLL 836

Query: 122 KC---------------LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158
           +C               L   G ++   ELL  M +NG     ETY+   +E
Sbjct: 837 RCGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYSMLMQE 888


>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
          Length = 496

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 133/295 (45%), Gaps = 14/295 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI  WC+    + A     EM  RG+  NVV+YN L+ G+CR   L           
Sbjct: 111 YNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLW---------- 160

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+ D MR  G  P + +F++++  Y +A +   +L   N MK  G  P+  TY+ ++
Sbjct: 161 DAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLI 220

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    +  A   L +M   G+ P+  TY      +        A ++   M++ GL 
Sbjct: 221 AGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLE 280

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V + H+Y +L+        M   R+++  +   G+ P    Y M+I+G   +    +A +
Sbjct: 281 V-DAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALK 339

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI-TFGSEFQNY 295
             +EM +KGL+P   ++    R L + D  +    L    D E+I +F    QN+
Sbjct: 340 LIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLD--DMETIRSFAGHHQNF 392



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 128/263 (48%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L++G+    + +       EM   GVEPN+ TYN L+   CR      +  FE+   
Sbjct: 76  YTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCR------TGEFER--- 126

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +FDEM VRGI  +V S++ ++    R  +   +   L+ M+ +G  P++ T++ +V
Sbjct: 127 -ARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLV 185

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G++ +A     +M   G  PSA TYN     +   +D   A +    MKE GL 
Sbjct: 186 DGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGL- 244

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P   +Y ILI  F   N M    EI   ++ +GL  D  +Y +L+  LC +   K+A +
Sbjct: 245 EPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARK 304

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F  M EKG+ P  V ++ +  G
Sbjct: 305 LFQSMGEKGVEPSNVIYDMMIYG 327



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 132/284 (46%), Gaps = 11/284 (3%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T+L+ G CK   +  A R   EM   G+ PN VTY  L++G           + EK    
Sbjct: 42  TALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHG------QREKGF-- 93

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
              +F+EMR  G+EP++ +++ ++  + R  + + +    + M  +GI   V +Y++++ 
Sbjct: 94  --ALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIA 151

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  G++ DA +LL  M   G  PS  T+N     Y      + A+  + QMK  G   
Sbjct: 152 GLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGF-Q 210

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+  +YN+LI  F     M       +D+K  GL P   +YT+LI     +    +A + 
Sbjct: 211 PSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEI 270

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              M + GL     T+  L R L     ++  R+L + + E+ +
Sbjct: 271 LAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGV 314


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI+G C++ R+D       +M E    P V TY V+++     A      R E    
Sbjct: 42  YTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVH-----ALFESGRRME---- 92

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EMR RG EP++ +++++++   +  + +     L+ M EKG+ P+V TY++++
Sbjct: 93  -AINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALI 151

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +E A+E+L  M  N   P+  TYN     +  +K+ + AM L  +M E  L 
Sbjct: 152 DGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRL- 210

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN LI     +  +D    + N +  +G+ PD  +Y++ I  LC+K + +EA  
Sbjct: 211 TPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANV 270

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
            F  + EKG+   +V +  L  G  ++  +     L  ++  E     S   N
Sbjct: 271 LFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYN 323



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 120/259 (46%), Gaps = 15/259 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C+   +  A   L +M+E  + P+VVTYN L++G C+   L  + R      
Sbjct: 182 YNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYR------ 235

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + + M   G+ PD  ++S+ +    +  + + +    N +KEKGI      Y++++
Sbjct: 236 ----LLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALI 291

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
              C  G+++DA  LL  M+     P++ TYN         +    A+ L   M + GL 
Sbjct: 292 DGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLK 351

Query: 181 -CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
             VP   +Y ILI   +     D    I + +  SG  PD+  YT  IH  C +   KEA
Sbjct: 352 CTVP---TYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEA 408

Query: 240 CQYFVEMIEKGLLPQKVTF 258
                 M E+G++P  +T+
Sbjct: 409 EDMMSMMFERGVMPDALTY 427



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 40/290 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+LI G+CK  ++D A   L  M+     PN  TYN L++G+C+          E+ +
Sbjct: 286 IYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCK----------ERKV 335

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  + + M  +G++  V +++I++    +      +   L+ M   G  P V  Y++ 
Sbjct: 336 QEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAF 395

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C+ G I++AE+++  M   GV P A TY      Y G    N A  + ++M + G 
Sbjct: 396 IHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTG- 454

Query: 181 CVPNMHSYNILI----------------------GMFMA-------LNRMDMVREIWNDV 211
           C P+ H+Y+ LI                       +F A       + + +   E++  +
Sbjct: 455 CDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKM 514

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
              G  P++++Y  LI GLC+  +   A + F  M E+G+ P +  + +L
Sbjct: 515 LEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSL 564



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 129/291 (44%), Gaps = 20/291 (6%)

Query: 5   LIYGWCKI---------NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER 55
           ++ G+CK+         N ++ A      M ++G   N V+Y  L++G+C         R
Sbjct: 1   MVNGYCKLGNLVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVG------R 54

Query: 56  FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA 115
            ++ I     +F +MR     P V ++++++H    + +   +++  + M+E+G  P + 
Sbjct: 55  VDEGI----NIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIH 110

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           TY+ ++  +C   ++E+   +L EMV  G+ PS  TYN     Y        A ++   M
Sbjct: 111 TYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLM 170

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
             +  C PN  +YN LI  F     +     + + +  S L P + +Y  LIHG C+   
Sbjct: 171 HSNS-CNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGY 229

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              A +    M E G++P + T+      L +   +     L   L E+ I
Sbjct: 230 LDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGI 280



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 89/195 (45%), Gaps = 8/195 (4%)

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
            N M +KG      +Y++++  LC  GR+++   +  +M  +   P+  TY         
Sbjct: 27  FNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFE 86

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
                 A+ L+ +M+E G C PN+H+Y ++I       +++  R I +++   GL P + 
Sbjct: 87  SGRRMEAINLFSEMRERG-CEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVP 145

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLL-PQKVTFETLYRGL-----IQSDMLRTWR 275
           +Y  LI G C K+   EA Q  ++++      P + T+  L  G      +   M    +
Sbjct: 146 TYNALIDGYC-KEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSK 204

Query: 276 RLKKKLDEESITFGS 290
            L+ +L    +T+ S
Sbjct: 205 MLESRLTPSVVTYNS 219



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 111/284 (39%), Gaps = 55/284 (19%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS------- 53
           +YT+ I+ +C    I  AE  +  M ERGV P+ +TY ++++       L+P+       
Sbjct: 391 IYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRM 450

Query: 54  ---------------------ERFEKTIRN--------------------------AEKV 66
                                E   K  +N                          A ++
Sbjct: 451 FDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALEL 510

Query: 67  FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS 126
           F++M   G  P++ +++ ++    +  +  ++    + M E+G+ P+ A Y+S++ C C 
Sbjct: 511 FEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCE 570

Query: 127 CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH 186
            G   DA  L+G M+ +G  P  E+ N  F           A  ++  + + G     + 
Sbjct: 571 LGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEV- 629

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           ++ ILI   +     D   E+   ++  G      +Y MLI GL
Sbjct: 630 AWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRMLIEGL 673


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 140/284 (49%), Gaps = 11/284 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT L+ G CK+ R+  AE  LGEM+ +GV PNVVTYN L+ G+C+        RF+    
Sbjct: 199 YTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEG------RFD---- 248

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  K+ ++M ++   PD  +++ V+H   +  +       L+    KG+   V TY++++
Sbjct: 249 DVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALI 308

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G ++ A ++L  M RN V P  +T+N     +      + AM    QM   GL 
Sbjct: 309 NGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGL- 367

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  ++N LI    ++    +   + + ++  G+ PD  +Y + I  LC++ + +EA  
Sbjct: 368 SPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHS 427

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
            F  +  KG+    V + +L  G  Q   + +   L +K+  E+
Sbjct: 428 LFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASEN 471



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 119/276 (43%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G C   RID A R   +M      P V TY VLL+G+C+           + + 
Sbjct: 164 YTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKV----------RRVG 213

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE +  EM  +G+ P+V +++ ++    +  +       L  M+ +   P   TY+ VV
Sbjct: 214 EAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVV 273

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++    ++L E +  GV     TYN     Y    D   A+ + + MK + + 
Sbjct: 274 HGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRV- 332

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + ++N +I  F    ++         + G+GL P+  ++  LI G C   + K A +
Sbjct: 333 NPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALR 392

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
               M E G+LP + T+      L     L     L
Sbjct: 393 LLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSL 428



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 108/244 (44%), Gaps = 12/244 (4%)

Query: 22  LGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81
            G M++ G  PN  TYN L+N  C+ A L  +      +R A          G+ PD  +
Sbjct: 78  FGAMLKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREA----------GLAPDTFT 127

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEK-GICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           ++ ++    RA     +      M  + G C    +Y+ ++K LC+ GRI+DA  +  +M
Sbjct: 128 YNCLMLGLCRAGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKM 187

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
            R    P   TY          +    A  L  +M   G+ VPN+ +YN LIG      R
Sbjct: 188 SRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGV-VPNVVTYNALIGGLCQEGR 246

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
            D V ++   ++     PD  +YT ++HGLC+  K     +   E I KG+  + +T+  
Sbjct: 247 FDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNA 306

Query: 261 LYRG 264
           L  G
Sbjct: 307 LING 310



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 122/270 (45%), Gaps = 13/270 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + SLI G C +    +A R L  M E GV P+  TY + ++ +C           E  + 
Sbjct: 374 FNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCD----------EGQLE 423

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F  + ++GI+     ++ ++H Y +      +   +  M  +   P V TY++++
Sbjct: 424 EAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLI 483

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R++ A +LL +M + G+ P+  T+N   K+    K    A K+Y QM   G C
Sbjct: 484 DGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSG-C 542

Query: 182 VPNMHSYNILIGM--FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            P+  +Y + I    F    + + +     ++  +G+ PD+++Y  +I    +    ++A
Sbjct: 543 KPDKQTYTLKISTDWFEGATKEENIDMAVVEMHEAGVFPDVETYNAIIKAYVDAGLKEKA 602

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
               V+M+   + P   T+  L   +   D
Sbjct: 603 FFAHVKMLSVPIDPDCTTYSILLNYMCNKD 632



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 121/289 (41%), Gaps = 27/289 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-------- 53
           Y +LI   CK+  +  A   L  M E G+ P+  TYN L+ G+CR   L  +        
Sbjct: 93  YNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCRAGLLAAACGLFVQMP 152

Query: 54  -------ERFEKT-----------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                  +R+  T           I +A +VF +M      P V +++++L    +  + 
Sbjct: 153 RRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRV 212

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +   L  M  KG+ P V TY++++  LC  GR +D  +LL +M      P   TY   
Sbjct: 213 GEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQV 272

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                         K+  +    G+ +  + +YN LI  +     M    ++   +K + 
Sbjct: 273 VHGLCKHGKVGHGAKVLHEAIGKGVALEVL-TYNALINGYCKGGDMKAALDVLQLMKRNR 331

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           + P + ++  +IHG C   K  +A  +  +M   GL P  VTF +L  G
Sbjct: 332 VNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISG 380



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 132/320 (41%), Gaps = 64/320 (20%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTSL++G+C++  ID A   + +M      P+V TYN L++G+C+       +R ++ I
Sbjct: 443 IYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCK------VKRLDRAI 496

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLH--VYSRAHQPQLSL-----------DKLNF--- 104
                + D+M+ +GIEP   +F+I++   ++ + H     +           DK  +   
Sbjct: 497 ----DLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLK 552

Query: 105 ---------------------MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
                                M E G+ P V TY++++K     G  E A     +M+  
Sbjct: 553 ISTDWFEGATKEENIDMAVVEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSV 612

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAM---------------KLYRQMKEDGLCVPNMHSY 188
            + P   TY+     Y   KD + A                +L+ QM E     P + +Y
Sbjct: 613 PIDPDCTTYSILLN-YMCNKDDSDAFDNEKIWKMVDVRNLQELFEQMCESD-AAPGISTY 670

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
             L+       R++ V  +   ++G+ +  D D    L+   C  + ++EAC+ F  M  
Sbjct: 671 KALLRGLCNQCRLEEVEWLLLKMQGNSILLDEDMSDYLLGCYCNLEMYREACEQFRSMAH 730

Query: 249 KGLLPQKVTFETLYRGLIQS 268
           +   P   +   L  GL  S
Sbjct: 731 QSFQPGLKSCCLLLSGLCDS 750



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 92/209 (44%), Gaps = 4/209 (1%)

Query: 78  DVTSFSIVLHVYSR--AHQPQLS--LDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           DV S +  L  YS   +  P+L+  L     M + G  P   TY++++   C    + DA
Sbjct: 50  DVRSHNAALIAYSSRGSRAPRLAHLLASFGAMLKSGAPPNRCTYNTLINAHCKLALLADA 109

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
              L  M   G+ P   TYNC             A  L+ QM        + +SY ILI 
Sbjct: 110 RAALVRMREAGLAPDTFTYNCLMLGLCRAGLLAAACGLFVQMPRRWGACYDRYSYTILIK 169

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
              A  R+D    ++  +      P + +YT+L+ GLC+ ++  EA     EM+ KG++P
Sbjct: 170 GLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVP 229

Query: 254 QKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
             VT+  L  GL Q        +L +K++
Sbjct: 230 NVVTYNALIGGLCQEGRFDDVTKLLEKME 258


>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
 gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
          Length = 467

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 133/295 (45%), Gaps = 14/295 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI  WC+    + A     EM  RG+  NVV+YN L+ G+CR   L           
Sbjct: 111 YNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLW---------- 160

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+ D MR  G  P + +F++++  Y +A +   +L   N MK  G  P+  TY+ ++
Sbjct: 161 DAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLI 220

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    +  A   L +M   G+ P+  TY      +        A ++   M++ GL 
Sbjct: 221 AGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLE 280

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V + H+Y +L+        M   R+++  +   G+ P    Y M+I+G   +    +A +
Sbjct: 281 V-DAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALK 339

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI-TFGSEFQNY 295
             +EM +KGL+P   ++    R L + D  +    L    D E+I +F    QN+
Sbjct: 340 LIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLD--DMETIRSFAGHHQNF 392



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 128/263 (48%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L++G+    + +       EM   GVEPN+ TYN L+   CR      +  FE+   
Sbjct: 76  YTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCR------TGEFER--- 126

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +FDEM VRGI  +V S++ ++    R  +   +   L+ M+ +G  P++ T++ +V
Sbjct: 127 -ARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLV 185

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G++ +A     +M   G  PSA TYN     +   +D   A +    MKE GL 
Sbjct: 186 DGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGL- 244

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P   +Y ILI  F   N M    EI   ++ +GL  D  +Y +L+  LC +   K+A +
Sbjct: 245 EPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARK 304

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F  M EKG+ P  V ++ +  G
Sbjct: 305 LFQSMGEKGVEPSNVIYDMMIYG 327



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 132/284 (46%), Gaps = 11/284 (3%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T+L+ G CK   +  A R   EM   G+ PN VTY  L++G           + EK    
Sbjct: 42  TALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHG------QREKGF-- 93

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
              +F+EMR  G+EP++ +++ ++  + R  + + +    + M  +GI   V +Y++++ 
Sbjct: 94  --ALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIA 151

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  G++ DA +LL  M   G  PS  T+N     Y      + A+  + QMK  G   
Sbjct: 152 GLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGF-Q 210

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+  +YN+LI  F     M       +D+K  GL P   +YT+LI     +    +A + 
Sbjct: 211 PSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEI 270

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              M + GL     T+  L R L     ++  R+L + + E+ +
Sbjct: 271 LAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGV 314


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 130/285 (45%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI    +  RI  A   L  M   G  PN+VTYN ++ G C               +
Sbjct: 393 YNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC----------ILGDPK 442

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V + M  RG   ++ +++ ++  Y  +     +L  L+ M++ G  P   +Y+ ++
Sbjct: 443 KAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI 502

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   ++E A  L  EMV +G+CP+  TY      Y   +  + A  L   MK  G C
Sbjct: 503 CGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSG-C 561

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN+LI      N      E+   +   G+ P++ +YT +I GLC+      A +
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F +MIE+G LP  +T+ +L R L Q   +     L  +L+   +
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGL 666



 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 139/301 (46%), Gaps = 26/301 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC------------RRAS 49
           YTS+I G C+ + +D A +   +M + G EPN VTY+ L+NG+C            R   
Sbjct: 253 YTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI 312

Query: 50  LHPSERFEKTI-------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           LH       T               +A ++F +M+ +G EP+V +++ ++     +   +
Sbjct: 313 LHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLK 372

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           +++   + M   G+ P   TY++++  L    RI+ A  +L  M RNG  P+  TYN   
Sbjct: 373 VAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMI 432

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           K Y    D   AM +   M + G    N+ +YN +I  +           I + ++  G 
Sbjct: 433 KGYCILGDPKKAMLVMNNMLQRGHSA-NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC 491

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD  SYT LI G C+  K + A   F EM++ GL P +VT+  L  G  + + L T   
Sbjct: 492 KPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATS 551

Query: 277 L 277
           L
Sbjct: 552 L 552



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 132/267 (49%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G+C +     A   +  M++RG   N+VTYN ++ G C   +            
Sbjct: 428 YNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGN----------TT 477

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++ D MR  G +PD  S++ ++  + +  + + +    N M + G+CP   TY++++
Sbjct: 478 SALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALI 537

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   +++ A  LL  M R+G  P+ +TYN        + + +GA +L + M E+G+ 
Sbjct: 538 DGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGI- 596

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  +I          +  E++N +   G  P+L +Y+ LI  L ++ K +EA  
Sbjct: 597 FPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAEN 656

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F E+   GL+P ++T+  +    I S
Sbjct: 657 LFAELERHGLIPDEITYVKMIEAYIMS 683



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 116/240 (48%), Gaps = 11/240 (4%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M+  GV+PN++ YN ++N +C+  ++  +E   K +  +E          + PD  +++ 
Sbjct: 206 MLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESE----------MSPDTFTYTS 255

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           ++  + R H    +L   N M ++G  P   TYS+++  LC  GR+ +A +L+ EM+ +G
Sbjct: 256 MILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG 315

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           + P+A T                A +L+  MK  G C PN+++Y  LI        + + 
Sbjct: 316 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKG-CEPNVYTYTALISGLCVSGLLKVA 374

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             +++ +   G+ P+  +Y  LI+ L E ++ K A      M   G  P  VT+  + +G
Sbjct: 375 IGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKG 434



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 121/268 (45%), Gaps = 11/268 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I   CK   +  AE  + ++ E  + P+  TY  ++ G CR+  L          
Sbjct: 217 IYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD--------- 267

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A +VF++M   G EP+  ++S +++    + +   + D +  M   GI PT  T +  
Sbjct: 268 -SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGP 326

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G  EDA  L  +M   G  P+  TY               A+ L+ +M  DG+
Sbjct: 327 IIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGV 386

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  +YN LI + +   R+     + N +  +G  P++ +Y  +I G C     K+A 
Sbjct: 387 -FPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAM 445

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
                M+++G     VT+ T+ +G   S
Sbjct: 446 LVMNNMLQRGHSANLVTYNTIIKGYCDS 473



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 135/360 (37%), Gaps = 105/360 (29%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+CK  ++D A   L  M   G  PNV TYNVL++G+ +          +    
Sbjct: 533 YTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTK----------QNNFS 582

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE++   M   GI P+V +++ ++    +     L+L+  N M E+G  P + TYSS++
Sbjct: 583 GAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLI 642

Query: 122 KCLCSCGRIEDAEEL-----------------------------------LGEMVRNGVC 146
           + L   G++E+AE L                                   LG M++ G  
Sbjct: 643 RALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQ 702

Query: 147 PSAETY--------------------------NCFFKEYRGRKDANGAM----------- 169
           P+  TY                          NC F      +DA   M           
Sbjct: 703 PTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGL 762

Query: 170 ----------------------KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
                                 +L   M   GLC P+  +YN L+   + +  +D+   +
Sbjct: 763 SVQVQNALVSNLSTAGRWFEANELLGSMISQGLC-PDQEAYNSLLCSLLRVRNVDLAMGV 821

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           +  +   G    L+ Y  LI  LC+  + KEA   F  M+ +   P  V    L  GL++
Sbjct: 822 FKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLR 881



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 113/238 (47%), Gaps = 5/238 (2%)

Query: 49  SLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK 108
           S H  E   +T+       D +   G+   + ++S +L   SR       +D+ + M  +
Sbjct: 154 SCHSKEAMARTM----SFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE 209

Query: 109 GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGA 168
           G+ P +  Y++V+  LC  G + DAE ++ ++  + + P   TY      +  + D + A
Sbjct: 210 GVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSA 269

Query: 169 MKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228
           ++++ QM ++G C PN  +Y+ LI       R++   ++  ++   G+ P   + T  I 
Sbjct: 270 LQVFNQMAKEG-CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPII 328

Query: 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            LC+   +++A + FV+M  KG  P   T+  L  GL  S +L+    L  ++  + +
Sbjct: 329 ALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGV 386



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 124/281 (44%), Gaps = 35/281 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I  +    +++ A  FLG MI+ G +P + TY VL+ G+                 
Sbjct: 673 YVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL----------------- 715

Query: 62  NAEKVFDEMRVRGIEPDVT---SFSIVLHVYSRAHQPQLSLDKLNFMK-EKGICPTVATY 117
             E +  + R+  + PDV    SF      Y    Q  +S+      + + G+  +V   
Sbjct: 716 KNEYLLADQRLAAL-PDVVPNCSFG-----YQTTDQDAVSVMSAKLAELDPGL--SVQVQ 767

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           +++V  L + GR  +A ELLG M+  G+CP  E YN         ++ + AM +++ M  
Sbjct: 768 NALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMST 827

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G C  +++ Y  LI     L+R    R  + ++      PD     +LI GL  +  +K
Sbjct: 828 QG-CEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLL-RDGYK 885

Query: 238 EACQYFVEMIE-KGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           + C  F+ ++E +  +P    +  L R   ++   R+W+ +
Sbjct: 886 DLCMEFLHIMETRRYMPSFHIYTILAR---EASKKRSWKHV 923


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 137/264 (51%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I   C+   ID A     EM  +G++ +VVTYN L+ G+C+    +          
Sbjct: 231 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWN---------- 280

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +   +  +M  R I P+V +F+++L V+ +  + Q + +    M  +GI P + TY++++
Sbjct: 281 DGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLM 340

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R+ +A  +L  MVRN   P   T+    K Y   K  +  MK++R + + GL 
Sbjct: 341 DGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGL- 399

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V N  +Y+IL+  F    ++ +  E++ ++   G+ PD+ +Y +L+ GLC+  K ++A +
Sbjct: 400 VANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALE 459

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F ++ +  +    V + T+  G+
Sbjct: 460 IFEDLQKSKMDLGIVMYTTIIEGM 483



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 141/288 (48%), Gaps = 15/288 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G     ++  A   +  M+E G +P+VVTYN ++NG+CR               
Sbjct: 161 FNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSL--------- 211

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +M  R ++ DV ++S ++    R      ++     M+ KGI  +V TY+S+V
Sbjct: 212 -ALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLV 270

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  G+  D   LL +MV   + P+  T+N     +        A +LY++M   G+ 
Sbjct: 271 RGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGIS 330

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN L+  +   NR+     + + +  +   PD+ ++T LI G C  ++  +  +
Sbjct: 331 -PNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMK 389

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
            F  + ++GL+   VT+  L +G  QS  +    +L ++L +E ++ G
Sbjct: 390 VFRNISKRGLVANAVTYSILVQGFCQSGKI----KLAEELFQEMVSHG 433



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 145/283 (51%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+ G CK  + +     L +M+ R + PNV+T+NVLL+   +          E  ++
Sbjct: 266 YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK----------EGKLQ 315

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +++ EM  RGI P++ +++ ++  Y   ++   + + L+ M      P + T++S++
Sbjct: 316 EANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLI 375

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R++D  ++   + + G+  +A TY+   + +        A +L+++M   G+ 
Sbjct: 376 KGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV- 434

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y IL+       +++   EI+ D++ S +   +  YT +I G+C+  K ++A  
Sbjct: 435 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWN 494

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KG+ P  +T+  +  GL +   L     L +K++E+
Sbjct: 495 LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEED 537



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 145/297 (48%), Gaps = 18/297 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +I  +C+  +   A   LG++++ G EP+  T+N L+ G+            E  +  A 
Sbjct: 129 MINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGL----------FLEGKVSEAV 178

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            + D M   G +PDV +++ +++   R+    L+LD L  M+E+ +   V TYS+++  L
Sbjct: 179 VLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSL 238

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMKEDGLCVP 183
           C  G I+ A  L  EM   G+  S  TYN   +   +  K  +GA+ L   +  +   VP
Sbjct: 239 CRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE--IVP 296

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N+ ++N+L+ +F+   ++    E++ ++   G+ P++ +Y  L+ G C + +  EA    
Sbjct: 297 NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 356

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLKKK-LDEESITFGSEFQNY 295
             M+     P  VTF +L +G        D ++ +R + K+ L   ++T+    Q +
Sbjct: 357 DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGF 413



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 126/279 (45%), Gaps = 17/279 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+  + K  ++  A     EMI RG+ PN++TYN L++G C           +  + 
Sbjct: 301 FNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYC----------MQNRLS 350

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D M      PD+ +F+ ++  Y    +    +     + ++G+     TYS +V
Sbjct: 351 EANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILV 410

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G+I+ AEEL  EMV +GV P   TY               A++++  +++  + 
Sbjct: 411 QGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 470

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWN---DVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           +  +    I+ GM     +   V + WN    +   G+ P++ +YT++I GLC+K    E
Sbjct: 471 LGIVMYTTIIEGMC----KGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE 526

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A     +M E G  P   T+ TL R  ++   L    +L
Sbjct: 527 ANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKL 565



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 132/279 (47%), Gaps = 21/279 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ G+C+  +I +AE    EM+  GV P+V+TY +LL+G+C    L           
Sbjct: 406 YSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEK--------- 456

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F++++   ++  +  ++ ++    +  + + + +    +  KG+ P V TY+ ++
Sbjct: 457 -ALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMI 515

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G + +A  LL +M  +G  P+  TYN   + +    D   + KL  +MK  G  
Sbjct: 516 SGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFS 575

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  S  ++I M ++  +   +R   +  KGS    DL         L   +K + +  
Sbjct: 576 -ADASSIKMVIDMLLSAMKRLTLRYCLS--KGSKSRQDL-------LELSGSEKIRLSSL 625

Query: 242 YFVEMIEKGLLPQKVTFETL-YRGLIQSDMLRTWRRLKK 279
            FV+M     +   +   T+  RG+  +++ R  R+L++
Sbjct: 626 TFVKMFPCNTITTSLNVNTIEARGMNSAELNRDLRKLRR 664



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 122/272 (44%), Gaps = 11/272 (4%)

Query: 16  DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI 75
           D A     EMI     P++V ++   + + R    +    F K          ++ + GI
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCK----------QLELNGI 119

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
             ++ + +I+++ + R  +   +   L  + + G  P   T+++++K L   G++ +A  
Sbjct: 120 AHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVV 179

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           L+  MV NG  P   TYN          D + A+ L R+M+E  +   ++ +Y+ +I   
Sbjct: 180 LVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNV-KADVFTYSTIIDSL 238

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
                +D    ++ +++  G+   + +Y  L+ GLC+  KW +      +M+ + ++P  
Sbjct: 239 CRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNV 298

Query: 256 VTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +TF  L    ++   L+    L K++    I+
Sbjct: 299 ITFNVLLDVFVKEGKLQEANELYKEMITRGIS 330



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 10/126 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT++I G CK  +++ A      +  +GV+PNV+TY V+++G+C++ SL          
Sbjct: 475 MYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE-------- 526

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +  +M   G  P+  +++ ++  + R      S   +  MK  G     ++   V
Sbjct: 527 --ANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMV 584

Query: 121 VKCLCS 126
           +  L S
Sbjct: 585 IDMLLS 590


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 142/310 (45%), Gaps = 30/310 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKT 59
           MYT++I G+CK  ++D A   L EM ERGV+ +V+ ++ L+ G+CR+  +  + E+F+  
Sbjct: 113 MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 172

Query: 60  -----------------------IRNAEKVFDEMRVR-----GIEPDVTSFSIVLHVYSR 91
                                  I  A ++FD+M  R     G EPDV S+S V+    +
Sbjct: 173 GEECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCK 232

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
           A +   + +    M+  G  P V TYSS++  LC   R  +  ELL  M   G   +   
Sbjct: 233 AQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIID 292

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           +N          +   A + + ++ + G   PN+ +YN+ +       R+D    I  ++
Sbjct: 293 FNAMLHALWKNDEQEKACQFFERLLKSGK-KPNVVTYNVAVHGLCKAGRVDEAYRILLEM 351

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
             S + PD+ +Y+ +I G C+  +  +A   F  M+    +P  VTF TL  G  +    
Sbjct: 352 VESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKS 411

Query: 272 RTWRRLKKKL 281
           R   R+ + +
Sbjct: 412 REAFRVHEDM 421



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 137/288 (47%), Gaps = 17/288 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+  + K  R + A R L E +E    PN + Y  ++NG C+             +  A 
Sbjct: 82  LLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQ----------VDQAF 131

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           ++ DEM+ RG++ DV   S ++    R  +   +L++   M E+   P V TY++VV  L
Sbjct: 132 ELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEE-CSPNVITYNTVVNGL 190

Query: 125 CSCGRIEDAEELLGEM-----VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           C   RI++A EL  +M       +G  P   +Y+         +  + A + +++M+  G
Sbjct: 191 CKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVG 250

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C PN+ +Y+ LI     ++R     E+   +K  G G ++  +  ++H L +  + ++A
Sbjct: 251 -CAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKA 309

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           CQ+F  +++ G  P  VT+     GL ++  +    R+  ++ E  +T
Sbjct: 310 CQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVT 357



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 128/291 (43%), Gaps = 30/291 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I   CK  R+D A  +   M   G  PNVVTY+ L++G+C+     PSE  E  + 
Sbjct: 223 YSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVD--RPSECLELLLH 280

Query: 62  NAEK---------------------------VFDEMRVRGIEPDVTSFSIVLHVYSRAHQ 94
             EK                            F+ +   G +P+V ++++ +H   +A +
Sbjct: 281 MKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGR 340

Query: 95  PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
              +   L  M E  + P V TYSS++   C  GR++ A+++   M+ +   P   T+  
Sbjct: 341 VDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMT 400

Query: 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
               +   K +  A +++  M   G  +P + +YN+L+      + ++   EI++ +K  
Sbjct: 401 LLHGFSEHKKSREAFRVHEDMVNAGF-IPGLQTYNVLMDCVCGADSVESALEIYHKMKRK 459

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
              PD ++Y  LI  LC  ++  EA ++   M    ++P       L   L
Sbjct: 460 KRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVL 510



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 135/297 (45%), Gaps = 29/297 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           Y   ++G CK  R+D A R L EM+E  V P+V+TY+ +++G C+   +           
Sbjct: 328 YNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMM 387

Query: 51  ------HPSERF--------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                 HP             K  R A +V ++M   G  P + ++++++     A   +
Sbjct: 388 VHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVE 447

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+  + MK K   P   TY+ +++CLC   R+++A+E L  M  + V P+    +   
Sbjct: 448 SALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALV 507

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           +    + + + A  +   + E G C P   ++ IL+       + +   ++   ++  G 
Sbjct: 508 EVLCKQGEVDEACSVLDNVVEVG-CQPLGETFKILVEELYLRKKWEAASKL---LRSPGF 563

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT 273
             D  +Y++ +  +C+  K  EA +   +M+ KG+ P + T+  + R L   D + +
Sbjct: 564 VADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVES 620



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 124/269 (46%), Gaps = 14/269 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L++G+ +  +   A R   +M+  G  P + TYNVL++ VC   S          + 
Sbjct: 398 FMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADS----------VE 447

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A +++ +M+ +  +PD  +++ ++    RA +   + + L+ M+   + P  A   ++V
Sbjct: 448 SALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALV 507

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  G +++A  +L  +V  G  P  ET+    +E   RK    A KL R     G  
Sbjct: 508 EVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLLRS---PGF- 563

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V +  +Y++ +       + D   E+   +   G+ PD  +Y  ++  LC   + + A  
Sbjct: 564 VADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIA 623

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
            F +M  +G  P  VT+  L      +DM
Sbjct: 624 EFEKMASRGCAPGLVTYTLLIGEACSADM 652



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 23/212 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-------- 53
           Y  LI   C+  R+D A+ FL  M    V PN    + L+  +C++  +  +        
Sbjct: 468 YAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVV 527

Query: 54  --------ERFEKTI------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
                   E F+  +      +  E     +R  G   D  ++S+ +    +A +P  ++
Sbjct: 528 EVGCQPLGETFKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAV 587

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           + +  M  KG+ P   TY +V++ LC   R+E A     +M   G  P   TY     E 
Sbjct: 588 EVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEA 647

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNIL 191
                A+ A +++  M   G   P   +   L
Sbjct: 648 CSADMADEAFRIFEAMVAAGF-TPQAQTMRTL 678


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 127/266 (47%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I  +CK  R   A      M++ G +PN   YN L+NG CR +           I 
Sbjct: 442 YSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSK----------IN 491

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K++ EM   G  P + +++ ++    +A + Q +      M E+G  P + TY+S++
Sbjct: 492 DAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLI 551

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC   +++ A  +  E++  G+      +N            + A  +Y +MKE   C
Sbjct: 552 RGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKN-C 610

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN L+  F  +  +D    +W  +  +GL PD+ +Y   I GLC   +  E   
Sbjct: 611 SPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVL 670

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
              E++  G++P  +T+  L R +I+
Sbjct: 671 LLNEVLATGIMPTVITWSILVRAVIK 696



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 131/278 (47%), Gaps = 17/278 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI+G C+   +D A R   +M++ G+  +V  YN L+ G C       + +F     
Sbjct: 302 YGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKF----- 356

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSV 120
                +D     GI   +T+++I+      +     + + L  ++    C P   T+ ++
Sbjct: 357 -----WDSTGFSGIR-QITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTL 410

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G    A E+L +   +G      +Y+     +      + A ++Y+ M +DG 
Sbjct: 411 IHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDG- 469

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN H YN LI  F  +++++   +I+ ++  +G  P + +Y  LI GLC+ +K++EA 
Sbjct: 470 CKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEAS 529

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSD----MLRTW 274
               EM+E+G  P   T+ +L RGL +       LR W
Sbjct: 530 SLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIW 567



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 130/293 (44%), Gaps = 28/293 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SLI G+C++ R   A +F       G+   + TYN++  G+     +  +    K +
Sbjct: 336 VYNSLIKGFCEVGRTGEAWKFWDSTGFSGIR-QITTYNIMTKGLLDSGMVSEATELLKQL 394

Query: 61  RN--------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ 94
            N                          A ++ ++ R  G E DV S+S +++ + +  +
Sbjct: 395 ENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGR 454

Query: 95  PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
              + +    M + G  P    Y++++   C   +I DA ++  EM  NG CP+  TYN 
Sbjct: 455 THDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNT 514

Query: 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
                   +    A  L ++M E G   P++ +Y  LI       ++D+   IW+++  +
Sbjct: 515 LIDGLCKAEKYQEASSLTKEMLERGF-KPDIRTYASLIRGLCRDKKVDVALRIWDEILDA 573

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           GL  D+  + +LIHGLC   K  EA   ++EM EK   P  VT+ TL  G  +
Sbjct: 574 GLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYE 626



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 121/230 (52%), Gaps = 11/230 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+C++++I+ A +   EM   G  P ++TYN L++G+C+      +E++++  
Sbjct: 476 VYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCK------AEKYQE-- 527

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +  EM  RG +PD+ +++ ++    R  +  ++L   + + + G+   V  ++ +
Sbjct: 528 --ASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNIL 585

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LCS G++++A  +  EM      P+  TYN     +      + A  L+  + ++GL
Sbjct: 586 IHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGL 645

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
             P++ +YN  I    + NR      + N+V  +G+ P + ++++L+  +
Sbjct: 646 -KPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAV 694



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 118/269 (43%), Gaps = 14/269 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++   C    +D A      +  RGV P+ VTY+ L++G+ +   L           
Sbjct: 161 YNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLD---------- 210

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKL-NFMKEKGICPTVATYSSV 120
           NA  + DEM   G++ D   ++ +L    R    + ++      +++ G  P +ATY  +
Sbjct: 211 NALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVM 270

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  GR ++A E+   M+ N       TY           D + A ++Y  M + GL
Sbjct: 271 LDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGL 330

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            V ++  YN LI  F  + R     + W+    SG+   + +Y ++  GL +     EA 
Sbjct: 331 -VLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGI-RQITTYNIMTKGLLDSGMVSEAT 388

Query: 241 QYFVEM-IEKGLLPQKVTFETLYRGLIQS 268
           +   ++  +    P KVTF TL  GL ++
Sbjct: 389 ELLKQLENDASCSPDKVTFGTLIHGLCEN 417



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 109/239 (45%), Gaps = 6/239 (2%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G  P V ++N LL+   R      ++ F  ++ +    F     R I P++ +++I+L  
Sbjct: 114 GCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHG--AFG----RRIAPNLQTYNIILRS 167

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
                    ++   + ++ +G+ P   TYS+++  L    ++++A +LL EM   GV   
Sbjct: 168 LCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQAD 227

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
           A  YN              AMK++ Q+  D    PN+ +Y +++     L R     E+W
Sbjct: 228 AVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVW 287

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           + +  +    D  +Y +LIHGLC       A + + +M++ GL+     + +L +G  +
Sbjct: 288 SRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCE 346



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 137/330 (41%), Gaps = 49/330 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMI-ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y +L+ G  +    + A +   +++ + G  PN+ TY V+L+G+C+        RF++  
Sbjct: 231 YNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLG------RFKE-- 282

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A +V+  M     + D  ++ I++H   R+     +    + M + G+   V+ Y+S+
Sbjct: 283 --AGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSL 340

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +K  C  GR  +A +       +G+     TYN   K        + A +L +Q++ D  
Sbjct: 341 IKGFCEVGRTGEAWKFWDSTGFSGI-RQITTYNIMTKGLLDSGMVSEATELLKQLENDAS 399

Query: 181 CVPN-----------------------------------MHSYNILIGMFMALNRMDMVR 205
           C P+                                   + SY+ +I  F    R     
Sbjct: 400 CSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDAN 459

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           E++ ++   G  P+   Y  LI+G C   K  +A + ++EM   G  P  +T+ TL  GL
Sbjct: 460 EVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGL 519

Query: 266 IQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
            +++  +    L K++ E    F  + + Y
Sbjct: 520 CKAEKYQEASSLTKEMLERG--FKPDIRTY 547



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 137/309 (44%), Gaps = 41/309 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEM----IERGVEPNVVTYNVLLNGVCRRASLHPSERFE 57
           + +L+  + +  R   A+ F   +      R + PN+ TYN++L  +C R          
Sbjct: 122 HNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTYNIILRSLCARGD-------- 173

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
             +  A  +F  +R RG+ PD  ++S ++   ++  Q   +LD L+ M   G+      Y
Sbjct: 174 --VDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCY 231

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRN-GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           ++++      G  E A ++  ++VR+ G  P+  TY             +G  KL R  K
Sbjct: 232 NALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVML---------DGLCKLGR-FK 281

Query: 177 EDGLC----VPNMH-----SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           E G      + N H     +Y ILI        +D    +++D+  +GL  D+  Y  LI
Sbjct: 282 EAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLI 341

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES-- 285
            G CE  +  EA +++      G + Q  T+  + +GL+ S M+     L K+L+ ++  
Sbjct: 342 KGFCEVGRTGEAWKFWDSTGFSG-IRQITTYNIMTKGLLDSGMVSEATELLKQLENDASC 400

Query: 286 ----ITFGS 290
               +TFG+
Sbjct: 401 SPDKVTFGT 409



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 20/239 (8%)

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQ------LSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127
           G  P V S + +L  + RA +         SL    F +   I P + TY+ +++ LC+ 
Sbjct: 114 GCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRR--IAPNLQTYNIILRSLCAR 171

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM-----KEDGLCV 182
           G ++ A  L   + R GV P   TY+            + A+ L  +M     + D +C 
Sbjct: 172 GDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCY 231

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWND-VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             + S     GMF      +   ++W   V+  G  P+L +Y +++ GLC+  ++KEA +
Sbjct: 232 NALLSGCFRTGMF------EKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGE 285

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
            +  M+        VT+  L  GL +S  + +  R+   + +  +       N   K +
Sbjct: 286 VWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGF 344



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 10/131 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++  LI+G C   ++D A     EM E+   PN+VTYN L++G     S          I
Sbjct: 581 VHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGS----------I 630

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  ++  +   G++PD+ +++  +      ++    +  LN +   GI PTV T+S +
Sbjct: 631 DKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSIL 690

Query: 121 VKCLCSCGRIE 131
           V+ +   G I+
Sbjct: 691 VRAVIKYGPIQ 701



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 4/110 (3%)

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG----PDLD 221
           + A+  +R +     C P + S+N L+  F+   R       +  +     G    P+L 
Sbjct: 100 DAALAAFRDLPSLLGCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQ 159

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           +Y +++  LC +     A   F  +  +G+ P +VT+ TL  GL + D L
Sbjct: 160 TYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQL 209


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 143/321 (44%), Gaps = 45/321 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLN------------------- 42
           YTSLI  +    R   A     +M E G +P ++TYNV+LN                   
Sbjct: 220 YTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGM 279

Query: 43  ---GV-------------CRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
              GV             CRR SL+           A +VF+EM++ G  PD  +F+ +L
Sbjct: 280 KSSGVAPDDYTYNTLISCCRRGSLY---------EEAAQVFEEMKLSGFSPDKVTFNTLL 330

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
            VY ++ +P+ +++ L  M+  G  P++ TY+S++      G + +A EL  +MV  G+ 
Sbjct: 331 DVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIK 390

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P   TY      +        AM+++ +M+  G C PN+ ++N LI M     R   + +
Sbjct: 391 PDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAG-CKPNICTFNALIKMHGNRGRFAEMMK 449

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++ +++     PD+ ++  L+    +     E    F EM   G +P++ TF TL     
Sbjct: 450 VFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYS 509

Query: 267 QSDMLRTWRRLKKKLDEESIT 287
           +    +    + K++ E  +T
Sbjct: 510 RCGSFQQAMAVYKRMLEAGVT 530



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 115/264 (43%), Gaps = 20/264 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI  + +      A      M+E GV P++ +YN +L  + R      SE       
Sbjct: 501 FNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSE------- 553

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK---GIC-PTVATY 117
              KVF EM+    +P+  ++  +LH Y+ + +    +++++ + E+   G+  P     
Sbjct: 554 ---KVFAEMKDGRCKPNELTYCSLLHAYANSKE----IERMHTLAEEIYSGLTEPVPVLL 606

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
            ++V     C  + + E    E+ + G  P   T N     Y  R+    A ++   M E
Sbjct: 607 KTLVLVNSKCDLLMETEHAFEELKKKG-SPDLSTLNAMIAIYGRRQMVAKANEILNFMNE 665

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G   P++ +YN L+ M       +   E+  ++   GL PDL SY  +I   C   + K
Sbjct: 666 SGFS-PSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMK 724

Query: 238 EACQYFVEMIEKGLLPQKVTFETL 261
           +A + F  M   GL+P  +T+ T 
Sbjct: 725 DASRIFSYMKTYGLVPDVITYNTF 748



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 131/327 (40%), Gaps = 76/327 (23%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G+ K    + A R  GEM   G +PN+ T+N L+     R       RF + ++
Sbjct: 396 YTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRG------RFAEMMK 449

Query: 62  NAEK-------------------------------VFDEMRVRGIEPDVTSFSIVLHVYS 90
             E+                               VF EM+  G  P+  +F+ ++  YS
Sbjct: 450 VFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYS 509

Query: 91  RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC-PSA 149
           R    Q ++     M E G+ P +++Y++V+  L   G  E +E++  EM ++G C P+ 
Sbjct: 510 RCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEM-KDGRCKPNE 568

Query: 150 ETYNCFFKEYRGRKDANGAMKL-----------------------------------YRQ 174
            TY      Y   K+      L                                   + +
Sbjct: 569 LTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEE 628

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           +K+ G   P++ + N +I ++     +    EI N +  SG  P L +Y  L++     +
Sbjct: 629 LKKKG--SPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSE 686

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETL 261
            ++ + +   E++ KGL P  +++ T+
Sbjct: 687 NFERSEEVLKEILAKGLKPDLISYNTV 713



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 82/169 (48%), Gaps = 11/169 (6%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           E +++   P++ T N ++    RR          + +  A ++ + M   G  P + +++
Sbjct: 627 EELKKKGSPDLSTLNAMIAIYGRR----------QMVAKANEILNFMNESGFSPSLATYN 676

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            +++++SR+   + S + L  +  KG+ P + +Y++V+   C  GR++DA  +   M   
Sbjct: 677 SLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTY 736

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           G+ P   TYN F   Y        A+ + R M + G C  N ++YN ++
Sbjct: 737 GLVPDVITYNTFVASYAADSLFEDAIGVVRYMIKHG-CKRNQNTYNSIV 784



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 12/154 (7%)

Query: 6   IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEK 65
           IYG  +   +  A   L  M E G  P++ TYN L+    R      SE FE++    E+
Sbjct: 646 IYG--RRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSR------SENFERS----EE 693

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           V  E+  +G++PD+ S++ V+  Y R  + + +    ++MK  G+ P V TY++ V    
Sbjct: 694 VLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYA 753

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           +    EDA  ++  M+++G   +  TYN     Y
Sbjct: 754 ADSLFEDAIGVVRYMIKHGCKRNQNTYNSIVDGY 787



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 4/187 (2%)

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
           LN +++ G    V  Y+S++    S GR  DA  +  +M   G  P+  TYN     Y G
Sbjct: 205 LNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVILNVY-G 263

Query: 162 RKDA--NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
           +     +    L   MK  G+  P+ ++YN LI      +  +   +++ ++K SG  PD
Sbjct: 264 KMGMPWSKISGLVHGMKSSGVA-PDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPD 322

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
             ++  L+    + ++ KEA +   EM   G  P  VT+ +L     +  +LR    LK 
Sbjct: 323 KVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKD 382

Query: 280 KLDEESI 286
           ++ E+ I
Sbjct: 383 QMVEKGI 389



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 66/132 (50%), Gaps = 10/132 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+Y   +    + +E  L E++ +G++P++++YN ++   CR   +          +
Sbjct: 675 YNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRM----------K 724

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++F  M+  G+ PDV +++  +  Y+     + ++  + +M + G      TY+S+V
Sbjct: 725 DASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYNSIV 784

Query: 122 KCLCSCGRIEDA 133
              C   R  DA
Sbjct: 785 DGYCKHSRRADA 796


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 144/280 (51%), Gaps = 12/280 (4%)

Query: 8   GWCKINRIDMAERFLGEM-IERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKV 66
           G+CK  RI+ A RF+ EM +  G  P+  T+N+L+NG+ +             +++A +V
Sbjct: 274 GFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGH----------VKHALEV 323

Query: 67  FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS 126
            D M   G +PD+ +++ ++    +  +   ++  LN M E+   P   TY++++  LC 
Sbjct: 324 MDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCK 383

Query: 127 CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH 186
             ++E+A +L   +   G+ P   TYN   +     ++   AM+LY++MK  G C P+  
Sbjct: 384 ENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKG-CHPDEF 442

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
           +YN+LI       ++     +  +++ SG   ++ +Y  LI G C+ ++  EA + F +M
Sbjct: 443 TYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQM 502

Query: 247 IEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             +G+    VT+ TL  GL +S+ +    +L  ++  E +
Sbjct: 503 ELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGL 542



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 140/326 (42%), Gaps = 61/326 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           Y SLI G CK+  +D A + L +MIER   PN VTYN +++ +C+   +           
Sbjct: 339 YNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLT 398

Query: 51  ---------------------------------------HPSER----------FEKTIR 61
                                                  HP E           F   ++
Sbjct: 399 GKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQ 458

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  EM V G   +V +++ ++  + +  +   + +  + M+ +G+     TY++++
Sbjct: 459 EALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLI 518

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R+E+A +L+ +M+  G+ P   TYN     +    D   A  + + M  DG C
Sbjct: 519 DGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDG-C 577

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  LI       R++   ++   ++  G+     +Y  +I  L  +++ KEA +
Sbjct: 578 EPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVR 637

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
            F EMIEK   P  VT++ ++RGL Q
Sbjct: 638 LFREMIEKAEAPDAVTYKIVFRGLCQ 663



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 125/260 (48%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ G  K   +  A   +  M+  G +P++ TYN L++G+C+             + 
Sbjct: 304 FNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGE----------VD 353

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A KV ++M  R   P+  +++ ++    + +Q + +      +  KGI P V TY+S++
Sbjct: 354 EAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLI 413

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC       A EL  EM   G  P   TYN        R     A+ L ++M+  G C
Sbjct: 414 QGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSG-C 472

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+ +YN LI  F    R+    EI++ ++  G+  +  +Y  LI GLC+ ++ +EA Q
Sbjct: 473 ARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQ 532

Query: 242 YFVEMIEKGLLPQKVTFETL 261
              +MI +GL P K T+ +L
Sbjct: 533 LMDQMIMEGLRPDKFTYNSL 552



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 133/293 (45%), Gaps = 53/293 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK  RI  AE    +M  +GV  N VTYN L++G+C+      SER E+   
Sbjct: 479 YNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCK------SERVEE--- 529

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D+M + G+ PD  +++ +L  + +A   + + D +  M   G  P + TY +++
Sbjct: 530 -ASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLI 588

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+E A +LL  +   G+  +   YN   +    RK +  A++L+R+M E    
Sbjct: 589 AGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIE---- 644

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ-KWKEAC 240
                                               PD  +Y ++  GLC+      EA 
Sbjct: 645 --------------------------------KAEAPDAVTYKIVFRGLCQGGGPIGEAV 672

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL------KKKLDEESIT 287
            + +EM+E+G +P+  +F  L  GL    M+ T  +L      K K  +  +T
Sbjct: 673 DFVMEMLERGYVPEFSSFYMLAEGLFSLAMVGTLIKLIDMVMEKAKFSDNEVT 725



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 134/266 (50%), Gaps = 14/266 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+++ G+ +   +D A R   +M+E G     VT NVL+NG C+   +  + RF     
Sbjct: 233 FTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRF----- 287

Query: 62  NAEKVFDEMRVR-GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                 +EM +R G  PD  +F+++++  S+    + +L+ ++ M  +G  P + TY+S+
Sbjct: 288 -----IEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSL 342

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G +++A ++L +M+     P+  TYN              A KL   +   G+
Sbjct: 343 ISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGI 402

Query: 181 CVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            +P++ +YN LI G+ ++ N   +  E++ ++K  G  PD  +Y MLI  LC + K +EA
Sbjct: 403 -LPDVCTYNSLIQGLCLSRNHT-VAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEA 460

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGL 265
                EM   G     +T+ TL  G 
Sbjct: 461 LNLLKEMEVSGCARNVITYNTLIDGF 486



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 119/279 (42%), Gaps = 47/279 (16%)

Query: 26  IERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85
           +E GV  N   YN LLN +     L          +  E     M  RGI PDV++F+I+
Sbjct: 152 VEFGVVANTHFYNFLLNVLVDGNKL----------KLVEIAHSNMVSRGIRPDVSTFNIL 201

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK----------------------- 122
           +    RAHQ + ++  +  M++ G+ P   T++++++                       
Sbjct: 202 IKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGC 261

Query: 123 ------------CLCSCGRIEDAEELLGEM-VRNGVCPSAETYNCFFKEYRGRKDANGAM 169
                         C  GRIE+A   + EM +R G  P   T+N              A+
Sbjct: 262 VVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHAL 321

Query: 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
           ++   M  +G   P++++YN LI     L  +D   ++ N +      P+  +Y  +I  
Sbjct: 322 EVMDMMLREGFD-PDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIIST 380

Query: 230 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           LC++ + +EA +  + +  KG+LP   T+ +L +GL  S
Sbjct: 381 LCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLS 419



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 85/178 (47%)

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
           K+    P+ + +  V+  L   G  +  +++L EM  +      ++   F + Y      
Sbjct: 81  KQPNFKPSSSIFKEVLHKLGKAGEFDAMKDILKEMKISLSVIDNDSLLVFIESYASFGLY 140

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
           N  ++    M+ +   V N H YN L+ + +  N++ +V    +++   G+ PD+ ++ +
Sbjct: 141 NEILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNI 200

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           LI  LC   + + A     EM + GLLP + TF T+ +G I+   L    R+K+++ E
Sbjct: 201 LIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVE 258


>gi|125573832|gb|EAZ15116.1| hypothetical protein OsJ_30529 [Oryza sativa Japonica Group]
          Length = 906

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 135/280 (48%), Gaps = 12/280 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +I   C   R+D++   LG+++  G EP+V+TYN+++  +C           +  + +A 
Sbjct: 381 MIIAMCSEGRLDVSYYLLGKLVAYGCEPSVLTYNIVIKCLCE----------QNRMDDAR 430

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +   M+ RG+ PD+++ SI++  Y +  + + +L     M + GI P++A Y S++ CL
Sbjct: 431 ALITIMQSRGVRPDMSTNSIMVTAYCKIGEIESALHLFGEMAKDGIEPSIAVYDSIIVCL 490

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C   R+++AE  L +M+R G+ P    Y      Y   +      +++ +M + GL  P 
Sbjct: 491 CRMRRLKEAEATLRQMIREGLAPDEIIYTSLINGYSLTRQTRNVCRIFDEMLKRGL-QPG 549

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
            H+Y  LI   +  N++         +   G+ P    YTMLI+    K   +      V
Sbjct: 550 PHAYGSLINGLVKGNKIRKALGYLERMLEEGIAPQTVIYTMLINQFFRKGDVRLGLDLVV 609

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWR-RLKKKLDE 283
            M++  + P  +T+  L  G+ ++   R  R  L KKL E
Sbjct: 610 LMMKTNVAPDLITYGALVTGICRNIARRGMRPSLAKKLKE 649



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 141/319 (44%), Gaps = 41/319 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK--T 59
           YT++I+G  +  R+D   +   EMI+RG++P+  TYNV++   C+   +  +    K   
Sbjct: 226 YTTMIWGLFEHGRVDHGLQMYHEMIDRGIQPDAATYNVMIRWYCKSKWVGAAMDIYKDGK 285

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS---------RAHQPQLSLD---------- 100
           +  AE +FD+M   G+ PD   F  +   +          +A +    LD          
Sbjct: 286 LGEAENLFDKMLESGLFPDHVMFISIARFFPKGWVVLFVRKALKAVAKLDCGAKLLELSS 345

Query: 101 ------KLNFMKE----------KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
                  ++  KE            + P     + ++  +CS GR++ +  LLG++V  G
Sbjct: 346 LAGGCSNMSLQKEADHLLDEIVTSNVLPVNIVLNLMIIAMCSEGRLDVSYYLLGKLVAYG 405

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
             PS  TYN   K    +   + A  L   M+  G+  P+M + +I++  +  +  ++  
Sbjct: 406 CEPSVLTYNIVIKCLCEQNRMDDARALITIMQSRGV-RPDMSTNSIMVTAYCKIGEIESA 464

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             ++ ++   G+ P +  Y  +I  LC  ++ KEA     +MI +GL P ++ + +L  G
Sbjct: 465 LHLFGEMAKDGIEPSIAVYDSIIVCLCRMRRLKEAEATLRQMIREGLAPDEIIYTSLING 524

Query: 265 LIQSDMLRTWRRLKKKLDE 283
                + R  R + +  DE
Sbjct: 525 Y---SLTRQTRNVCRIFDE 540



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 136/330 (41%), Gaps = 70/330 (21%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR---------------RAS 49
           ++  +CKI  I+ A    GEM + G+EP++  Y+ ++  +CR               R  
Sbjct: 451 MVTAYCKIGEIESALHLFGEMAKDGIEPSIAVYDSIIVCLCRMRRLKEAEATLRQMIREG 510

Query: 50  LHPSE----------RFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
           L P E             +  RN  ++FDEM  RG++P   ++  +++   + ++ + +L
Sbjct: 511 LAPDEIIYTSLINGYSLTRQTRNVCRIFDEMLKRGLQPGPHAYGSLINGLVKGNKIRKAL 570

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF---- 155
             L  M E+GI P    Y+ ++      G +    +L+  M++  V P   TY       
Sbjct: 571 GYLERMLEEGIAPQTVIYTMLINQFFRKGDVRLGLDLVVLMMKTNVAPDLITYGALVTGI 630

Query: 156 ----------------FKEYR---------------GRKDANG---------AMKLYRQM 175
                            KE R               G++  N          A  + + +
Sbjct: 631 CRNIARRGMRPSLAKKLKEARYMLFRMLPQIIDTRNGKQKDNQICTEEMIQVAQGIIQDL 690

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           +E+G+ VP++H YN +I      N+MD    + + +  +G+ P+  +YT+L++       
Sbjct: 691 EENGM-VPDLHIYNGMINGLCRANKMDDAYSLLSVMDQTGILPNHVTYTILMNNQIRLGD 749

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
              A Q F  +   G +  K+T+ T  +GL
Sbjct: 750 INHAIQLFNSLNSDGCVFDKITYNTFIKGL 779



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 131/321 (40%), Gaps = 48/321 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y S+I   C++ R+  AE  L +MI  G+ P+ + Y  L+NG              +  
Sbjct: 482 VYDSIIVCLCRMRRLKEAEATLRQMIREGLAPDEIIYTSLINGY----------SLTRQT 531

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           RN  ++FDEM  RG++P   ++  +++   + ++ + +L  L  M E+GI P    Y+ +
Sbjct: 532 RNVCRIFDEMLKRGLQPGPHAYGSLINGLVKGNKIRKALGYLERMLEEGIAPQTVIYTML 591

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF------------FKEYRGRKDANGA 168
           +      G +    +L+  M++  V P   TY                +    +K     
Sbjct: 592 INQFFRKGDVRLGLDLVVLMMKTNVAPDLITYGALVTGICRNIARRGMRPSLAKKLKEAR 651

Query: 169 MKLYRQM-----------KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
             L+R +           K++ +C   M               + + + I  D++ +G+ 
Sbjct: 652 YMLFRMLPQIIDTRNGKQKDNQICTEEM---------------IQVAQGIIQDLEENGMV 696

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           PDL  Y  +I+GLC   K  +A      M + G+LP  VT+  L    I+   +    +L
Sbjct: 697 PDLHIYNGMINGLCRANKMDDAYSLLSVMDQTGILPNHVTYTILMNNQIRLGDINHAIQL 756

Query: 278 KKKLDEESITFGSEFQNYHFK 298
              L+ +   F     N   K
Sbjct: 757 FNSLNSDGCVFDKITYNTFIK 777



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 117/251 (46%), Gaps = 18/251 (7%)

Query: 41  LNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLD 100
           L G C   SL          + A+ + DE+    +  +V   +IVL++   A   +  LD
Sbjct: 346 LAGGCSNMSLQ---------KEADHLLDEI----VTSNVLPVNIVLNLMIIAMCSEGRLD 392

Query: 101 KLNFMKEK----GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
              ++  K    G  P+V TY+ V+KCLC   R++DA  L+  M   GV P   T +   
Sbjct: 393 VSYYLLGKLVAYGCEPSVLTYNIVIKCLCEQNRMDDARALITIMQSRGVRPDMSTNSIMV 452

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y    +   A+ L+ +M +DG+  P++  Y+ +I     + R+         +   GL
Sbjct: 453 TAYCKIGEIESALHLFGEMAKDGI-EPSIAVYDSIIVCLCRMRRLKEAEATLRQMIREGL 511

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD   YT LI+G    ++ +  C+ F EM+++GL P    + +L  GL++ + +R    
Sbjct: 512 APDEIIYTSLINGYSLTRQTRNVCRIFDEMLKRGLQPGPHAYGSLINGLVKGNKIRKALG 571

Query: 277 LKKKLDEESIT 287
             +++ EE I 
Sbjct: 572 YLERMLEEGIA 582



 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 126/283 (44%), Gaps = 35/283 (12%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR---RASLHPS---- 53
           +YT LI  + +   + +    +  M++  V P+++TY  L+ G+CR   R  + PS    
Sbjct: 587 IYTMLINQFFRKGDVRLGLDLVVLMMKTNVAPDLITYGALVTGICRNIARRGMRPSLAKK 646

Query: 54  ---ERF------------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
               R+                        E+ I+ A+ +  ++   G+ PD+  ++ ++
Sbjct: 647 LKEARYMLFRMLPQIIDTRNGKQKDNQICTEEMIQVAQGIIQDLEENGMVPDLHIYNGMI 706

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
           +   RA++   +   L+ M + GI P   TY+ ++      G I  A +L   +  +G  
Sbjct: 707 NGLCRANKMDDAYSLLSVMDQTGILPNHVTYTILMNNQIRLGDINHAIQLFNSLNSDGCV 766

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
               TYN F K          A+     M + G  VP+  SY+ L+ + +A N +D+V +
Sbjct: 767 FDKITYNTFIKGLSLAGRMKEALSFLLMMHKRGF-VPSKASYDKLMELLLAENAIDIVLQ 825

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
           ++ D+   G  P   +YT L+  L +  +W EA + F  M++K
Sbjct: 826 LFEDMLFQGYTPRYANYTSLLLVLAKDGRWSEADRIFTMMLKK 868



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/315 (21%), Positives = 127/315 (40%), Gaps = 55/315 (17%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTSLI G+    +     R   EM++RG++P    Y  L+NG+ +             I
Sbjct: 517 IYTSLINGYSLTRQTRNVCRIFDEMLKRGLQPGPHAYGSLINGLVK----------GNKI 566

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R A    + M   GI P    ++++++ + R    +L LD +  M +  + P + TY ++
Sbjct: 567 RKALGYLERMLEEGIAPQTVIYTMLINQFFRKGDVRLGLDLVVLMMKTNVAPDLITYGAL 626

Query: 121 VKCLC----------SCGR----------------------------------IEDAEEL 136
           V  +C          S  +                                  I+ A+ +
Sbjct: 627 VTGICRNIARRGMRPSLAKKLKEARYMLFRMLPQIIDTRNGKQKDNQICTEEMIQVAQGI 686

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
           + ++  NG+ P    YN            + A  L   M + G+ +PN  +Y IL+   +
Sbjct: 687 IQDLEENGMVPDLHIYNGMINGLCRANKMDDAYSLLSVMDQTGI-LPNHVTYTILMNNQI 745

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
            L  ++   +++N +   G   D  +Y   I GL    + KEA  + + M ++G +P K 
Sbjct: 746 RLGDINHAIQLFNSLNSDGCVFDKITYNTFIKGLSLAGRMKEALSFLLMMHKRGFVPSKA 805

Query: 257 TFETLYRGLIQSDML 271
           +++ L   L+  + +
Sbjct: 806 SYDKLMELLLAENAI 820



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 18/183 (9%)

Query: 98  SLDKLNF----MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           ++DK  F    M   G+ P V  Y S+    C   R  DA ++   M+  G+    E   
Sbjct: 132 AVDKARFLFDAMLRSGLTPPVRVYRSLAFAYCKARRSLDASDMCQLMLIKGMYLDRELST 191

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
              + +        A+ ++R+MK D     + ++Y  +I       R+D   ++++++  
Sbjct: 192 ALIRVFCREGRLEPALDVFRRMKGDEHVQLDAYAYTTMIWGLFEHGRVDHGLQMYHEMID 251

Query: 214 SGLGPDLDSYTMLIHGLCEKQKW-------------KEACQYFVEMIEKGLLPQKVTFET 260
            G+ PD  +Y ++I   C K KW              EA   F +M+E GL P  V F +
Sbjct: 252 RGIQPDAATYNVMIRWYC-KSKWVGAAMDIYKDGKLGEAENLFDKMLESGLFPDHVMFIS 310

Query: 261 LYR 263
           + R
Sbjct: 311 IAR 313



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 2/151 (1%)

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           V+ ++ ++  LCS G ++ A  L   M+R+G+ P    Y      Y   + +  A  + +
Sbjct: 117 VSDFALLIPGLCSEGAVDKARFLFDAMLRSGLTPPVRVYRSLAFAYCKARRSLDASDMCQ 176

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS-GLGPDLDSYTMLIHGLCE 232
            M   G+ +    S   LI +F    R++   +++  +KG   +  D  +YT +I GL E
Sbjct: 177 LMLIKGMYLDRELS-TALIRVFCREGRLEPALDVFRRMKGDEHVQLDAYAYTTMIWGLFE 235

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             +     Q + EMI++G+ P   T+  + R
Sbjct: 236 HGRVDHGLQMYHEMIDRGIQPDAATYNVMIR 266


>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 628

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 146/326 (44%), Gaps = 72/326 (22%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I   CK   ++ A+ F  EM E+G+ PNVVTY  LL+G+C  +    ++R      
Sbjct: 256 YSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKR------ 309

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F EM   G+ PDV +FS+++    +  + + +    + M ++ + P+  TY+ ++
Sbjct: 310 ----LFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILI 365

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
           +  C  G +++ +++   MV       A +Y+   K Y    + +GAM LYR+M +    
Sbjct: 366 EGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGIQ 425

Query: 178 --------------------------------------DGLC------------------ 181
                                                 DGLC                  
Sbjct: 426 PTVITYSKVGDARKLFGEIQFQDMVLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLENC 485

Query: 182 --VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
               N+  +N LI       ++++  E++N +    L PD+ +YT++I+GLC+  + ++A
Sbjct: 486 KFASNVAIFNSLINGMCRSEKLEIAWELFNRLCNEALQPDVVTYTIMIYGLCKVGQPQKA 545

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGL 265
              F+EM EKG  P  VTF TL RGL
Sbjct: 546 YDLFLEMEEKGCAPNVVTFNTLMRGL 571



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 126/263 (47%), Gaps = 15/263 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+L+ G C   +I  A R    M      P+ +T  VL++G+CR  +   + +  + + 
Sbjct: 180 FTNLVKGLCLEGKIGEAVRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMI 239

Query: 62  NAEKVFDEMRVRGI--EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           N    F      GI  +P V S+S ++    +    + + +    MKEKGI P V TY+S
Sbjct: 240 NGNSDF------GINCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTS 293

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGR-KDANGAMKLYRQMK 176
           ++  LCS    E+A+ L  EMV +G+ P   T++         G+ K+A+G   L  Q  
Sbjct: 294 LLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRY 353

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
            +    P+  +YNILI  +     +D  ++I+  +       D  SY++L+   C+  + 
Sbjct: 354 VE----PSTRTYNILIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEV 409

Query: 237 KEACQYFVEMIEKGLLPQKVTFE 259
             A   + EM+++G+ P  +T+ 
Sbjct: 410 HGAMILYREMMDRGIQPTVITYS 432



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 112/253 (44%), Gaps = 15/253 (5%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A  F  +MI     P +  +N L   + ++          K   +   +   M   G+  
Sbjct: 91  ALHFFNQMIHMQTTPALSRFNNLFGALAKK----------KQYLHVISMCGRMNSIGLLK 140

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           +  S +I+L+      +          +  KG  P   T++++VK LC  G+I +A  + 
Sbjct: 141 NFISLNILLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVKGLCLEGKIGEAVRVF 200

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM----KEDGL-CVPNMHSYNILI 192
             M      PSA T            +   A+KL+  M     + G+ C P + SY+ +I
Sbjct: 201 KIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVVSYSCII 260

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                   ++  +E + ++K  G+ P++ +YT L+HGLC   +W+EA + F+EM++ GLL
Sbjct: 261 DSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLL 320

Query: 253 PQKVTFETLYRGL 265
           P  VTF  L   L
Sbjct: 321 PDVVTFSVLIGAL 333



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 111/251 (44%), Gaps = 17/251 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+   C + R+       G ++ +G  PN  T+  L+ G+C           E  I  A 
Sbjct: 148 LLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVKGLC----------LEGKIGEAV 197

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRA----HQPQLSLDKLNFMKEKGI-C-PTVATYS 118
           +VF  M V    P   +  +++    R     +  +L    +N   + GI C PTV +YS
Sbjct: 198 RVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVVSYS 257

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++  LC  G +E A+E   EM   G+ P+  TY           +   A +L+ +M + 
Sbjct: 258 CIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDH 317

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           GL +P++ ++++LIG    + ++     +++ +    + P   +Y +LI G C      E
Sbjct: 318 GL-LPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDE 376

Query: 239 ACQYFVEMIEK 249
             + F+ M+ K
Sbjct: 377 GKKIFLSMVNK 387



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 117/291 (40%), Gaps = 56/291 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           ++ LI   CK+ ++  A      M++R VEP+  TYN+L+ G C    +   ++      
Sbjct: 326 FSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIFLSMV 385

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIV---LHVYSRAH 93
                               +  +  A  ++ EM  RGI+P V ++S V     ++    
Sbjct: 386 NKRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGIQPTVITYSKVGDARKLFGEIQ 445

Query: 94  QPQLSLDKLNF----MKEKGIC---------------------PTVATYSSVVKCLCSCG 128
              + LD +++    +   G+C                       VA ++S++  +C   
Sbjct: 446 FQDMVLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGMCRSE 505

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
           ++E A EL   +    + P   TY               A  L+ +M+E G C PN+ ++
Sbjct: 506 KLEIAWELFNRLCNEALQPDVVTYTIMIYGLCKVGQPQKAYDLFLEMEEKG-CAPNVVTF 564

Query: 189 NILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           N L+ G+ +   R  +V E+ + +    L PD  +  +++  L + + + E
Sbjct: 565 NTLMRGLCLNSERPKIV-ELLHKMAARKLSPDASTLLIVMDILLKDENYHE 614



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 106/251 (42%), Gaps = 15/251 (5%)

Query: 41  LNGVCRRASLHPSERF--------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92
           +N      S +P E+F        + T+  A   F++M      P ++ F+ +    ++ 
Sbjct: 61  INSTPNTQSDNPLEQFLEINCKSGDFTLHEALHFFNQMIHMQTTPALSRFNNLFGALAKK 120

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
            Q    +     M   G+     + + ++ CLCS  R+ +   + G ++R G  P+  T+
Sbjct: 121 KQYLHVISMCGRMNSIGLLKNFISLNILLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTF 180

Query: 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM----ALNRMDMVREIW 208
               K          A+++++ M     C P+  +  +LI          N + +   + 
Sbjct: 181 TNLVKGLCLEGKIGEAVRVFKIMGVFD-CRPSAITCGVLISGLCRTGNTCNALKLHEAMI 239

Query: 209 NDVKGSGLG--PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           N     G+   P + SY+ +I  LC+    + A ++FVEM EKG+ P  VT+ +L  GL 
Sbjct: 240 NGNSDFGINCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLC 299

Query: 267 QSDMLRTWRRL 277
            +      +RL
Sbjct: 300 SASEWEEAKRL 310



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 10/151 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y   + G CK   +  A      +       NV  +N L+NG+CR      SE+ E   
Sbjct: 458 IYNVYLDGLCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGMCR------SEKLEI-- 509

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++F+ +    ++PDV +++I+++   +  QPQ + D    M+EKG  P V T++++
Sbjct: 510 --AWELFNRLCNEALQPDVVTYTIMIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTL 567

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
           ++ LC         ELL +M    + P A T
Sbjct: 568 MRGLCLNSERPKIVELLHKMAARKLSPDAST 598


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 137/264 (51%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I   C+   ID A     EM  +G++ +VVTYN L+ G+C+    +          
Sbjct: 221 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWN---------- 270

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +   +  +M  R I P+V +F+++L V+ +  + Q + +    M  +GI P + TY++++
Sbjct: 271 DGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLM 330

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R+ +A  +L  MVRN   P   T+    K Y   K  +  MK++R + + GL 
Sbjct: 331 DGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGL- 389

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V N  +Y+IL+  F    ++ +  E++ ++   G+ PD+ +Y +L+ GLC+  K ++A +
Sbjct: 390 VANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALE 449

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F ++ +  +    V + T+  G+
Sbjct: 450 IFEDLQKSKMDLGIVMYTTIIEGM 473



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 141/288 (48%), Gaps = 15/288 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G     ++  A   +  M+E G +P+VVTYN ++NG+CR               
Sbjct: 151 FNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSL--------- 201

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +M  R ++ DV ++S ++    R      ++     M+ KGI  +V TY+S+V
Sbjct: 202 -ALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLV 260

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  G+  D   LL +MV   + P+  T+N     +        A +LY++M   G+ 
Sbjct: 261 RGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGIS 320

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN L+  +   NR+     + + +  +   PD+ ++T LI G C  ++  +  +
Sbjct: 321 -PNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMK 379

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
            F  + ++GL+   VT+  L +G  QS  +    +L ++L +E ++ G
Sbjct: 380 VFRNISKRGLVANAVTYSILVQGFCQSGKI----KLAEELFQEMVSHG 423



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 145/283 (51%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+ G CK  + +     L +M+ R + PNV+T+NVLL+   +          E  ++
Sbjct: 256 YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK----------EGKLQ 305

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +++ EM  RGI P++ +++ ++  Y   ++   + + L+ M      P + T++S++
Sbjct: 306 EANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLI 365

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R++D  ++   + + G+  +A TY+   + +        A +L+++M   G+ 
Sbjct: 366 KGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV- 424

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y IL+       +++   EI+ D++ S +   +  YT +I G+C+  K ++A  
Sbjct: 425 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWN 484

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KG+ P  +T+  +  GL +   L     L +K++E+
Sbjct: 485 LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEED 527



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 145/297 (48%), Gaps = 18/297 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +I  +C+  +   A   LG++++ G EP+  T+N L+ G+            E  +  A 
Sbjct: 119 MINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLF----------LEGKVSEAV 168

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            + D M   G +PDV +++ +++   R+    L+LD L  M+E+ +   V TYS+++  L
Sbjct: 169 VLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSL 228

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMKEDGLCVP 183
           C  G I+ A  L  EM   G+  S  TYN   +   +  K  +GA+ L   +  +   VP
Sbjct: 229 CRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE--IVP 286

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N+ ++N+L+ +F+   ++    E++ ++   G+ P++ +Y  L+ G C + +  EA    
Sbjct: 287 NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 346

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLKKK-LDEESITFGSEFQNY 295
             M+     P  VTF +L +G        D ++ +R + K+ L   ++T+    Q +
Sbjct: 347 DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGF 403



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 126/279 (45%), Gaps = 17/279 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+  + K  ++  A     EMI RG+ PN++TYN L++G C           +  + 
Sbjct: 291 FNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYC----------MQNRLS 340

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D M      PD+ +F+ ++  Y    +    +     + ++G+     TYS +V
Sbjct: 341 EANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILV 400

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G+I+ AEEL  EMV +GV P   TY               A++++  +++  + 
Sbjct: 401 QGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 460

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWN---DVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           +  +    I+ GM     +   V + WN    +   G+ P++ +YT++I GLC+K    E
Sbjct: 461 LGIVMYTTIIEGMC----KGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE 516

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A     +M E G  P   T+ TL R  ++   L    +L
Sbjct: 517 ANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKL 555



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 132/279 (47%), Gaps = 21/279 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ G+C+  +I +AE    EM+  GV P+V+TY +LL+G+C    L           
Sbjct: 396 YSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLE---------- 445

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F++++   ++  +  ++ ++    +  + + + +    +  KG+ P V TY+ ++
Sbjct: 446 KALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMI 505

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G + +A  LL +M  +G  P+  TYN   + +    D   + KL  +MK  G  
Sbjct: 506 SGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFS 565

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  S  ++I M ++  +   +R   +  KGS    DL         L   +K + +  
Sbjct: 566 A-DASSIKMVIDMLLSAMKRLTLRYCLS--KGSKSRQDLLE-------LSGSEKIRLSSL 615

Query: 242 YFVEMIEKGLLPQKVTFETL-YRGLIQSDMLRTWRRLKK 279
            FV+M     +   +   T+  RG+  +++ R  R+L++
Sbjct: 616 TFVKMFPCNTITTSLNVNTIEARGMNSAELNRDLRKLRR 654



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 122/272 (44%), Gaps = 11/272 (4%)

Query: 16  DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI 75
           D A     EMI     P++V ++   + + R    +    F K          ++ + GI
Sbjct: 60  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCK----------QLELNGI 109

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
             ++ + +I+++ + R  +   +   L  + + G  P   T+++++K L   G++ +A  
Sbjct: 110 AHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVV 169

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           L+  MV NG  P   TYN          D + A+ L R+M+E  +   ++ +Y+ +I   
Sbjct: 170 LVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNV-KADVFTYSTIIDSL 228

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
                +D    ++ +++  G+   + +Y  L+ GLC+  KW +      +M+ + ++P  
Sbjct: 229 CRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNV 288

Query: 256 VTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +TF  L    ++   L+    L K++    I+
Sbjct: 289 ITFNVLLDVFVKEGKLQEANELYKEMITRGIS 320



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 10/126 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT++I G CK  +++ A      +  +GV+PNV+TY V+++G+C++ SL          
Sbjct: 465 MYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLS--------- 515

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +  +M   G  P+  +++ ++  + R      S   +  MK  G     ++   V
Sbjct: 516 -EANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMV 574

Query: 121 VKCLCS 126
           +  L S
Sbjct: 575 IDMLLS 580



 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 10/57 (17%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           AE    EMI+RG+ PN +TY+ L++G C+          E  +  A ++ D M  +G
Sbjct: 718 AEELHKEMIQRGIAPNTITYSSLIDGFCK----------ENRLDEANQMLDLMVTKG 764


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 145/318 (45%), Gaps = 46/318 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G C  + +D A   L EM   GV+PNVV Y+ LL G CR      S R++    
Sbjct: 161 YGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGYCR------SGRWQ---- 210

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  KVF++M  RGI+PDV  F+ ++    +  +   +    + M ++G+ P V TY+ ++
Sbjct: 211 DVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLI 270

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY--------- 172
             LC  G + +A  L  EM   GV P   TYN       G  + + AM            
Sbjct: 271 NSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTV 330

Query: 173 ---------------------------RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
                                      R+M  +  C+ N+ +YN LIG F+ ++++ M  
Sbjct: 331 VEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAM 390

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            + +++  SGL PD  +Y++LI+G  +  +   A ++   M ++G+  +   +  L   +
Sbjct: 391 NLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAM 450

Query: 266 IQSDMLRTWRRLKKKLDE 283
            Q  M+     L  ++D+
Sbjct: 451 CQQGMMERAMGLFNEMDK 468



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 145/293 (49%), Gaps = 22/293 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+T LI   CK  +   A +    M++RG+EPNVVTYNVL+N +C+          E ++
Sbjct: 230 MFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCK----------EGSV 279

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK-LNFMKE--KG---ICPTV 114
           R A  +  EM  +G+ PDV +++ ++   S      L +D+ ++F++E  +G   + P V
Sbjct: 280 REALTLRKEMDDKGVAPDVVTYNTLIAGLSGV----LEMDEAMSFLEEMIQGDTVVEPDV 335

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
            T++SV+  LC  GR+  A ++   M   G   +  TYN     +        AM L  +
Sbjct: 336 VTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDE 395

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           +   GL  P+  +Y+ILI  F  +  +D   +    ++  G+  +L  Y  L+  +C++ 
Sbjct: 396 LAISGL-EPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQG 454

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             + A   F EM +K      + + T+  G  +S  ++T ++L + + +E + 
Sbjct: 455 MMERAMGLFNEM-DKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLA 506



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 141/298 (47%), Gaps = 17/298 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+++ G C   R   A   L  M   GV  +VVTY  L+ G+C  + L           
Sbjct: 126 YTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDA--------- 176

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ DEM   G++P+V  +S +L  Y R+ + Q        M  +GI P V  ++ ++
Sbjct: 177 -ALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLI 235

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+   A ++   MV+ G+ P+  TYN              A+ L ++M + G+ 
Sbjct: 236 DDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGV- 294

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWND-VKG-SGLGPDLDSYTMLIHGLCEKQKWKEA 239
            P++ +YN LI     +  MD       + ++G + + PD+ ++  +IHGLC+  +  +A
Sbjct: 295 APDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQA 354

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
            +    M E+G +   VT+  L  G ++   ++    L   +DE +I+ G E  ++ +
Sbjct: 355 VKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNL---MDELAIS-GLEPDSFTY 408



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 113/238 (47%), Gaps = 16/238 (6%)

Query: 33  NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG---IEPDVTSFSIVLHVY 89
           + V+YN +L  +CRR   H        +R A  +  +M         P+  S++ V+   
Sbjct: 82  DAVSYNTVLAALCRRGGDH--------LRQARSLLVDMSREAHPAARPNAVSYTTVMRGL 133

Query: 90  SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
             + +   ++  L  M+  G+   V TY ++++ LC    ++ A ELL EM  +GV P+ 
Sbjct: 134 CASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNV 193

Query: 150 ETYNCFFKEY--RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
             Y+C  + Y   GR    G  K++  M   G+  P++  +  LI       +     ++
Sbjct: 194 VVYSCLLRGYCRSGRWQDVG--KVFEDMSRRGI-KPDVIMFTGLIDDLCKEGKTGKAAKV 250

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            + +   GL P++ +Y +LI+ LC++   +EA     EM +KG+ P  VT+ TL  GL
Sbjct: 251 KDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGL 308



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 110/242 (45%), Gaps = 19/242 (7%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
              PN V+Y  ++ G+C  AS    E        A  +   M+  G+  DV ++  ++  
Sbjct: 118 AARPNAVSYTTVMRGLC--ASRRTGE--------AVALLRSMQASGVRADVVTYGTLIRG 167

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
              A +   +L+ L+ M   G+ P V  YS +++  C  GR +D  ++  +M R G+ P 
Sbjct: 168 LCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPD 227

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE-- 206
              +     +         A K+   M + GL  PN+ +YN+LI    +L +   VRE  
Sbjct: 228 VIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGL-EPNVVTYNVLIN---SLCKEGSVREAL 283

Query: 207 -IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL--PQKVTFETLYR 263
            +  ++   G+ PD+ +Y  LI GL    +  EA  +  EMI+   +  P  VTF ++  
Sbjct: 284 TLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIH 343

Query: 264 GL 265
           GL
Sbjct: 344 GL 345



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 90/200 (45%), Gaps = 26/200 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+ +++++ MA   + E+   G+EP+  TY++L+NG  +   +  +E+F  T+R
Sbjct: 373 YNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMR 432

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     A  +F+EM  +    D  ++S ++H   ++   +
Sbjct: 433 QRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMD-KNCGLDAIAYSTMIHGACKSGDMK 491

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
                +  M ++G+ P   TYS ++      G +E+AE +L +M  +G  P    ++   
Sbjct: 492 TVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLI 551

Query: 157 KEYRGRKDANGAMKLYRQMK 176
           K Y      +  +KL  +M+
Sbjct: 552 KGYSAEGQTDKVLKLIHEMR 571



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 10/121 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I+G CK   +   ++ + +M++ G+ P+ VTY++L+N   +   L           
Sbjct: 477 YSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLE---------- 526

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+V  +M   G  PDV  F  ++  YS   Q    L  ++ M+ K +       S+++
Sbjct: 527 EAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEMRAKNVAFDPKIISTII 586

Query: 122 K 122
           +
Sbjct: 587 R 587


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 140/290 (48%), Gaps = 15/290 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY +++ G CK      A   L  M +   +PN  TY ++++  C+   L          
Sbjct: 180 MYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLD--------- 230

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + +EM+ + I PD+ ++S ++    +  Q +        M    I P V T++SV
Sbjct: 231 -GATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSV 289

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G++EDAEE++  M+  GV P   TYN     Y  R   + A +++  M    +
Sbjct: 290 IDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSI 349

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ SYNILI  +    ++D   ++  ++   GL P + +  +L+HGL E  + K A 
Sbjct: 350 -EPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQ 408

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDM----LRTWRRLKKKLDEESI 286
            +F EM+  G +P   T  TL  G  ++ +    +  + +L+++ ++ +I
Sbjct: 409 NFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNI 458



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 142/290 (48%), Gaps = 17/290 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + S+I G CK  +++ AE  +  MIE+GV+P+V+TYN++++G   R            + 
Sbjct: 286 FNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQ----------VD 335

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++FD M  + IEPD+ S++I+++ Y+R  +   ++     + +KG+ P++ T + ++
Sbjct: 336 RAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLL 395

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM---KED 178
             L   GR + A+    EM+  G  P   T+      Y        AM  + ++   +ED
Sbjct: 396 HGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRRED 455

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
                N+  Y  +I       ++D     +  +   GL PD+ +YT +I G C++    E
Sbjct: 456 ----TNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDE 511

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
           A     +M + G L    T+  + RG ++S+ +   +   +++  +S +F
Sbjct: 512 AKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSF 561



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 134/270 (49%), Gaps = 18/270 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGV-EPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +T+LI G    N++  A     +++   + EPN V Y  ++NG+C++             
Sbjct: 145 FTTLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKG------------ 192

Query: 61  RNAEKVFDEMRVR---GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
            + +K FD +R+      +P+  +++IV+  + +      +   LN MK+K I P + TY
Sbjct: 193 -HTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTY 251

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           S+++  LC   + E+   L  EM+   + P+  T+N              A ++ R M E
Sbjct: 252 STLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIE 311

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G+  P++ +YN++I  +    ++D  REI++ +    + PD+ SY +LI+G   ++K  
Sbjct: 312 KGV-DPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKID 370

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           EA Q   E+ +KGL P  VT   L  GL +
Sbjct: 371 EAMQVCREISQKGLKPSIVTCNVLLHGLFE 400



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 124/287 (43%), Gaps = 17/287 (5%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           +D A     +M+     P+V +++ LL     +A +H      K   +   +F E+    
Sbjct: 53  LDDAFSLFRQMVRTKPLPSVASFSKLL-----KAMVH-----MKHYSSVVSLFREIHKLR 102

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           I       SIV++     H+  L    L    +KGI     T++++++ L +  +++DA 
Sbjct: 103 IPVHEFILSIVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAV 162

Query: 135 ELLGEMVRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
            L  ++VR  +C P+   Y         +     A  L R M E G   PN  +Y I+I 
Sbjct: 163 HLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLM-EQGSTKPNTRTYTIVID 221

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
            F     +D    + N++K   + PD+ +Y+ LI  LC+  +W+     F+EMI   + P
Sbjct: 222 AFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYP 281

Query: 254 QKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGSEFQNY 295
              TF ++  GL +   +          ++K +D + IT+      Y
Sbjct: 282 NVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGY 328



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 116/256 (45%), Gaps = 26/256 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNG------------VCRRAS 49
           Y  +I G+    ++D A      MI + +EP++++YN+L+NG            VCR  S
Sbjct: 321 YNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREIS 380

Query: 50  ---LHPS---------ERFE-KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
              L PS           FE    ++A+  FDEM   G  PD+ +   +L  Y +    +
Sbjct: 381 QKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVE 440

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++   + ++ +     +  Y++V+  LC  G+++ A     ++   G+ P   TY    
Sbjct: 441 EAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMI 500

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y      + A  + R+M+++G C+ +  +YN+++  F+  N++  ++    ++ G   
Sbjct: 501 SGYCQEGLLDEAKDMLRKMEDNG-CLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSF 559

Query: 217 GPDLDSYTMLIHGLCE 232
             +  +  +L+  + E
Sbjct: 560 SFEAATVELLMDIIAE 575



 Score = 40.4 bits (93), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT++I G CK  ++D A     ++   G+ P+V+TY  +++G C+          E  +
Sbjct: 460 IYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQ----------EGLL 509

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ 94
             A+ +  +M   G   D  ++++++  + R+++
Sbjct: 510 DEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNK 543


>gi|17047023|gb|AAL34928.1|AC079037_1 Putative PPR-repeat protein [Oryza sativa]
 gi|31429883|gb|AAP51872.1| hypothetical protein LOC_Os10g02650 [Oryza sativa Japonica Group]
          Length = 949

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 135/280 (48%), Gaps = 12/280 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +I   C   R+D++   LG+++  G EP+V+TYN+++  +C           +  + +A 
Sbjct: 404 MIIAMCSEGRLDVSYYLLGKLVAYGCEPSVLTYNIVIKCLCE----------QNRMDDAR 453

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +   M+ RG+ PD+++ SI++  Y +  + + +L     M + GI P++A Y S++ CL
Sbjct: 454 ALITIMQSRGVRPDMSTNSIMVTAYCKIGEIESALHLFGEMAKDGIEPSIAVYDSIIVCL 513

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C   R+++AE  L +M+R G+ P    Y      Y   +      +++ +M + GL  P 
Sbjct: 514 CRMRRLKEAEATLRQMIREGLAPDEIIYTSLINGYSLTRQTRNVCRIFDEMLKRGL-QPG 572

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
            H+Y  LI   +  N++         +   G+ P    YTMLI+    K   +      V
Sbjct: 573 PHAYGSLINGLVKGNKIRKALGYLERMLEEGIAPQTVIYTMLINQFFRKGDVRLGLDLVV 632

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWR-RLKKKLDE 283
            M++  + P  +T+  L  G+ ++   R  R  L KKL E
Sbjct: 633 LMMKTNVAPDLITYGALVTGICRNIARRGMRPSLAKKLKE 672



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 138/324 (42%), Gaps = 52/324 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVL--------------------- 40
           YT L+   CK  ++  AE    +M+E G+ P+ V +  +                     
Sbjct: 296 YTILMASLCKDGKLGEAENLFDKMLESGLFPDHVMFISIARFFPKGWVVLFVRKALKAVA 355

Query: 41  -------------LNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 87
                        L G C   SL          + A+ + DE+    +  +V   +IVL+
Sbjct: 356 KLDCGAKLLELSSLAGGCSNMSLQ---------KEADHLLDEI----VTSNVLPVNIVLN 402

Query: 88  VYSRAHQPQLSLDKLNFMKEK----GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
           +   A   +  LD   ++  K    G  P+V TY+ V+KCLC   R++DA  L+  M   
Sbjct: 403 LMIIAMCSEGRLDVSYYLLGKLVAYGCEPSVLTYNIVIKCLCEQNRMDDARALITIMQSR 462

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           GV P   T +     Y    +   A+ L+ +M +DG+  P++  Y+ +I     + R+  
Sbjct: 463 GVRPDMSTNSIMVTAYCKIGEIESALHLFGEMAKDGI-EPSIAVYDSIIVCLCRMRRLKE 521

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
                  +   GL PD   YT LI+G    ++ +  C+ F EM+++GL P    + +L  
Sbjct: 522 AEATLRQMIREGLAPDEIIYTSLINGYSLTRQTRNVCRIFDEMLKRGLQPGPHAYGSLIN 581

Query: 264 GLIQSDMLRTWRRLKKKLDEESIT 287
           GL++ + +R      +++ EE I 
Sbjct: 582 GLVKGNKIRKALGYLERMLEEGIA 605



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 131/321 (40%), Gaps = 48/321 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y S+I   C++ R+  AE  L +MI  G+ P+ + Y  L+NG              +  
Sbjct: 505 VYDSIIVCLCRMRRLKEAEATLRQMIREGLAPDEIIYTSLINGY----------SLTRQT 554

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           RN  ++FDEM  RG++P   ++  +++   + ++ + +L  L  M E+GI P    Y+ +
Sbjct: 555 RNVCRIFDEMLKRGLQPGPHAYGSLINGLVKGNKIRKALGYLERMLEEGIAPQTVIYTML 614

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF------------FKEYRGRKDANGA 168
           +      G +    +L+  M++  V P   TY                +    +K     
Sbjct: 615 INQFFRKGDVRLGLDLVVLMMKTNVAPDLITYGALVTGICRNIARRGMRPSLAKKLKEAR 674

Query: 169 MKLYRQM-----------KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
             L+R +           K++ +C   M               + + + I  D++ +G+ 
Sbjct: 675 YMLFRMLPQIIDTRNGKQKDNQICTEEM---------------IQVAQGIIQDLEENGMV 719

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           PDL  Y  +I+GLC   K  +A      M + G+LP  VT+  L    I+   +    +L
Sbjct: 720 PDLHIYNGMINGLCRANKMDDAYSLLSVMDQTGILPNHVTYTILMNNQIRLGDINHAIQL 779

Query: 278 KKKLDEESITFGSEFQNYHFK 298
              L+ +   F     N   K
Sbjct: 780 FNSLNSDGCVFDKITYNTFIK 800



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 136/330 (41%), Gaps = 70/330 (21%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR---------------RAS 49
           ++  +CKI  I+ A    GEM + G+EP++  Y+ ++  +CR               R  
Sbjct: 474 MVTAYCKIGEIESALHLFGEMAKDGIEPSIAVYDSIIVCLCRMRRLKEAEATLRQMIREG 533

Query: 50  LHPSE----------RFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
           L P E             +  RN  ++FDEM  RG++P   ++  +++   + ++ + +L
Sbjct: 534 LAPDEIIYTSLINGYSLTRQTRNVCRIFDEMLKRGLQPGPHAYGSLINGLVKGNKIRKAL 593

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF---- 155
             L  M E+GI P    Y+ ++      G +    +L+  M++  V P   TY       
Sbjct: 594 GYLERMLEEGIAPQTVIYTMLINQFFRKGDVRLGLDLVVLMMKTNVAPDLITYGALVTGI 653

Query: 156 ----------------FKEYR---------------GRKDANG---------AMKLYRQM 175
                            KE R               G++  N          A  + + +
Sbjct: 654 CRNIARRGMRPSLAKKLKEARYMLFRMLPQIIDTRNGKQKDNQICTEEMIQVAQGIIQDL 713

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           +E+G+ VP++H YN +I      N+MD    + + +  +G+ P+  +YT+L++       
Sbjct: 714 EENGM-VPDLHIYNGMINGLCRANKMDDAYSLLSVMDQTGILPNHVTYTILMNNQIRLGD 772

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
              A Q F  +   G +  K+T+ T  +GL
Sbjct: 773 INHAIQLFNSLNSDGCVFDKITYNTFIKGL 802



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/315 (21%), Positives = 127/315 (40%), Gaps = 55/315 (17%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTSLI G+    +     R   EM++RG++P    Y  L+NG+ +             I
Sbjct: 540 IYTSLINGYSLTRQTRNVCRIFDEMLKRGLQPGPHAYGSLINGLVK----------GNKI 589

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R A    + M   GI P    ++++++ + R    +L LD +  M +  + P + TY ++
Sbjct: 590 RKALGYLERMLEEGIAPQTVIYTMLINQFFRKGDVRLGLDLVVLMMKTNVAPDLITYGAL 649

Query: 121 VKCLC----------SCGR----------------------------------IEDAEEL 136
           V  +C          S  +                                  I+ A+ +
Sbjct: 650 VTGICRNIARRGMRPSLAKKLKEARYMLFRMLPQIIDTRNGKQKDNQICTEEMIQVAQGI 709

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
           + ++  NG+ P    YN            + A  L   M + G+ +PN  +Y IL+   +
Sbjct: 710 IQDLEENGMVPDLHIYNGMINGLCRANKMDDAYSLLSVMDQTGI-LPNHVTYTILMNNQI 768

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
            L  ++   +++N +   G   D  +Y   I GL    + KEA  + + M ++G +P K 
Sbjct: 769 RLGDINHAIQLFNSLNSDGCVFDKITYNTFIKGLSLAGRMKEALSFLLMMHKRGFVPSKA 828

Query: 257 TFETLYRGLIQSDML 271
           +++ L   L+  + +
Sbjct: 829 SYDKLMELLLAENAI 843



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 123/286 (43%), Gaps = 41/286 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR---RASLHPSERFE 57
           +YT LI  + +   + +    +  M++  V P+++TY  L+ G+CR   R  + PS    
Sbjct: 610 IYTMLINQFFRKGDVRLGLDLVVLMMKTNVAPDLITYGALVTGICRNIARRGMRPS--LA 667

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           K ++ A  +   M  + I  D  +     +        Q++   +  ++E G+ P +  Y
Sbjct: 668 KKLKEARYMLFRMLPQII--DTRNGKQKDNQICTEEMIQVAQGIIQDLEENGMVPDLHIY 725

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + ++  LC   +++DA  LL  M + G+ P+  TY           D N A++L+  +  
Sbjct: 726 NGMINGLCRANKMDDAYSLLSVMDQTGILPNHVTYTILMNNQIRLGDINHAIQLFNSLNS 785

Query: 178 DGLC----------------------------------VPNMHSYNILIGMFMALNRMDM 203
           DG                                    VP+  SY+ L+ + +A N +D+
Sbjct: 786 DGCVFDKITYNTFIKGLSLAGRMKEALSFLLMMHKRGFVPSKASYDKLMELLLAENAIDI 845

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
           V +++ D+   G  P   +YT L+  L +  +W EA + F  M++K
Sbjct: 846 VLQLFEDMLFQGYTPRYANYTSLLLVLAKDGRWSEADRIFTMMLKK 891



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 49/264 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR-RASLHPSERFEKTI 60
           +  LI G C    +D A      M+  G+ P V  Y  L    C+ R SL  S+  +   
Sbjct: 120 FALLIPGLCSEGAVDKARFLFDAMLRSGLTPPVRVYRSLAFAYCKARRSLDASDMCQL-- 177

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMK-EKGICPTVATYSS 119
                    M ++G+  D    + ++ V+ R  + + +LD    MK ++ +      Y++
Sbjct: 178 ---------MLIKGMYLDRELSTALIRVFCREGRLEPALDVFRRMKGDEHVQLDAYAYTT 228

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  L   GR++   ++  EM+  G+ P A TYN   + Y   K    AM +Y+      
Sbjct: 229 MIWGLFEHGRVDHGLQMYHEMIDRGIQPDAATYNVMIRWYCKSKWVGAAMDIYKV----- 283

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
                                  M+R        +G+ PDL  YT+L+  LC+  K  EA
Sbjct: 284 -----------------------MIR--------TGVAPDLRCYTILMASLCKDGKLGEA 312

Query: 240 CQYFVEMIEKGLLPQKVTFETLYR 263
              F +M+E GL P  V F ++ R
Sbjct: 313 ENLFDKMLESGLFPDHVMFISIAR 336



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/317 (20%), Positives = 122/317 (38%), Gaps = 60/317 (18%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SL + +CK  R   A      M+ +G+  +      L+   CR   L P+    + +
Sbjct: 154 VYRSLAFAYCKARRSLDASDMCQLMLIKGMYLDRELSTALIRVFCREGRLEPALDVFRRM 213

Query: 61  RNAEKV--------------------------FDEMRVRGIEPDVTSFSIVLHVYSRAHQ 94
           +  E V                          + EM  RGI+PD  ++++++  Y ++  
Sbjct: 214 KGDEHVQLDAYAYTTMIWGLFEHGRVDHGLQMYHEMIDRGIQPDAATYNVMIRWYCKSKW 273

Query: 95  PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP------- 147
              ++D    M   G+ P +  Y+ ++  LC  G++ +AE L  +M+ +G+ P       
Sbjct: 274 VGAAMDIYKVMIRTGVAPDLRCYTILMASLCKDGKLGEAENLFDKMLESGLFPDHVMFIS 333

Query: 148 -------------------SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL----CVPN 184
                              +    +C  K       A G   +  Q + D L       N
Sbjct: 334 IARFFPKGWVVLFVRKALKAVAKLDCGAKLLELSSLAGGCSNMSLQKEADHLLDEIVTSN 393

Query: 185 MHSYNILIG-MFMAL---NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           +   NI++  M +A+    R+D+   +   +   G  P + +Y ++I  LCE+ +  +A 
Sbjct: 394 VLPVNIVLNLMIIAMCSEGRLDVSYYLLGKLVAYGCEPSVLTYNIVIKCLCEQNRMDDAR 453

Query: 241 QYFVEMIEKGLLPQKVT 257
                M  +G+ P   T
Sbjct: 454 ALITIMQSRGVRPDMST 470



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 2/151 (1%)

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           V+ ++ ++  LCS G ++ A  L   M+R+G+ P    Y      Y   + +  A  + +
Sbjct: 117 VSDFALLIPGLCSEGAVDKARFLFDAMLRSGLTPPVRVYRSLAFAYCKARRSLDASDMCQ 176

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS-GLGPDLDSYTMLIHGLCE 232
            M   G+ +    S   LI +F    R++   +++  +KG   +  D  +YT +I GL E
Sbjct: 177 LMLIKGMYLDRELS-TALIRVFCREGRLEPALDVFRRMKGDEHVQLDAYAYTTMIWGLFE 235

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             +     Q + EMI++G+ P   T+  + R
Sbjct: 236 HGRVDHGLQMYHEMIDRGIQPDAATYNVMIR 266


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 140/320 (43%), Gaps = 45/320 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV----------------- 44
           YT+L+  + +  R   A      M++ GV+P +VTYNV+ +                   
Sbjct: 187 YTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVALVDSM 246

Query: 45  ------------------CRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
                             CRR  LH         R A +VFDEM+  G EPD  +F+ +L
Sbjct: 247 KEDGIERDRYTYNTLISCCRRRGLH---------REAAQVFDEMKAAGFEPDKVTFNSLL 297

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
            VY +A + + ++  L  M+  G  P+V TY+S++      G +E+A EL  EM   G+ 
Sbjct: 298 DVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMK 357

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P   TY             + A+  Y +M  +G C PN+ +YN LI +     +   +  
Sbjct: 358 PDVVTYTTLISGLDRVGKIDAALATYSEMVRNG-CSPNLCTYNALIKLHGVRGKFTEMMA 416

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +++D++ +G  PD+ ++  L+    +     E    F EM + G +P++ T+ +L     
Sbjct: 417 VFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYS 476

Query: 267 QSDMLRTWRRLKKKLDEESI 286
           +  +      + K++ E  I
Sbjct: 477 RCGLFDQAMEIYKRMIEAGI 496



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 130/303 (42%), Gaps = 24/303 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI  + +    D A      MIE G+ P++ TYN +L+ + R        R+E+   
Sbjct: 468 YVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGG------RWEQ--- 518

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK+F EM  R  +PD  S+S +LH Y+ A +    LDK+  + E      +  ++ +V
Sbjct: 519 -AEKLFAEMVDRDCKPDELSYSSLLHAYANAKK----LDKMKTLSEDIYAERIERHNWLV 573

Query: 122 KCLC----SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           K L         + + E+   E+ R          N     Y   K      ++   M E
Sbjct: 574 KTLVLVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMME 633

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
           + +   +  +YN L+ M+  L   +    I  ++K SG+ PD  SY  +I+    K + K
Sbjct: 634 NSIN-HSAATYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMK 692

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI-----TFGSEF 292
           EA + F EM   G+ P  VT+    +  + + M      L + L  +       TF S  
Sbjct: 693 EASRLFSEMKCSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSIL 752

Query: 293 QNY 295
           Q Y
Sbjct: 753 QGY 755



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 80/187 (42%), Gaps = 25/187 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVL--LNGV-------------CR 46
           YT+LI G  ++ +ID A     EM+  G  PN+ TYN L  L+GV              R
Sbjct: 363 YTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLR 422

Query: 47  RASLHPSERFEKTI----------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            A   P      T+               VF EM+  G  P+  ++  ++  YSR     
Sbjct: 423 SAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFD 482

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +++    M E GI P ++TY++V+  L   GR E AE+L  EMV     P   +Y+   
Sbjct: 483 QAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLL 542

Query: 157 KEYRGRK 163
             Y   K
Sbjct: 543 HAYANAK 549



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 6/199 (3%)

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
            + V++RA      L + + + E    P  + Y+++V      GR  DA  +   MV  G
Sbjct: 159 AIRVFARAG----CLAEASAILEAAPAPDASAYTALVSAFSRAGRFRDAVAVFQRMVDGG 214

Query: 145 VCPSAETYNCFFKEYRGRKDA-NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           V P+  TYN  F  Y          + L   MKEDG+   + ++YN LI           
Sbjct: 215 VQPALVTYNVVFHAYSKMSVPWKEVVALVDSMKEDGI-ERDRYTYNTLISCCRRRGLHRE 273

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             ++++++K +G  PD  ++  L+    + +K +EA      M   G  P  VT+ +L  
Sbjct: 274 AAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLIS 333

Query: 264 GLIQSDMLRTWRRLKKKLD 282
             ++  +L     LK++++
Sbjct: 334 AYVKDGLLEEALELKQEME 352



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 37/223 (16%)

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC------------- 123
           PD ++++ ++  +SRA + + ++     M + G+ P + TY+ V                
Sbjct: 182 PDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVA 241

Query: 124 -------------------LCSC----GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160
                              L SC    G   +A ++  EM   G  P   T+N     Y 
Sbjct: 242 LVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYG 301

Query: 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
             +    A+ + ++M+  G C P++ +YN LI  ++    ++   E+  +++  G+ PD+
Sbjct: 302 KARKHEEAIGVLKRMENAG-CTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDV 360

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            +YT LI GL    K   A   + EM+  G  P   T+  L +
Sbjct: 361 VTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIK 403



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 99/260 (38%), Gaps = 61/260 (23%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHP--------- 52
           Y +++    +  R + AE+   EM++R  +P+ ++Y+ LL+       L           
Sbjct: 503 YNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDIY 562

Query: 53  SERFEK----------------TIRNAEKVFDEMRVR----------------------- 73
           +ER E+                 +   EK F E+R R                       
Sbjct: 563 AERIERHNWLVKTLVLVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVK 622

Query: 74  ------------GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                        I     +++ ++H+YSR    +     L  +K  G+ P   +Y++V+
Sbjct: 623 KVEEVLSLMMENSINHSAATYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVI 682

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G++++A  L  EM  +GV P   TYN F K Y        A+ L R +   G C
Sbjct: 683 YAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQG-C 741

Query: 182 VPNMHSYNILIGMFMALNRM 201
            PN  ++N ++  +    RM
Sbjct: 742 RPNERTFNSILQGYSRHGRM 761



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 70/139 (50%), Gaps = 10/139 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL++ + ++   +  E  L E+   G+ P+  +YN ++    R+  +          +
Sbjct: 643 YNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQM----------K 692

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F EM+  G++PD+ +++I +  Y      + ++D + ++  +G  P   T++S++
Sbjct: 693 EASRLFSEMKCSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSIL 752

Query: 122 KCLCSCGRIEDAEELLGEM 140
           +     GR+ +A+  L  +
Sbjct: 753 QGYSRHGRMVEAKSFLSNL 771


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 125/263 (47%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + ++I G C+   +D AE     M E GV P+V TY  L+ G+CR             I 
Sbjct: 278 FNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGR----------IE 327

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  VF++M  RG++P+   F+I++  + +    +  L+    M+E+G+ P   TY+++V
Sbjct: 328 DARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIV 387

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    ++ A  ++ EM   G+ P   TY      Y   ++ + AM++ + M  +G+ 
Sbjct: 388 NGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVG 447

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +  + +Y  LI       R      +  ++  +GL PD  +YTM+I   C K   K   +
Sbjct: 448 LDEV-TYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLR 506

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
              EM  KG  P  VT+  +  G
Sbjct: 507 LLKEMQNKGRKPGVVTYNVIMNG 529



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 136/276 (49%), Gaps = 18/276 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++T LI   CK    +       EM ERGV P+ VTYN ++NG+CR           + +
Sbjct: 347 VFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCR----------ARDL 396

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           ++A  +  EMR  G+ PD  +++ ++  Y +  +  ++++    M  +G+     TY+++
Sbjct: 397 KSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTAL 456

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L   GR  DAE +LGEM+  G+ P   TY      +  + D    ++L ++M+  G 
Sbjct: 457 ISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGR 516

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P + +YN+++  F  L +M     + N +   G+ PD  +Y +L+ G C+  K  +  
Sbjct: 517 -KPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTD-- 573

Query: 241 QYFVEMIE--KGLLPQKVTFETLYRGLIQSDMLRTW 274
              +E ++  KG +P    + ++   +++    +T+
Sbjct: 574 ---IEELKSAKGTVPDLGVYTSIVGEIVKKKTTKTY 606



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 132/295 (44%), Gaps = 44/295 (14%)

Query: 21  FLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80
           F  ++++ G+ P    +NVL+  + R   L           +A+ VFDEM+ RG+   V 
Sbjct: 227 FYLQLLDAGLPPEAKLFNVLMRDLVRLGELA----------SAQNVFDEMQSRGVRRTVV 276

Query: 81  SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
           SF+ ++    RA     +      M E G+ P V TY ++++ LC  GRIEDA  +  +M
Sbjct: 277 SFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM 336

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE--------------DGLCV---- 182
              G+ P+A  +      +  + DA   ++L+R+M+E              +GLC     
Sbjct: 337 CGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDL 396

Query: 183 ----------------PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
                           P+  +Y  LI  +     +DM  EI  ++   G+G D  +YT L
Sbjct: 397 KSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTAL 456

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           I GL +  +  +A +   EM+E GL P   T+  +     +   ++T  RL K++
Sbjct: 457 ISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEM 511



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 108/228 (47%), Gaps = 9/228 (3%)

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           RGI  + TS + ++  +  A  P+     L  + + G+ P    ++ +++ L   G +  
Sbjct: 202 RGIRLEPTSCTGLMSRFPTA--PEACAFYLQLL-DAGLPPEAKLFNVLMRDLVRLGELAS 258

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A+ +  EM   GV  +  ++N          D +GA  L+R+M E G+  P++++Y  LI
Sbjct: 259 AQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGV-TPDVYTYGALI 317

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                + R++  R ++  + G G+ P+   +T+LI   C+K   +   +   EM E+G+ 
Sbjct: 318 QGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVR 377

Query: 253 PQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           P  VT+  +  GL ++  L++   +        L  +++T+ +    Y
Sbjct: 378 PDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGY 425


>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 689

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 127/256 (49%), Gaps = 14/256 (5%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G EP + +YN LLN               K     E +F      G+ P++ ++++++ +
Sbjct: 109 GCEPGIRSYNTLLNAFVE----------AKQWVKVESLFAYFETAGVAPNLQTYNVLIKM 158

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
             +  + + +   LN+M ++G  P V +YS+V+  L   G+++DA EL  EM    V P 
Sbjct: 159 SCKKKEFEKARGFLNWMWKEGFKPDVFSYSTVINDLAKTGKLDDALELFDEMSERRVAPD 218

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
              YN     +   KD   AM+L+ ++ ED    PN+ ++NI+I       R+D   +IW
Sbjct: 219 VTCYNILIDGFLKEKDHKMAMQLWDKLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIW 278

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ- 267
           + +K +    DL +Y+ LIHGLC++    +A   F E++E+      VT+ T+  G  + 
Sbjct: 279 DRMKQNEREKDLYTYSSLIHGLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRC 338

Query: 268 ---SDMLRTWRRLKKK 280
               + L  WR ++++
Sbjct: 339 GKIKESLELWRIMEQR 354



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 130/322 (40%), Gaps = 60/322 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           Y+SLI+G C    +D AE    E++ER    +VVTYN +L G CR   +  S    +   
Sbjct: 293 YSSLIHGLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESLELWRIME 352

Query: 60  ----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
                                 I  A  ++  M  +G   D T++ I +H          
Sbjct: 353 QRNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADNTTYGIFIHGLCVNGYVNK 412

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV------------ 145
           +L  +  ++ KG    V  Y+S++ CLC   R+E+A  L+ EM ++GV            
Sbjct: 413 ALGVMQEVESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIG 472

Query: 146 -----------------------CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
                                   P+  +YN              A    ++M E+GL  
Sbjct: 473 GLIRDSRLSDASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLENGL-K 531

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ +Y+IL+G      ++++  E+W+    SGL PD+  + +LIHGLC   K  +A   
Sbjct: 532 PDLKTYSILLGGLCRDRKIELALELWHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAMTV 591

Query: 243 FVEMIEKGLLPQKVTFETLYRG 264
              M  +      VT+ TL  G
Sbjct: 592 MANMEHRNCTANLVTYNTLMEG 613



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 116/232 (50%), Gaps = 11/232 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
            +LI G  + +R+  A   +  M + G  P VV+YN+L+ G+C       +  F K    
Sbjct: 468 NALIGGLIRDSRLSDASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVK---- 523

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
                 EM   G++PD+ ++SI+L    R  + +L+L+  +   + G+ P V  ++ ++ 
Sbjct: 524 ------EMLENGLKPDLKTYSILLGGLCRDRKIELALELWHQFLQSGLEPDVMMHNILIH 577

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LCS G+++DA  ++  M       +  TYN   + Y   +D+N A  ++  M + GL  
Sbjct: 578 GLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGYFKVRDSNRATVIWGYMYKMGL-Q 636

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           P++ SYN ++      +R+    E ++D +  G+ P + ++ +L+  +  ++
Sbjct: 637 PDIISYNTILKGLCLCHRVSYAIEFFDDARNHGIFPTVYTWNILVRAVVNRK 688



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 11/269 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I   CK  R++ A   + EM + GVE N    N L+ G+ R + L           
Sbjct: 432 YASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRL----------S 481

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +   M   G  P V S++I++     A +   +   +  M E G+ P + TYS ++
Sbjct: 482 DASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLENGLKPDLKTYSILL 541

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   +IE A EL  + +++G+ P    +N            + AM +   M+    C
Sbjct: 542 GGLCRDRKIELALELWHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAMTVMANMEHRN-C 600

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+ +YN L+  +  +   +    IW  +   GL PD+ SY  ++ GLC   +   A +
Sbjct: 601 TANLVTYNTLMEGYFKVRDSNRATVIWGYMYKMGLQPDIISYNTILKGLCLCHRVSYAIE 660

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           +F +    G+ P   T+  L R ++   M
Sbjct: 661 FFDDARNHGIFPTVYTWNILVRAVVNRKM 689



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 129/294 (43%), Gaps = 13/294 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I    K  ++D A     EM ER V P+V  YN+L++G  +          EK  +
Sbjct: 187 YSTVINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILIDGFLK----------EKDHK 236

Query: 62  NAEKVFDEM-RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            A +++D++     + P+V + +I++   S+  +    L   + MK+      + TYSS+
Sbjct: 237 MAMQLWDKLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNEREKDLYTYSSL 296

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G ++ AE +  E+V         TYN     +        +++L+R M++   
Sbjct: 297 IHGLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESLELWRIMEQRN- 355

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              N+ SYNILI   +   ++D    IW  +   G   D  +Y + IHGLC      +A 
Sbjct: 356 -SVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADNTTYGIFIHGLCVNGYVNKAL 414

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
               E+  KG       + ++   L +   L     L K++ +  +   S   N
Sbjct: 415 GVMQEVESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCN 468



 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 125/267 (46%), Gaps = 17/267 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI   CK    + A  FL  M + G +P+V +Y+ ++N + +   L           
Sbjct: 152 YNVLIKMSCKKKEFEKARGFLNWMWKEGFKPDVFSYSTVINDLAKTGKLD---------- 201

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL---DKLNFMKEKGICPTVATYS 118
           +A ++FDEM  R + PDVT ++I++  + +    ++++   DKL  +++  + P V T++
Sbjct: 202 DALELFDEMSERRVAPDVTCYNILIDGFLKEKDHKMAMQLWDKL--LEDSSVYPNVKTHN 259

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++  L  CGR++D  ++   M +N       TY+          + + A  ++ ++ E 
Sbjct: 260 IMISGLSKCGRVDDCLKIWDRMKQNEREKDLYTYSSLIHGLCDEGNVDKAESVFNELVER 319

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
              + ++ +YN ++G F    ++    E+W  ++      ++ SY +LI GL E  K  E
Sbjct: 320 KAFI-DVVTYNTMLGGFCRCGKIKESLELWRIMEQRN-SVNIVSYNILIKGLLENGKIDE 377

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGL 265
           A   +  M  KG      T+     GL
Sbjct: 378 ATMIWRLMPAKGYAADNTTYGIFIHGL 404



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 10/124 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+  LI+G C + ++D A   +  M  R    N+VTYN L+ G  +   +  S R     
Sbjct: 571 MHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGYFK---VRDSNR----- 622

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  ++  M   G++PD+ S++ +L      H+   +++  +  +  GI PTV T++ +
Sbjct: 623 --ATVIWGYMYKMGLQPDIISYNTILKGLCLCHRVSYAIEFFDDARNHGIFPTVYTWNIL 680

Query: 121 VKCL 124
           V+ +
Sbjct: 681 VRAV 684



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 73/150 (48%), Gaps = 1/150 (0%)

Query: 139 EMVRNGVCPSAETYN-CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
           E++R+  C   E       K Y      + A+ ++++M+E   C P + SYN L+  F+ 
Sbjct: 67  ELIRSQECKCDEDVALSVIKTYGKNSMPDRALDVFKRMREIFGCEPGIRSYNTLLNAFVE 126

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
             +   V  ++   + +G+ P+L +Y +LI   C+K+++++A  +   M ++G  P   +
Sbjct: 127 AKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLNWMWKEGFKPDVFS 186

Query: 258 FETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           + T+   L ++  L     L  ++ E  + 
Sbjct: 187 YSTVINDLAKTGKLDDALELFDEMSERRVA 216



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 1/145 (0%)

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G  P   +YN     +   K       L+   +  G+  PN+ +YN+LI M       + 
Sbjct: 109 GCEPGIRSYNTLLNAFVEAKQWVKVESLFAYFETAGV-APNLQTYNVLIKMSCKKKEFEK 167

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            R   N +   G  PD+ SY+ +I+ L +  K  +A + F EM E+ + P    +  L  
Sbjct: 168 ARGFLNWMWKEGFKPDVFSYSTVINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILID 227

Query: 264 GLIQSDMLRTWRRLKKKLDEESITF 288
           G ++    +   +L  KL E+S  +
Sbjct: 228 GFLKEKDHKMAMQLWDKLLEDSSVY 252


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 142/321 (44%), Gaps = 52/321 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G CK   +D A+  L +M + G  PNVVTY  L++G+C+    H          
Sbjct: 48  YTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPH---------- 97

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLH---VYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           +A +    M   G EPD+ +++ ++H   + +R     L L +L  M E G  P V TY+
Sbjct: 98  DAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQEL--MIESGRIPDVVTYN 155

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           + +  LC  G+++   E+L EM R G+ P   T+             + A ++++ M E 
Sbjct: 156 TFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLER 215

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH---------- 228
           G CVP+  +Y+I++      NR+D V E+   +  SG      +Y  LIH          
Sbjct: 216 G-CVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIES 274

Query: 229 -------------------------GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
                                     LC   K+  A    + MIE G LP  +++  +  
Sbjct: 275 ASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVID 334

Query: 264 GLIQS-DMLRTWRRLKKKLDE 283
           GL +S ++   W+  +K LD 
Sbjct: 335 GLCKSGNVDDAWKLSRKMLDS 355



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 140/287 (48%), Gaps = 13/287 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGE-MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y SLI+G C  NR+D A   L E MIE G  P+VVTYN  ++G+C+      + + +K +
Sbjct: 118 YNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCK------AGKLDKGL 171

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               ++ +EM   GI PDV +F  ++    +A++   +      M E+G  P   TYS +
Sbjct: 172 ----EMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIM 227

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L    R++  EE+L  MV++G    + TY           D   A   Y Q  E G 
Sbjct: 228 LDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAG- 286

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           CV  ++++N  IG      +  + + I   +  SG  P+L SY  +I GLC+     +A 
Sbjct: 287 CVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAW 346

Query: 241 QYFVEMIEKGLL-PQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +   +M++ G   P  + F TL  G  ++  L   ++L K++  ++I
Sbjct: 347 KLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNI 393



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 122/273 (44%), Gaps = 45/273 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G CK  +   A   L  M   G + +VVTY  L++G+C+   L          
Sbjct: 12  IYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDA-------- 63

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+ +  +M   G  P+V +++ ++    +A +P  ++  +  M   G  P + TY+S+
Sbjct: 64  --AQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSL 121

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   R++DA  +L E+                                  M E G 
Sbjct: 122 IHGLCMANRMDDAGLVLQEL----------------------------------MIESGR 147

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +P++ +YN  I       ++D   E+  ++   G+ PD+ ++  +I GLC+  +  +A 
Sbjct: 148 -IPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAF 206

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT 273
           Q F  M+E+G +P  +T+  +   L +++ L T
Sbjct: 207 QVFKGMLERGCVPDSLTYSIMLDNLSRANRLDT 239



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 4/176 (2%)

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
            A Y++++  LC   +   A ELL  M  NG   S  TY           D + A  L +
Sbjct: 10  AAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQ 69

Query: 174 QMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
           +M + G C PN+ +Y  LI G+  A    D ++ +   ++ SG  PDL +Y  LIHGLC 
Sbjct: 70  KMADAG-CAPNVVTYTALIDGLCKARRPHDAIQTVKRMLR-SGCEPDLVTYNSLIHGLCM 127

Query: 233 KQKWKEACQYFVE-MIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             +  +A     E MIE G +P  VT+ T   GL ++  L     + +++D   I+
Sbjct: 128 ANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIS 183


>gi|357142780|ref|XP_003572691.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Brachypodium distachyon]
          Length = 501

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 131/263 (49%), Gaps = 14/263 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +   ++GWC   RID A   + EM  +G  P+V+TY  +L   C+          +   R
Sbjct: 223 FNIFVHGWCSARRIDEAMWTIEEMKAQGFPPSVITYTTVLEAYCK----------QHNFR 272

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++ D M   G  P+V ++++++   ++ H  + +L   + MK  G  P    Y+S++
Sbjct: 273 MVYEILDSMSSEGCHPNVITYTMIMTSLAKCHMFEEALSVSHRMKSSGCKPDTLFYNSLI 332

Query: 122 KCLCSCGRIEDAEELLG-EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             L   G + +A ++   EM  NGV  S  TYN     +  +     A+ + ++M+    
Sbjct: 333 NLLGKAGHLSEASQVFQVEMPMNGVPRSLATYNTMISVFCYKDLDEDALSVLKEMETQS- 391

Query: 181 CVPNMHSYNILIGMFMA-LNRMDMVREIWNDVKGS-GLGPDLDSYTMLIHGLCEKQKWKE 238
           C P++ +Y  L+ +F++   + D VR + N++     LG DLD+YT+LIHGLC   +   
Sbjct: 392 CKPDLQTYRPLLRLFLSRRGQDDTVRNLLNELMNKHSLGLDLDTYTLLIHGLCRVGETDW 451

Query: 239 ACQYFVEMIEKGLLPQKVTFETL 261
           A + F EM+   ++P+  T E L
Sbjct: 452 AYRLFDEMVGSEIVPRYRTCELL 474



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 13/165 (7%)

Query: 2   YTSLIYGWCKINRIDMAER-FLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y SLI    K   +  A + F  EM   GV  ++ TYN +++  C          ++   
Sbjct: 328 YNSLINLLGKAGHLSEASQVFQVEMPMNGVPRSLATYNTMISVFC----------YKDLD 377

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVY-SRAHQPQLSLDKLN-FMKEKGICPTVATYS 118
            +A  V  EM  +  +PD+ ++  +L ++ SR  Q     + LN  M +  +   + TY+
Sbjct: 378 EDALSVLKEMETQSCKPDLQTYRPLLRLFLSRRGQDDTVRNLLNELMNKHSLGLDLDTYT 437

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163
            ++  LC  G  + A  L  EMV + + P   T      E + +K
Sbjct: 438 LLIHGLCRVGETDWAYRLFDEMVGSEIVPRYRTCELLLSEAQRKK 482



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/172 (20%), Positives = 74/172 (43%), Gaps = 3/172 (1%)

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           D L+ M  +G+  TV   ++ ++ L    R +DA  L  ++   G+  + ET N      
Sbjct: 138 DLLSDMHCRGLV-TVEAAATSIRRLAGARRWKDAVLLFDKLGDMGLERNTETMNVLLDAL 196

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
              K    A K++  +       P+ +++NI +  + +  R+D       ++K  G  P 
Sbjct: 197 CKEKKVEVARKVFLVLSPH--IQPDAYTFNIFVHGWCSARRIDEAMWTIEEMKAQGFPPS 254

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           + +YT ++   C++  ++   +    M  +G  P  +T+  +   L +  M 
Sbjct: 255 VITYTTVLEAYCKQHNFRMVYEILDSMSSEGCHPNVITYTMIMTSLAKCHMF 306


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 139/283 (49%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+C   R D   + L +MI+R + PNVVT++VL++   +          E  +R
Sbjct: 301 YNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVK----------EGKLR 350

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++  EM  RGI P+  +++ ++  + + ++ + ++  ++ M  KG  P + T++ ++
Sbjct: 351 EADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILI 410

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   RI+D  EL  EM   GV  +  TYN   + +        A KL+++M    + 
Sbjct: 411 NGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRV- 469

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SY IL+        ++   EI+  ++ S +  D+  Y ++IHG+C   K  +A  
Sbjct: 470 RPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWD 529

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KG+      +  +   L + D L     L +K+ EE
Sbjct: 530 LFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEE 572



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 137/264 (51%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++   CK  +  +A   L +M ER ++ + V Y+++++G+C+  SL           
Sbjct: 231 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLD---------- 280

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA  +F+EM ++G + D+ +++ ++  +  A +       L  M ++ I P V T+S ++
Sbjct: 281 NAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLI 340

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G++ +A++LL EM++ G+ P+  TYN     +        A+++   M   G C
Sbjct: 341 DSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG-C 399

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ ++NILI  +   NR+D   E++ ++   G+  +  +Y  L+ G C+  K + A +
Sbjct: 400 DPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKK 459

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F EM+ + + P  V+++ L  GL
Sbjct: 460 LFQEMVSRRVRPDIVSYKILLDGL 483



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 142/312 (45%), Gaps = 46/312 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ +L+ G C   R+  A   +  M+E G +P ++T N L+NG+C              +
Sbjct: 160 IFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLC----------LNGKV 209

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A  + D M   G +P+  ++  VL+V  ++ Q  L+++ L  M+E+ I      YS +
Sbjct: 210 SDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSII 269

Query: 121 VKCL-----------------------------------CSCGRIEDAEELLGEMVRNGV 145
           +  L                                   C+ GR +D  +LL +M++  +
Sbjct: 270 IDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKI 329

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P+  T++     +        A +L ++M + G+  PN  +YN LI  F   NR++   
Sbjct: 330 SPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGI-APNTITYNSLIDGFCKENRLEEAI 388

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           ++ + +   G  PD+ ++ +LI+G C+  +  +  + F EM  +G++   VT+ TL +G 
Sbjct: 389 QMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGF 448

Query: 266 IQSDMLRTWRRL 277
            QS  L   ++L
Sbjct: 449 CQSGKLEVAKKL 460



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 141/276 (51%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ LI  + K  ++  A++ L EM++RG+ PN +TYN L++G C+          E  + 
Sbjct: 336 FSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCK----------ENRLE 385

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D M  +G +PD+ +F+I+++ Y +A++    L+    M  +G+     TY+++V
Sbjct: 386 EAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLV 445

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G++E A++L  EMV   V P   +Y           +   A++++ ++++  + 
Sbjct: 446 QGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKME 505

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++  Y I+I      +++D   +++  +   G+  D  +Y ++I  LC K    +A  
Sbjct: 506 L-DIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADI 564

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F +M E+G  P ++T+  L R  +  D   T   L
Sbjct: 565 LFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAEL 600



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 11/229 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI G+CK NRID       EM  RGV  N VTYN L+ G C+   L           
Sbjct: 406 FNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEV--------- 456

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+K+F EM  R + PD+ S+ I+L       + + +L+    +++  +   +  Y  ++
Sbjct: 457 -AKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIII 515

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C+  +++DA +L   +   GV   A  YN    E   +   + A  L+R+M E+G  
Sbjct: 516 HGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGH- 574

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
            P+  +YNILI   +  +      E+  ++K SG   D+ +  M+I+ L
Sbjct: 575 APDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINML 623



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 128/286 (44%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L     K  + ++      +M  +G+  ++ T ++++N  CR           + + 
Sbjct: 91  FNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRC----------RKLS 140

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A     ++   G EPD   F+ +L+      +   +L+ ++ M E G  PT+ T +++V
Sbjct: 141 YAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLV 200

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++ DA  L+  MV  G  P+  TY               AM+L R+M+E  + 
Sbjct: 201 NGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIK 260

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +  +  Y+I+I        +D    ++N+++  G   D+ +Y  LI G C   +W +  +
Sbjct: 261 LDAVK-YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAK 319

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              +MI++ + P  VTF  L    ++   LR   +L K++ +  I 
Sbjct: 320 LLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIA 365



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 107/273 (39%), Gaps = 39/273 (14%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +F +M      P V  F+ +    ++  Q +L L     M+ KGI  ++ T S ++
Sbjct: 71  DAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMI 130

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
            C C C ++  A   +G++++ G  P    +N            + A++L  +M E    
Sbjct: 131 NCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHK 190

Query: 178 ----------DGLCV--------------------PNMHSYNILIGMFMALNRMDMVREI 207
                     +GLC+                    PN  +Y  ++ +     +  +  E+
Sbjct: 191 PTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMEL 250

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              ++   +  D   Y+++I GLC+      A   F EM  KG     +T+ TL  G   
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCN 310

Query: 268 S----DMLRTWRR-LKKKLDEESITFGSEFQNY 295
           +    D  +  R  +K+K+    +TF     ++
Sbjct: 311 AGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSF 343



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 10/126 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  +I+G C  +++D A      +  +GV+ +   YN++++ +CR+ SL          
Sbjct: 510 IYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLS--------- 560

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+ +F +M   G  PD  +++I++  +        + + +  MK  G    V+T   V
Sbjct: 561 -KADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMV 619

Query: 121 VKCLCS 126
           +  L S
Sbjct: 620 INMLSS 625


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 136/264 (51%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I   C+   ID A     EM  +G++ +VVTYN L+ G+C+    +      K   
Sbjct: 231 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLK--- 287

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                  +M  R I P+V +F+++L V+ +  + Q + +    M  +GI P + TY++++
Sbjct: 288 -------DMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLM 340

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R+ +A  +L  MVRN   P   T+    K Y   K  +  MK++R + + GL 
Sbjct: 341 DGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGL- 399

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V N  +Y+IL+  F    ++ +  E++ ++   G+ PD+ +Y +L+ GLC+  K ++A +
Sbjct: 400 VANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALE 459

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F ++ +  +    V + T+  G+
Sbjct: 460 IFEDLQKSKMDLGIVMYTTIIEGM 483



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 141/288 (48%), Gaps = 15/288 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G     ++  A   +  M+E G +P+VVTYN ++NG+CR               
Sbjct: 161 FNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSL--------- 211

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +M  R ++ DV ++S ++    R      ++     M+ KGI  +V TY+S+V
Sbjct: 212 -ALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLV 270

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  G+  D   LL +MV   + P+  T+N     +        A +LY++M   G+ 
Sbjct: 271 RGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGIS 330

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN L+  +   NR+     + + +  +   PD+ ++T LI G C  ++  +  +
Sbjct: 331 -PNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMK 389

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
            F  + ++GL+   VT+  L +G  QS  +    +L ++L +E ++ G
Sbjct: 390 VFRNISKRGLVANAVTYSILVQGFCQSGKI----KLAEELFQEMVSHG 433



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 145/283 (51%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+ G CK  + +     L +M+ R + PNV+T+NVLL+   +          E  ++
Sbjct: 266 YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK----------EGKLQ 315

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +++ EM  RGI P++ +++ ++  Y   ++   + + L+ M      P + T++S++
Sbjct: 316 EANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLI 375

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R++D  ++   + + G+  +A TY+   + +        A +L+++M   G+ 
Sbjct: 376 KGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV- 434

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ +Y IL+       +++   EI+ D++ S +   +  YT +I G+C+  K ++A  
Sbjct: 435 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWN 494

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KG+ P  +T+  +  GL +   L     L +K++E+
Sbjct: 495 LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEED 537



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 145/297 (48%), Gaps = 18/297 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +I  +C+  +   A   LG++++ G EP+  T+N L+ G+            E  +  A 
Sbjct: 129 MINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGL----------FLEGKVSEAV 178

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            + D M   G +PDV +++ +++   R+    L+LD L  M+E+ +   V TYS+++  L
Sbjct: 179 VLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSL 238

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY-RGRKDANGAMKLYRQMKEDGLCVP 183
           C  G I+ A  L  EM   G+  S  TYN   +   +  K  +GA+ L   +  +   VP
Sbjct: 239 CRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE--IVP 296

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N+ ++N+L+ +F+   ++    E++ ++   G+ P++ +Y  L+ G C + +  EA    
Sbjct: 297 NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 356

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLKKK-LDEESITFGSEFQNY 295
             M+     P  VTF +L +G        D ++ +R + K+ L   ++T+    Q +
Sbjct: 357 DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGF 413



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 126/279 (45%), Gaps = 17/279 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+  + K  ++  A     EMI RG+ PN++TYN L++G C +  L           
Sbjct: 301 FNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSE--------- 351

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D M      PD+ +F+ ++  Y    +    +     + ++G+     TYS +V
Sbjct: 352 -ANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILV 410

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G+I+ AEEL  EMV +GV P   TY               A++++  +++  + 
Sbjct: 411 QGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 470

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWN---DVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           +  +    I+ GM     +   V + WN    +   G+ P++ +YT++I GLC+K    E
Sbjct: 471 LGIVMYTTIIEGMC----KGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE 526

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A     +M E G  P   T+ TL R  ++   L    +L
Sbjct: 527 ANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKL 565



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 112/229 (48%), Gaps = 11/229 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSLI G+C + R+D   +    + +RG+  N VTY++L+ G C+             I+
Sbjct: 371 FTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGK----------IK 420

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE++F EM   G+ PDV ++ I+L       + + +L+    +++  +   +  Y++++
Sbjct: 421 LAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTII 480

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + +C  G++EDA  L   +   GV P+  TY         +   + A  L R+M+EDG  
Sbjct: 481 EGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG-N 539

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
            PN  +YN LI   +    +    ++  ++K  G   D  S  M+I  L
Sbjct: 540 APNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 588



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 98/196 (50%), Gaps = 11/196 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L+ G+C+  +I +AE    EM+  GV P+V+TY +LL+G+C    L           
Sbjct: 406 YSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEK--------- 456

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F++++   ++  +  ++ ++    +  + + + +    +  KG+ P V TY+ ++
Sbjct: 457 -ALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMI 515

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G + +A  LL +M  +G  P+  TYN   + +    D   + KL  +MK  G  
Sbjct: 516 SGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFS 575

Query: 182 VPNMHSYNILIGMFMA 197
             +  S  ++I M ++
Sbjct: 576 -ADASSIKMVIDMLLS 590



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 122/272 (44%), Gaps = 11/272 (4%)

Query: 16  DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI 75
           D A     EMI     P++V ++   + + R    +    F K          ++ + GI
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCK----------QLELNGI 119

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
             ++ + +I+++ + R  +   +   L  + + G  P   T+++++K L   G++ +A  
Sbjct: 120 AHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVV 179

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           L+  MV NG  P   TYN          D + A+ L R+M+E  +   ++ +Y+ +I   
Sbjct: 180 LVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNV-KADVFTYSTIIDSL 238

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
                +D    ++ +++  G+   + +Y  L+ GLC+  KW +      +M+ + ++P  
Sbjct: 239 CRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNV 298

Query: 256 VTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +TF  L    ++   L+    L K++    I+
Sbjct: 299 ITFNVLLDVFVKEGKLQEANELYKEMITRGIS 330



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 10/126 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT++I G CK  +++ A      +  +GV+PNV+TY V+++G+C++ SL          
Sbjct: 475 MYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE-------- 526

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +  +M   G  P+  +++ ++  + R      S   +  MK  G     ++   V
Sbjct: 527 --ANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMV 584

Query: 121 VKCLCS 126
           +  L S
Sbjct: 585 IDMLLS 590


>gi|356551785|ref|XP_003544254.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g09900-like [Glycine max]
          Length = 603

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 130/265 (49%), Gaps = 18/265 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI   CK +R+  A + L EM+ +  +PNVVTYN L+ G+C    L    RF K + 
Sbjct: 263 YTELIDAACKDSRVGQAMKLLIEMVSKECKPNVVTYNALIKGICNEGRLDEVIRFLKNLP 322

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +           G +PDV S++IVLH  S   +   ++  L  M  KG    V T+++++
Sbjct: 323 S----------YGYQPDVISYTIVLHSLSSGGRWTDAMKLLASMLCKGCSLNVVTFNTLI 372

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             LC  G +  A  +L EM+   VC P++ +YN     +   K        Y ++     
Sbjct: 373 NFLCQKGLLGKAFNVL-EMIXKHVCTPNSISYNPSIGGFCNEKSX------YLEIMVSRG 425

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P++ +YNIL+       ++D   EI   +   GL PD+ +Y+++I GL +  K   A 
Sbjct: 426 CYPDIVTYNILLAALCKDRKVDDAVEILKQLSFKGLKPDVITYSIIIDGLLKVGKTDLAL 485

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
           +   E   KGL P  +TF ++  G+
Sbjct: 486 ELLEEACTKGLKPNLITFTSVVGGI 510



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 114/271 (42%), Gaps = 24/271 (8%)

Query: 11  KINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           K   +D A RFL  M  +G + P V+    L++  C+              +NA ++   
Sbjct: 125 KNGELDEASRFLEYMTNKGNIMPCVIACTALISEFCKIGR----------TKNATRIMGI 174

Query: 70  MRVRGIEPDVTSFS---------IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           +   G   D+T ++         +++  Y  + + + +L  L+ M    + P    Y ++
Sbjct: 175 LEESGAVIDITIYNFFCLPKKNNVLIGGYCXSGEVEEALRVLDCMS---VSPNGINYDTI 231

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++ LC   +++   E+L   ++    P   TY               AMKL  +M     
Sbjct: 232 LRSLCDRCKLKQGMEVLDRQLQIKCYPDVVTYTELIDAACKDSRVGQAMKLLIEMVSKE- 290

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN+ +YN LI       R+D V     ++   G  PD+ SYT+++H L    +W +A 
Sbjct: 291 CKPNVVTYNALIKGICNEGRLDEVIRFLKNLPSYGYQPDVISYTIVLHSLSSGGRWTDAM 350

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           +    M+ KG     VTF TL   L Q  +L
Sbjct: 351 KLLASMLCKGCSLNVVTFNTLINFLCQKGLL 381



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 120/269 (44%), Gaps = 32/269 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +++      R   A + L  M+ +G   NVVT+N L+N +C++  L  +    + I 
Sbjct: 333 YTIVLHSLSSGGRWTDAMKLLASMLCKGCSLNVVTFNTLINFLCQKGLLGKAFNVLEMIX 392

Query: 62  -------------------NAEKVFDEMRV-RGIEPDVTSFSIVLHVYSRAHQPQLSLDK 101
                              N +  + E+ V RG  PD+ +++I+L    +  +   +++ 
Sbjct: 393 KHVCTPNSISYNPSIGGFCNEKSXYLEIMVSRGCYPDIVTYNILLAALCKDRKVDDAVEI 452

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
           L  +  KG+ P V TYS ++  L   G+ + A ELL E    G+ P+  T+         
Sbjct: 453 LKQLSFKGLKPDVITYSIIIDGLLKVGKTDLALELLEEACTKGLKPNLITFTSVVGGISR 512

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
           +   + A+K++  ++  G+  PN  +YN++I   M L +              G  P   
Sbjct: 513 KGKVHEAIKIFHFLEGLGI-RPNAFAYNLII---MGLCKTQQTSR--------GCKPTEA 560

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           +Y +L+ G+  +   KEA + + E+  KG
Sbjct: 561 TYNILVKGITSEGXPKEASKLWSELYSKG 589



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 101/259 (38%), Gaps = 28/259 (10%)

Query: 54  ERFEKTIRNAEKVFDEMRVRGIEPDVT---SFSIVLHVYSRAHQPQLSLDKLNFMKEKG- 109
           +RFE+  + A    +     G+   +    S    LHV  +  +   +   L +M  KG 
Sbjct: 85  QRFERLPKGALNGVESSSANGVNTSLNFEESEIHHLHVLIKNGELDEASRFLEYMTNKGN 144

Query: 110 ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF---------FKEYR 160
           I P V   ++++   C  GR ++A  ++G +  +G       YN F            Y 
Sbjct: 145 IMPCVIACTALISEFCKIGRTKNATRIMGILEESGAVIDITIYNFFCLPKKNNVLIGGYC 204

Query: 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
              +   A+++   M       PN  +Y+ ++       ++    E+ +        PD+
Sbjct: 205 XSGEVEEALRVLDCMSVS----PNGINYDTILRSLCDRCKLKQGMEVLDRQLQIKCYPDV 260

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK 280
            +YT LI   C+  +  +A +  +EM+ K   P  VT+  L +G+     L         
Sbjct: 261 VTYTELIDAACKDSRVGQAMKLLIEMVSKECKPNVVTYNALIKGICNEGRL--------- 311

Query: 281 LDEESITFGSEFQNYHFKP 299
             +E I F     +Y ++P
Sbjct: 312 --DEVIRFLKNLPSYGYQP 328


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 149/343 (43%), Gaps = 61/343 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL-HPSERFEKTI 60
           +TSL+ G+C  NRI+ A     +++  G +PNVVTY  L+  +C+   L H  E F +  
Sbjct: 156 FTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMG 215

Query: 61  RNAEK------------------------VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            N  +                        +  +M  R IEP+V +F+ ++  + +  +  
Sbjct: 216 TNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLM 275

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + +  N M +  + P V TY S++  LC  G +++A ++   M RNG  P+   Y    
Sbjct: 276 EAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLI 335

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +   K     MK++ +M + G+ V N  +Y +LI  +  + R D+ +E++N +     
Sbjct: 336 HGFCKSKRVEDGMKIFYEMSQKGV-VANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRA 394

Query: 217 GPDLD-----------------------------------SYTMLIHGLCEKQKWKEACQ 241
            PD+                                    +YT++I G+C+  K ++A  
Sbjct: 395 PPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFD 454

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            F  +  KG+ P  +T+ T+  G  +  ++     L KK+ E+
Sbjct: 455 LFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKED 497



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 139/299 (46%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T L+    K+NR D+      +M   G+ P + T N++++ VC   S  P         
Sbjct: 86  FTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVC--LSSQPCR------- 136

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A     +M   G EPD+ +F+ +L+ Y   ++ + ++   + +   G  P V TY++++
Sbjct: 137 -ASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLI 195

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +CLC    +  A EL  +M  NG  P+  TYN              A  L R M +  + 
Sbjct: 196 RCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRI- 254

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ ++  LI  F+ + ++   +E++N +    + PD+ +Y  LI+GLC      EA Q
Sbjct: 255 EPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQ 314

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKKK-LDEESITFGSEFQNY 295
            F  M   G  P +V + TL  G  +S    D ++ +  + +K +   +IT+    Q Y
Sbjct: 315 MFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGY 373



 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 121/258 (46%), Gaps = 11/258 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI  + K+ ++  A+     MI+  V P+V TY  L+NG+C    L           
Sbjct: 261 FTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLD---------- 310

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F  M   G  P+   ++ ++H + ++ + +  +     M +KG+     TY+ ++
Sbjct: 311 EARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLI 370

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  GR + A+E+  +M      P   TYN              A+ ++  M++  + 
Sbjct: 371 QGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMD 430

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N+ +Y I+I     L +++   +++  +   G+ P++ +YT +I G C +    EA  
Sbjct: 431 I-NIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADS 489

Query: 242 YFVEMIEKGLLPQKVTFE 259
            F +M E G LP +  ++
Sbjct: 490 LFKKMKEDGFLPNESVYK 507



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 100/188 (53%), Gaps = 11/188 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+LI+G+CK  R++   +   EM ++GV  N +TY VL+ G C      P        
Sbjct: 330 IYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVG--RPDV------ 381

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A++VF++M  R   PD+ +++++L       + + +L    +M+++ +   + TY+ +
Sbjct: 382 --AQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTII 439

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++ +C  G++EDA +L   +   G+ P+  TY      +  R   + A  L+++MKEDG 
Sbjct: 440 IQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGF 499

Query: 181 CVPNMHSY 188
            +PN   Y
Sbjct: 500 -LPNESVY 506



 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 12/134 (8%)

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
           N A+ L+ +M      +P++  +  L+ +   +NR D+V  ++  ++  G+ P L +  +
Sbjct: 65  NDALDLFTRMVHSRP-LPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNI 123

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           ++H +C   +   A  +  +M++ G  P  VTF +L  G         W R+     E++
Sbjct: 124 VMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCH------WNRI-----EDA 172

Query: 286 ITFGSEFQNYHFKP 299
           I    +     FKP
Sbjct: 173 IALFDQILGMGFKP 186


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 137/265 (51%), Gaps = 12/265 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +++G+CK  R++ A  F+ EM  + G  P+  T+N L+NG+C+             +++A
Sbjct: 265 IVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGH----------VKHA 314

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            ++ D M   G +PDV +++ V+    +  + + +++ L+ M  +   P   TY++++  
Sbjct: 315 IEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLIST 374

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC   ++E+A EL   +   G+ P   T+N   +     ++   AM+L+ +M+  G C P
Sbjct: 375 LCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKG-CEP 433

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           +  +YN+LI    +  ++D    +   ++ SG    + +Y  LI G C+  K +EA + F
Sbjct: 434 DEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIF 493

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQS 268
            EM   G+    VT+ TL  GL +S
Sbjct: 494 DEMEVHGVSRNSVTYNTLIDGLCKS 518



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 141/325 (43%), Gaps = 62/325 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI- 60
           Y S+I G CK+  +  A  FL +MI R   PN VTYN L++ +C+   +  +    + + 
Sbjct: 333 YNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392

Query: 61  ------------------------RNAEKVFDEMRVRGIEPD------------------ 78
                                   R A ++F+EMR +G EPD                  
Sbjct: 393 SKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLD 452

Query: 79  -----------------VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                            V +++ ++  + +A++ + + +  + M+  G+     TY++++
Sbjct: 453 EALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLI 512

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R+EDA +L+ +M+  G  P   TYN     +    D   A  + + M  +G C
Sbjct: 513 DGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNG-C 571

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  LI       R+++  ++   ++  G+     +Y  +I GL  K+K  EA  
Sbjct: 572 EPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAIN 631

Query: 242 YFVEMIEKG-LLPQKVTFETLYRGL 265
            F EM+E+    P  V++  ++RGL
Sbjct: 632 LFREMLEQNEAAPDAVSYRIVFRGL 656



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 131/292 (44%), Gaps = 50/292 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK N+I  AE    EM   GV  N VTYN L++G+C+           + + 
Sbjct: 473 YNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK----------SRRVE 522

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++ D+M + G +PD  +++ +L  + R    + + D +  M   G  P + TY +++
Sbjct: 523 DASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLI 582

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+E A +LL  +   G+  +   YN   +    ++    A+ L+R+M E    
Sbjct: 583 SGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEA 642

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  SY I+             R + N     G GP                  +EA  
Sbjct: 643 APDAVSYRIVF------------RGLCN-----GGGP-----------------IREAVD 668

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL------KKKLDEESIT 287
           + VE++EKG +P+  +   L  GL+   M  T  +L      K +  EE ++
Sbjct: 669 FLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQKARFSEEEVS 720



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 139/289 (48%), Gaps = 10/289 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+++ G+ +   +D A R   +M+E G   + V+ NV+++G C+   +  +  F + + 
Sbjct: 227 FTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMS 286

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N +  F         PD  +F+ +++   +A   + +++ ++ M ++G  P V TY+SV+
Sbjct: 287 NQDGFF---------PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVI 337

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +++A E L +M+     P+  TYN              A +L R +   G+ 
Sbjct: 338 SGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGI- 396

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ ++N LI          +  E++ +++  G  PD  +Y MLI  LC K K  EA  
Sbjct: 397 LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALN 456

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
              +M   G     +T+ TL  G  +++ +R    +  +++   ++  S
Sbjct: 457 MLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNS 505



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 131/299 (43%), Gaps = 33/299 (11%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF------------EKT- 59
           N + + E    +M   G++P+V T+NVL+  +CR   L P+               EKT 
Sbjct: 168 NNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTF 227

Query: 60  ------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE 107
                       +  A ++ ++M   G      S ++++H + +  + +   D LNF++E
Sbjct: 228 TTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVE---DALNFIQE 284

Query: 108 ----KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163
                G  P   T++++V  LC  G ++ A E++  M++ G  P   TYN          
Sbjct: 285 MSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLG 344

Query: 164 DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSY 223
           +   A++   QM     C PN  +YN LI      N+++   E+   +   G+ PD+ ++
Sbjct: 345 EVKEAVEFLDQMITRD-CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTF 403

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
             LI GLC  +  + A + F EM  KG  P + T+  L   L     L     + K+++
Sbjct: 404 NSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQME 462



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 122/270 (45%), Gaps = 15/270 (5%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G++P+   YN +LN +    +L          +  E    +M V GI+PDV++F++++  
Sbjct: 149 GLKPDTHFYNRMLNLLVDGNNL----------KLVEIAHAKMSVWGIKPDVSTFNVLIKA 198

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
             RAHQ + ++  L  M   G+ P   T++++++     G ++ A  +  +MV  G   S
Sbjct: 199 LCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWS 258

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             + N     +        A+   ++M       P+ +++N L+        +    EI 
Sbjct: 259 NVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIM 318

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           + +   G  PD+ +Y  +I GLC+  + KEA ++  +MI +   P  VT+ TL   L + 
Sbjct: 319 DVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKE 378

Query: 269 DMLRTWRRLKKKLDEESI-----TFGSEFQ 293
           + +     L + L  + I     TF S  Q
Sbjct: 379 NQVEEATELARVLTSKGILPDVCTFNSLIQ 408



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 4/189 (2%)

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
           K+    P  A Y  ++  L   G  +D  ++L +M  +G       +    + Y   +  
Sbjct: 75  KKPNFSPEPALYEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTSPFLILIESYAQFELQ 134

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
           +  + +   M +D    P+ H YN ++ + +  N + +V      +   G+ PD+ ++ +
Sbjct: 135 DEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNV 194

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           LI  LC   + + A     +M   GL+P + TF T+ +G I+   L    R++    E+ 
Sbjct: 195 LIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIR----EQM 250

Query: 286 ITFGSEFQN 294
           + FG  + N
Sbjct: 251 VEFGCSWSN 259


>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
          Length = 912

 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 128/265 (48%), Gaps = 12/265 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+CK   ++ A +++ EM+ R  EPNV+TYN ++ G+C              + 
Sbjct: 324 YTTLIDGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLC----------LNGNVD 373

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++   MR+ G++ +V + + +L       +   +   L  M   G+      Y  VV
Sbjct: 374 EAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVV 433

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+ +DA  LL EM   G+ PS  ++N  F+        + A  + RQMK+ G C
Sbjct: 434 NEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQLG-C 492

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            PN  SY+ +I G+  A  RM  V E  +D+  +G   D   Y+ L+ G CE      A 
Sbjct: 493 TPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNGHHLDASMYSWLVKGYCEDGNADMAM 552

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
           + F EM++ G +    +F    +GL
Sbjct: 553 RLFCEMLDMGYVINLESFLAFVKGL 577



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 134/269 (49%), Gaps = 16/269 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGV-EPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y +++  + K NRI +A     ++++ GV +P+V TY  ++ G C+             I
Sbjct: 220 YNAILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMG----------MI 269

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSS 119
            NA+ VFDEM   G +P++ +++ +++ + +    + ++  ++ M E   C P   TY++
Sbjct: 270 ENAKNVFDEM---GCKPNLVTYNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTT 326

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++   C  G +E+A + + EMV     P+  TYN          + + A ++  +M+ +G
Sbjct: 327 LIDGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNG 386

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           L   N+ ++  ++     + ++D       ++ G G+  D  +Y ++++  C+  K  +A
Sbjct: 387 L-KDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDA 445

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
                EM  +G+ P   +F  ++R L++S
Sbjct: 446 ISLLKEMKSRGINPSVSSFNAVFRILVES 474



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 90/186 (48%), Gaps = 4/186 (2%)

Query: 81  SFSIVLHVYSRAHQPQLSLDKLN-FMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
           S++ +L V+ +A++  L+    +  +KE  + P V+TY+++++  C  G IE+A+ +  E
Sbjct: 219 SYNAILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNVFDE 278

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
           M   G  P+  TYN     +  +     AMK+  QM E   C+P+  +Y  LI  +    
Sbjct: 279 M---GCKPNLVTYNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCKRG 335

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
            ++   +   ++      P++ +Y  +I+GLC      EA +    M   GL     T  
Sbjct: 336 ELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHT 395

Query: 260 TLYRGL 265
           ++ +GL
Sbjct: 396 SILKGL 401



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 82/177 (46%), Gaps = 8/177 (4%)

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC-PSAETYNCFFKEYRGRKDA 165
           E G C  + +Y++++       RI  A  +  ++V+ GV  P   TY    + Y      
Sbjct: 212 ESGRC--LFSYNAILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMI 269

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS-GLGPDLDSYT 224
             A  ++ +M     C PN+ +YN +I  F     M+   +I + +  +    PD  +YT
Sbjct: 270 ENAKNVFDEMG----CKPNLVTYNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYT 325

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            LI G C++ + +EA +Y  EM+ +   P  +T+  +  GL  +  +   +R+  ++
Sbjct: 326 TLIDGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRM 382


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 134/292 (45%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI  +     ID A + L EM+ RG+EP+  TYNV+  G+C+   +  +  F +T+ 
Sbjct: 118 YTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLN 177

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +                          EK   E+  RG EP+V ++SI++    R  + +
Sbjct: 178 SRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIE 237

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            S++ +  MKEKG+ P    Y  ++   C  G+++ A E L  M+ +G  P    YN   
Sbjct: 238 ESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIM 297

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                  + + A++++ ++ E G C PN+ SYN ++    +         + + +   G+
Sbjct: 298 AALCKNGNGDHAVEIFGKLDEVG-CPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGI 356

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            PD+ +Y  LI  LC      EA     +M+     P  V+++T+  GL ++
Sbjct: 357 DPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKA 408



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 146/320 (45%), Gaps = 32/320 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           Y ++I G+CK NRI+ A+  L  M  +G  P+VVT+N+++   C +  +  + +      
Sbjct: 47  YNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELL 106

Query: 56  --------------------FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                E  I  A K+ DEM  RG+EPD  +++++     +  + 
Sbjct: 107 KDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKV 166

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             + + +  +  +G  P V TY+ +++ L + G+ ++ E+ + E+   G  P+  TY+  
Sbjct: 167 DRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSIL 226

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                       ++ L + MKE GL  P+ + Y+ LI  F    ++DM  E  + +   G
Sbjct: 227 ISSLCRDGKIEESVNLVKVMKEKGL-TPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDG 285

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS-DMLRTW 274
             PD+ +Y  ++  LC+      A + F ++ E G  P   ++ T+   L  S D  R  
Sbjct: 286 FLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRAL 345

Query: 275 ----RRLKKKLDEESITFGS 290
               + L K +D + IT+ S
Sbjct: 346 GMISQMLSKGIDPDVITYNS 365



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 123/264 (46%), Gaps = 13/264 (4%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M+ +  +P+V+    L+ G              + I  A +V   +   G +PDV +++ 
Sbjct: 1   MVAKDYQPDVILCTKLIKGFFN----------SRNIDKATRVMGILEKHG-KPDVFAYNA 49

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           V+  + +A++ + +   L+ MK KG  P V T++ ++   C  G+I+ A ++  E++++ 
Sbjct: 50  VISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDN 109

Query: 145 VC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
            C P+  TY    + Y      + A+KL  +M   GL  P+  +YN++        ++D 
Sbjct: 110 NCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGL-EPDTFTYNVITRGLCKEGKVDR 168

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             E    +   G  PD+ +Y +L+  L  + KW E  ++  E+  +G  P  VT+  L  
Sbjct: 169 AFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILIS 228

Query: 264 GLIQSDMLRTWRRLKKKLDEESIT 287
            L +   +     L K + E+ +T
Sbjct: 229 SLCRDGKIEESVNLVKVMKEKGLT 252



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 25/199 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL-HPSERFEKTI 60
           Y  LI  +C+  ++DMA  FL  MI  G  P++V YN ++  +C+  +  H  E F K  
Sbjct: 258 YDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLD 317

Query: 61  R------------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     A  +  +M  +GI+PDV +++ ++    R     
Sbjct: 318 EVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVD 377

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++  L  M      P + +Y +V+  LC   RI+DA E+L  M+ NG  P+  TY    
Sbjct: 378 EAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLI 437

Query: 157 KEYRGRKDANGAMKLYRQM 175
           +          AM+L   +
Sbjct: 438 EGIGFSGSRTQAMELANSL 456


>gi|224123682|ref|XP_002319140.1| predicted protein [Populus trichocarpa]
 gi|222857516|gb|EEE95063.1| predicted protein [Populus trichocarpa]
          Length = 296

 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 131/250 (52%), Gaps = 24/250 (9%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M +RG+  +VV+Y  +++   +  SL+             +++ +M+  GIEPD   ++ 
Sbjct: 1   MSKRGIRFDVVSYASMMSCYSKAGSLY----------RVLRLYKQMKKIGIEPDRKVYNA 50

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           V+H  ++      + + +  M+EKG+ P + TY+S++K LC   ++E+A+    +M++  
Sbjct: 51  VIHALAKGRLVNEAFNLMKTMEEKGVAPNIVTYNSLIKPLCRARKVEEAKGAFDDMLKRC 110

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           + P+  TY+ F +  R  ++    ++  R+M     C P   +Y +LI  F    +++ V
Sbjct: 111 ISPTIRTYHAFLRILRTGEEVFALLEKMRKMG----CQPINDTYIMLIRKFCRWRQLENV 166

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            ++W+++  +G+ PD  SY +LIHGL    +   A +Y+ EM EK LLP+    E     
Sbjct: 167 FKLWDEMSENGISPDRSSYIVLIHGLFLNGELDAAHKYYTEMKEKQLLPEPKIDE----- 221

Query: 265 LIQSDMLRTW 274
                ML+TW
Sbjct: 222 -----MLQTW 226



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 13/180 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I+   K   ++ A   +  M E+GV PN+VTYN L+  +CR           + +
Sbjct: 47  VYNAVIHALAKGRLVNEAFNLMKTMEEKGVAPNIVTYNSLIKPLCR----------ARKV 96

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+  FD+M  R I P + ++   L +     +    L+K   M++ G  P   TY  +
Sbjct: 97  EEAKGAFDDMLKRCISPTIRTYHAFLRILRTGEEVFALLEK---MRKMGCQPINDTYIML 153

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C   ++E+  +L  EM  NG+ P   +Y           + + A K Y +MKE  L
Sbjct: 154 IRKFCRWRQLENVFKLWDEMSENGISPDRSSYIVLIHGLFLNGELDAAHKYYTEMKEKQL 213



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 110/234 (47%), Gaps = 16/234 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S++  + K   +    R   +M + G+EP+   YN +++ + +           + + 
Sbjct: 13  YASMMSCYSKAGSLYRVLRLYKQMKKIGIEPDRKVYNAVIHALAK----------GRLVN 62

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M  +G+ P++ +++ ++    RA + + +    + M ++ I PT+ TY + +
Sbjct: 63  EAFNLMKTMEEKGVAPNIVTYNSLIKPLCRARKVEEAKGAFDDMLKRCISPTIRTYHAFL 122

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + L +    E+   LL +M + G  P  +TY    +++   +      KL+ +M E+G+ 
Sbjct: 123 RILRTG---EEVFALLEKMRKMGCQPINDTYIMLIRKFCRWRQLENVFKLWDEMSENGIS 179

Query: 182 VPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
            P+  SY +LI G+F+    +D   + + ++K   L P+     ML   L  KQ
Sbjct: 180 -PDRSSYIVLIHGLFLN-GELDAAHKYYTEMKEKQLLPEPKIDEMLQTWLSNKQ 231


>gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 558

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 139/281 (49%), Gaps = 11/281 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L++GWC+    D A + + +M E G EP+V +Y   +               E+  R
Sbjct: 268 FNVLMHGWCRARDFDNARKAMEDMKEHGFEPDVFSYTNFIEAYGH----------ERDFR 317

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             ++V +EMR  G  P+  +++ V+    +A Q + +L+    MK  G       YSS++
Sbjct: 318 KVDQVLEEMRENGCPPNAVTYTSVMLHLGKAGQLRKALEVYEKMKSDGCVADTPFYSSMI 377

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR++DA ++  +M + GV     TYN              A++L ++M EDG C
Sbjct: 378 FILGKAGRLKDACDVFEDMPKQGVVRDVVTYNSMISTACAHSREETALRLLKEM-EDGSC 436

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y+ L+ M     RM +++ + + +  + + PDL +Y++L++ L +  K ++A  
Sbjct: 437 KPNVGTYHRLLKMCCKKKRMKVLKFLLDHMFKNNISPDLATYSLLVNALRKSGKVEDAYS 496

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
           +  EM+ +G  P+  T + L   L    ML    R+++ +D
Sbjct: 497 FLEEMVLRGFTPKPSTLKKLAGELESKSMLEEKVRVEEWMD 537



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 108/246 (43%), Gaps = 13/246 (5%)

Query: 16  DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI 75
           D  E F G M + GV+ +    NVL++ + +  S          + +A KV  E +   I
Sbjct: 214 DAIEAF-GRMEKFGVKKDTAALNVLIDALVKGDS----------VEHAHKVVLEFK-GSI 261

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
                SF++++H + RA     +   +  MKE G  P V +Y++ ++           ++
Sbjct: 262 PLSSRSFNVLMHGWCRARDFDNARKAMEDMKEHGFEPDVFSYTNFIEAYGHERDFRKVDQ 321

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           +L EM  NG  P+A TY               A+++Y +MK DG CV +   Y+ +I + 
Sbjct: 322 VLEEMRENGCPPNAVTYTSVMLHLGKAGQLRKALEVYEKMKSDG-CVADTPFYSSMIFIL 380

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
               R+    +++ D+   G+  D+ +Y  +I   C   + + A +   EM +    P  
Sbjct: 381 GKAGRLKDACDVFEDMPKQGVVRDVVTYNSMISTACAHSREETALRLLKEMEDGSCKPNV 440

Query: 256 VTFETL 261
            T+  L
Sbjct: 441 GTYHRL 446



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 2/180 (1%)

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
           T+ T + V++ L    + EDA E  G M + GV       N              A K+ 
Sbjct: 195 TLETMTKVMRRLARARKHEDAIEAFGRMEKFGVKKDTAALNVLIDALVKGDSVEHAHKVV 254

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
            + K  G    +  S+N+L+  +      D  R+   D+K  G  PD+ SYT  I     
Sbjct: 255 LEFK--GSIPLSSRSFNVLMHGWCRARDFDNARKAMEDMKEHGFEPDVFSYTNFIEAYGH 312

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEF 292
           ++ +++  Q   EM E G  P  VT+ ++   L ++  LR    + +K+  +     + F
Sbjct: 313 ERDFRKVDQVLEEMRENGCPPNAVTYTSVMLHLGKAGQLRKALEVYEKMKSDGCVADTPF 372


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 130/260 (50%), Gaps = 11/260 (4%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y SLI G    N ID+AE    EM E G  P+  TYN+LL+ + +      S R E+ + 
Sbjct: 837  YNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGK------SMRIEEML- 889

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               KV +EM  +G E    +++ ++    ++ + + ++D    +  +G  PT  TY  ++
Sbjct: 890  ---KVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLL 946

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              L   GRIEDAE L  EM+  G   +   YN     +R   +      L++ M + G+ 
Sbjct: 947  DGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGIN 1006

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             P++ SY I+I       +++     +  +   GL PDL +Y +LI GL + ++ +EA  
Sbjct: 1007 -PDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVS 1065

Query: 242  YFVEMIEKGLLPQKVTFETL 261
             F EM +KG++P   T+ +L
Sbjct: 1066 LFNEMQKKGIVPNLYTYNSL 1085



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 142/307 (46%), Gaps = 30/307 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           YT  I    +  R D A R L EM   G +P+V+T+ VL+  +C    +  ++       
Sbjct: 312 YTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMK 371

Query: 56  --------------FEKTIRNAE-----KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                          +K   N E     ++++ M+  G   +V +++ V+    +  +  
Sbjct: 372 KSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVF 431

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+  + MK+KGI P   +Y+S++       R  DA EL   M  +G  P+  T+  F 
Sbjct: 432 EALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFI 491

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y    ++  A++ Y  MK  G+ VP++ + N ++       R+ M + +++++K  G+
Sbjct: 492 NYYGKSGESIKAIQRYELMKSKGI-VPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGV 550

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT----FETLYRGLIQSDMLR 272
            PD  +YTM+I    +  K+ EA + F +MIE   +P  +      +TLY+     +  +
Sbjct: 551 SPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQ 610

Query: 273 TWRRLKK 279
            + +LK+
Sbjct: 611 IFYQLKE 617



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 122/258 (47%), Gaps = 11/258 (4%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M E G+  N  TYN L+  + +         F+   R A +V+  M V G+ P V ++S+
Sbjct: 230 MKEAGIVLNAYTYNGLVYFLVKSG-------FD---REALEVYKVMMVDGVVPSVRTYSV 279

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           ++  + +    +  L  L  M+  G+ P V +Y+  ++ L    R ++A  +L EM   G
Sbjct: 280 LMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEG 339

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
             P   T+    +        + A  ++ +MK+     P+  +Y  L+  F        V
Sbjct: 340 CKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQ-KPDRVTYITLLDKFADNGESQSV 398

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            EIWN +K  G   ++ +YT +I  LC+  +  EA + F EM +KG++P++ ++ +L  G
Sbjct: 399 MEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISG 458

Query: 265 LIQSDMLRTWRRLKKKLD 282
            +++D       L K +D
Sbjct: 459 FLKADRFGDALELFKYMD 476



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 104/232 (44%), Gaps = 19/232 (8%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y  L+ G  K  RI+ AE    EM+E G + N   YN+LLNG              +   
Sbjct: 942  YGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNG-------------HRIAG 988

Query: 62   NAEKV---FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            N EKV   F +M  +GI PD+ S++I++    +A Q    L     + E G+ P + TY+
Sbjct: 989  NTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYN 1048

Query: 119  SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
             ++  L    R+E+A  L  EM + G+ P+  TYN           A  A K+Y ++   
Sbjct: 1049 LLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTK 1108

Query: 179  GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
            G   PN+ +YN LI  +      D     +  +   G  P  +S T  IH L
Sbjct: 1109 GW-KPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLP--NSSTCHIHEL 1157



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 17/259 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+Y   K      A      M+  GV P+V TY+VL+    +R             R
Sbjct: 242 YNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKR-------------R 288

Query: 62  NAEKVF---DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           + E V     EM   G++P+V S++I + V  +A +   +   L  M+ +G  P V T++
Sbjct: 289 DVETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHT 348

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            +++ LC  GRI DA+++  +M ++   P   TY     ++    ++   M+++  MK D
Sbjct: 349 VLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKAD 408

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G    N+ +Y  +I     + R+    E+++++K  G+ P+  SY  LI G  +  ++ +
Sbjct: 409 GYN-DNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGD 467

Query: 239 ACQYFVEMIEKGLLPQKVT 257
           A + F  M   G  P   T
Sbjct: 468 ALELFKYMDIHGPKPNGYT 486



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/293 (20%), Positives = 127/293 (43%), Gaps = 26/293 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI- 60
           YT++I   C++ R+  A     EM ++G+ P   +YN L++G  +      +    K + 
Sbjct: 417 YTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMD 476

Query: 61  -------------------RNAEKV-----FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                              ++ E +     ++ M+ +GI PDV + + VL   +++ +  
Sbjct: 477 IHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLG 536

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           ++    + +K  G+ P   TY+ ++KC     + ++A ++  +M+ N   P     N   
Sbjct: 537 MAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLI 596

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                    + A +++ Q+KE  L  P   +YN L+       ++  V  +  ++  S  
Sbjct: 597 DTLYKAGRGDEAWQIFYQLKEMNL-EPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNY 655

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            P+L +Y  ++  LC+     +A      M  KG +P   ++ T+  GL++ +
Sbjct: 656 PPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEE 708



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 100/202 (49%), Gaps = 1/202 (0%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           + +  +VFD M+ + ++ +V +F+ +          + +   L  MKE GI     TY+ 
Sbjct: 185 VGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNG 244

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +V  L   G   +A E+   M+ +GV PS  TY+     +  R+D    + L R+M+  G
Sbjct: 245 LVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHG 304

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  PN++SY I I +     R D    I  +++  G  PD+ ++T+LI  LC+  +  +A
Sbjct: 305 V-KPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDA 363

Query: 240 CQYFVEMIEKGLLPQKVTFETL 261
              F +M +    P +VT+ TL
Sbjct: 364 KDVFWKMKKSDQKPDRVTYITL 385



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 123/279 (44%), Gaps = 47/279 (16%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR-- 61
           ++++G  K  R+ MA+R   E+   GV P+ +TY +++   C +AS     +F++ ++  
Sbjct: 524 AVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIK-CCSKAS-----KFDEAVKIF 577

Query: 62  -----------------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92
                                         A ++F +++   +EP   +++ +L    R 
Sbjct: 578 YDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGRE 637

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
            + +  +  L  M      P + TY++++ CLC  G + DA ++L  M   G  P   +Y
Sbjct: 638 GKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSY 697

Query: 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
           N         +  N A  ++ QMK+  + +P+   Y  L  +  +  ++ +++E  + +K
Sbjct: 698 NTVIYGLVKEERYNEAFSIFCQMKK--VLIPD---YATLCTILPSFVKIGLMKEALHIIK 752

Query: 213 GSGLGP----DLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
              L P    D  S   L+ G+ +K   +++ + F E+I
Sbjct: 753 EYFLQPGSKTDRSSCHSLMEGILKKAGTEKSIE-FAEII 790


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 140/299 (46%), Gaps = 46/299 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI+G+C++ +ID A     +M E G  P+V TY VL+   C        E  ++T  
Sbjct: 263 YTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFC--------EVGKET-- 312

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K F+EM   GIEP+V ++++++  + +  +    ++ L+ M EKG+  +V  +++++
Sbjct: 313 EALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALI 372

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +EDA  +L  M  N VCP++ TYN     +  +K  + AM L  +M E+ L 
Sbjct: 373 DGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLS 432

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS------------------- 222
            PN+ +YN LI        +D    + + +   G  PD  +                   
Sbjct: 433 -PNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQ 491

Query: 223 ----------------YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
                           YT LI G C+ +K+ +A   F  M+ +G  P  +TF  L  GL
Sbjct: 492 VFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGL 550



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 132/301 (43%), Gaps = 26/301 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-------- 53
           Y  L     +   ID       +M+  GVEPN++++N ++N  C+  ++  +        
Sbjct: 158 YNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLM 217

Query: 54  ------ERFEKT-----------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                 + F  T           + +A KVF+ M   G   +  S++ ++H +    +  
Sbjct: 218 KFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKID 277

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+    MKE G  P V TY+ +V   C  G+  +A +   EMV NG+ P+  TY    
Sbjct: 278 EALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLI 337

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +      +  M++   M E GL V ++  +N LI  +     M+    + + +K + +
Sbjct: 338 DYFCKVGKMDEGMEMLSTMLEKGL-VSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKV 396

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  +Y  LI G C K+    A     +M E  L P  VT+ TL  GL ++ ++ +  R
Sbjct: 397 CPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWR 456

Query: 277 L 277
           L
Sbjct: 457 L 457



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 131/299 (43%), Gaps = 30/299 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+LI G+CK  +   A      M+  G  PN +T+NVLL+G+          R E  +
Sbjct: 507 LYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGL----------RKEGKV 556

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A  + D M     +P V +++I++    R      +   L+ M   G  P V TY++ 
Sbjct: 557 EDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAF 616

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +K  C  GR+ +AEE++ ++   G+   +  Y+     Y      + A  +  +M + G 
Sbjct: 617 IKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTG- 675

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA- 239
           C P+  +Y+IL+              I+      G+G DL+S  + +        WK A 
Sbjct: 676 CEPSRQTYSILLKHL-----------IFEKYNKEGMGLDLNSTNISVDN---ANIWKIAD 721

Query: 240 ----CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
                  F +M+E+G +P   T+  L +GL + + L    RL   + E  I+      N
Sbjct: 722 FEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHN 780



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 115/261 (44%), Gaps = 13/261 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C+   +D A   L +M E  + PN+VTYN L++G+C+           + + 
Sbjct: 403 YNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCK----------ARVVD 452

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++   M   G  PD  +F   +    +  + + +      +KEK        Y++++
Sbjct: 453 SAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALI 512

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM-KEDGL 180
              C   +  DA  L   M+  G  P++ T+N      R       AM L   M K D  
Sbjct: 513 DGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDA- 571

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P +H+Y ILI   +  +  D      + +  SG  P++ +YT  I   C + +  EA 
Sbjct: 572 -KPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAE 630

Query: 241 QYFVEMIEKGLLPQKVTFETL 261
           +  V++ E+G+L     ++ L
Sbjct: 631 EMVVKIKEEGILLDSFIYDVL 651



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 16/246 (6%)

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI-------RNAEKVFDEMRVRGIEPDV 79
           + G    V +Y  LL  + R   L  +E    ++         A  V + +        V
Sbjct: 96  QHGFIHTVHSYQPLLFILVRNGFLRAAENVRNSMIKSCVSSHEARFVLNLLTHHEFSLSV 155

Query: 80  TSFSIVLHVYSRAHQPQLSLDKLNF----MKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
           TS++ +  V SR       +D+LN     M   G+ P + +++++V   C  G +  A+ 
Sbjct: 156 TSYNRLFMVLSRFGL----IDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKA 211

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
               +++ G C  + TY      Y    +   A K++  M ++G C+ N  SY  LI  F
Sbjct: 212 YFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEG-CLRNEVSYTNLIHGF 270

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
             + ++D   E++  +K  G  PD+ +YT+L+   CE  K  EA ++F EM+E G+ P  
Sbjct: 271 CEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNV 330

Query: 256 VTFETL 261
            T+  L
Sbjct: 331 YTYTVL 336



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 133/316 (42%), Gaps = 37/316 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI    + +  D A  FL +MI  G +PNVVTY   +   CR+  L           
Sbjct: 578 YTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRL----------L 627

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE++  +++  GI  D   + ++++ Y    Q   +   L  M + G  P+  TYS ++
Sbjct: 628 EAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILL 687

Query: 122 KCL-----------------------CSCGRIEDAE---ELLGEMVRNGVCPSAETYNCF 155
           K L                        +  +I D E    L  +MV  G  P+  TY+  
Sbjct: 688 KHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKL 747

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            K     +  + A +L+  MKE G+  P+ + +N L+     L   +    + + +    
Sbjct: 748 IKGLCKVEHLSLAFRLFNHMKESGIS-PSENIHNSLLSSCCKLGMHEEALRLLDSMMEYN 806

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
               L+SY +L+ GL E+   ++A + F  ++  G    +V ++ L  GL++   +    
Sbjct: 807 HLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKVLLDGLVRKGYVDECS 866

Query: 276 RLKKKLDEESITFGSE 291
           +L+  +++      S+
Sbjct: 867 QLRDIMEKTGCRLHSD 882



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 105/249 (42%), Gaps = 31/249 (12%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK-- 58
           +Y  L+  +  I ++D A   L  M + G EP+  TY++LL  +         E++ K  
Sbjct: 647 IYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIF-------EKYNKEG 699

Query: 59  ----------TIRNAE-----------KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
                     ++ NA             +F++M  +G  P+V ++S ++    +     L
Sbjct: 700 MGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSL 759

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           +    N MKE GI P+   ++S++   C  G  E+A  LL  M+        E+Y     
Sbjct: 760 AFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLLVC 819

Query: 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
               + +   A +++R +   G     +  + +L+   +    +D   ++ + ++ +G  
Sbjct: 820 GLFEQGNQEKAEEIFRSLLSCGYNYDEV-VWKVLLDGLVRKGYVDECSQLRDIMEKTGCR 878

Query: 218 PDLDSYTML 226
              D++TML
Sbjct: 879 LHSDTHTML 887



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 23/203 (11%)

Query: 87  HVYSRAHQPQLS-LDKLNFMK----EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           H+ S  + P L  L  LNF K    + G   TV +Y  ++  L   G +  AE +   M+
Sbjct: 71  HLSSLFNNPNLHPLTALNFFKWIHYQHGFIHTVHSYQPLLFILVRNGFLRAAENVRNSMI 130

Query: 142 RNGVCP-----------------SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           ++ V                   S  +YN  F         +    L++ M  DG+  PN
Sbjct: 131 KSCVSSHEARFVLNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGV-EPN 189

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + S+N ++     +  + + +  +  +   G   D  +YT LI G C+  +  +A + F 
Sbjct: 190 LISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFE 249

Query: 245 EMIEKGLLPQKVTFETLYRGLIQ 267
            M ++G L  +V++  L  G  +
Sbjct: 250 IMPQEGCLRNEVSYTNLIHGFCE 272


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 146/306 (47%), Gaps = 30/306 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI+G+C  N  + A R + +M E G  P+ VTYN +L  +C+R+ L           
Sbjct: 214 FNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQL----------T 263

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +  +M+  G+ P+  +++I++H Y +    + + + +  M  KG+ P V TY+++V
Sbjct: 264 QVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMV 323

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYN-----CFFKEYRGRKDANGAMKLYRQMK 176
           + LC  G+I++A  L  +M    + P   TYN     CF  E+RG   ++ A KL  +MK
Sbjct: 324 RGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCF--EHRG---SDAAFKLVEEMK 378

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G+   N  ++NI+I  F    ++D    +   +  SG  PD  +Y  +I+G C+  K 
Sbjct: 379 ARGV-KENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKM 437

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK-------LDEESITFG 289
            EA +   EM  KGL     T  TL   +     L     L  K       LDE  +T+G
Sbjct: 438 AEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDE--VTYG 495

Query: 290 SEFQNY 295
           +    Y
Sbjct: 496 TLIMGY 501



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 131/283 (46%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+CK  ++  A + + EM  +G++ +  T N LL+ +C           EK + 
Sbjct: 424 YNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMC----------LEKQLD 473

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  + R RG   D  ++  ++  Y +  Q   +L     MKE GI  T+ TY++++
Sbjct: 474 DAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTII 533

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  G+ + A + L E++  G+ P   T N     Y        A + + +M E  L 
Sbjct: 534 RGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSL- 592

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ + NIL+        ++    ++N     G   D  +Y ++I   C++++ ++A  
Sbjct: 593 KPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFD 652

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
              EM  K L P + T+  +  GL ++       +L  K  E+
Sbjct: 653 LMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEK 695



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 133/288 (46%), Gaps = 18/288 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G  +    D A + + EM  RGV+ N VT+N+++   C           E  I 
Sbjct: 354 YNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCT----------EGKID 403

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V  +M   G  PD  +++ +++ Y +A +   +   ++ M  KG+     T ++++
Sbjct: 404 EASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLL 463

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C   +++DA  L  +  + G      TY      Y   + A+ A+KL+ +MKE G+ 
Sbjct: 464 HTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGI- 522

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V  + +YN +I       + D   +  N++   GL PD  +  ++IHG C +   ++A Q
Sbjct: 523 VATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQ 582

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML-------RTWRRLKKKLD 282
           +  +M+E  L P   T   L RGL +  ML        TW    K +D
Sbjct: 583 FHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMD 630



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 133/286 (46%), Gaps = 13/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G C   +ID A R   +M    + P+VVTYN L++G            FE    
Sbjct: 319 YNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGC-----------FEHRGS 367

Query: 62  NAE-KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           +A  K+ +EM+ RG++ +  + +I++  +    +   + + +  M E G  P   TY+++
Sbjct: 368 DAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTM 427

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G++ +A +++ EM R G+     T N         K  + A  L  + ++ G 
Sbjct: 428 INGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGY 487

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +  + +Y  LI  +    + D   ++W ++K +G+   + +Y  +I GLC   K  +A 
Sbjct: 488 ILDEV-TYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAV 546

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
               E++EKGL+P + T   +  G      +    +   K+ E S+
Sbjct: 547 DKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSL 592



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 18/269 (6%)

Query: 17  MAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIE 76
           +  +   +M      PN++T N LLN + R  S H       ++  + +VF +    G++
Sbjct: 156 LGHQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSH-------SLVFSREVFQDAVKLGVQ 208

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           P+V +F+I++H Y   +  + +L  +N M E G CP   TY++V+  LC   ++    +L
Sbjct: 209 PNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDL 268

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
           L +M  +G+ P+  TYN     Y   K    A ++   M   G+ +P++ +YN ++    
Sbjct: 269 LLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGM-LPDVWTYNTMVRGLC 327

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
              ++D    + + ++   L PD+ +Y  LI G  E +    A +   EM  +G+    V
Sbjct: 328 DEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGV 387

Query: 257 TFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           T   + +          W   + K+DE S
Sbjct: 388 THNIMIK----------WFCTEGKIDEAS 406



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 4/200 (2%)

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC---SCGRIEDAEELLGEMVR 142
           L  Y  + QP L     N MK     P + T ++++  L    S   +  + E+  + V+
Sbjct: 145 LAAYVISKQPHLGHQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVK 204

Query: 143 NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202
            GV P+  T+N     Y    +   A++L  QM E G C P+  +YN ++      +++ 
Sbjct: 205 LGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYG-CCPDNVTYNTVLTALCKRSQLT 263

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
            VR++   +K SGL P+ ++Y +L+HG C+ +  KEA +    M  KG+LP   T+ T+ 
Sbjct: 264 QVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMV 323

Query: 263 RGLIQSDMLRTWRRLKKKLD 282
           RGL     +    RL+ K++
Sbjct: 324 RGLCDEGKIDEAVRLRDKME 343



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 110/270 (40%), Gaps = 43/270 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G C   + D A   L E++E+G+ P+  T N++++G C          +E  + 
Sbjct: 529 YNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYC----------WEGAVE 578

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +  ++M    ++PD+ + +I+L    R    +  L   N    KG      TY+ ++
Sbjct: 579 KAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIII 638

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   R+EDA +L+ EM    + P   TYN              A KL  +  E G  
Sbjct: 639 SSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKG-- 696

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML----IHGLCEKQKWK 237
                                        VK     P+L +  M+    I  LC + K+K
Sbjct: 697 ---------------------------QQVKTQDTSPELGTSDMMYSEQISSLCTQGKYK 729

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           +A + F +  +KG+   K T+  L  GL++
Sbjct: 730 DAMKLFQQAEQKGVSLNKYTYIKLMDGLLK 759


>gi|449523852|ref|XP_004168937.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Cucumis sativus]
          Length = 683

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 136/267 (50%), Gaps = 12/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI   CK+  I+ AE  L EM E+   PNV+TY+ L+NG  ++  LH          
Sbjct: 118 YSALIDSRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLH---------- 167

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A KV  +M  +   P++ +++I+L    +A    ++LD  + MK+ G+   V    + V
Sbjct: 168 DAFKVLRKMVHKNAMPNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAFV 227

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +   GR+E+AEEL+ +M   G+ P    Y      +      + A+ L ++M    + 
Sbjct: 228 NNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTSKNV- 286

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V ++ ++N+LI     L + D    I++ ++  GL PDL +Y  +++G  +K  W  A +
Sbjct: 287 VFDIVTFNVLINCLFKLGKSD-TESIYSAMREMGLSPDLATYNTMLNGNFKKGNWTSALE 345

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            + EM  + L+P  +T   +  GL ++
Sbjct: 346 LWNEMKSRKLIPNAITCNIMINGLCEA 372



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 136/290 (46%), Gaps = 38/290 (13%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLN--GVCRRAS--LHPSE------ 54
           +I G C+  R++ A   L EM+  G+ P   TY +LLN     RRA   L   E      
Sbjct: 365 MINGLCEAGRMENAIDILKEMVLMGLYPTSTTYRILLNISSKSRRADTILQTHELLVNMQ 424

Query: 55  -RFEKTI--------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
            + +K +              R A  V  +M  RGI  D T+++ ++H Y  +   + + 
Sbjct: 425 LKVDKDVYNILISNLCKLGMTRKATAVLKDMEERGIIADTTTYNALIHGYCISSHLKRAF 484

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
              + M  + + P + TY+ ++  L   G I +A++LL E+ + G+ P+A TY      +
Sbjct: 485 MTYSTMLSERVSPDIETYNLLLGGLSKAGLIHEADDLLSEIKKRGLVPNACTYETLMCGH 544

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
              ++    +++Y +M   G  +P   +YN+LIG F  + +M   +E+ N+++  G+ P 
Sbjct: 545 CKVRNTKECLRIYCEMVIKGF-IPKPRAYNMLIGYFSKMGKMKQAKELMNEMQTKGVSPT 603

Query: 220 LDSYTMLIHGLCEKQKW------------KEACQYFVEMIEKGLLPQKVT 257
             +Y +LI G C   K              EA + F+EM ++G +P + T
Sbjct: 604 CTTYDILICGWCNLLKMPDLGSTLKISYRAEAKRLFIEMNDRGFVPCEST 653



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 127/271 (46%), Gaps = 12/271 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G+ K  ++  A     EM  + V  ++VT+NVL+N +           F+    
Sbjct: 258 YTNLMDGFLKSGKVSSALNLAQEMTSKNVVFDIVTFNVLINCL-----------FKLGKS 306

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           + E ++  MR  G+ PD+ +++ +L+   +      +L+  N MK + + P   T + ++
Sbjct: 307 DTESIYSAMREMGLSPDLATYNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMI 366

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+E+A ++L EMV  G+ P++ TY          + A+  ++ +  +    L 
Sbjct: 367 NGLCEAGRMENAIDILKEMVLMGLYPTSTTYRILLNISSKSRRADTILQTHELLVNMQLK 426

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V +   YNILI     L        +  D++  G+  D  +Y  LIHG C     K A  
Sbjct: 427 V-DKDVYNILISNLCKLGMTRKATAVLKDMEERGIIADTTTYNALIHGYCISSHLKRAFM 485

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
            +  M+ + + P   T+  L  GL ++ ++ 
Sbjct: 486 TYSTMLSERVSPDIETYNLLLGGLSKAGLIH 516



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 114/260 (43%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G  K      A     EM  R + PN +T N+++NG+C    +           
Sbjct: 327 YNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGRME---------- 376

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA  +  EM + G+ P  T++ I+L++ S++ +    L     +    +      Y+ ++
Sbjct: 377 NAIDILKEMVLMGLYPTSTTYRILLNISSKSRRADTILQTHELLVNMQLKVDKDVYNILI 436

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G    A  +L +M   G+     TYN     Y        A   Y  M  + + 
Sbjct: 437 SNLCKLGMTRKATAVLKDMEERGIIADTTTYNALIHGYCISSHLKRAFMTYSTMLSERVS 496

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN+L+G       +    ++ +++K  GL P+  +Y  L+ G C+ +  KE  +
Sbjct: 497 -PDIETYNLLLGGLSKAGLIHEADDLLSEIKKRGLVPNACTYETLMCGHCKVRNTKECLR 555

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            + EM+ KG +P+   +  L
Sbjct: 556 IYCEMVIKGFIPKPRAYNML 575



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 128/287 (44%), Gaps = 11/287 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + S++YG CK  ++   +  L EM + G+  N V+Y +LL+ + +             + 
Sbjct: 13  FGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSYTILLDALFKAGK----------VA 62

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A      M VRG   DV + ++++    ++ Q + +      + +  + P   TYS+++
Sbjct: 63  EALMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLYQLNLVPNYITYSALI 122

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G I  AE  L EM      P+  TY+     Y  +   + A K+ R+M      
Sbjct: 123 DSRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLHDAFKVLRKMVHKN-A 181

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+ +Y IL+         D+  ++++ +K  GL  ++      ++ +    + +EA +
Sbjct: 182 MPNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAFVNNMKRSGRMEEAEE 241

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
              +M   GL P  V +  L  G ++S  + +   L +++  +++ F
Sbjct: 242 LVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTSKNVVF 288


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 129/267 (48%), Gaps = 16/267 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I   CK+  +D A       +    EP V  YN L++GVC+        RF++   
Sbjct: 217 YTTVISSMCKLGDVDKARE-----LAMKFEPVVPVYNALIHGVCKEC------RFKE--- 262

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + +EM  RG++P+V S+S V+   S     +LSL     M  +G  P V T++S++
Sbjct: 263 -AFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLI 321

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K     GR+ DA  L   M+R GV P+   YN          + + A+ ++ QM++D + 
Sbjct: 322 KGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSI- 380

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y+ +I  F     +    E WN +   G  P++  YT ++  LC+   + +A  
Sbjct: 381 RPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFD 440

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
               MI  G  P  +TF    +GL ++
Sbjct: 441 LIDNMISDGCPPTVITFNNFIKGLCRA 467



 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 141/288 (48%), Gaps = 11/288 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI+G CK  R   A   + EM++RGV+PNV++Y+ +++ +    ++  S       
Sbjct: 246 VYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELS------- 298

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                VF  M VRG  P+V +F+ ++  +    +   ++   N M  +G+ P V  Y+++
Sbjct: 299 ---LAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTL 355

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LCS G +++A  +  +M ++ + P+  TY+     +    D   A + + +M   G 
Sbjct: 356 IHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCG- 414

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN+  Y  ++ +   ++  D   ++ +++   G  P + ++   I GLC   + + A 
Sbjct: 415 CRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAM 474

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
               +M +   LP   T+  L  GL +++  R    L ++L+E  + F
Sbjct: 475 NVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEF 522



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 131/291 (45%), Gaps = 21/291 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL---------- 50
           +Y  ++      N   M       M   G+EPNV TYNVLL  +C+   +          
Sbjct: 146 IYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEM 205

Query: 51  -----HPSE-RFEKTIRNAEKVFDEMRVRGI----EPDVTSFSIVLHVYSRAHQPQLSLD 100
                 P +  +   I +  K+ D  + R +    EP V  ++ ++H   +  + + + D
Sbjct: 206 SNKGCDPDDVSYTTVISSMCKLGDVDKARELAMKFEPVVPVYNALIHGVCKECRFKEAFD 265

Query: 101 KLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160
            +N M ++G+ P V +YS+V+ CL   G +E +  + G M   G  P+ +T+    K + 
Sbjct: 266 LMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFF 325

Query: 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
            R     A+ L+  M  +G+  PN+ +YN LI    +   MD    +WN ++   + P++
Sbjct: 326 VRGRVGDAVGLWNLMIREGVS-PNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNV 384

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
            +Y+ +I+G  +      AC+ + +MI  G  P  V +  +   L Q  M 
Sbjct: 385 TTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMF 435



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 132/287 (45%), Gaps = 19/287 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSLI G+    R+  A      MI  GV PNVV YN L++G+C   ++           
Sbjct: 317 FTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDE--------- 367

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V+++M    I P+VT++S +++ ++++     + +  N M   G  P V  Y+ +V
Sbjct: 368 -AISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMV 426

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC     + A +L+  M+ +G  P+  T+N F K          AM +  QM E   C
Sbjct: 427 DVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQM-EKYEC 485

Query: 182 VPNMHSYN-ILIGMFMALNRMDMVRE---IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
           +PN+ +YN +L G+F    R +  RE   +  +++   +  D  +Y  +++G       +
Sbjct: 486 LPNIRTYNELLDGLF----RANAFREACGLIRELEERKVEFDCVTYNTIMYGFSFNGMHQ 541

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
           +  Q   +M+  G+    +T  T      +   ++T  ++   +  E
Sbjct: 542 QVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKTAIKVLDNISAE 588



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 123/285 (43%), Gaps = 45/285 (15%)

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
           E G EP+V  YN++L+ +        S+   K I     +++ M+  G+EP+V +++++L
Sbjct: 137 EFGCEPSVKIYNLVLDALL-------SQNLFKMIN---ALYNNMKSEGLEPNVFTYNVLL 186

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE----------- 135
               +  +   +   L  M  KG  P   +Y++V+  +C  G ++ A E           
Sbjct: 187 KALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELAMKFEPVVPV 246

Query: 136 -------------------LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
                              L+ EMV  GV P+  +Y+          +   ++ ++ +M 
Sbjct: 247 YNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMF 306

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G C PN+ ++  LI  F    R+     +WN +   G+ P++ +Y  LIHGLC     
Sbjct: 307 VRG-CRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNM 365

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML----RTWRRL 277
            EA   + +M +  + P   T+ T+  G  +S  L     TW ++
Sbjct: 366 DEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKM 410



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 13/234 (5%)

Query: 42  NGVCRRASLHPSERFEKTIRNAEK-----VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +G  +   L      +K  RN E      +  +M++  +      F  V+  Y R++  +
Sbjct: 67  SGTFKHTHLTYETMIDKLGRNNEMDGVSYLLQQMKLENVPCSQELFQFVIKCYRRSNLGE 126

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
             L     ++E G  P+V  Y+ V+  L S    +    L   M   G+ P+  TYN   
Sbjct: 127 QGLKMFYRIREFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLL 186

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           K        +GA KL  +M   G C P+  SY  +I     L  +D  RE+         
Sbjct: 187 KALCQNGKVDGACKLLVEMSNKG-CDPDDVSYTTVISSMCKLGDVDKAREL-----AMKF 240

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
            P +  Y  LIHG+C++ ++KEA     EM+++G+ P  +++ T+   L  SDM
Sbjct: 241 EPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCL--SDM 292



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 2/204 (0%)

Query: 80  TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP-TVATYSSVVKCLCSCGRIEDAEELLG 138
            S S V+ V  + H    SL+    +   G    T  TY +++  L     ++    LL 
Sbjct: 39  VSESHVVKVLRQEHDIVSSLEYFKSLSNSGTFKHTHLTYETMIDKLGRNNEMDGVSYLLQ 98

Query: 139 EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL 198
           +M    V  S E +    K YR        +K++ +++E G C P++  YN+++   ++ 
Sbjct: 99  QMKLENVPCSQELFQFVIKCYRRSNLGEQGLKMFYRIREFG-CEPSVKIYNLVLDALLSQ 157

Query: 199 NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
           N   M+  ++N++K  GL P++ +Y +L+  LC+  K   AC+  VEM  KG  P  V++
Sbjct: 158 NLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSY 217

Query: 259 ETLYRGLIQSDMLRTWRRLKKKLD 282
            T+   + +   +   R L  K +
Sbjct: 218 TTVISSMCKLGDVDKARELAMKFE 241


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 137/301 (45%), Gaps = 48/301 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHP-SERFEKTI 60
           +T+LI G CK+ R++ A   LG M+++G+  + VT+  L++G C+          FE  +
Sbjct: 478 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMV 537

Query: 61  RN------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            N                        A  +  +M   G+ P V + +I++  + RA +  
Sbjct: 538 ENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETA 597

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           LSL  L  MK+ G  P V TY+ ++  LC+ GR+E+AE +L  M   GV P+  TY    
Sbjct: 598 LSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLV 657

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE---------- 206
           K +      + A ++   M ++G C PN H Y+ L+  F+  N     R           
Sbjct: 658 KAHVKAGRLDRAFQIVSTMVKNG-CQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDAR 716

Query: 207 -----------IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
                      + N++K  G+ P  D Y  L+ GLC++ +  EA Q   +M++ GL P K
Sbjct: 717 SLSSEENDNNCLSNEIKKCGV-PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDK 775

Query: 256 V 256
            
Sbjct: 776 A 776



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 134/263 (50%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI+G C+  R++ A +   EM+E+G +P+  TY VL+   C                
Sbjct: 268 YSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIG----------MTD 317

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ DEM  +   P+V +++I++    R  + + +      M + G+CP + T+++++
Sbjct: 318 KAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALI 377

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +  A +LL  M +    P+  TYN   +       +  A  L R++ ++GL 
Sbjct: 378 NGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGL- 436

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+  +YNIL+  F    +++M   I+N +  +GL PD  ++T LI GLC+  + ++A  
Sbjct: 437 LPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANG 496

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
               M++KG+   +VTF  L  G
Sbjct: 497 ILGSMVKKGISLDEVTFTALIDG 519



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 141/326 (43%), Gaps = 48/326 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+ G C++++   A   L  +++ G+ P+ VTYN+L++G C+   L+          
Sbjct: 408 YNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNM--------- 458

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F+ M   G+EPD  +F+ ++    +  + + +   L  M +KGI     T+++++
Sbjct: 459 -AFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALI 517

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF----KEYRGRKDANG---------- 167
              C  G+ +D   L   MV N    +A T+NCF     K+Y+   +AN           
Sbjct: 518 DGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYK-LNEANAMLGKMMKYGL 576

Query: 168 ----------------------AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
                                 ++K+  +MK+ G C PN+++Y I+I       R++   
Sbjct: 577 VPSVVTHTILIEGHCRAGETALSLKMLERMKQAG-CSPNVYTYTIIINGLCNNGRVEEAE 635

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            I   +   G+ P+  +Y +L+    +  +   A Q    M++ G  P    +  L  G 
Sbjct: 636 TILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGF 695

Query: 266 IQSDMLRTWRRLKKKLDEESITFGSE 291
           + S+     R L    D ++ +  SE
Sbjct: 696 VLSNTAIGARALSSTGDLDARSLSSE 721



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 136/305 (44%), Gaps = 46/305 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G+CK   +  A + L  M +   +PN+ TYN L+ G+CR +  +      K   
Sbjct: 373 FNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSY------KAFL 426

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +V D     G+ PD  +++I++  + +  Q  ++ +  N M   G+ P   T+++++
Sbjct: 427 LLRRVVD----NGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 482

Query: 122 KCLCSCGRIEDAEELLGEMVRNG-----------------------VC------------ 146
             LC  GR+E A  +LG MV+ G                       VC            
Sbjct: 483 DGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 542

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
            +A T+NCF          N A  +  +M + GL VP++ ++ ILI          +  +
Sbjct: 543 TTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGL-VPSVVTHTILIEGHCRAGETALSLK 601

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +   +K +G  P++ +YT++I+GLC   + +EA      M   G+ P   T+  L +  +
Sbjct: 602 MLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHV 661

Query: 267 QSDML 271
           ++  L
Sbjct: 662 KAGRL 666



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 124/273 (45%), Gaps = 16/273 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG--VEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           Y +++   CK   +  AE F  +++  G  ++ +V T  VL N  CRR  L  + R    
Sbjct: 197 YRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLAN--CRRDDLGEAFR---- 250

Query: 60  IRNAEKVFDEM-RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
                 VF++M +     P+  ++SI++H    A + + +      M EKG  P+  TY+
Sbjct: 251 ------VFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYT 304

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++K  C  G  + A ++L EM      P+  TY               A  ++R+M + 
Sbjct: 305 VLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKH 364

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           GLC P + ++N LI  +     +    ++ + ++     P++ +Y  L+ GLC   K  +
Sbjct: 365 GLC-PGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYK 423

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           A      +++ GLLP +VT+  L  G  +   L
Sbjct: 424 AFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQL 456



 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 77/187 (41%), Gaps = 46/187 (24%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNG-------VCRRA------ 48
           Y  L+    K  R+D A + +  M++ G +PN   Y+ LL+G       +  RA      
Sbjct: 653 YAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGD 712

Query: 49  ----SLHPSERFEKTIRN----------------------------AEKVFDEMRVRGIE 76
               SL   E     + N                            A+++  +M   G+ 
Sbjct: 713 LDARSLSSEENDNNCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLF 772

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           PD    SI+ H Y +  +    L+ +  + +    P+ A+Y  V+  L + GR+++A++L
Sbjct: 773 PDKAISSIIEH-YCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKL 831

Query: 137 LGEMVRN 143
           + ++VR+
Sbjct: 832 VSDLVRH 838


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 127/269 (47%), Gaps = 15/269 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI   C    +  A     +M+ RG  P+VVTY++LL+  C+          E   +
Sbjct: 163 YNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCK----------ESGYK 212

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + DEMR +G EPD+ +++++++          +L  LN +   G  P   TY+ V+
Sbjct: 213 QAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVL 272

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LCS  R E+A++LL +M  N   P   T+N        +     A K+  QM E G C
Sbjct: 273 KSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHG-C 331

Query: 182 VPNMHSYNILIGMFMALNRMD----MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            P++ +Y+ ++       R+D    +++E+  ++      PD  ++  +I  LC+K  + 
Sbjct: 332 TPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFD 391

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLI 266
            A +   EM E G +P   T+  +  G +
Sbjct: 392 RAIKVVDEMSEHGCIPDITTYNCIVDGFL 420



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 144/349 (41%), Gaps = 74/349 (21%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------------- 48
           Y+ L+   CK +    A   L EM  +G EP++VTYNVL+N +C +              
Sbjct: 198 YSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLP 257

Query: 49  ----------------SLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92
                           SL  SER+E+    A+K+  +M      PD  +F+ V+    + 
Sbjct: 258 SYGCKPDAVTYTPVLKSLCSSERWEE----ADKLLTKMFSNDCAPDEVTFNAVITSLCQK 313

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA----EELLGEMVRNGVCPS 148
                +   L  M E G  P + TYSS++  LC   R+++A    +ELL EMV     P 
Sbjct: 314 GFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPD 373

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM------------ 196
             T+N        +   + A+K+  +M E G C+P++ +YN ++  F+            
Sbjct: 374 QVTFNTIITSLCQKGLFDRAIKVVDEMSEHG-CIPDITTYNCIVDGFLCKSCKTEEALDL 432

Query: 197 ---------------------ALNRMD-MVREI--WNDVKGSGLGPDLDSYTMLIHGLCE 232
                                 L+R D M R I  +  V+  GL PD   Y  ++ GLC+
Sbjct: 433 LNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCK 492

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           K +   A  +F  M+  G +P + T+  L  G+     L   + L   L
Sbjct: 493 KWRTDLAIDFFAYMVSNGCMPDESTYIILVEGIAYEGFLEEAKELLGNL 541



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 124/283 (43%), Gaps = 23/283 (8%)

Query: 8   GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVF 67
           G  +   +D A R +  +   G +P V+  N+L+  +C           +  + +AE+V 
Sbjct: 70  GLVQRGELDGALRLVHSISGSGKDPAVIPCNILIKKLCA----------DGRVADAERVV 119

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLS---LDKLNFMKEKGICPTVATYSSVVKCL 124
           + +   G    + +++ +++ Y RA     +   +D + F       P   TY+ +++ L
Sbjct: 120 EAL---GPSATIITYNTMVNGYCRAGNIDAARRMIDSVPFA------PDTFTYNPLIRAL 170

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G + DA  +  +M+  G  PS  TY+              A+ L  +M+  G C P+
Sbjct: 171 CVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKG-CEPD 229

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +YN+LI    +   +    ++ N +   G  PD  +YT ++  LC  ++W+EA +   
Sbjct: 230 IVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLT 289

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +M      P +VTF  +   L Q   +    ++  ++ E   T
Sbjct: 290 KMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCT 332



 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 118/283 (41%), Gaps = 17/283 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI   C   R+  AER +  +   G    ++TYN ++NG CR  ++  + R   ++  A 
Sbjct: 102 LIKKLCADGRVADAERVVEAL---GPSATIITYNTMVNGYCRAGNIDAARRMIDSVPFA- 157

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
                       PD  +++ ++           +L   + M  +G  P+V TYS ++   
Sbjct: 158 ------------PDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDAT 205

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C     + A  LL EM   G  P   TYN        + D   A+K+   +   G C P+
Sbjct: 206 CKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYG-CKPD 264

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
             +Y  ++    +  R +   ++   +  +   PD  ++  +I  LC+K     A +   
Sbjct: 265 AVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLA 324

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +M E G  P  +T+ ++  GL +   +    +L K+L  E ++
Sbjct: 325 QMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVS 367


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 146/320 (45%), Gaps = 53/320 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTI 60
           YTSL+ G+ K+ R+D A   L E +ERG  P+ VTY  +++G+C+   +    ERF    
Sbjct: 292 YTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFH--- 348

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                   EMR RG EPD  +++ ++  + +A     +      M + G   +  TY+ +
Sbjct: 349 --------EMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNII 400

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  GR+ +A      M   G   +  TY+     +    + + A++L+R+M + G 
Sbjct: 401 LDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRG- 459

Query: 181 CVPNMHSYNILI-GMFMA--------------------------------LNRMDMVR-- 205
           C PN+ SYNI+I G+  A                                  R+D V   
Sbjct: 460 CEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDG 519

Query: 206 -EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            E++  +   G  P+L SY++L+ G+C     +   + F EM+ +G+ P  V F TL R 
Sbjct: 520 VELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRW 579

Query: 265 LIQS----DMLRTWRRLKKK 280
           L  +    + L  +R L+++
Sbjct: 580 LCIAGRVDEALEVFRELERR 599



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 139/284 (48%), Gaps = 16/284 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G  K  R+D A   L +M+E+G  P + TY V+++G      L  + R E+   
Sbjct: 114 YTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDG------LSKAGRVEE--- 164

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE----KGICPTVATY 117
            A ++F +M   G  PD   ++ ++   ++  +   +L  LN M E    +G+ P V  +
Sbjct: 165 -ARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIH 223

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + V++ LC+ G +EDA     E+  + +  +  T+N         +    A+   ++M E
Sbjct: 224 NLVIRQLCASGNLEDALAYFDEL-DDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSE 282

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
              C P + +Y  L+  F+ L R+D       +    G  PD  +YT +I GLC+  + +
Sbjct: 283 RR-CFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVE 341

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           E C+ F EM  +G  P  VT+  L  G +++ M+    R+ +++
Sbjct: 342 EGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQM 385



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 149/327 (45%), Gaps = 42/327 (12%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIE----RGVEPNVVTYNVLLNGVCRR--------- 47
           +YT+LI G  KI ++D A  +L +M+E    RGVEP+VV +N+++  +C           
Sbjct: 183 VYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAY 242

Query: 48  -------------------ASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
                              A+L  +ER E+ I   +K    M  R   P + +++ ++  
Sbjct: 243 FDELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKK----MSERRCFPTLFTYTSLVDG 298

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           + +  +   +L +L    E+G  P   TY+S++  LC  GR+E+  E   EM   G  P 
Sbjct: 299 FLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPD 358

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
           A TY      +   K    A ++YRQM + G  V  + +YNI++       R+      +
Sbjct: 359 AVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTV-TYNIILDGLCKAGRVAEAYATF 417

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             ++  G    + +Y+ L+ G C +     A + F  M+++G  P  V++  + RGL ++
Sbjct: 418 LAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRA 477

Query: 269 DMLRTW-----RRLKKKLDEESITFGS 290
             L        + L+++L  +  TF S
Sbjct: 478 GKLAKAYFYFEKLLQRRLCPDVYTFNS 504



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 126/285 (44%), Gaps = 19/285 (6%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T+L+ G CK  ++D A   L EM      P++V + V++NG+CR          EK +  
Sbjct: 13  TALLNGLCKTGQLDRAMLLLDEM---PCSPDMVAFTVVINGLCR----------EKRLDE 59

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  V +     G EPD  ++++ +    +A +   +   L  M EK   PT  TY+++V 
Sbjct: 60  AFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVD 119

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            L   GR+++A  +L +MV  G  P+ +TY               A +++  M  +G C 
Sbjct: 120 GLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNG-CR 178

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVK----GSGLGPDLDSYTMLIHGLCEKQKWKE 238
           P+   Y  LI     + ++D      N +       G+ PD+  + ++I  LC     ++
Sbjct: 179 PDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLED 238

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           A  YF E+ +  L     TF  L   L +++         KK+ E
Sbjct: 239 ALAYFDEL-DDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSE 282



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 131/272 (48%), Gaps = 20/272 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T +I G C+  R+D A   L   +  G EP+ VTYNV ++G+C+      +ER    + 
Sbjct: 44  FTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCK------AER----VD 93

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++  +M  +   P   +++ ++    +A +   ++  L  M EKG  PT+ TY+ V+
Sbjct: 94  DAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVI 153

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+E+A  +  +M+ NG  P A  Y             + A+    QM E+G C
Sbjct: 154 DGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENG-C 212

Query: 182 V----PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM--LIHGLCEKQK 235
                P++  +N++I    A   ++     ++++  S    DL  +T   L+  LC+ ++
Sbjct: 213 ARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDS---LDLTHFTFNPLVAALCKAER 269

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            +EA  +  +M E+   P   T+ +L  G ++
Sbjct: 270 TEEAIAFVKKMSERRCFPTLFTYTSLVDGFLK 301



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 101/215 (46%), Gaps = 28/215 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSE-RFEK-- 58
           Y++L+ G+C    +  A      M++RG EPN+V+YN+++ G+CR   L  +   FEK  
Sbjct: 432 YSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLL 491

Query: 59  -----------------------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                  T+ +  ++F+ M  +G  P++ S+SI++    RA   
Sbjct: 492 QRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRAGGL 551

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           +++L+  + M  +G+ P V  ++++++ LC  GR+++A E+  E+ R    P A +Y   
Sbjct: 552 EVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSA-PDAWSYWSL 610

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
                  +    A  L   MK  G C P  +   +
Sbjct: 611 LDALSRCERMEEARLLSFHMKLQG-CAPRHYDLTV 644



 Score = 43.5 bits (101), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 38/67 (56%)

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           PD+ ++T++I+GLC +++  EA       +  G  P  VT+     GL +++ +    +L
Sbjct: 39  PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 98

Query: 278 KKKLDEE 284
            KK+DE+
Sbjct: 99  LKKMDEK 105


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 135/285 (47%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI  +C+  ++ +A +   E+ +RGV  N VTYN+L+ G+CR+            + 
Sbjct: 215 YNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQ----------VS 264

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE + + M+   I P   +F++++       Q   +L  L  +K  G+CPT+ TY+ ++
Sbjct: 265 KAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILI 324

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G      EL+ EM   G+ PS  TY      +    D   A +++  MK  GL 
Sbjct: 325 SGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGL- 383

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+ H+Y +LI        M    +++  +    L P+   Y  +I+G C++    +A +
Sbjct: 384 VPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALK 443

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +  EM++ G+ P   ++ +  + L +       +RL K++ E  +
Sbjct: 444 FLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGL 488



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 132/264 (50%), Gaps = 11/264 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT +I G+ K            +M   GV PN+ TYN L+   CR   L          
Sbjct: 179 IYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSL-------- 230

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A KVFDE+  RG+  +  +++I++    R  Q   +   L  MK   I PT  T++ +
Sbjct: 231 --AFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNML 288

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC+ G+++ A   L ++   G+CP+  TYN     +    +++   +L R+M++ G+
Sbjct: 289 MDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGI 348

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  +Y IL+  F+  + ++   E+++ +K  GL PD  +Y +LIHGLC K    EA 
Sbjct: 349 S-PSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEAS 407

Query: 241 QYFVEMIEKGLLPQKVTFETLYRG 264
           + +  M+E  L P  V + T+  G
Sbjct: 408 KLYKSMVEMHLQPNDVIYNTMING 431



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 138/283 (48%), Gaps = 12/283 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI   C+   ID A+     M + G+  N   Y +++NG  ++   +  + FE   
Sbjct: 144 IYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKG--YKKDGFE--- 198

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                ++ +M++ G+ P++ +++ ++  Y R  +  L+    + + ++G+     TY+ +
Sbjct: 199 -----LYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNIL 253

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G++  AE LL  M R  + P+  T+N            + A+    ++K  GL
Sbjct: 254 IGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGL 313

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P + +YNILI  F  +    +V E+  +++  G+ P   +YT+L++        ++A 
Sbjct: 314 C-PTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAY 372

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL-IQSDMLRTWRRLKKKLD 282
           + F  M   GL+P + T+  L  GL I+ +M+   +  K  ++
Sbjct: 373 EMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVE 415



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 118/277 (42%), Gaps = 12/277 (4%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           K   +D    F  E + R  + +V ++ + +   C   ++  S+ FE        +  +M
Sbjct: 85  KSGNLDRTWGFFTEYLGR-TQFDVYSFGITIKAFCENGNV--SKGFE--------LLAQM 133

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
              G+ P+V  ++I++    R      +    + M + G+      Y+ ++      G  
Sbjct: 134 ETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYK 193

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           +D  EL  +M   GV P+  TYN    EY      + A K++ ++ + G+   N  +YNI
Sbjct: 194 KDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVAC-NAVTYNI 252

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           LIG      ++     +   +K + + P   ++ ML+ GLC   +  +A  Y  ++   G
Sbjct: 253 LIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIG 312

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           L P  VT+  L  G  +         L +++++  I+
Sbjct: 313 LCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGIS 349



 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 10/77 (12%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I G+CK      A +FL EM++ GV PNV +Y   +  +C+           K+I
Sbjct: 424 IYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDG---------KSI 474

Query: 61  RNAEKVFDEMRVRGIEP 77
             A+++  EM   G++P
Sbjct: 475 E-AKRLLKEMTEAGLKP 490


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 148/317 (46%), Gaps = 42/317 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSL+ G+ K    D A   + +M+  G + +  TY+VLL  +C+          +K + 
Sbjct: 509 YTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCK----------QKKLN 558

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D+M + G++ ++ +++I++    +  +   +    N M   G  P+  TY+  +
Sbjct: 559 EALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFI 618

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+IE+AE L+GEM R+GV P   TYN F          + A    ++M  D  C
Sbjct: 619 SSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMI-DASC 677

Query: 182 VPNMHSYNILIGMFMALNRMDM----VREIWNDVK------------GSGLGPDLDSYTM 225
            PN  +Y IL+  F+ ++ +D        +WN ++              GL P   +Y+ 
Sbjct: 678 EPNYWTYWILLKHFLKMSLVDAHYVDTSGMWNWIELDTVWQLLERMVKHGLNPTAVTYSS 737

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ--SDMLRTWRRLKKKLDE 283
           +I G C+  + +EAC  F  M  K + P     E +Y  LI+   D+         KL  
Sbjct: 738 IIAGFCKATRLEEACVLFDHMRGKDISPN----EEIYTMLIKCCCDI---------KLFG 784

Query: 284 ESITFGSEFQNYHFKPY 300
           ++++F ++   + F+P+
Sbjct: 785 KAVSFVTDMIEFGFQPH 801



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 139/288 (48%), Gaps = 12/288 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G C+   +  A   L  M++ G   N+ TY +L+ G+C+   +H          
Sbjct: 163 YTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRIH---------- 212

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V +EM +RG+ P V +++ ++  Y ++ + + +L     M+  G  P   TY+ ++
Sbjct: 213 GARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILI 272

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   + ++AEELL + +  G  P+  T+      Y   +  + A+++   M     C
Sbjct: 273 YGLCG-EKPDEAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSN-C 330

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++ +Y +LI + +   R    +E  +++  +GL P++  YT +I G C+  K   A +
Sbjct: 331 KLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALE 390

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
            F  M  +G  P   T+ +L  GLIQ   L     L  K+ E+ IT G
Sbjct: 391 VFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPG 438



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 138/309 (44%), Gaps = 32/309 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTS+I G+CK+ ++  A      M   G  PN  TY+ L+ G+ +   LH +      +
Sbjct: 371 IYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKM 430

Query: 61  R-------------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           +                         NA ++F+ M   G+ PD  +++++ H   ++ + 
Sbjct: 431 QEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRA 490

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           +   +  +F+  KG+  T  TY+S+V      G  + A  L+ +MV  G    + TY+  
Sbjct: 491 E---EAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVL 547

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGL-CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
            +    +K  N A+ +  QM   G+ C  N+ +Y I+I   +   + D  + ++N++  S
Sbjct: 548 LQALCKQKKLNEALSILDQMTLSGVKC--NIVAYTIIISEMIKEGKHDHAKSMFNEMISS 605

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD-MLRT 273
           G  P   +YT+ I   C+  + +EA     EM   G+ P  VT+     G      M R 
Sbjct: 606 GHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRA 665

Query: 274 WRRLKKKLD 282
           +  LK+ +D
Sbjct: 666 FSTLKRMID 674



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 140/290 (48%), Gaps = 20/290 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G CK  RI  A R L EM  RGV P+V TYN +++G C+   +          +
Sbjct: 198 YTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRM----------K 247

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +   M   G  PD  +++I+++      +P  + + LN    +G  PTV T+++++
Sbjct: 248 DALGIKALMERNGCNPDDWTYNILIYGLC-GEKPDEAEELLNDAIVRGFTPTVITFTNII 306

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETY----NCFFKEYRGRKDANGAMKLYRQMKE 177
              C   RI+DA  +   M+ +      + Y    N   K+ R ++    A +   +M  
Sbjct: 307 NGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKE----AKETVSEMFA 362

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
           +GL  PN+  Y  +I  +  + ++    E++  ++  G  P+  +Y+ LI+GL + QK  
Sbjct: 363 NGL-APNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLH 421

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           +A     +M E G+ P  +T+ TL +G  +        RL + +++  +T
Sbjct: 422 KAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLT 471



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 128/295 (43%), Gaps = 30/295 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI- 60
           Y  LIYG C   + D AE  L + I RG  P V+T+  ++NG C+   +  + R + ++ 
Sbjct: 268 YNILIYGLCG-EKPDEAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSML 326

Query: 61  ------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                   + A++   EM   G+ P+V  ++ ++  Y +  +  
Sbjct: 327 SSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVG 386

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+    M+ +G  P   TYSS++  L    ++  A  L+ +M  +G+ P   TY    
Sbjct: 387 AALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLI 446

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           +    + + + A +L+  M+++GL  P+  +YN+L     AL +     E ++ +   G+
Sbjct: 447 QGQCKKHEFDNAFRLFEMMEQNGL-TPDEQAYNVLT---HALCKSGRAEEAYSFLVRKGV 502

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
                +YT L+ G  +      A     +M+ +G      T+  L + L +   L
Sbjct: 503 VLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKL 557



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 126/291 (43%), Gaps = 31/291 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT  I  +CKI +I+ AE  +GEM   GV P+VVTYNV +NG      +      ++   
Sbjct: 614 YTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYM------DRAFS 667

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             +++ D       EP+  ++ I+L      H  ++SL   +++   G+   +       
Sbjct: 668 TLKRMIDA----SCEPNYWTYWILLK-----HFLKMSLVDAHYVDTSGMWNWI------- 711

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                   ++   +LL  MV++G+ P+A TY+     +        A  L+  M+   + 
Sbjct: 712 -------ELDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMRGKDIS 764

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN   Y +LI     +           D+   G  P L+SY  LI GLC++  + +A  
Sbjct: 765 -PNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPHLESYHYLIVGLCDEGDYDKAKS 823

Query: 242 YFVEMIE-KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSE 291
            F +++  +     +V ++ L  GL+++  +    +L   ++       SE
Sbjct: 824 LFCDLLGMEDYNHNEVAWKILNDGLLKAGHVDFCSQLLSAMENRHCQIDSE 874



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 8/204 (3%)

Query: 49  SLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK 108
           ++    R    +R A  +   M + G   +  S++I++         + +L  L  M + 
Sbjct: 130 AIQAIRRVGGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLVMMVQD 189

Query: 109 GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGR-KDA 165
           G    + TY+ ++K LC  GRI  A  +L EM   GV PS  TYN     Y   GR KDA
Sbjct: 190 GCSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDA 249

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
            G   L   M+ +G C P+  +YNILI   +   + D   E+ ND    G  P + ++T 
Sbjct: 250 LGIKAL---MERNG-CNPDDWTYNILI-YGLCGEKPDEAEELLNDAIVRGFTPTVITFTN 304

Query: 226 LIHGLCEKQKWKEACQYFVEMIEK 249
           +I+G C+ ++  +A +    M+  
Sbjct: 305 IINGYCKAERIDDALRVKTSMLSS 328



 Score = 37.4 bits (85), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           SYT+LI GLCE +  +EA    V M++ G      T+  L +GL +   +   RR+ +++
Sbjct: 162 SYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRIHGARRVLEEM 221


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 128/264 (48%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G C+   ++ A  F  EM++ G+ P+  TY  L+NG+C+   L          +
Sbjct: 283 YNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRL----------K 332

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ + DEM   G++P+V  ++ ++  + +  +   + D LN M   G+ P    Y +++
Sbjct: 333 EAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLI 392

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  G++  A +LL EM++ G  P   TY+   + +    D +GA +L  +M+  G+ 
Sbjct: 393 RGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGI- 451

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN ++Y I+I              +  ++   GL P+   Y  LI G  ++     AC+
Sbjct: 452 LPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACE 511

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
               M +  +LP    + +L +GL
Sbjct: 512 SLENMTKANVLPDLFCYNSLIKGL 535



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 129/269 (47%), Gaps = 11/269 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +L+ G+ K  +   A   L EMI  GV+PN + Y+ L+ G+C+   L          
Sbjct: 352 VYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLG--------- 402

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+ +EM   G  PD  ++  ++  + + +    + + LN M+  GI P   TY  +
Sbjct: 403 -RASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIM 461

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G  ++A  LL EM+  G+ P+A  Y      +      + A +    M +  +
Sbjct: 462 INGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANV 521

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +P++  YN LI     + R++   E +  V+  GL PD  +Y+ LIHG C+ +  ++A 
Sbjct: 522 -LPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKAD 580

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           Q   +M+  GL P   T+  L  G  +S+
Sbjct: 581 QLLQQMLNSGLKPNADTYTDLLEGYFKSN 609



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 136/306 (44%), Gaps = 47/306 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIE--------------------------------- 27
           MY +LI G CKI ++  A + L EMI+                                 
Sbjct: 387 MYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEM 446

Query: 28  --RGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85
              G+ PN  TY +++NG+C+              + A  + +EM   G++P+   ++ +
Sbjct: 447 RNSGILPNAYTYGIMINGLCQNGE----------SKEAGNLLEEMISEGLKPNAFMYAPL 496

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           +  +S+     L+ + L  M +  + P +  Y+S++K L + GRIE+AEE   ++ + G+
Sbjct: 497 IIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGL 556

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P   TY+     Y   ++   A +L +QM   GL  PN  +Y  L+  +   N  + V 
Sbjct: 557 VPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGL-KPNADTYTDLLEGYFKSNDHEKVS 615

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            I   + GSG  PD   Y ++I  L   +  + A     E+ + GL+P    + +L  GL
Sbjct: 616 SILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGL 675

Query: 266 IQ-SDM 270
            + +DM
Sbjct: 676 CKMADM 681



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 132/294 (44%), Gaps = 13/294 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI+G+CK   ++ A++ L +M+  G++PN  TY  LL G  +      S   EK   
Sbjct: 563 YSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFK------SNDHEKV-- 614

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +   M   G +PD   + IV+   SR+   +++   L  +++ G+ P +  YSS++
Sbjct: 615 --SSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLI 672

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    +E A  LL EM + G+ P    YN     +    D + A  ++  +   GL 
Sbjct: 673 SGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGL- 731

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN  +Y  LI        +    +++ D+   G+ PD   Y +L  G  +    ++A  
Sbjct: 732 LPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALF 791

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLR-TWRRLKKKLDEESITFGSEFQN 294
              EM  +G     + F TL RG  +   L+ T + L   +D E +      +N
Sbjct: 792 LTEEMFNRGYAHVSL-FSTLVRGFCKRGRLQETEKLLHVMMDREIVPNAQTVEN 844



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 128/297 (43%), Gaps = 46/297 (15%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
             L+    + + +++  +  G M   G+ P+V TY+  L   C+           +    
Sbjct: 214 NGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCK----------ARDFDA 263

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A+KVF+EMR R    +  ++++++    R+   + +      M + G+ P   TY +++ 
Sbjct: 264 AKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMN 323

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED---- 178
            LC  GR+++A+ LL EM  +G+ P+   Y      +     A  A  +  +M       
Sbjct: 324 GLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQP 383

Query: 179 ----------GLCV--------------------PNMHSYNILI-GMFMALNRMDMVREI 207
                     GLC                     P+  +Y+ L+ G F   ++ D   E+
Sbjct: 384 NKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDK-DGAFEL 442

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            N+++ SG+ P+  +Y ++I+GLC+  + KEA     EMI +GL P    +  L  G
Sbjct: 443 LNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIG 499



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 101/241 (41%), Gaps = 5/241 (2%)

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           ++R A +V   M   G+ P     + +L    RA   +L      FM+  GI P V TYS
Sbjct: 190 SVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYS 249

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           + ++  C     + A+++  EM R     +  TYN              A     +M + 
Sbjct: 250 TFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDY 309

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           GL  P+  +Y  L+       R+   + + +++  SGL P++  Y  L+ G  ++ K  E
Sbjct: 310 GLS-PDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAE 368

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
           A     EMI  G+ P K+ ++ L RGL +   L        KL  E I  G     + + 
Sbjct: 369 AFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGR----ASKLLNEMIKVGHRPDTFTYH 424

Query: 299 P 299
           P
Sbjct: 425 P 425



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 122/275 (44%), Gaps = 32/275 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  +I    +   +++A   L E+ + G+ P++  Y+ L++G+C+ A +      EK +
Sbjct: 632 IYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADM------EKAV 685

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                + DEM   G+EP +  ++ ++  + R+     + +  + +  KG+ P   TY+++
Sbjct: 686 ----GLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTAL 741

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G I DA +L  +M+  G+ P A  YN          D   A+ L  +M   G 
Sbjct: 742 IDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGY 801

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH------GLCEKQ 234
              ++  ++ L+  F    R+    ++ + +    + P+  +   +I        LCE  
Sbjct: 802 A--HVSLFSTLVRGFCKRGRLQETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAH 859

Query: 235 K------WKEACQ--------YFVEMIEKGLLPQK 255
           +       K+A Q         F +MI KGL+P K
Sbjct: 860 RVFAELQQKKASQSSTDRFSLLFTDMINKGLIPPK 894



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/250 (19%), Positives = 94/250 (37%), Gaps = 39/250 (15%)

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           + PD  S  I    +S    P+L LD   + + +   P+   ++ +   LC+      A 
Sbjct: 78  LSPDAVSCLICRRSHSL--HPKLLLDFFYWSRPRIAPPSADAFARLAASLCAASHFPQAN 135

Query: 135 ELLGEMVRNGVCP-------------------------SAETYNCFFKEYRGRKDANGAM 169
            LL +M+     P                         S    +     Y+       A 
Sbjct: 136 GLLHQMILAHPHPPLVLASIQRAIQDSDARSPSPSPSHSTAVLDVLVDTYKKNGSVRTAA 195

Query: 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
           ++   M + GL  P     N L+   +  + M++V ++   ++G+G+ PD+ +Y+  +  
Sbjct: 196 QVVLMMGDLGL-APTRRCCNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEA 254

Query: 230 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
            C+ + +  A + F EM  +     +VT+  +  GL +S  +           EE+  F 
Sbjct: 255 HCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAV-----------EEAFGFK 303

Query: 290 SEFQNYHFKP 299
            E  +Y   P
Sbjct: 304 EEMVDYGLSP 313


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 145/289 (50%), Gaps = 17/289 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+C+  ++      LG+M+E+G++PNV+TY+ +++ +    +          +
Sbjct: 251 VYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGN----------V 300

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  V+ +M VRG  P+V +F+ ++  Y    +   +L+  N M E+G  P V  Y+++
Sbjct: 301 ELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTL 360

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LCS G++ +A  +  +M RNG  P+  TY      +    D  GA +++ +M  +G 
Sbjct: 361 IHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNG- 419

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVK---GSGLGPDLDSYTMLIHGLCEKQKWK 237
           C+PN+  Y     M   L R  M  + W+ ++        P+  ++   I GLC   + +
Sbjct: 420 CIPNVVVYT---SMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVE 476

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            A   F +M + G  P   T+  +  GL++ + ++    L  +++E+ +
Sbjct: 477 CAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGM 525



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 131/281 (46%), Gaps = 11/281 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +TSL+ G+    R+  A      M E G EPNVV YN L++G+C    +           
Sbjct: 322 FTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMG---------- 371

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V  +M   G  P+V+++  ++  +++A     + +  N M   G  P V  Y+S+V
Sbjct: 372 EAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMV 431

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC       A  L+ +M  +   P+  T+N F K          A+ L+ QM++ G C
Sbjct: 432 NVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYG-C 490

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN ++   +  NR+    E+  +++  G+  +L +Y  +  G C   K++EA +
Sbjct: 491 SPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALK 550

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
              +M+  G+ P  +T+ TL         ++T  +L  KL 
Sbjct: 551 LLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLS 591



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 124/270 (45%), Gaps = 20/270 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L+      NR  M E     M   G EPNV TYN+LL  +C+             +
Sbjct: 151 IYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKN----------NRV 200

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGI--CPTVATYS 118
             A K+  EM  +G EPDV S++ V+   S+       L K+   +E  I   P V+ Y+
Sbjct: 201 DGACKLLVEMSNKGCEPDVVSYTTVISSMSK-------LGKVEEARELSIRFQPNVSVYN 253

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++   C   ++++   LLG+MV  G+ P+  TY+       G  +   A+ ++ +M   
Sbjct: 254 ALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVR 313

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G C PN++++  L+  +    R+     IWN +   G  P++ +Y  LIHGLC   K  E
Sbjct: 314 G-CSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGE 372

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           A     +M   G  P   T+  L  G  ++
Sbjct: 373 AVSVSSKMERNGCSPNVSTYGALIDGFAKA 402



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 120/268 (44%), Gaps = 45/268 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTS++   C+ +    A   + +M      PN VT+N  + G+C       S R E  I
Sbjct: 426 VYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLC------CSGRVECAI 479

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                +F +M   G  P++ +++ VL    + ++ + +L+ +  M+EKG+   + TY+++
Sbjct: 480 N----LFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTI 535

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
               C+ G+ E+A +LLG+M+  GV P A TYN     Y  +     A++L  ++   G 
Sbjct: 536 FGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGK 595

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            V                                   P++ +YT L+ G+C +   +EA 
Sbjct: 596 WV-----------------------------------PEVAAYTSLLWGICNQIGVEEAV 620

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            Y  +M+ +G+     T+  L RGL  S
Sbjct: 621 LYLDKMLNEGICLNAATWNALVRGLFNS 648



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 6/209 (2%)

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           E  +   + +  +M++ GI      F  V++ Y R    + +L     ++E G  PTV  
Sbjct: 92  ECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYRIREFGCQPTVKI 151

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+ ++  + S  R +  E +   M R+G  P+  TYN   K        +GA KL  +M 
Sbjct: 152 YNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMS 211

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
             G C P++ SY  +I     L +++  RE+    +     P++  Y  LI+G C + K 
Sbjct: 212 NKG-CEPDVVSYTTVISSMSKLGKVEEARELSIRFQ-----PNVSVYNALINGFCREYKV 265

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           KE      +M+EKG+ P  +T+ T+   L
Sbjct: 266 KEVFLLLGQMVEKGIDPNVITYSTVISSL 294



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 1/165 (0%)

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
           T  TY  +++ L     ++  + LL +M   G+  S + +      YR    A  A+K++
Sbjct: 78  TQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMF 137

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
            +++E G C P +  YN L+   ++ NR  M+  I++++K  G  P++ +Y +L+  LC+
Sbjct: 138 YRIREFG-CQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCK 196

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
             +   AC+  VEM  KG  P  V++ T+   + +   +   R L
Sbjct: 197 NNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEAREL 241


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 140/280 (50%), Gaps = 11/280 (3%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y SLI G  K    +MA     +M   G  P+V TYN+ L+ + +   +   E F+    
Sbjct: 791  YNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKI--KELFD---- 844

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                +++EM  RG +P+  + +IV+    +++    ++D    +      PT  TY  ++
Sbjct: 845  ----LYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLI 900

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              L   GR+E+A++   EM+  G  P+   YN     +  + D   A +L+R+M ++G+ 
Sbjct: 901  DGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGI- 959

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             P++ SY+I++     + ++D     + ++K SGL PDL  Y ++I+GL   Q+ +EA  
Sbjct: 960  RPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALS 1019

Query: 242  YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
             F EM  +G+ P   T+  L   L  + M+    ++ ++L
Sbjct: 1020 LFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEEL 1059



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 148/310 (47%), Gaps = 31/310 (10%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------RASLHPSERF 56
           +  +ID A   L  M + G  P+VVTY VL++ +C               +AS H  +R 
Sbjct: 274 RAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRV 333

Query: 57  -----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFM 105
                         +   ++ + EM   G  PDV +F+I++    +  +   +   L+ M
Sbjct: 334 TYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVM 393

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
           K++G+ P + TY++++  L    R+++A EL   M   G+  +A TY  F   Y    ++
Sbjct: 394 KKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGES 453

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
             A+K + +MK +G+ VPN+ + N  +       R++  +E +N +K  GL PD  +Y +
Sbjct: 454 GKAIKTFEKMKTNGI-VPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNI 512

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML----RTWRRLKK-K 280
           L+    +  +  +A +   EM E G  P+ V   +L   L ++D +    + ++R+K+ K
Sbjct: 513 LMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMK 572

Query: 281 LDEESITFGS 290
           L    +T+ +
Sbjct: 573 LAPTVVTYNT 582



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 132/295 (44%), Gaps = 30/295 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T LI   CK+ ++D A   L  M ++GV PN+ TYN L+ G+ R   L  +     ++ 
Sbjct: 370 FTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSME 429

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +                         A K F++M+  GI P++ + +  L  YS A Q +
Sbjct: 430 SLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASL--YSLAEQGR 487

Query: 97  LSLDK--LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
           L   K   N +K+ G+ P   TY+ +++C    GR++DA +LL EM  NG  P     N 
Sbjct: 488 LEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINS 547

Query: 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
                      + A K++++MKE  L  P + +YN L+       R+     ++  +   
Sbjct: 548 LIDTLYKADRVDEAWKMFQRMKEMKL-APTVVTYNTLLAGLGKEGRVQEATALFKGMIAD 606

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              P+  S+  L+  LC+  +   A +    M E    P  +T+ T+  GLI+ +
Sbjct: 607 DCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKEN 661



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 119/257 (46%), Gaps = 11/257 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI+   K      A +    M+  G++P++ TY+ L+  + +R          + I 
Sbjct: 195 YIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKR----------RDIE 244

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +  EM   G+ P++ +F+I + +  RA +   +   L  M + G  P V TY+ ++
Sbjct: 245 TVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLI 304

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+ G++ +A+EL  +M  +   P   TY     ++    D +   + + +M+ DG  
Sbjct: 305 DALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGY- 363

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ ++ ILI     + ++D      + +K  G+ P+L +Y  LI GL    +  EA +
Sbjct: 364 LPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALE 423

Query: 242 YFVEMIEKGLLPQKVTF 258
            F  M   GL     T+
Sbjct: 424 LFNSMESLGLETTAYTY 440



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 13/226 (5%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y  LI G  K+ R++ A++F  EM++ G  PN   YN+L+NG  ++            + 
Sbjct: 896  YGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGD----------VE 945

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             A ++F  M   GI PD+ S+SI++       +   +L     +K  G+ P +  Y+ ++
Sbjct: 946  TACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMI 1005

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              L    R+E+A  L  EM   G+ P   TYN              A K+Y +++  GL 
Sbjct: 1006 NGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGL- 1064

Query: 182  VPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
             PN+ +YN LI G  M+ N  D    ++  +   G  P+  ++  L
Sbjct: 1065 EPNVFTYNALIRGHSMSGNP-DRAYAVYKKMMVGGCRPNTGTFAQL 1109



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 7/210 (3%)

Query: 55  RFEKTIRNAEKVFDEMRVRGIEPDVTSFSI---VLHVYSRAHQPQLSLDKLNFMKEKGIC 111
           R  + + +   VF+ M+ + I+  + ++     VL++     +  ++L+K   M++ G  
Sbjct: 133 RAHRRVEDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEK---MRKVGFV 189

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
               +Y  ++  L   G   +A ++   MV  G+ PS +TY+        R+D    M L
Sbjct: 190 LNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGL 249

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
            ++M+  GL  PN++++ I I +     ++D    I   +  +G GPD+ +YT+LI  LC
Sbjct: 250 LQEMESLGL-RPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALC 308

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
              K   A + F++M      P +VT+ TL
Sbjct: 309 NAGKLNNAKELFLKMKASSHKPDRVTYITL 338



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 127/338 (37%), Gaps = 80/338 (23%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           SLI    K +R+D A +    M E  + P VVTYN LL G+ +          E  ++ A
Sbjct: 547 SLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGK----------EGRVQEA 596

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV-- 121
             +F  M      P+  SF+ +L    +  +  L+L  L  M E    P V TY++V+  
Sbjct: 597 TALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYG 656

Query: 122 -------------------------KCLCSC-------GRIEDA---------------- 133
                                      LC+        GRIEDA                
Sbjct: 657 LIKENRVNYAFWLFHQMKKVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHAD 716

Query: 134 ----EELLG----------------EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
               E+L+G                 +V N +C          K       A  A  ++ 
Sbjct: 717 GSFWEDLMGGILIEAEIGQSILFAESLVCNTICEDDSVLIPLVKFLCKHGKAVDAYNVFL 776

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           ++ +     P++ +YN LI   +     +M   ++  +K +G  PD+ +Y + +  L + 
Sbjct: 777 KLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKS 836

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
            K KE    + EM+ +G  P  +T   +  GL++S+ L
Sbjct: 837 GKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSL 874



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 8/221 (3%)

Query: 67  FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG-ICPTVATYSSVVKCLC 125
           FD + V+       S   V  V      P  +    N + E   +  T  T + V++ L 
Sbjct: 74  FDVVVVKRKPESTMSSEEVYRVLKSISDPNQAFSFFNSVAEMPRVIHTTETCNYVLEMLR 133

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
           +  R+ED   +   M +  +  S  TY   FK    R     A     +M++ G  V N 
Sbjct: 134 AHRRVEDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGF-VLNG 192

Query: 186 HSYNILIGMFMALNRMDMVRE---IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           +SY   IG+   L +    RE   ++  +   G+ P L +Y+ L+  L +++  +     
Sbjct: 193 YSY---IGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGL 249

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
             EM   GL P   TF    R L ++  +     + K++D+
Sbjct: 250 LQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDD 290


>gi|356546852|ref|XP_003541836.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Glycine max]
          Length = 481

 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 137/259 (52%), Gaps = 16/259 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+  ++ GWC +     A+R   +++    +P++ TY   +  + ++  L          
Sbjct: 209 MWNVILNGWCVLGNSHEAKRVWRDIVASPCKPDIFTYATFIKALTKKGKLG--------- 259

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+F  M  +G +PDV   + ++       +   +L+    M E+G  P VATY+S+
Sbjct: 260 -TALKLFRGMWDKGGKPDVVICNCIIDALCFKKRIPEALEIFCDMSERGCEPNVATYNSL 318

Query: 121 VKCLCSCGRIEDAEELLGEMVRN-GVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +K +C   R++   EL+ EM R  G C P+A TY C+    +  K+     ++  +M+ +
Sbjct: 319 IKYMCKIQRMKKVYELVDEMERKKGSCLPNAVTY-CYL--LKSLKEPGEVCRVLERMERN 375

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G C  N   YN+++ ++M  +  D VR+ W +++ +G GPD  SYT++IH   EK + K+
Sbjct: 376 G-CGMNDDVYNMVLRLYMKWDDGDGVRKTWEEMERNGWGPDRRSYTIMIHENFEKGRVKD 434

Query: 239 ACQYFVEMIEKGLLPQKVT 257
           A +Y  EMI KG++P++ T
Sbjct: 435 AVRYLEEMISKGMVPERRT 453



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 89/199 (44%), Gaps = 1/199 (0%)

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           +V DEM  R    D   F+ ++  +  AH+   ++      KE G+      + +++  L
Sbjct: 123 QVLDEMSKREELLDEAVFATLVRRFVGAHKVDEAIQLFYRRKEFGLELNSEAFRTLLMWL 182

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C    +EDAE L    V+ G+    + +N     +    +++ A +++R +     C P+
Sbjct: 183 CRYKHVEDAEALFHNSVKKGLRADIKMWNVILNGWCVLGNSHEAKRVWRDIVASP-CKPD 241

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y   I       ++    +++  +   G  PD+     +I  LC K++  EA + F 
Sbjct: 242 IFTYATFIKALTKKGKLGTALKLFRGMWDKGGKPDVVICNCIIDALCFKKRIPEALEIFC 301

Query: 245 EMIEKGLLPQKVTFETLYR 263
           +M E+G  P   T+ +L +
Sbjct: 302 DMSERGCEPNVATYNSLIK 320


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 136/274 (49%), Gaps = 17/274 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G C   ++D A   L  M+     PN VTY  L+NG+ ++             R
Sbjct: 296 YNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQG------------R 343

Query: 62  NAEKV--FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           + + V     +  RG   +  ++S ++    +  + + ++     M EKG  P +  YS+
Sbjct: 344 SVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSA 403

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC  G++++A+E+L EMV  G  P+A TY+   K +    ++  A++++++M ++ 
Sbjct: 404 LIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNN 463

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            CVPN   Y++LI       ++     +W  + G GL PD+ +Y+ +IHGLC     +  
Sbjct: 464 -CVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVG 522

Query: 240 CQYFVEMI--EKGLLPQKVTFETLYRGLIQSDML 271
            + F EM+  E    P  VT+  L R L + + +
Sbjct: 523 LKLFNEMLCQESDSQPDVVTYNILLRALCKQNSI 556



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 128/282 (45%), Gaps = 15/282 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +I   CK+  +D A     EM  +  EP+V TY  L++G+C+          E  I 
Sbjct: 191 FNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCK----------EDRID 240

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + DEM++ G  P   +F+++++   +          ++ M  KG  P   TY++++
Sbjct: 241 EAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTII 300

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+++ A  LL  MV +   P+  TY         +  +   + L   ++E G  
Sbjct: 301 NGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHH 360

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N ++Y+ LI       + +    +W  +   G  P++  Y+ LI GLC + K  EA +
Sbjct: 361 A-NEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKE 419

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKK 279
              EM+ KG  P   T+ +L +G  ++      +R W+ + K
Sbjct: 420 ILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAK 461



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 136/311 (43%), Gaps = 46/311 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G CK +RID A   L EM   G  P+ VT+NVL+NG+C++  +         +R
Sbjct: 226 YCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDM---------VR 276

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K+ D M ++G  P+  +++ +++      +   ++  L+ M      P   TY +++
Sbjct: 277 -VTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLI 335

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
             L   GR  D   LL  +   G   +   Y+         + +  AM L+++M E    
Sbjct: 336 NGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQ 395

Query: 178 ----------DGLC--------------------VPNMHSYNILI-GMFMALNRMDMVRE 206
                     DGLC                     PN  +Y+ LI G F   N    +R 
Sbjct: 396 PNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIR- 454

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +W ++  +   P+   Y++LIHGLCE  K +EA   +  M+ +GL P  V + ++  GL 
Sbjct: 455 VWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLC 514

Query: 267 QSDMLRTWRRL 277
            +  +    +L
Sbjct: 515 NAGSVEVGLKL 525



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 127/285 (44%), Gaps = 34/285 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y++LI G C+  ++D A+  L EM+ +G  PN  TY+ L+ G  +  +       +K I
Sbjct: 400 VYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGN------SQKAI 453

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R    V+ EM      P+   +S+++H      + + ++     M  +G+ P V  YSS+
Sbjct: 454 R----VWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSM 509

Query: 121 VKCLCSCGRIEDAEELLGEMV--RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +  LC+ G +E   +L  EM+   +   P   TYN   +    +   + A+ L   M + 
Sbjct: 510 IHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDR 569

Query: 179 GLCVPNMHSYNILIGMFM-ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
           G C P++ + NI +      LN     RE             LD   + +H   ++Q+  
Sbjct: 570 G-CNPDLITCNIFLNALREKLNPPQDGREF------------LDELVVRLH---KRQRIV 613

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGL-----IQSDMLRTWRRL 277
            A +    M++K L P   T+E +   L     +Q+ + + W  L
Sbjct: 614 GAAKIIEVMLQKFLPPNASTWERIIPELCKPKKVQAIIDKCWSSL 658



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 109/252 (43%), Gaps = 13/252 (5%)

Query: 33  NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92
            V ++N +LN + +    H +  F +     +          I P+V SF++V+    + 
Sbjct: 150 TVRSFNSVLNVIIQEGLFHRALEFYECGVGGKT--------NISPNVLSFNLVIKAMCKL 201

Query: 93  HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
                +++    M  +   P V TY +++  LC   RI++A  LL EM   G  PS+ T+
Sbjct: 202 GLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTF 261

Query: 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
           N        + D     KL   M   G CVPN  +YN +I       ++D    + + + 
Sbjct: 262 NVLINGLCKKGDMVRVTKLVDNMFLKG-CVPNEVTYNTIINGLCLKGKLDKAVSLLDRMV 320

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----S 268
            S   P+  +Y  LI+GL ++ +  +       + E+G    +  + TL  GL +     
Sbjct: 321 ASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSE 380

Query: 269 DMLRTWRRLKKK 280
           + +  W+++ +K
Sbjct: 381 EAMGLWKKMVEK 392



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 103/222 (46%), Gaps = 14/222 (6%)

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP-TVATYSSVVKC 123
           +VFD M+         +F +V   Y +AH P+ +++    M ++  C  TV +++SV+  
Sbjct: 101 QVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNV 160

Query: 124 LCSCGRIEDAEEL--LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +   G    A E    G   +  + P+  ++N   K        + A++++R+M     C
Sbjct: 161 IIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQK-C 219

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  L+      +R+D    + ++++  G  P   ++ +LI+GLC+K       +
Sbjct: 220 EPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTK 279

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
               M  KG +P +VT+ T+  GL           LK KLD+
Sbjct: 280 LVDNMFLKGCVPNEVTYNTIINGLC----------LKGKLDK 311


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 144/323 (44%), Gaps = 41/323 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC---------------R 46
           Y +LI G C+  RID A    GEM +    P++  Y  L+ G+C               +
Sbjct: 48  YATLIEGLCEAGRIDEAVELFGEMDQ----PDMHMYAALVKGLCNAERGEEGLLMLRRMK 103

Query: 47  RASLHPSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                PS R           E+  + AE++  EM  +G+ P V + + V++ Y +  +  
Sbjct: 104 ELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMS 163

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L  L  MK +G  P V TY+++V+  C+ G++  A  LL +M   GV P A TYN   
Sbjct: 164 DALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLI 223

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           +          A +L R M+ DGL + + ++YN LI       R D    +++ ++  G+
Sbjct: 224 RGQCIDGHIESAFRLLRLMEGDGL-IADQYTYNALINALCKDGRTDQACSLFDSLETRGI 282

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  ++  LI+GLC+  K   A ++  +M+  G  P   T+ +    L           
Sbjct: 283 KPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLC---------- 332

Query: 277 LKKKLDEESITFGSEFQNYHFKP 299
            K K  +E ++F  E      KP
Sbjct: 333 -KMKGSQEGLSFIGEMLQKDVKP 354



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 140/300 (46%), Gaps = 23/300 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           + SLI G+C+ N++D+A     +M  RG   +VV+Y  L+ G+C                
Sbjct: 13  FNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMD 72

Query: 47  RASLHPSERFEKTIRNAEK------VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLD 100
           +  +H      K + NAE+      +   M+  G  P   +++ V+    R  + + + +
Sbjct: 73  QPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEE 132

Query: 101 KLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160
            L  M EKG+ P V T ++V+   C  GR+ DA  +L  M   G  P+  TYN   + + 
Sbjct: 133 MLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFC 192

Query: 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
                + AM L  +M+  G+  P+  +YN+LI        ++    +   ++G GL  D 
Sbjct: 193 NEGKVHKAMTLLNKMRACGV-NPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQ 251

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR-TWRRLKK 279
            +Y  LI+ LC+  +  +AC  F  +  +G+ P  VTF +L  GL +S      W+ L+K
Sbjct: 252 YTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEK 311



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 117/262 (44%), Gaps = 11/262 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T++I  +CK  R+  A R L  M  RG +PNV TYN L+ G C    +H           
Sbjct: 150 TAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVH----------K 199

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  + ++MR  G+ PD  ++++++         + +   L  M+  G+     TY++++ 
Sbjct: 200 AMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALIN 259

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  GR + A  L   +   G+ P+A T+N           A+ A K   +M   G C 
Sbjct: 260 ALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAG-CT 318

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+ ++Y+  I     +           ++    + P   +YT++IH L +++ +    + 
Sbjct: 319 PDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVART 378

Query: 243 FVEMIEKGLLPQKVTFETLYRG 264
           + EM+  G  P  VT+ T  R 
Sbjct: 379 WGEMVSSGCNPDVVTYTTSMRA 400



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 132/342 (38%), Gaps = 78/342 (22%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI   CK  R D A      +  RG++PN VT+N L+NG+C+      + +F + + 
Sbjct: 254 YNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMV 313

Query: 62  NAEKVFD-------------------------EMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +A    D                         EM  + ++P   +++IV+H   +     
Sbjct: 314 SAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYG 373

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           L       M   G  P V TY++ ++  C  GR+ +AE +L EM +NGV      YN   
Sbjct: 374 LVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLM 433

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI------------------------ 192
             +      + A+ + +QM      VPN  +Y IL+                        
Sbjct: 434 DGHASIGQTDHAVSILKQMTSVA-SVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAI 492

Query: 193 ------GMFMAL----------------------NRMDMVREIWNDVKGSGLGPDLDSYT 224
                 G+F  +                       R +    + + +K   +  + D YT
Sbjct: 493 ELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYT 552

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
            L+   C+ +++ +A      MI+ G +PQ ++++ L  GLI
Sbjct: 553 ALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLI 594



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 122/291 (41%), Gaps = 26/291 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G+C   ++  A   L +M   GV P+ VTYN+L+ G C    +  + R  + + 
Sbjct: 184 YNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLME 243

Query: 62  -------------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     A  +FD +  RGI+P+  +F+ +++   ++ +  
Sbjct: 244 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKAD 303

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           ++   L  M   G  P   TYSS ++ LC     ++    +GEM++  V PS   Y    
Sbjct: 304 IAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVI 363

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
            +    ++     + + +M   G C P++ +Y   +  +    R++    +  ++  +G+
Sbjct: 364 HKLLKERNYGLVARTWGEMVSSG-CNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGV 422

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
             D  +Y  L+ G     +   A     +M     +P + T+  L R L++
Sbjct: 423 TVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVR 473



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 98/223 (43%), Gaps = 34/223 (15%)

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           G  PD  +F+ ++  Y R +Q  ++ D  + M  +G    V +Y+++++ LC  GRI++A
Sbjct: 5   GWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEA 64

Query: 134 EELLGEM----------VRNGVC---------------------PSAETYNCFFKEYRGR 162
            EL GEM          +  G+C                     PS   Y     ++R R
Sbjct: 65  VELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVV-DFRCR 123

Query: 163 -KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
            + A  A ++ ++M E GL  P + +   +I  +    RM     +   +K  G  P++ 
Sbjct: 124 ERKAKEAEEMLQEMFEKGL-APCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVW 182

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
           +Y  L+ G C + K  +A     +M   G+ P  VT+  L RG
Sbjct: 183 TYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRG 225



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 100/240 (41%), Gaps = 8/240 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR------ASLHPSER 55
           Y +L+ G   I + D A   L +M      PN  TY +LL  + R         L P+  
Sbjct: 429 YNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGV 488

Query: 56  FEKT-IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV 114
           ++   + +   +FD M+     P+  ++S +L  +S   + + +   ++ MKE  I    
Sbjct: 489 WKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNE 548

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
             Y+++V C C   R  DA  L+  M+++G  P   +Y             + A +++  
Sbjct: 549 DIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMN 608

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
            +      P+   + ++I   +     D+ RE+   ++     P   +Y ML   L +++
Sbjct: 609 SRWKDYS-PDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTEELPDRE 667


>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 576

 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 136/293 (46%), Gaps = 31/293 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI        ID A R L EM+ RG++P++ TYNV++ G+C+R  +  +  F   + 
Sbjct: 219 YTILIEATIIHGSIDDAMRLLDEMMSRGLQPDMYTYNVIVRGMCKRGLVDRAFEFVSNLN 278

Query: 62  N----------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
                                   E++  +M V+G EP++ ++S+++    R  +   ++
Sbjct: 279 TTPSLNLYNLLLKGLLNEGRWEAGERLMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAV 338

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           D L  MKEKG+ P    Y  ++   C  G+++ A   + +M+  G  P    YN      
Sbjct: 339 DVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDMISAGWLPDIVNYNTIMGSL 398

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA----LNRMDMVREIWNDVKGSG 215
             +  A+ A+ ++++++E G C PN  SYN + G   +    +  + M+ E+ ++    G
Sbjct: 399 CKKGRADEALNIFKKLEEVG-CPPNASSYNTMFGALWSSGDKIRALTMILEMLSN----G 453

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           + PD  +Y  LI  LC      EA    V+M      P  +++  +  GL ++
Sbjct: 454 VDPDRITYNSLISSLCRDGMVDEAIGLLVDMERTEWQPTVISYNIVLLGLCKA 506



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 152/320 (47%), Gaps = 36/320 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           Y ++I G+C+ +R D A R +  M  RG  P+VVTYN+L+  +C R  L  + +      
Sbjct: 149 YNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTYNILIGSLCARGKLDLALKVMDQLL 208

Query: 56  -------------------FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                 +I +A ++ DEM  RG++PD+ ++++++    R    +
Sbjct: 209 EDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMSRGLQPDMYTYNVIV----RGMCKR 264

Query: 97  LSLDK-LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +D+   F+      P++  Y+ ++K L + GR E  E L+ +M+  G  P+  TY+  
Sbjct: 265 GLVDRAFEFVSNLNTTPSLNLYNLLLKGLLNEGRWEAGERLMSDMIVKGCEPNIVTYSVL 324

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                    A  A+ + R MKE GL  P+ + Y+ LI  F    ++D+     +D+  +G
Sbjct: 325 ISSLCRDGKAGEAVDVLRVMKEKGLN-PDAYCYDPLISAFCKEGKVDLAIGFVDDMISAG 383

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS-DMLRT- 273
             PD+ +Y  ++  LC+K +  EA   F ++ E G  P   ++ T++  L  S D +R  
Sbjct: 384 WLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGCPPNASSYNTMFGALWSSGDKIRAL 443

Query: 274 ---WRRLKKKLDEESITFGS 290
                 L   +D + IT+ S
Sbjct: 444 TMILEMLSNGVDPDRITYNS 463



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 133/281 (47%), Gaps = 15/281 (5%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           R +  ER + +MI +G EPN+VTY+VL++ +CR          +     A  V   M+ +
Sbjct: 298 RWEAGERLMSDMIVKGCEPNIVTYSVLISSLCR----------DGKAGEAVDVLRVMKEK 347

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           G+ PD   +  ++  + +  +  L++  ++ M   G  P +  Y++++  LC  GR ++A
Sbjct: 348 GLNPDAYCYDPLISAFCKEGKVDLAIGFVDDMISAGWLPDIVNYNTIMGSLCKKGRADEA 407

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             +  ++   G  P+A +YN  F       D   A+ +  +M  +G+  P+  +YN LI 
Sbjct: 408 LNIFKKLEEVGCPPNASSYNTMFGALWSSGDKIRALTMILEMLSNGV-DPDRITYNSLIS 466

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
                  +D    +  D++ +   P + SY +++ GLC+  +  +A +    M++ G  P
Sbjct: 467 SLCRDGMVDEAIGLLVDMERTEWQPTVISYNIVLLGLCKAHRIVDAIEVLAVMVDNGCQP 526

Query: 254 QKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
            + T+  L  G+  +     WR    +L +  ++  +  Q+
Sbjct: 527 NETTYTLLVEGVGYAG----WRSYAVELAKSLVSMNAISQD 563



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 133/313 (42%), Gaps = 44/313 (14%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T LI G     R + A R + E++E+  +P+   YN +++G CR      S+RF+     
Sbjct: 116 TKLIKGLFTSKRTEKAVRVM-EILEQYGDPDSFAYNAVISGFCR------SDRFDA---- 164

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A +V   M+ RG  PDV +++I++       +  L+L  ++ + E    PTV TY+ +++
Sbjct: 165 ANRVILRMKYRGFSPDVVTYNILIGSLCARGKLDLALKVMDQLLEDNCNPTVITYTILIE 224

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDA--------------- 165
                G I+DA  LL EM+  G+ P   TYN   +    RG  D                
Sbjct: 225 ATIIHGSIDDAMRLLDEMMSRGLQPDMYTYNVIVRGMCKRGLVDRAFEFVSNLNTTPSLN 284

Query: 166 ---------------NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
                              +L   M   G C PN+ +Y++LI       +     ++   
Sbjct: 285 LYNLLLKGLLNEGRWEAGERLMSDMIVKG-CEPNIVTYSVLISSLCRDGKAGEAVDVLRV 343

Query: 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           +K  GL PD   Y  LI   C++ K   A  +  +MI  G LP  V + T+   L +   
Sbjct: 344 MKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDMISAGWLPDIVNYNTIMGSLCKKGR 403

Query: 271 LRTWRRLKKKLDE 283
                 + KKL+E
Sbjct: 404 ADEALNIFKKLEE 416



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 2/143 (1%)

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC  G+  +A   L +MV+ G  P         K     K    A+++   +++ G   P
Sbjct: 87  LCKTGKYTEALYFLEQMVKRGYKPDVILCTKLIKGLFTSKRTEKAVRVMEILEQYG--DP 144

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           +  +YN +I  F   +R D    +   +K  G  PD+ +Y +LI  LC + K   A +  
Sbjct: 145 DSFAYNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTYNILIGSLCARGKLDLALKVM 204

Query: 244 VEMIEKGLLPQKVTFETLYRGLI 266
            +++E    P  +T+  L    I
Sbjct: 205 DQLLEDNCNPTVITYTILIEATI 227


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 136/274 (49%), Gaps = 17/274 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G C   ++D A   L  M+     PN VTY  L+NG+ ++             R
Sbjct: 280 YNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQG------------R 327

Query: 62  NAEKV--FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           + + V     +  RG   +  ++S ++    +  + + ++     M EKG  P +  YS+
Sbjct: 328 SVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSA 387

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC  G++++A+E+L EMV  G  P+A TY+   K +    ++  A++++++M ++ 
Sbjct: 388 LIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNN 447

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            CVPN   Y++LI       ++     +W  + G GL PD+ +Y+ +IHGLC     +  
Sbjct: 448 -CVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVG 506

Query: 240 CQYFVEMI--EKGLLPQKVTFETLYRGLIQSDML 271
            + F EM+  E    P  VT+  L R L + + +
Sbjct: 507 LKLFNEMLCQESDSQPDVVTYNILLRALCKQNSI 540



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 128/282 (45%), Gaps = 15/282 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +I   CK+  +D A     EM  +  EP+V TY  L++G+C+          E  I 
Sbjct: 175 FNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCK----------EDRID 224

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + DEM++ G  P   +F+++++   +          ++ M  KG  P   TY++++
Sbjct: 225 EAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTII 284

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+++ A  LL  MV +   P+  TY         +  +   + L   ++E G  
Sbjct: 285 NGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGH- 343

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N ++Y+ LI       + +    +W  +   G  P++  Y+ LI GLC + K  EA +
Sbjct: 344 HANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKE 403

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRRLKK 279
              EM+ KG  P   T+ +L +G  ++      +R W+ + K
Sbjct: 404 ILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAK 445



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 136/311 (43%), Gaps = 46/311 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G CK +RID A   L EM   G  P+ VT+NVL+NG+C++  +         +R
Sbjct: 210 YCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDM---------VR 260

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K+ D M ++G  P+  +++ +++      +   ++  L+ M      P   TY +++
Sbjct: 261 -VTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLI 319

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
             L   GR  D   LL  +   G   +   Y+         + +  AM L+++M E    
Sbjct: 320 NGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQ 379

Query: 178 ----------DGLC--------------------VPNMHSYNILI-GMFMALNRMDMVRE 206
                     DGLC                     PN  +Y+ LI G F   N    +R 
Sbjct: 380 PNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIR- 438

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +W ++  +   P+   Y++LIHGLCE  K +EA   +  M+ +GL P  V + ++  GL 
Sbjct: 439 VWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLC 498

Query: 267 QSDMLRTWRRL 277
            +  +    +L
Sbjct: 499 NAGSVEVGLKL 509



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 127/285 (44%), Gaps = 34/285 (11%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y++LI G C+  ++D A+  L EM+ +G  PN  TY+ L+ G  +  +       +K I
Sbjct: 384 VYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGN------SQKAI 437

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R    V+ EM      P+   +S+++H      + + ++     M  +G+ P V  YSS+
Sbjct: 438 R----VWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSM 493

Query: 121 VKCLCSCGRIEDAEELLGEMV--RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +  LC+ G +E   +L  EM+   +   P   TYN   +    +   + A+ L   M + 
Sbjct: 494 IHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDR 553

Query: 179 GLCVPNMHSYNILIGMFM-ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
           G C P++ + NI +      LN     RE             LD   + +H   ++Q+  
Sbjct: 554 G-CNPDLITCNIFLNALREKLNPPQDGREF------------LDELVVRLH---KRQRIV 597

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGL-----IQSDMLRTWRRL 277
            A +    M++K L P   T+E +   L     +Q+ + + W  L
Sbjct: 598 GAAKIIEVMLQKFLPPNASTWERIIPELCKPKKVQAIIDKCWSSL 642



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 14/268 (5%)

Query: 18  AERFLGEMI-ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIE 76
           A    G M+ E      V ++N +LN + +    H +  F +     +          I 
Sbjct: 118 AIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKT--------NIS 169

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           P+V SF++V+    +      +++    M  +   P V TY +++  LC   RI++A  L
Sbjct: 170 PNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLL 229

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
           L EM   G  PS+ T+N        + D     KL   M   G CVPN  +YN +I    
Sbjct: 230 LDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKG-CVPNEVTYNTIINGLC 288

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
              ++D    + + +  S   P+  +Y  LI+GL ++ +  +       + E+G    + 
Sbjct: 289 LKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEY 348

Query: 257 TFETLYRGLIQ----SDMLRTWRRLKKK 280
            + TL  GL +     + +  W+++ +K
Sbjct: 349 AYSTLISGLFKEEKSEEAMGLWKKMVEK 376



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 103/222 (46%), Gaps = 14/222 (6%)

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP-TVATYSSVVKC 123
           +VFD M+         +F +V   Y +AH P+ +++    M ++  C  TV +++SV+  
Sbjct: 85  QVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNV 144

Query: 124 LCSCGRIEDAEEL--LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +   G    A E    G   +  + P+  ++N   K        + A++++R+M     C
Sbjct: 145 IIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQK-C 203

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  L+      +R+D    + ++++  G  P   ++ +LI+GLC+K       +
Sbjct: 204 EPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTK 263

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
               M  KG +P +VT+ T+  GL           LK KLD+
Sbjct: 264 LVDNMFLKGCVPNEVTYNTIINGLC----------LKGKLDK 295


>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 525

 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 144/313 (46%), Gaps = 49/313 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+G C   R + A   LG M+ +G+ PNV T+NVL++  C+          E  I 
Sbjct: 186 YNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCK----------EGKIS 235

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +   M   G+EPDV +++ V+  +    Q   ++     M  KG+ P V TYSS++
Sbjct: 236 RAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLI 295

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKE-- 177
              C    I  A  +L EMV NG+     T++     +   GR +A  A++L+  M E  
Sbjct: 296 HGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEA--AIELFCTMHEHH 353

Query: 178 ------------DGLCVPNMHS--------------------YNILIGMFMALNRMDMVR 205
                       DGL     HS                    YNI++    +  + +  R
Sbjct: 354 QLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFGKFNDAR 413

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           E+++ +   G+  D+ +YT +I GLC++    +A    ++M E G  P + T+  L RGL
Sbjct: 414 ELFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTYNVLVRGL 473

Query: 266 IQS-DMLRTWRRL 277
           +Q  D+ R+ + L
Sbjct: 474 LQRYDISRSTKYL 486



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 137/293 (46%), Gaps = 29/293 (9%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T +I   C +         LG M + GVEP VVT+  L+NG+C   ++  + RF  ++ +
Sbjct: 46  TIVINCLCHLKHTVFGFSVLGAMFKIGVEPTVVTFATLINGLCAEGNVGAAARFADSLED 105

Query: 63  AE----------------KVFD-----------EMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                             KV D           E R RG +  + ++S ++    +    
Sbjct: 106 MGYESNSYTHGTIINGLCKVGDTAGAISYLEKIEGRNRGFDL-LIAYSTIMDSLCKDGML 164

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
            L+L+  + M  KGI P +  Y+S++  LCS GR  +A  LLG M+R G+ P+ +T+N  
Sbjct: 165 CLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVL 224

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +      + A  +   M   G+  P++ +YN +I     L++M+   +++  +   G
Sbjct: 225 VDNFCKEGKISRAKTIMCFMVHVGV-EPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKG 283

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           L P++ +Y+ LIHG C+ +   +A     EM+  GL    VT+ TL  G  ++
Sbjct: 284 LLPNVVTYSSLIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKA 336



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 136/285 (47%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++++   CK   + +A  F   M  +G++P++V YN L++G+C         R+ +   
Sbjct: 151 YSTIMDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFG------RWNE--- 201

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M  +GI P+V +F++++  + +  +   +   + FM   G+ P V TY+SV+
Sbjct: 202 -ATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKISRAKTIMCFMVHVGVEPDVVTYNSVI 260

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   ++ DA ++   M+  G+ P+  TY+     +   ++ N A+ +  +M  +GL 
Sbjct: 261 SGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHGWCKTRNINKAIFVLDEMVNNGLN 320

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++ +++ LIG F    R +   E++  +      P+L +  +++ GL + Q   EA  
Sbjct: 321 L-DVVTWSTLIGGFCKAGRPEAAIELFCTMHEHHQLPNLQTCAIILDGLFKCQFHSEAIS 379

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            F +M +  L    VT+  +  G+         R L   L  + I
Sbjct: 380 LFRKMEKMNLELNIVTYNIVLDGMCSFGKFNDARELFSCLPSKGI 424



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 105/221 (47%), Gaps = 26/221 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA----------SLH 51
           Y+SLI+GWCK   I+ A   L EM+  G+  +VVT++ L+ G C+            ++H
Sbjct: 291 YSSLIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAAIELFCTMH 350

Query: 52  -----PSERFEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                P+ +    I +          A  +F +M    +E ++ +++IVL       +  
Sbjct: 351 EHHQLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFGKFN 410

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + +  + +  KGI   V  Y++++K LC  G ++DAE+LL +M  NG  P+  TYN   
Sbjct: 411 DARELFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTYNVLV 470

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
           +    R D + + K    MK  GL   +  +  +LI  F A
Sbjct: 471 RGLLQRYDISRSTKYLMLMKGKGLS-ADATTTELLISYFSA 510



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 32/204 (15%)

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG----- 128
           G++PDV + +IV++              L  M + G+ PTV T+++++  LC+ G     
Sbjct: 37  GVKPDVHTLTIVINCLCHLKHTVFGFSVLGAMFKIGVEPTVVTFATLINGLCAEGNVGAA 96

Query: 129 -RIEDAEELLG--------EMVRNGVCPSAETYNC--FFKEYRGRKDANGAMKLYRQMKE 177
            R  D+ E +G          + NG+C   +T     + ++  GR      +  Y  +  
Sbjct: 97  ARFADSLEDMGYESNSYTHGTIINGLCKVGDTAGAISYLEKIEGRNRGFDLLIAYSTIM- 155

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
           D LC   M        + +ALN        ++ +   G+ PDL +Y  LIHGLC   +W 
Sbjct: 156 DSLCKDGM--------LCLALN-------FFSGMTCKGIQPDLVAYNSLIHGLCSFGRWN 200

Query: 238 EACQYFVEMIEKGLLPQKVTFETL 261
           EA      M+ KG++P   TF  L
Sbjct: 201 EATTLLGNMMRKGIMPNVQTFNVL 224



 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 71/151 (47%), Gaps = 11/151 (7%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           +M +  +E N+VTYN++L+G+C     +          +A ++F  +  +GI+ DV +++
Sbjct: 383 KMEKMNLELNIVTYNIVLDGMCSFGKFN----------DARELFSCLPSKGIQIDVVAYT 432

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            ++    +      + D L  M+E G  P   TY+ +V+ L     I  + + L  M   
Sbjct: 433 TMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTYNVLVRGLLQRYDISRSTKYLMLMKGK 492

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
           G+   A T       +   K+ N A++++ Q
Sbjct: 493 GLSADATTTELLISYFSANKE-NSALQVFLQ 522


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 132/294 (44%), Gaps = 30/294 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           YT+LI G CK+ R+D A     +M+  G   PN  TYN L++G+C++  L  +       
Sbjct: 99  YTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEA 158

Query: 61  RN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           R                          A   F +M   G  P + SF+ ++    RA + 
Sbjct: 159 RKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRL 218

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +L+  N M ++   P + TYS V+  LC   ++++A++LL  MV  G  P    Y   
Sbjct: 219 ADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPL 278

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +      + A+ L R+M   G C+P++ +Y ++I     + R+D   EI+ ++  + 
Sbjct: 279 VLGFSAAGRLDSALGLLRRMVSQG-CIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANK 337

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
             P++ +Y+ LI G C   +  E  +   EM  +   P  VT+ T+  GL   D
Sbjct: 338 CSPNVVTYSALIGGYCRASRVDEGGKVMREMACR---PNVVTYNTMIWGLSMVD 388



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 115/231 (49%), Gaps = 18/231 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + ++I G C+  R+  A     EMI+R   PN+VTY+V+++G+C+   L           
Sbjct: 205 FNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLD---------- 254

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++ D M   G  PD+ +++ ++  +S A +   +L  L  M  +G  P V TY+ V+
Sbjct: 255 EAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVI 314

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDG 179
             LC  GR++DA E+  E+V N   P+  TY+     Y    R D  G  K+ R+M    
Sbjct: 315 DKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGG--KVMREMA--- 369

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
            C PN+ +YN +I     ++R +    ++ ++   G  PD  +Y  L   L
Sbjct: 370 -CRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRAL 419



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 130/282 (46%), Gaps = 13/282 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTI 60
           Y  LI G+C  + +D A   L EM   G++ N  T +++L G+CR   +  + E F+ ++
Sbjct: 28  YNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASL 87

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSS 119
             A            +PDV S++ +++   +  +   + D    M   G C P   TY++
Sbjct: 88  ELAHA----------QPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNA 137

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +V  LC   R++ A  ++ E  +    P   TYN            + A+  + QM E+G
Sbjct: 138 LVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEG 197

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
             VP + S+N +I       R+    E++N++      P+L +Y+++I GLC+  +  EA
Sbjct: 198 Y-VPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEA 256

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            Q    M+ +G  P  V +  L  G   +  L +   L +++
Sbjct: 257 QQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRM 298



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 119/252 (47%), Gaps = 13/252 (5%)

Query: 35  VTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ 94
           VTYNVL+ G C  + L            A  +  EM V G++ +  + SI+L    R  +
Sbjct: 26  VTYNVLIRGFCNASDLDA----------AFSLLREMDVEGMQCNDRTTSIILQGLCRCGR 75

Query: 95  PQLSLDKLNFMKEKGIC-PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC-PSAETY 152
              +L+  +   E     P V +Y++++  LC  GR++ A +L  +MV  G C P+A TY
Sbjct: 76  VAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTY 135

Query: 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
           N        +   + A  +  + ++     P++ +YN L+     L R+D     +  + 
Sbjct: 136 NALVDGLCKQDRLDAARAVITEARKRDF-APDVVTYNTLMAALFQLGRVDEALATFTQMT 194

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
             G  P L S+  +I GLC  ++  +A + F EMI++   P  VT+  +  GL +SD L 
Sbjct: 195 EEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLD 254

Query: 273 TWRRLKKKLDEE 284
             ++L  ++  E
Sbjct: 255 EAQQLLDRMVSE 266



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 18/155 (11%)

Query: 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM------FMALNRM 201
           S+ TYN   + +    D + A  L R+M  +G+   +  +  IL G+        AL   
Sbjct: 24  SSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHF 83

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-GLLPQKVTFET 260
           D   E+ +        PD+ SYT LI+GLC+  +   A   F +M+   G  P   T+  
Sbjct: 84  DASLELAH------AQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNA 137

Query: 261 LYRGLIQSDMLRTWRRL-----KKKLDEESITFGS 290
           L  GL + D L   R +     K+    + +T+ +
Sbjct: 138 LVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNT 172


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 134/268 (50%), Gaps = 13/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I   C+ +R  +A   +G+M++ G EP+VVT + L+NG C+             + 
Sbjct: 107 YNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQ----------GNRVF 156

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  +M   G  PDV  ++ ++    +      +++  + M+  G+     TY+S+V
Sbjct: 157 DAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLV 216

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  DA  L+ +MV   + P+  T+      +      + AMKLY +M     C
Sbjct: 217 AGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRR--C 274

Query: 182 V-PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           V P++ +YN LI       R+D  +++ + +   G  PD+ +Y  LI+G C+ ++  E  
Sbjct: 275 VDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGT 334

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           + F EM ++GL+   +T+ T+ +G  Q+
Sbjct: 335 KLFREMAQRGLVGDTITYNTIIQGYFQA 362



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 160/344 (46%), Gaps = 64/344 (18%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTIR 61
           +SLI G+C+ NR+  A   + +M E G  P+VV YN +++G C+   ++ + E F++  R
Sbjct: 143 SSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMER 202

Query: 62  N------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
           +                        A ++  +M +R I P+V +F+ V+ V+ +  +   
Sbjct: 203 DGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSE 262

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           ++     M  + + P V TY+S++  LC  GR+++A+++L  MV  G  P   TYN    
Sbjct: 263 AMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLIN 322

Query: 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN-------- 209
            +   K  +   KL+R+M + GL V +  +YN +I  +    R D  +EI++        
Sbjct: 323 GFCKSKRVDEGTKLFREMAQRGL-VGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNI 381

Query: 210 ------------------------DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
                                   +++ S +  D+ +Y ++IHG+C+    ++A   F  
Sbjct: 382 RTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRS 441

Query: 246 MIEKGLLPQKVTFETLYRGLIQSDMLRTWRR---LKKKLDEESI 286
           +  KGL P  V++ T+  G  +    R W +   L +K+ E+ +
Sbjct: 442 LSCKGLKPDVVSYTTMISGFCRK---RQWDKSDLLYRKMQEDGL 482



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 135/272 (49%), Gaps = 16/272 (5%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G+  ++ +YN+++N +CR        RF      A  V  +M   G EPDV + S +++ 
Sbjct: 99  GIGHDLYSYNIVINCLCR------CSRFVI----ALSVVGKMMKFGYEPDVVTVSSLING 148

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           + + ++   ++D ++ M+E G  P V  Y++++   C  G + DA EL   M R+GV   
Sbjct: 149 FCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRAD 208

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
           A TYN            + A +L R M    + VPN+ ++  +I +F+   +     +++
Sbjct: 209 AVTYNSLVAGLCCSGRWSDAARLMRDMVMRDI-VPNVITFTAVIDVFVKEGKFSEAMKLY 267

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            ++    + PD+ +Y  LI+GLC   +  EA Q    M+ KG LP  VT+ TL  G  +S
Sbjct: 268 EEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKS 327

Query: 269 DMLRTWRRLKKKLDE-----ESITFGSEFQNY 295
             +    +L +++ +     ++IT+ +  Q Y
Sbjct: 328 KRVDEGTKLFREMAQRGLVGDTITYNTIIQGY 359



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 42/211 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G C   R+D A++ L  M+ +G  P+VVTYN L+NG C+           K + 
Sbjct: 282 YNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCK----------SKRVD 331

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK-----------GI 110
              K+F EM  RG+  D  +++ ++  Y +A +P  + +  + M  +           G+
Sbjct: 332 EGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGL 391

Query: 111 CPT---------------------VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
           C                       + TY+ V+  +C  G +EDA +L   +   G+ P  
Sbjct: 392 CMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDV 451

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
            +Y      +  ++  + +  LYR+M+EDGL
Sbjct: 452 VSYTTMISGFCRKRQWDKSDLLYRKMQEDGL 482



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 106/219 (48%), Gaps = 6/219 (2%)

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           P +  FS VL   +++    L +   + M+  GI   + +Y+ V+ CLC C R   A  +
Sbjct: 67  PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 126

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
           +G+M++ G  P   T +     +        A+ L  +M+E G   P++  YN +I    
Sbjct: 127 VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGF-RPDVVIYNTIIDGSC 185

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
            +  ++   E+++ ++  G+  D  +Y  L+ GLC   +W +A +   +M+ + ++P  +
Sbjct: 186 KIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVI 245

Query: 257 TFETLYRGLIQ----SDMLRTWRRLKKK-LDEESITFGS 290
           TF  +    ++    S+ ++ +  + ++ +D +  T+ S
Sbjct: 246 TFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNS 284



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 51/102 (50%)

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++  ++ ++         D+V  +++ ++  G+G DL SY ++I+ LC   ++  A  
Sbjct: 66  LPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALS 125

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
              +M++ G  P  VT  +L  G  Q + +     L  K++E
Sbjct: 126 VVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEE 167


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 139/320 (43%), Gaps = 65/320 (20%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y +LI G CK  +++   +  GEM+++G+EP+  TYN+L++G+CR   L  +        
Sbjct: 596 YNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECK 655

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  I   EK+F E+  + +E +   ++ ++  Y R     
Sbjct: 656 SRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTV 715

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    + M+ KGI PT ATYSS++  +C+ GR+EDA+ L+ EM + G+           
Sbjct: 716 EAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGL----------- 764

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                                    +PN+  Y  LIG +  L +MD V  +  ++    +
Sbjct: 765 -------------------------LPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDI 799

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  +YT++I G  +    K A +   EM+ KG++P  VT+  L  G  +   +     
Sbjct: 800 HPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEE--- 856

Query: 277 LKKKLDEESITFGSEFQNYH 296
             K L E+ + F S     H
Sbjct: 857 -GKLLAEDGVGFNSPLFLIH 875



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 136/274 (49%), Gaps = 11/274 (4%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +LI+G CK   +  A R L +M+ERG   + +TYN L++G C+          E  +   
Sbjct: 563 ALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCK----------EGKVEEG 612

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            K+  EM  +GIEPD  ++++++H   R  +   +++  N  K + + P V TY  ++  
Sbjct: 613 FKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDG 672

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C   +IE+ E+L  E++   +  ++  YN   + Y    +   A KL+  M+  G+  P
Sbjct: 673 YCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGI-PP 731

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
              +Y+ LI     + RM+  + + ++++  GL P++  YT LI G C+  +  +     
Sbjct: 732 TTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVL 791

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            EM    + P K+T+  +  G  +S  ++T  +L
Sbjct: 792 QEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKL 825



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 133/285 (46%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G CK   +D A RF  +M++ GV   ++TY+VL+NG+ +       E+F +   
Sbjct: 351 YNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKL------EKFNE--- 401

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V  E   +G  P+   ++ ++  Y +      +L     M  KGI P   T +S++
Sbjct: 402 -ANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSII 460

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G++E AE +L EM+  G   +   +               A++  R+M    + 
Sbjct: 461 QGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNM- 519

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN      L+G      +     E+W  +   G G +L +   LIHGLC+    +EA +
Sbjct: 520 RPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVR 579

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              +M+E+G +  K+T+ TL  G  +   +    +L+ ++ ++ I
Sbjct: 580 LLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGI 624



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 139/302 (46%), Gaps = 11/302 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+CK+  +  A R  G+M+ +G+ PN VT N ++ G C+   +          
Sbjct: 420 VYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQM---------- 469

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE + +EM  RG   +  +F+ ++H      + + +L  L  M  + + P     +++
Sbjct: 470 EQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTL 529

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  LC  G+  DA EL   ++  G   +  T N          +   A++L ++M E G 
Sbjct: 530 VGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGF 589

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +  + +YN LI       +++   ++  ++   G+ PD  +Y +LIHG+C   K  EA 
Sbjct: 590 VLDKI-TYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAV 648

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
             + E   + L+P   T+  +  G  ++D +    +L  +L  +++   S   N   + Y
Sbjct: 649 NLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAY 708

Query: 301 RR 302
            R
Sbjct: 709 CR 710



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 131/286 (45%), Gaps = 24/286 (8%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T L+    K N ++ +  ++ E + +GV P+V  ++  +N  C+             + +
Sbjct: 283 TFLLSSLVKANELEKS-YWVFETMRQGVSPDVYLFSTAINAFCKGGK----------VED 331

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK----GICPTVATYS 118
           A ++F +M   G+ P+V +++ ++H   +      +LD+    KEK    G+  T+ TYS
Sbjct: 332 AIQLFFDMEKLGVSPNVVTYNNLIHGLCK----HGNLDEAFRFKEKMVKDGVNATLITYS 387

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++  L    +  +A  +L E +  G  P+   YN     Y    +   A+++   M   
Sbjct: 388 VLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSK 447

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  PN  + N +I  F  + +M+    I  ++   G   +  ++T +IH LC   +++ 
Sbjct: 448 GIN-PNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFES 506

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLKKK 280
           A ++  EM+ + + P      TL  GL +    SD +  W RL +K
Sbjct: 507 ALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEK 552



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 111/244 (45%), Gaps = 12/244 (4%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP---QLSLDKLNFMKEKGICPTVAT 116
           I +A    +E+   G+   V +  +++HVY    +    + ++    F+  KG+ PTV T
Sbjct: 224 IASAMADLNEVGESGVA--VAAVDLLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKT 281

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
            + ++  L     +E +  +  E +R GV P    ++     +        A++L+  M+
Sbjct: 282 CTFLLSSLVKANELEKSYWVF-ETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDME 340

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           + G+  PN+ +YN LI        +D        +   G+   L +Y++LI+GL + +K+
Sbjct: 341 KLGVS-PNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKF 399

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK-----KKLDEESITFGSE 291
            EA     E +EKG  P +V + TL  G  +   L    R++     K ++  S+T  S 
Sbjct: 400 NEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSI 459

Query: 292 FQNY 295
            Q +
Sbjct: 460 IQGF 463



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 10/153 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI  +C+      A +   +M  +G+ P   TY+ L++G+C    +          
Sbjct: 700 VYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRM---------- 749

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A+ + DEMR  G+ P+V  ++ ++  Y +  Q    ++ L  M    I P   TY+ +
Sbjct: 750 EDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVM 809

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           +      G ++ A +LL EMV  G+ P   TYN
Sbjct: 810 IDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYN 842


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 149/329 (45%), Gaps = 61/329 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK--- 58
           Y SLI G+CK   +  A    G++   G+ P V+TYN+L++G CR   L  + R ++   
Sbjct: 373 YNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMT 432

Query: 59  -------------------TIRNAEKV---FDEMRVRGIEPDVTSFS------IVLHVYS 90
                               +RN   V   FDEM  +G+EPD  +++      + +   +
Sbjct: 433 EEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAIT 492

Query: 91  RAHQPQ-------LSLDKLNF-MKEKGICPT---------------------VATYSSVV 121
            A Q +       +S D + + +   G+C T                       TY+ ++
Sbjct: 493 NAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLI 552

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR+ +A+ +   MV +G+ PS  TY  F   Y  R +   A   +R+M E+G+ 
Sbjct: 553 HAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGV- 611

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +YN+L+     + R +   + ++++   GL P+  +YT+LI G C++  W  A +
Sbjct: 612 EPNEVTYNVLMHALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIR 671

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
            + EM +KG+ P   T   L++G  +  M
Sbjct: 672 LYCEMHQKGIHPDHCTHNALFKGFGEGHM 700



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 27/297 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIER--GVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           Y +L+  +CK  R+D A   L +M  R  G  PN VTYNV++NG+ R+  L  + +    
Sbjct: 232 YNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDI 291

Query: 60  IRNAEK------------------------VFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           +R ++K                        +  EM   GI P V +++ ++    +    
Sbjct: 292 MRLSKKASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNA 351

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + +  K + M+ KG+ P + TY+S++   C  G ++ A  L G++ R G+ P+  TYN  
Sbjct: 352 EAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNIL 411

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              Y    D  GA +L  +M E+  C+P++ +Y IL+     +  + MVR  ++++   G
Sbjct: 412 IDGYCRLGDLEGARRLKEEMTEED-CLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKG 470

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
           L PD  +Y   I           A Q   EM+ +G+    VT+  L  GL ++  L+
Sbjct: 471 LEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLK 527



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 126/270 (46%), Gaps = 13/270 (4%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           R D       +M++ GVEP++ TYN LL+  C+   +  +    K +        E R  
Sbjct: 209 RWDDMRAVYSDMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDM--------EARAA 260

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133
           G  P+  ++++V++  +R  + + +   ++ M+      +  TY+ ++  L +   +E A
Sbjct: 261 GCLPNDVTYNVVINGLARKGELEKAAQLVDIMRLSKKA-SAFTYNPLITGLLARDFVEKA 319

Query: 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             LL EM   G+ P+  TYN          +A  A   + +M+  GL +P++ +YN LI 
Sbjct: 320 GALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGL-LPDLITYNSLIN 378

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
            +     +     ++ D+K +GLGP + +Y +LI G C     + A +   EM E+  LP
Sbjct: 379 GYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLP 438

Query: 254 QKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
              T+  L  G   S M+R    ++   DE
Sbjct: 439 DVCTYTILMNG---SCMVRNLAMVRIFFDE 465



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 127/263 (48%), Gaps = 14/263 (5%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           EM   GV P V   N +L  V R A+     R++    +   V+ +M   G+EP + +++
Sbjct: 184 EMARHGVAPFVKECNCVLR-VLRDAA-----RWD----DMRAVYSDMLQLGVEPSIFTYN 233

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEK--GICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
            +L  + +A +   ++  L  M+ +  G  P   TY+ V+  L   G +E A +L+ +++
Sbjct: 234 TLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLV-DIM 292

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
           R     SA TYN        R     A  L  +M+ +G+ VP + +YN LI         
Sbjct: 293 RLSKKASAFTYNPLITGLLARDFVEKAGALLLEMENEGI-VPTVVTYNTLIDGLFKTGNA 351

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +  +  +++++  GL PDL +Y  LI+G C+    K+A   F ++   GL P  +T+  L
Sbjct: 352 EAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNIL 411

Query: 262 YRGLIQSDMLRTWRRLKKKLDEE 284
             G  +   L   RRLK+++ EE
Sbjct: 412 IDGYCRLGDLEGARRLKEEMTEE 434



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 106/238 (44%), Gaps = 26/238 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-----ERF 56
           Y + I     I  I  A +   EM+ RG+  + VTYNVL++G+C+  SL  +     +  
Sbjct: 478 YNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMV 537

Query: 57  EKTIR--------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
              +R                     A+ +FD M   G+ P V +++I +H Y R     
Sbjct: 538 TDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLY 597

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           L+      M E+G+ P   TY+ ++  LC  GR E A +   EM+  G+ P+  TY    
Sbjct: 598 LAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLI 657

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
                  +   A++LY +M + G+  P+  ++N L   F   +  D V+ + N V G+
Sbjct: 658 DGSCKEGNWVHAIRLYCEMHQKGI-HPDHCTHNALFKGFGEGHMYDAVQYLENVVLGT 714


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 145/319 (45%), Gaps = 31/319 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL-HPSERFEKTI 60
           +T  I    +  +ID A      M + G  P++VTY VL++ +C    L +  E F K  
Sbjct: 265 FTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMK 324

Query: 61  RNAEK------------------------VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            N  K                         + +M   G  PDV +F+I++ V  +A    
Sbjct: 325 ANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFD 384

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +    + M+++GI P + TY++++  L   GRIEDA +LLG M   GV P+A TYN F 
Sbjct: 385 EAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFI 444

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +    +   A++ + +MK  G+ VPN+ + N  +     + R+   + ++N ++ +GL
Sbjct: 445 DYFGKSGETGKAVETFEKMKAKGI-VPNIVACNASLYSLAEMGRLREAKTMFNGLRENGL 503

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWR 275
            PD  +Y M++    +  +  EA     EMI  G  P  +   +L   L ++  +   W+
Sbjct: 504 APDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQ 563

Query: 276 RLKK----KLDEESITFGS 290
              +    KL    +T+ +
Sbjct: 564 MFDRMKDMKLSPTVVTYNT 582



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 135/280 (48%), Gaps = 11/280 (3%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y  LI    +++  + A     +M   G  P+  T+N+LL       S   +E FE    
Sbjct: 791  YNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL--AVHGKSGKITELFE---- 844

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                ++ EM  R  +PD  +++IV+   ++++    +LD    +      PT  TY  ++
Sbjct: 845  ----LYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLI 900

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              L   GR+E+A  L  EM   G  P+   +N     Y    D   A +L+++M  +G+ 
Sbjct: 901  DGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGI- 959

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             P++ SY IL+       R+D     +N++K +GL PD  +Y  +I+GL + Q+ +EA  
Sbjct: 960  RPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALA 1019

Query: 242  YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
             + EM  +G++P   T+ +L   L  + M+   +R+ ++L
Sbjct: 1020 LYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEEL 1059



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 134/280 (47%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T L+   CK    D A      M ++G+ PN+ TYN L+ G+ R             I 
Sbjct: 370 FTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGR----------IE 419

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+   M   G++P   +++I +  + ++ +   +++    MK KGI P +   ++ +
Sbjct: 420 DALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASL 479

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+ +A+ +   +  NG+ P + TYN   K Y      + A+ L  +M  +G C
Sbjct: 480 YSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNG-C 538

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++   N LI       R+D   ++++ +K   L P + +Y  L+ GL ++ + ++A +
Sbjct: 539 EPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIE 598

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            F  MIEK   P  ++F TL     ++D +    ++  K+
Sbjct: 599 LFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKM 638



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 136/291 (46%), Gaps = 27/291 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKT- 59
           Y +LI G  +  RI+ A + LG M   GV+P   TYN+ ++   +      + E FEK  
Sbjct: 405 YNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMK 464

Query: 60  -----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  +R A+ +F+ +R  G+ PD  ++++++  YS+  Q  
Sbjct: 465 AKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVD 524

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +++ L+ M   G  P V   +S++  L   GR+++A ++   M    + P+  TYN   
Sbjct: 525 EAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLL 584

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      A++L+  M E   C PN  S+N L+  F   + +++  ++++ +     
Sbjct: 585 SGLGKEGRVQKAIELFESMIEKK-CSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDC 643

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            PD+ +Y  +I+GL ++ K   A  +F   ++K + P  VT  TL  GL++
Sbjct: 644 KPDVLTYNTVIYGLIKENKVNHAF-WFFHQLKKSMHPDHVTICTLLPGLVK 693



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 122/260 (46%), Gaps = 11/260 (4%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y  +I    K N +D A  F  +++     P   TY  L++G+ +        R E+ +R
Sbjct: 861  YNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVG------RLEEAMR 914

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                +F+EM   G +P+   F+I+++ Y +    + +      M  +GI P + +Y+ +V
Sbjct: 915  ----LFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILV 970

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             CLC  GR+++A     E+   G+ P    YN         +    A+ LY +M+  G+ 
Sbjct: 971  DCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGI- 1029

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            VP++++YN L+        ++  + ++ +++ +GL PD+ +Y  LI G    +  + A  
Sbjct: 1030 VPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYT 1089

Query: 242  YFVEMIEKGLLPQKVTFETL 261
             +  M+  G  P   T+  L
Sbjct: 1090 VYKNMMVDGCNPNIGTYAQL 1109



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 134/315 (42%), Gaps = 50/315 (15%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKV---FDEMRVRGIEPDVTS 81
           M+  G++P++ TY+ L+  + ++             R++E V     EM   G+ P+V +
Sbjct: 218 MVSEGLKPSLKTYSALMVALGKK-------------RDSEMVMVLLKEMEDLGLRPNVYT 264

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
           F+I + V  RA +   + +    M ++G  P + TY+ ++  LC+ G++E+A+EL  +M 
Sbjct: 265 FTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMK 324

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG--------------LC------ 181
            NG  P    Y     ++    D +   + + QM+ DG              LC      
Sbjct: 325 ANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFD 384

Query: 182 --------------VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
                         +PN+H+YN LI   +   R++   ++   ++  G+ P   +Y + I
Sbjct: 385 EAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFI 444

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
               +  +  +A + F +M  KG++P  V        L +   LR  + +   L E  + 
Sbjct: 445 DYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLA 504

Query: 288 FGSEFQNYHFKPYRR 302
             S   N   K Y +
Sbjct: 505 PDSVTYNMMMKCYSK 519



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 3/208 (1%)

Query: 55  RFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS-RAHQPQLSLDKLNFMKEKGICPT 113
           R    + +   VF+ M+ + I  D+ ++  +    S R    Q++   LN M++ G    
Sbjct: 133 RVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMT-TVLNKMRKAGFVLN 191

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
             +Y+ ++  L   G   +A E+   MV  G+ PS +TY+        ++D+   M L +
Sbjct: 192 AYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLK 251

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           +M++ GL  PN++++ I I +     ++D   EI+  +   G GPDL +YT+LI  LC  
Sbjct: 252 EMEDLGL-RPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNA 310

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETL 261
            + + A + FV+M   G  P +V + TL
Sbjct: 311 GQLENAKELFVKMKANGHKPDQVIYITL 338



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 139/330 (42%), Gaps = 53/330 (16%)

Query: 11   KINRIDMAERFLGEMIERGVEPNVV-TYNVLLNGVCRRAS-LHPSERF---EKTIRNAEK 65
            ++NR    +   G ++E  ++  ++    ++LNG+CR  S L P  R     K    A +
Sbjct: 714  RVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQ 773

Query: 66   VFDEMRVR-GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +FD+   + GI P + S++ ++      H  + + D    MK  G  P   T++ ++   
Sbjct: 774  IFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVH 833

Query: 125  CSCGRIEDAEELLGEMVRNGVCPSAETYNC----------------FF-----KEYRGRK 163
               G+I +  EL  EM+     P A TYN                 FF      ++R   
Sbjct: 834  GKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTP 893

Query: 164  DANG--------------AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
               G              AM+L+ +M + G C PN   +NILI  +  +   +   +++ 
Sbjct: 894  RTYGPLIDGLAKVGRLEEAMRLFEEMSDYG-CKPNCAIFNILINGYGKIGDTETACQLFK 952

Query: 210  DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
             +   G+ PDL SYT+L+  LC   +  EA  YF E+   GL P  + +  +  GL +S 
Sbjct: 953  RMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQ 1012

Query: 270  MLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
             +           EE++   +E +N    P
Sbjct: 1013 RM-----------EEALALYNEMRNRGIVP 1031



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 5/227 (2%)

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE-KGICPTVATY 117
            ++N E+V   M V+G      S   VL V      P  +L     + E   +  T  T 
Sbjct: 69  ALQNPEQV---MVVKGKTEIRVSEDEVLGVLKSMTDPIRALSYFYSISEFPTVLHTTETC 125

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           + +++ L    ++ED   +   M +  +    +TY   FK    R        +  +M++
Sbjct: 126 NFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRK 185

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G  V N +SYN LI + +         E++  +   GL P L +Y+ L+  L +K+  +
Sbjct: 186 AGF-VLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSE 244

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
                  EM + GL P   TF    R L ++  +     + +++D+E
Sbjct: 245 MVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDE 291


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 135/285 (47%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI  +C+  ++ +A +   E+ +RGV  N VTYN+L+ G+CR+            + 
Sbjct: 215 YNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQ----------VS 264

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE + + M+   I P   +F++++       Q   +L  L  +K  G+CPT+ TY+ ++
Sbjct: 265 KAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILI 324

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G      EL+ EM   G+ PS  TY      +    D   A +++  MK  GL 
Sbjct: 325 SGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGL- 383

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+ H+Y +LI        M    +++  +    L P+   Y  +I+G C++    +A +
Sbjct: 384 VPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALK 443

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +  EM++ G+ P   ++ +  + L +       +RL K++ E  +
Sbjct: 444 FLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGL 488



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 132/264 (50%), Gaps = 11/264 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT +I G+ K            +M   GV PN+ TYN L+   CR   L          
Sbjct: 179 IYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSL-------- 230

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A KVFDE+  RG+  +  +++I++    R  Q   +   L  MK   I PT  T++ +
Sbjct: 231 --AFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNML 288

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC+ G+++ A   L ++   G+CP+  TYN     +    +++   +L R+M++ G+
Sbjct: 289 MDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGI 348

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+  +Y IL+  F+  + ++   E+++ +K  GL PD  +Y +LIHGLC K    EA 
Sbjct: 349 S-PSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEAS 407

Query: 241 QYFVEMIEKGLLPQKVTFETLYRG 264
           + +  M+E  L P  V + T+  G
Sbjct: 408 KLYKSMVEMHLQPNDVIYNTMING 431



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 138/283 (48%), Gaps = 12/283 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI   C+   ID A+     M + G+  N   Y +++NG  ++   +  + FE   
Sbjct: 144 IYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKG--YKKDGFE--- 198

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                ++ +M++ G+ P++ +++ ++  Y R  +  L+    + + ++G+     TY+ +
Sbjct: 199 -----LYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNIL 253

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G++  AE LL  M R  + P+  T+N            + A+    ++K  GL
Sbjct: 254 IGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGL 313

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P + +YNILI  F  +    +V E+  +++  G+ P   +YT+L++        ++A 
Sbjct: 314 C-PTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAY 372

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL-IQSDMLRTWRRLKKKLD 282
           + F  M   GL+P + T+  L  GL I+ +M+   +  K  ++
Sbjct: 373 EMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVE 415



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 118/277 (42%), Gaps = 12/277 (4%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           K   +D    F  E + R  + +V ++ + +   C   ++  S+ FE        +  +M
Sbjct: 85  KSGNLDRTWGFFTEYLGR-TQFDVYSFWITIKAFCENGNV--SKGFE--------LLAQM 133

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
              G+ P+V  ++I++    R      +    + M + G+      Y+ ++      G  
Sbjct: 134 ETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYK 193

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           +D  EL  +M   GV P+  TYN    EY      + A K++ ++ + G+   N  +YNI
Sbjct: 194 KDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVAC-NAVTYNI 252

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           LIG      ++     +   +K + + P   ++ ML+ GLC   +  +A  Y  ++   G
Sbjct: 253 LIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIG 312

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           L P  VT+  L  G  +         L +++++  I+
Sbjct: 313 LCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGIS 349



 Score = 40.4 bits (93), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 10/77 (12%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I G+CK      A +FL EM++ GV PNV +Y   +  +C+           K+I
Sbjct: 424 IYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDG---------KSI 474

Query: 61  RNAEKVFDEMRVRGIEP 77
             A+++  EM   G++P
Sbjct: 475 E-AKRLLKEMTEAGLKP 490


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 134/268 (50%), Gaps = 13/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I   C+ +R  +A   +G+M++ G EP+VVT + L+NG C+             + 
Sbjct: 48  YNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQ----------GNRVF 97

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  +M   G  PDV  ++ ++    +      +++  + M+  G+     TY+S+V
Sbjct: 98  DAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLV 157

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  DA  L+ +MV   + P+  T+      +      + AMKLY +M     C
Sbjct: 158 AGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRR--C 215

Query: 182 V-PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           V P++ +YN LI       R+D  +++ + +   G  PD+ +Y  LI+G C+ ++  E  
Sbjct: 216 VDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGT 275

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           + F EM ++GL+   +T+ T+ +G  Q+
Sbjct: 276 KLFREMAQRGLVGDTITYNTIIQGYFQA 303



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 160/344 (46%), Gaps = 64/344 (18%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTIR 61
           +SLI G+C+ NR+  A   + +M E G  P+VV YN +++G C+   ++ + E F++  R
Sbjct: 84  SSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMER 143

Query: 62  N------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
           +                        A ++  +M +R I P+V +F+ V+ V+ +  +   
Sbjct: 144 DGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSE 203

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           ++     M  + + P V TY+S++  LC  GR+++A+++L  MV  G  P   TYN    
Sbjct: 204 AMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLIN 263

Query: 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN-------- 209
            +   K  +   KL+R+M + GL V +  +YN +I  +    R D  +EI++        
Sbjct: 264 GFCKSKRVDEGTKLFREMAQRGL-VGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNI 322

Query: 210 ------------------------DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
                                   +++ S +  D+ +Y ++IHG+C+    ++A   F  
Sbjct: 323 RTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRS 382

Query: 246 MIEKGLLPQKVTFETLYRGLIQSDMLRTWRR---LKKKLDEESI 286
           +  KGL P  V++ T+  G  +    R W +   L +K+ E+ +
Sbjct: 383 LSCKGLKPDVVSYTTMISGFCRK---RQWDKSDLLYRKMQEDGL 423



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 135/272 (49%), Gaps = 16/272 (5%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G+  ++ +YN+++N +CR        RF      A  V  +M   G EPDV + S +++ 
Sbjct: 40  GIGHDLYSYNIVINCLCR------CSRFVI----ALSVVGKMMKFGYEPDVVTVSSLING 89

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           + + ++   ++D ++ M+E G  P V  Y++++   C  G + DA EL   M R+GV   
Sbjct: 90  FCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRAD 149

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
           A TYN            + A +L R M    + VPN+ ++  +I +F+   +     +++
Sbjct: 150 AVTYNSLVAGLCCSGRWSDAARLMRDMVMRDI-VPNVITFTAVIDVFVKEGKFSEAMKLY 208

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            ++    + PD+ +Y  LI+GLC   +  EA Q    M+ KG LP  VT+ TL  G  +S
Sbjct: 209 EEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKS 268

Query: 269 DMLRTWRRLKKKLDE-----ESITFGSEFQNY 295
             +    +L +++ +     ++IT+ +  Q Y
Sbjct: 269 KRVDEGTKLFREMAQRGLVGDTITYNTIIQGY 300



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 42/211 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G C   R+D A++ L  M+ +G  P+VVTYN L+NG C+           K + 
Sbjct: 223 YNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCK----------SKRVD 272

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK-----------GI 110
              K+F EM  RG+  D  +++ ++  Y +A +P  + +  + M  +           G+
Sbjct: 273 EGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGL 332

Query: 111 CPT---------------------VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
           C                       + TY+ V+  +C  G +EDA +L   +   G+ P  
Sbjct: 333 CMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDV 392

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
            +Y      +  ++  + +  LYR+M+EDGL
Sbjct: 393 VSYTTMISGFCRKRQWDKSDLLYRKMQEDGL 423



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 106/219 (48%), Gaps = 6/219 (2%)

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           P +  FS VL   +++    L +   + M+  GI   + +Y+ V+ CLC C R   A  +
Sbjct: 8   PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 67

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
           +G+M++ G  P   T +     +        A+ L  +M+E G   P++  YN +I    
Sbjct: 68  VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGF-RPDVVIYNTIIDGSC 126

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
            +  ++   E+++ ++  G+  D  +Y  L+ GLC   +W +A +   +M+ + ++P  +
Sbjct: 127 KIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVI 186

Query: 257 TFETLYRGLIQ----SDMLRTWRRLKKK-LDEESITFGS 290
           TF  +    ++    S+ ++ +  + ++ +D +  T+ S
Sbjct: 187 TFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNS 225



 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 51/102 (50%)

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++  ++ ++         D+V  +++ ++  G+G DL SY ++I+ LC   ++  A  
Sbjct: 7   LPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALS 66

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
              +M++ G  P  VT  +L  G  Q + +     L  K++E
Sbjct: 67  VVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEE 108


>gi|357122825|ref|XP_003563115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Brachypodium distachyon]
          Length = 410

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 133/263 (50%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI+G+    R +       +M   G+EPN+ TYN+L+   CR      +  FE+   
Sbjct: 76  FTALIHGYFIHGRREKGLALFEKMRIGGIEPNLYTYNILVGEWCR------TGEFER--- 126

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F+EM  +GI  +V S++ ++    R  + + +   L  M+ +GI P+V T++ +V
Sbjct: 127 -ARLLFEEMPAKGITRNVVSYNTLIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLV 185

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G++ +A     +M   G  PSA TYN     +   +D   A + +  MKE GL 
Sbjct: 186 DGYGKAGKMSNALHFSNQMRMAGYQPSAVTYNALIAGFCRARDMIRANRAFSDMKERGLA 245

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P   +Y ILI  F   N MD   E++  ++ +GL  D+ +Y +L+H LC +   K+A +
Sbjct: 246 -PTKVTYTILIDAFARENDMDKAFEMFAGMEKAGLEVDVRTYGVLVHALCMEGNMKDARK 304

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F  + EKGL    V ++ L  G
Sbjct: 305 LFQSIGEKGLQVGNVIYDMLIYG 327



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 144/300 (48%), Gaps = 11/300 (3%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T+L++G+C+   +  A+R    M   G+ PN VT+  L++G      +H   R EK +  
Sbjct: 42  TALVHGYCRSGDVAEAQRVFDVMPRLGLTPNEVTFTALIHGYF----IHG--RREKGL-- 93

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
              +F++MR+ GIEP++ +++I++  + R  + + +      M  KGI   V +Y++++ 
Sbjct: 94  --ALFEKMRIGGIEPNLYTYNILVGEWCRTGEFERARLLFEEMPAKGITRNVVSYNTLIA 151

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC   +++DA +LL  M R G+ PS  T+N     Y      + A+    QM+  G   
Sbjct: 152 GLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGY-Q 210

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+  +YN LI  F     M      ++D+K  GL P   +YT+LI     +    +A + 
Sbjct: 211 PSAVTYNALIAGFCRARDMIRANRAFSDMKERGLAPTKVTYTILIDAFARENDMDKAFEM 270

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR 302
           F  M + GL     T+  L   L     ++  R+L + + E+ +  G+   +     Y R
Sbjct: 271 FAGMEKAGLEVDVRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQVGNVIYDMLIYGYGR 330



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 122/257 (47%), Gaps = 11/257 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+  WC+    + A     EM  +G+  NVV+YN L+ G+CR           + ++
Sbjct: 111 YNILVGEWCRTGEFERARLLFEEMPAKGITRNVVSYNTLIAGLCR----------YRKMK 160

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++ + MR  GI P V +F++++  Y +A +   +L   N M+  G  P+  TY++++
Sbjct: 161 DATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGYQPSAVTYNALI 220

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    +  A     +M   G+ P+  TY      +    D + A +++  M++ GL 
Sbjct: 221 AGFCRARDMIRANRAFSDMKERGLAPTKVTYTILIDAFARENDMDKAFEMFAGMEKAGLE 280

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V ++ +Y +L+        M   R+++  +   GL      Y MLI+G   +    +A +
Sbjct: 281 V-DVRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQVGNVIYDMLIYGYGREGSSYKAMK 339

Query: 242 YFVEMIEKGLLPQKVTF 258
             +EM +KG +P   ++
Sbjct: 340 LIMEMRKKGFVPNSASY 356



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 11/191 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ G+ K  ++  A  F  +M   G +P+ VTYN L+ G CR           + + 
Sbjct: 181 FNLLVDGYGKAGKMSNALHFSNQMRMAGYQPSAVTYNALIAGFCR----------ARDMI 230

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A + F +M+ RG+ P   +++I++  ++R +    + +    M++ G+   V TY  +V
Sbjct: 231 RANRAFSDMKERGLAPTKVTYTILIDAFARENDMDKAFEMFAGMEKAGLEVDVRTYGVLV 290

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G ++DA +L   +   G+      Y+     Y     +  AMKL  +M++ G  
Sbjct: 291 HALCMEGNMKDARKLFQSIGEKGLQVGNVIYDMLIYGYGREGSSYKAMKLIMEMRKKGF- 349

Query: 182 VPNMHSYNILI 192
           VPN  SY + I
Sbjct: 350 VPNSASYGLTI 360


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 131/264 (49%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++   CK  +  +A   L +M ER ++ + V Y+++++G+C+  SL           
Sbjct: 215 YGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLD---------- 264

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA  +F+EM ++G + D+  ++ ++  +  A +       L  M ++ I P V  +S+++
Sbjct: 265 NAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALI 324

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            C    G++ +AEEL  EM++ G+ P   TY      +      + A  +   M   G C
Sbjct: 325 DCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG-C 383

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ ++NILI  +   N +D   E++  +   G+  D  +Y  LI G CE  K + A +
Sbjct: 384 GPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKE 443

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F EM+ + + P  V+++ L  GL
Sbjct: 444 LFQEMVSRRVRPDIVSYKILLDGL 467



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 137/284 (48%), Gaps = 11/284 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+LI G+C   R D   + L +MI+R + P+VV ++ L++   +          E  +
Sbjct: 284 IYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVK----------EGKL 333

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R AE++  EM  RGI PD  +++ ++  + + +Q   +   L+ M  KG  P + T++ +
Sbjct: 334 REAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNIL 393

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C    I+D  EL  +M   GV     TYN   + +        A +L+++M    +
Sbjct: 394 INGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRV 453

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ SY IL+         +   EI+  ++ S +  D+  Y ++IHG+C   K  +A 
Sbjct: 454 -RPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAW 512

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
             F  +  KG+ P   T+  +  GL +   L     L +K++E+
Sbjct: 513 DLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEED 556



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 134/263 (50%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++LI  + K  ++  AE    EMI+RG+ P+ VTY  L++G C+          E  + 
Sbjct: 320 FSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK----------ENQLD 369

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D M  +G  P++ +F+I+++ Y +A+     L+    M  +G+     TY++++
Sbjct: 370 KANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLI 429

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G++E A+EL  EMV   V P   +Y           +   A++++ ++++  + 
Sbjct: 430 QGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKME 489

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++  YNI+I      +++D   +++  +   G+ PD+ +Y ++I GLC+K    EA  
Sbjct: 490 L-DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADL 548

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F +M E G  P   T+  L R 
Sbjct: 549 LFRKMEEDGHSPNGCTYNILIRA 571



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 143/301 (47%), Gaps = 20/301 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++LI G C   R+  A   +  M+E G +P ++T N L+NG+C              + 
Sbjct: 145 FSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLC----------LNGKVS 194

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  + D M   G +P+  ++  VL V  ++ Q  L+++ L  M+E+ I      YS ++
Sbjct: 195 DAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIII 254

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE--YRGRKDANGAMKLYRQMKEDG 179
             LC  G +++A  L  EM   G       Y    +   Y GR D +GA KL R M +  
Sbjct: 255 DGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWD-DGA-KLLRDMIKRK 312

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  P++ +++ LI  F+   ++    E+  ++   G+ PD  +YT LI G C++ +  +A
Sbjct: 313 I-TPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKA 371

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD-----EESITFGSEFQN 294
                 M+ KG  P   TF  L  G  +++++     L +K+       +++T+ +  Q 
Sbjct: 372 NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQG 431

Query: 295 Y 295
           +
Sbjct: 432 F 432



 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 129/271 (47%), Gaps = 30/271 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           YTSLI G+CK N++D A   L  M+ +G  PN+ T+N+L+NG C+               
Sbjct: 355 YTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMS 414

Query: 47  -RASLHPSERFEKTIRN---------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            R  +  +  +   I+          A+++F EM  R + PD+ S+ I+L       +P+
Sbjct: 415 LRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPE 474

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+    +++  +   +  Y+ ++  +C+  +++DA +L   +   GV P  +TYN   
Sbjct: 475 KALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMI 534

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                +   + A  L+R+M+EDG   PN  +YNILI   +         ++  ++K  G 
Sbjct: 535 GGLCKKGSLSEADLLFRKMEEDGHS-PNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGF 593

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
             D  +  M++  L + +  K     F++M+
Sbjct: 594 SVDASTVKMVVDMLSDGRLKKS----FLDML 620



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 129/286 (45%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ L     +  + D+      +M  +G+  N+ T ++++N  CR   L           
Sbjct: 75  FSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSL--------- 125

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A     ++   G EPD  +FS +++      +   +L+ ++ M E G  PT+ T +++V
Sbjct: 126 -AFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALV 184

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++ DA  L+  MV  G  P+  TY    K          AM+L R+M+E  + 
Sbjct: 185 NGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIK 244

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +  +  Y+I+I        +D    ++N+++  G   D+  YT LI G C   +W +  +
Sbjct: 245 LDAVK-YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAK 303

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              +MI++ + P  V F  L    ++   LR    L K++ +  I+
Sbjct: 304 LLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGIS 349



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 36/229 (15%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +F EM      P +  FS +  V +R  Q  L LD    M+ KGI   + T S ++
Sbjct: 55  DAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMI 114

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            C C C ++  A   +G++++ G  P   T++                        +GLC
Sbjct: 115 NCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLI---------------------NGLC 153

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +    S         AL  +D + E+       G  P L +   L++GLC   K  +A  
Sbjct: 154 LEGRVSE--------ALELVDRMVEM-------GHKPTLITLNALVNGLCLNGKVSDAVL 198

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
               M+E G  P +VT+  + + + +S        L +K++E  I   +
Sbjct: 199 LIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDA 247


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 148/311 (47%), Gaps = 27/311 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-----F 56
           Y ++I G+CK  +++  + +L EMI +G++PNV TY   ++G CR   +  +ER      
Sbjct: 515 YNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEML 574

Query: 57  EKTIR-----------------NAEKVFDEMRV---RGIEPDVTSFSIVLHVYSRAHQPQ 96
           +  I                  N  K F + R    +G+ PDV + S+++H  S+  + Q
Sbjct: 575 DSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQ 634

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++   + + +KG+ P V TY+S++  LC  G ++ A EL  +M + G+ P+  TYN   
Sbjct: 635 EAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALI 694

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                  +   A +L+  + E GL   N  +Y+ +I  +     +    ++++ +K  G+
Sbjct: 695 NGLCKLGEIAKARELFDGIPEKGL-ARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGV 753

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD   Y  LI G C+    ++A   F+ M+E+G +     F  L  G  +   L    +
Sbjct: 754 PPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEG-IASTPAFNALIDGFFKLGKLIEAYQ 812

Query: 277 LKKKLDEESIT 287
           L + + +  IT
Sbjct: 813 LVEDMVDNHIT 823



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 145/334 (43%), Gaps = 59/334 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI  +C++ +++  +  L +M E+G  PN+VTY+V++ G+CR   +  +   ++++ 
Sbjct: 235 YTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMA 294

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           N                          + + DEM   G++PD  +++ +++ + +     
Sbjct: 295 NKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIG 354

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +      M  + I     TY +++  LC  G +E AE+L  EM   G+ P  +TYNC  
Sbjct: 355 GAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLI 414

Query: 157 KEYRGRKDANGAMKLYRQMKE--------------DGLC--------------------V 182
           + Y   ++   A +L  ++K+              +GLC                     
Sbjct: 415 EGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLK 474

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN+  Y  ++   +   R +   +I   +K  GL PD+  Y  +I G C+  K +E   Y
Sbjct: 475 PNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSY 534

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            VEMI KGL P   T+     G  ++  ++   R
Sbjct: 535 LVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAER 568



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 149/319 (46%), Gaps = 31/319 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G CKI  ++ AE    EM   G++P++ TYN L+ G  +  ++  +      I+
Sbjct: 375 YYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIK 434

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     A ++F EM   G++P++  ++ ++    +  + +
Sbjct: 435 KENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFE 494

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++  L  MK++G+ P V  Y++V+   C  G++E+ +  L EM+  G+ P+  TY  F 
Sbjct: 495 EAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFI 554

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y    +   A + + +M + G+  PN      LI  +            +  +   G+
Sbjct: 555 HGYCRAGEMQAAERSFIEMLDSGI-APNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGV 613

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD+ ++++LIHGL +  K +EA   F E+++KGL+P   T+ +L   L +   L+    
Sbjct: 614 LPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFE 673

Query: 277 L-----KKKLDEESITFGS 290
           L     KK ++   +T+ +
Sbjct: 674 LHDDMCKKGINPNIVTYNA 692



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 142/300 (47%), Gaps = 16/300 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M  +++ G C    +  A     EMI  G++PN+V Y  ++ G+ +        RFE+ I
Sbjct: 444 MCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEG------RFEEAI 497

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               K+   M+ +G+ PDV  ++ V+  + +A + +     L  M  KG+ P V TY + 
Sbjct: 498 ----KILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAF 553

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G ++ AE    EM+ +G+ P+          Y    +   A   +R M + G+
Sbjct: 554 IHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGV 613

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +P++ ++++LI       ++     +++++   GL PD+ +YT LI  LC++   K A 
Sbjct: 614 -LPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAF 672

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL-----KKKLDEESITFGSEFQNY 295
           +   +M +KG+ P  VT+  L  GL +   +   R L     +K L   S+T+ +    Y
Sbjct: 673 ELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGY 732



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 136/283 (48%), Gaps = 12/283 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+ K + I  A +   EM  R ++ N  TY  L++G+C+   L           
Sbjct: 340 YTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDL----------E 389

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE +F EM + GI+PD+ +++ ++  Y +    + + + L  +K++ +        ++V
Sbjct: 390 KAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIV 449

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC CG +  A EL  EM+  G+ P+   Y    K          A+K+   MK+ GL 
Sbjct: 450 NGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLS 509

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YN +I  F    +M+  +    ++   GL P++ +Y   IHG C   + + A +
Sbjct: 510 -PDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAER 568

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ-SDMLRTWRRLKKKLDE 283
            F+EM++ G+ P  V    L  G  +  +  + + + +  LD+
Sbjct: 569 SFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQ 611



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 146/307 (47%), Gaps = 30/307 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFE--- 57
           YTSLI   CK   +  A     +M ++G+ PN+VTYN L+NG+C+   +  + E F+   
Sbjct: 655 YTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIP 714

Query: 58  ---------------------KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  +  A ++F  M++ G+ PD   +  ++    +A   +
Sbjct: 715 EKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTE 774

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L     M E+GI  T A +++++      G++ +A +L+ +MV N + P+  TY    
Sbjct: 775 KALSLFLGMVEEGIASTPA-FNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILI 833

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           + +    +   A +L+ +M++  + +PN+ +Y  L+  +  + R   +  +++++   G+
Sbjct: 834 EYHCTVGNIKEAEQLFMEMQKRNV-MPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGI 892

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD  ++++++    ++  W +A +   +M+ +G+   K  +  L   L + + L     
Sbjct: 893 KPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNL---SE 949

Query: 277 LKKKLDE 283
           + K LDE
Sbjct: 950 VLKVLDE 956



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 120/298 (40%), Gaps = 45/298 (15%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           SL     K NR+++  +    M+   + P+V TY  L+N  CR             +   
Sbjct: 203 SLSKDLLKGNRVELFWKVYKGML-GAIVPDVYTYTNLINAYCRVGK----------VEEG 251

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
           + V  +M  +G  P++ ++S+V+    RA     +L+    M  KG+ P    Y++++  
Sbjct: 252 KHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDG 311

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE------ 177
            C   R  + + +L EM   G+ P    Y      +  + D  GA ++  +M        
Sbjct: 312 FCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLN 371

Query: 178 --------DGLC--------------------VPNMHSYNILIGMFMALNRMDMVREIWN 209
                    GLC                     P++ +YN LI  +  +  M+   E+  
Sbjct: 372 TFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLI 431

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           ++K   L  +      +++GLC       A + F EMI  GL P  V + T+ +GL++
Sbjct: 432 EIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVK 489



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 103/223 (46%), Gaps = 2/223 (0%)

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           KV+  M +  I PDV +++ +++ Y R  + +     L  M+EKG  P + TYS V+  L
Sbjct: 219 KVYKGM-LGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGL 277

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G +++A EL   M   G+ P    Y      +  +K +     +  +M   GL  P+
Sbjct: 278 CRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGL-KPD 336

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
             +Y  LI  F+  + +    ++  ++    +  +  +Y  LIHGLC+    ++A   F 
Sbjct: 337 HVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFS 396

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           EM   G+ P   T+  L  G  +   +     L  ++ +E++T
Sbjct: 397 EMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLT 439



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 84/178 (47%), Gaps = 10/178 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G+ K+ ++  A + + +M++  + PN VTY +L+   C   +          I+
Sbjct: 794 FNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGN----------IK 843

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE++F EM+ R + P+V +++ +LH Y+R  +        + M  +GI P    +S +V
Sbjct: 844 EAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMV 903

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
                 G    A +L+ +M+  GV      Y           + +  +K+  ++++ G
Sbjct: 904 DAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQG 961



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 114/281 (40%), Gaps = 12/281 (4%)

Query: 1    MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
            +Y +LI G CK    + A      M+E G+  +   +N L++G  +   L          
Sbjct: 759  VYCALIDGCCKAGNTEKALSLFLGMVEEGI-ASTPAFNALIDGFFKLGKL---------- 807

Query: 61   RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              A ++ ++M    I P+  +++I++  +      + +      M+++ + P V TY+S+
Sbjct: 808  IEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSL 867

Query: 121  VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
            +      GR  +   L  EMV  G+ P    ++     +    +   A+KL   M  +G+
Sbjct: 868  LHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGV 927

Query: 181  CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             V   + Y ILI      N +  V ++ ++V+  G    L +   L+       +  EA 
Sbjct: 928  NVCK-NLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEAL 986

Query: 241  QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            +    M+   L   + +     RG    +ML      +K L
Sbjct: 987  RVLESMVRSFLNLLEFSVRNGNRGKSNGEMLSIILEGRKSL 1027


>gi|255661028|gb|ACU25683.1| pentatricopeptide repeat-containing protein [Citharexylum
           montevidense]
          Length = 376

 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 123/256 (48%), Gaps = 11/256 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I G CK+ ++D A   L  MIE G +PN   YN L+NG      L  + +FE  IR
Sbjct: 132 YSAMISGLCKMGKLDKAVSVLNGMIESGCKPNTQVYNALING------LLGASKFEDAIR 185

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               VF E+  R   P + +++ +++   +  +   + D +  M EKG  P+V TYS ++
Sbjct: 186 ----VFKELGTRHCSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGWNPSVITYSLLI 241

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC   ++E A +L  +++  G  P  + +N              A +LY  M     C
Sbjct: 242 KGLCQDHKVEMALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTEHASELYFDMNHWN-C 300

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN L+  F           IW  +  +GL PD+ SY + + GLC   +   A  
Sbjct: 301 APNLVTYNTLMEGFYKGGDTRNALVIWARILRNGLLPDIISYNITLKGLCACNRISVAIL 360

Query: 242 YFVEMIEKGLLPQKVT 257
           +  + + K ++P  +T
Sbjct: 361 FLNDAVTKNIVPTVIT 376



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 138/330 (41%), Gaps = 62/330 (18%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR---------------RASLHPSE 54
           C+   I+ AER   EM E  + P+ V YN +LNG  +               R       
Sbjct: 1   CESGAINAAERVYKEMAESKISPDAVVYNAMLNGFFKAGRIKNCFDLWELMGREGSRNVA 60

Query: 55  RFEKTIR----NAE-----KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFM 105
            F   +R    N E      +++ M+  G   D T++ I++H + +      SL  L   
Sbjct: 61  SFNTMMRGLFNNGEVDEVFSIWELMKESGFVEDSTTYGILVHGFCKNGYNNKSLHVLEIA 120

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
           K++G       YS+++  LC  G+++ A  +L  M+ +G  P+ + YN       G    
Sbjct: 121 KQEGGALDAFAYSAMISGLCKMGKLDKAVSVLNGMIESGCKPNTQVYNALINGLLGASKF 180

Query: 166 NGAMKLYRQMKE--------------DGLCV--------------------PNMHSYNIL 191
             A+++++++                +GLC                     P++ +Y++L
Sbjct: 181 EDAIRVFKELGTRHCSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGWNPSVITYSLL 240

Query: 192 IGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 251
           I      ++++M  ++WN V   G  PD+  + +LIHGLC   K + A + + +M     
Sbjct: 241 IKGLCQDHKVEMALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTEHASELYFDMNHWNC 300

Query: 252 LPQKVTFETL----YRGLIQSDMLRTWRRL 277
            P  VT+ TL    Y+G    + L  W R+
Sbjct: 301 APNLVTYNTLMEGFYKGGDTRNALVIWARI 330



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 11/220 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G    ++ + A R   E+  R   P +VTYN L+NG+C+       ERF +  
Sbjct: 166 VYNALINGLLGASKFEDAIRVFKELGTRHCSPTIVTYNTLINGLCK------GERFAE-- 217

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +  EM  +G  P V ++S+++    + H+ +++L   N +  KG  P V  ++ +
Sbjct: 218 --AYDLVKEMLEKGWNPSVITYSLLIKGLCQDHKVEMALQLWNQVISKGFKPDVQMHNIL 275

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LCS G+ E A EL  +M      P+  TYN   + +    D   A+ ++ ++  +GL
Sbjct: 276 IHGLCSVGKTEHASELYFDMNHWNCAPNLVTYNTLMEGFYKGGDTRNALVIWARILRNGL 335

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
            +P++ SYNI +    A NR+ +     ND     + P +
Sbjct: 336 -LPDIISYNITLKGLCACNRISVAILFLNDAVTKNIVPTV 374



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 106/227 (46%), Gaps = 2/227 (0%)

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            I  AE+V+ EM    I PD   ++ +L+ + +A + +   D    M  +G    VA+++
Sbjct: 5   AINAAERVYKEMAESKISPDAVVYNAMLNGFFKAGRIKNCFDLWELMGREG-SRNVASFN 63

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           ++++ L + G +++   +   M  +G    + TY      +      N ++ +    K++
Sbjct: 64  TMMRGLFNNGEVDEVFSIWELMKESGFVEDSTTYGILVHGFCKNGYNNKSLHVLEIAKQE 123

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G  + +  +Y+ +I     + ++D    + N +  SG  P+   Y  LI+GL    K+++
Sbjct: 124 GGAL-DAFAYSAMISGLCKMGKLDKAVSVLNGMIESGCKPNTQVYNALINGLLGASKFED 182

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           A + F E+  +   P  VT+ TL  GL + +       L K++ E+ 
Sbjct: 183 AIRVFKELGTRHCSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKG 229


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 136/281 (48%), Gaps = 13/281 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +++ G C   R    +  + EM+  G  PN+VT++ L+  +CR         FE+   
Sbjct: 220 YNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNG------LFERV-- 271

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +V  +M   G  PDV  ++ ++    +  + +++   LN M   G+ P V  Y++++
Sbjct: 272 --HEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLL 329

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAE-TYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           K LCS  R E+AE LL EM     CP  + T+N            +  +++  QM E G 
Sbjct: 330 KGLCSADRWEEAEGLLAEMFDKD-CPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHG- 387

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C+P++ +Y  +I  F     +D    +   +   G  P+  SYT+++ GLC  ++W +A 
Sbjct: 388 CMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAE 447

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +   +MI++G  P  VTF TL   L +  ++     L K++
Sbjct: 448 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM 488



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 126/265 (47%), Gaps = 11/265 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY ++I G CK  R+++A   L  M   G+ PNVV YN LL G+C       ++R+E+  
Sbjct: 289 MYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCS------ADRWEE-- 340

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             AE +  EM  +    D  +F+I++    +       ++ L  M E G  P V TY++V
Sbjct: 341 --AEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTV 398

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G I++A  LL  M   G  P+  +Y    K     +    A +L  QM + G 
Sbjct: 399 INGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQG- 457

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN  ++N LI        ++   E+   +  +G  PDL SY+ +I GL +     EA 
Sbjct: 458 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEAL 517

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
           +    M++KG+ P  + + ++   L
Sbjct: 518 ELLNVMVKKGMSPNTIIYSSIASAL 542



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 131/280 (46%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+   C+   +D     L +M+E G  P+V+TY  ++NG C+          E  I 
Sbjct: 360 FNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCK----------EGLID 409

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M   G  P+  S++IVL     A +   + + ++ M ++G  P   T+++++
Sbjct: 410 EAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLI 469

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +E A ELL +M+ NG  P   +Y+          + + A++L   M + G+ 
Sbjct: 470 NFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGM- 528

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN   Y+ +        R++ V +++ +++ + +  D   Y  +I  LC++ +   A +
Sbjct: 529 SPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIE 588

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +   M+  G +P + T+  L RGL     ++  + +  +L
Sbjct: 589 FLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTEL 628



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 119/251 (47%), Gaps = 11/251 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G+CK   ID A   L  M   G  PN V+Y ++L G+C       +ER+     
Sbjct: 395 YTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCS------AERWV---- 444

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE++  +M  +G  P+  +F+ +++   +    + +++ L  M   G  P + +YS+V+
Sbjct: 445 DAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 504

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G  ++A ELL  MV+ G+ P+   Y+       G    N  ++++  + +D   
Sbjct: 505 DGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENI-QDTTV 563

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +   YN +I         D   E    +  SG  P+  +YT+LI GL  +   KEA +
Sbjct: 564 RSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQE 623

Query: 242 YFVEMIEKGLL 252
              E+  KG L
Sbjct: 624 ILTELCSKGAL 634



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 122/283 (43%), Gaps = 13/283 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+   C   RI  A   L +M  RG  P    Y+V L   CR +            R
Sbjct: 114 YFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGF----------R 163

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKL-NFMKEKGICPTVATYSSV 120
            A  V  ++  RG   DV + ++VL           ++  L + +   G  P V +Y++V
Sbjct: 164 GAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAV 223

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++ LC   R    ++L+ EMV  G  P+  T++                +++ QM E G 
Sbjct: 224 LRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHG- 282

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P++  Y  +I       R+++ R I N +   GL P++  Y  L+ GLC   +W+EA 
Sbjct: 283 CAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAE 342

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKKKLD 282
               EM +K      VTF  L   L Q+ ++ R    L++ L+
Sbjct: 343 GLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLE 385



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 2/175 (1%)

Query: 110 ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAM 169
           + P   TY  +V+ LC+ GRI DA  +L +M R G  P+   Y+   +         GA+
Sbjct: 107 VAPNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAV 166

Query: 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS-GLGPDLDSYTMLIH 228
            + R +   G C  ++ + N+++        +D    +  D+  S G  PD+ SY  ++ 
Sbjct: 167 GVLRDLHGRG-CALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLR 225

Query: 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           GLC  ++W        EM+  G  P  VTF TL   L ++ +      +  ++ E
Sbjct: 226 GLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAE 280



 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 10/74 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I   CK    D A  FL  M+  G  PN  TY +L+ G+        SE F   +
Sbjct: 569 LYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLA-------SEGF---V 618

Query: 61  RNAEKVFDEMRVRG 74
           + A+++  E+  +G
Sbjct: 619 KEAQEILTELCSKG 632


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 142/291 (48%), Gaps = 46/291 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI   CK   +  A + + E+++ G++ NVVTY  LL+G+C           E  ++
Sbjct: 199 YTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCE----------EGRMK 248

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE+VF  M   G+ P+  +++ ++H + +A + + + D L  MKEK I P +  Y +++
Sbjct: 249 EAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTIL 308

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE--DG 179
             LC+  R+E+A+ L+GE+  +G+  +A  Y      Y     A  A+ L  +M +  DG
Sbjct: 309 WGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDG 368

Query: 180 LC--------------------VPNMHSYNILIGMFM-------ALNRMDMVREIWNDVK 212
           LC                    +P+  +Y  LI   M       ALN  D + EI     
Sbjct: 369 LCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEI----- 423

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
             G+  DL +YT LI GL    + ++A     EMI KG+LP +V +  L +
Sbjct: 424 --GMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIK 472



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 139/283 (49%), Gaps = 11/283 (3%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +L++   K+ R D++ +F  +M   G++ +V TYN++++ +C+   L            A
Sbjct: 26  ALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEM----------A 75

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             +F +M+  G  PD+ +++ ++  + +       +     MK+    P V TY++++ C
Sbjct: 76  RSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINC 135

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C   R+  A E L EM  NG+ P+  TY+ F   +        A+K +  M+   L  P
Sbjct: 136 FCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVAL-TP 194

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N  +Y  LI        +    ++  ++  +G+  ++ +YT L+ GLCE+ + KEA + F
Sbjct: 195 NEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVF 254

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             M+  G+ P + T+  L  G I++  +   + + K++ E+ I
Sbjct: 255 RAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCI 297



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 147/306 (48%), Gaps = 36/306 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI  +CK  R+  A  FL EM   G++PNVVTY+  ++  C+   L  + +F     
Sbjct: 129 YNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKF----- 183

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                F +MR   + P+  +++ ++    +A     +L  +  + + GI   V TY++++
Sbjct: 184 -----FVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALL 238

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+++AEE+   M+  GV P+ ETY      +   K+   A  + ++MKE   C
Sbjct: 239 DGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEK--C 296

Query: 182 V-PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM--------------- 225
           + P++  Y  ++      +R++  + +  ++K SG+  +   YT                
Sbjct: 297 IKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEAL 356

Query: 226 --------LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
                   L+ GLC+   ++ A + F EM++KG++P K+ +  L  G ++   L+    L
Sbjct: 357 TLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNL 416

Query: 278 KKKLDE 283
           + ++ E
Sbjct: 417 RDRMIE 422



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 135/285 (47%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I   CK   ++MA     +M E G  P++VTYN L++G  +   L           
Sbjct: 59  YNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLD---------- 108

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F++M+    +PDV +++ +++ + +  +   + + L+ MK  G+ P V TYS+ +
Sbjct: 109 ECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFI 168

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +++A +   +M R  + P+  TY           +   A+KL  ++ + G+ 
Sbjct: 169 DAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIK 228

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N+ +Y  L+       RM    E++  +  +G+ P+ ++YT L+HG  + ++ + A  
Sbjct: 229 L-NVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKD 287

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM EK + P  + + T+  GL     L   + L  ++ E  I
Sbjct: 288 ILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGI 332



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 1/202 (0%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +  A + F +MR   + P   S + +LH  S+  +  LS      M   GI  +V TY+ 
Sbjct: 2   LEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNI 61

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC  G +E A  L  +M   G  P   TYN     +      +  + ++ QMK D 
Sbjct: 62  MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMK-DA 120

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C P++ +YN LI  F    RM    E  +++K +GL P++ +Y+  I   C++   +EA
Sbjct: 121 DCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEA 180

Query: 240 CQYFVEMIEKGLLPQKVTFETL 261
            ++FV+M    L P + T+ +L
Sbjct: 181 IKFFVDMRRVALTPNEFTYTSL 202



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 95/193 (49%), Gaps = 13/193 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++++G C  +R++ A+  +GE+ E G+  N V Y  L++   +      +    + +
Sbjct: 303 LYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEM 362

Query: 61  RN-------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE 107
            +             A+K+FDEM  +G+ PD  +++ ++    +    Q +L+  + M E
Sbjct: 363 LDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIE 422

Query: 108 KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG 167
            G+   +  Y++++  L   G+++ A  LL EM+  GV P    Y C  K+Y      + 
Sbjct: 423 IGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDE 482

Query: 168 AMKLYRQMKEDGL 180
           A++L  +M + G+
Sbjct: 483 ALELQNEMAKRGM 495



 Score = 43.5 bits (101), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%)

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P   S N L+     + R D+ R+ + D+  +G+   + +Y ++I  LC++   + A   
Sbjct: 19  PKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSL 78

Query: 243 FVEMIEKGLLPQKVTFETLYRG 264
           F +M E G  P  VT+ +L  G
Sbjct: 79  FTQMKEAGFTPDIVTYNSLIDG 100


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 136/285 (47%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ L++G CK+ R   A R L EM E+G  PN+VTY+ LL+  CR               
Sbjct: 351 YSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWD---------- 400

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  + D+M  +G   +   ++ +++   +  +   +   +  MK +G  P + TY++++
Sbjct: 401 DARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMI 460

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+   +E+AE +   ++  GV  +  TYN               ++L  +M   G C
Sbjct: 461 YHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHG-C 519

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++ SYN LI        +D    +  ++   G+ P+  SY MLI+ LC+  K ++A +
Sbjct: 520 QLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALE 579

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM+ +GL P  VT+ TL  GL +         L +KL  E++
Sbjct: 580 LSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENV 624



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 144/318 (45%), Gaps = 26/318 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           +  L+ G C + R+  A R +  M+ +G  P+VVTY  LL G+CR      +        
Sbjct: 250 FNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLP 309

Query: 57  ----------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLD 100
                           E  +  A ++++ M  +G  PDV ++SI++H   +  +   ++ 
Sbjct: 310 EVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVR 369

Query: 101 KLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160
            L+ M+EKG  P + TYS+++   C  G  +DA  +L +M+  G   +++ YN       
Sbjct: 370 MLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALC 429

Query: 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
                + A +L ++MK  G C P++ +YN +I      + M+    I+ ++   G+  + 
Sbjct: 430 KDGKLDQATRLVQEMKSQG-CKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANG 488

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK 280
            +Y  LIH L    +W+E  +   EM+  G     +++  L + L +   +         
Sbjct: 489 ITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDR----SMA 544

Query: 281 LDEESITFGSEFQNYHFK 298
           L EE +T G +  N+ + 
Sbjct: 545 LLEEMVTKGIKPNNFSYN 562



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 122/266 (45%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +IY  CK  ++D A R + EM  +G +P++ TYN ++  +C              + 
Sbjct: 421 YNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCN----------NDLME 470

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE +F  +   G+  +  +++ ++H   R  + Q  L   + M   G    V +Y+ ++
Sbjct: 471 EAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLI 530

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC  G ++ +  LL EMV  G+ P+  +YN    E         A++L ++M   GL 
Sbjct: 531 KALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGL- 589

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN LI     +        +   +    + PD+ +Y +LI   C+ +   +A  
Sbjct: 590 TPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAM 649

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
              + I  G++P + T+  + +  ++
Sbjct: 650 LLDKAISGGIVPNERTWGMMVQNFVR 675



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 128/312 (41%), Gaps = 42/312 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I+       +  A   L EM+  G   +V T+N L+ G+C              +
Sbjct: 214 LYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGR----------V 263

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ-----------PQLSLDKLN------ 103
           R A ++ D M  +G  P V ++  +L    R  Q           P++++  LN      
Sbjct: 264 REAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVIRGC 323

Query: 104 --------------FMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
                          M  KG  P V TYS ++  LC  GR   A  +L EM   G  P+ 
Sbjct: 324 LTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNI 383

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
            TY+     +      + A  +  QM   G  + N   YN +I       ++D    +  
Sbjct: 384 VTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSM-NSQGYNGIIYALCKDGKLDQATRLVQ 442

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           ++K  G  PD+ +Y  +I+ LC     +EA   F  +IE+G++   +T+ TL   L+++ 
Sbjct: 443 EMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNG 502

Query: 270 MLRTWRRLKKKL 281
             +   RL  ++
Sbjct: 503 RWQEGLRLASEM 514



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 25/275 (9%)

Query: 25  MIERGVEPNVVTYNVLLNGVCR--RASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSF 82
           M+   V P   T+ V    +CR  RA             +A  +   M   G  PD   +
Sbjct: 168 MLRDRVPPTTFTFGVAARALCRLGRAG------------DALALLRGMARHGCVPDAVLY 215

Query: 83  SIVLHVY---SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
             V+H         +  + LD++  M   G    V T++ +V  LC  GR+ +A  L+  
Sbjct: 216 QTVIHALVAQGGVAEAAMLLDEMLLM---GCAADVNTFNDLVLGLCGLGRVREAARLVDR 272

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
           M+  G  PS  TY    +     + A+ A  +  ++ E      N+   N +I   +   
Sbjct: 273 MMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPE-----VNVVMLNTVIRGCLTEG 327

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           ++    E++  +   G  PD+ +Y++L+HGLC+  ++  A +   EM EKG  P  VT+ 
Sbjct: 328 KLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYS 387

Query: 260 TLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           TL     ++ M    R +  ++  +  +  S+  N
Sbjct: 388 TLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYN 422



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 37/207 (17%)

Query: 63  AEKVFDEMRVR-GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           A  + D+M  R  + P   S+++VL   +RA     +L     M    + PT  T+    
Sbjct: 125 ALHLLDQMPRRFAVSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAA 184

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  GR  DA  LL  M R+G                                    C
Sbjct: 185 RALCRLGRAGDALALLRGMARHG------------------------------------C 208

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+   Y  +I   +A   +     + +++   G   D++++  L+ GLC   + +EA +
Sbjct: 209 VPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAAR 268

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
               M+ +G +P  VT+  L +GL ++
Sbjct: 269 LVDRMMTQGCMPSVVTYGFLLQGLCRT 295


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 134/263 (50%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI+G C+  R++ A +   EM+E+G +P+  TY VL+   C                
Sbjct: 245 YSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIG----------MTD 294

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ DEM  +   P+V +++I++    R  + + +      M + G+CP + T+++++
Sbjct: 295 KAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALI 354

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +  A +LL  M +    P+  TYN   +       +  A  L R++ ++GL 
Sbjct: 355 NGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGL- 413

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+  +YNIL+  F    +++M   I+N +  +GL PD  ++T LI GLC+  + ++A  
Sbjct: 414 LPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANG 473

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
               M++KG+   +VTF  L  G
Sbjct: 474 ILGSMVKKGISLDEVTFTALIDG 496



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 139/317 (43%), Gaps = 64/317 (20%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHP-SERFEKTI 60
           +T+LI G CK+ R++ A   LG M+++G+  + VT+  L++G C+          FE  +
Sbjct: 455 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMV 514

Query: 61  RN------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            N                        A  +  +M   G+ P V + +I++  + RA +  
Sbjct: 515 ENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETA 574

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           LSL  L  MK+ G  P V TY+ ++  LC+ GR+E+AE +L  M   GV P+  TY    
Sbjct: 575 LSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLV 634

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR---------------- 200
           K +      + A ++   M ++G C PN H Y+ L+  F+  N                 
Sbjct: 635 KAHVKAGRLDRAFQIVSTMVKNG-CQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDAR 693

Query: 201 ---------------------MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
                                +D   +I +++K  G+ P  D Y  L+ GLC++ +  EA
Sbjct: 694 SLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGV-PTEDLYNFLVVGLCKEGRIIEA 752

Query: 240 CQYFVEMIEKGLLPQKV 256
            Q   +M++ GL P K 
Sbjct: 753 DQLTQDMVKHGLFPDKA 769



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 141/326 (43%), Gaps = 48/326 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+ G C++++   A   L  +++ G+ P+ VTYN+L++G C+   L+          
Sbjct: 385 YNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNM--------- 435

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F+ M   G+EPD  +F+ ++    +  + + +   L  M +KGI     T+++++
Sbjct: 436 -AFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALI 494

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF----KEYRGRKDANG---------- 167
              C  G+ +D   L   MV N    +A T+NCF     K+Y+   +AN           
Sbjct: 495 DGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYK-LNEANAMLGKMMKYGL 553

Query: 168 ----------------------AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
                                 ++K+  +MK+ G C PN+++Y I+I       R++   
Sbjct: 554 VPSVVTHTILIEGHCRAGETALSLKMLERMKQAG-CSPNVYTYTIIINGLCNNGRVEEAE 612

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            I   +   G+ P+  +Y +L+    +  +   A Q    M++ G  P    +  L  G 
Sbjct: 613 TILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGF 672

Query: 266 IQSDMLRTWRRLKKKLDEESITFGSE 291
           + S+     R L    D ++ +  SE
Sbjct: 673 VLSNTAIGARALSSTGDLDARSLSSE 698



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 136/305 (44%), Gaps = 46/305 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G+CK   +  A + L  M +   +PN+ TYN L+ G+CR +  +      K   
Sbjct: 350 FNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSY------KAFL 403

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +V D     G+ PD  +++I++  + +  Q  ++ +  N M   G+ P   T+++++
Sbjct: 404 LLRRVVD----NGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 459

Query: 122 KCLCSCGRIEDAEELLGEMVRNG-----------------------VC------------ 146
             LC  GR+E A  +LG MV+ G                       VC            
Sbjct: 460 DGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 519

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
            +A T+NCF          N A  +  +M + GL VP++ ++ ILI          +  +
Sbjct: 520 TTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGL-VPSVVTHTILIEGHCRAGETALSLK 578

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +   +K +G  P++ +YT++I+GLC   + +EA      M   G+ P   T+  L +  +
Sbjct: 579 MLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHV 638

Query: 267 QSDML 271
           ++  L
Sbjct: 639 KAGRL 643



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 16/273 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG--VEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           Y +++   CK   +  AE F  +++  G  ++ +V T  VL N  CRR  L   E F   
Sbjct: 174 YRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLAN--CRRDDL--GEAF--- 226

Query: 60  IRNAEKVFDEM-RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
                +VF++M +     P+  ++SI++H    A + + +      M EKG  P+  TY+
Sbjct: 227 -----RVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYT 281

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++K  C  G  + A ++L EM      P+  TY               A  ++R+M + 
Sbjct: 282 VLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKH 341

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           GLC P + ++N LI  +     +    ++ + ++     P++ +Y  L+ GLC   K  +
Sbjct: 342 GLC-PGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYK 400

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           A      +++ GLLP +VT+  L  G  +   L
Sbjct: 401 AFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQL 433



 Score = 43.9 bits (102), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 12/129 (9%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           +D A +   E+ + GV P    YN L+ G+C+          E  I  A+++  +M   G
Sbjct: 715 VDHALKIRDEIKKCGV-PTEDLYNFLVVGLCK----------EGRIIEADQLTQDMVKHG 763

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           + PD    SI+ H Y +  +    L+ +  + +    P+ A+Y  V+  L + GR+++A+
Sbjct: 764 LFPDKAISSIIEH-YCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQ 822

Query: 135 ELLGEMVRN 143
           +L+ ++VR+
Sbjct: 823 KLVSDLVRH 831


>gi|297849786|ref|XP_002892774.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338616|gb|EFH69033.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 883

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 137/286 (47%), Gaps = 25/286 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY  LI  WC++N +  A +F   ++ + + P++ TY +++N  CR   L          
Sbjct: 602 MYGKLIGAWCRVNNVRKARQFFEILVTKEIIPDLFTYTIMINTYCRLNEL---------- 651

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  +F +M+ R ++PDV +++++L+       P+L + +   M+   + P V  Y+ +
Sbjct: 652 KQAYALFQDMKRRDVKPDVVTYTVLLN-----SNPELDVKRE--MEAFDVKPDVVLYTIM 704

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C    ++ A  L  +M R  + P   TY    K        N  + L R+MK   +
Sbjct: 705 INRYCQLNDVKKAYALFKDMKRREIVPDVVTYTVLLKN-------NPELDLTREMKAFDV 757

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++  Y +LI     +  +   + I++ +  SG+ PD   YT LI G C+    KEA 
Sbjct: 758 -KPDVFYYTVLIDWQCKIGDLKEAKGIFDQMIESGVDPDAAPYTALIAGCCKMGNLKEAK 816

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             F  MIE GL P  V++ TL  G  ++  +R    L K++ E+ I
Sbjct: 817 MIFDLMIESGLKPDFVSYTTLIAGFRRNGFVRKAFTLMKEMLEKGI 862



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 121/288 (42%), Gaps = 15/288 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNV----VTYNVLLNGVCRRASLHPSERFE 57
           Y + I G C      MA   L  + E  +  ++    + Y  ++ G+C           E
Sbjct: 255 YLNFIEGLCLNQMASMAYLLLQPLREVNILVDMSDLGIAYRRVVRGLCN----------E 304

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
             I +AEK F +M   GI+PDV  +S ++  + +      + D  N M EKG        
Sbjct: 305 MRIEDAEKAFLDMEEHGIDPDVYVYSAIIEGHRKTMNIPKAFDIFNKMVEKGKRINCVIG 364

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           SS+++C C  G    A +L  E     +      YN  F           A++L+R+M  
Sbjct: 365 SSILQCCCQMGNFSGAYDLFEEFRELNIPLDRVCYNVAFDALGKLGKVEEAIELFREMTG 424

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            G+  P++ +Y  LIG      +     ++  ++ GSG  PD+  Y +L  GL      +
Sbjct: 425 KGIA-PDVINYTTLIGGCCLQGKCSDAFDLMIEMDGSGKTPDIVIYNVLAGGLARNGLSQ 483

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           EA +    M ++G+ P  VT   +  GLI +  L       + L+ +S
Sbjct: 484 EALETLKLMEDRGVKPTYVTHNMVIEGLIVAGKLDKAEAFYESLEHKS 531



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 127/302 (42%), Gaps = 42/302 (13%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           K+ +++ A     EM  +G+ P+V+ Y  L+ G C +     S+ F+  I        EM
Sbjct: 408 KLGKVEEAIELFREMTGKGIAPDVINYTTLIGGCCLQGKC--SDAFDLMI--------EM 457

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
              G  PD+  ++++    +R    Q +L+ L  M+++G+ PT  T++ V++ L   G++
Sbjct: 458 DGSGKTPDIVIYNVLAGGLARNGLSQEALETLKLMEDRGVKPTYVTHNMVIEGLIVAGKL 517

Query: 131 EDAEELL-----------GEMVRNGVC-------------------PSAETYNCFFKEYR 160
           + AE                MV+ G C                   P +  +  F     
Sbjct: 518 DKAEAFYESLEHKSRENDASMVK-GYCEAGCLDQAFERFIRLEFPLPKSVYFTLFTSLCA 576

Query: 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
            +   + A  L  +M E G+  P    Y  LIG +  +N +   R+ +  +    + PDL
Sbjct: 577 EKNHISKAQDLLDRMWELGV-EPEKSMYGKLIGAWCRVNNVRKARQFFEILVTKEIIPDL 635

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK 280
            +YT++I+  C   + K+A   F +M  + + P  VT+  L     + D+ R       K
Sbjct: 636 FTYTIMINTYCRLNELKQAYALFQDMKRRDVKPDVVTYTVLLNSNPELDVKREMEAFDVK 695

Query: 281 LD 282
            D
Sbjct: 696 PD 697



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 128/302 (42%), Gaps = 29/302 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L  G  +      A   L  M +RGV+P  VT+N+++ G+     L  +E F +++
Sbjct: 468 IYNVLAGGLARNGLSQEALETLKLMEDRGVKPTYVTHNMVIEGLIVAGKLDKAEAFYESL 527

Query: 61  RNAEKVFDEMRVRG----------------IE---PDVTSFSIVLHVYSRAHQPQLSLDK 101
            +  +  D   V+G                +E   P    F++   + +  +    + D 
Sbjct: 528 EHKSRENDASMVKGYCEAGCLDQAFERFIRLEFPLPKSVYFTLFTSLCAEKNHISKAQDL 587

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
           L+ M E G+ P  + Y  ++   C    +  A +    +V   + P   TY      Y  
Sbjct: 588 LDRMWELGVEPEKSMYGKLIGAWCRVNNVRKARQFFEILVTKEIIPDLFTYTIMINTYCR 647

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN-DVKGSGLGPDL 220
             +   A  L++ MK   +  P++ +Y +L+    +   +D+ RE+   DVK     PD+
Sbjct: 648 LNELKQAYALFQDMKRRDV-KPDVVTYTVLLN---SNPELDVKREMEAFDVK-----PDV 698

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK 280
             YT++I+  C+    K+A   F +M  + ++P  VT+  L +   + D+ R  +    K
Sbjct: 699 VLYTIMINRYCQLNDVKKAYALFKDMKRREIVPDVVTYTVLLKNNPELDLTREMKAFDVK 758

Query: 281 LD 282
            D
Sbjct: 759 PD 760



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 121/296 (40%), Gaps = 50/296 (16%)

Query: 14  RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEK----VFDE 69
           R DM      E+   G++ +  TY +++  +CR       ++    + N+E     VF  
Sbjct: 197 RTDMVVGVFWEIERLGLDADAHTYVLVVQALCRNDDKEGVDKLLIRLLNSETRNPCVFYL 256

Query: 70  MRVRGI-EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128
             + G+    + S + +L       QP   ++ L  M + GI      Y  VV+ LC+  
Sbjct: 257 NFIEGLCLNQMASMAYLL------LQPLREVNILVDMSDLGI-----AYRRVVRGLCNEM 305

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG--------- 179
           RIEDAE+   +M  +G+ P    Y+   + +R   +   A  ++ +M E G         
Sbjct: 306 RIEDAEKAFLDMEEHGIDPDVYVYSAIIEGHRKTMNIPKAFDIFNKMVEKGKRINCVIGS 365

Query: 180 ------------------------LCVP-NMHSYNILIGMFMALNRMDMVREIWNDVKGS 214
                                   L +P +   YN+       L +++   E++ ++ G 
Sbjct: 366 SILQCCCQMGNFSGAYDLFEEFRELNIPLDRVCYNVAFDALGKLGKVEEAIELFREMTGK 425

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
           G+ PD+ +YT LI G C + K  +A    +EM   G  P  V +  L  GL ++ +
Sbjct: 426 GIAPDVINYTTLIGGCCLQGKCSDAFDLMIEMDGSGKTPDIVIYNVLAGGLARNGL 481



 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 90  SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG----- 144
           S    P L+L  L  ++     P+V  Y++V++ +C  G  +  +  L E+VR G     
Sbjct: 66  SMKDDPYLALSFLKRIEGNVALPSVQAYATVIRIVCGWGLDQKLDTFLVELVRKGDAGRG 125

Query: 145 ----------------VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
                           +           K Y   +    A+ ++ +        P++ + 
Sbjct: 126 FSVMELLKAIGEMEQSLVLLIRVSTALVKAYANLEMFEEAIDIFFRTYHSLGRAPDIKAL 185

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
           N L+   +A  R DMV  ++ +++  GL  D  +Y +++  LC
Sbjct: 186 NFLLNRMIASGRTDMVVGVFWEIERLGLDADAHTYVLVVQALC 228


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 131/264 (49%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++   CK  +  +A   L +M ER ++ + V Y+++++G+C+  SL           
Sbjct: 215 YGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLD---------- 264

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA  +F+EM ++G + D+  ++ ++  +  A +       L  M ++ I P V  +S+++
Sbjct: 265 NAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALI 324

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            C    G++ +AEEL  EM++ G+ P   TY      +      + A  +   M   G C
Sbjct: 325 DCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG-C 383

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ ++NILI  +   N +D   E++  +   G+  D  +Y  LI G CE  K + A +
Sbjct: 384 GPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKE 443

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F EM+ + + P  V+++ L  GL
Sbjct: 444 LFQEMVSRRVRPDIVSYKILLDGL 467



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 137/284 (48%), Gaps = 11/284 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+LI G+C   R D   + L +MI+R + P+VV ++ L++   +          E  +
Sbjct: 284 IYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVK----------EGKL 333

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R AE++  EM  RGI PD  +++ ++  + + +Q   +   L+ M  KG  P + T++ +
Sbjct: 334 REAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNIL 393

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C    I+D  EL  +M   GV     TYN   + +        A +L+++M    +
Sbjct: 394 INGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRV 453

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ SY IL+         +   EI+  ++ S +  D+  Y ++IHG+C   K  +A 
Sbjct: 454 -RPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAW 512

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
             F  +  KG+ P   T+  +  GL +   L     L +K++E+
Sbjct: 513 DLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEED 556



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 144/311 (46%), Gaps = 35/311 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+C++ ++++A+    EM+ R V P++V+Y +LL+G+C      P +  E    
Sbjct: 425 YNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNG--EPEKALE---- 478

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +F+++    +E D+  ++I++H    A +   + D    +  KG+ P V TY+ ++
Sbjct: 479 ----IFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMI 534

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G + +A+ L  +M  +G  P+  TYN   + + G  DA  + KL  ++K  G  
Sbjct: 535 GGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFS 594

Query: 182 V---------------------PNMHSYNILIGMFMALNRMDM--VREIWNDVKGSGLGP 218
           V                     P++ ++  L+  F       +     ++ ++K  G  P
Sbjct: 595 VDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKP 654

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
           ++ +Y  +I GL       +      +M E+G  P  VT  T   GL + D+  +   L 
Sbjct: 655 NVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLL 714

Query: 279 KKL--DEESIT 287
           +K+  D E +T
Sbjct: 715 RKMENDNEDVT 725



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 143/301 (47%), Gaps = 20/301 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++LI G C   R+  A   +  M+E G +P ++T N L+NG+C              + 
Sbjct: 145 FSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLC----------LNGKVS 194

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  + D M   G +P+  ++  VL V  ++ Q  L+++ L  M+E+ I      YS ++
Sbjct: 195 DAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIII 254

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE--YRGRKDANGAMKLYRQMKEDG 179
             LC  G +++A  L  EM   G       Y    +   Y GR D +GA KL R M +  
Sbjct: 255 DGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWD-DGA-KLLRDMIKRK 312

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  P++ +++ LI  F+   ++    E+  ++   G+ PD  +YT LI G C++ +  +A
Sbjct: 313 I-TPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKA 371

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD-----EESITFGSEFQN 294
                 M+ KG  P   TF  L  G  +++++     L +K+       +++T+ +  Q 
Sbjct: 372 NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQG 431

Query: 295 Y 295
           +
Sbjct: 432 F 432



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 129/286 (45%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ L     +  + D+      +M  +G+  N+ T ++++N  CR   L           
Sbjct: 75  FSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSL--------- 125

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A     ++   G EPD  +FS +++      +   +L+ ++ M E G  PT+ T +++V
Sbjct: 126 -AFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALV 184

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++ DA  L+  MV  G  P+  TY    K          AM+L R+M+E  + 
Sbjct: 185 NGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIK 244

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +  +  Y+I+I        +D    ++N+++  G   D+  YT LI G C   +W +  +
Sbjct: 245 LDAVK-YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAK 303

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              +MI++ + P  V F  L    ++   LR    L K++ +  I+
Sbjct: 304 LLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGIS 349



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 36/229 (15%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +F EM      P +  FS +  V +R  Q  L LD    M+ KGI   + T S ++
Sbjct: 55  DAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMI 114

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
            C C C ++  A   +G++++ G  P   T++                        +GLC
Sbjct: 115 NCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLI---------------------NGLC 153

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +    S         AL  +D + E+       G  P L +   L++GLC   K  +A  
Sbjct: 154 LEGRVSE--------ALELVDRMVEM-------GHKPTLITLNALVNGLCLNGKVSDAVL 198

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
               M+E G  P +VT+  + + + +S        L +K++E  I   +
Sbjct: 199 LIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDA 247


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 138/288 (47%), Gaps = 20/288 (6%)

Query: 2   YTSLIYGWCK------INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER 55
           Y SLI G+CK      +  +DM    L EM+E G+ P  VT+ VL+NG C+ ++   + R
Sbjct: 229 YNSLIDGYCKKGGAGNMYHVDM---LLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVR 285

Query: 56  FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA 115
                     VF+EM+ +GI   V +++ ++       + +  +  +  M++ G+ P   
Sbjct: 286 ----------VFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEI 335

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           T+  V+K  C  G + DA + +  M    V P    YN     YR       AM +   M
Sbjct: 336 TFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAM 395

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            + G+  PN+ +YN LI  F           + +++K  G+  D+ +Y +LI  LC K +
Sbjct: 396 AKKGIS-PNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGE 454

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            ++A +   EM E GL P  +T+ T+ +G      +++   ++ ++++
Sbjct: 455 VRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEK 502



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 135/282 (47%), Gaps = 8/282 (2%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + ++I G C+I ++  A     ++   G+ P+V TYN L++G C++            + 
Sbjct: 194 FNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGG-------AGNMY 246

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           + + +  EM   GI P   +F ++++ Y +      ++     MK++GI  +V TY+S++
Sbjct: 247 HVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLI 306

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LCS G++E+  +L+ EM   G+ P+  T+ C  K +  +     A      M E  + 
Sbjct: 307 SGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNV- 365

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YNILI ++  L +M+    +   +   G+ P++ +Y  LI G      W+ A  
Sbjct: 366 EPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASG 425

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
              EM EKG+    VT+  L   L     +R   +L  ++ E
Sbjct: 426 LLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSE 467



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 126/266 (47%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G C   +++   + + EM + G+ PN +T+  +L G C++  +           
Sbjct: 302 YNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMA---------- 351

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A    D M  R +EPDV  ++I++ VY R  + + ++     M +KGI P V TY+ ++
Sbjct: 352 DANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLI 411

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G    A  LL EM   G+     TYN        + +   A+KL  +M E GL 
Sbjct: 412 TGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGL- 470

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +YN +I  F     +    EI   ++      ++ +Y + I   C+  K  EA  
Sbjct: 471 EPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEAND 530

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
              EM++K L+P  +T+ET+  G+++
Sbjct: 531 LLNEMLDKCLVPNGITYETIKEGMME 556



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 123/234 (52%), Gaps = 15/234 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  ++ G+CK   +  A  ++  M ER VEP+VV YN+L++ V RR            + 
Sbjct: 337 FGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILID-VYRRLG---------KME 386

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  V + M  +GI P+VT+++ ++  +SR+   + +   L+ MKEKGI   V TY+ ++
Sbjct: 387 DAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLI 446

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +  A +LL EM   G+ P+  TYN   + +  + +   A ++  +M++   C
Sbjct: 447 GALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEK---C 503

Query: 182 --VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
               N+ +YN+ I  F  + +MD   ++ N++    L P+  +Y  +  G+ EK
Sbjct: 504 RKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEK 557



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 120/258 (46%), Gaps = 23/258 (8%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
           P+  + N LL G+             K +  AEK F     R + PD+ +F+ V+    R
Sbjct: 154 PSTSSVNALLAGLVG----------AKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCR 203

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC---SCGRIEDAEELLGEMVRNGVCPS 148
             Q + + D    +K  G+ P+VATY+S++   C     G +   + LL EMV  G+ P+
Sbjct: 204 IGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPT 263

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
           A T+      Y    +   A++++ +MK+ G+   ++ +YN LI    +  +++   ++ 
Sbjct: 264 AVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAA-SVVTYNSLISGLCSEGKVEEGVKLM 322

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            +++  GL P+  ++  ++ G C+K    +A  +   M E+ + P  V +  L       
Sbjct: 323 EEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNIL------- 375

Query: 269 DMLRTWRRLKKKLDEESI 286
             +  +RRL K  D  ++
Sbjct: 376 --IDVYRRLGKMEDAMAV 391



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 11/191 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI  + ++ +++ A      M ++G+ PNV TYN L+ G  R              
Sbjct: 371 IYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDW---------- 420

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R+A  + DEM+ +GIE DV ++++++       + + ++  L+ M E G+ P   TY+++
Sbjct: 421 RSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTI 480

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C  G I+ A E+   M +     +  TYN F K +      + A  L  +M +  L
Sbjct: 481 IQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCL 540

Query: 181 CVPNMHSYNIL 191
            VPN  +Y  +
Sbjct: 541 -VPNGITYETI 550


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 134/263 (50%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI+G C+  R++ A +   EM+E+G +P+  TY VL+   C                
Sbjct: 202 YSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIG----------MTD 251

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ DEM  +   P+V +++I++    R  + + +      M + G+CP + T+++++
Sbjct: 252 KAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALI 311

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +  A +LL  M +    P+  TYN   +       +  A  L R++ ++GL 
Sbjct: 312 NGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGL- 370

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+  +YNIL+  F    +++M   I+N +  +GL PD  ++T LI GLC+  + ++A  
Sbjct: 371 LPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANG 430

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
               M++KG+   +VTF  L  G
Sbjct: 431 ILGSMVKKGISLDEVTFTALIDG 453



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 139/317 (43%), Gaps = 64/317 (20%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHP-SERFEKTI 60
           +T+LI G CK+ R++ A   LG M+++G+  + VT+  L++G C+          FE  +
Sbjct: 412 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMV 471

Query: 61  RN------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            N                        A  +  +M   G+ P V + +I++  + RA +  
Sbjct: 472 ENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETA 531

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           LSL  L  MK+ G  P V TY+ ++  LC+ GR+E+AE +L  M   GV P+  TY    
Sbjct: 532 LSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLV 591

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR---------------- 200
           K +      + A ++   M ++G C PN H Y+ L+  F+  N                 
Sbjct: 592 KAHVKAGRLDRAFQIVSTMVKNG-CQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDAR 650

Query: 201 ---------------------MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
                                +D   +I +++K  G+ P  D Y  L+ GLC++ +  EA
Sbjct: 651 SLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGV-PTEDLYNFLVVGLCKEGRIIEA 709

Query: 240 CQYFVEMIEKGLLPQKV 256
            Q   +M++ GL P K 
Sbjct: 710 DQLTQDMVKHGLFPDKA 726



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 141/326 (43%), Gaps = 48/326 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+ G C++++   A   L  +++ G+ P+ VTYN+L++G C+   L+          
Sbjct: 342 YNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNM--------- 392

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F+ M   G+EPD  +F+ ++    +  + + +   L  M +KGI     T+++++
Sbjct: 393 -AFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALI 451

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF----KEYRGRKDANG---------- 167
              C  G+ +D   L   MV N    +A T+NCF     K+Y+   +AN           
Sbjct: 452 DGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYK-LNEANAMLGKMMKYGL 510

Query: 168 ----------------------AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
                                 ++K+  +MK+ G C PN+++Y I+I       R++   
Sbjct: 511 VPSVVTHTILIEGHCRAGETALSLKMLERMKQAG-CSPNVYTYTIIINGLCNNGRVEEAE 569

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            I   +   G+ P+  +Y +L+    +  +   A Q    M++ G  P    +  L  G 
Sbjct: 570 TILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGF 629

Query: 266 IQSDMLRTWRRLKKKLDEESITFGSE 291
           + S+     R L    D ++ +  SE
Sbjct: 630 VLSNTAIGARALSSTGDLDARSLSSE 655



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 136/305 (44%), Gaps = 46/305 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G+CK   +  A + L  M +   +PN+ TYN L+ G+CR +  +      K   
Sbjct: 307 FNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSY------KAFL 360

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +V D     G+ PD  +++I++  + +  Q  ++ +  N M   G+ P   T+++++
Sbjct: 361 LLRRVVD----NGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 416

Query: 122 KCLCSCGRIEDAEELLGEMVRNG-----------------------VC------------ 146
             LC  GR+E A  +LG MV+ G                       VC            
Sbjct: 417 DGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 476

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
            +A T+NCF          N A  +  +M + GL VP++ ++ ILI          +  +
Sbjct: 477 TTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGL-VPSVVTHTILIEGHCRAGETALSLK 535

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +   +K +G  P++ +YT++I+GLC   + +EA      M   G+ P   T+  L +  +
Sbjct: 536 MLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHV 595

Query: 267 QSDML 271
           ++  L
Sbjct: 596 KAGRL 600



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 124/273 (45%), Gaps = 16/273 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG--VEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           Y +++   CK   +  AE F  +++  G  ++ +V T  VL N  CRR  L  + R    
Sbjct: 131 YRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLAN--CRRDDLGEAFR---- 184

Query: 60  IRNAEKVFDEM-RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
                 VF++M +     P+  ++SI++H    A + + +      M EKG  P+  TY+
Sbjct: 185 ------VFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYT 238

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++K  C  G  + A ++L EM      P+  TY               A  ++R+M + 
Sbjct: 239 VLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKH 298

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           GLC P + ++N LI  +     +    ++ + ++     P++ +Y  L+ GLC   K  +
Sbjct: 299 GLC-PGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYK 357

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           A      +++ GLLP +VT+  L  G  +   L
Sbjct: 358 AFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQL 390



 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 12/129 (9%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           +D A +   E+ + GV P    YN L+ G+C+          E  I  A+++  +M   G
Sbjct: 672 VDHALKIRDEIKKCGV-PTEDLYNFLVVGLCK----------EGRIIEADQLTQDMVKHG 720

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           + PD    SI+ H Y +  +    L+ +  + +    P+ A+Y  V+  L + GR+++A+
Sbjct: 721 LFPDKAISSIIEH-YCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQ 779

Query: 135 ELLGEMVRN 143
           +L+ ++VR+
Sbjct: 780 KLVSDLVRH 788


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 138/288 (47%), Gaps = 20/288 (6%)

Query: 2   YTSLIYGWCK------INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER 55
           Y SLI G+CK      +  +DM    L EM+E G+ P  VT+ VL+NG C+ ++   + R
Sbjct: 229 YNSLIDGYCKKGGAGNMYHVDM---LLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVR 285

Query: 56  FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA 115
                     VF+EM+ +GI   V +++ ++       + +  +  +  M++ G+ P   
Sbjct: 286 ----------VFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEI 335

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           T+  V+K  C  G + DA + +  M    V P    YN     YR       AM +   M
Sbjct: 336 TFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAM 395

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            + G+  PN+ +YN LI  F           + +++K  G+  D+ +Y +LI  LC K +
Sbjct: 396 AKKGIS-PNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGE 454

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            ++A +   EM E GL P  +T+ T+ +G      +++   ++ ++++
Sbjct: 455 VRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEK 502



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 135/282 (47%), Gaps = 8/282 (2%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + ++I G C+I ++  A     ++   G+ P+V TYN L++G C++            + 
Sbjct: 194 FNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGG-------AGNMY 246

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           + + +  EM   GI P   +F ++++ Y +      ++     MK++GI  +V TY+S++
Sbjct: 247 HVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLI 306

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LCS G++E+  +L+ EM   G+ P+  T+ C  K +  +     A      M E  + 
Sbjct: 307 SGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNV- 365

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  YNILI ++  L +M+    +   +   G+ P++ +Y  LI G      W+ A  
Sbjct: 366 EPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASG 425

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
              EM EKG+    VT+  L   L     +R   +L  ++ E
Sbjct: 426 LLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSE 467



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 126/266 (47%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G C   +++   + + EM + G+ PN +T+  +L G C++  +           
Sbjct: 302 YNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMA---------- 351

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A    D M  R +EPDV  ++I++ VY R  + + ++     M +KGI P V TY+ ++
Sbjct: 352 DANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLI 411

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G    A  LL EM   G+     TYN        + +   A+KL  +M E GL 
Sbjct: 412 TGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGL- 470

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +YN +I  F     +    EI   ++      ++ +Y + I   C+  K  EA  
Sbjct: 471 EPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEAND 530

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
              EM++K L+P  +T+ET+  G+++
Sbjct: 531 LLNEMLDKCLVPNGITYETIKEGMME 556



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 123/234 (52%), Gaps = 15/234 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  ++ G+CK   +  A  ++  M ER VEP+VV YN+L++ V RR            + 
Sbjct: 337 FGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILID-VYRRLG---------KME 386

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  V + M  +GI P+VT+++ ++  +SR+   + +   L+ MKEKGI   V TY+ ++
Sbjct: 387 DAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLI 446

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G +  A +LL EM   G+ P+  TYN   + +  + +   A ++  +M++   C
Sbjct: 447 GALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEK---C 503

Query: 182 --VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
               N+ +YN+ I  F  + +MD   ++ N++    L P+  +Y  +  G+ EK
Sbjct: 504 RKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEK 557



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 120/258 (46%), Gaps = 23/258 (8%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
           P+  + N LL G+             K +  AEK F     R + PD+ +F+ V+    R
Sbjct: 154 PSTSSVNALLAGLVG----------AKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCR 203

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC---SCGRIEDAEELLGEMVRNGVCPS 148
             Q + + D    +K  G+ P+VATY+S++   C     G +   + LL EMV  G+ P+
Sbjct: 204 IGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPT 263

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
           A T+      Y    +   A++++ +MK+ G+   ++ +YN LI    +  +++   ++ 
Sbjct: 264 AVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAA-SVVTYNSLISGLCSEGKVEEGVKLM 322

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            +++  GL P+  ++  ++ G C+K    +A  +   M E+ + P  V +  L       
Sbjct: 323 EEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNIL------- 375

Query: 269 DMLRTWRRLKKKLDEESI 286
             +  +RRL K  D  ++
Sbjct: 376 --IDVYRRLGKMEDAMAV 391



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 11/191 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI  + ++ +++ A      M ++G+ PNV TYN L+ G  R              
Sbjct: 371 IYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDW---------- 420

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R+A  + DEM+ +GIE DV ++++++       + + ++  L+ M E G+ P   TY+++
Sbjct: 421 RSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTI 480

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C  G I+ A E+   M +     +  TYN F K +      + A  L  +M +  L
Sbjct: 481 IQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCL 540

Query: 181 CVPNMHSYNIL 191
            VPN  +Y  +
Sbjct: 541 -VPNGITYETI 550


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 132/260 (50%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I   CK   +D A   L  M++ GV P+ +TYN +++G C  +S  P E       
Sbjct: 119 YNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFC--SSGQPKE------- 169

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A     +MR  G+EPDV +++ ++    +  +   +    + M ++G+ P + TY +++
Sbjct: 170 -AIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLL 228

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +   + G + +   LL  MVRNG+ P+   ++     Y  ++    AM ++ +M++ GL 
Sbjct: 229 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLN 288

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +Y  +I +     R++     +  +   GL PD   Y  LIH LC   KW++A +
Sbjct: 289 -PNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEE 347

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F+EM+++G+    + F ++
Sbjct: 348 LFLEMLDRGICLSTIFFNSI 367



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 144/293 (49%), Gaps = 18/293 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I G+ K   +D       +M+++ + PNVVTYN ++  +C+           +T+ 
Sbjct: 91  YSTVINGFFKEGDLD-------KMLDQRISPNVVTYNSIIAALCK----------AQTVD 133

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V   M   G+ PD  +++ ++H +  + QP+ ++  L  M+  G+ P V TY+S++
Sbjct: 134 KAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLM 193

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A ++   M + G+ P   TY    + Y  +        L   M  +G+ 
Sbjct: 194 DYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 253

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN + ++IL+  +    +++    +++ ++  GL P+  +Y  +I  LC+  + ++A  
Sbjct: 254 -PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAML 312

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           YF +MI++GL P  + + +L   L   D       L  ++ +  I   + F N
Sbjct: 313 YFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFN 365



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 133/280 (47%), Gaps = 26/280 (9%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIE- 76
           A     E++ RG+ P+V +YN+LLNG+C           E   + A ++   M   G + 
Sbjct: 36  ARHVFDELLRRGI-PDVFSYNILLNGLCD----------ENRSQEALELLHIMADDGGDC 84

Query: 77  -PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
            PDV S+S V++ + +    +  LDK   M ++ I P V TY+S++  LC    ++ A E
Sbjct: 85  PPDVVSYSTVINGFFK----EGDLDK---MLDQRISPNVVTYNSIIAALCKAQTVDKAME 137

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           +L  MV++GV P   TYN     +        A+   ++M+ DG+  P++ +YN L+   
Sbjct: 138 VLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGV-EPDVVTYNSLMDYL 196

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
               R    R+I++ +   GL PD+ +Y  L+ G   K    E       M+  G+ P  
Sbjct: 197 CKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNH 256

Query: 256 VTFETLY-----RGLIQSDMLRTWRRLKKKLDEESITFGS 290
             F  L      +  ++  ML   +  ++ L+  ++T+G+
Sbjct: 257 YVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGT 296



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 151/371 (40%), Gaps = 83/371 (22%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+++G+C   +   A  FL +M   GVEP+VVTYN L++ +C+               
Sbjct: 154 YNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGR----------CT 203

Query: 62  NAEKVFDEMRVRGIEPDVTS-----------------------------------FSIVL 86
            A K+FD M  RG++PD+T+                                   FSI++
Sbjct: 204 EARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILV 263

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
             Y++  + + ++   + M+++G+ P   TY +V+  LC  GR+EDA     +M+  G+ 
Sbjct: 264 CAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLR 323

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNIL--------------- 191
           P +  YN              A +L+ +M + G+C+  +   +I+               
Sbjct: 324 PDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKL 383

Query: 192 ------IGM---FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
                 IG+    + L R D  ++++     +GL P+  +Y ++   +  +   +E  Q 
Sbjct: 384 FDLMVRIGVKPDIITLGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQL 443

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF-------------G 289
           F+ M + G          + R L+Q   +         +DE+  +              G
Sbjct: 444 FLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSG 503

Query: 290 SEFQNYH-FKP 299
            ++Q YH F P
Sbjct: 504 GKYQEYHIFLP 514



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 125/267 (46%), Gaps = 22/267 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +++ L+  + K  +++ A     +M ++G+ PN VTY  +++ +C+      S R E  +
Sbjct: 258 VFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCK------SGRVEDAM 311

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              E++ DE    G+ PD   ++ ++H      + + + +    M ++GIC +   ++S+
Sbjct: 312 LYFEQMIDE----GLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSI 367

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  GR+ ++ +L   MVR GV P   T         GR D   A  L+     +GL
Sbjct: 368 IDSHCKEGRVIESGKLFDLMVRIGVKPDIITL--------GRNDE--AKDLFVAFSSNGL 417

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VPN  +Y ++    +    ++ + +++  ++ +G   D      ++  L ++ +   A 
Sbjct: 418 -VPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAG 476

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            Y + MI++     + +  +L+  L+ 
Sbjct: 477 TY-LSMIDEKHFSLEASTASLFIDLLS 502



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 80/202 (39%), Gaps = 35/202 (17%)

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG----------- 179
           EDA  +  E++R G+ P   +YN           +  A++L   M +DG           
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 180 ------------------LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
                                PN+ +YN +I        +D   E+   +  SG+ PD  
Sbjct: 93  TVINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCM 152

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL---- 277
           +Y  ++HG C   + KEA  +  +M   G+ P  VT+ +L   L ++      R++    
Sbjct: 153 TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSM 212

Query: 278 -KKKLDEESITFGSEFQNYHFK 298
            K+ L  +  T+G+  Q Y  K
Sbjct: 213 TKRGLKPDITTYGTLLQGYATK 234


>gi|297844198|ref|XP_002889980.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335822|gb|EFH66239.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 517

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 140/300 (46%), Gaps = 13/300 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+CK  RI+ AE     M + G EP++VTYNVLLN                 +
Sbjct: 222 VYNALISGFCKAGRIEKAEALKSFMSKIGCEPDLVTYNVLLNYYYD----------NNML 271

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLD-KLNFMKEKGICPTVATYSS 119
           + AE V  EM   GI+ D  S++ +L  + R   P       L  M+ +G C  V +YS+
Sbjct: 272 KRAEGVMTEMVRSGIQLDAYSYNQLLKRHCRVSHPDRCYSFMLKEMEPRGFCDVV-SYST 330

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +++  C     + A +L  EM + G+  +  T+    K +    +++ A KL  QM E G
Sbjct: 331 LIETFCRASNTKKAYKLFEEMRQKGIVTNVVTFTSLIKAFLREGNSSVAKKLLDQMTELG 390

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           L  P+   Y  ++        +D    I+ND+    + PD  SY  LI GLC   +  EA
Sbjct: 391 LS-PDRIFYTTILDHLCKSGNVDKAYGIFNDMIEHEITPDAISYNSLISGLCRSGRVTEA 449

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
            + F +M  K   P ++TF+ +  GLI+   L    ++  ++ ++  T   +  +   K 
Sbjct: 450 IKLFEDMKGKECCPDELTFKFIIGGLIREKKLSAAYKVWDQMMDKGFTLDRDVSDTLIKA 509



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 143/324 (44%), Gaps = 51/324 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+  I G CK+ + ++ +  L +M   G  P++  +N+ L+ +CR          E  + 
Sbjct: 82  YSRFISGLCKVKKFELIDALLRDMETLGFIPDIWAFNIYLDLLCR----------ENKVG 131

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A + F  M  RG EPDV S++I+++   RA +   +++  N M   G+ P     +++V
Sbjct: 132 FAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALV 191

Query: 122 KCLCSCGRIEDAEELLGEMVRNG-VCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKED 178
             LC   +++ A E++ E +++  V  S   YN     +   GR +   A+K +  M + 
Sbjct: 192 VGLCHARKVDLAYEMVAEEIKSARVKLSIVVYNALISGFCKAGRIEKAEALKSF--MSKI 249

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD------------------- 219
           G C P++ +YN+L+  +   N +     +  ++  SG+  D                   
Sbjct: 250 G-CEPDLVTYNVLLNYYYDNNMLKRAEGVMTEMVRSGIQLDAYSYNQLLKRHCRVSHPDR 308

Query: 220 ----------------LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
                           + SY+ LI   C     K+A + F EM +KG++   VTF +L +
Sbjct: 309 CYSFMLKEMEPRGFCDVVSYSTLIETFCRASNTKKAYKLFEEMRQKGIVTNVVTFTSLIK 368

Query: 264 GLIQSDMLRTWRRLKKKLDEESIT 287
             ++       ++L  ++ E  ++
Sbjct: 369 AFLREGNSSVAKKLLDQMTELGLS 392



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 107/232 (46%), Gaps = 13/232 (5%)

Query: 2   YTSLIYGWCKINRIDMAERF-LGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y  L+   C+++  D    F L EM  RG   +VV+Y+ L+   CR ++           
Sbjct: 293 YNQLLKRHCRVSHPDRCYSFMLKEMEPRGF-CDVVSYSTLIETFCRASN----------T 341

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A K+F+EMR +GI  +V +F+ ++  + R     ++   L+ M E G+ P    Y+++
Sbjct: 342 KKAYKLFEEMRQKGIVTNVVTFTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTI 401

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G ++ A  +  +M+ + + P A +YN              A+KL+  MK    
Sbjct: 402 LDHLCKSGNVDKAYGIFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKE- 460

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
           C P+  ++  +IG  +   ++    ++W+ +   G   D D    LI   C 
Sbjct: 461 CCPDELTFKFIIGGLIREKKLSAAYKVWDQMMDKGFTLDRDVSDTLIKASCS 512



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           I NA +VFDEMR        + ++  + V  +  + +L+      M   G      TYS 
Sbjct: 25  IDNAVQVFDEMRHSSYRVFSSDYNRFIGVLVKESRFELAEAIYRDMMPMGFSLIPFTYSR 84

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
            +  LC   + E  + LL +M   G  P    +N +            A++ +  M + G
Sbjct: 85  FISGLCKVKKFELIDALLRDMETLGFIPDIWAFNIYLDLLCRENKVGFAVQTFFCMVQRG 144

Query: 180 LCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
              P++ SY ILI G+F A    D V EIWN +  SG+ PD  +   L+ GLC  +K   
Sbjct: 145 R-EPDVVSYTILINGLFRAGKVTDAV-EIWNAMIRSGVSPDNKACAALVVGLCHARKVDL 202

Query: 239 ACQYFVEMIEKGLLPQK-VTFETLYRGLIQSDMLRTWRRLK 278
           A +   E I+   +    V +  L  G  ++  +     LK
Sbjct: 203 AYEMVAEEIKSARVKLSIVVYNALISGFCKAGRIEKAEALK 243



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 7/167 (4%)

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
            Y S +  L   G I++A ++  EM  +     +  YN F            A  +YR M
Sbjct: 11  AYRSRIANLVKSGMIDNAVQVFDEMRHSSYRVFSSDYNRFIGVLVKESRFELAEAIYRDM 70

Query: 176 KEDGLC-VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
              G   +P   +Y+  I     + + +++  +  D++  G  PD+ ++ + +  LC + 
Sbjct: 71  MPMGFSLIP--FTYSRFISGLCKVKKFELIDALLRDMETLGFIPDIWAFNIYLDLLCREN 128

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRL 277
           K   A Q F  M+++G  P  V++  L  GL +    +D +  W  +
Sbjct: 129 KVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAM 175


>gi|115447913|ref|NP_001047736.1| Os02g0679200 [Oryza sativa Japonica Group]
 gi|50253128|dbj|BAD29374.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537267|dbj|BAF09650.1| Os02g0679200 [Oryza sativa Japonica Group]
          Length = 491

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 141/289 (48%), Gaps = 24/289 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L  GWC++     A   L  M+E G+ P   TYN++L G  R   L          R
Sbjct: 202 YNTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQL----------R 251

Query: 62  NAEKVFDEMRVRG-----IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           +A   F +M+ RG      +PDV S++ ++H    A Q + +    + M ++G  P+VAT
Sbjct: 252 HAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVAT 311

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+++++ +C  G +EDA  +   M   G  P+  TY    +        +  +KL  +MK
Sbjct: 312 YNALIQVICKKGNVEDAVTVFDGMRVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMK 371

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV-KGSGLGPDLDSYTMLIHGLCEKQK 235
             G C P + +YN+LI        M+   +++  + KG    P+ D+Y ++I  +  +++
Sbjct: 372 NGG-CEPIVQTYNVLIRYLFEEGEMEKGLDLFEKMSKGEECLPNQDTYNIIISAMFMRKR 430

Query: 236 WKE---ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            ++   A +   EM+++G LP++  F  +  GL    ML   + L +KL
Sbjct: 431 AEDMVLAARMVEEMVDRGYLPRRFMFNRVLNGL----MLTGNQELSRKL 475



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 102/237 (43%), Gaps = 21/237 (8%)

Query: 50  LHPSERFEKTIRNAEKVFDEMRVRGIEPDVT-SFSIVLHVYSRAHQ--PQLS--LDKLNF 104
           L P  R   T R    +F+ + V    PD+     + LH   R  Q  P  +  LD L+ 
Sbjct: 118 LFPRHRLAFTPRTFPILFERLAVSQRRPDLAVRLFLSLHRSHRVAQDLPLFNSLLDALSK 177

Query: 105 MKEKG------------ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152
            +  G              P V TY+++    C       A ++L  MV +G+ P+  TY
Sbjct: 178 SRHAGKAASLVRALEQRFTPDVVTYNTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTY 237

Query: 153 NCFFKEYRGRKDANGAMKLYRQMKEDGL----CVPNMHSYNILIGMFMALNRMDMVREIW 208
           N   K +        A   + QMK+ G     C P++ SY  ++       +++  R+++
Sbjct: 238 NIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVF 297

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +++   G  P + +Y  LI  +C+K   ++A   F  M  KG +P  VT+  L RGL
Sbjct: 298 DEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMRVKGYVPNVVTYTVLIRGL 354



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 115/275 (41%), Gaps = 58/275 (21%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ SL+    K      A   +   +E+   P+VVTYN L +G CR             +
Sbjct: 167 LFNSLLDALSKSRHAGKAASLV-RALEQRFTPDVVTYNTLADGWCR-------------V 212

Query: 61  RNAEKVFDEMRV---RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGI----C-P 112
           ++  +  D +R+    GI P  T+++I+L  + RA Q + + D    MK++G     C P
Sbjct: 213 KDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKP 272

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
            V +Y+++V  L   G++E A ++  EM + G                            
Sbjct: 273 DVVSYTTMVHGLGVAGQLEKARKVFDEMAKEG---------------------------- 304

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
                   C P++ +YN LI +      ++    +++ ++  G  P++ +YT+LI GLC 
Sbjct: 305 --------CAPSVATYNALIQVICKKGNVEDAVTVFDGMRVKGYVPNVVTYTVLIRGLCH 356

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
             K     +    M   G  P   T+  L R L +
Sbjct: 357 AGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFE 391


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 132/260 (50%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I   CK   +D A   L  M++ GV P+ +TYN +++G C  +S  P E       
Sbjct: 119 YNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFC--SSGQPKE------- 169

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A     +MR  G+EPDV +++ ++    +  +   +    + M ++G+ P + TY +++
Sbjct: 170 -AIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLL 228

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +   + G + +   LL  MVRNG+ P+   ++     Y  ++    AM ++ +M++ GL 
Sbjct: 229 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLN 288

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +Y  +I +     R++     +  +   GL PD   Y  LIH LC   KW++A +
Sbjct: 289 -PNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEE 347

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F+EM+++G+    + F ++
Sbjct: 348 LFLEMLDRGICLSTIFFNSI 367



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 144/293 (49%), Gaps = 18/293 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I G+ K       E  L +M+++ + PNVVTYN ++  +C+           +T+ 
Sbjct: 91  YSTVINGFFK-------EGDLDKMLDQRISPNVVTYNSIIAALCK----------AQTVD 133

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V   M   G+ PD  +++ ++H +  + QP+ ++  L  M+  G+ P V TY+S++
Sbjct: 134 KAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLM 193

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A ++   M + G+ P   TY    + Y  +        L   M  +G+ 
Sbjct: 194 DYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 253

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN + ++IL+  +    +++    +++ ++  GL P+  +Y  +I  LC+  + ++A  
Sbjct: 254 -PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAML 312

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           YF +MI++GL P  + + +L   L   D       L  ++ +  I   + F N
Sbjct: 313 YFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFN 365



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 133/280 (47%), Gaps = 26/280 (9%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIE- 76
           A     E++ RG+ P+V +YN+LLNG+C           E   + A ++   M   G + 
Sbjct: 36  ARHVFDELLRRGI-PDVFSYNILLNGLCD----------ENRSQEALELLHIMADDGGDC 84

Query: 77  -PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
            PDV S+S V++ + +    +  LDK   M ++ I P V TY+S++  LC    ++ A E
Sbjct: 85  PPDVVSYSTVINGFFK----EGDLDK---MLDQRISPNVVTYNSIIAALCKAQTVDKAME 137

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           +L  MV++GV P   TYN     +        A+   ++M+ DG+  P++ +YN L+   
Sbjct: 138 VLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGV-EPDVVTYNSLMDYL 196

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
               R    R+I++ +   GL PD+ +Y  L+ G   K    E       M+  G+ P  
Sbjct: 197 CKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNH 256

Query: 256 VTFETLY-----RGLIQSDMLRTWRRLKKKLDEESITFGS 290
             F  L      +  ++  ML   +  ++ L+  ++T+G+
Sbjct: 257 YVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGT 296



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 80/202 (39%), Gaps = 35/202 (17%)

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG----------- 179
           EDA  +  E++R G+ P   +YN           +  A++L   M +DG           
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 180 ------------------LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
                                PN+ +YN +I        +D   E+   +  SG+ PD  
Sbjct: 93  TVINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCM 152

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL---- 277
           +Y  ++HG C   + KEA  +  +M   G+ P  VT+ +L   L ++      R++    
Sbjct: 153 TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSM 212

Query: 278 -KKKLDEESITFGSEFQNYHFK 298
            K+ L  +  T+G+  Q Y  K
Sbjct: 213 TKRGLKPDITTYGTLLQGYATK 234



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 77/151 (50%), Gaps = 10/151 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +++ L+  + K  +++ A     +M ++G+ PN VTY  +++ +C+      S R E  +
Sbjct: 258 VFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCK------SGRVEDAM 311

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              E++ DE    G+ PD   ++ ++H      + + + +    M ++GIC +   ++S+
Sbjct: 312 LYFEQMIDE----GLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSI 367

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
           +   C  GR+ ++ +L   MVR GV P   T
Sbjct: 368 IDSHCKEGRVIESGKLFDLMVRIGVKPDIIT 398


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 132/276 (47%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G CK   +D A+     MI++GV PN  TY  L++G                 +
Sbjct: 205 YTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKW----------K 254

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++  EM   G++PD   ++++L    +  +   + +  + +  KGI P V  Y  ++
Sbjct: 255 EVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILL 314

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               + G + +    L  MV NGV P    +N  F  Y  +   + AM ++ +M++  L 
Sbjct: 315 HGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLS 374

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  LI     L R+D     +N +   G+ PD+  ++ L++GLC   KW++A +
Sbjct: 375 -PNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEE 433

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F E++++G+    V F TL   L +   +   +RL
Sbjct: 434 LFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRL 469



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF---- 56
           +Y  L+   CK  R   A      +I +G++PNV  Y +LL+G     SL     F    
Sbjct: 274 IYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLM 333

Query: 57  ---------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                +  I  A  +FD+MR + + P++ ++  ++    +  + 
Sbjct: 334 VGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRV 393

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             ++ K N M ++G+ P +  +SS+V  LC+  + E AEEL  E++  G+      +N  
Sbjct: 394 DDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTL 453

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                       A +L   M   G+  P++ SYN L+       R+D   ++ + +   G
Sbjct: 454 MCNLCREGRVMEAQRLIDLMLRVGV-RPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIG 512

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           L PD  +Y  L+HG C+ ++  +A   F EM+ KGL P  VT+ T+  GL Q+
Sbjct: 513 LKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQT 565



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 137/301 (45%), Gaps = 11/301 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L+   C+  R+  A+R +  M+  GV P+V++YN L++G C              I 
Sbjct: 450 FNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHC----------LTGRID 499

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+ D +   G++PD  +++ +LH Y +A +   +      M  KG+ P V TY++++
Sbjct: 500 EAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTIL 559

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR  +A+EL   M+ +    +  TYN            + A K++  +    L 
Sbjct: 560 HGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQ 619

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++ + NI+IG  +   R +   +++  +   GL PD+++Y ++   L ++   +E  +
Sbjct: 620 L-DIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDE 678

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYR 301
            F  M E G  P       L R L+    +        KLDE++ +  +   +     Y 
Sbjct: 679 LFSAMEENGTAPNSRMLNALVRWLLHRGDINRAGAYLSKLDEKNFSLEASTTSMLISIYS 738

Query: 302 R 302
           R
Sbjct: 739 R 739



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 132/296 (44%), Gaps = 14/296 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGV---EPNVVTYNVLLNGVCRRASLHPSERFEK 58
           Y+ L+ G+C   R + A   L  M + G     PNVVTY  +++G+C+           +
Sbjct: 167 YSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCK----------AQ 216

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            +  A+ VF  M  +G+ P+  +++ ++H Y    + +  +  L  M   G+ P    Y+
Sbjct: 217 MVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYA 276

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++  LC  GR  +A  +   ++R G+ P+   Y      Y      +        M  +
Sbjct: 277 VLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGN 336

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P+ H +NI+   +     +D    I++ ++   L P++ +Y  LI  LC+  +  +
Sbjct: 337 GVS-PDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDD 395

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           A   F +MI++G+ P    F +L  GL   D       L  ++ ++ I   + F N
Sbjct: 396 AVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFN 451



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 19/239 (7%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH---QPQLSLDKLNFMKEK---GICPT 113
           + +A K+FDEM        V +F+ +L   SRA      +L +   N M  +    + P+
Sbjct: 32  LNDALKLFDEMLTHARPASVRAFNQLLTAVSRARCSSASELVVSLFNRMIRECSIKVAPS 91

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN----GAM 169
             TY+ ++ C C  GR++      G +++ G          F +  +G  DA        
Sbjct: 92  SFTYTILIGCFCRMGRLKHGFAAFGLILKTGW--RVNDTVIFSQLLKGLCDAKRVDEATD 149

Query: 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG---PDLDSYTML 226
            L R+M E G C P++ SY+IL+  F    R +   E+ + +   G G   P++ +YT +
Sbjct: 150 ILLRRMPEFG-CTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTV 208

Query: 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           I GLC+ Q    A   F  MI+KG+ P   T+  L  G +    +  W+ + + L E S
Sbjct: 209 IDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLS---IGKWKEVVQMLQEMS 264



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 109/253 (43%), Gaps = 18/253 (7%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGV----CRRASLHPSERFEKTIRNAEKVFDEMRVR 73
           A +   EM+      +V  +N LL  V    C  AS      F + IR       E  ++
Sbjct: 35  ALKLFDEMLTHARPASVRAFNQLLTAVSRARCSSASELVVSLFNRMIR-------ECSIK 87

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG--ICPTVATYSSVVKCLCSCGRIE 131
            + P   +++I++  + R  + +        + + G  +  TV  +S ++K LC   R++
Sbjct: 88  -VAPSSFTYTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTV-IFSQLLKGLCDAKRVD 145

Query: 132 DAEE-LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG--LCVPNMHSY 188
           +A + LL  M   G  P   +Y+   K +   K A  A++L   M +DG     PN+ +Y
Sbjct: 146 EATDILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTY 205

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
             +I        +D  + ++  +   G+ P+  +YT LIHG     KWKE  Q   EM  
Sbjct: 206 TTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMST 265

Query: 249 KGLLPQKVTFETL 261
            GL P    +  L
Sbjct: 266 HGLQPDCYIYAVL 278


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 132/260 (50%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I   CK   +D A   L  M++ GV P+ +TYN +++G C  +S  P E       
Sbjct: 119 YNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFC--SSGQPKE------- 169

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A     +MR  G+EPDV +++ ++    +  +   +    + M ++G+ P + TY +++
Sbjct: 170 -AIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLL 228

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +   + G + +   LL  MVRNG+ P+   ++     Y  ++    AM ++ +M++ GL 
Sbjct: 229 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLN 288

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +Y  +I +     R++     +  +   GL PD   Y  LIH LC   KW++A +
Sbjct: 289 -PNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEE 347

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F+EM+++G+    + F ++
Sbjct: 348 LFLEMLDRGICLSTIFFNSI 367



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 144/293 (49%), Gaps = 18/293 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I G+ K   +D       +M+++ + PNVVTYN ++  +C+           +T+ 
Sbjct: 91  YSTVINGFFKEGDLD-------KMLDQRISPNVVTYNSIIAALCK----------AQTVD 133

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V   M   G+ PD  +++ ++H +  + QP+ ++  L  M+  G+ P V TY+S++
Sbjct: 134 KAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLM 193

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A ++   M + G+ P   TY    + Y  +        L   M  +G+ 
Sbjct: 194 DYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 253

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN + ++IL+  +    +++    +++ ++  GL P+  +Y  +I  LC+  + ++A  
Sbjct: 254 -PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAML 312

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           YF +MI++GL P  + + +L   L   D       L  ++ +  I   + F N
Sbjct: 313 YFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFN 365



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 133/280 (47%), Gaps = 26/280 (9%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIE- 76
           A     E++ RG+ P+V +YN+LLNG+C           E   + A ++   M   G + 
Sbjct: 36  ARHVFDELLRRGI-PDVFSYNILLNGLCD----------ENRSQEALELLHIMADDGGDC 84

Query: 77  -PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
            PDV S+S V++ + +    +  LDK   M ++ I P V TY+S++  LC    ++ A E
Sbjct: 85  PPDVVSYSTVINGFFK----EGDLDK---MLDQRISPNVVTYNSIIAALCKAQTVDKAME 137

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           +L  MV++GV P   TYN     +        A+   ++M+ DG+  P++ +YN L+   
Sbjct: 138 VLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGV-EPDVVTYNSLMDYL 196

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
               R    R+I++ +   GL PD+ +Y  L+ G   K    E       M+  G+ P  
Sbjct: 197 CKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNH 256

Query: 256 VTFETLY-----RGLIQSDMLRTWRRLKKKLDEESITFGS 290
             F  L      +  ++  ML   +  ++ L+  ++T+G+
Sbjct: 257 YVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGT 296



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 120/273 (43%), Gaps = 37/273 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +++ L+  + K  +++ A     +M ++G+ PN VTY  +++ +C+      S R E  +
Sbjct: 258 VFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCK------SGRVEDAM 311

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              E++ DE    G+ PD   ++ ++H      + + + +    M ++GIC +   ++S+
Sbjct: 312 LYFEQMIDE----GLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSI 367

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  GR+ ++ +L   MVR GV P   T   F      R+D +  + +Y        
Sbjct: 368 IDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRFLGS--ARRDYSLFVNIY-------F 418

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREI------WNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
              NM             N  D  +E        N    S  GP L +Y +++HGLC+ +
Sbjct: 419 IFTNMS------------NTGDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHGLCKNK 466

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
              +A + F  +    L  +  TF  +   L++
Sbjct: 467 LTDDALRMFQNLCLMDLKLEARTFNIMIDALLK 499



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 80/202 (39%), Gaps = 35/202 (17%)

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG----------- 179
           EDA  +  E++R G+ P   +YN           +  A++L   M +DG           
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 180 ------------------LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
                                PN+ +YN +I        +D   E+   +  SG+ PD  
Sbjct: 93  TVINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCM 152

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL---- 277
           +Y  ++HG C   + KEA  +  +M   G+ P  VT+ +L   L ++      R++    
Sbjct: 153 TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSM 212

Query: 278 -KKKLDEESITFGSEFQNYHFK 298
            K+ L  +  T+G+  Q Y  K
Sbjct: 213 TKRGLKPDITTYGTLLQGYATK 234



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 135/337 (40%), Gaps = 54/337 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I   CK  R++ A  +  +MI+ G+ P+ + YN L++ +C        +++EK   
Sbjct: 294 YGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLC------IFDKWEK--- 344

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT----- 116
            AE++F EM  RGI      F+ ++  + +  +   S    + M   G+ P + T     
Sbjct: 345 -AEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRFL 403

Query: 117 ------YSSVVKC---LCSCGRIEDAEELL------GEMVRNGVC-PSAETYNCFFKEYR 160
                 YS  V       +     D E+        G    N    P   TYN       
Sbjct: 404 GSARRDYSLFVNIYFIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHGLC 463

Query: 161 GRKDANGAMKLYRQMKEDGLCVPNM----HSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             K  + A+++++      LC+ ++     ++NI+I   + + R D  ++++     +GL
Sbjct: 464 KNKLTDDALRMFQN-----LCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGL 518

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  +Y ++   +  +   +E  Q F+ M + G          + R L+Q   +     
Sbjct: 519 VPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGT 578

Query: 277 LKKKLDEESITF-------------GSEFQNYH-FKP 299
               +DE+  +              G ++Q YH F P
Sbjct: 579 YLSMIDEKHFSLEASTASLFIDLLSGGKYQEYHIFLP 615



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/238 (18%), Positives = 92/238 (38%), Gaps = 66/238 (27%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SLI+  C  ++ + AE    EM++RG+  + + +N +++  C+          E  +
Sbjct: 328 VYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCK----------EGRV 377

Query: 61  RNAEKVFDEMRVRGIEPDVTS-----------FSIVLHVY----------SRAHQPQLSL 99
             + K+FD M   G++PD+ +           +S+ +++Y           +  +  ++ 
Sbjct: 378 IESGKLFDLMVRIGVKPDIITLGRFLGSARRDYSLFVNIYFIFTNMSNTGDKEKETPVNT 437

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCS--------------------------------- 126
           +  N        P + TY+ ++  LC                                  
Sbjct: 438 NGGNTASNSSGGPFLGTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDAL 497

Query: 127 --CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
              GR ++A++L      NG+ P+  TY    +   G+       +L+  M+++G  V
Sbjct: 498 LKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTV 555


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 144/301 (47%), Gaps = 20/301 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI+G C  NR   A R LG+M + G  P+ +TYN +L+G+C++  L+          
Sbjct: 200 FNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLN---------- 249

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +M+ +G+ P+ T+F+I++    R    + + + +  M +  + P   TY+ ++
Sbjct: 250 EARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMI 309

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GRI +A  L  EM    + P   TYN           +    KL  +M+  G+ 
Sbjct: 310 SGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGM- 368

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +YN+++  F+   +MD V +    ++ SG  PD+ +Y  LI   C+  K  EA +
Sbjct: 369 KPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFR 428

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS-------DMLRTWRRLKKKLDEESITFGSEFQN 294
              EM  KGL    VT  T+ R L +        D+L + RR    +DE  +++G+    
Sbjct: 429 LMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDE--VSYGTLIIG 486

Query: 295 Y 295
           Y
Sbjct: 487 Y 487



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 140/298 (46%), Gaps = 22/298 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G+CK  RI  A R   EM    + P+VVTYN L+NG     S    E F     
Sbjct: 305 YNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGS--SEEGF----- 357

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K+ +EM  RG++P+  ++++++  + +  +       +  M+E G  P + TY++++
Sbjct: 358 ---KLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLI 414

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++++A  L+ EM R G+     T N   +     +  + A  L    +  G  
Sbjct: 415 SWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYF 474

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V  +    ++IG F        +R +W+++K   + P + +Y  +I GLC+  K  +A  
Sbjct: 475 VDEVSYGTLIIGYFKHEKASQALR-LWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAID 533

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
              E++E GL+P ++T+ T+  G  Q   +           E++  F ++    +FKP
Sbjct: 534 KLDELLESGLVPDEITYNTIIHGYCQEGQV-----------EKAFQFHNKMVEKNFKP 580



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 131/283 (46%), Gaps = 11/283 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI   CK+ ++D A R + EM  +G++ + VT N +L  +CR          E+ + 
Sbjct: 410 YNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCR----------ERKLD 459

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +    R RG   D  S+  ++  Y +  +   +L   + MKEK I P++ TY+S++
Sbjct: 460 EAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMI 519

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+   A + L E++ +G+ P   TYN     Y        A + + +M E    
Sbjct: 520 AGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNF- 578

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ + N L+        ++   +++N     G   D  SY  +I  LC+++++ EA  
Sbjct: 579 KPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFD 638

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
              EM EK L P   T+  +  GL  +  ++       K+ E+
Sbjct: 639 LLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEK 681



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 132/281 (46%), Gaps = 14/281 (4%)

Query: 6   IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEK 65
           I  +    R   A +    M   G++P ++T N LLN + R  S H       +IR ++ 
Sbjct: 131 IGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSH-------SIRLSKA 183

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           VF +    G++ +  SF+I++H     ++   ++  L  M++ G  P   TY++++  LC
Sbjct: 184 VFTDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLC 243

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFK---EYRGRKDANGAMKLYRQMKEDGLCV 182
             GR+ +A +LL +M   G+ P+  T+N            K+A   ++L  Q       V
Sbjct: 244 KKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNS----VV 299

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+  +YN++I  F    R+     +  +++   L PD+ +Y  LI+G  E    +E  + 
Sbjct: 300 PDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKL 359

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
             EM  +G+ P  VT+  + +  ++   +    +  +K++E
Sbjct: 360 IEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEE 400



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 86/164 (52%), Gaps = 16/164 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I+G+C+  +++ A +F  +M+E+  +P+VVT N LL G+C+          E  + 
Sbjct: 550 YNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCK----------EGMLE 599

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F+    +G + D  S++ ++    +  +   + D L  M+EK + P   TY++++
Sbjct: 600 KALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAIL 659

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
             L   GR++DAEE + ++   G   +       F E   R+DA
Sbjct: 660 GGLTDAGRMKDAEEFISKIAEKGKSENQ------FLELGKRQDA 697



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 96/217 (44%), Gaps = 9/217 (4%)

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC---SCGRIEDAEELLG 138
             I +  Y    +P  +    N MK  G+ PT+ T ++++  L    S   I  ++ +  
Sbjct: 127 LDISIGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFT 186

Query: 139 EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL 198
           + ++ GV  +  ++N              A+++  +M++ G C P+  +YN ++      
Sbjct: 187 DFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYG-CPPDNITYNTILDGLCKK 245

Query: 199 NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
            R++  R++  D+K  GL P+  ++ +L+ G C     KEA      M +  ++P   T+
Sbjct: 246 GRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTY 305

Query: 259 ETLYRGLIQSDMLRTWRRLKK-----KLDEESITFGS 290
             +  G  +   +    RL++     KL  + +T+ +
Sbjct: 306 NVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNT 342



 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 22/131 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I   CK  R   A   L EM E+ + P+  TYN +L G+     +  +E F   I 
Sbjct: 620 YNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIA 679

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K  ++    G   D  +  I         +P                P    YS+ +
Sbjct: 680 EKGKSENQFLELGKRQDARTSEI-------PQEPH---------------PNAIAYSNKI 717

Query: 122 KCLCSCGRIED 132
             LCS GR +D
Sbjct: 718 NELCSQGRYKD 728


>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1202

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 149/303 (49%), Gaps = 20/303 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ L  G+   ++ D A       ++ G++ N  T ++LLN +C+          E  I 
Sbjct: 695 FSILFDGYSSNDKADAALGVYETAVDSGLKMNAYTCSILLNALCK----------EGQIE 744

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE++      +G+ P+   ++ ++  YSR      +  K++ M+++G+ P    Y+ ++
Sbjct: 745 KAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNCLI 804

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C  G +E+AE+ + +M   GV PS ETYN     Y  + + +    L ++M+++G  
Sbjct: 805 RTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDLLKEMEDNG-T 863

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+ SY  LI      +++   + +  D++  G+ P++  Y MLI G C K K ++A +
Sbjct: 864 MPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFR 923

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS-------DMLRTWRRLKKKLDEESITFGSEFQN 294
           +  EM +KG+    VT+ TL  GL  +       DML    R  K L  +  T+ S    
Sbjct: 924 FSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISR--KGLKPDVFTYNSLISG 981

Query: 295 YHF 297
           Y F
Sbjct: 982 YRF 984



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 134/265 (50%), Gaps = 15/265 (5%)

Query: 1    MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
            +Y  LI G C   +I+ A RF  EM ++G+E N+VTYN L++G+     L          
Sbjct: 904  IYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLA--------- 954

Query: 61   RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              AE +  E+  +G++PDV +++ ++  Y  A   Q  +     MK  GI PT+ TY  +
Sbjct: 955  -EAEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTLKTYHLL 1013

Query: 121  VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
            +  LC+   IE  +++ GEM    + P    YN     Y    D + A  L +QM E  +
Sbjct: 1014 IS-LCTKEGIELTKKIFGEM---SLQPDLLVYNGVLHCYAVHGDMDKAFNLQKQMIEKSI 1069

Query: 181  CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             + +  +YN LI   + + ++  VR + +++K   + P+ D+Y +++ G CE + +  A 
Sbjct: 1070 GL-DKTTYNSLILGQLKVGKLCEVRSLIDEMKAREMEPEADTYDIIVKGHCEMKDYMGAY 1128

Query: 241  QYFVEMIEKGLLPQKVTFETLYRGL 265
             ++ EM EKGLL      + L  GL
Sbjct: 1129 VWYREMQEKGLLLDVCIGDELVSGL 1153



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 121/263 (46%), Gaps = 11/263 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY   I    K++ +         M    + P V  YNVL++G+C+           + +
Sbjct: 554 MYGKAIQAAVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLCKV----------RQM 603

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           ++AE++FDEM  R + P + +++ ++  Y +   P+ S      MK   I P++ T++++
Sbjct: 604 KDAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNTL 663

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +K L   G +EDAE +L EM   G  P A T++  F  Y     A+ A+ +Y    + GL
Sbjct: 664 LKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYETAVDSGL 723

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            + N ++ +IL+       +++   EI       GL P+   Y  +I G   K     A 
Sbjct: 724 KM-NAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLVGAR 782

Query: 241 QYFVEMIEKGLLPQKVTFETLYR 263
                M ++G+ P  + +  L R
Sbjct: 783 MKIDAMEKQGMKPDHLAYNCLIR 805



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 128/282 (45%), Gaps = 26/282 (9%)

Query: 5    LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS----ERFEKT- 59
            L+   CK  +I+ AE  LG  + +G+ PN V YN +++G  R+  L  +    +  EK  
Sbjct: 733  LLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQG 792

Query: 60   --------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
                                + NAE+  ++M+++G+ P V +++I++  Y R ++     
Sbjct: 793  MKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCF 852

Query: 100  DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
            D L  M++ G  P V +Y +++ CLC   ++ +A+ +  +M   GV P+   YN      
Sbjct: 853  DLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDGC 912

Query: 160  RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
              +     A +   +M + G+ + N+ +YN LI       ++    ++  ++   GL PD
Sbjct: 913  CSKGKIEDAFRFSEEMFKKGIEL-NLVTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPD 971

Query: 220  LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            + +Y  LI G       +     + EM   G+ P   T+  L
Sbjct: 972  VFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTLKTYHLL 1013



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 132/276 (47%), Gaps = 15/276 (5%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y  LI G+ +    D     L EM + G  PNVV+Y  L+N +C+ + L           
Sbjct: 835  YNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKL----------L 884

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             A+ V  +M  RG+ P+V  +++++       + + +      M +KGI   + TY++++
Sbjct: 885  EAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLI 944

Query: 122  KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              L   G++ +AE++L E+ R G+ P   TYN     YR   +    + LY +MK  G+ 
Sbjct: 945  DGLSMNGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGI- 1003

Query: 182  VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             P + +Y++LI +      +++ ++I+ ++    L PDL  Y  ++H         +A  
Sbjct: 1004 KPTLKTYHLLISLCTK-EGIELTKKIFGEM---SLQPDLLVYNGVLHCYAVHGDMDKAFN 1059

Query: 242  YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
               +MIEK +   K T+ +L  G ++   L   R L
Sbjct: 1060 LQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSL 1095



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 89/212 (41%), Gaps = 1/212 (0%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           K I  A  +F  +R  GI P   S +++L    +  Q +++++    + E    P+   Y
Sbjct: 496 KMISEAADLFFALRNEGIFPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMY 555

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
              ++       +    EL   M  + + P+   YN         +    A +L+ +M  
Sbjct: 556 GKAIQAAVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLA 615

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
             L +P++ +YN LI  +      +   ++   +K   + P L ++  L+ GL +    +
Sbjct: 616 RRL-LPSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNTLLKGLFKAGMVE 674

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           +A     EM ++G +P   TF  L+ G   +D
Sbjct: 675 DAENVLTEMKDQGFVPDAFTFSILFDGYSSND 706



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/196 (19%), Positives = 86/196 (43%), Gaps = 6/196 (3%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           ++ +GI P+  + + ++  L    +      +   ++ +   PS   Y    +      D
Sbjct: 508 LRNEGIFPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSD 567

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
               ++L+ +MK D +  P +  YN+LI     + +M    ++++++    L P L +Y 
Sbjct: 568 VGKGLELFNRMKHDRIS-PTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYN 626

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            LI G C+    +++ +    M    + P  +TF TL +GL ++ M+     +  ++ ++
Sbjct: 627 TLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQ 686

Query: 285 -----SITFGSEFQNY 295
                + TF   F  Y
Sbjct: 687 GFVPDAFTFSILFDGY 702



 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 10/140 (7%)

Query: 1    MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
            +Y  +++ +     +D A     +MIE+ +  +  TYN L+ G  +   L          
Sbjct: 1040 VYNGVLHCYAVHGDMDKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLC--------- 1090

Query: 61   RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                 + DEM+ R +EP+  ++ I++  +        +      M+EKG+   V     +
Sbjct: 1091 -EVRSLIDEMKAREMEPEADTYDIIVKGHCEMKDYMGAYVWYREMQEKGLLLDVCIGDEL 1149

Query: 121  VKCLCSCGRIEDAEELLGEM 140
            V  L    R ++AE ++ EM
Sbjct: 1150 VSGLKEEWRSKEAENVISEM 1169


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 151/329 (45%), Gaps = 53/329 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+++ G  K    D    +  +M+    EP ++TY VL++G+C+    H  ER      
Sbjct: 109 YTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKA---HKVER------ 159

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  VF+EM  +G +PD+ ++S ++   S+A +   +   ++ M  +G  PT   Y+S+V
Sbjct: 160 -ACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIV 218

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAM------------ 169
             LC CGRI++A + + EM R  + P  +TY+     Y G      A             
Sbjct: 219 AGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCA 278

Query: 170 -----------------------KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
                                  K++  M E G C P+MH+Y I+I  F     M     
Sbjct: 279 PDTISYTMFIEALYSIGRREEAEKVFETMVEKG-CKPDMHTYGIIIDNFCKEGSMAAATH 337

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +   +  + + P+   YTM++ G  +  + +EA + +  +++ G+LP  VT+ T+   L 
Sbjct: 338 VLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALC 397

Query: 267 Q-------SDMLRTWRRLKKKLDEESITF 288
           +        ++LR  +R K++L+   +T+
Sbjct: 398 KLKKMDEALELLREMQRRKEELEPSIVTY 426



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 140/283 (49%), Gaps = 15/283 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ ++ G+  + +++ A   + EM +R   P+ ++Y + +       +L+   R E+   
Sbjct: 249 YSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIE------ALYSIGRREE--- 299

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEKVF+ M  +G +PD+ ++ I++  + +      +   L  M +  + P    Y+ ++
Sbjct: 300 -AEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIM 358

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM---KED 178
                  R+E+A EL   ++++G+ PS  TYN         K  + A++L R+M   KE+
Sbjct: 359 DGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEE 418

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
               P++ +Y+++I     +   +   ++  ++  +G+ PD  +YT LI  L    K   
Sbjct: 419 --LEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSR 476

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           A +   EM++ G+ P   T+ TL + L +SD+   W  L++ +
Sbjct: 477 AMELLEEMLKAGIFPDDHTYGTLVQILCRSDVDAAWDLLQEMM 519



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 99/190 (52%), Gaps = 14/190 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT ++ G+ K +R++ A      +++ G+ P+ VTYN ++N +C+           K +
Sbjct: 353 IYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKL----------KKM 402

Query: 61  RNAEKVFDEMRVRG--IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
             A ++  EM+ R   +EP + ++S+++H   +    + + D L  M + G+ P   TY+
Sbjct: 403 DEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYT 462

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           S+++ L   G++  A ELL EM++ G+ P   TY     +   R D + A  L ++M  +
Sbjct: 463 SLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLV-QILCRSDVDAAWDLLQEMMRN 521

Query: 179 GLCVPNMHSY 188
           G   PN  ++
Sbjct: 522 G-HTPNEFTF 530



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           QLS D L F +     P V++++ +++   +    E    LL EM   G+  +  T+   
Sbjct: 12  QLS-DALGFFQSSISEPNVSSFNILLRGFAARDDFEVVNALLREMKARGITSNGATHGVI 70

Query: 156 FKEYRGRKDANGAMKLYRQMKEDG------LCVPNMHSYNILI-GMFMALNRMDMVREIW 208
                 R+D + A+  +    E+       +  P+  +Y  ++ G+F A N  D   E +
Sbjct: 71  LSALCARRDLDKAVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLFKAGN-YDAGLEYY 129

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             +  S   P L +YT+L+ GLC+  K + AC  F EMI KG  P  + + +L  GL ++
Sbjct: 130 EKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKA 189

Query: 269 DMLRTWRRL 277
             +   R+L
Sbjct: 190 GRVDEARKL 198



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/320 (20%), Positives = 125/320 (39%), Gaps = 39/320 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTI 60
           +  L+ G+   +  ++    L EM  RG+  N  T+ V+L+ +C R  L  +   F    
Sbjct: 32  FNILLRGFAARDDFEVVNALLREMKARGITSNGATHGVILSALCARRDLDKAVSYFNSRT 91

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++F+ +      PD  +++ ++    +A      L+    M      PT+ TY+ +
Sbjct: 92  EEACRLFEAIEA----PDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVL 147

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE--- 177
           V  LC   ++E A ++  EM+R G  P    Y+            + A KL   M     
Sbjct: 148 VDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGP 207

Query: 178 -----------DGLC--------------------VPNMHSYNILIGMFMALNRMDMVRE 206
                       GLC                     P + +Y+ ++  ++ + +++    
Sbjct: 208 PPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFA 267

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +  ++      PD  SYTM I  L    + +EA + F  M+EKG  P   T+  +     
Sbjct: 268 VMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFC 327

Query: 267 QSDMLRTWRRLKKKLDEESI 286
           +   +     + + +D+ ++
Sbjct: 328 KEGSMAAATHVLRLMDKAAV 347



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 19/161 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG--VEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           Y ++I   CK+ ++D A   L EM  R   +EP++VTY+++++G+ +             
Sbjct: 389 YNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGK------------- 435

Query: 60  IRNAEKVFD---EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           +   E+ FD   EM   G+ PD  +++ ++   + A +   +++ L  M + GI P   T
Sbjct: 436 VGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHT 495

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           Y ++V+ LC    ++ A +LL EM+RNG  P+  T+    K
Sbjct: 496 YGTLVQILCR-SDVDAAWDLLQEMMRNGHTPNEFTFKAVEK 535



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 18/223 (8%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           EPNV ++N+LL G   R      + FE  + NA  +  EM+ RGI  +  +  ++L    
Sbjct: 26  EPNVSSFNILLRGFAAR------DDFE--VVNA--LLREMKARGITSNGATHGVILSALC 75

Query: 91  RAHQPQLSLDKLNFMKEKGI-------CPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
                  ++   N   E+          P   TY+++V  L   G  +   E   +MV +
Sbjct: 76  ARRDLDKAVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLFKAGNYDAGLEYYEKMVAS 135

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
              P+  TY               A  ++ +M   G   P++ +Y+ LI       R+D 
Sbjct: 136 KCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKG-HKPDIIAYSSLIDGLSKAGRVDE 194

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
            R++ + +   G  P   +YT ++ GLC+  + +EA +   EM
Sbjct: 195 ARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEM 237


>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
 gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
 gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 140/293 (47%), Gaps = 26/293 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + SL+ G+C +NR   A   + +++  G EPNVV YN +++ +C +  ++ +    K ++
Sbjct: 152 FGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMK 211

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     + ++  +M   GI PDV +FS ++ VY +  Q  
Sbjct: 212 KMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLL 271

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +  + N M ++ + P + TY+S++  LC  G +++A+++L  +V  G  P+A TYN   
Sbjct: 272 EAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLI 331

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y   K  +  MK+   M  DG+   +  +YN L   +    +     ++   +   G+
Sbjct: 332 NGYCKAKRVDDGMKILCVMSRDGV-DGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGV 390

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            PD+ ++ +L+ GLC+  K  +A     ++ +   +   +T+  + +GL ++D
Sbjct: 391 HPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKAD 443



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 132/267 (49%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI  +C+  R+ +A   LG+M++ G EP++VT+  L+NG C     H +  +E    
Sbjct: 117 FTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFC-----HVNRFYE---- 167

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D++   G EP+V  ++ ++       Q   +LD L  MK+ GI P V TY+S++
Sbjct: 168 -AMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLI 226

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G    +  +L +M+R G+ P   T++     Y        A K Y +M +  + 
Sbjct: 227 TRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVN 286

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN LI        +D  +++ N +   G  P+  +Y  LI+G C+ ++  +  +
Sbjct: 287 -PNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMK 345

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
               M   G+     T+ TLY+G  Q+
Sbjct: 346 ILCVMSRDGVDGDTFTYNTLYQGYCQA 372



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 129/277 (46%), Gaps = 16/277 (5%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           +M E    P++V ++ LL  + +        ++E  I     +F  + + GI  D+ SF+
Sbjct: 69  DMAESHPLPSIVDFSRLLIAIAKL------NKYEAVI----SLFRHLEMLGISHDLYSFT 118

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            ++  + R  +  L+L  L  M + G  P++ T+ S+V   C   R  +A  L+ ++V  
Sbjct: 119 TLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGL 178

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G  P+   YN        +   N A+ + + MK+ G+  P++ +YN LI          +
Sbjct: 179 GYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGI-RPDVVTYNSLITRLFHSGTWGV 237

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
              I +D+   G+ PD+ +++ LI    ++ +  EA + + EMI++ + P  VT+ +L  
Sbjct: 238 SARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLIN 297

Query: 264 GLIQSDMLRTWRR-----LKKKLDEESITFGSEFQNY 295
           GL    +L   ++     + K     ++T+ +    Y
Sbjct: 298 GLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGY 334



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 11/180 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+CK  R+D   + L  M   GV+ +  TYN L  G C+               
Sbjct: 327 YNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSA--------- 377

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEKV   M   G+ PD+ +F+I+L       +   +L +L  +++      + TY+ ++
Sbjct: 378 -AEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIII 436

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM-KEDGL 180
           K LC   ++EDA  L   +   GV P   TY       R ++    A +LYR+M KEDGL
Sbjct: 437 KGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHELYRKMQKEDGL 496


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 127/268 (47%), Gaps = 14/268 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--RASLHPSERFEKT 59
           Y+S+I G C + R+  A +   +M + G +PN   YN L++G C+  R S          
Sbjct: 442 YSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTS---------- 491

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
             +A +++ +M   G  P V +++ ++    +A + Q +      M E G  P + TY S
Sbjct: 492 --DAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGS 549

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +++ L S  +I+DA  +  +++  G+      +N            + A+ ++  MKE  
Sbjct: 550 LIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKK 609

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C PN+ +YN L+        +D    +W  +   GL PD+ SY   I GLC   +  E 
Sbjct: 610 NCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEG 669

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            Q   E++ +G++P  +T+  L R +I+
Sbjct: 670 IQLLDEVLSRGIIPTVITWNILVRAVIK 697



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 117/248 (47%), Gaps = 7/248 (2%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G  P + ++N LL+   R      ++ F  ++ +    F     R I P++ +++IVL  
Sbjct: 114 GCNPGIRSHNALLDAFVRARRFSDADAFFASLSHG--AFG----RRIAPNLQTYNIVLRS 167

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
                    ++   + ++ + + P   TYS+++  L    R++ A +LL EM R+ V P 
Sbjct: 168 LCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPD 227

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
              YN          +    M+++ ++ +D    PN+ +YN+++       R   V E+W
Sbjct: 228 VVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVW 287

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             +  + L PD+ +Y +LIHGLC       A + + E+I+ GL+     + +L +G  Q+
Sbjct: 288 ERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQA 347

Query: 269 DMLR-TWR 275
             ++  W+
Sbjct: 348 GRVQEAWK 355



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 132/294 (44%), Gaps = 12/294 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++L+ G  K +R+D A   L EM    V+P+VV YN LL G C +A       FEK +R
Sbjct: 196 YSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALLGG-CFKAG-----EFEKVMR 249

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             +K+  +    G  P++ +++++L    +  + +   +    M    + P V TY  ++
Sbjct: 250 VWDKLVKD---PGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILI 306

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G ++ A  +  E+++ G+   A  YN   K +        A K +      GL 
Sbjct: 307 HGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGL- 365

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDV-KGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             N+ +YNI+I        +D   E+W+ + K     PD  ++  LIHGLC+     +A 
Sbjct: 366 -RNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAF 424

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
             F E    G      ++ ++  GL     L    ++ +K+D++     S   N
Sbjct: 425 TIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYN 478



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/322 (20%), Positives = 140/322 (43%), Gaps = 47/322 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMI-ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y +L+ G  K    +   R   +++ + G  PN+ TYNV+L+G+C+        RF++  
Sbjct: 231 YNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFG------RFKEV- 283

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               +V++ M    ++PDV ++ I++H   R+     +    + + + G+    A Y+S+
Sbjct: 284 ---GEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSL 340

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           VK  C  GR+++A +        G+  +  TYN   K        + A++L+  +++D  
Sbjct: 341 VKGFCQAGRVQEAWKFWDSAGFAGL-RNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVA 399

Query: 181 CVPN-----------------------------------MHSYNILIGMFMALNRMDMVR 205
           C+P+                                   + SY+ +I     + R+    
Sbjct: 400 CIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAV 459

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +++  +   G  P+   Y  LI G C+  +  +A + + +M + G  P  +T+ TL  GL
Sbjct: 460 KVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGL 519

Query: 266 IQSDMLRTWRRLKKKLDEESIT 287
            +++  +    + +++ E   T
Sbjct: 520 CKAEKYQEASSVAREMVENGFT 541



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 46/158 (29%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           M+  LI+G C   ++D A     +M E+    PN+VTYN L++G+               
Sbjct: 581 MHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETG----------Y 630

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           I  A  ++  +   G+EPD+ S                                   Y++
Sbjct: 631 IDKAATLWTSITEDGLEPDIIS-----------------------------------YNT 655

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
            +K LCSC RI +  +LL E++  G+ P+  T+N   +
Sbjct: 656 RIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVR 693



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 81/201 (40%), Gaps = 37/201 (18%)

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKE-KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR 142
           +VL  +SRA  P  +LD    +    G  P + ++++++       R  DA+     +  
Sbjct: 88  VVLSAFSRAIMPDAALDAFRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASL-- 145

Query: 143 NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202
                   ++  F     GR+ A                 PN+ +YNI++    A   +D
Sbjct: 146 --------SHGAF-----GRRIA-----------------PNLQTYNIVLRSLCARGDLD 175

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
               +++ ++   + PD  +Y+ L+ GL ++ +   A     EM    + P  V +  L 
Sbjct: 176 RAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALL 235

Query: 263 RGLIQS----DMLRTWRRLKK 279
            G  ++     ++R W +L K
Sbjct: 236 GGCFKAGEFEKVMRVWDKLVK 256


>gi|302763707|ref|XP_002965275.1| hypothetical protein SELMODRAFT_83272 [Selaginella moellendorffii]
 gi|300167508|gb|EFJ34113.1| hypothetical protein SELMODRAFT_83272 [Selaginella moellendorffii]
          Length = 445

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 129/292 (44%), Gaps = 26/292 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI   C   RI  A   L  M +RGV PN VTYN +  G+ +   L  +      + 
Sbjct: 86  YNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFELMGVME 145

Query: 62  NAE-------------------------KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +A                          KV + M +R IEP++ + +++LH + +A +P+
Sbjct: 146 SAGFALTAVTFNPVVEFLCKSGKPDEACKVMETMLLRNIEPNILTLNLILHAFCKAARPE 205

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   + M E G CPT+ T++++++  C+  +++ A ELL  M R+   P+  TY+   
Sbjct: 206 EALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAELLETMARSKCKPNFVTYSIMV 265

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           +++        A     Q+   G   PN+   N  +        MD+       +   G 
Sbjct: 266 QKFAEMGRMVEARAFLEQLVVCGY-APNLLVCNAYVAGLCKTGEMDLASRFLTVMAEEGC 324

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             +  +Y  L+ G C+  +  EA +   EMI +G LP   T+  L +GL  +
Sbjct: 325 RANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSA 376



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/284 (20%), Positives = 124/284 (43%), Gaps = 14/284 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++  ++ G+ +   +D A+  L  M     +PN V+YN L++ +C              I
Sbjct: 53  LHNLMLKGFSEARLVDEAKSHLHRM---DCKPNSVSYNTLIDALCSSGR----------I 99

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A +    M  RG+ P+  +++ +     +A     + + +  M+  G   T  T++ V
Sbjct: 100 QEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFELMGVMESAGFALTAVTFNPV 159

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V+ LC  G+ ++A +++  M+   + P+  T N     +        A+ +   M E G 
Sbjct: 160 VEFLCKSGKPDEACKVMETMLLRNIEPNILTLNLILHAFCKAARPEEALGMTDIMVEMGF 219

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P + ++N L+ +F   ++MD   E+   +  S   P+  +Y++++    E  +  EA 
Sbjct: 220 C-PTIVTFNALLELFCNTDQMDSAAELLETMARSKCKPNFVTYSIMVQKFAEMGRMVEAR 278

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            +  +++  G  P  +       GL ++  +    R    + EE
Sbjct: 279 AFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLASRFLTVMAEE 322



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 108/278 (38%), Gaps = 51/278 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPN--VVTYNVLLNGVCRRASLHPSERFEKT 59
           Y +L++G C     D A+R + E  + G+ P   VV +N++L G                
Sbjct: 17  YGTLVHGHCLAGEFDEAKRLVAEFKDTGMSPGSLVVLHNLMLKG---------------- 60

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
                  F E R            +V    S  H+                 P   +Y++
Sbjct: 61  -------FSEAR------------LVDEAKSHLHRMDCK-------------PNSVSYNT 88

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LCS GRI++A E L  M + GV P+  TYN            + A +L   M+  G
Sbjct: 89  LIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFELMGVMESAG 148

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
             +  + ++N ++       + D   ++   +    + P++ +  +++H  C+  + +EA
Sbjct: 149 FALTAV-TFNPVVEFLCKSGKPDEACKVMETMLLRNIEPNILTLNLILHAFCKAARPEEA 207

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
                 M+E G  P  VTF  L      +D + +   L
Sbjct: 208 LGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAEL 245



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 14/138 (10%)

Query: 6   IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEK 65
           + G CK   +D+A RFL  M E G   N  TYN L+ G C+   +  +ER          
Sbjct: 300 VAGLCKTGEMDLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAER---------- 349

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQ---PQLSLDKLNFMKEKGICPTVATYSSVVK 122
           V +EM   G  PD T++S+++     A Q     + + ++    E    P  AT+  +++
Sbjct: 350 VLEEMIAEGSLPDSTTYSVLIQGLCSAGQIVHAFMVMLQVTRAVESAR-PDPATFVKLIE 408

Query: 123 CLCSCGRIEDAEELLGEM 140
            LC  G ++ A  +L  M
Sbjct: 409 KLCELGEMDRAALVLERM 426


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 139/292 (47%), Gaps = 30/292 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           Y  +I G+C   R   A+R L +MIER + P+V+T+N L++   +   L  +E+      
Sbjct: 334 YNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEML 393

Query: 56  ----FEKTIR---------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
               F  T+                +A+ +FD M      PDV +F+ ++ VY RA +  
Sbjct: 394 HRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRAKRVD 449

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
             +  L  +  +G+     TY++++   C    +  A++L  EM+ +GVCP   T N   
Sbjct: 450 EGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILL 509

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +   +    A++L+  ++   + +  + +YNI+I      +++D   +++  +   G+
Sbjct: 510 YGFCENEKLEEALELFEVIQMSKIDLDTV-AYNIIIHGMCKGSKVDEAWDLFCSLPIHGV 568

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            PD+ +Y ++I G C K    +A   F +M + G  P   T+ TL RG +++
Sbjct: 569 EPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKA 620



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 135/290 (46%), Gaps = 30/290 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF---- 56
           +Y+++I   CK      A+    EM+E+G+ PNV TYN +++G C       ++R     
Sbjct: 298 IYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM 357

Query: 57  ---------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                E  +  AEK+ DEM  R I PD  +++ +++ + + ++ 
Sbjct: 358 IEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNR- 416

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
               D    M +    P V T+++++   C   R+++  +LL E+ R G+  +  TYN  
Sbjct: 417 ---FDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTL 473

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +    + N A  L+++M   G+C P+  + NIL+  F    +++   E++  ++ S 
Sbjct: 474 IHGFCEVDNLNAAQDLFQEMISHGVC-PDTITCNILLYGFCENEKLEEALELFEVIQMSK 532

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +  D  +Y ++IHG+C+  K  EA   F  +   G+ P   T+  +  G 
Sbjct: 533 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGF 582



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 142/329 (43%), Gaps = 63/329 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLG---------------EMIERGVEPNVVTYNVLLNGVCR 46
           + +L++G C  +RI  A    G               +M+E G+ P V+T+N L+NG+C 
Sbjct: 179 FNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLC- 237

Query: 47  RASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMK 106
                     E  +  A  + ++M  +G+  DV ++  +++   +    + +L+ L+ M+
Sbjct: 238 ---------LEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKME 288

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
           E  I P V  YS+++  LC  G   DA+ L  EM+  G+ P+  TYNC    +      +
Sbjct: 289 ETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWS 348

Query: 167 GAMKLYRQMKE--------------------------DGLC--------VPNMHSYNILI 192
            A +L R M E                          + LC         P+  +YN +I
Sbjct: 349 DAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMI 408

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
             F   NR D  + ++ D+  S   PD+ ++  +I   C  ++  E  Q   E+  +GL+
Sbjct: 409 YGFCKHNRFDDAKHMF-DLMAS---PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLV 464

Query: 253 PQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
               T+ TL  G  + D L   + L +++
Sbjct: 465 ANTTTYNTLIHGFCEVDNLNAAQDLFQEM 493



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 126/300 (42%), Gaps = 40/300 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G C   R+  A   + +M+ +G+  +VVTY  ++NG+C+              +
Sbjct: 229 FNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD----------TK 278

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  +M    I+PDV  +S ++    +      +    + M EKGI P V TY+ ++
Sbjct: 279 SALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMI 338

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
              CS GR  DA+ LL +M+   + P   T+N              A KL  +M      
Sbjct: 339 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 398

Query: 178 --------------------------DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
                                     D +  P++ ++N +I ++    R+D   ++  ++
Sbjct: 399 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 458

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              GL  +  +Y  LIHG CE      A   F EMI  G+ P  +T   L  G  +++ L
Sbjct: 459 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 518



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 126/273 (46%), Gaps = 6/273 (2%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           +  LI  +C  +++  +    G++ + G +P+VVT+N LL+G+C    +  +        
Sbjct: 144 FNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMV 203

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           E     A  +FD+M   G+ P V +F+ +++      +   +   +N M  KG+   V T
Sbjct: 204 ETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVT 263

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y ++V  +C  G  + A  LL +M    + P    Y+            + A  L+ +M 
Sbjct: 264 YGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEML 323

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           E G+  PN+ +YN +I  F +  R    + +  D+    + PD+ ++  LI    ++ K 
Sbjct: 324 EKGI-APNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKL 382

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            EA +   EM+ + + P  VT+ ++  G  + +
Sbjct: 383 FEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHN 415



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 92/179 (51%), Gaps = 10/179 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G+C+++ ++ A+    EMI  GV P+ +T N+LL G C       +E+ E+ + 
Sbjct: 470 YNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCE------NEKLEEAL- 522

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++F+ +++  I+ D  +++I++H   +  +   + D    +   G+ P V TY+ ++
Sbjct: 523 ---ELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMI 579

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              C    I DA  L  +M  NG  P   TYN   +      + + +++L  +M+ +G 
Sbjct: 580 SGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGF 638



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 123/284 (43%), Gaps = 26/284 (9%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           + ++NR D+A     +M  R +  N+ ++N+L+   C    L  S             F 
Sbjct: 116 FVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFS----------LSTFG 165

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK---------------GICPT 113
           ++   G +PDV +F+ +LH      +   +L    +M E                G+ P 
Sbjct: 166 KLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPV 225

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           V T+++++  LC  GR+ +A  L+ +MV  G+     TY           D   A+ L  
Sbjct: 226 VITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLS 285

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           +M+E  +  P++  Y+ +I            + +++++   G+ P++ +Y  +I G C  
Sbjct: 286 KMEETHI-KPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSF 344

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            +W +A +   +MIE+ + P  +TF  L    ++   L    +L
Sbjct: 345 GRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKL 388



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  ++ +M +R I  ++ SF+I++  +   H+   SL     + + G  P V T+++++ 
Sbjct: 125 AISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLH 184

Query: 123 CLCSCGRIEDAEELLG---------------EMVRNGVCPSAETYNCFFKEYRGRKDANG 167
            LC   RI +A  L G               +MV  G+ P   T+N              
Sbjct: 185 GLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLE 244

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           A  L  +M   GL + ++ +Y  ++     +        + + ++ + + PD+  Y+ +I
Sbjct: 245 AAALVNKMVGKGLHI-DVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAII 303

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRR-LKKKLD 282
             LC+     +A   F EM+EKG+ P   T+  +  G       SD  R  R  ++++++
Sbjct: 304 DRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREIN 363

Query: 283 EESITFGS 290
            + +TF +
Sbjct: 364 PDVLTFNA 371



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 112/266 (42%), Gaps = 27/266 (10%)

Query: 23  GEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSF 82
           G + E+G +       V   G      L     + K++ +A   FD M VR   P  T+ 
Sbjct: 52  GRVAEKGTKSLPSLTQVTFEG--EELKLKSGSHYFKSLDDAIDFFDYM-VRS-RPFYTAV 107

Query: 83  SI--VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
               V+ V+ R ++P +++     M+ + I   + +++ ++KC C C ++  +    G++
Sbjct: 108 DCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKL 167

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
            + G  P   T+N            + A+ L+  M E G                 A+  
Sbjct: 168 TKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGF--------------LEAVAL 213

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
            D + EI       GL P + ++  LI+GLC + +  EA     +M+ KGL    VT+ T
Sbjct: 214 FDQMVEI-------GLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGT 266

Query: 261 LYRGLIQSDMLRTWRRLKKKLDEESI 286
           +  G+ +    ++   L  K++E  I
Sbjct: 267 IVNGMCKMGDTKSALNLLSKMEETHI 292


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 133/267 (49%), Gaps = 11/267 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L++ + K+ + D  +RF  +MI  G +P V TYN++++ +C+          E  +  A 
Sbjct: 66  LLHKFAKLGKTDGVKRFFKDMIGAGAKPTVFTYNIMIDCMCK----------EGDVEAAR 115

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +F+EM+ RG+ PD  +++ ++  + +  +   ++     MK+    P V TY++++ C 
Sbjct: 116 GLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCF 175

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G++    E   EM RNG+ P+  +Y+     +        A+K Y  M+  GL VPN
Sbjct: 176 CKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL-VPN 234

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
            ++Y  LI  +  +  +     + N++   G+  ++ +YT LI GLC  +   E      
Sbjct: 235 EYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLD 294

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDML 271
           EM+E  +    VTF  L  GL ++ ++
Sbjct: 295 EMVELDIKVTVVTFCVLIDGLCKNKLV 321



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 134/320 (41%), Gaps = 45/320 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G+ K+ R+D    F  EM +   EP+V+TYN L+N  C+   L     F     
Sbjct: 133 YNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEF----- 187

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                F EM+  G++P+V S+S ++  + +    Q ++     M+  G+ P   TY+S++
Sbjct: 188 -----FREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLI 242

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
              C  G + DA  L  EM++ GV  +  TY        G ++    + L  +M E    
Sbjct: 243 DAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIK 302

Query: 178 ----------DGLC---------------------VPNMHSYNILIGMFMALNRMDMVRE 206
                     DGLC                       N   Y  +I      N+++    
Sbjct: 303 VTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATT 362

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++  +   GL PD  +YT L+ G  ++    EA     +M+E G+    + + +L  GL 
Sbjct: 363 LFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYTSLVWGLS 422

Query: 267 QSDMLRTWRRLKKKLDEESI 286
             + L+  R   +++  E I
Sbjct: 423 HCNQLQKARSFLEEMIGEGI 442



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 136/314 (43%), Gaps = 33/314 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I   CK   ++ A     EM  RG+ P+ VTYN +++G  +   L  +  F + ++
Sbjct: 98  YNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMK 157

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +                           + F EM+  G++P+V S+S ++  + +    Q
Sbjct: 158 DMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQ 217

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++     M+  G+ P   TY+S++   C  G + DA  L  EM++ GV  +  TY    
Sbjct: 218 QAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALI 277

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF----MALNRMDMVREIWNDVK 212
               G ++    + L  +M E  + V  + ++ +LI       +    +D    I ND  
Sbjct: 278 DGLCGWENPTEGLHLLDEMVELDIKV-TVVTFCVLIDGLCKNKLVSKAIDYFGRISNDF- 335

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
             GL  +   YT +I GLC+  + + A   F +M +KGL+P +  + +L  G  +   + 
Sbjct: 336 --GLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVL 393

Query: 273 TWRRLKKKLDEESI 286
               L+ K+ E  +
Sbjct: 394 EALALRDKMVETGM 407



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 127/282 (45%), Gaps = 29/282 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC---------------R 46
           Y +LI  +CK  ++     F  EM   G++PNVV+Y+ L++  C               R
Sbjct: 168 YNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMR 227

Query: 47  RASLHPSERFEKTI----------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           R  L P+E    ++           +A ++ +EM   G+E +V +++ ++        P 
Sbjct: 228 RVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPT 287

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN-GVCPSAETYNCF 155
             L  L+ M E  I  TV T+  ++  LC    +  A +  G +  + G+  +A  Y   
Sbjct: 288 EGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAM 347

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGS 214
                       A  L+ QM + GL VP+  +Y  L+ G F   N ++ +  + + +  +
Sbjct: 348 IDGLCKGNQVEAATTLFEQMAQKGL-VPDRTAYTSLMDGNFKQGNVLEAL-ALRDKMVET 405

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
           G+  DL +YT L+ GL    + ++A  +  EMI +G+ P +V
Sbjct: 406 GMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEV 447



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 1/168 (0%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           MK   + P   + + ++      G+ +  +    +M+  G  P+  TYN          D
Sbjct: 51  MKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGD 110

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
              A  L+ +MK  GL +P+  +YN +I  F  + R+D     + ++K     PD+ +Y 
Sbjct: 111 VEAARGLFEEMKFRGL-IPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYN 169

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
            LI+  C+  K  +  ++F EM   GL P  V++ TL     +  M++
Sbjct: 170 ALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQ 217



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 1/125 (0%)

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
            RN   P    ++  F           A++ + +MK   +  P   S N L+  F  L +
Sbjct: 17  TRNVCVPGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRV-FPKTRSCNGLLHKFAKLGK 75

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
            D V+  + D+ G+G  P + +Y ++I  +C++   + A   F EM  +GL+P  VT+ +
Sbjct: 76  TDGVKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNS 135

Query: 261 LYRGL 265
           +  G 
Sbjct: 136 MIDGF 140



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 73/148 (49%), Gaps = 10/148 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT++I G CK N+++ A     +M ++G+ P+   Y  L++G  ++ +          +
Sbjct: 343 IYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGN----------V 392

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + D+M   G++ D+ +++ ++   S  +Q Q +   L  M  +GI P      SV
Sbjct: 393 LEALALRDKMVETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISV 452

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPS 148
           +K     G I +A EL   ++++ +  S
Sbjct: 453 LKKHYELGCINEAVELQSYLMKHQLLTS 480


>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 831

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 124/266 (46%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I G+ KI  + MA   + +M   G  P+  TYNV+++G+ +   +           
Sbjct: 478 YTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMD---------- 527

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + DEM V G+ P+  S++ ++  Y+      L+    N +KE G+ P V  Y+S++
Sbjct: 528 RAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLL 587

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C  GR++    +  EM   GV  +   YN     +  R D   A  + ++M+ +GL 
Sbjct: 588 KACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHEGL- 646

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++HSY   I        M    E    +K  G+ P+L +YT LIHG       ++A  
Sbjct: 647 TPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLIHGWASASYPEKALI 706

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
            + EM   G++P K  +  +   L+ 
Sbjct: 707 CYDEMKSAGMIPDKPLYHCIMTSLLS 732



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 129/269 (47%), Gaps = 18/269 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV--CRRASLHPSERFEK 58
           +Y ++I+ +CK   ++ AE  +  M E+G+E  +  YN+L++G   CR            
Sbjct: 299 IYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCR------------ 346

Query: 59  TIRNAEKVFDEMRVR---GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA 115
            +     VF  ++ R   G+ P V S+  ++++YS+  +   +L   N M+++GI     
Sbjct: 347 AVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRK 406

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           TYS ++      G   +A  +  +M   G+ P   TYN     +      N A++L  +M
Sbjct: 407 TYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARM 466

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            E G C P + +Y I+I  FM +  + M  E   D+K +G  P   +Y +++HGL +  +
Sbjct: 467 -ESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQ 525

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRG 264
              A     EM+  G+ P + ++ TL  G
Sbjct: 526 MDRAASIIDEMVVAGVHPNERSYTTLIEG 554



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 129/286 (45%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI  + K+ ++D A +   EM ++G++ N  TY+++++G  +               
Sbjct: 373 YGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGD----------TA 422

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA  VF++M   GI+PD  +++I+++ + +  Q   +L+ L  M+     PT+ TY+ ++
Sbjct: 423 NAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIII 482

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G +  A E + +M   G  PSA TYN            + A  +  +M   G+ 
Sbjct: 483 DGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVH 542

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  SY  LI  +  +  M +  + +N +K  GL PD+ +Y  L+   C+  + +    
Sbjct: 543 -PNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQSTLA 601

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              EM   G+      +  L  G  Q   +     + +K+  E +T
Sbjct: 602 ITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHEGLT 647



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 128/297 (43%), Gaps = 44/297 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I G+ ++     A     +M   G++P+ +TYN+L+N  C+   ++          
Sbjct: 408 YSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMN---------- 457

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++   M      P + +++I++  + +    +++ + +  MK  G  P+ ATY+ ++
Sbjct: 458 RALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIM 517

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
             L   G+++ A  ++ EMV  GV P+  +Y    + Y    D   A K + ++KE GL 
Sbjct: 518 HGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLK 577

Query: 181 --------------------------------CVP-NMHSYNILIGMFMALNRMDMVREI 207
                                            VP N + YNIL+  +     M    +I
Sbjct: 578 PDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDI 637

Query: 208 WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
              ++  GL PD+ SYT  I+  C+     +A +   +M ++G+ P    + TL  G
Sbjct: 638 MQKMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLIHG 694



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 120/280 (42%), Gaps = 49/280 (17%)

Query: 20  RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDV 79
           R + +  +R  +P    + +L+N   +R   H          +A   F+ MR  GIEP+V
Sbjct: 178 RKVVDAFKRIKKPKQRDHTLLVNYYGKRGDKH----------SARAAFESMRAAGIEPNV 227

Query: 80  TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS--------------------- 118
            S++ ++H Y+ A   + ++  +  M+ +G+ P  ATYS                     
Sbjct: 228 HSYTNLIHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQR 287

Query: 119 --------------SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
                         +++   C  G +E AE ++  M   G+  +   YN     Y   + 
Sbjct: 288 ALSENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRA 347

Query: 165 ANGAMKLYRQMK---EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
            +  + ++R++K   E GL  P + SY  LI ++  L +MD   +I N+++  G+  +  
Sbjct: 348 VDKCLNVFRRLKARTETGLS-PTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRK 406

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +Y+M+I G  +      A   F +M   G+ P  +T+  L
Sbjct: 407 TYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNIL 446



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 16/187 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+   CK  R+        EM   GV  N   YN+LL+G  +R  +           
Sbjct: 583 YASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMW---------- 632

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  +MR  G+ PD+ S++  ++   +A     + + +  MK++G+ P +  Y++++
Sbjct: 633 EASDIMQKMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLI 692

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA------NGAMKLYRQM 175
               S    E A     EM   G+ P    Y+C       R         +G +++  +M
Sbjct: 693 HGWASASYPEKALICYDEMKSAGMIPDKPLYHCIMTSLLSRAAVARETVFDGVLRVTSEM 752

Query: 176 KEDGLCV 182
            + G+CV
Sbjct: 753 VDQGICV 759



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 70/152 (46%), Gaps = 16/152 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L+ GW +   +  A   + +M   G+ P++ +Y   +N  C+   +          
Sbjct: 617 IYNILLDGWAQRGDMWEASDIMQKMRHEGLTPDIHSYTSFINACCKAGDM---------- 666

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A +  ++M+ +G++P++ +++ ++H ++ A  P+ +L   + MK  G+ P    Y  +
Sbjct: 667 LKATETIEQMKQQGVQPNLQAYTTLIHGWASASYPEKALICYDEMKSAGMIPDKPLYHCI 726

Query: 121 VKCLCSCGRI------EDAEELLGEMVRNGVC 146
           +  L S   +      +    +  EMV  G+C
Sbjct: 727 MTSLLSRAAVARETVFDGVLRVTSEMVDQGIC 758


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 137/286 (47%), Gaps = 11/286 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y++LI G+ +    D A + + EM   GV+PN +TY+ L+ G+C+   +          
Sbjct: 350 VYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMG--------- 400

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++  +M   G   D  ++++V+  + R H  + +   LN M++ GI P V TYS +
Sbjct: 401 -RASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSII 459

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G  E A  LL +M+ +G+ P+A  Y      Y      + A +  ++M  + L
Sbjct: 460 INGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENL 519

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+++ YN LI     + +MD   E ++++   G  P+  +Y  LIHG       ++A 
Sbjct: 520 -TPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAE 578

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           Q   +M+  GL P    +  +  G  +SD L       K + E+ +
Sbjct: 579 QLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGL 624



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 133/289 (46%), Gaps = 26/289 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI  +CK+  ++ A++ + EM E G   NVVTYN L+ G+CR  ++  +  ++K + 
Sbjct: 246 YSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEME 305

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +                         A+ + DEM   G+ P+V  +S ++  + R     
Sbjct: 306 DYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNAD 365

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   +  M   G+ P   TY ++++ LC  GR+  A  +L +M + G      TYN   
Sbjct: 366 EAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVI 425

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           + +  + +   A  L  +M++ G+  PN+++Y+I+I     +   +    +   +   GL
Sbjct: 426 EGHLRQHNKEEAFLLLNEMRKGGIS-PNVYTYSIIINGLCQIGESERASGLLEQMIADGL 484

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            P+   Y  LI G C +  +  AC+   +M  + L P    + +L  GL
Sbjct: 485 KPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGL 533



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 144/345 (41%), Gaps = 60/345 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G   + ++D A  +  EM+E+G +PN  TY  L++G     +L  +E+    + 
Sbjct: 526 YNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQML 585

Query: 62  NA----------------------EKV---FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           N+                      EKV      M  +G+ PD   + IV+H  S +   Q
Sbjct: 586 NSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQ 645

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++  L+ +++ G+ P    Y S++   C    +E A  LL EM + G+ P    YN   
Sbjct: 646 AAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALI 705

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +    D + A  ++  +   GL  PN  +Y  LI  +     +    +++N++   G+
Sbjct: 706 DGFCKSDDISHARNIFNSIICKGL-PPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGV 764

Query: 217 GPD----------------------------------LDSYTMLIHGLCEKQKWKEACQY 242
            PD                                  + S+  L+HG C++ K +E  ++
Sbjct: 765 APDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIISSFNTLVHGFCKRGKLQETVKF 824

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
              M++K ++P  +T E +  GL ++  L     +  +L +++ +
Sbjct: 825 LHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVELQQKNAS 869



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 123/276 (44%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I G C+I   + A   L +MI  G++PN   Y  L++G CR          E +  
Sbjct: 456 YSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCR----------EGSFS 505

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +   +M    + PD+  ++ ++   S   +   +++  + M EKG  P   TY  ++
Sbjct: 506 LACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLI 565

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G +E AE+LL +M+ +G+ P+   Y    + Y    +        + M E GL 
Sbjct: 566 HGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGL- 624

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+   Y I+I    +   M     + + ++ +GL PD   Y  LI G C+    ++A  
Sbjct: 625 MPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVG 684

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
              EM +KG+ P    +  L  G  +SD +   R +
Sbjct: 685 LLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNI 720



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 11/245 (4%)

Query: 23  GEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSF 82
           G M   G+ P+V TY+ L+   C+           + + +A+KV +EMR  G   +V ++
Sbjct: 232 GFMEGAGISPDVYTYSTLIEAYCKV----------RDLESAKKVVEEMRETGCSLNVVTY 281

Query: 83  SIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR 142
           + ++    RA   + +      M++ G+ P   TY +++  LC  GR + A+ LL EM  
Sbjct: 282 NTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSC 341

Query: 143 NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202
            G+ P+   Y+     +  + +A+ A K+ ++M   G+  PN  +Y+ LI     L RM 
Sbjct: 342 AGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGV-QPNKITYDNLIRGLCKLGRMG 400

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
               I   +   G   D  +Y ++I G   +   +EA     EM + G+ P   T+  + 
Sbjct: 401 RASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIII 460

Query: 263 RGLIQ 267
            GL Q
Sbjct: 461 NGLCQ 465



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 109/229 (47%), Gaps = 4/229 (1%)

Query: 54  ERFEKT--IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC 111
           + ++KT  +R+  +V   M+  G+ P +   + +L    RA    L      FM+  GI 
Sbjct: 181 DTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGFMEGAGIS 240

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P V TYS++++  C    +E A++++ EM   G   +  TYN              A   
Sbjct: 241 PDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGY 300

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
            ++M++ GL VP+  +Y  +I       R D  + + +++  +GL P++  Y+ LI G  
Sbjct: 301 KKEMEDYGL-VPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFM 359

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ-SDMLRTWRRLKK 279
            +    EA +   EM   G+ P K+T++ L RGL +   M R  R LK+
Sbjct: 360 RQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQ 408



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 93/189 (49%), Gaps = 7/189 (3%)

Query: 82  FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141
             +++  Y +  + +   + +  MK+ G+ P++   + ++K L     ++   ++ G M 
Sbjct: 176 LDVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGFME 235

Query: 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
             G+ P   TY+   + Y   +D   A K+  +M+E G C  N+ +YN LIG    L R 
Sbjct: 236 GAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETG-CSLNVVTYNTLIG---GLCRA 291

Query: 202 DMVREIWN---DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258
             + E +    +++  GL PD  +Y  +I+GLC++ +  +A     EM   GL+P  V +
Sbjct: 292 GAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVY 351

Query: 259 ETLYRGLIQ 267
            TL  G ++
Sbjct: 352 STLIDGFMR 360



 Score = 45.4 bits (106), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 97/227 (42%), Gaps = 34/227 (14%)

Query: 94  QPQLSLDKLNFMKEK--GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS--- 148
            P+L LD   + + +     P    ++ +   LC+ G    A  LL +M+R    P    
Sbjct: 98  HPKLLLDFFYWSRTRLAPSAPAPDAFAHLAVSLCAAGLYPQANGLLDQMIRAYPTPPLVL 157

Query: 149 AETYNCFFKEYRGRKDA----------------NGAMKLYRQMKEDGLCVPNMHSYNILI 192
           +  +       +GR+                  +GA ++   MK+ GL  P++   N L+
Sbjct: 158 SSVHRALSGSDQGRRPVVLDVLVDTYKKTGRVRDGA-EVVLLMKDLGL-APSLRCCNGLL 215

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
              +  + +D++ ++   ++G+G+ PD+ +Y+ LI   C+ +  + A +   EM E G  
Sbjct: 216 KDLLRADALDLLWKVRGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCS 275

Query: 253 PQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
              VT+ TL  GL ++  +           EE+  +  E ++Y   P
Sbjct: 276 LNVVTYNTLIGGLCRAGAI-----------EEAFGYKKEMEDYGLVP 311


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 131/265 (49%), Gaps = 12/265 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++T+LI  + +  R+D A   L EM    +EP+VV YNV ++   +   +  + +F    
Sbjct: 237 LFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKF---- 292

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                 F EM+  G+  D  +++ ++ V  +A +   +++    M +    P    Y+++
Sbjct: 293 ------FHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTM 346

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +      G+ EDA  LL    R G  PS  +YNC       +   + A+K + +MK+D  
Sbjct: 347 IMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDA- 405

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +PN+ +YNI+I M     +++    + + +K +GL P++ +  +++  LC+ Q+  +AC
Sbjct: 406 -IPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDAC 464

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
             F  +  K   P  VT+ +L  GL
Sbjct: 465 SIFEGLDHKTCRPDAVTYCSLIEGL 489



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 126/276 (45%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI+G  K      A      M E+G   +   YN +++G C+             + 
Sbjct: 587 YTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGK----------VN 636

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ +EM+ +G EP V ++  V+   ++  +   +       K KGI   V  YSS++
Sbjct: 637 KAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLI 696

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 GRI++A  ++ E+++ G+ P+  T+NC        ++ + A+  ++ MK D  C
Sbjct: 697 DGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMK-DLKC 755

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +Y+ILI     + + +     W +++  G  P++ +YT +I GL +     EA  
Sbjct: 756 TPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADT 815

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F +  EKG +     +  +  GL  ++      RL
Sbjct: 816 LFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRL 851



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 138/329 (41%), Gaps = 46/329 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTSLI  + K  R +   +   EM+  G  P+++  N  ++ V +             I
Sbjct: 516 VYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGE----------I 565

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                +F E++  G  PD  S++I++H   +A     + +    MKE+G       Y++V
Sbjct: 566 EKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTV 625

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G++  A +LL EM   G  P+  TY             + A  L+ + K  G+
Sbjct: 626 IDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGI 685

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD-------LD------------ 221
            + N+  Y+ LI  F  + R+D    I  ++   GL P+       LD            
Sbjct: 686 EL-NVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEAL 744

Query: 222 ----------------SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
                           +Y++LIHGLC+ +K+ +A  ++ EM ++G  P   T+ T+  GL
Sbjct: 745 VCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGL 804

Query: 266 IQSDMLRTWRRLKKKLDEESITFGSEFQN 294
            ++  +     L +K  E+     S   N
Sbjct: 805 AKAGNIVEADTLFEKFKEKGGVADSAIYN 833



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 145/329 (44%), Gaps = 52/329 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+    + + A   L     +G  P+VV+YN +L+ + R+            + 
Sbjct: 343 YNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQ----------VD 392

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K F+EM+   I P++++++I++ +  +A + + +L   + MK+ G+ P V T + +V
Sbjct: 393 EALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMV 451

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD-ANGAMKLYRQM----- 175
             LC   R++DA  +   +      P A TY C   E  GR    + A KLY QM     
Sbjct: 452 DRLCKAQRLDDACSIFEGLDHKTCRPDAVTY-CSLIEGLGRHGRVDEAYKLYEQMLDANQ 510

Query: 176 -------------------KEDGL----------CVPNMHSYNILIGMFMALNRMDMVRE 206
                              KEDG           C P++   N  +        ++  R 
Sbjct: 511 IPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRA 570

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++ ++K  G  PD  SYT+LIHGL +     EA + F  M E+G +     + T+  G  
Sbjct: 571 LFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFC 630

Query: 267 QSDMLRTWRRLKKKLDEES-----ITFGS 290
           +S  +    +L +++  +      +T+GS
Sbjct: 631 KSGKVNKAYQLLEEMKTKGHEPTVVTYGS 659



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 13/177 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+SLI G+ K+ RID A   + E++++G+ PNV T+N LL+ + +           + I
Sbjct: 691 IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVK----------AEEI 740

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A   F  M+     P+  ++SI++H   +  +   +      M+++G  P V TY+++
Sbjct: 741 SEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTM 800

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           +  L   G I +A+ L  +    G    +  YN   +   G  +AN A   YR  +E
Sbjct: 801 ISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIE---GLSNANRASDAYRLFEE 854



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 128/306 (41%), Gaps = 27/306 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKT 59
           +Y   I  + K  ++DMA +F  EM   G+  + VTY  ++  +C+   L+ + E FE  
Sbjct: 272 LYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHM 331

Query: 60  IRN------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
            +N                        A  + +  R +G  P V S++ +L    R  Q 
Sbjct: 332 DQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQV 391

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +L K   MK+  I P ++TY+ ++  LC  G++E A  +   M   G+ P+  T N  
Sbjct: 392 DEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIM 450

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                  +  + A  ++  + +   C P+  +Y  LI       R+D   +++  +  + 
Sbjct: 451 VDRLCKAQRLDDACSIFEGL-DHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDAN 509

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
             P+   YT LI    +  + ++  + + EM+  G  P  +   T    + ++  +   R
Sbjct: 510 QIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGR 569

Query: 276 RLKKKL 281
            L +++
Sbjct: 570 ALFQEI 575



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 108/260 (41%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+    +  + +  E+ L EM   G  P+        N  C    L   +   + +R
Sbjct: 133 YNSLLMVMARTRKFNCLEQILEEMSIAGFGPS--------NNTCIEIVLSFIK--SRKLR 182

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A      MR     P  ++++ ++   S +      L     M+E G    V  +++++
Sbjct: 183 EAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLI 242

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +     GR++ A  LL EM  N + P    YN     +      + A K + +MK +GL 
Sbjct: 243 RVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLV 302

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++ +Y  +IG+    +R++   E++  +  +   P   +Y  +I G     K+++A  
Sbjct: 303 LDDV-TYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYS 361

Query: 242 YFVEMIEKGLLPQKVTFETL 261
                  KG +P  V++  +
Sbjct: 362 LLERQRRKGCIPSVVSYNCI 381



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 9/244 (3%)

Query: 40  LLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
           L+ GV RR  L          R AE++ D    R       +++ +L V +R  +     
Sbjct: 99  LVIGVLRR--LKDVNNAVNYFRWAERLTDRAHCR------EAYNSLLMVMARTRKFNCLE 150

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
             L  M   G  P+  T   +V       ++ +A   +  M +    P+   Y       
Sbjct: 151 QILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGAL 210

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
              +D++  + L++QM+E G  V N+H +  LI +F    R+D    + +++K + L PD
Sbjct: 211 STSRDSDCMLTLFQQMQELGYAV-NVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPD 269

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
           +  Y + I    +  K   A ++F EM   GL+   VT+ ++   L ++D L     L +
Sbjct: 270 VVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFE 329

Query: 280 KLDE 283
            +D+
Sbjct: 330 HMDQ 333


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 127/268 (47%), Gaps = 14/268 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--RASLHPSERFEKT 59
           Y+S+I G C + R+  A +   +M + G +PN   YN L++G C+  R S          
Sbjct: 442 YSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTS---------- 491

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
             +A +++ +M   G  P V +++ ++    +A + Q +      M E G  P + TY S
Sbjct: 492 --DAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGS 549

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +++ L S  +I+DA  +  +++  G+      +N            + A+ ++  MKE  
Sbjct: 550 LIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKK 609

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C PN+ +YN L+        +D    +W  +   GL PD+ SY   I GLC   +  E 
Sbjct: 610 NCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEG 669

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            Q   E++ +G++P  +T+  L R +I+
Sbjct: 670 IQLLDEVLSRGIIPTVITWNILVRAVIK 697



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 118/248 (47%), Gaps = 7/248 (2%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G  P + ++N LL+   R      ++ F  ++ +    F     R I P++ +++IVL  
Sbjct: 114 GCNPGIRSHNALLDAFVRARRFSDADAFFASLSHG--AFG----RRIAPNLQTYNIVLRS 167

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
                    ++   + ++ + + P   TYS+++  L    R++ A +LL EM R+GV P 
Sbjct: 168 LCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPD 227

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
              YN          +    M+++ ++ +D    PN+ +YN+++       R   V E+W
Sbjct: 228 VVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVW 287

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             +  + L PD+ +Y +LIHGLC       A + + E+I+ GL+     + +L +G  Q+
Sbjct: 288 ERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQA 347

Query: 269 DMLR-TWR 275
             ++  W+
Sbjct: 348 GRVQEAWK 355



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 133/294 (45%), Gaps = 12/294 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++L+ G  K +R+D A   L EM   GV+P+VV YN LL G C +A       FEK +R
Sbjct: 196 YSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGG-CFKAG-----EFEKVMR 249

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             +K+  +    G  P++ +++++L    +  + +   +    M    + P V TY  ++
Sbjct: 250 VWDKLVKD---PGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILI 306

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G ++ A  +  E+++ G+   A  YN   K +        A K +      GL 
Sbjct: 307 HGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGL- 365

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDV-KGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             N+ +YNI+I        +D   E+W+ + K     PD  ++  LIHGLC+     +A 
Sbjct: 366 -RNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAF 424

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
             F E    G      ++ ++  GL     L    ++ +K+D++     S   N
Sbjct: 425 TIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYN 478



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 139/301 (46%), Gaps = 39/301 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEM----IERGVEPNVVTYNVLLNGVCRRASLHPSERFE 57
           + +L+  + +  R   A+ F   +      R + PN+ TYN++L  +C R  L  +    
Sbjct: 122 HNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLF 181

Query: 58  KTIR-------------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92
            ++R                         +A  + DEM   G++PDV  ++ +L    +A
Sbjct: 182 DSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKA 241

Query: 93  HQPQLSL---DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
            + +  +   DKL  +K+ G  P +ATY+ ++  LC  GR ++  E+   MV N + P  
Sbjct: 242 GEFEKVMRVWDKL--VKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDV 299

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
            TY           D +GA ++Y ++ + GL + +   YN L+  F    R+    + W+
Sbjct: 300 ITYGILIHGLCRSGDVDGAARVYSEIIKTGLVI-DAAMYNSLVKGFCQAGRVQEAWKFWD 358

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL--LPQKVTFETLYRGLIQ 267
               +GL  +L +Y ++I GL +     EA + + +++EK +  +P  VTF TL  GL Q
Sbjct: 359 SAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELW-DLLEKDVACIPDTVTFGTLIHGLCQ 416

Query: 268 S 268
           +
Sbjct: 417 N 417



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 46/158 (29%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           M+  LI+G C   ++D A     +M E+    PN+VTYN L++G+               
Sbjct: 581 MHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETG----------Y 630

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           I  A  ++  +   G+EPD+ S                                   Y++
Sbjct: 631 IDKAATLWTSITEDGLEPDIIS-----------------------------------YNT 655

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
            +K LCSC RI +  +LL E++  G+ P+  T+N   +
Sbjct: 656 RIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVR 693



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 82/201 (40%), Gaps = 37/201 (18%)

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKE-KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR 142
           +VL  +SRA  P  +LD    +    G  P + ++++++       R  DA+     +  
Sbjct: 88  VVLSAFSRAIMPDAALDAFRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASL-- 145

Query: 143 NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202
                   ++  F     GR+ A                 PN+ +YNI++    A   +D
Sbjct: 146 --------SHGAF-----GRRIA-----------------PNLQTYNIVLRSLCARGDLD 175

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
               +++ ++   + PD  +Y+ L+ GL ++ +   A     EM   G+ P  V +  L 
Sbjct: 176 RAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALL 235

Query: 263 RGLIQS----DMLRTWRRLKK 279
            G  ++     ++R W +L K
Sbjct: 236 GGCFKAGEFEKVMRVWDKLVK 256


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 144/323 (44%), Gaps = 41/323 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC---------------R 46
           Y +LI G C+  RID A    GEM +    P++  Y  L+ G+C               +
Sbjct: 226 YATLIEGLCEAGRIDEAVELFGEMDQ----PDMHMYAALVKGLCNAERGEEGLLMLRRMK 281

Query: 47  RASLHPSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                PS R           E+  + AE++  EM  +G+ P V + + V++ Y +  +  
Sbjct: 282 ELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMS 341

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L  L  MK +G  P V TY+++V+  C+ G++  A  LL +M   GV P A TYN   
Sbjct: 342 DALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLI 401

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           +          A +L R M+ DGL + + ++YN LI       R D    +++ ++  G+
Sbjct: 402 RGQCIDGHIESAFRLLRLMEGDGL-IADQYTYNALINALCKDGRTDQACSLFDSLETRGI 460

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  ++  LI+GLC+  K   A ++  +M+  G  P   T+ +    L           
Sbjct: 461 KPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLC---------- 510

Query: 277 LKKKLDEESITFGSEFQNYHFKP 299
            K K  +E ++F  E      KP
Sbjct: 511 -KMKGSQEGLSFIGEMLQKDVKP 532



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 140/300 (46%), Gaps = 23/300 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           + SLI G+C+ N++D+A     +M  RG   +VV+Y  L+ G+C                
Sbjct: 191 FNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMD 250

Query: 47  RASLHPSERFEKTIRNAEK------VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLD 100
           +  +H      K + NAE+      +   M+  G  P   +++ V+    R  + + + +
Sbjct: 251 QPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEE 310

Query: 101 KLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160
            L  M EKG+ P V T ++V+   C  GR+ DA  +L  M   G  P+  TYN   + + 
Sbjct: 311 MLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFC 370

Query: 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
                + AM L  +M+  G+  P+  +YN+LI        ++    +   ++G GL  D 
Sbjct: 371 NEGKVHKAMTLLNKMRACGVN-PDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQ 429

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR-TWRRLKK 279
            +Y  LI+ LC+  +  +AC  F  +  +G+ P  VTF +L  GL +S      W+ L+K
Sbjct: 430 YTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEK 489



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 117/262 (44%), Gaps = 11/262 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T++I  +CK  R+  A R L  M  RG +PNV TYN L+ G C    +H           
Sbjct: 328 TAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVH----------K 377

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A  + ++MR  G+ PD  ++++++         + +   L  M+  G+     TY++++ 
Sbjct: 378 AMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALIN 437

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  GR + A  L   +   G+ P+A T+N           A+ A K   +M   G C 
Sbjct: 438 ALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAG-CT 496

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+ ++Y+  I     +           ++    + P   +YT++IH L +++ +    + 
Sbjct: 497 PDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVART 556

Query: 243 FVEMIEKGLLPQKVTFETLYRG 264
           + EM+  G  P  VT+ T  R 
Sbjct: 557 WGEMVSSGCNPDVVTYTTSMRA 578



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 132/342 (38%), Gaps = 78/342 (22%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI   CK  R D A      +  RG++PN VT+N L+NG+C+      + +F + + 
Sbjct: 432 YNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMV 491

Query: 62  NAEKVFD-------------------------EMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +A    D                         EM  + ++P   +++IV+H   +     
Sbjct: 492 SAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYG 551

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           L       M   G  P V TY++ ++  C  GR+ +AE +L EM +NGV      YN   
Sbjct: 552 LVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLM 611

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI------------------------ 192
             +      + A+ + +QM      VPN  +Y IL+                        
Sbjct: 612 DGHASIGQTDHAVSILKQMTSVA-SVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAI 670

Query: 193 ------GMFMAL----------------------NRMDMVREIWNDVKGSGLGPDLDSYT 224
                 G+F  +                       R +    + + +K   +  + D YT
Sbjct: 671 ELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYT 730

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
            L+   C+ +++ +A      MI+ G +PQ ++++ L  GLI
Sbjct: 731 ALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLI 772



 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 122/291 (41%), Gaps = 26/291 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G+C   ++  A   L +M   GV P+ VTYN+L+ G C    +  + R  + + 
Sbjct: 362 YNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLME 421

Query: 62  -------------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     A  +FD +  RGI+P+  +F+ +++   ++ +  
Sbjct: 422 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKAD 481

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           ++   L  M   G  P   TYSS ++ LC     ++    +GEM++  V PS   Y    
Sbjct: 482 IAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVI 541

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
            +    ++     + + +M   G C P++ +Y   +  +    R++    +  ++  +G+
Sbjct: 542 HKLLKERNYGLVARTWGEMVSSG-CNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGV 600

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
             D  +Y  L+ G     +   A     +M     +P + T+  L R L++
Sbjct: 601 TVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVR 651



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 123/296 (41%), Gaps = 45/296 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGV-EPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           + SL+    +     +A R    M       P   TYN ++  +CRRA L  + R+    
Sbjct: 120 FASLLAHLSRFALAPLALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRADLARALRY---- 175

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                    M   G  PD  +F+ ++  Y R +Q  ++ D  + M  +G    V +Y+++
Sbjct: 176 ------LSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATL 229

Query: 121 VKCLCSCGRIEDAEELLGEM----------VRNGVC---------------------PSA 149
           ++ LC  GRI++A EL GEM          +  G+C                     PS 
Sbjct: 230 IEGLCEAGRIDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPST 289

Query: 150 ETYNCFFKEYRGR-KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
             Y     ++R R + A  A ++ ++M E GL  P + +   +I  +    RM     + 
Sbjct: 290 RAYAAVV-DFRCRERKAKEAEEMLQEMFEKGL-APCVVTCTAVINAYCKEGRMSDALRVL 347

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             +K  G  P++ +Y  L+ G C + K  +A     +M   G+ P  VT+  L RG
Sbjct: 348 ELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRG 403



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 100/240 (41%), Gaps = 8/240 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR------ASLHPSER 55
           Y +L+ G   I + D A   L +M      PN  TY +LL  + R         L P+  
Sbjct: 607 YNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGV 666

Query: 56  FEKT-IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV 114
           ++   + +   +FD M+     P+  ++S +L  +S   + + +   ++ MKE  I    
Sbjct: 667 WKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNE 726

Query: 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
             Y+++V C C   R  DA  L+  M+++G  P   +Y             + A +++  
Sbjct: 727 DIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMN 786

Query: 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
            +      P+   + ++I   +     D+ RE+   ++     P   +Y ML   L +++
Sbjct: 787 SRWKDYS-PDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTEELPDRE 845


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 138/277 (49%), Gaps = 13/277 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+ G+CKI +   A+  + E+++ G EPNV TY++++N  C+             + 
Sbjct: 211 YNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKL----------DKVE 260

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +VF +M      P+  +F+ ++  + +A   + ++     M++ G   T+ TY++++
Sbjct: 261 EAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLI 320

Query: 122 KCLCSC-GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             LC   G +  A +L  ++   G+ P+  TYN   + +   +  + AM+ + +M  +G 
Sbjct: 321 DSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEM--EGK 378

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C PN+ +Y+ILI     + RM    +   D+K  G  P + +Y  LI+G C+  + K A 
Sbjct: 379 CAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSAL 438

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            +F +M   G  P  V F TL  GL +++      RL
Sbjct: 439 LFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRL 475



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 136/286 (47%), Gaps = 18/286 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CK  ++  A     +M   G+ PN  T N LL G+C    +           
Sbjct: 35  YNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQM----------S 84

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+F EM+     P   S +I+L  +  A + + +L  L  M++        TY+ V+
Sbjct: 85  SALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVL 144

Query: 122 KCLC----SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           K LC    S  R+E A E   EM  +GV P  E+Y+              A  L+  M  
Sbjct: 145 KGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT- 203

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
              C P++ +YN+L+  +  + +    + +  ++  +G  P++ +Y+++I+  C+  K +
Sbjct: 204 ---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVE 260

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           EA + F++MIE   +P  VTF TL  G  ++ ML    +L  ++++
Sbjct: 261 EAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEK 306



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 145/294 (49%), Gaps = 37/294 (12%)

Query: 2   YTSLIYGWC----KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFE 57
           Y  ++ G C      NR++ A  F  EM   GVEP++ +Y++LL      ++L  S R  
Sbjct: 140 YNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILL------SALSDSGRMA 193

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
           +    A  +F  M      PD+ ++++++  Y +  Q   +   +  + + G  P V TY
Sbjct: 194 E----AHALFSAMTC---SPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTY 246

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           S ++ C C   ++E+A E+  +M+ +   P+A T+N     +        A+KL+ +M++
Sbjct: 247 SIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEK 306

Query: 178 DGLCVPNMHSYNILI--------GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
            G C   + +YN LI        G++ A+       +++N ++G+GL P + +Y  LI G
Sbjct: 307 IG-CKATIVTYNTLIDSLCKKRGGVYTAV-------DLFNKLEGAGLTPTIVTYNSLIQG 358

Query: 230 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
            C+ ++  EA QYF EM E    P  +T+  L  GL +   +R  +   K L++
Sbjct: 359 FCDARRLSEAMQYFDEM-EGKCAPNVITYSILIDGLCK---VRRMKEAAKTLED 408



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 126/276 (45%), Gaps = 14/276 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G+CK   ++ A +   EM + G +  +VTYN L++ +C++            + 
Sbjct: 281 FNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKK---------RGGVY 331

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F+++   G+ P + +++ ++  +  A +   ++   + M+ K   P V TYS ++
Sbjct: 332 TAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGK-CAPNVITYSILI 390

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   R+++A + L +M  +G  P+  TY      +    +   A+  + +MK  G C
Sbjct: 391 DGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAG-C 449

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN   +N LI       R +    +   +   G  PD+ +Y  LI GLC   + ++A +
Sbjct: 450 APNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQR 509

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F  M      P   TF  L RGL     +   R +
Sbjct: 510 LFDGM---ACAPNVTTFNFLIRGLCAQKKVEEARNI 542



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 1/105 (0%)

Query: 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
           A++L++++   GL  PN H+YN+LI  F    +M     +++D+K SGL P+  +   L+
Sbjct: 16  ALRLFKEVLA-GLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLL 74

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
            GLCE  +   A + F EM     LP   +   L RG   +  +R
Sbjct: 75  LGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVR 119



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 13/136 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CK   +  A  F  +M   G  PN V +N L++G+C+      +ER    +R
Sbjct: 421 YGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCK------AERANDGLR 474

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +   M   G +PDV +++ ++     A++ +   D           P V T++ ++
Sbjct: 475 ----LLCHMHAEGCKPDVITYNCLISGLCSANRVE---DAQRLFDGMACAPNVTTFNFLI 527

Query: 122 KCLCSCGRIEDAEELL 137
           + LC+  ++E+A  +L
Sbjct: 528 RGLCAQKKVEEARNIL 543



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 13/86 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ +LI G CK  R +   R L  M   G +P+V+TYN L++G+C              +
Sbjct: 455 IFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCS----------ANRV 504

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVL 86
            +A+++FD M      P+VT+F+ ++
Sbjct: 505 EDAQRLFDGM---ACAPNVTTFNFLI 527



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N L+   ++  + D    ++ +V      P+  +Y +LI G C+  +  +A   F +M  
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 249 KGLLPQKVTFETLYRGLIQ----SDMLRTWRRLK 278
            GLLP   T  TL  GL +    S  L+ +R ++
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQ 94



 Score = 44.3 bits (103), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 34/182 (18%), Positives = 77/182 (42%), Gaps = 8/182 (4%)

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           ++++  L S  + + A  L  E++     P+A TYN   + +      + A+ ++  MK 
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            GL +PN  + N L+     + +M    +++ +++     P   S+ +L+ G     + +
Sbjct: 61  SGL-LPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVR 119

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
           +A  +  +M +        T+  + +GL        W        E+++ F  E +    
Sbjct: 120 DALAHLQDMRKSSSSVATGTYNLVLKGL-------CWENKSANRLEQAMEFFKEMKASGV 172

Query: 298 KP 299
           +P
Sbjct: 173 EP 174


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 139/293 (47%), Gaps = 11/293 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI G C   RI  A   L EM E+G+EP V TY V ++ +C              + 
Sbjct: 270 YSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGR----------VD 319

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +   M  +G  P V +++ ++    RA + +L++   + M ++G+ P   TY++++
Sbjct: 320 DAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALI 379

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+ GR   A ++   M  +G   +A+TYN   K   G  D   AM ++ +M +DG  
Sbjct: 380 NELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPS 439

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +YN LI   +    ++        +K S   PD  +Y  LI G C+  K   A  
Sbjct: 440 -PTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATS 498

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           +F EM++ G+ P + T+  +  G  +   +     L ++++E   +   E  N
Sbjct: 499 FFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYN 551



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 134/285 (47%), Gaps = 26/285 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-------- 53
           + +L+    K + +  A+    ++   GV+P+++T+N ++N +C++  +  +        
Sbjct: 165 FNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIF 224

Query: 54  ------ERFEKT-----------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                 + F  T           +  A +VFD M   G  P+  ++S +++      +  
Sbjct: 225 QFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIG 284

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            ++D L  M EKGI PTV TY+  +  LC  GR++DA  L+  M + G  PS +TY    
Sbjct: 285 EAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAII 344

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                      A+ +Y +M ++GL VPN  +YN LI       R  +  +I++ ++G G 
Sbjct: 345 SGLFRAGKMELAIGMYHKMLKEGL-VPNTVTYNALINELCTEGRFGIALKIFDWMEGHGT 403

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
             +  +Y  +I GL      ++A   F +M++ G  P  VT+ TL
Sbjct: 404 LANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTL 448



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 139/310 (44%), Gaps = 26/310 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR--------------- 46
           YT++I G  +  ++++A     +M++ G+ PN VTYN L+N +C                
Sbjct: 340 YTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWME 399

Query: 47  -RASLHPSERFEKTIRN---------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
              +L  ++ + + I+          A  VF++M   G  P V +++ ++    +     
Sbjct: 400 GHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLN 459

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L  MKE    P   TY  ++   C  G+++ A     EM++ G+ P+  TY    
Sbjct: 460 NATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMI 519

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y      + A+ L+ +M+E+G C  ++ +YN +I      NR     +    +   GL
Sbjct: 520 DGYCKEGKIDVALSLFERMEENG-CSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGL 578

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P+  +YT LI+GLC+      A + F EM +K  LP   T+ +L  GL Q   +    R
Sbjct: 579 QPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAER 638

Query: 277 LKKKLDEESI 286
           L +   E +I
Sbjct: 639 LTENGCEPTI 648



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 132/291 (45%), Gaps = 30/291 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA----SLHPSERFE 57
           Y  LI G+CK  ++D A  F  EM++ G+ PN  TY  +++G C+      +L   ER E
Sbjct: 480 YCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERME 539

Query: 58  KT---------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +                         AEK   +M  +G++P+  +++ +++   +     
Sbjct: 540 ENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATN 599

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           L+    + M++K   P   TY+S++  LC  G+++ AE L      NG  P+ +TY+   
Sbjct: 600 LAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERL----TENGCEPTIDTYSTLV 655

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                   +N A +L   MKE GL  P+M  Y  L+       ++D   EI+N +   G 
Sbjct: 656 SGLCREGRSNEASQLVENMKEKGLS-PSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGF 714

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            P L  Y +LI  LC   + +EA   F  +++K      + +  L  GL+Q
Sbjct: 715 QPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQ 765



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 128/265 (48%), Gaps = 17/265 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G  K NR   AE+F  +M E+G++PN +TY  L+NG+C+  + +          
Sbjct: 550 YNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNL--------- 600

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F EM  +   P+  +++ +++   +  +    +D    + E G  PT+ TYS++V
Sbjct: 601 -AFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGK----VDAAERLTENGCEPTIDTYSTLV 655

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  +A +L+  M   G+ PS E Y      +      + A++++  M   G  
Sbjct: 656 SGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGF- 714

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++  Y +LI     ++R +    I+  +       DL  +T+L+ GL ++    + C 
Sbjct: 715 QPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGD-SDLCM 773

Query: 242 YFVEMIE-KGLLPQKVTFETLYRGL 265
            F+ ++E +   P   T+  L R L
Sbjct: 774 KFLYLMESRNCTPSLHTYIILAREL 798



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 104/206 (50%), Gaps = 1/206 (0%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           + +A+ V+ ++   G++P + +F+ ++++  +  + Q ++   N + +  +CP   TY+S
Sbjct: 178 VTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTS 237

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++   C   +++ A E+   MV++G  P++ TY+              AM +  +M E G
Sbjct: 238 LILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKG 297

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  P +++Y + I     + R+D    +   +   G  P + +YT +I GL    K + A
Sbjct: 298 I-EPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELA 356

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGL 265
              + +M+++GL+P  VT+  L   L
Sbjct: 357 IGMYHKMLKEGLVPNTVTYNALINEL 382



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 79/172 (45%), Gaps = 5/172 (2%)

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
           T+ ++++++  L     +  A+ +  ++  +GV PS  T+N        +     A+ ++
Sbjct: 161 TLYSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVF 220

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
            ++ +  LC P+  +Y  LI       ++D   E+++ +   G  P+  +Y+ LI+GLC 
Sbjct: 221 NKIFQFDLC-PDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCN 279

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRLKKK 280
           + +  EA     EM EKG+ P   T+      L       D +   R + KK
Sbjct: 280 EGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKK 331



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 1/122 (0%)

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
              A  +Y Q+   G+  P++ ++N +I +     ++     ++N +    L PD  +YT
Sbjct: 178 VTSAQNVYAQIFSSGV-KPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYT 236

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
            LI G C  +K  +A + F  M++ G  P  VT+ TL  GL     +     + +++ E+
Sbjct: 237 SLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEK 296

Query: 285 SI 286
            I
Sbjct: 297 GI 298



 Score = 44.3 bits (103), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 6/91 (6%)

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMV---REIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           + GL    ++S+N L+   + L + DMV   + ++  +  SG+ P L ++  +I+ LC+K
Sbjct: 154 DSGLFGFTLYSFNTLL---LQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKK 210

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            K +EA   F ++ +  L P   T+ +L  G
Sbjct: 211 GKVQEAVLVFNKIFQFDLCPDAFTYTSLILG 241



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 65/148 (43%), Gaps = 11/148 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SL+   CK  ++D A      M  +G +P++  Y VL+  +C  +      R E+  
Sbjct: 685 IYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVS------RAEE-- 736

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +F  +  +    D+  +++++    +     L +  L  M+ +   P++ TY  +
Sbjct: 737 --ALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTYIIL 794

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPS 148
            + L   G+    ++ +G  +R    PS
Sbjct: 795 ARELSKVGKSIGTDQ-IGNRLREVSLPS 821


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 139/292 (47%), Gaps = 30/292 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           Y  +I G+C   R   A+R L +MIER + P+V+T+N L++   +   L  +E+      
Sbjct: 334 YNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEML 393

Query: 56  ----FEKTIR---------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
               F  T+                +A+ +FD M      PDV +F+ ++ VY RA +  
Sbjct: 394 HRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRAKRVD 449

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
             +  L  +  +G+     TY++++   C    +  A++L  EM+ +GVCP   T N   
Sbjct: 450 EGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILL 509

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +   +    A++L+  ++   + +  + +YNI+I      +++D   +++  +   G+
Sbjct: 510 YGFCENEKLEEALELFEVIQMSKIDLDTV-AYNIIIHGMCKGSKVDEAWDLFCSLPIHGV 568

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            PD+ +Y ++I G C K    +A   F +M + G  P   T+ TL RG +++
Sbjct: 569 EPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKA 620



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 135/290 (46%), Gaps = 30/290 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF---- 56
           +Y+++I   CK      A+    EM+E+G+ PNV TYN +++G C       ++R     
Sbjct: 298 IYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM 357

Query: 57  ---------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                E  +  AEK+ DEM  R I PD  +++ +++ + + ++ 
Sbjct: 358 IEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNR- 416

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
               D    M +    P V T+++++   C   R+++  +LL E+ R G+  +  TYN  
Sbjct: 417 ---FDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTL 473

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +    + N A  L+++M   G+C P+  + NIL+  F    +++   E++  ++ S 
Sbjct: 474 IHGFCEVDNLNAAQDLFQEMISHGVC-PDTITCNILLYGFCENEKLEEALELFEVIQMSK 532

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +  D  +Y ++IHG+C+  K  EA   F  +   G+ P   T+  +  G 
Sbjct: 533 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGF 582



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 142/329 (43%), Gaps = 63/329 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLG---------------EMIERGVEPNVVTYNVLLNGVCR 46
           + +L++G C  +RI  A    G               +M+E G+ P V+T+N L+NG+C 
Sbjct: 179 FNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLC- 237

Query: 47  RASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMK 106
                     E  +  A  + ++M  +G+  DV ++  +++   +    + +L+ L+ M+
Sbjct: 238 ---------LEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKME 288

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
           E  I P V  YS+++  LC  G   DA+ L  EM+  G+ P+  TYNC    +      +
Sbjct: 289 ETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWS 348

Query: 167 GAMKLYRQMKE--------------------------DGLC--------VPNMHSYNILI 192
            A +L R M E                          + LC         P+  +YN +I
Sbjct: 349 DAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMI 408

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
             F   NR D  + ++ D+  S   PD+ ++  +I   C  ++  E  Q   E+  +GL+
Sbjct: 409 YGFCKHNRFDDAKHMF-DLMAS---PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLV 464

Query: 253 PQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
               T+ TL  G  + D L   + L +++
Sbjct: 465 ANTTTYNTLIHGFCEVDNLNAAQDLFQEM 493



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 134/322 (41%), Gaps = 45/322 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G C   R+  A   + +M+ +G+  +VVTY  ++NG+C+              +
Sbjct: 229 FNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD----------TK 278

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  +M    I+PDV  +S ++    +      +    + M EKGI P V TY+ ++
Sbjct: 279 SALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMI 338

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
              CS GR  DA+ LL +M+   + P   T+N              A KL  +M      
Sbjct: 339 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 398

Query: 178 --------------------------DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
                                     D +  P++ ++N +I ++    R+D   ++  ++
Sbjct: 399 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 458

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              GL  +  +Y  LIHG CE      A   F EMI  G+ P  +T   L  G  +++ L
Sbjct: 459 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 518

Query: 272 RTWRRL-----KKKLDEESITF 288
                L       K+D +++ +
Sbjct: 519 EEALELFEVIQMSKIDLDTVAY 540



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 124/269 (46%), Gaps = 6/269 (2%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           +  LI  +C  +++  +    G++ + G +P+VVT+N LL+G+C    +  +        
Sbjct: 144 FNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMV 203

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
           E     A  +FD+M   G+ P V +F+ +++      +   +   +N M  KG+   V T
Sbjct: 204 ETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVT 263

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y ++V  +C  G  + A  LL +M    + P    Y+            + A  L+ +M 
Sbjct: 264 YGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEML 323

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           E G+  PN+ +YN +I  F +  R    + +  D+    + PD+ ++  LI    ++ K 
Sbjct: 324 EKGI-APNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKL 382

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGL 265
            EA +   EM+ + + P  VT+ ++  G 
Sbjct: 383 FEAEKLCDEMLHRCIFPDTVTYNSMIYGF 411



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 92/179 (51%), Gaps = 10/179 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G+C+++ ++ A+    EMI  GV P+ +T N+LL G C       +E+ E+   
Sbjct: 470 YNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCE------NEKLEE--- 520

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F+ +++  I+ D  +++I++H   +  +   + D    +   G+ P V TY+ ++
Sbjct: 521 -ALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMI 579

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              C    I DA  L  +M  NG  P   TYN   +      + + +++L  +M+ +G 
Sbjct: 580 SGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGF 638



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 123/284 (43%), Gaps = 26/284 (9%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           + ++NR D+A     +M  R +  N+ ++N+L+   C    L  S             F 
Sbjct: 116 FVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFS----------LSTFG 165

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK---------------GICPT 113
           ++   G +PDV +F+ +LH      +   +L    +M E                G+ P 
Sbjct: 166 KLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPV 225

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           V T+++++  LC  GR+ +A  L+ +MV  G+     TY           D   A+ L  
Sbjct: 226 VITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLS 285

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           +M+E  +  P++  Y+ +I            + +++++   G+ P++ +Y  +I G C  
Sbjct: 286 KMEETHI-KPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSF 344

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            +W +A +   +MIE+ + P  +TF  L    ++   L    +L
Sbjct: 345 GRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKL 388



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 112/266 (42%), Gaps = 27/266 (10%)

Query: 23  GEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSF 82
           G + E+G +       V   G      L     + K++ +A   FD M VR   P  T+ 
Sbjct: 52  GRVAEKGTKSLPSLTQVTFEG--EELKLKSGSHYFKSLDDAIDFFDYM-VRS-RPFYTAV 107

Query: 83  SI--VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
               V+ V+ R ++P +++     M+ + I   + +++ ++KC C C ++  +    G++
Sbjct: 108 DCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKL 167

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
            + G  P   T+N            + A+ L+  M E               G   A+  
Sbjct: 168 TKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVE--------------TGFLEAVAL 213

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260
            D + EI       GL P + ++  LI+GLC + +  EA     +M+ KGL    VT+ T
Sbjct: 214 FDQMVEI-------GLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGT 266

Query: 261 LYRGLIQSDMLRTWRRLKKKLDEESI 286
           +  G+ +    ++   L  K++E  I
Sbjct: 267 IVNGMCKMGDTKSALNLLSKMEETHI 292


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 123/266 (46%), Gaps = 10/266 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+I G CK  R+D A +   ++     +PN   YN L+NG C+      + +F   IR
Sbjct: 443 YSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQ------ASKFSDAIR 496

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               V+ +M      P   +++ ++H   +A +   +      M EKG    V TY S++
Sbjct: 497 ----VYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLI 552

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC   +I+ A  L  +++  G+      +N            + A +L  +MKE   C
Sbjct: 553 RGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNC 612

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN L+  F      D    +W  +  +GL PD+ SY   I GLC   +  E  Q
Sbjct: 613 CPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQ 672

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
              EM+  G++P  +T+  L R +I+
Sbjct: 673 LLNEMLASGIIPTAITWNILVRAVIK 698



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 128/265 (48%), Gaps = 13/265 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I+G C+   +D A R   EMI+ G+ P+VV YN LL G C              + 
Sbjct: 303 YGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGR----------VG 352

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFM-KEKGICPTVATYSSV 120
            A K +D M V GI  +VTS++I+L           + D    + K+  + P + T+S++
Sbjct: 353 EAWKFWDSMSVSGIR-NVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTM 411

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G    + ++L E   +G      +Y+            + A+KLY ++  D  
Sbjct: 412 IHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSF 471

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN H YN LI  F   ++      +++ +  +   P   +Y  LIHGLC+ +K+ EA 
Sbjct: 472 -KPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEAS 530

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
           ++  EM+EKG +    T+ +L RGL
Sbjct: 531 RFTREMLEKGCMLDVNTYGSLIRGL 555



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 135/294 (45%), Gaps = 12/294 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++L+ G+ K NR+D A   L EM    V+P+ V YN LL G  R         FEK +R
Sbjct: 197 YSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNG------EFEKAMR 250

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             E++   +R  G  P++ +++++L    +    + + D    M      P + TY +++
Sbjct: 251 VWEQL---VRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMI 307

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    ++ A  +  EM++ G+ P    YN   K +        A K +  M   G  
Sbjct: 308 HGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSG-- 365

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDV-KGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           + N+ SYNI++        +D   ++W  + K   L PD+ +++ +IHGLCEK    ++ 
Sbjct: 366 IRNVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSL 425

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           Q   E    G    + ++ ++  GL +   L    +L +K+  +S    S   N
Sbjct: 426 QILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYN 479



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 128/304 (42%), Gaps = 47/304 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y SL+ G+C   R+  A +F   M   G+  NV +YN++L G+     +  +    + +
Sbjct: 337 IYNSLLKGFCHAGRVGEAWKFWDSMSVSGIR-NVTSYNIMLKGLFDGGMVDKATDLWELL 395

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
              +          + PD+ +FS ++H          SL  L   +  G      +YSS+
Sbjct: 396 EKDDS---------LSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSM 446

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  GR++DA +L  ++  +   P++  YN     +      + A+++Y QM E+  
Sbjct: 447 ISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAEND- 505

Query: 181 CVPNMHSYNILI----------------------GMFMALN-------------RMDMVR 205
           C P   +YN LI                      G  + +N             ++D   
Sbjct: 506 CSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGAL 565

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-GLLPQKVTFETLYRG 264
            +WN +   GL  D+  + +LIHGLC   K  EA Q   EM EK    P  VT+ TL  G
Sbjct: 566 ALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDG 625

Query: 265 LIQS 268
             ++
Sbjct: 626 FYET 629



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 115/231 (49%), Gaps = 12/231 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+C+ ++   A R   +M E    P  +TYN L++G+C+      + RF +  
Sbjct: 477 IYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTR-- 534

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                   EM  +G   DV ++  ++    R  +   +L   N + +KG+   V  ++ +
Sbjct: 535 --------EMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNIL 586

Query: 121 VKCLCSCGRIEDAEELLGEMV-RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +  LCS G++++A +LL EM  +N  CP+  TYN     +      + A  L+  + E+G
Sbjct: 587 IHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENG 646

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
           L VP++ SYN  I    + NR     ++ N++  SG+ P   ++ +L+  +
Sbjct: 647 L-VPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWNILVRAV 696



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 110/271 (40%), Gaps = 49/271 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEM----IERGVEPNVVTYNVLLNGVCRRASLHPSERFE 57
           + +L+  + +  R   A+ F   +      R + PN+ TYN++L  +C R  L       
Sbjct: 123 HNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVRGDLD------ 176

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117
                A  +FD +R RG+ PD                                     TY
Sbjct: 177 ----RAVTLFDSLRCRGLAPDRI-----------------------------------TY 197

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           S+++       R+++A  LL EM    V P A  YN          +   AM+++ Q+  
Sbjct: 198 STLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVR 257

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
           D    PN+ +YN+++     L       ++W  +  +   PD+ +Y  +IHGLC      
Sbjct: 258 DPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVD 317

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            A + + EMI+ GL+P  V + +L +G   +
Sbjct: 318 SAARVYSEMIKTGLVPDVVIYNSLLKGFCHA 348



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 94/215 (43%), Gaps = 10/215 (4%)

Query: 74  GIEPDVTSFSIVLHVYSRAHQPQ------LSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127
           G  P V S + +L  + RA +         SL    F +   I P + TY+ +++ LC  
Sbjct: 115 GCNPGVRSHNALLDAFVRARRFSDADAFFASLSHGAFGRR--IAPNLQTYNIMLRSLCVR 172

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
           G ++ A  L   +   G+ P   TY+     +      + A+ L  +M    +  P+   
Sbjct: 173 GDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEV-QPDAVC 231

Query: 188 YNILIGMFMALNRMDMVREIWND-VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
           YN L+G        +    +W   V+  G  P+L +Y +++ GLC+   +KEA   +  M
Sbjct: 232 YNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERM 291

Query: 247 IEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +     P  +T+ T+  GL +S  + +  R+  ++
Sbjct: 292 VANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEM 326



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 11/132 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           M+  LI+G C   ++D A + L EM E+    PNVVTYN L++G       + +  F+K 
Sbjct: 582 MHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDG------FYETGCFDK- 634

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
              A  ++  +   G+ PD+ S++  +      ++    +  LN M   GI PT  T++ 
Sbjct: 635 ---AASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWNI 691

Query: 120 VVKCLCSCGRIE 131
           +V+ +   G I+
Sbjct: 692 LVRAVIKYGPIQ 703



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG----PDLD 221
           + A+  +R++     C P + S+N L+  F+   R       +  +     G    P+L 
Sbjct: 101 DAALAAFRRLPSFLGCNPGVRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQ 160

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           +Y +++  LC +     A   F  +  +GL P ++T+ TL  G ++++ L
Sbjct: 161 TYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRL 210


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 139/292 (47%), Gaps = 30/292 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           Y  +I G+C   R   A+R L +MIER + P+V+T+N L++   +   L  +E+      
Sbjct: 329 YNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEML 388

Query: 56  ----FEKTIR---------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
               F  T+                +A+ +FD M      PDV +F+ ++ VY RA +  
Sbjct: 389 HRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRAKRVD 444

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
             +  L  +  +G+     TY++++   C    +  A++L  EM+ +GVCP   T N   
Sbjct: 445 EGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILL 504

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +   +    A++L+  ++   + +  + +YNI+I      +++D   +++  +   G+
Sbjct: 505 YGFCENEKLEEALELFEVIQMSKIDLDTV-AYNIIIHGMCKGSKVDEAWDLFCSLPIHGV 563

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            PD+ +Y ++I G C K    +A   F +M + G  P   T+ TL RG +++
Sbjct: 564 EPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKA 615



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 135/290 (46%), Gaps = 30/290 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF---- 56
           +Y+++I   CK      A+    EM+E+G+ PNV TYN +++G C       ++R     
Sbjct: 293 IYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM 352

Query: 57  ---------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                E  +  AEK+ DEM  R I PD  +++ +++ + + ++ 
Sbjct: 353 IEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNR- 411

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
               D    M +    P V T+++++   C   R+++  +LL E+ R G+  +  TYN  
Sbjct: 412 ---FDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTL 468

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +    + N A  L+++M   G+C P+  + NIL+  F    +++   E++  ++ S 
Sbjct: 469 IHGFCEVDNLNAAQDLFQEMISHGVC-PDTITCNILLYGFCENEKLEEALELFEVIQMSK 527

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           +  D  +Y ++IHG+C+  K  EA   F  +   G+ P   T+  +  G 
Sbjct: 528 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGF 577



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 142/324 (43%), Gaps = 58/324 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLG----------EMIERGVEPNVVTYNVLLNGVCRRASLH 51
           + +L++G C  +RI  A    G          +M+E G+ P V+T+N L+NG+C      
Sbjct: 179 FNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLINGLC------ 232

Query: 52  PSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC 111
                E  +  A  + ++M  +G+  DV ++  +++   +    + +L+ L+ M+E  I 
Sbjct: 233 ----LEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIK 288

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P V  YS+++  LC  G   DA+ L  EM+  G+ P+  TYNC    +      + A +L
Sbjct: 289 PDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRL 348

Query: 172 YRQMKE--------------------------DGLC--------VPNMHSYNILIGMFMA 197
            R M E                          + LC         P+  +YN +I  F  
Sbjct: 349 LRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCK 408

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
            NR D  + ++ D+  S   PD+ ++  +I   C  ++  E  Q   E+  +GL+    T
Sbjct: 409 HNRFDDAKHMF-DLMAS---PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTT 464

Query: 258 FETLYRGLIQSDMLRTWRRLKKKL 281
           + TL  G  + D L   + L +++
Sbjct: 465 YNTLIHGFCEVDNLNAAQDLFQEM 488



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 134/322 (41%), Gaps = 45/322 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G C   R+  A   + +M+ +G+  +VVTY  ++NG+C+              +
Sbjct: 224 FNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD----------TK 273

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  +M    I+PDV  +S ++    +      +    + M EKGI P V TY+ ++
Sbjct: 274 SALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMI 333

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
              CS GR  DA+ LL +M+   + P   T+N              A KL  +M      
Sbjct: 334 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 393

Query: 178 --------------------------DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
                                     D +  P++ ++N +I ++    R+D   ++  ++
Sbjct: 394 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 453

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              GL  +  +Y  LIHG CE      A   F EMI  G+ P  +T   L  G  +++ L
Sbjct: 454 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 513

Query: 272 RTWRRL-----KKKLDEESITF 288
                L       K+D +++ +
Sbjct: 514 EEALELFEVIQMSKIDLDTVAY 535



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 123/264 (46%), Gaps = 1/264 (0%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI  +C  +++  +    G++ + G +P+VVT+N LL+G+C    +  +      + 
Sbjct: 144 FNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMV 203

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               +FD+M   G+ P V +F+ +++      +   +   +N M  KG+   V TY ++V
Sbjct: 204 ETGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIV 263

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  G  + A  LL +M    + P    Y+            + A  L+ +M E G+ 
Sbjct: 264 NGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGI- 322

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN +I  F +  R    + +  D+    + PD+ ++  LI    ++ K  EA +
Sbjct: 323 APNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEK 382

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
              EM+ + + P  VT+ ++  G 
Sbjct: 383 LCDEMLHRCIFPDTVTYNSMIYGF 406



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 123/279 (44%), Gaps = 21/279 (7%)

Query: 9   WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFD 68
           + ++NR D+A     +M  R +  N+ ++N+L+   C    L  S             F 
Sbjct: 116 FVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFS----------LSTFG 165

Query: 69  EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK----------GICPTVATYS 118
           ++   G +PDV +F+ +LH      +   +L    +M E           G+ P V T++
Sbjct: 166 KLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVVITFN 225

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +++  LC  GR+ +A  L+ +MV  G+     TY           D   A+ L  +M+E 
Sbjct: 226 TLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEET 285

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
            +  P++  Y+ +I            + +++++   G+ P++ +Y  +I G C   +W +
Sbjct: 286 HI-KPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSD 344

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           A +   +MIE+ + P  +TF  L    ++   L    +L
Sbjct: 345 AQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKL 383



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 92/179 (51%), Gaps = 10/179 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G+C+++ ++ A+    EMI  GV P+ +T N+LL G C       +E+ E+   
Sbjct: 465 YNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCE------NEKLEE--- 515

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F+ +++  I+ D  +++I++H   +  +   + D    +   G+ P V TY+ ++
Sbjct: 516 -ALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMI 574

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              C    I DA  L  +M  NG  P   TYN   +      + + +++L  +M+ +G 
Sbjct: 575 SGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGF 633



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 106/251 (42%), Gaps = 17/251 (6%)

Query: 23  GEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSF 82
           G + E+G +       V   G      L     + K++ +A   FD M VR   P  T+ 
Sbjct: 52  GRVAEKGTKSLPSLTQVTFEG--EELKLKSGSHYFKSLDDAIDFFDYM-VRS-RPFYTAV 107

Query: 83  SI--VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140
               V+ V+ R ++P +++     M+ + I   + +++ ++KC C C ++  +    G++
Sbjct: 108 DCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKL 167

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAM----------KLYRQMKEDGLCVPNMHSYNI 190
            + G  P   T+N            + A+           L+ QM E GL  P + ++N 
Sbjct: 168 TKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGL-TPVVITFNT 226

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           LI       R+     + N + G GL  D+ +Y  +++G+C+    K A     +M E  
Sbjct: 227 LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH 286

Query: 251 LLPQKVTFETL 261
           + P  V +  +
Sbjct: 287 IKPDVVIYSAI 297



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 11/146 (7%)

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           ++DA +    MVR+    +A   N     +      + A+ LYR+M+   + + N++S+N
Sbjct: 87  LDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPL-NIYSFN 145

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC--------- 240
           ILI  F   +++      +  +   G  PD+ ++  L+HGLC + +  EA          
Sbjct: 146 ILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVET 205

Query: 241 -QYFVEMIEKGLLPQKVTFETLYRGL 265
              F +M+E GL P  +TF TL  GL
Sbjct: 206 GSLFDQMVEIGLTPVVITFNTLINGL 231



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 42/81 (51%)

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           N +IG+F+ +NR D+   ++  ++   +  ++ S+ +LI   C+  K   +   F ++ +
Sbjct: 110 NKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTK 169

Query: 249 KGLLPQKVTFETLYRGLIQSD 269
            G  P  VTF TL  GL   D
Sbjct: 170 LGFQPDVVTFNTLLHGLCLED 190


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 129/263 (49%), Gaps = 9/263 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +I   CK  +++ A   + +M   G  PNVV+YN L++G C+             + 
Sbjct: 226 FNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGG-------NGKMY 278

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ V  EM    + P++T+F+I++  + +      S+     M ++ + P V +Y+S++
Sbjct: 279 KADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLI 338

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+ G+I +A  +  +MV  GV P+  TYN     +        A+ ++  +K  G  
Sbjct: 339 NGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQG-A 397

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP    YN+LI  +  L ++D    +  +++  G+ PD+ +Y  LI GLC     + A +
Sbjct: 398 VPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKK 457

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F ++  KG LP  VTF  L  G
Sbjct: 458 LFDQLTSKG-LPDLVTFHILMEG 479



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 135/296 (45%), Gaps = 48/296 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  LI G+ K + +  + +   EM+++ V+PNV++YN L+NG+C              I 
Sbjct: 299 FNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGK----------IS 348

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D+M   G++P++ +++ +++ + +    + +LD    +K +G  PT   Y+ ++
Sbjct: 349 EAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLI 408

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+I+D   L  EM R G+ P   TYNC         +   A KL+ Q+   GL 
Sbjct: 409 DAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL- 467

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP----------------------- 218
            P++ +++IL+  +           +  ++   GL P                       
Sbjct: 468 -PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATN 526

Query: 219 -------------DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
                        ++ SY +L+ G  +K K ++A     EM+EKGL+P ++T+E +
Sbjct: 527 MRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIV 582



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 114/229 (49%), Gaps = 4/229 (1%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           + E V+ EM  R I+P+V +F++V++   +  +   + D +  MK  G  P V +Y++++
Sbjct: 206 DVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLI 265

Query: 122 KCLCSC---GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
              C     G++  A+ +L EMV N V P+  T+N     +    +  G+MK++++M + 
Sbjct: 266 DGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQ 325

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
            +  PN+ SYN LI       ++     + + +  +G+ P+L +Y  LI+G C+    KE
Sbjct: 326 DV-KPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKE 384

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           A   F  +  +G +P    +  L     +   +     LK++++ E I 
Sbjct: 385 ALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIV 433



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 13/192 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY  LI  +CK+ +ID       EM   G+ P+V TYN L+ G+CR  +          I
Sbjct: 403 MYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGN----------I 452

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+K+FD++  +G+ PD+ +F I++  Y R  + + +   L  M + G+ P   TY+ V
Sbjct: 453 EAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIV 511

Query: 121 VKCLCSCGRIEDAEELLGEMVRN-GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +K  C  G ++ A  +  +M +   +  +  +YN   + Y  +     A  L  +M E G
Sbjct: 512 MKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKG 571

Query: 180 LCVPNMHSYNIL 191
           L VPN  +Y I+
Sbjct: 572 L-VPNRITYEIV 582



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 9/130 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+ G+C+      A   L EM + G++P  +TYN+++ G C+  +L  +      +    
Sbjct: 476 LMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQME--- 532

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
                 + R +  +V S++++L  YS+  + + +   LN M EKG+ P   TY  V + +
Sbjct: 533 ------KERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEM 586

Query: 125 CSCGRIEDAE 134
              G + D E
Sbjct: 587 VDQGFVPDIE 596


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 140/287 (48%), Gaps = 11/287 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT LI G C  N+I+ AE     M E GV PNV TYN L++G C+ A+           
Sbjct: 219 VYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLAN----------A 268

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A +++ +M   G+ PDV +F I++    +  + + + +    M +  + P +A Y+S+
Sbjct: 269 KQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSL 328

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G + +A  L  E+ R  V P   TY+   +          A  ++ +M ++G+
Sbjct: 329 IDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGI 388

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            + N  +YN LI       +MD   EI + +  +G+ P++ +++ LI G C+ +  + A 
Sbjct: 389 -LANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAM 447

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
             + EM+ K L P  VT+  +  G  +   ++   +L   + +  IT
Sbjct: 448 GIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGIT 494



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 126/290 (43%), Gaps = 46/290 (15%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+Y   K  R ++  R   EMI  G+ P+V+T+  L++G CR+  L            A+
Sbjct: 153 LLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDL----------LRAQ 202

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           ++FDEMRV                                   KGI PTV  Y+ +++ L
Sbjct: 203 EMFDEMRV-----------------------------------KGIVPTVIVYTILIRGL 227

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           CS  +IE+AE +   M   GV P+  TYN     Y    +A  A++LY+ M  +GL VP+
Sbjct: 228 CSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGL-VPD 286

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + ++ ILI        M   R ++ ++    + P++  Y  LI   C+     EA   F+
Sbjct: 287 VVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFL 346

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           E+    + P   T+  L RGL           + +K+ +E I   S   N
Sbjct: 347 ELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYN 396



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 124/269 (46%), Gaps = 39/269 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G C ++R + A     +M + G+  N VTYN L++G C+          E  + 
Sbjct: 360 YSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCK----------EGKMD 409

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++  +M   G+EP+V +FS ++  Y +    Q ++   + M  K + P V TY++++
Sbjct: 410 KALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMI 469

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +++A +L  +M+ NG+ P+  T +C           + A++L+ +  E    
Sbjct: 470 DGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIE---- 525

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD---SYTMLIHGLCEKQKWKE 238
                                  +    +V   G  P L    +YT LIHGLC+  ++ +
Sbjct: 526 ----------------------FQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSK 563

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           A + F +M   GL P +V +  + RGL Q
Sbjct: 564 AVKLFSDMRRYGLQPDEVIYVVMLRGLFQ 592



 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 22/181 (12%)

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
            P  +L+  N   EK I      YS+++  L     +  A  LL ++V+N V        
Sbjct: 42  SPWKALEFFNAAPEKNI----QLYSAIIHVLVGSKLLSHARYLLNDLVQNLV-------- 89

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
              K ++       A     ++K      PN++   I++     L +M++V E  +    
Sbjct: 90  ---KSHKPYHACQLAFSELSRLKSSKF-TPNVYGELIIV-----LCKMELVEEALSMYHK 140

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI-QSDMLR 272
            G    + +  +L++ L +  +++   + + EMI  GL P  +TF TL  G   Q D+LR
Sbjct: 141 VGAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLR 200

Query: 273 T 273
            
Sbjct: 201 A 201


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 123/263 (46%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G  K  ++D A  FL EM+E G +P+  TY   ++G         ++++ K   
Sbjct: 493 YNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVK--- 549

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                  EM   G+ P+    + +++ Y +  +   +      M E+GI     TY+ ++
Sbjct: 550 -------EMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLM 602

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G++ DAEE+  EM   G+ P   +Y      +    +   A  ++ +M + GL 
Sbjct: 603 NGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGL- 661

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+  YN+L+G F     ++  +E+ +++ G G  P+  +Y  +I G C+     EA Q
Sbjct: 662 TSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQ 721

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F EM  KGL+P    + TL  G
Sbjct: 722 LFDEMKLKGLVPDSFVYTTLVDG 744



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 128/284 (45%), Gaps = 14/284 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y + + G C    +D A   + EM   G  PNVV Y  L+    +++      RF   +R
Sbjct: 423 YGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKS------RFGDAVR 476

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               V  EMR +GI PD   ++ ++   S+A +   +   L  M E G  P   TY + +
Sbjct: 477 ----VLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFI 532

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G    A++ + EM+  GV P+         EY  +     A   +R M E G+ 
Sbjct: 533 SGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGI- 591

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + +  +Y +L+   +   +++   EI+++++G G+ PD+ SY  LI G  +    ++A  
Sbjct: 592 LGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASS 651

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
            F EM++ GL    + +  L  G  +S  +   + L   LDE S
Sbjct: 652 IFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKEL---LDEMS 692



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 127/299 (42%), Gaps = 47/299 (15%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T LI  +CK  ++  A      M+E+G+  +  TY VL+NG+ +             + +
Sbjct: 564 TGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGK----------VND 613

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           AE++F EMR +GI PDV S+  ++  +S+    Q +    + M + G+   V  Y+ ++ 
Sbjct: 614 AEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLG 673

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL-- 180
             C  G IE A+ELL EM   G  P+A TY      Y    D   A +L+ +MK  GL  
Sbjct: 674 GFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVP 733

Query: 181 -------------------------------CVPNMHSYNILIGMFMALNRMDMVREIWN 209
                                          C  +   +N LI       + ++  ++ N
Sbjct: 734 DSFVYTTLVDGCCRLNDVERAITIFETNEKGCASSSAPFNALINWVFKFGKTELTTDMIN 793

Query: 210 DVKGSGLG----PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            +          P+  +Y ++I  LC++   + A + F  M +  L+P  +T+ +L  G
Sbjct: 794 RLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNG 852



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 121/268 (45%), Gaps = 11/268 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT+LI  + + +R   A R L EM E+G+ P+   YN L+ G+ +   +  +  F    
Sbjct: 457 IYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSF---- 512

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                   EM   G +PD  ++   +  Y  A +   +   +  M E G+ P     + +
Sbjct: 513 ------LLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGL 566

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G++ +A      MV  G+   A+TY             N A +++ +M+  G+
Sbjct: 567 INEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGI 626

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ SY  LI  F  L  M     I++++  +GL  ++  Y ML+ G C   + ++A 
Sbjct: 627 A-PDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAK 685

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           +   EM  KG  P  VT+ T+  G  +S
Sbjct: 686 ELLDEMSGKGFPPNAVTYCTIIDGYCKS 713



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 131/291 (45%), Gaps = 30/291 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y  LI G CK  R++ A+  L EM   G+  + V Y++L++G+ +  +   +        
Sbjct: 283 YNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEMV 342

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               E  +  A+ +FD M   G+ P   +++ ++  + R    +
Sbjct: 343 SHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVR 402

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
              + L  +K++ I  +  TY + VK +CS G ++ A  ++ EM  +G  P+   Y    
Sbjct: 403 KGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLI 462

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           K +  +     A+++ ++M+E G+  P+   YN LI       +MD  R    ++  +G 
Sbjct: 463 KTFLQKSRFGDAVRVLKEMREQGIA-PDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGF 521

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            PD  +Y   I G  E  ++  A +Y  EM+E G++P KV    L  GLI 
Sbjct: 522 KPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKV----LCTGLIN 568



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 121/272 (44%), Gaps = 14/272 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+ K+  +  A     EM++ G+  NV+ YN+LL G CR             I 
Sbjct: 633 YGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGE----------IE 682

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+++ DEM  +G  P+  ++  ++  Y ++     +    + MK KG+ P    Y+++V
Sbjct: 683 KAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLV 742

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK-EYRGRKDANGAMKLYRQMKE--D 178
              C    +E A  +  E    G   S+  +N      ++  K       + R M    D
Sbjct: 743 DGCCRLNDVERAITIF-ETNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFD 801

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
               PN  +YNI+I        ++  +E+++ ++ + L P + +YT L++G  +  +  E
Sbjct: 802 KFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSE 861

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270
               F E+I  G+ P  + +  +    ++  M
Sbjct: 862 MFSVFDEVIAAGIEPDNIMYSVIINAFLKEGM 893



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 127/311 (40%), Gaps = 47/311 (15%)

Query: 8   GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVF 67
           G   +N +D A      M  +G+ P+  +YN+L++G+C+          +K + +A+ + 
Sbjct: 255 GTATLN-VDEALELKKSMSCKGLVPSRQSYNLLIDGLCK----------QKRLEDAKSLL 303

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127
            EM   G+  D  ++SI++    +      +   ++ M   G       Y   +  +   
Sbjct: 304 VEMNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKE 363

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNC----FFKEYRGRK-------------------- 163
           G +E A+ L   M+  GV P A  Y      FF+E   RK                    
Sbjct: 364 GAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTY 423

Query: 164 -----------DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212
                      D +GA  + ++M   G C PN+  Y  LI  F+  +R      +  +++
Sbjct: 424 GTAVKGMCSSGDLDGAYNIVKEMGASG-CRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMR 482

Query: 213 GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272
             G+ PD   Y  LI GL + +K  EA  + +EM+E G  P   T+     G I++    
Sbjct: 483 EQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFA 542

Query: 273 TWRRLKKKLDE 283
           +  +  K++ E
Sbjct: 543 SADKYVKEMLE 553



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 121/253 (47%), Gaps = 16/253 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L+ G+C+   I+ A+  L EM  +G  PN VTY  +++G C+   L  +E F+   
Sbjct: 667 IYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDL--AEAFQ--- 721

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                +FDEM+++G+ PD   ++ ++    R +  + ++       EKG   + A ++++
Sbjct: 722 -----LFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFE-TNEKGCASSSAPFNAL 775

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVC----PSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           +  +   G+ E   +++  ++         P+  TYN          +   A +L+  M+
Sbjct: 776 INWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQ 835

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           +  L +P + +Y  L+  +  + R   +  ++++V  +G+ PD   Y+++I+   ++   
Sbjct: 836 KANL-MPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMT 894

Query: 237 KEACQYFVEMIEK 249
            +A     +M  K
Sbjct: 895 TKALVLLDQMFAK 907



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 117/281 (41%), Gaps = 33/281 (11%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+    K NR+D+       M+ER V  +V +Y +L+   CR  ++  ++          
Sbjct: 195 LLDALLKRNRLDLFWDVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAK---------- 244

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE----KGICPTVATYSSV 120
                              ++L          L++D+   +K+    KG+ P+  +Y+ +
Sbjct: 245 ------------------DVLLKTEEELGTATLNVDEALELKKSMSCKGLVPSRQSYNLL 286

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC   R+EDA+ LL EM   G+      Y+         ++A+ A  L  +M   G 
Sbjct: 287 IDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEMVSHGF 346

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +  M  Y+  I +      M+  + +++ +   G+ P   +Y  LI G   ++  ++  
Sbjct: 347 SIDPMM-YDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGY 405

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +  VE+ ++ ++    T+ T  +G+  S  L     + K++
Sbjct: 406 ELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEM 446


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 141/287 (49%), Gaps = 18/287 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+ G C   R   A R + +M+ R + PNV+T+  L+N   R          E    
Sbjct: 212 YNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFTALINAFVR----------EGKFL 261

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+K ++EM  R I+PDV +++ ++H      Q   +   L+ M  KG  P V TY++++
Sbjct: 262 EAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLI 321

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKEDG 179
              C   R+++  +L+ EM + G+     T+N   + Y   GR DA  A +++ +M    
Sbjct: 322 NGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDA--AQEIFSRMGSR- 378

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              PN+ +Y+IL+       R++    ++  ++ S +  D+ +Y ++IHG+C     ++A
Sbjct: 379 ---PNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNIVIHGMCMIGNVEDA 435

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              F  +  KGL P  VT+ T+  G  +  +      L +K+ E+ +
Sbjct: 436 WDLFCSLSFKGLEPDVVTYTTMISGFCRKRLWDKADFLYRKMQEDGL 482



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 130/268 (48%), Gaps = 13/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I   C+ +R  +A   +G+M++ G EP+VVT + L+NG C+        R    + 
Sbjct: 107 YNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQ------GNRVFGAVD 160

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K+ +EMR +    DV  ++ ++  + +      +L     M+  G+     TY+S+V
Sbjct: 161 LVSKM-EEMRCK---LDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLV 216

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR  DA  L+ +MV   + P+  T+      +        A K Y +M     C
Sbjct: 217 TGLCCSGRRSDAARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRR--C 274

Query: 182 V-PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           + P++ +YN +I       ++D  ++I + +   G  PD+ +Y  LI+G C+ ++  E  
Sbjct: 275 IDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGT 334

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           +   EM ++GL+   VTF T+ +G  Q+
Sbjct: 335 KLVREMSQRGLVVDTVTFNTIIQGYFQA 362



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 138/299 (46%), Gaps = 16/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ L+    K    D+       M   G+  ++ TYN+++N +CR        RF     
Sbjct: 72  FSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNIVINCLCR------CSRFVI--- 122

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V  +M   G EPDV + S +++ + + ++   ++D ++ M+E      V  Y++++
Sbjct: 123 -ALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTII 181

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + +A  L G M R+GV     TYN            + A +L R M    + 
Sbjct: 182 DGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDI- 240

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VPN+ ++  LI  F+   +    ++ + ++    + PD+ +Y  +IHGLC   +  EA Q
Sbjct: 241 VPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQ 300

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE-----ESITFGSEFQNY 295
               M+ KG  P  VT+ TL  G  ++  +    +L +++ +     +++TF +  Q Y
Sbjct: 301 ILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGY 359



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 108/243 (44%), Gaps = 6/243 (2%)

Query: 53  SERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP 112
           ++R    +  A  +F  M      P +  FS +L   +++    L +   + M+  GI  
Sbjct: 43  TKRLSMNLDEAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGH 102

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
            + TY+ V+ CLC C R   A  ++G+M++ G  P   T +     +       GA+ L 
Sbjct: 103 DLYTYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLV 162

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
            +M E+  C  ++  YN +I  F     ++    ++  ++  G+  D  +Y  L+ GLC 
Sbjct: 163 SKM-EEMRCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCC 221

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESIT 287
             +  +A +   +M+ + ++P  +TF  L    ++       ++     +++ +D +  T
Sbjct: 222 SGRRSDAARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFT 281

Query: 288 FGS 290
           + S
Sbjct: 282 YNS 284


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 134/264 (50%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+ K   ++ A     EM++RG+ P++VTYN +++ +C+  ++  +E F + + 
Sbjct: 225 YNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMV 284

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N          + + P+  +++ +++ YS   Q + ++     M+   I P V T S ++
Sbjct: 285 N----------KRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM 334

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+I++A ++   M   G  P   +YN     Y  +        L+  M  DG+ 
Sbjct: 335 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGI- 393

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ +++N+LI  +     +D    I+N+++  G+ PD+ +Y  +I  LC   K  +A +
Sbjct: 394 APDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 453

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F +MI++G+ P K  +  L +G 
Sbjct: 454 KFNQMIDQGVAPDKYAYNCLIQGF 477



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 123/260 (47%), Gaps = 11/260 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+   CK  +I  A      M  +G  P+V +YN++LNG   +  L           +  
Sbjct: 333 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCL----------VDMT 382

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +FD M   GI PD  +F++++  Y+       ++   N M++ G+ P V TY +V+  L
Sbjct: 383 DLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 442

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G+++DA E   +M+  GV P    YNC  + +        A +L  ++  +G+ + +
Sbjct: 443 CRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHL-D 501

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           +  ++ +I     L R+   + I++     GL PD   Y ML+ G C   K ++A + F 
Sbjct: 502 IVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFD 561

Query: 245 EMIEKGLLPQKVTFETLYRG 264
            M+  G+ P  V + TL  G
Sbjct: 562 AMVSAGIEPNVVGYGTLVNG 581



 Score =  100 bits (248), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 136/296 (45%), Gaps = 21/296 (7%)

Query: 5   LIYGWCKINRIDMA-ERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           L+ G+C+  R D A +  L    E G  P+V +Y++LL  +C +     ++   + +   
Sbjct: 155 LLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 214

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             V          P+V +++ V+  + +      + D    M ++GI P + TY+SVV  
Sbjct: 215 GAV--------CSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHA 266

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC    ++ AE  L +MV   V P+  TYN     Y        A++++++M+   + +P
Sbjct: 267 LCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSI-LP 325

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++ + ++L+G      ++   R++++ +   G  PD+ SY ++++G   K    +    F
Sbjct: 326 DVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLF 385

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
             M+  G+ P   TF  L +      M          LD+  I F +E +++  KP
Sbjct: 386 DLMLGDGIAPDFYTFNVLIKAYANCGM----------LDKAMIIF-NEMRDHGVKP 430



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 133/287 (46%), Gaps = 11/287 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++S+I   CK+ R+  A+      +  G+ P+ V YN+L++G C         + EK +R
Sbjct: 505 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVG------KMEKALR 558

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               VFD M   GIEP+V  +  +++ Y +  +    L     M ++GI P+   YS ++
Sbjct: 559 ----VFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIII 614

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR   A+    EM  +G+     TYN   +     +  + A+ L+++++   + 
Sbjct: 615 DGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVK 674

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N+ + N +I       R++  ++++  +  S L P + +Y+++I  L ++   +EA  
Sbjct: 675 I-NIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAED 733

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
            F  M   G  P       + R L++ + +        K+DE + + 
Sbjct: 734 MFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSL 780



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 141/304 (46%), Gaps = 28/304 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C    +  A+  + E++  G+  ++V ++ ++N +C+             + 
Sbjct: 470 YNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR----------VM 519

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A+ +FD     G+ PD   +++++  Y    + + +L   + M   GI P V  Y ++V
Sbjct: 520 DAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLV 579

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE-YRGRKDANGAMKLYRQMKEDGL 180
              C  GRI++   L  EM++ G+ PS   Y+      +   +     MK + +M E G+
Sbjct: 580 NGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMK-FHEMTESGI 638

Query: 181 CVPNMHSYNILI-GMFMALNR-MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
            + ++ +YNI++ G+F   NR  D    ++ +++   +  ++ +   +I G+ + ++ +E
Sbjct: 639 AM-DICTYNIVLRGLFK--NRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEE 695

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
           A   F  +    L+P  VT+  +   LI           K+ L EE+    S  QN   +
Sbjct: 696 AKDLFASISRSRLVPSVVTYSIMITNLI-----------KEGLVEEAEDMFSSMQNAGCE 744

Query: 299 PYRR 302
           P  R
Sbjct: 745 PNSR 748



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 104/216 (48%), Gaps = 2/216 (0%)

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           R + P   +++I++   +RAH+P+L+L     +   G+   +   + +++  C   R ++
Sbjct: 108 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDE 167

Query: 133 AEE-LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG-LCVPNMHSYNI 190
           A + LL      G  P   +Y+   K    +  +  A  L R M E G +C PN+ +YN 
Sbjct: 168 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNT 227

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           +I  F     ++   +++ ++   G+ PDL +Y  ++H LC+ +   +A  +  +M+ K 
Sbjct: 228 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 287

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +LP   T+  L  G   +   +   R+ K++   SI
Sbjct: 288 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSI 323



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 113/276 (40%), Gaps = 47/276 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+    + +R ++A  F G+++  G+  N++  N LL G C                
Sbjct: 117 YAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCE--------------- 161

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K  DE           +  I+LH       P+L           G  P V +YS ++
Sbjct: 162 --AKRTDE-----------ALDILLH-----RTPEL-----------GCVPDVFSYSILL 192

Query: 122 KCLCSCGRIEDAEELLGEMVRNG-VC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           K LC  G+   A++LL  M   G VC P+   YN     +    D N A  L+++M + G
Sbjct: 193 KSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRG 252

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  P++ +YN ++        MD        +    + P+  +Y  LI+G     +WKEA
Sbjct: 253 I-PPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEA 311

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
            + F EM    +LP  VT   L   L +   ++  R
Sbjct: 312 VRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEAR 347



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 115/257 (44%), Gaps = 11/257 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L+ G+C + +++ A R    M+  G+EPNVV Y  L+NG C+             I
Sbjct: 539 VYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGR----------I 588

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                +F EM  RGI+P    +SI++     A +   +  K + M E GI   + TY+ V
Sbjct: 589 DEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIV 648

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++ L      ++A  L  E+    V  +  T N         +    A  L+  +    L
Sbjct: 649 LRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRL 708

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VP++ +Y+I+I   +    ++   ++++ ++ +G  P+      ++  L +K +   A 
Sbjct: 709 -VPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAG 767

Query: 241 QYFVEMIEKGLLPQKVT 257
            Y  ++ E+    + +T
Sbjct: 768 AYLSKIDERNFSLEHLT 784


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 128/264 (48%), Gaps = 14/264 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I+  C   ++  A   L  M      P++VT+N LL+G C+ A + P         
Sbjct: 242 YNSIIHALCVAGKVVEAAEILKTM---SCSPDLVTFNTLLDGFCK-AGMLP--------- 288

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V +EM    I PDV +++I+++   R  Q Q++   L  +  +G  P V  Y+S+V
Sbjct: 289 RALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLV 348

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G IE+A +L+ EM   G       Y+     Y    + + A ++  +M    + 
Sbjct: 349 DGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINM- 407

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP + +YNI++G  +    +     + +D+   G  PD+ +Y  LI GLC+  + +EAC 
Sbjct: 408 VPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACD 467

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
              EM  +G  P  VT  ++  GL
Sbjct: 468 LADEMASRGCFPNDVTLGSVVFGL 491



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 134/282 (47%), Gaps = 14/282 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKT 59
           ++  LI+G  K    D A +    M    V+P +VTYN +++G+C+  +L  + E  E+ 
Sbjct: 99  IFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEM 158

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           IR   K           PD+ +++ +++ + RA + + +      MK  GI P V T + 
Sbjct: 159 IRKGGKS---------APDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNI 209

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +V  +C  G +E+A E+L  M   G  P   TYN              A ++ + M    
Sbjct: 210 LVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMS--- 266

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C P++ ++N L+  F     +    E+  ++    + PD+ +YT+L++GLC   + + A
Sbjct: 267 -CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVA 325

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
                E++ +G +P  + + +L  GL +S  +    +L K++
Sbjct: 326 FYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEM 367



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 137/282 (48%), Gaps = 16/282 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERG--VEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           Y ++I G CK   ++ A   L EMI +G    P++VTYN L+N   R +           
Sbjct: 135 YNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASR---------- 184

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           IR A    ++M+  GI PDV + +I++    +    + +L+ L+ MK  G  P V TY+S
Sbjct: 185 IREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNS 244

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC  G++ +A E+L  M      P   T+N     +        A+++  +M  + 
Sbjct: 245 IIHALCVAGKVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCREN 301

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           + +P++ +Y IL+     + ++ +   +  ++   G  PD+ +YT L+ GLC+  + +EA
Sbjct: 302 I-LPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEA 360

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            +   EM  +G     V + +L  G  ++  +   R +  ++
Sbjct: 361 HKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEM 402



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 115/250 (46%), Gaps = 16/250 (6%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           +++  G  PN+VT+ +L+ G C+      +  F + +       DE  V    PDV  F+
Sbjct: 52  DLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFLRAL-------DEFSV---APDVYIFN 101

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
           +++H   +   P  ++     M+   + P + TY++V+  LC  G +E A ELL EM+R 
Sbjct: 102 VLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRK 161

Query: 144 G--VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201
           G    P   TYN     +        A     +MK  G+  P++ + NIL+        +
Sbjct: 162 GGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGIN-PDVLTCNILVSGICKDGDV 220

Query: 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   EI + +K +G  PD+ +Y  +IH LC   K  EA +    M      P  VTF TL
Sbjct: 221 EEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTM---SCSPDLVTFNTL 277

Query: 262 YRGLIQSDML 271
             G  ++ ML
Sbjct: 278 LDGFCKAGML 287



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 124/268 (46%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +L+ G+CK   +  A   L EM    + P+V+TY +L+NG+CR             ++
Sbjct: 274 FNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQ----------VQ 323

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + +E+  +G  PDV +++ ++    ++ + + +   +  M  +G    V  YSS+V
Sbjct: 324 VAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLV 383

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +  A E+L EMV   + P   TYN            + A+ L   +   G  
Sbjct: 384 SGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGY- 442

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++ +YN LI      NR+    ++ +++   G  P+  +   ++ GLC   +  +A  
Sbjct: 443 VPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWS 502

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
             VEM  K   P  V + +L  GL +SD
Sbjct: 503 LVVEMSRKRHAPNVVVYTSLIDGLCKSD 530



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 129/280 (46%), Gaps = 16/280 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSL+ G CK   I+ A + + EM  RG    VV Y+ L++G CR  ++H          
Sbjct: 344 YTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVH---------- 393

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++  EM    + P + +++IVL    +      ++  ++ +  +G  P V TY++++
Sbjct: 394 KAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLI 453

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETY-NCFFKEYR-GRKDANGAMKLYRQMKEDG 179
             LC   R+ +A +L  EM   G  P+  T  +  F   R GR D   ++ +    K   
Sbjct: 454 DGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHA 513

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              PN+  Y  LI      +RMD    + + ++G G+  D  +Y  LI  +    +  EA
Sbjct: 514 ---PNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEA 570

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
              + EM+ +G LP   T +TL    + + +   W  L++
Sbjct: 571 MAMYDEMVARGFLPDGSTSKTLEEAAMSNSVFE-WTNLEE 609



 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 41/84 (48%)

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++HSYN L+ + +         +++ D+  SG  P+L ++ +LI G C+  +   A ++ 
Sbjct: 26  DVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFL 85

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQ 267
             + E  + P    F  L  GL +
Sbjct: 86  RALDEFSVAPDVYIFNVLIHGLFK 109


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 128/269 (47%), Gaps = 11/269 (4%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIER-GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           S I  + K +  D A      M++  G  P + ++N +LN                  R 
Sbjct: 83  SAIKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAFIE----------SNQWRE 132

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           AE  F   +  G+ P++ +++I++ +  +  Q +     L +M E G+ P + +Y +++ 
Sbjct: 133 AELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLIN 192

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            L   G + DA EL  EM   GV P    YN     +  + D   A ++++++  +    
Sbjct: 193 ALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVY 252

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ +YNI+I     L ++D   E+WN +K +   PDL +++ +IHGL +   +  A + 
Sbjct: 253 PSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKV 312

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           F EMIE GL P   T+  +  GL ++  L
Sbjct: 313 FQEMIESGLSPDVRTYNAMLSGLFRTGKL 341



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 147/301 (48%), Gaps = 25/301 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI   CK  + +  +  L  M E G+ P++++Y  L+N + +  +L           
Sbjct: 152 YNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNL----------L 201

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN-----FMKEKGICPTVAT 116
           +A ++FDEM VRG+ PDV  ++I++  + R         K N      + E  + P+V T
Sbjct: 202 DAVELFDEMSVRGVNPDVMCYNILIDGFLRKGD----FVKANEIWKRLLTESSVYPSVET 257

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y+ ++  LC  G+++++ E+   M +N   P   T++          + N A K++++M 
Sbjct: 258 YNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMI 317

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           E GL  P++ +YN ++       +++   E+WN V       ++ SY MLI GL + +K 
Sbjct: 318 ESGLS-PDVRTYNAMLSGLFRTGKLNKCFELWN-VMSKNNCCNIVSYNMLIQGLLDNKKV 375

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYH 296
           ++A  Y+  + E+GL     T+  L  GL ++  L    R+ ++ + E    G++   + 
Sbjct: 376 EQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENE----GADLDTFA 431

Query: 297 F 297
           +
Sbjct: 432 Y 432



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 150/355 (42%), Gaps = 63/355 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           ++S+I+G  K    + AE+   EMIE G+ P+V TYN +L+G+ R   L+          
Sbjct: 293 FSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMS 352

Query: 57  -------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
                               K +  A   +  +  RG++ D T++ ++++   +      
Sbjct: 353 KNNCCNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNK 412

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           +L  L   + +G       YSS+V  LC  G +E A EL+ +M +N    ++  +N    
Sbjct: 413 ALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLIN 472

Query: 158 EYRGRKDANGAMKLYRQMKE--------------DGLCV--------------------P 183
            Y        A+ + R+MK               +GLC                     P
Sbjct: 473 GYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKP 532

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           +M +Y++LI       ++DM   +W+      L PDL  + ++IHGLC  QK   A + F
Sbjct: 533 DMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIF 592

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQS----DMLRTWRR-LKKKLDEESITFGSEFQ 293
            +M +   +P  VT  T+  GL ++    + L+ W R L+  L  + I++   F+
Sbjct: 593 TQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFK 647



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 137/271 (50%), Gaps = 13/271 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+++G CK   ++ A   + +M +   + N   +N L+NG  R   L           
Sbjct: 432 YSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKL----------E 481

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  V  EM+ +   P V S++ +++   +A +   +   L  M E+G+ P + TYS ++
Sbjct: 482 EAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLI 541

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   +++ A  L  + +   + P  + +N         +  + A++++ QM++   C
Sbjct: 542 DGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVN-C 600

Query: 182 VPNMHSYN-ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           VP++ ++N I+ G++ A + ++ ++ IW+ +  +GL PD+ SY +   GLC   +  +A 
Sbjct: 601 VPDLVTHNTIMEGLYKAGDCVEALK-IWDRILEAGLQPDIISYNITFKGLCSCARVSDAI 659

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           ++  + +++G+LP   T+  L R ++    L
Sbjct: 660 EFLYDALDRGILPNAPTWNVLVRAVVDDKPL 690



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 129/301 (42%), Gaps = 11/301 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI    K   +  A     EM  RGV P+V+ YN+L++G  R+     +    K + 
Sbjct: 187 YGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLL 246

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               V+         P V +++I+++   +  +   S++  N MK+    P + T+SS++
Sbjct: 247 TESSVY---------PSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMI 297

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G    AE++  EM+ +G+ P   TYN            N   +L+  M ++  C
Sbjct: 298 HGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCC 357

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             N+ SYN+LI   +   +++     W  +   GL  D  +Y +LI+GLC+     +A +
Sbjct: 358 --NIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALR 415

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYR 301
              E   +G       + ++  GL +  ML     L  ++ +      S   N     Y 
Sbjct: 416 ILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYV 475

Query: 302 R 302
           R
Sbjct: 476 R 476



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 108/227 (47%), Gaps = 3/227 (1%)

Query: 63  AEKVFDEM-RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           A  +F  M  + G  P + SF+ +L+ +  ++Q + +     + +  G+ P + TY+ ++
Sbjct: 97  ALNLFQNMVDIFGCNPGIRSFNSMLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNILI 156

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   + E  + LL  M  NG+ P   +Y           +   A++L+ +M   G+ 
Sbjct: 157 KISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVN 216

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDV-KGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            P++  YNILI  F+         EIW  +   S + P +++Y ++I+GLC+  K  E+ 
Sbjct: 217 -PDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESM 275

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           + +  M +    P   TF ++  GL ++       ++ +++ E  ++
Sbjct: 276 EMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLS 322



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 88/213 (41%), Gaps = 6/213 (2%)

Query: 87  HVYSRAHQPQLSLDK---LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
           H+  R   P+L +     ++ M+ +    +     S +K    C   + A  L   MV  
Sbjct: 48  HILRRLMDPKLVVHVGRIVDLMRAQRCTCSEDVALSAIKAYAKCSMPDQALNLFQNMVDI 107

Query: 144 GVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202
             C P   ++N     +        A   +   +  G+  PN+ +YNILI +     + +
Sbjct: 108 FGCNPGIRSFNSMLNAFIESNQWREAELFFTYFQTAGMS-PNLQTYNILIKISCKKRQFE 166

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
             + +   +  +GL PD+ SY  LI+ L +     +A + F EM  +G+ P  + +  L 
Sbjct: 167 KGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILI 226

Query: 263 RGLI-QSDMLRTWRRLKKKLDEESITFGSEFQN 294
            G + + D ++     K+ L E S+    E  N
Sbjct: 227 DGFLRKGDFVKANEIWKRLLTESSVYPSVETYN 259


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 134/282 (47%), Gaps = 11/282 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+ K N+ID A +    M  RG  P+VVTYN+++  +C R  L           
Sbjct: 134 YNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLEL--------- 184

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V DE+   G +P V +++I++       +   +L+  + +  +G+ P + TY++++
Sbjct: 185 -AFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAII 243

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + +C  G  + A + +  +   G  P   +YN   + +  +       +L + M   G C
Sbjct: 244 RGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSG-C 302

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +++ILI  F    R+     +   +K  GL PD  SY  LI   C++ +   A +
Sbjct: 303 EPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIE 362

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           Y  +M+  G LP  V + T+   L +         + +KLDE
Sbjct: 363 YLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDE 404



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 132/259 (50%), Gaps = 12/259 (4%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T LI G+     +  A R + E++E   +P+V +YN +++G  +             I +
Sbjct: 101 TKLIKGFFNSRNLKKAMRVM-EILETYGDPDVYSYNAMISGFSK----------ANQIDS 149

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A +VFD MR RG  PDV +++I++       + +L+ + ++ + + G  P+V TY+ +++
Sbjct: 150 ANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIE 209

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
                GRI +A EL  E+V  G+ P   TYN   +        + A+   R +   G C 
Sbjct: 210 ATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARG-CN 268

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ SYNIL+  F+  +R +    +  D+  SG  P++ ++++LI   C + + +EA   
Sbjct: 269 PDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNV 328

Query: 243 FVEMIEKGLLPQKVTFETL 261
              M EKGL P   +++ L
Sbjct: 329 LEVMKEKGLTPDSYSYDPL 347



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 131/267 (49%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G CK    D A  F+  +  RG  P+VV+YN+LL     R+ L+ S R+E    
Sbjct: 239 YNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILL-----RSFLNKS-RWE---- 288

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           + E++  +M + G EP+V + SI++  + R  + + +++ L  MKEKG+ P   +Y  ++
Sbjct: 289 DGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLI 348

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GR++ A E L +MV +G  P    YN           A+ A+ ++ ++ E G C
Sbjct: 349 SAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVG-C 407

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +YN +     +        E+ +++   G+ PD  +Y  LI  LC      EA  
Sbjct: 408 PPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIG 467

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
             V+M      P  ++F  +  G+ ++
Sbjct: 468 LLVDMEATRFQPTVISFNIVLLGMCKA 494



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 137/290 (47%), Gaps = 16/290 (5%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           C+  + + +  FL  ++ +G +P+VV    L+ G              + ++ A +V + 
Sbjct: 73  CRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFN----------SRNLKKAMRVMEI 122

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           +   G +PDV S++ ++  +S+A+Q   +    + M+ +G  P V TY+ ++  LCS G+
Sbjct: 123 LETYG-DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGK 181

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           +E A E++ E++++G  PS  TY    +        N A++L+ ++   GL  P++++YN
Sbjct: 182 LELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGL-RPDLYTYN 240

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            +I         D   +    +   G  PD+ SY +L+     K +W++  +   +M+  
Sbjct: 241 AIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLS 300

Query: 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
           G  P  VT   L     +   +R    + + + E+ +T  S    Y + P
Sbjct: 301 GCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDS----YSYDP 346



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 108/242 (44%), Gaps = 12/242 (4%)

Query: 40  LLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
           LLN  CR    + S  F +++ +          +G +PDV   + ++  +  +   + ++
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVS----------KGFKPDVVLCTKLIKGFFNSRNLKKAM 117

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
             +  ++  G  P V +Y++++       +I+ A ++   M   G  P   TYN      
Sbjct: 118 RVMEILETYGD-PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSL 176

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
             R     A ++  ++ +DG C P++ +Y ILI   +   R++   E+++++   GL PD
Sbjct: 177 CSRGKLELAFEVMDELLKDG-CKPSVITYTILIEATILEGRINEALELFDELVSRGLRPD 235

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
           L +Y  +I G+C++     A  +   +  +G  P  V++  L R  +         RL K
Sbjct: 236 LYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMK 295

Query: 280 KL 281
            +
Sbjct: 296 DM 297



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 14/145 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+++L   W   N+I   E  + EMI +G++P+ +TYN L++ +CR          +  +
Sbjct: 417 MFSAL---WSCGNKIKALE-MISEMIRKGIDPDEITYNSLISCLCR----------DGLV 462

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +  +M     +P V SF+IVL    +AH+    ++ L  M EKG  P   +Y  +
Sbjct: 463 DEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLL 522

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGV 145
           ++ +   G   +A EL   + R GV
Sbjct: 523 IEGIAYAGWRAEAMELANSLYRLGV 547


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 136/264 (51%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I G+ K   ++ A     EM++RG+ P+ VTY+ +++ +C+  ++  +E F + + 
Sbjct: 222 YSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMV 281

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N          +G+ P+  +++ +++ YS   Q + ++     M+   I P V T S ++
Sbjct: 282 N----------KGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM 331

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+I++A ++   M   G  P+  +Y      Y  +        L+  M  DG+ 
Sbjct: 332 GSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGI- 390

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+++++N+LI  +     +D    I+N+++  G+ PD+ +Y  +I  LC   K  +A +
Sbjct: 391 APDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 450

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F +MI++G+ P K  +  L +G 
Sbjct: 451 KFNQMIDQGVAPDKYAYHCLIQGF 474



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 123/260 (47%), Gaps = 11/260 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+   CK  +I  A      M  +G  PNV +Y ++LNG   +  L           +  
Sbjct: 330 LMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCL----------VDMT 379

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +FD M   GI PD+ +F++++  Y+       ++   N M++ G+ P V TY +V+  L
Sbjct: 380 DLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 439

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G+++DA E   +M+  GV P    Y+C  + +        A +L  ++  +G+ + +
Sbjct: 440 CRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHL-D 498

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           +  ++ +I     L R+   + I++     GL P    Y+ML+ G C   K ++A + F 
Sbjct: 499 IVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFD 558

Query: 245 EMIEKGLLPQKVTFETLYRG 264
            M+  G+ P  V + TL  G
Sbjct: 559 AMVSAGIEPNDVVYGTLVNG 578



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 127/264 (48%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+++  CK   +D AE FL +M+ +GV PN  TYN L+ G                 +
Sbjct: 257 YSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQW----------K 306

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +VF EMR   I PDV + S+++    +  + + + D  + M  KG  P V +Y+ ++
Sbjct: 307 EAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIML 366

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               + G + D  +L   M+ +G+ P   T+N   K Y      + AM ++ +M++ G+ 
Sbjct: 367 NGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGV- 425

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  +I     + +MD   E +N +   G+ PD  +Y  LI G C      +A +
Sbjct: 426 KPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKE 485

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
              E++  G+    V F ++   L
Sbjct: 486 LISEIMNNGMHLDIVFFSSIINNL 509



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 137/296 (46%), Gaps = 21/296 (7%)

Query: 5   LIYGWCKINRIDMA-ERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           L+ G+C+  R D A +  L    E G  P+V +Y++LL  +C +     ++   + +   
Sbjct: 152 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 211

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             V          PDV ++S V+  + +      + D    M ++GI P   TYSSVV  
Sbjct: 212 GAV--------CSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHA 263

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC    ++ AE  L +MV  GV P+  TYN     Y        A++++++M+   + +P
Sbjct: 264 LCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSI-LP 322

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++ + ++L+G      ++   R++++ +   G  P++ SYT++++G   K    +    F
Sbjct: 323 DVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLF 382

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
             M+  G+ P   TF  L +      M          LD+  I F +E +++  KP
Sbjct: 383 DLMLGDGIAPDIYTFNVLIKAYANCGM----------LDKAMIIF-NEMRDHGVKP 427



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 133/287 (46%), Gaps = 11/287 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++S+I   CK+ R+  A+      +  G+ P  V Y++L++G C         + EK +R
Sbjct: 502 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVG------KMEKALR 555

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               VFD M   GIEP+   +  +++ Y +  +    L     M +KGI P+   Y+ ++
Sbjct: 556 ----VFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIII 611

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR   A+    EM  +G+  +  TYN   +     +  + A+ L+++++   + 
Sbjct: 612 DGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVK 671

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N+ + N +I       R++  ++++  +  SGL P + +Y+++I  L ++   +EA  
Sbjct: 672 I-NIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAED 730

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
            F  M   G  P       + R L++ + +        K+DE + + 
Sbjct: 731 MFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSL 777



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 136/303 (44%), Gaps = 26/303 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C    +  A+  + E++  G+  ++V ++ ++N +C+             + 
Sbjct: 467 YHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR----------VM 516

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A+ +FD     G+ P    +S+++  Y    + + +L   + M   GI P    Y ++V
Sbjct: 517 DAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLV 576

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  GRI++   L  EM++ G+ PS   YN              A   + +M E G+ 
Sbjct: 577 NGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIA 636

Query: 182 VPNMHSYNILI-GMFMALNR-MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           + N  +YNI++ G+F   NR  D    ++ +++   +  ++ +   +I G+ + ++ +EA
Sbjct: 637 M-NKCTYNIVLRGLFK--NRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEA 693

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
              F  +   GL+P  VT+  +   LI           K+ L EE+    S  QN   +P
Sbjct: 694 KDLFASISRSGLVPCVVTYSIMITNLI-----------KEGLVEEAEDMFSSMQNAGCEP 742

Query: 300 YRR 302
             R
Sbjct: 743 DSR 745



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 105/216 (48%), Gaps = 2/216 (0%)

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           R + P   +++I++   +RAH+P+L+L     +   G+   +   + ++K  C   R ++
Sbjct: 105 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDE 164

Query: 133 AEE-LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG-LCVPNMHSYNI 190
           A + LL      G  P   +Y+   K    +  +  A  L R M E G +C P++ +Y+ 
Sbjct: 165 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYST 224

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           +I  F     ++   +++ ++   G+ PD  +Y+ ++H LC+ +   +A  +  +M+ KG
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKG 284

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +LP   T+  L  G   +   +   R+ K++   SI
Sbjct: 285 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSI 320



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 112/276 (40%), Gaps = 47/276 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+    + +R ++A  F G+++  G+  N++  N LL G C                
Sbjct: 114 YAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCE--------------- 158

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K  DE           +  I+LH       P+L           G  P V +YS ++
Sbjct: 159 --AKRTDE-----------ALDILLH-----RTPEL-----------GCVPDVFSYSILL 189

Query: 122 KCLCSCGRIEDAEELLGEMVRNG-VC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           K LC  G+   A++LL  M   G VC P    Y+     +    D N A  L+++M + G
Sbjct: 190 KSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRG 249

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  P+  +Y+ ++        MD        +   G+ P+  +Y  LI+G     +WKEA
Sbjct: 250 I-PPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEA 308

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
            + F EM    +LP  VT   L   L +   ++  R
Sbjct: 309 VRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEAR 344



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 114/257 (44%), Gaps = 11/257 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+ L+ G+C + +++ A R    M+  G+EPN V Y  L+NG C+             I
Sbjct: 536 VYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGR----------I 585

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                +F EM  +GI+P    ++I++     A +   +  K + M E GI     TY+ V
Sbjct: 586 DEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIV 645

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++ L      ++A  L  E+    V  +  T N         +    A  L+  +   GL
Sbjct: 646 LRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGL 705

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VP + +Y+I+I   +    ++   ++++ ++ +G  PD      ++  L +K +   A 
Sbjct: 706 -VPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAG 764

Query: 241 QYFVEMIEKGLLPQKVT 257
            Y  ++ E+    + +T
Sbjct: 765 AYLSKIDERNFSLEHLT 781


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 134/264 (50%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+ K   ++ A     EM++RG+ P++VTYN +++ +C+  ++  +E F + + 
Sbjct: 222 YNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMV 281

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N          + + P+  +++ +++ YS   Q + ++     M+   I P V T S ++
Sbjct: 282 N----------KRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM 331

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+I++A ++   M   G  P   +YN     Y  +        L+  M  DG+ 
Sbjct: 332 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGI- 390

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ +++N+LI  +     +D    I+N+++  G+ PD+ +Y  +I  LC   K  +A +
Sbjct: 391 APDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 450

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F +MI++G+ P K  +  L +G 
Sbjct: 451 KFNQMIDQGVAPDKYAYNCLIQGF 474



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 124/260 (47%), Gaps = 11/260 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+   CK  +I  A      M  +G  P+V +YN++LNG   +  L           +  
Sbjct: 330 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCL----------VDMT 379

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +FD M   GI PD  +F++++  Y+       ++   N M++ G+ P V TY +V+  L
Sbjct: 380 DLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 439

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G+++DA E   +M+  GV P    YNC  + +        A +L  ++  +G+ + +
Sbjct: 440 CRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHL-D 498

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           +  ++ +I     L R+   + I++     GL PD   Y+ML+ G C   K ++A + F 
Sbjct: 499 IVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFD 558

Query: 245 EMIEKGLLPQKVTFETLYRG 264
            M+  G+ P  V + TL  G
Sbjct: 559 AMVSAGIEPNVVVYCTLVNG 578



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 136/296 (45%), Gaps = 21/296 (7%)

Query: 5   LIYGWCKINRIDMA-ERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           L+ G+C+  R D A +  L    E G  P+V +Y++LL  +C +     ++   + +   
Sbjct: 152 LLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 211

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             V          P+V +++ V+  + +      + D    M ++GI P + TY+SVV  
Sbjct: 212 GAV--------CSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHA 263

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC    ++ AE  L +MV   V P+  TYN     Y        A++++++M+   + +P
Sbjct: 264 LCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSI-LP 322

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++ + ++L+G      ++   R++++ +   G  PD+ SY ++++G   K    +    F
Sbjct: 323 DVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLF 382

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
             M+  G+ P   TF  L +      M          LD+  I F +E +++  KP
Sbjct: 383 DLMLGDGIAPDFYTFNVLIKAYANCGM----------LDKAMIIF-NEMRDHGVKP 427



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 146/329 (44%), Gaps = 43/329 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I   C+I ++D A     +MI++GV P+   YN L+ G C   SL  ++     I 
Sbjct: 432 YRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIM 491

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           N                         A+ +FD     G+ PD   +S+++  Y    + +
Sbjct: 492 NNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKME 551

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   + M   GI P V  Y ++V   C  GRI++   L  EM++ G+ PS   Y+   
Sbjct: 552 KALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIII 611

Query: 157 KE-YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNR-MDMVREIWNDVKG 213
              ++  +     +K + +M E G+ + ++ +YNI++ G+F   NR  D    ++ +++ 
Sbjct: 612 DGLFQAGRTVPAKVK-FHEMTESGIAM-DICTYNIVLRGLFK--NRCFDEAIFLFKELRA 667

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT 273
             +  ++ +   +I G+ + ++ +EA   F  +    L+P  VT+  +   LI       
Sbjct: 668 MNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLI------- 720

Query: 274 WRRLKKKLDEESITFGSEFQNYHFKPYRR 302
               K+ L EE+    S  QN   +P  R
Sbjct: 721 ----KEGLVEEAEDMFSSMQNAGCEPNSR 745



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 104/216 (48%), Gaps = 2/216 (0%)

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           R + P   +++I++   +RAH+P+L+L     +   G+   +   + +++  C   R ++
Sbjct: 105 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDE 164

Query: 133 AEE-LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG-LCVPNMHSYNI 190
           A + LL      G  P   +Y+   K    +  +  A  L R M E G +C PN+ +YN 
Sbjct: 165 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNT 224

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           +I  F     ++   +++ ++   G+ PDL +Y  ++H LC+ +   +A  +  +M+ K 
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 284

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +LP   T+  L  G   +   +   R+ K++   SI
Sbjct: 285 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSI 320



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 113/276 (40%), Gaps = 47/276 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+    + +R ++A  F G+++  G+  N++  N LL G C                
Sbjct: 114 YAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCE--------------- 158

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K  DE           +  I+LH       P+L           G  P V +YS ++
Sbjct: 159 --AKRTDE-----------ALDILLH-----RTPEL-----------GCVPDVFSYSILL 189

Query: 122 KCLCSCGRIEDAEELLGEMVRNG-VC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           K LC  G+   A++LL  M   G VC P+   YN     +    D N A  L+++M + G
Sbjct: 190 KSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRG 249

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  P++ +YN ++        MD        +    + P+  +Y  LI+G     +WKEA
Sbjct: 250 I-PPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEA 308

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
            + F EM    +LP  VT   L   L +   ++  R
Sbjct: 309 VRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEAR 344



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 117/257 (45%), Gaps = 11/257 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+ L+ G+C + +++ A R    M+  G+EPNVV Y  L+NG C+             I
Sbjct: 536 VYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGR----------I 585

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                +F EM  RGI+P    +SI++    +A +   +  K + M E GI   + TY+ V
Sbjct: 586 DEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIV 645

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++ L      ++A  L  E+    V  +  T N         +    A  L+  +    L
Sbjct: 646 LRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRL 705

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VP++ +Y+I+I   +    ++   ++++ ++ +G  P+      ++  L +K +   A 
Sbjct: 706 -VPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAG 764

Query: 241 QYFVEMIEKGLLPQKVT 257
            Y  ++ E+    + +T
Sbjct: 765 AYLSKIDERNFSLEHLT 781


>gi|224117122|ref|XP_002317482.1| predicted protein [Populus trichocarpa]
 gi|222860547|gb|EEE98094.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 132/255 (51%), Gaps = 16/255 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++ GWC +  +  A+RF  ++I    +P+V TY   +  +  +  L            A 
Sbjct: 147 VLNGWCVLGNVREAKRFWKDIIASKCKPDVFTYGTFIKALTNKGKLG----------TAM 196

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           K+++ M     +PDV   + V+       +   +L     MKE+G  P VATY+S++K +
Sbjct: 197 KLYEAMWKMQCKPDVVICNCVIDALCFKKRVPEALAVFEGMKERGCIPNVATYNSLIKHM 256

Query: 125 CSCGRIEDAEELLGEMV-RNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
           C  GR+E   ELL EM  + G C P   T+N   K  +  ++  G ++   +MK +G C 
Sbjct: 257 CKIGRMEKVYELLDEMQEKKGSCMPDEITFNYLLKSLKKPEEVAGVLE---RMKING-CK 312

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
            N  + N+L+ +    +  + VR  W +++ +GLG D  SYT++IH L +K + ++A +Y
Sbjct: 313 MNNDTCNLLLKLHADWDSEEKVRYTWEEMEKNGLGLDRRSYTIMIHWLYDKGRVEDALRY 372

Query: 243 FVEMIEKGLLPQKVT 257
           F EM  KG++P+  T
Sbjct: 373 FGEMENKGMVPEPRT 387



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 87/201 (43%), Gaps = 4/201 (1%)

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           V DEM  R    D  ++ ++++ Y+ AH  + ++   N  +E G+   + ++  ++  LC
Sbjct: 59  VLDEMSKREGFVDEDTYRVLVNRYAGAHMVEEAIGAFNKRRELGLELDLVSFQKLLMYLC 118

Query: 126 SCGRIEDAEELLGEMVRN-GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
               ++ AE LL       GV    +T N     +    +   A + ++ +     C P+
Sbjct: 119 RYKHVDVAETLLHSKGHEFGV--DIKTMNIVLNGWCVLGNVREAKRFWKDIIASK-CKPD 175

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y   I       ++    +++  +      PD+     +I  LC K++  EA   F 
Sbjct: 176 VFTYGTFIKALTNKGKLGTAMKLYEAMWKMQCKPDVVICNCVIDALCFKKRVPEALAVFE 235

Query: 245 EMIEKGLLPQKVTFETLYRGL 265
            M E+G +P   T+ +L + +
Sbjct: 236 GMKERGCIPNVATYNSLIKHM 256



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 15/152 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIER--GVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           Y SLI   CKI R++     L EM E+     P+ +T+N LL  + +     P E     
Sbjct: 249 YNSLIKHMCKIGRMEKVYELLDEMQEKKGSCMPDEITFNYLLKSLKK-----PEE----- 298

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
                 V + M++ G + +  + +++L +++     +        M++ G+     +Y+ 
Sbjct: 299 ---VAGVLERMKINGCKMNNDTCNLLLKLHADWDSEEKVRYTWEEMEKNGLGLDRRSYTI 355

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
           ++  L   GR+EDA    GEM   G+ P   T
Sbjct: 356 MIHWLYDKGRVEDALRYFGEMENKGMVPEPRT 387



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 2/172 (1%)

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
           KE  I  +   Y+ ++  L    R E+   +L EM +       +TY      Y G    
Sbjct: 29  KEGTISLSSCVYNEILDILGRMRRFEELTLVLDEMSKREGFVDEDTYRVLVNRYAGAHMV 88

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
             A+  + + +E GL + ++ S+  L+        +D+   + +  KG   G D+ +  +
Sbjct: 89  EEAIGAFNKRRELGLEL-DLVSFQKLLMYLCRYKHVDVAETLLHS-KGHEFGVDIKTMNI 146

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           +++G C     +EA +++ ++I     P   T+ T  + L     L T  +L
Sbjct: 147 VLNGWCVLGNVREAKRFWKDIIASKCKPDVFTYGTFIKALTNKGKLGTAMKL 198


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 139/292 (47%), Gaps = 30/292 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER------ 55
           Y  +I G+C   R   A+R L +MIER + P+V+T+N L++   +   L  +E+      
Sbjct: 118 YNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEML 177

Query: 56  ----FEKTIR---------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
               F  T+                +A+ +FD M      PDV +F+ ++ VY RA +  
Sbjct: 178 HRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRAKRVD 233

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
             +  L  +  +G+     TY++++   C    +  A++L  EM+ +GVCP   T N   
Sbjct: 234 EGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILL 293

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             +   +    A++L+  ++   + +  + +YNI+I      +++D   +++  +   G+
Sbjct: 294 YGFCENEKLEEALELFEVIQMSKIDLDTV-AYNIIIHGMCKGSKVDEAWDLFCSLPIHGV 352

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            PD+ +Y ++I G C K    +A   F +M + G  P   T+ TL RG +++
Sbjct: 353 EPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKA 404



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 140/308 (45%), Gaps = 30/308 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF---- 56
           +Y+++I   CK      A+    EM+E+G+ PNV TYN +++G C       ++R     
Sbjct: 82  IYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM 141

Query: 57  ---------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                E  +  AEK+ DEM  R I PD  +++ +++ + + ++ 
Sbjct: 142 IEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNR- 200

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
               D    M +    P V T+++++   C   R+++  +LL E+ R G+  +  TYN  
Sbjct: 201 ---FDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTL 257

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +    + N A  L+++M   G+C P+  + NIL+  F    +++   E++  ++ S 
Sbjct: 258 IHGFCEVDNLNAAQDLFQEMISHGVC-PDTITCNILLYGFCENEKLEEALELFEVIQMSK 316

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           +  D  +Y ++IHG+C+  K  EA   F  +   G+ P   T+  +  G      +    
Sbjct: 317 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDAN 376

Query: 276 RLKKKLDE 283
            L  K+ +
Sbjct: 377 VLFHKMKD 384



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 134/322 (41%), Gaps = 45/322 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G C   R+  A   + +M+ +G+  +VVTY  ++NG+C+              +
Sbjct: 13  FNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD----------TK 62

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  +M    I+PDV  +S ++    +      +    + M EKGI P V TY+ ++
Sbjct: 63  SALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMI 122

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE---- 177
              CS GR  DA+ LL +M+   + P   T+N              A KL  +M      
Sbjct: 123 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 182

Query: 178 --------------------------DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
                                     D +  P++ ++N +I ++    R+D   ++  ++
Sbjct: 183 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 242

Query: 212 KGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
              GL  +  +Y  LIHG CE      A   F EMI  G+ P  +T   L  G  +++ L
Sbjct: 243 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 302

Query: 272 RTWRRL-----KKKLDEESITF 288
                L       K+D +++ +
Sbjct: 303 EEALELFEVIQMSKIDLDTVAY 324



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 129/291 (44%), Gaps = 48/291 (16%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M+E G+ P V+T+N L+NG+C           E  +  A  + ++M  +G+  DV ++  
Sbjct: 1   MVEIGLTPVVITFNTLINGLC----------LEGRVLEAAALVNKMVGKGLHIDVVTYGT 50

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           +++   +    + +L+ L+ M+E  I P V  YS+++  LC  G   DA+ L  EM+  G
Sbjct: 51  IVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKG 110

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE--------------------------D 178
           + P+  TYNC    +      + A +L R M E                          +
Sbjct: 111 IAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAE 170

Query: 179 GLC--------VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230
            LC         P+  +YN +I  F   NR D  + ++ D+  S   PD+ ++  +I   
Sbjct: 171 KLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMF-DLMAS---PDVVTFNTIIDVY 226

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           C  ++  E  Q   E+  +GL+    T+ TL  G  + D L   + L +++
Sbjct: 227 CRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEM 277



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 92/179 (51%), Gaps = 10/179 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G+C+++ ++ A+    EMI  GV P+ +T N+LL G C       +E+ E+   
Sbjct: 254 YNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCE------NEKLEE--- 304

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F+ +++  I+ D  +++I++H   +  +   + D    +   G+ P V TY+ ++
Sbjct: 305 -ALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMI 363

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
              C    I DA  L  +M  NG  P   TYN   +      + + +++L  +M+ +G 
Sbjct: 364 SGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGF 422



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 41/191 (21%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M E G+ P V T+++++  LC  GR+ +A  L+ +MV  G+     TY           D
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 60

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
              A+ L  +M+E                                    + + PD+  Y+
Sbjct: 61  TKSALNLLSKMEE------------------------------------THIKPDVVIYS 84

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRR-LKK 279
            +I  LC+     +A   F EM+EKG+ P   T+  +  G       SD  R  R  +++
Sbjct: 85  AIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIER 144

Query: 280 KLDEESITFGS 290
           +++ + +TF +
Sbjct: 145 EINPDVLTFNA 155


>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 138/286 (48%), Gaps = 31/286 (10%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           SLIYG+C + +   A   L EM+ + + P+V T+N+L++ +C+          E  I+ A
Sbjct: 251 SLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDALCK----------EGKIKEA 300

Query: 64  EKVFDEMRVRGIEPDVTSFSIVL-------------HVYS-------RAHQPQLSLDKLN 103
           +     M   G+ PDV ++S ++             HVYS       +      +L    
Sbjct: 301 KSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSIVINGFCKIKMVDKALSLFY 360

Query: 104 FMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163
            M+ + I P   TY+S++  LC  GRI  A EL+ EM  +G      TYN          
Sbjct: 361 EMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADIITYNSLIDALCKNH 420

Query: 164 DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSY 223
             + A+ L +++K+ G+ + +M++YNILI       R+   + I+ D+   G    + +Y
Sbjct: 421 HVDKAIALVKKIKDQGIQL-DMYTYNILIDGLCKQGRLKDAQVIFQDLLIKGYNLTVWTY 479

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           T++I+GLC +    EA     +M + G +P  VT ET+ R L ++D
Sbjct: 480 TIMINGLCLEGLLNEAETLLSKMEDNGCVPDAVTCETIIRALFEND 525



 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 133/285 (46%), Gaps = 26/285 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CKI     A + L ++  + V  +VV Y+ +++G+C+          +K + 
Sbjct: 179 YGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCK----------DKLVN 228

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A +++ EM  + I P V + + +++ Y    Q + +   L  M  K I P V T++ +V
Sbjct: 229 DAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILV 288

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+I++A+  +  M++ GV P   TY+     Y    + N A             
Sbjct: 289 DALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKA------------- 335

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
               H Y+I+I  F  +  +D    ++ +++   + PD  +Y  LI GLC+  +   A +
Sbjct: 336 ---KHVYSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWE 392

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              EM + G     +T+ +L   L ++  +     L KK+ ++ I
Sbjct: 393 LVDEMRDSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGI 437



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 133/304 (43%), Gaps = 33/304 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY+++I G CK   ++ A     EMI + + P VVT N L+ G C               
Sbjct: 213 MYSTIIDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQF---------- 262

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  +  EM ++ I PDV +F+I++    +  + + +   +  M ++G+ P V TYSS+
Sbjct: 263 KEAFGLLREMVLKNINPDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSL 322

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVC---------------------PSAETYNCFFKEY 159
           +   C    +  A+ +   +V NG C                     P   TYN      
Sbjct: 323 MDGYCLVNEVNKAKHVY-SIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGL 381

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
                 + A +L  +M++ G    ++ +YN LI      + +D    +   +K  G+  D
Sbjct: 382 CKSGRISYAWELVDEMRDSGQ-PADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLD 440

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
           + +Y +LI GLC++ + K+A   F +++ KG      T+  +  GL    +L     L  
Sbjct: 441 MYTYNILIDGLCKQGRLKDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLS 500

Query: 280 KLDE 283
           K+++
Sbjct: 501 KMED 504



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/284 (21%), Positives = 117/284 (41%), Gaps = 31/284 (10%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C + ++  A     ++++ G  PN +T   L+ G C              ++ A 
Sbjct: 112 LINCYCHLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFC----------LNHKVKEAL 161

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
              D +   G   +  S+  +++   +  + + +L  L  ++ K +   V  YS+++  L
Sbjct: 162 HFHDHVLALGFHFNQVSYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGL 221

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C    + DA EL  EM+   + P+  T N     Y        A  L R+M    +  P+
Sbjct: 222 CKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNIN-PD 280

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML------------------ 226
           ++++NIL+       ++   +     +   G+ PD+ +Y+ L                  
Sbjct: 281 VYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYS 340

Query: 227 --IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
             I+G C+ +   +A   F EM  + + P  VT+ +L  GL +S
Sbjct: 341 IVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKS 384



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 90/215 (41%), Gaps = 45/215 (20%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+ +I G+CKI  +D A     EM  R + P+ VTYN L++G+C+             I
Sbjct: 338 VYSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGR----------I 387

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A ++ DEMR  G   D+ +++ ++    + H    ++  +  +K++GI   + TY+ +
Sbjct: 388 SYAWELVDEMRDSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNIL 447

Query: 121 VKCLCSCGRIEDA-----------------------------------EELLGEMVRNGV 145
           +  LC  GR++DA                                   E LL +M  NG 
Sbjct: 448 IDGLCKQGRLKDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGC 507

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
            P A T     +          A KL R+M   GL
Sbjct: 508 VPDAVTCETIIRALFENDKNERAEKLLREMIARGL 542



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 80/198 (40%), Gaps = 1/198 (0%)

Query: 67  FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS 126
           F  M +    P V  F  +L    +       +     ++  GI P + + S ++ C C 
Sbjct: 59  FHRMLLLNPAPSVIEFGKILSSLVKLKHYPTVISLFYQLEFNGIKPNIVSLSILINCYCH 118

Query: 127 CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH 186
            G++  A  +  ++++ G  P+  T     K +        A+  +  +   G    N  
Sbjct: 119 LGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALGFHF-NQV 177

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
           SY  LI     +       ++   ++G  +  D+  Y+ +I GLC+ +   +A + + EM
Sbjct: 178 SYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEM 237

Query: 247 IEKGLLPQKVTFETLYRG 264
           I K + P  VT  +L  G
Sbjct: 238 ITKRISPTVVTLNSLIYG 255



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/235 (19%), Positives = 104/235 (44%), Gaps = 6/235 (2%)

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           +F ++   GI+P++ S SI+++ Y    Q + +      + + G  P   T +++VK  C
Sbjct: 93  LFYQLEFNGIKPNIVSLSILINCYCHLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFC 152

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
              ++++A      ++  G   +  +Y           +   A+++ RQ+ E  L   ++
Sbjct: 153 LNHKVKEALHFHDHVLALGFHFNQVSYGTLINGLCKIGETRAALQMLRQI-EGKLVSTDV 211

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
             Y+ +I        ++   E+++++    + P + +   LI+G C   ++KEA     E
Sbjct: 212 VMYSTIIDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLRE 271

Query: 246 MIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGSEFQNY 295
           M+ K + P   TF  L   L +   ++  +      +K+ +  + +T+ S    Y
Sbjct: 272 MVLKNINPDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGY 326



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 69/159 (43%), Gaps = 1/159 (0%)

Query: 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188
            ++D       M+     PS   +          K     + L+ Q++ +G+  PN+ S 
Sbjct: 51  HVDDLVSSFHRMLLLNPAPSVIEFGKILSSLVKLKHYPTVISLFYQLEFNGI-KPNIVSL 109

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           +ILI  +  L +M     I+  +   G  P+  + T L+ G C   K KEA  +   ++ 
Sbjct: 110 SILINCYCHLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLA 169

Query: 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            G    +V++ TL  GL +    R   ++ ++++ + ++
Sbjct: 170 LGFHFNQVSYGTLINGLCKIGETRAALQMLRQIEGKLVS 208


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 134/264 (50%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+ K   ++ A     EM++RG+ P++VTYN +++ +C+  ++  +E F + + 
Sbjct: 235 YNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMV 294

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N          + + P+  +++ +++ YS   Q + ++     M+   I P V T S ++
Sbjct: 295 N----------KRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM 344

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+I++A ++   M   G  P   +YN     Y  +        L+  M  DG+ 
Sbjct: 345 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGI- 403

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+ +++N+LI  +     +D    I+N+++  G+ PD+ +Y  +I  LC   K  +A +
Sbjct: 404 APDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 463

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F +MI++G+ P K  +  L +G 
Sbjct: 464 KFNQMIDQGVAPDKYAYNCLIQGF 487



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 124/260 (47%), Gaps = 11/260 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+   CK  +I  A      M  +G  P+V +YN++LNG   +  L           +  
Sbjct: 343 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCL----------VDMT 392

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +FD M   GI PD  +F++++  Y+       ++   N M++ G+ P V TY +V+  L
Sbjct: 393 DLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 452

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G+++DA E   +M+  GV P    YNC  + +        A +L  ++  +G+ + +
Sbjct: 453 CRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHL-D 511

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           +  ++ +I     L R+   + I++     GL PD   Y+ML+ G C   K ++A + F 
Sbjct: 512 IVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFD 571

Query: 245 EMIEKGLLPQKVTFETLYRG 264
            M+  G+ P  V + TL  G
Sbjct: 572 AMVSAGIEPNVVVYCTLVNG 591



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 146/329 (44%), Gaps = 43/329 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I   C+I ++D A     +MI++GV P+   YN L+ G C   SL  ++     I 
Sbjct: 445 YRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIM 504

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           N                         A+ +FD     G+ PD   +S+++  Y    + +
Sbjct: 505 NNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKME 564

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   + M   GI P V  Y ++V   C  GRI++   L  EM++ G+ PS   Y+   
Sbjct: 565 KALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIII 624

Query: 157 KE-YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNR-MDMVREIWNDVKG 213
              ++  +     MK + +M E G+ + ++ +YNI++ G+F   NR  D    ++ +++ 
Sbjct: 625 DGLFQAGRTVPAKMK-FHEMTESGIAM-DICTYNIVLRGLFK--NRCFDEAIFLFKELRA 680

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT 273
             +  ++ +   +I G+ + ++ +EA   F  +    L+P  VT+  +   LI       
Sbjct: 681 MNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLI------- 733

Query: 274 WRRLKKKLDEESITFGSEFQNYHFKPYRR 302
               K+ L EE+    S  QN   +P  R
Sbjct: 734 ----KEGLVEEAEDMFSSMQNAGCEPNSR 758



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 136/296 (45%), Gaps = 21/296 (7%)

Query: 5   LIYGWCKINRIDMA-ERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           L+ G+C+  R D A +  L    E G  P+V +Y++LL  +C +     ++   + +   
Sbjct: 165 LLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 224

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             V          P+V +++ V+  + +      + D    M ++GI P + TY+SVV  
Sbjct: 225 GAV--------CSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHA 276

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC    ++ AE  L +MV   V P+  TYN     Y        A++++++M+   + +P
Sbjct: 277 LCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSI-LP 335

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++ + ++L+G      ++   R++++ +   G  PD+ SY ++++G   K    +    F
Sbjct: 336 DVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLF 395

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
             M+  G+ P   TF  L +      M          LD+  I F +E +++  KP
Sbjct: 396 DLMLGDGIAPDFYTFNVLIKAYANCGM----------LDKAMIIF-NEMRDHGVKP 440



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 104/216 (48%), Gaps = 2/216 (0%)

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           R + P   +++I++   +RAH+P+L+L     +   G+   +   + +++  C   R ++
Sbjct: 118 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDE 177

Query: 133 AEE-LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG-LCVPNMHSYNI 190
           A + LL      G  P   +Y+   K    +  +  A  L R M E G +C PN+ +YN 
Sbjct: 178 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNT 237

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           +I  F     ++   +++ ++   G+ PDL +Y  ++H LC+ +   +A  +  +M+ K 
Sbjct: 238 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 297

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +LP   T+  L  G   +   +   R+ K++   SI
Sbjct: 298 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSI 333



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 113/276 (40%), Gaps = 47/276 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+    + +R ++A  F G+++  G+  N++  N LL G C                
Sbjct: 127 YAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCE--------------- 171

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              K  DE           +  I+LH       P+L           G  P V +YS ++
Sbjct: 172 --AKRTDE-----------ALDILLH-----RTPEL-----------GCVPDVFSYSILL 202

Query: 122 KCLCSCGRIEDAEELLGEMVRNG-VC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           K LC  G+   A++LL  M   G VC P+   YN     +    D N A  L+++M + G
Sbjct: 203 KSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRG 262

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  P++ +YN ++        MD        +    + P+  +Y  LI+G     +WKEA
Sbjct: 263 I-PPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEA 321

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
            + F EM    +LP  VT   L   L +   ++  R
Sbjct: 322 VRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEAR 357



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 117/257 (45%), Gaps = 11/257 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+ L+ G+C + +++ A R    M+  G+EPNVV Y  L+NG C+             I
Sbjct: 549 VYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGR----------I 598

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                +F EM  RGI+P    +SI++    +A +   +  K + M E GI   + TY+ V
Sbjct: 599 DEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIV 658

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++ L      ++A  L  E+    V  +  T N         +    A  L+  +    L
Sbjct: 659 LRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRL 718

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VPN+ +Y+I+I   +    ++   ++++ ++ +G  P+      ++  L +K +   A 
Sbjct: 719 -VPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAG 777

Query: 241 QYFVEMIEKGLLPQKVT 257
            Y  ++ E+    + +T
Sbjct: 778 AYLSKIDERNFSLEHLT 794


>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
          Length = 698

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 143/287 (49%), Gaps = 17/287 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C+   I      LGEM  +G+ P VVTY  +++ + R+  L           
Sbjct: 119 YNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDL----------T 168

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             E +  EMR RG+ P+V  ++ V++   +      + D LN M +    P V T+++++
Sbjct: 169 KVESLLGEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMI 228

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G + +A +LL E +R G+ P+  +Y      +  R +A  A  L  +M   G  
Sbjct: 229 AGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGH- 287

Query: 182 VPNMHSYNILI-GMFMA--LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
            P+M +   LI G+ ++  +N   +VRE   + +   + PD + Y +LI GLC+K+    
Sbjct: 288 TPDMITLGALIHGLVVSGQVNDALIVREKMAERQ---VMPDANIYNVLISGLCKKRMLSA 344

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           A     EM+E+ + P K  + TL  G ++SD L   R++ + ++E++
Sbjct: 345 AKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKA 391



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 123/282 (43%), Gaps = 11/282 (3%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++ G C   R++     +      G  P  V YNVL++G CRR            I    
Sbjct: 87  MVRGLCLEGRVEEGRGLIEARWGEGCVPGAVFYNVLIDGYCRRGD----------IGRGL 136

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +  EM  +GI P V ++  ++H   R          L  M+ +G+ P V  Y++V+  L
Sbjct: 137 LLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINAL 196

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C C     A ++L +MV++   P   T+N     +    D   A+KL R+    GL  PN
Sbjct: 197 CKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGL-EPN 255

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
             SY  LI  F       +  ++  ++ G G  PD+ +   LIHGL    +  +A     
Sbjct: 256 QLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVRE 315

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +M E+ ++P    +  L  GL +  ML   + L +++ E+ +
Sbjct: 316 KMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKV 357



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 127/277 (45%), Gaps = 12/277 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I   CK      A   L +M++    P+VVT+N ++ G CR          E  +
Sbjct: 188 IYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCR----------EGDV 237

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R A K+  E   RG+EP+  S++ ++H +    +  ++ D L  M  +G  P + T  ++
Sbjct: 238 REALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGAL 297

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L   G++ DA  +  +M    V P A  YN        ++  + A  L  +M E  +
Sbjct: 298 IHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKV 357

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P+   Y  LI  F+  +++   R+I+  ++     PD+ +Y ++I G C+    KEA 
Sbjct: 358 -QPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKAC-PDIVAYNVMIKGYCKFGMMKEAV 415

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
                M + G +P + T+ TL  G  +   +    RL
Sbjct: 416 TCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISASLRL 452



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 136/284 (47%), Gaps = 14/284 (4%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +LI+G     +++ A     +M ER V P+   YNVL++G+C++          + +  A
Sbjct: 296 ALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKK----------RMLSAA 345

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
           + + +EM  + ++PD   ++ ++  + R+ +   +     FM+EK  CP +  Y+ ++K 
Sbjct: 346 KNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKA-CPDIVAYNVMIKG 404

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C  G +++A   +  M + G  P   TY      Y  + D + +++L   M +   C P
Sbjct: 405 YCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISASLRLLCDMMKR-RCKP 463

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N+ +Y  LI  +  +       +++  ++  GL P++  YT+LI  L +K K  +A  YF
Sbjct: 464 NIFTYASLICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGSLFKKDKVIQAAAYF 523

Query: 244 VEMIEKGLLPQKVTFETLYRGLI--QSDMLRTWRRLKKKLDEES 285
             M+     P   T   L  GL+  +  M+ + R   K+  E+S
Sbjct: 524 EHMLLNHCPPNDATVHYLVNGLVNCRHGMVNSNRSDTKQAHEKS 567



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 118/277 (42%), Gaps = 11/277 (3%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A    GEM+ R    +  +  V++ G+C           E  +     + +     G  P
Sbjct: 65  ARGLYGEMLVREGGADDYSTCVMVRGLC----------LEGRVEEGRGLIEARWGEGCVP 114

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
               +++++  Y R       L  L  M+ KGI PTV TY +++  L   G +   E LL
Sbjct: 115 GAVFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTKVESLL 174

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
           GEM   G+ P+ + YN         + A+ A  +  QM +     P++ ++N +I  F  
Sbjct: 175 GEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRF-NPDVVTFNTMIAGFCR 233

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
              +    ++  +    GL P+  SYT LIHG C + +   A    VEM+ +G  P  +T
Sbjct: 234 EGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMIT 293

Query: 258 FETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
              L  GL+ S  +     +++K+ E  +   +   N
Sbjct: 294 LGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYN 330



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 130/325 (40%), Gaps = 62/325 (19%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI G CK   +  A+  L EM+E+ V+P+   Y  L++G  R   L          
Sbjct: 328 IYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLS--------- 378

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A K+F+ M  +   PD+ ++++++  Y +    + ++  ++ M++ G  P   TY+++
Sbjct: 379 -DARKIFEFMEEKAC-PDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTL 436

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V      G I  +  LL +M++    P+  TY      Y    D   A  L+ +M+ +GL
Sbjct: 437 VDGYAKKGDISASLRLLCDMMKRRCKPNIFTYASLICGYCNIGDTYSAEDLFAKMQSEGL 496

Query: 181 CVPNMHSYNILIGMF---------------MALN-------------------RMDMVRE 206
             PN+  Y +LIG                 M LN                   R  MV  
Sbjct: 497 -FPNVVHYTVLIGSLFKKDKVIQAAAYFEHMLLNHCPPNDATVHYLVNGLVNCRHGMVNS 555

Query: 207 IWNDVK----------------GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
             +D K                  GL P + +Y  +I  LC      +A     +M  KG
Sbjct: 556 NRSDTKQAHEKSALLDVFRGLISDGLDPRISAYNAIIFSLCRHNMLGKAMDLKDKMSNKG 615

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWR 275
            LP  +TF +L  G   +     WR
Sbjct: 616 CLPDPITFLSLLYGFSSAGESGKWR 640



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 103/241 (42%), Gaps = 34/241 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G+ K   I  + R L +M++R  +PN+ TY  L+ G C     +          
Sbjct: 433 YTTLVDGYAKKGDISASLRLLCDMMKRRCKPNIFTYASLICGYCNIGDTY---------- 482

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +AE +F +M+  G+ P+V  +++++    +  +   +      M      P  AT   +V
Sbjct: 483 SAEDLFAKMQSEGLFPNVVHYTVLIGSLFKKDKVIQAAAYFEHMLLNHCPPNDATVHYLV 542

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L +C              R+G+  S  +      + +   + +  + ++R +  DGL 
Sbjct: 543 NGLVNC--------------RHGMVNSNRS------DTKQAHEKSALLDVFRGLISDGL- 581

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC---EKQKWKE 238
            P + +YN +I      N +    ++ + +   G  PD  ++  L++G     E  KW+ 
Sbjct: 582 DPRISAYNAIIFSLCRHNMLGKAMDLKDKMSNKGCLPDPITFLSLLYGFSSAGESGKWRS 641

Query: 239 A 239
           A
Sbjct: 642 A 642


>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 836

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 135/300 (45%), Gaps = 51/300 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+ G   + +ID   R L E  E G  PNV TY +LL G C+      ++R E    
Sbjct: 574 YNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCK------ADRIE---- 623

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K F  +    +E     ++I++  Y R      +    + MK +GI PT ATYSS++
Sbjct: 624 DAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLI 683

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             +C  GR+++A+E+                                   + +M+ +GL 
Sbjct: 684 HGMCCIGRVDEAKEI-----------------------------------FEEMRNEGL- 707

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+  Y  LIG    L +MD+V  I  ++  +G+ P+  +YT++I G C+    KEA +
Sbjct: 708 LPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARE 767

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD-----EESITFGSEFQNYH 296
              EMI  G+ P  VT+  L +G  +   L    +   K +     EE IT+ +     H
Sbjct: 768 LLNEMIRNGIAPDTVTYNALQKGYCKERELTVTLQSDHKSNIGLPLEEEITYNTLIHKLH 827



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 143/297 (48%), Gaps = 14/297 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G  K  R + A RF   M+   V P+VVTY VL++G+ +       E FE+   
Sbjct: 293 YNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKL------EMFEE--- 343

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V  EM   G  P+   F+ ++  Y R      +L   + M  KG+ P   T+++++
Sbjct: 344 -ANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLL 402

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C   ++E AE++L  ++ +G+  + +  +        R     A+K+  ++    + 
Sbjct: 403 QGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGFVSALKIVTKLLSGNIR 462

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKG-SGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           V +     +++G+       + + E+W  +    GL  +  +   L+HGLCE+   +E  
Sbjct: 463 VSDSLLTPLVVGLCKCEGHSEAI-ELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVF 521

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
           +   +M+EKGLL  ++++ TL  G  +   +    +LK+++ ++   F  +   Y+F
Sbjct: 522 EVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQE--FQPDTYTYNF 576



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 13/193 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI  +C+I  +  A +    M  RG+ P   TY+ L++G+C              +
Sbjct: 643 VYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGR----------V 692

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+++F+EMR  G+ P+V  ++ ++  + +  Q  +    L  M   GI P   TY+ +
Sbjct: 693 DEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIM 752

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED-G 179
           +   C  G +++A ELL EM+RNG+ P   TYN   K Y   K+    + L    K + G
Sbjct: 753 IDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNALQKGY--CKERELTVTLQSDHKSNIG 810

Query: 180 LCVPNMHSYNILI 192
           L +    +YN LI
Sbjct: 811 LPLEEEITYNTLI 823



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 47/245 (19%)

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
           +RGV P + T N+LL+ + +   LH S           +VFD +  +G+ PDV +F+  +
Sbjct: 214 KRGVFPCLKTCNLLLSSLVKANELHKS----------YEVFD-LACQGVAPDVFTFTTAI 262

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
           + + +  +   ++D    M+  G+ P V TY++V+  L   GR E+A      MVR+ V 
Sbjct: 263 NAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVN 322

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           PS  T                                    Y +LI   M L   +   E
Sbjct: 323 PSVVT------------------------------------YGVLISGLMKLEMFEEANE 346

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +  ++   G  P+   +  LI G C K    EA +   EM  KG+ P  VTF TL +G  
Sbjct: 347 VLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFC 406

Query: 267 QSDML 271
           +S+ +
Sbjct: 407 RSNQM 411



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 134/337 (39%), Gaps = 47/337 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G  K+   + A   L EM   G  PN V +N L++G CR+  +           
Sbjct: 328 YGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMG---------- 377

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG------ICPTV- 114
            A +V DEM ++G++P+  +F+ +L  + R++Q + +   L ++   G      +C  V 
Sbjct: 378 EALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVI 437

Query: 115 ----------------------------ATYSSVVKCLCSCGRIEDAEELLGEMVR-NGV 145
                                       +  + +V  LC C    +A EL  ++    G+
Sbjct: 438 HRLMERSGFVSALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGL 497

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
             +  T N        R +     ++ +QM E GL +  + SYN LI       +++   
Sbjct: 498 AANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRI-SYNTLIFGCCKWGKIEEAF 556

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           ++  ++      PD  +Y  L+ GL +  K  +  +   E  E G +P   T+  L  G 
Sbjct: 557 KLKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGY 616

Query: 266 IQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR 302
            ++D +    +  K LD E +   S   N     Y R
Sbjct: 617 CKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCR 653



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 6/112 (5%)

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P + + N+L+   +  N +    E++ D+   G+ PD+ ++T  I+  C+  +  +A   
Sbjct: 219 PCLKTCNLLLSSLVKANELHKSYEVF-DLACQGVAPDVFTFTTAINAFCKGGRVGDAVDL 277

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK-----KKLDEESITFG 289
           F +M   G+ P  VT+  +  GL +S       R K      K++   +T+G
Sbjct: 278 FCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYG 329


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 142/300 (47%), Gaps = 14/300 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+LI G C   +I  A +   +M   G +P+V+TY  L+NG+C+          ++ + 
Sbjct: 83  FTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCK----------DRQLT 132

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F +M  +GI P+  ++S ++H        + ++     M  + I P   T++++V
Sbjct: 133 EALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLV 192

Query: 122 KCLCSCGRIEDAEELLG---EMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
             LC  G I+  ++ +G   EM + G+ P   TYN              A+ L+ +M   
Sbjct: 193 DALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVY 252

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G  +P++ +Y IL       +R+     +   ++G+ L PD+  Y++++ G+C   + + 
Sbjct: 253 G-QIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEA 311

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
           A   F ++  KGL P   T+  +  GL Q  +L    +L  ++DE  I   S F    FK
Sbjct: 312 ARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENDIESYSTFSRNAFK 371



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 1/209 (0%)

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           P +  FS +L   +R       L     M   GI     T + ++   C   R+  A  +
Sbjct: 8   PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSV 67

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
           LG++++ G  PS  T+    +          A++L+ +M  +G   P++ +Y  LI    
Sbjct: 68  LGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGF-QPDVLTYGTLINGLC 126

Query: 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256
              ++     +++D+   G+ P+  +Y+ LIHGLC    WKEA + F  MI + ++P ++
Sbjct: 127 KDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQL 186

Query: 257 TFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           TF TL   L +  M++   +     +E S
Sbjct: 187 TFNTLVDALCKEGMIQIMDKAMGLFEEMS 215



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 108/244 (44%), Gaps = 14/244 (5%)

Query: 32  PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91
           P++V ++ LL  + R           K       ++ +M   GI  +  + +I+++ +  
Sbjct: 8   PSIVDFSKLLTSITRM----------KHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCH 57

Query: 92  AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151
            ++   +   L  + + G  P+ AT++++++ LC  G+I +A +L  +M   G  P   T
Sbjct: 58  LNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLT 117

Query: 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211
           Y          +    A+ L+  M   G+  PN  +Y+ LI     L        ++  +
Sbjct: 118 YGTLINGLCKDRQLTEALSLFSDMLAKGIS-PNNFTYSSLIHGLCILGHWKEAIRLFYAM 176

Query: 212 KGSGLGPDLDSYTMLIHGLCEK---QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
               + PD  ++  L+  LC++   Q   +A   F EM ++GL+P  VT+ TL  GL   
Sbjct: 177 IHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHV 236

Query: 269 DMLR 272
             LR
Sbjct: 237 GRLR 240



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 14/83 (16%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+ ++ G C+   ++ A     ++  +G+ P+V TY +++NG+C++  L          
Sbjct: 295 IYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLL---------- 344

Query: 61  RNAEKVFDEMRVRGIEPDVTSFS 83
             A K+F EM     E D+ S+S
Sbjct: 345 AEASKLFGEMD----ENDIESYS 363


>gi|125569053|gb|EAZ10568.1| hypothetical protein OsJ_00400 [Oryza sativa Japonica Group]
          Length = 514

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 130/256 (50%), Gaps = 14/256 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  ++ GWC    +  A+R   E+I   ++P++ TY   +N + +   L           
Sbjct: 235 WNIILNGWCVKGSLADAKRVWNEIIASKLKPDLFTYGTFINSLTKSGKLS---------- 284

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F  M  +GI PDV   + ++       +   +L+    M ++G    VATY++++
Sbjct: 285 TAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIFGEMNDRGCQADVATYNTLI 344

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R+E   ELL +M   GV P+  TY+   K     KD    + L ++M++ G C
Sbjct: 345 KHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYILKTTEKPKDV---ISLMQRMEKSG-C 400

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  +YN+++ ++++ +    V+ +W++++ +G GPD  S+T+++HGL    K  EA  
Sbjct: 401 RLDSDTYNLILNLYVSWDYEKGVQLVWDEMERNGSGPDQRSFTIMVHGLHSHDKLDEALH 460

Query: 242 YFVEMIEKGLLPQKVT 257
           Y+  M  +G+ P+  T
Sbjct: 461 YYRTMESRGMTPEPRT 476



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 99/208 (47%), Gaps = 4/208 (1%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTS--FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA 115
           K +R   ++FDE+ V   +  VT+  F+++L+ Y+ AH+ Q ++D     K+ G    + 
Sbjct: 140 KKVRLMRQLFDEIPVESRQSVVTNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLV 199

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
            +  ++  LC    +E+AE L  +  ++   P  +++N     +  +     A +++ ++
Sbjct: 200 GFQILLMSLCRYKHVEEAEALFLQK-KDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEI 258

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
               L  P++ +Y   I       ++    +++  +   G+ PD+     +I  LC K++
Sbjct: 259 IASKL-KPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKR 317

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYR 263
             EA + F EM ++G      T+ TL +
Sbjct: 318 IPEALEIFGEMNDRGCQADVATYNTLIK 345


>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 587

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 141/332 (42%), Gaps = 51/332 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L++  C   ++  A   L  M+ RG  P+VVTYN+LL   C+           +  R
Sbjct: 155 YNPLMHALCVRGQVRDALVLLDNMLYRGCAPDVVTYNILLEAACK----------GRGYR 204

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D MRV G  P   ++++++    R      + + LN +   G  P    Y++V+
Sbjct: 205 QAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVL 264

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAE------------------------------- 150
           K L + GR ED EEL+ EM     CP +E                               
Sbjct: 265 KGLRTAGRWEDVEELIAEMFSEN-CPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDC 323

Query: 151 -----TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
                TYN        +   +GA+ L   M+ DG C PN+ +YNIL+       R +   
Sbjct: 324 TANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDG-CKPNIFTYNILVKGLCNAERWEDAE 382

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           ++   +  +   PD+ ++  +I  LC+K    +A + F +M EKG  P  VT+ ++  GL
Sbjct: 383 DLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGL 442

Query: 266 IQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
            ++  +     L  ++  +   F  E  NYH 
Sbjct: 443 AKTGKMEQSLELLNEMGSKG--FNPEI-NYHL 471



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 145/332 (43%), Gaps = 54/332 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++L  G+C++ R+D A R +  M    V P+   YN L++ +C R            +R
Sbjct: 123 YSALADGYCRVGRLDEARRVVDGM---PVLPSAYAYNPLMHALCVRGQ----------VR 169

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  + D M  RG  PDV +++I+L    +    + +++ ++ M+ +G  PT  TY+ ++
Sbjct: 170 DALVLLDNMLYRGCAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIM 229

Query: 122 KCLC-----------------------------------SCGRIEDAEELLGEMVRNGVC 146
             +C                                   + GR ED EEL+ EM      
Sbjct: 230 DGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCP 289

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           PS  T +              A++L  +M +   C  N+ +YN ++        +D    
Sbjct: 290 PSEATLSVVISSLCQEGLFQRAIRLLEKMSKHD-CTANIVTYNAVVSGLCEQGHVDGALY 348

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           + ++++  G  P++ +Y +L+ GLC  ++W++A     +M +   LP  +TF T+   L 
Sbjct: 349 LLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLC 408

Query: 267 QSDMLRTWRRLKKKLDEE-----SITFGSEFQ 293
           Q  +      + K++ E+     S+T+ S  +
Sbjct: 409 QKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIE 440



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 137/353 (38%), Gaps = 62/353 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA------------- 48
           Y  ++ G C+   +D A   L  +   G  PN V YN +L G+ R A             
Sbjct: 225 YNVIMDGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGL-RTAGRWEDVEELIAEM 283

Query: 49  ---SLHPSERF----------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
              +  PSE            E   + A ++ ++M       ++ +++ V+         
Sbjct: 284 FSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHV 343

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +L  L+ M+  G  P + TY+ +VK LC+  R EDAE+L+ +M +    P   T+N  
Sbjct: 344 DGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTI 403

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                 +     A+++++QM E G C PN  +Y+ +I       +M+   E+ N++   G
Sbjct: 404 IGFLCQKGLTMQAVEVFKQMPEKG-CCPNSVTYSSVIEGLAKTGKMEQSLELLNEMGSKG 462

Query: 216 LGPDLDS----------------------------------YTMLIHGLCEKQKWKEACQ 241
             P+++                                   Y  ++ GLC   K  +A  
Sbjct: 463 FNPEINYHLLAECLNEEDKLVEAIQMVHKLQDTGISPQAVLYNTILLGLCRNGKTDQAID 522

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
               M+  G +P + T+  L +GL     ++  R L   L    +   +  +N
Sbjct: 523 ILSNMVSDGCMPDESTYSILIQGLAHEGYMKEARELLSTLSSRDVIVDNLIKN 575



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 87/206 (42%), Gaps = 12/206 (5%)

Query: 99  LDKLNFMKEKGICPT-VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           LD    + E  +CP  VA  + +V+ LC  GR  DA  ++      G   +A TY+    
Sbjct: 72  LDAALRVVESSLCPPDVALANRLVRDLCRRGRPADAARVVEAC---GSAATAVTYSALAD 128

Query: 158 EY--RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
            Y   GR D        R++ +    +P+ ++YN L+       ++     + +++   G
Sbjct: 129 GYCRVGRLDE------ARRVVDGMPVLPSAYAYNPLMHALCVRGQVRDALVLLDNMLYRG 182

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
             PD+ +Y +L+   C+ + +++A +    M  +G  P  VT+  +  G+ +   +   R
Sbjct: 183 CAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYAR 242

Query: 276 RLKKKLDEESITFGSEFQNYHFKPYR 301
            L   L     T  +   N   K  R
Sbjct: 243 ELLNSLPSYGCTPNTVNYNTVLKGLR 268



 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/70 (21%), Positives = 34/70 (48%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +++ G C+  + D A   L  M+  G  P+  TY++L+ G+     +  +     T+
Sbjct: 503 LYNTILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLAHEGYMKEARELLSTL 562

Query: 61  RNAEKVFDEM 70
            + + + D +
Sbjct: 563 SSRDVIVDNL 572


>gi|242048586|ref|XP_002462039.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
 gi|241925416|gb|EER98560.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
          Length = 798

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 142/305 (46%), Gaps = 48/305 (15%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           + +A      M+  G  PN  TYNVL++G+C+R           T  +A K+FDEM  RG
Sbjct: 190 VPLALALYNRMVAAGCLPNRATYNVLMDGLCKRG----------TAVDALKLFDEMLQRG 239

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           I P+V + +I+L     A Q + + + LN M++KG  P   TY++ +  LC  GR+++A 
Sbjct: 240 ITPNVKTHTILLSSMCNAGQLKEAENLLNSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAI 299

Query: 135 ELLGEMVRNGV-CPSAETYNCF-------------FKEY--------------------R 160
           E L  + R G      + Y+C              F+ Y                    R
Sbjct: 300 ERLEALRRTGTFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADFSPDIVLYTIMIR 359

Query: 161 GRKDA---NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
           G  +A   + A   + +MKE     P+   YN L+        +D  R + +++  + + 
Sbjct: 360 GCAEAGRIDDAFAFFDEMKEKRF-TPDTFCYNTLLKALCDSGDLDGARSLMSEMAQNNVV 418

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            D +++T++IHGLC+KQ   EA Q F  M+E G  P  +T+  L  GL ++  L   R L
Sbjct: 419 LDTNTHTIMIHGLCKKQLVDEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAHRLEEARML 478

Query: 278 KKKLD 282
             K++
Sbjct: 479 FYKME 483



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 149/336 (44%), Gaps = 50/336 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTI 60
           +T L+   C   ++  AE  L  M ++G  P+ VTYN  L+G+C+   +  + ER E   
Sbjct: 247 HTILLSSMCNAGQLKEAENLLNSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALR 306

Query: 61  RNAEKVF---------DEMRVRG-----------------IEPDVTSFSIVLHVYSRAHQ 94
           R    V          D + + G                   PD+  ++I++   + A +
Sbjct: 307 RTGTFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADFSPDIVLYTIMIRGCAEAGR 366

Query: 95  PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
              +    + MKEK   P    Y++++K LC  G ++ A  L+ EM +N V     T+  
Sbjct: 367 IDDAFAFFDEMKEKRFTPDTFCYNTLLKALCDSGDLDGARSLMSEMAQNNVVLDTNTHTI 426

Query: 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR------EIW 208
                  ++  + AM+++  M E G C P + +YN+LI      +R++  R      E+ 
Sbjct: 427 MIHGLCKKQLVDEAMQVFDGMVEVG-CHPTVMTYNVLIDGLYRAHRLEEARMLFYKMEVG 485

Query: 209 ND-------VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           N+         G+    D +S   L+  +C+  +  +A +    +++ G++P  VT+ TL
Sbjct: 486 NNPSLFLRLTLGANQVKDSESLQKLVDSMCQSGQVLKAYKLLRGIMDSGVVPDVVTYNTL 545

Query: 262 YRGLIQ----SDMLRTWRRLKKK---LDEESITFGS 290
             GL +       LR +R L+ K   LDE  IT+G+
Sbjct: 546 LNGLCKVRNLDGALRLFRELQVKGFSLDE--ITYGT 579



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 123/289 (42%), Gaps = 43/289 (14%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF---- 56
           +YT +I G  +  RID A  F  EM E+   P+   YN LL  +C    L  +       
Sbjct: 353 LYTIMIRGCAEAGRIDDAFAFFDEMKEKRFTPDTFCYNTLLKALCDSGDLDGARSLMSEM 412

Query: 57  ---------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                ++ +  A +VFD M   G  P V ++++++    RAH+ 
Sbjct: 413 AQNNVVLDTNTHTIMIHGLCKKQLVDEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAHR- 471

Query: 96  QLSLDKLNFMK-EKGICPTV--------------ATYSSVVKCLCSCGRIEDAEELLGEM 140
            L   ++ F K E G  P++               +   +V  +C  G++  A +LL  +
Sbjct: 472 -LEEARMLFYKMEVGNNPSLFLRLTLGANQVKDSESLQKLVDSMCQSGQVLKAYKLLRGI 530

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
           + +GV P   TYN         ++ +GA++L+R+++  G  +  + +Y  LI   +  +R
Sbjct: 531 MDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFSLDEI-TYGTLIDSLLRAHR 589

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            +    ++ D+   G  P L  Y  ++  LC   K  +A  ++ + + K
Sbjct: 590 YNDAMTLFQDILHIGGTPSLSIYNSIMRSLCRMNKLSQAINFWFDHLLK 638



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/142 (19%), Positives = 66/142 (46%), Gaps = 1/142 (0%)

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM-D 202
           G+ P A  +      +      + A+  + +M+ +  C P    YN ++ + +A   +  
Sbjct: 132 GLQPPAAAFEALIFAHASAGRHHEAVDAFSRMEGEFGCRPTTFVYNAVLRVLVASGGVVP 191

Query: 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
           +   ++N +  +G  P+  +Y +L+ GLC++    +A + F EM+++G+ P   T   L 
Sbjct: 192 LALALYNRMVAAGCLPNRATYNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKTHTILL 251

Query: 263 RGLIQSDMLRTWRRLKKKLDEE 284
             +  +  L+    L   ++++
Sbjct: 252 SSMCNAGQLKEAENLLNSMEDK 273


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 132/290 (45%), Gaps = 28/290 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y +LI+G C    +D A R   EM ++G+ P++ TY +L+NG  +   +  +  F     
Sbjct: 393 YNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEML 452

Query: 57  -----------------EKTIRNAEKVF---DEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                            E  I +    F   +EM   G  PDV ++++ +H   +    +
Sbjct: 453 SKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFE 512

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + D L  M   G+ P   TY+S++      G +  A E+  EM+  GV PS  TY    
Sbjct: 513 EACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLI 572

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVP-NMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
             +  ++  + A   + +M E    VP N+ +YN +I       RMD   + +++++  G
Sbjct: 573 HAHAAKQMLDLAFMYFSKMLEKS--VPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKG 630

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           + P+  SYT+LI+  C    W+EA + + EM+++ + P   T     + L
Sbjct: 631 ILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNL 680



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 125/276 (45%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C+      A   + EM+ R   P + TYN L+ G+C+             + 
Sbjct: 288 YNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQ----------VT 337

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                F +M      PD+ SF+ +L+ Y R      +    + +K + + PTV TY++++
Sbjct: 338 GVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLI 397

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G ++ A  L  EM   G+ P   TY             + A   + +M   GL 
Sbjct: 398 HGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGL- 456

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN  I   M +    +   +  ++  +G  PD+ +Y + +H LC++  ++EAC 
Sbjct: 457 KPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACD 516

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
               M+  GL+P  VT+ ++  G +++  LR  R +
Sbjct: 517 LLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREV 552



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 133/285 (46%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + SL+YG+C+   I  A     E+  R + P V+TYN L++G+C    L  + R +K   
Sbjct: 358 FNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKK--- 414

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                  EM  +G+ PD+ +++I+++   +     ++    N M  KG+ P    Y++ +
Sbjct: 415 -------EMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRI 467

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                      A  +  EM+  G  P   TYN F      + +   A  L   M  DGL 
Sbjct: 468 VGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGL- 526

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+  +Y  +I  F+    +   RE++N++   G+ P + +YT+LIH    KQ    A  
Sbjct: 527 IPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFM 586

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           YF +M+EK +    +T+  +  GL  +  +    +   +++E+ I
Sbjct: 587 YFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGI 631



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 127/263 (48%), Gaps = 11/263 (4%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           +MI  G+ P+V   N +L  +          R E  +  A+ V+  M   GI+P V +++
Sbjct: 170 KMIRNGLLPDVKNCNRILRVL----------RDENLLSKAKNVYGMMEQFGIKPTVVTYN 219

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            +L  Y +  +   +L+ L+ M+E+G  P   TY+ +V  L   G +E A+ L+ EM+ +
Sbjct: 220 TMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNS 279

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+  SA TYN     +  +     A  L  +M  +    P + +YN L+       ++  
Sbjct: 280 GLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMV-NRRAFPTLSTYNTLMYGLCKWVQVTG 338

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
           VR  ++D+  S   PD+ S+  L++G C      EA   F E+  + L+P  +T+ TL  
Sbjct: 339 VRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIH 398

Query: 264 GLIQSDMLRTWRRLKKKLDEESI 286
           GL     L    RLKK++ ++ +
Sbjct: 399 GLCMWGYLDAALRLKKEMTDQGL 421



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 11/252 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N +  A+   G M + G++P VVTYN +L+  C+          E  +  A ++  EM+ 
Sbjct: 194 NLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCK----------EGRVDQALELLSEMQE 243

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           RG  P+  +++++++  S+  + + +   +  M   G+  +  TY+ ++   C  G   +
Sbjct: 244 RGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVE 303

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A +L+ EMV     P+  TYN             G    +  M +     P++ S+N L+
Sbjct: 304 AFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKF-TPDIVSFNSLL 362

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
             +     +     +++++K   L P + +Y  LIHGLC       A +   EM ++GL 
Sbjct: 363 YGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLF 422

Query: 253 PQKVTFETLYRG 264
           P   T+  L  G
Sbjct: 423 PDIFTYTILVNG 434



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI   C +   + A R   EM++R ++P+  T++V L  + R   +H  +  E  I+
Sbjct: 638 YTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQVHAVQCVESLIQ 697

Query: 62  NAEKVFD---EMRVRGIE 76
           N E   +   EM + G+E
Sbjct: 698 NVEDNINVRIEMLIGGLE 715


>gi|302791145|ref|XP_002977339.1| hypothetical protein SELMODRAFT_32460 [Selaginella moellendorffii]
 gi|300154709|gb|EFJ21343.1| hypothetical protein SELMODRAFT_32460 [Selaginella moellendorffii]
          Length = 336

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 122/248 (49%), Gaps = 13/248 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI+G C  N +D     + EM   G  P++ TYN L++G+C+             + 
Sbjct: 70  YNSLIHGLCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGR----------VP 119

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F EM+ +   PDV ++S ++  + +  +  ++    + M ++   P V T+ ++V
Sbjct: 120 EANRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLV 179

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
           +  C+ G ++DAE LL EMV +   P   TY     ++   K    A ++ ++M + G  
Sbjct: 180 EGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDDFCKVKRMVEAHRVLKRMAKGGSN 239

Query: 181 --CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
             C  +M +Y +++       RM    E+   +K SG  P  D Y  LI GLC+ ++ ++
Sbjct: 240 KNCKADMFAYRMMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELRK 299

Query: 239 ACQYFVEM 246
           A +   EM
Sbjct: 300 AMEVLEEM 307



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 109/249 (43%), Gaps = 16/249 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + ++  G+ +   +D   + L +M       N+ T+N LL           S   +  + 
Sbjct: 5   WNAIATGFSQCGLLDETTKILDKMPAW----NLATWNTLLT----------SHSLQGNLT 50

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +VF EM  + + P++ +++ ++H     +    +L  +  M   G  P + TY++++
Sbjct: 51  GAIRVFHEMPDKNL-PNMVTYNSLIHGLCMTNGVDSTLLLMEEMTATGCLPDINTYNTLI 109

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR+ +A  L GEM      P   TY+C    +      N A  L+  M +    
Sbjct: 110 DGLCKTGRVPEANRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQA-A 168

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ ++  L+  +     +D    +  ++  S   PD+ +YT L+   C+ ++  EA +
Sbjct: 169 LPDVVTFPTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDDFCKVKRMVEAHR 228

Query: 242 YFVEMIEKG 250
               M + G
Sbjct: 229 VLKRMAKGG 237



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 86/183 (46%), Gaps = 2/183 (1%)

Query: 99  LDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158
           LD+   + +K     +AT+++++      G +  A  +  EM    + P+  TYN     
Sbjct: 18  LDETTKILDKMPAWNLATWNTLLTSHSLQGNLTGAIRVFHEMPDKNL-PNMVTYNSLIHG 76

Query: 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218
                  +  + L  +M   G C+P++++YN LI       R+     ++ ++K     P
Sbjct: 77  LCMTNGVDSTLLLMEEMTATG-CLPDINTYNTLIDGLCKTGRVPEANRLFGEMKAKFCNP 135

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
           D+ +Y+ LI G C+  +   AC  F +M+++  LP  VTF TL  G   + ++    RL 
Sbjct: 136 DVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLL 195

Query: 279 KKL 281
           +++
Sbjct: 196 EEM 198



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 98/217 (45%), Gaps = 6/217 (2%)

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           K+ D+M       ++ +++ +L  +S       ++   + M +K + P + TY+S++  L
Sbjct: 23  KILDKMPAW----NLATWNTLLTSHSLQGNLTGAIRVFHEMPDKNL-PNMVTYNSLIHGL 77

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C    ++    L+ EM   G  P   TYN              A +L+ +MK    C P+
Sbjct: 78  CMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEANRLFGEMKAK-FCNPD 136

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +Y+ LIG F  L+R++M   +++D+      PD+ ++  L+ G C      +A +   
Sbjct: 137 VITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLE 196

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           EM+     P   T+ +L     +   +    R+ K++
Sbjct: 197 EMVASDCSPDVYTYTSLVDDFCKVKRMVEAHRVLKRM 233



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 14/195 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G+CK++RI+MA     +M+++   P+VVT+  L+ G C              + 
Sbjct: 140 YSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCNAG----------LVD 189

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGI---CPT-VATY 117
           +AE++ +EM      PDV +++ ++  + +  +   +   L  M + G    C   +  Y
Sbjct: 190 DAERLLEEMVASDCSPDVYTYTSLVDDFCKVKRMVEAHRVLKRMAKGGSNKNCKADMFAY 249

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
             ++  LC  GR+  A ELL  + ++G  P  + Y    +     K+   AM++  +M  
Sbjct: 250 RMMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELRKAMEVLEEMTL 309

Query: 178 DGLCVPNMHSYNILI 192
                PN  +Y  +I
Sbjct: 310 SRKGRPNAKAYKAVI 324


>gi|297719649|ref|NP_001172186.1| Os01g0151900 [Oryza sativa Japonica Group]
 gi|9663979|dbj|BAB03620.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|13872936|dbj|BAB44041.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|215768885|dbj|BAH01114.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255672883|dbj|BAH90916.1| Os01g0151900 [Oryza sativa Japonica Group]
          Length = 534

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 130/256 (50%), Gaps = 14/256 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  ++ GWC    +  A+R   E+I   ++P++ TY   +N + +   L           
Sbjct: 255 WNIILNGWCVKGSLADAKRVWNEIIASKLKPDLFTYGTFINSLTKSGKLS---------- 304

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F  M  +GI PDV   + ++       +   +L+    M ++G    VATY++++
Sbjct: 305 TAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIFGEMNDRGCQADVATYNTLI 364

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R+E   ELL +M   GV P+  TY+   K     KD    + L ++M++ G C
Sbjct: 365 KHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYILKTTEKPKDV---ISLMQRMEKSG-C 420

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  +YN+++ ++++ +    V+ +W++++ +G GPD  S+T+++HGL    K  EA  
Sbjct: 421 RLDSDTYNLILNLYVSWDYEKGVQLVWDEMERNGSGPDQRSFTIMVHGLHSHDKLDEALH 480

Query: 242 YFVEMIEKGLLPQKVT 257
           Y+  M  +G+ P+  T
Sbjct: 481 YYRTMESRGMTPEPRT 496



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 99/208 (47%), Gaps = 4/208 (1%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTS--FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA 115
           K +R   ++FDE+ V   +  VT+  F+++L+ Y+ AH+ Q ++D     K+ G    + 
Sbjct: 160 KKVRLMRQLFDEIPVESRQSVVTNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLV 219

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
            +  ++  LC    +E+AE L  +  ++   P  +++N     +  +     A +++ ++
Sbjct: 220 GFQILLMSLCRYKHVEEAEALFLQK-KDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEI 278

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
               L  P++ +Y   I       ++    +++  +   G+ PD+     +I  LC K++
Sbjct: 279 IASKL-KPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKR 337

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYR 263
             EA + F EM ++G      T+ TL +
Sbjct: 338 IPEALEIFGEMNDRGCQADVATYNTLIK 365


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 130/265 (49%), Gaps = 12/265 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++T+LI  + +  R+D A   L EM    +EP+VV YNV ++   +             +
Sbjct: 237 LFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGK----------V 286

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K F EM+  G+  D  +++ ++ V  +A +   +++    M +    P    Y+++
Sbjct: 287 DMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTM 346

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +      G+ EDA  LL    R G  PS  +YNC       +   + A+K + +MK+D  
Sbjct: 347 IMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDA- 405

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +PN+ +YNI+I M     +++    + + +K +GL P++ +  +++  LC+ Q+  +AC
Sbjct: 406 -IPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDAC 464

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGL 265
             F  +  K   P  VT+ +L  GL
Sbjct: 465 SIFEGLDHKTCRPDAVTYCSLIEGL 489



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 126/276 (45%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI+G  K      A      M E+G   +   YN +++G C+             + 
Sbjct: 587 YTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGK----------VN 636

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ +EM+ +G EP V ++  V+   ++  +   +       K KGI   V  YSS++
Sbjct: 637 KAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLI 696

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 GRI++A  ++ E+++ G+ P+  T+NC        ++ + A+  ++ MK D  C
Sbjct: 697 DGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMK-DLKC 755

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN  +Y+ILI     + + +     W +++  G  P++ +YT +I GL +     EA  
Sbjct: 756 TPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADT 815

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F +  EKG +     +  +  GL  ++      RL
Sbjct: 816 LFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRL 851



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 138/329 (41%), Gaps = 46/329 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTSLI  + K  R +   +   EM+  G  P+++  N  ++ V +             I
Sbjct: 516 VYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGE----------I 565

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                +F E++  G  PD  S++I++H   +A     + +    MKE+G       Y++V
Sbjct: 566 EKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTV 625

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G++  A +LL EM   G  P+  TY             + A  L+ + K  G+
Sbjct: 626 IDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGI 685

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD-------LD------------ 221
            + N+  Y+ LI  F  + R+D    I  ++   GL P+       LD            
Sbjct: 686 EL-NVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEAL 744

Query: 222 ----------------SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
                           +Y++LIHGLC+ +K+ +A  ++ EM ++G  P   T+ T+  GL
Sbjct: 745 VCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGL 804

Query: 266 IQSDMLRTWRRLKKKLDEESITFGSEFQN 294
            ++  +     L +K  E+     S   N
Sbjct: 805 AKAGNIVEADTLFEKFKEKGGVADSAIYN 833



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 145/329 (44%), Gaps = 52/329 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+    + + A   L     +G  P+VV+YN +L+ + R+            + 
Sbjct: 343 YNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQ----------VD 392

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K F+EM+   I P++++++I++ +  +A + + +L   + MK+ G+ P V T + +V
Sbjct: 393 EALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMV 451

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD-ANGAMKLYRQM----- 175
             LC   R++DA  +   +      P A TY C   E  GR    + A KLY QM     
Sbjct: 452 DRLCKAQRLDDACSIFEGLDHKTCRPDAVTY-CSLIEGLGRHGRVDEAYKLYEQMLDANQ 510

Query: 176 -------------------KEDGL----------CVPNMHSYNILIGMFMALNRMDMVRE 206
                              KEDG           C P++   N  +        ++  R 
Sbjct: 511 IPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRA 570

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           ++ ++K  G  PD  SYT+LIHGL +     EA + F  M E+G +     + T+  G  
Sbjct: 571 LFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFC 630

Query: 267 QSDMLRTWRRLKKKLDEES-----ITFGS 290
           +S  +    +L +++  +      +T+GS
Sbjct: 631 KSGKVNKAYQLLEEMKTKGHEPTVVTYGS 659



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 13/177 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+SLI G+ K+ RID A   + E++++G+ PNV T+N LL+ + +           + I
Sbjct: 691 IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVK----------AEEI 740

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A   F  M+     P+  ++SI++H   +  +   +      M+++G  P V TY+++
Sbjct: 741 SEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTM 800

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           +  L   G I +A+ L  +    G    +  YN   +   G  +AN A   YR  +E
Sbjct: 801 ISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIE---GLSNANRASDAYRLFEE 854



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 120/280 (42%), Gaps = 12/280 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTS+I   CK +R++ A      M +    P    YN ++ G         + +FE    
Sbjct: 308 YTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMG------YGMAGKFE---- 357

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  + +  R +G  P V S++ +L    R  Q   +L K   MK+  I P ++TY+ ++
Sbjct: 358 DAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMI 416

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++E A  +   M   G+ P+  T N         +  + A  ++  + +   C
Sbjct: 417 DMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGL-DHKTC 475

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +Y  LI       R+D   +++  +  +   P+   YT LI    +  + ++  +
Sbjct: 476 RPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHK 535

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
            + EM+  G  P  +   T    + ++  +   R L +++
Sbjct: 536 IYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEI 575



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 108/260 (41%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SL+    +  + +  E+ L EM   G  P+        N  C    L   +   + +R
Sbjct: 133 YNSLLMVMARTRKFNCLEQILEEMSIAGFGPS--------NNTCIEIVLSFIK--SRKLR 182

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A      MR     P  ++++ ++   S +      L     M+E G    V  +++++
Sbjct: 183 EAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLI 242

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +     GR++ A  LL EM  N + P    YN     +      + A K + +MK +GL 
Sbjct: 243 RVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLV 302

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++ +Y  +IG+    +R++   E++  +  +   P   +Y  +I G     K+++A  
Sbjct: 303 LDDV-TYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYS 361

Query: 242 YFVEMIEKGLLPQKVTFETL 261
                  KG +P  V++  +
Sbjct: 362 LLERQRRKGCIPSVVSYNCI 381



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 104/244 (42%), Gaps = 9/244 (3%)

Query: 40  LLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
           L+ GV RR  L          R AE++ D    R       +++ +L V +R  +     
Sbjct: 99  LVIGVLRR--LKDVNNAVNYFRWAERLTDRAHCR------EAYNSLLMVMARTRKFNCLE 150

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
             L  M   G  P+  T   +V       ++ +A   +  M +    P+   Y       
Sbjct: 151 QILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGAL 210

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
              +D++  + L++QM+E G  V N+H +  LI +F    R+D    + +++K + L PD
Sbjct: 211 STSRDSDCMLTLFQQMQELGYAV-NVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPD 269

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
           +  Y + I    +  K   A + F EM   GL+   VT+ ++   L ++D L     L +
Sbjct: 270 VVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFE 329

Query: 280 KLDE 283
            +D+
Sbjct: 330 HMDQ 333


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 139/299 (46%), Gaps = 17/299 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI   C   + + A   LG+M+E+G+ PNV+TYN L+NG C+R            I 
Sbjct: 361 YTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG----------MIE 410

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  V + M  R + P+  +++ ++  Y +++  + ++  LN M E+ + P V TY+S++
Sbjct: 411 DAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHK-AMGVLNKMLERKVLPDVVTYNSLI 469

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G  + A  LL  M   G+ P   TY          K    A  L+  +++ G+ 
Sbjct: 470 DGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGV- 528

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+  Y  LI  +    ++D    +   +      P+  ++  LIHGLC   K KEA  
Sbjct: 529 NPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATL 588

Query: 242 YFVEMIEKGLLPQKVTFETL-YRGLIQSDMLRTWRRLKKKLDE----ESITFGSEFQNY 295
              +M++ GL P   T   L +R L   D    + R ++ L      ++ T+ +  Q Y
Sbjct: 589 LEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTY 647



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 133/280 (47%), Gaps = 30/280 (10%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT+LI G+CK  ++D A   L +M+ +   PN +T+N L++G+C    L  +   E   
Sbjct: 534 MYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLE--- 590

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                  ++M   G++P V++ +I++H   +      +  +   M   G  P   TY++ 
Sbjct: 591 -------EKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTF 643

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C  GR+ DAE+++ +M  NGV P   TY+   K Y      N A  + ++M++ G 
Sbjct: 644 IQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTG- 702

Query: 181 CVPNMHSYNILIGMFM---------------ALNRM---DMVREIWNDVKGSGLGPDLDS 222
           C P+ H++  LI   +               A++ M   D V E+   +    + P+  S
Sbjct: 703 CEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKS 762

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMI-EKGLLPQKVTFETL 261
           Y  LI G+CE    + A + F  M   +G+ P ++ F  L
Sbjct: 763 YEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNAL 802



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 135/281 (48%), Gaps = 11/281 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+    +   +D  ++   EM+E  V PN+ TYN ++NG C+  ++  + ++   I 
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A          G++PD  +++ ++  Y +      +    N M  KG       Y+ ++
Sbjct: 246 EA----------GLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLI 295

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   RI++A +L  +M  +   P+  TY    K   G +  + A+ L ++M+E G+ 
Sbjct: 296 HGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGI- 354

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+H+Y +LI    +  + +  RE+   +   GL P++ +Y  LI+G C++   ++A  
Sbjct: 355 KPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVD 414

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
               M  + L P   T+  L +G  +S++ +    L K L+
Sbjct: 415 VVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLE 455



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 126/263 (47%), Gaps = 12/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+CK N +  A   L +M+ER V P+VVTYN L++G CR  +            
Sbjct: 431 YNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFD---------- 479

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++   M  RG+ PD  +++ ++    ++ + + + D  + +++KG+ P V  Y++++
Sbjct: 480 SAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALI 539

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G++++A  +L +M+     P++ T+N              A  L  +M + GL 
Sbjct: 540 DGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGL- 598

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +  ILI   +     D     +  +  SG  PD  +YT  I   C + +  +A  
Sbjct: 599 QPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAED 658

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
              +M E G+ P   T+ +L +G
Sbjct: 659 MMAKMRENGVSPDLFTYSSLIKG 681



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 1/173 (0%)

Query: 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
           +  Y++++  L   G +++ +++  EM+ + VCP+  TYN     Y    +   A +   
Sbjct: 183 IGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVS 242

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           ++ E GL  P+  +Y  LI  +     +D   +++N++   G   +  +YT LIHGLC  
Sbjct: 243 KIVEAGL-DPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVA 301

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           ++  EA   FV+M +    P   T+  L + L  S+       L K+++E  I
Sbjct: 302 RRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGI 354



 Score = 43.9 bits (102), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 51/272 (18%), Positives = 113/272 (41%), Gaps = 45/272 (16%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNG------------VCRRAS 49
           YT+ I  +C+  R+  AE  + +M E GV P++ TY+ L+ G            V +R  
Sbjct: 640 YTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMR 699

Query: 50  LHPSERFEKTIRNAEKVFDEMRV---RGIEPDVTS------FSIVLHVYSRAHQPQL--- 97
               E  + T  +  K   EM+    +G EP++ +      F  V+ +  +  +  +   
Sbjct: 700 DTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPN 759

Query: 98  --SLDKL------------------NFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
             S +KL                  +  + +GI P+   +++++ C C   +  +A +++
Sbjct: 760 AKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVV 819

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
            +M+  G  P  E+          + +      +++ + + G     + ++ I+I     
Sbjct: 820 DDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDEL-AWKIIIDGVGK 878

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229
              ++   E++N ++ +G      +Y++LI G
Sbjct: 879 QGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910


>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
 gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 148/305 (48%), Gaps = 19/305 (6%)

Query: 2   YTSLIYGWCKI-NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           YT LI   C+   R+D A R   EM   G E ++VTY  L++G C+             I
Sbjct: 309 YTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWG----------MI 358

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                V D+MR +G+ P   ++  ++  + +  Q +  L+ +  MK +G  P +  Y+ V
Sbjct: 359 DKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVV 418

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++  C  G +++A  L  EM  NG+ P  +T+      +  +     A   +++M   G+
Sbjct: 419 IRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGI 478

Query: 181 -CVPNMHSYNILIGMFMALNRMDMVREIWNDV--KGSGLGPDLDSYTMLIHGLCEKQKWK 237
              P   +   L+   +  ++++M +++W+ +  K S    ++ ++T+ IH L  K   K
Sbjct: 479 FSAPQYGTLKSLLNNLVRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALYAKGHVK 538

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297
           EAC Y ++M+E  L+PQ  T+  L +GL   + L   R +  ++ E+ +   SE +   F
Sbjct: 539 EACSYCLDMMEMDLMPQPNTYAKLMKGL---NKLYN-RTIAAEITEKVVKMASE-REMSF 593

Query: 298 KPYRR 302
           K Y++
Sbjct: 594 KMYKK 598



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 149/333 (44%), Gaps = 63/333 (18%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS------- 53
           ++  L+  +   N +  A   L EM + G+EP+   +  LL+ +C+  S+  +       
Sbjct: 169 LFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDM 228

Query: 54  -ERFEKTIR----------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
            E+F   +R                 A++V  +M+  G+EPD+  F+ +L  Y+ A +  
Sbjct: 229 REKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMA 288

Query: 97  LSLDKLNFMKEKGICPTV------------------------------------ATYSSV 120
            + D +N M+++G  P V                                     TY+++
Sbjct: 289 DAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTAL 348

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G I+    +L +M + GV PS  TY      +  ++     ++L  +MK  G 
Sbjct: 349 ISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRG- 407

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C P++  YN++I +   L  +     +WN+++ +GL P +D++ ++I+G   +    EAC
Sbjct: 408 CHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEAC 467

Query: 241 QYFVEMIEKGLL--PQKVTFETLYRGLIQSDML 271
            +F EM+ +G+   PQ  T ++L   L++ D L
Sbjct: 468 NHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKL 500


>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
 gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
 gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 124/256 (48%), Gaps = 14/256 (5%)

Query: 29  GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88
           G EP + +YN LLN               K     E +F      G+ P++ ++++++ +
Sbjct: 109 GCEPAIRSYNTLLNAFVE----------AKQWVKVESLFAYFETAGVAPNLQTYNVLIKM 158

Query: 89  YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148
             +  + + +   L++M ++G  P V +YS+V+  L   G+++DA EL  EM   GV P 
Sbjct: 159 SCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPD 218

Query: 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208
              YN     +   KD   AM+L+ ++ ED    PN+ ++NI+I       R+D   +IW
Sbjct: 219 VTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIW 278

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ- 267
             +K +    DL +Y+ LIHGLC+     +A   F E+ E+      VT+ T+  G  + 
Sbjct: 279 ERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRC 338

Query: 268 ---SDMLRTWRRLKKK 280
               + L  WR ++ K
Sbjct: 339 GKIKESLELWRIMEHK 354



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 123/288 (42%), Gaps = 25/288 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SLI+G C    +D AE    E+ ER    +VVTYN +L G CR   +  S    + + 
Sbjct: 293 YSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIME 352

Query: 62  NAEKV-----------------FDE-------MRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
           +   V                  DE       M  +G   D T++ I +H          
Sbjct: 353 HKNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNK 412

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           +L  +  ++  G    V  Y+S++ CLC   R+E+A  L+ EM ++GV  ++   N    
Sbjct: 413 ALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIG 472

Query: 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
                     A    R+M ++G C P + SYNILI       +         ++  +G  
Sbjct: 473 GLIRDSRLGEASFFLREMGKNG-CRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWK 531

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           PDL +Y++L+ GLC  +K   A + + + ++ GL    +    L  GL
Sbjct: 532 PDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGL 579



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 115/265 (43%), Gaps = 46/265 (17%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
            +LI G  + +R+  A  FL EM + G  P VV+YN+L+ G+C+      +  F K    
Sbjct: 468 NALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVK---- 523

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
                 EM   G +PD+ ++SI+L    R  +  L+L+  +   + G+   V  ++ ++ 
Sbjct: 524 ------EMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIH 577

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LCS G+++DA  ++  M                 E+R                    C 
Sbjct: 578 GLCSVGKLDDAMTVMANM-----------------EHRN-------------------CT 601

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
            N+ +YN L+  F  +   +    IW  +   GL PD+ SY  ++ GLC  +    A ++
Sbjct: 602 ANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEF 661

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQ 267
           F +    G+ P   T+  L R ++ 
Sbjct: 662 FDDARNHGIFPTVYTWNILVRAVVN 686



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 127/267 (47%), Gaps = 17/267 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI   CK    + A  FL  M + G +P+V +Y+ ++N + +   L           
Sbjct: 152 YNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLD---------- 201

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVY--SRAHQPQLSL-DKLNFMKEKGICPTVATYS 118
           +A ++FDEM  RG+ PDVT ++I++  +   + H+  + L D+L  +++  + P V T++
Sbjct: 202 DALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRL--LEDSSVYPNVKTHN 259

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++  L  CGR++D  ++   M +N       TY+          + + A  ++ ++ E 
Sbjct: 260 IMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDER 319

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
              + ++ +YN ++G F    ++    E+W  ++      ++ SY +LI GL E  K  E
Sbjct: 320 KASI-DVVTYNTMLGGFCRCGKIKESLELWRIMEHKN-SVNIVSYNILIKGLLENGKIDE 377

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGL 265
           A   +  M  KG    K T+     GL
Sbjct: 378 ATMIWRLMPAKGYAADKTTYGIFIHGL 404



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 125/294 (42%), Gaps = 13/294 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I    K  ++D A     EM ERGV P+V  YN+L++G  +          EK  +
Sbjct: 187 YSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLK----------EKDHK 236

Query: 62  NAEKVFDEM-RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            A +++D +     + P+V + +I++   S+  +    L     MK+      + TYSS+
Sbjct: 237 TAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSL 296

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G ++ AE +  E+          TYN     +        +++L+R M+    
Sbjct: 297 IHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKN- 355

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              N+ SYNILI   +   ++D    IW  +   G   D  +Y + IHGLC      +A 
Sbjct: 356 -SVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKAL 414

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
               E+   G       + ++   L +   L     L K++ +  +   S   N
Sbjct: 415 GVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCN 468



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 1/145 (0%)

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G  P+  +YN     +   K       L+   +  G+  PN+ +YN+LI M       + 
Sbjct: 109 GCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGV-APNLQTYNVLIKMSCKKKEFEK 167

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
            R   + +   G  PD+ SY+ +I+ L +  K  +A + F EM E+G+ P    +  L  
Sbjct: 168 ARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILID 227

Query: 264 GLIQSDMLRTWRRLKKKLDEESITF 288
           G ++    +T   L  +L E+S  +
Sbjct: 228 GFLKEKDHKTAMELWDRLLEDSSVY 252



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 84/183 (45%), Gaps = 2/183 (1%)

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN-CFFKEYRGRKD 164
           +  G   +   Y  +++ L     +     ++ E++R+  C   E       K Y     
Sbjct: 35  RHPGYAHSAVVYHHILRRLSETRMVNHVSRIV-ELIRSQECKCDEDVALSVIKTYGKNSM 93

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
            + A+ ++++M+E   C P + SYN L+  F+   +   V  ++   + +G+ P+L +Y 
Sbjct: 94  PDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYN 153

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284
           +LI   C+K+++++A  +   M ++G  P   ++ T+   L ++  L     L  ++ E 
Sbjct: 154 VLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSER 213

Query: 285 SIT 287
            + 
Sbjct: 214 GVA 216



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 10/124 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           M+  LI+G C + ++D A   +  M  R    N+VTYN L+ G  +   +  S R     
Sbjct: 571 MHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFK---VGDSNR----- 622

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  ++  M   G++PD+ S++ ++           +++  +  +  GI PTV T++ +
Sbjct: 623 --ATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNIL 680

Query: 121 VKCL 124
           V+ +
Sbjct: 681 VRAV 684


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 123/260 (47%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI   CK  +I  A    GEM  +G +P++ T+N L+ G+CR   +           
Sbjct: 455 YNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEME---------- 504

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  ++ +M + G+  +  +F+ ++H + R  + Q +L  +N M  +G      TY+ ++
Sbjct: 505 DALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLI 564

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC  G +E    L  EM+R G+ PS  T N     +      + A++  R M   G  
Sbjct: 565 KALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFS 624

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN LI       R+     ++  ++  G+ PD  +Y  LI  LC +  + +AC 
Sbjct: 625 -PDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACF 683

Query: 242 YFVEMIEKGLLPQKVTFETL 261
                +E G +P  VT+  L
Sbjct: 684 LLYRGVENGFVPNDVTWNIL 703



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 132/285 (46%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++L+ G CK      A   + +M  +G +PN+ TY +L++G C++  L           
Sbjct: 385 FSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLE---------- 434

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +  EM  +G   +   ++ ++    +  +   +LD    M  KG  P + T++S++
Sbjct: 435 EAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLI 494

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    +EDA  L  +MV  GV  ++ T+N     +  R +   A+KL   M   G C
Sbjct: 495 FGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRG-C 553

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  +YN LI        ++    ++ ++   GL P + +  +LI+G C   K   A +
Sbjct: 554 PLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALE 613

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +  +MI +G  P  VT+ +L  GL +   ++    L +KL  E I
Sbjct: 614 FMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGI 658



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 145/308 (47%), Gaps = 23/308 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           + ++IYG+C++NR+    + +  MI +G  PN +TY  L++G+C+   +           
Sbjct: 283 FNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVP 342

Query: 51  -----HPSERFEKTIRNAEK------VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
                H +      +RN         V+D+M   G  PDV +FS +++   +      +L
Sbjct: 343 GPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSAL 402

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           + +N M  KG  P + TY+ ++   C  G++E+A  +L EM+  G   +   YN      
Sbjct: 403 ELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISAL 462

Query: 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
                 + A+ ++ +M   G C P++ ++N LI     ++ M+    ++ D+   G+  +
Sbjct: 463 CKHGKIHEALDMFGEMSSKG-CKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIAN 521

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
             ++  LIH    + + +EA +   +M+ +G    ++T+  L + L ++  +     L +
Sbjct: 522 SVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFE 581

Query: 280 KLDEESIT 287
           ++  + +T
Sbjct: 582 EMIRKGLT 589



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 130/303 (42%), Gaps = 16/303 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI    K +R+D A + L EM   G  P+V T+N ++ G CR             +
Sbjct: 247 IYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRL----------NRV 296

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
               K+ D M ++G  P+  ++  ++H   +  +    +D+   +  K   P V  ++++
Sbjct: 297 LEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCR----IDEAQALLSKVPGPNVVHFNTL 352

Query: 121 VKCLCSCGRIEDAEELL-GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           V      GR+ +A   +  +M+ NG  P   T++        +     A++L   M   G
Sbjct: 353 VNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKG 412

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            C PN+++Y ILI  F    +++    I  ++   G   +   Y  LI  LC+  K  EA
Sbjct: 413 -CKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEA 471

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
              F EM  KG  P   TF +L  GL + D +     L + +  E +   S   N     
Sbjct: 472 LDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHA 531

Query: 300 YRR 302
           + R
Sbjct: 532 FLR 534



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 121/256 (47%), Gaps = 14/256 (5%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           C +N +D A   L +M + G  PN + Y  L++ + +R            +  A K+ +E
Sbjct: 221 CMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKR----------DRVDEALKLLEE 270

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           M + G  PDV +F+ V++ + R ++       ++ M  KG  P   TY  ++  LC   R
Sbjct: 271 MFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCR 330

Query: 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN 189
           I++A+ LL ++    V       N F +   GR +   A  +Y +M  +G  VP++ +++
Sbjct: 331 IDEAQALLSKVPGPNVVHFNTLVNGFVRN--GRLNEATAF-VYDKMINNGY-VPDVFTFS 386

Query: 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
            L+             E+ ND+   G  P+L++YT+LI G C+K + +EA     EM+ K
Sbjct: 387 TLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTK 446

Query: 250 GLLPQKVTFETLYRGL 265
           G     V +  L   L
Sbjct: 447 GFSLNTVGYNALISAL 462



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 10/173 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI   CK   ++       EMI +G+ P+++T N+L+NG C    +H          
Sbjct: 560 YNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVH---------- 609

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA +   +M  RG  PD+ +++ +++   +  + Q +L+    ++ +GI P   TY++++
Sbjct: 610 NALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLI 669

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQ 174
             LC  G  +DA  LL   V NG  P+  T+N     +  + ++ G    Y Q
Sbjct: 670 CWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNFGKQSNSEGQTITYAQ 722



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 5/196 (2%)

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
           EP   S+++VL V    + P ++ +    M  KG+ P   T+  V+K LC    +++A  
Sbjct: 172 EPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACL 231

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           LL +M ++G  P++  Y         R   + A+KL  +M   G C P+++++N +I  F
Sbjct: 232 LLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMG-CPPDVNTFNTVIYGF 290

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
             LNR+    ++ + +   G  P+  +Y  L+HGLC+  +  EA      ++ K   P  
Sbjct: 291 CRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEA----QALLSKVPGPNV 346

Query: 256 VTFETLYRGLIQSDML 271
           V F TL  G +++  L
Sbjct: 347 VHFNTLVNGFVRNGRL 362



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 104/219 (47%), Gaps = 32/219 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           + SLI+G C+++ ++ A     +M+  GV  N VT+N L++   RR  +  + +      
Sbjct: 490 FNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDML 549

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  +     +F+EM  +G+ P + + +I+++ +  A +  
Sbjct: 550 FRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVH 609

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN--- 153
            +L+ +  M  +G  P + TY+S++  LC  GRI++A  L  ++   G+ P + TYN   
Sbjct: 610 NALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLI 669

Query: 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           C+        DA     LYR + E+G  VPN  ++NIL+
Sbjct: 670 CWLCREGAFDDA--CFLLYRGV-ENGF-VPNDVTWNILV 704



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 2/164 (1%)

Query: 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
           +KG C + + Y  ++  L +    +  + LL +M   G+    E+      +Y GR    
Sbjct: 97  QKGYCHSFSVYYLLIDKLGAAAGFKVIDRLLLQMKEEGIV-FRESLFILIMKYYGRAGLP 155

Query: 167 G-AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
           G A +L   MK    C P+  SYN+++ + +  N   +   ++ D+   G+ P+  ++ +
Sbjct: 156 GQATRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGL 215

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           ++  LC   +   AC    +M + G +P  + ++TL   L + D
Sbjct: 216 VMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRD 259


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 132/290 (45%), Gaps = 28/290 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y +LI+G C    +D A R   EM ++G+ P++ TY +L+NG  +   +  +  F     
Sbjct: 393 YNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEML 452

Query: 57  -----------------EKTIRNAEKVF---DEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                            E  I +    F   +EM   G  PDV ++++ +H   +    +
Sbjct: 453 SKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFE 512

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            + D L  M   G+ P   TY+S++      G +  A E+  EM+  GV PS  TY    
Sbjct: 513 EACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLI 572

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVP-NMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
             +  ++  + A   + +M E    VP N+ +YN +I       RMD   + +++++  G
Sbjct: 573 HAHAAKQMLDLAFMYFSKMLEKS--VPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKG 630

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           + P+  SYT+LI+  C    W+EA + + EM+++ + P   T     + L
Sbjct: 631 ILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNL 680



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 125/276 (45%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI G+C+      A   + EM+ R   P + TYN L+ G+C+             + 
Sbjct: 288 YNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQ----------VT 337

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                F +M      PD+ SF+ +L+ Y R      +    + +K + + PTV TY++++
Sbjct: 338 GVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLI 397

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G ++ A  L  EM   G+ P   TY             + A   + +M   GL 
Sbjct: 398 HGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGL- 456

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+  +YN  I   M +    +   +  ++  +G  PD+ +Y + +H LC++  ++EAC 
Sbjct: 457 KPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACD 516

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
               M+  GL+P  VT+ ++  G +++  LR  R +
Sbjct: 517 LLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREV 552



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 133/285 (46%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + SL+YG+C+   I  A     E+  R + P V+TYN L++G+C    L  + R +K   
Sbjct: 358 FNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKK--- 414

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                  EM  +G+ PD+ +++I+++   +     ++    N M  KG+ P    Y++ +
Sbjct: 415 -------EMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRI 467

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                      A  +  EM+  G  P   TYN F      + +   A  L   M  DGL 
Sbjct: 468 VGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGL- 526

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+  +Y  +I  F+    +   RE++N++   G+ P + +YT+LIH    KQ    A  
Sbjct: 527 IPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFM 586

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           YF +M+EK +    +T+  +  GL  +  +    +   +++E+ I
Sbjct: 587 YFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGI 631



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 127/263 (48%), Gaps = 11/263 (4%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           +MI  G+ P+V   N +L  +          R E  +  A+ V+  M   GI+P V +++
Sbjct: 170 KMIRNGLLPDVKNCNRILRVL----------RDENLLSKAKNVYGMMEQFGIKPTVVTYN 219

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            +L  Y +  +   +L+ L+ M+E+G  P   TY+ +V  L   G +E A+ L+ EM+ +
Sbjct: 220 TMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNS 279

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G+  SA TYN     +  +     A  L  +M  +    P + +YN L+       ++  
Sbjct: 280 GLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMV-NRRAFPTLSTYNTLMYGLCKWVQVTG 338

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
           VR  ++D+  S   PD+ S+  L++G C      EA   F E+  + L+P  +T+ TL  
Sbjct: 339 VRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIH 398

Query: 264 GLIQSDMLRTWRRLKKKLDEESI 286
           GL     L    RLKK++ ++ +
Sbjct: 399 GLCMWGYLDAALRLKKEMTDQGL 421



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 11/252 (4%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N +  A+   G M + G++P VVTYN +L+  C+          E  +  A ++  EM+ 
Sbjct: 194 NLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCK----------EGRVDQALELLSEMQE 243

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           RG  P+  +++++++  S+  + + +   +  M   G+  +  TY+ ++   C  G   +
Sbjct: 244 RGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVE 303

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A +L+ EMV     P+  TYN             G    +  M +     P++ S+N L+
Sbjct: 304 AFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKF-TPDIVSFNSLL 362

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
             +     +     +++++K   L P + +Y  LIHGLC       A +   EM ++GL 
Sbjct: 363 YGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLF 422

Query: 253 PQKVTFETLYRG 264
           P   T+  L  G
Sbjct: 423 PDIFTYTILVNG 434



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI   C +   + A R   EM++R ++P+  T++V L  + R   +H  +  E  I+
Sbjct: 638 YTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQVHAVQCVESLIQ 697

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
           N E   D + VR + P     +++   ++R+  P L
Sbjct: 698 NVE---DNINVRLLRPRK---NVMEENFARSQSPML 727


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 146/298 (48%), Gaps = 16/298 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+ K   ++ A     EM++RG+ P++VTY+ +++ +C+  ++  +E F + + 
Sbjct: 224 YNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMV 283

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N          +G+ PD  +++ +++ YS   Q + ++     M+ + I P V   ++++
Sbjct: 284 N----------KGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLM 333

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+I++A ++   M   G  P   +Y      Y  +        L+  M  DG+ 
Sbjct: 334 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGI- 392

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P+++++N+LI  +     +D    I+N+++  G+ P + +Y  +I  LC   K  +A +
Sbjct: 393 APDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAME 452

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES-----ITFGSEFQN 294
            F +MI++G++P K  +  L +G      L   + L  ++         + FGS   N
Sbjct: 453 KFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINN 510



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 142/323 (43%), Gaps = 61/323 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC---------------R 46
           Y+S+++  CK   +D AE FL +M+ +GV P+  TYN L+ G                 R
Sbjct: 259 YSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMR 318

Query: 47  RASLHPSERFEKT----------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS------ 90
           R S+ P      T          I+ A  VFD M ++G  PDV S++I+L+ Y+      
Sbjct: 319 RQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLV 378

Query: 91  -------------------------RAHQPQLSLDK----LNFMKEKGICPTVATYSSVV 121
                                    +A+     LDK     N M++ G+ P V TY +V+
Sbjct: 379 DMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVI 438

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+++DA E   +M+  GV P    Y+C  + +        A +L  ++  +G+ 
Sbjct: 439 AALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMR 498

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++  +  +I     L R+   + I++     GL PD   Y ML+ G C   K ++A +
Sbjct: 499 L-DIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALR 557

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F  M+  G+ P  V + TL  G
Sbjct: 558 VFDAMVSAGIEPNVVGYGTLVNG 580



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 138/299 (46%), Gaps = 21/299 (7%)

Query: 3   TSLIYGWCKINRIDMA-ERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + L+ G+C+  R D A +  L    E G  P+V +YN+LL  +C +     ++   + + 
Sbjct: 152 SHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMA 211

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               V          PDV +++ V+  + +      + D    M ++GI P + TYSSVV
Sbjct: 212 EGGTV--------CSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVV 263

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC    ++ AE  L +MV  GV P   TYN     Y        A++++++M+   + 
Sbjct: 264 HALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSI- 322

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P++ + N L+G      ++   R++++ +   G  PD+ SYT++++G   K    +   
Sbjct: 323 LPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTD 382

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300
            F  M+  G+ P   TF  L +      M          LD+  I F +E +++  KP+
Sbjct: 383 LFDLMLGDGIAPDIYTFNVLIKAYANCGM----------LDKAMIIF-NEMRDHGVKPH 430



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 142/328 (43%), Gaps = 41/328 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I   C+I ++D A     +MI++GV P+   Y+ L+ G C   SL  ++     I 
Sbjct: 434 YMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIM 493

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           N                         A+ +FD     G+ PD   +++++  Y    + +
Sbjct: 494 NNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKME 553

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   + M   GI P V  Y ++V   C  GRI++   L  EM++ G+ PS   YN   
Sbjct: 554 KALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIII 613

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNR-MDMVREIWNDVKGS 214
                      A   + +M E G+ + N  +Y+I++ G+F   NR  D    ++ +++  
Sbjct: 614 DGLFEAGRTVPAKVKFHEMTESGIAM-NKCTYSIVLRGLFK--NRCFDEAIFLFKELRAM 670

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTW 274
            +  D+ +   +I G+ + ++ +EA   F  +   GL+P  VT+  +   L         
Sbjct: 671 NVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNL--------- 721

Query: 275 RRLKKKLDEESITFGSEFQNYHFKPYRR 302
             LK+ L EE+    S  QN   +P  R
Sbjct: 722 --LKEGLVEEAEDMFSSMQNAGCEPDSR 747



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 112/257 (43%), Gaps = 11/257 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L+ G+C + +++ A R    M+  G+EPNVV Y  L+NG C+             I
Sbjct: 538 VYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGR----------I 587

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                +F EM  +GI+P    ++I++     A +   +  K + M E GI     TYS V
Sbjct: 588 DEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIV 647

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++ L      ++A  L  E+    V     T N         +    A  L+  +   GL
Sbjct: 648 LRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGL 707

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VP   +Y+I+I   +    ++   ++++ ++ +G  PD      ++  L +K +   A 
Sbjct: 708 -VPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAG 766

Query: 241 QYFVEMIEKGLLPQKVT 257
            Y  ++ E+    + +T
Sbjct: 767 AYLSKIDERNFSLEHLT 783



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 28/240 (11%)

Query: 46  RRASLHPSERFEKTIRNAEKVFDEMRVRG---IEPDVTSFSIVLHVYSRAHQ-------P 95
           R  +L P E        A  + DE++ RG   ++ D+  F   L   +RA         P
Sbjct: 41  REGTLRPEE--------AHDLLDELQRRGTPVLDRDLNGF---LAALARAPSSAACGSGP 89

Query: 96  QLSLDKLNFMKEKG-----ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150
            L++   N    +      + PT  TY+ ++ C     R E A    G+++R G+   A 
Sbjct: 90  ALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAI 149

Query: 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210
             +   K +   K  + A+ +      +  CVP++ SYNIL+       +     ++   
Sbjct: 150 IASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRM 209

Query: 211 VK--GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           +   G+   PD+ +Y  +I G  ++    +AC  F EM+++G+ P  VT+ ++   L ++
Sbjct: 210 MAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKA 269


>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
          Length = 410

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 122/268 (45%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI  WC+    + A     EM  RG+  NVV+YN L+ G+CR   L           
Sbjct: 111 YNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLW---------- 160

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A K+ D MR  G  P + +F++++  Y +A +   +L   N MK  G  P+  TY+ ++
Sbjct: 161 DAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLI 220

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C    +  A   L +M   G+ P+  TY      +        A ++   M++ GL 
Sbjct: 221 AGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLE 280

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           V + H+Y +L+        M   R+++  +   G+ P    Y M+I+G   +    +A +
Sbjct: 281 V-DAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALK 339

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
             +EM +KGL+P   ++    R L + D
Sbjct: 340 LIMEMRQKGLIPNSASYGLTIRVLCKDD 367



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 128/263 (48%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L++G+    + +       EM   GVEPN+ TYN L+   CR      +  FE+   
Sbjct: 76  YTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCR------TGEFER--- 126

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +FDEM VRGI  +V S++ ++    R  +   +   L+ M+ +G  P++ T++ +V
Sbjct: 127 -ARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLV 185

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G++ +A     +M   G  PSA TYN     +   +D   A +    MKE GL 
Sbjct: 186 DGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGL- 244

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P   +Y ILI  F   N M    EI   ++ +GL  D  +Y +L+  LC +   K+A +
Sbjct: 245 EPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARK 304

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F  M EKG+ P  V ++ +  G
Sbjct: 305 LFQSMGEKGVEPSNVIYDMMIYG 327



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 133/284 (46%), Gaps = 11/284 (3%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           T+L+ G CK   +  A R   EM   G+ PN VTY  L++G          +R EK    
Sbjct: 42  TALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGY-----FTHGQR-EKGF-- 93

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
              +F+EMR  G+EP++ +++ ++  + R  + + +    + M  +GI   V +Y++++ 
Sbjct: 94  --ALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIA 151

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  G++ DA +LL  M   G  PS  T+N     Y      + A+  + QMK  G   
Sbjct: 152 GLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGF-Q 210

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+  +YN+LI  F     M       +D+K  GL P   +YT+LI     +    +A + 
Sbjct: 211 PSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEI 270

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
              M + GL     T+  L R L     ++  R+L + + E+ +
Sbjct: 271 LAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGV 314



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 106/215 (49%), Gaps = 11/215 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  L+ G+ K  ++  A  F  +M   G +P+ VTYN+L+ G CR           + + 
Sbjct: 181 FNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCR----------ARDMT 230

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +   +M+ RG+EP   +++I++  ++R +    + + L  M++ G+     TY  +V
Sbjct: 231 RANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLV 290

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  G ++DA +L   M   GV PS   Y+     Y     +  A+KL  +M++ GL 
Sbjct: 291 RALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGL- 349

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           +PN  SY + I +    ++      + +D+  +GL
Sbjct: 350 IPNSASYGLTIRVLCKDDKCQEAEALLDDMVRAGL 384


>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Brachypodium distachyon]
          Length = 814

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 137/302 (45%), Gaps = 44/302 (14%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +LI+G C+   +  A   L  M+ +G+E + +TYN+++ G C+          +  I  A
Sbjct: 482 ALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCK----------DSKIEEA 531

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            K+ D+M  +G +PD   F+ ++H Y    + + +L  L  MK +G+ P V +Y +++  
Sbjct: 532 LKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDG 591

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            C    I+ A E L E++  G+ P+A  YN     Y    + +GA+ +   M+  G+   
Sbjct: 592 YCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPT 651

Query: 184 N------MH----------------------------SYNILIGMFMALNRMDMVREIWN 209
           N      MH                             Y I+I     + +MD     + 
Sbjct: 652 NVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFE 711

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           +++   + P+  +YT L++  C+    +EA + F EM+  G++P  V++ TL  G  Q D
Sbjct: 712 EMRSRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTGFSQVD 771

Query: 270 ML 271
            L
Sbjct: 772 SL 773



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 141/301 (46%), Gaps = 21/301 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVE--PNVVTYNVLLNGVCRRASLHPSERFEKT 59
           YTS+I   CK+ ++D   + L ++I  G++     V YN+L++ +C+      S R ++ 
Sbjct: 232 YTSMIKALCKVGKVDDGFKILSDLIHAGLQQSAGAVPYNLLMDALCK------SGRVDEA 285

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           IR   +  +E RV    P + +F I+++   R+ +       L  M+  GI P     + 
Sbjct: 286 IRLKGR-MEESRV---APSMVTFGILINGLKRSDRFGEVGALLREMEGLGITPNEVICNE 341

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++   C  G   +A  L  EMV   +  +A TYN   +      +   A ++  +M   G
Sbjct: 342 LIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEMLSTG 401

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           + + +    +++ G+     R++ V  + +++   G+ P+    T     LC+ ++ +EA
Sbjct: 402 MTIHSGLFNSVVAGLLQRTGRLESVVRLISEMVKRGMKPNDALMTACTKQLCQGRRHQEA 461

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQ-------SDMLRTWRRLKKKLDEESITFGSEF 292
              +++M+EKGL     T   L  GL +       +++LRT   + K ++ ++IT+    
Sbjct: 462 VGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTM--VNKGMELDNITYNIMI 519

Query: 293 Q 293
           Q
Sbjct: 520 Q 520



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 127/290 (43%), Gaps = 12/290 (4%)

Query: 1   MYTSLIYGWC-KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT 59
           ++ S++ G   +  R++   R + EM++RG++PN          +C+        R ++ 
Sbjct: 408 LFNSVVAGLLQRTGRLESVVRLISEMVKRGMKPNDALMTACTKQLCQ------GRRHQEA 461

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +     ++ +M  +G+  ++ + + ++H        + + + L  M  KG+     TY+ 
Sbjct: 462 V----GIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNI 517

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +++  C   +IE+A +L  +M+R G  P A  +N     Y        A+ L  QMK +G
Sbjct: 518 MIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEG 577

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           +  P++ SY  +I  +     +    E  N++   GL P+   Y  LI G         A
Sbjct: 578 V-QPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGA 636

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
                 M   G+ P  VT+ +L   +  + ++   + + ++  + SI  G
Sbjct: 637 IGVLDTMESIGIQPTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVG 686



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 4/239 (1%)

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE-KGICPTVATY 117
           ++R A   F  +  R   P V + + +L   +R      +    + M++ K + P   +Y
Sbjct: 173 SLRLAVDAFHVLSSRRASPSVKTCNALLEALARTGNLGATCKVFDEMRDCKTVTPNGYSY 232

Query: 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET--YNCFFKEYRGRKDANGAMKLYRQM 175
           +S++K LC  G+++D  ++L +++  G+  SA    YN            + A++L  +M
Sbjct: 233 TSMIKALCKVGKVDDGFKILSDLIHAGLQQSAGAVPYNLLMDALCKSGRVDEAIRLKGRM 292

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
           +E  +  P+M ++ ILI      +R   V  +  +++G G+ P+      LI   C K  
Sbjct: 293 EESRV-APSMVTFGILINGLKRSDRFGEVGALLREMEGLGITPNEVICNELIDWHCRKGH 351

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           + EA + F EM+ K +    VT+  + R L +   +    R+ +++    +T  S   N
Sbjct: 352 FTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEMLSTGMTIHSGLFN 410


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 136/310 (43%), Gaps = 26/310 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYN----------------VLLNGVC 45
           YT+LI G C    + +A      M   GV PN VTYN                V+LN + 
Sbjct: 528 YTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMG 587

Query: 46  RRASLHPSERFEKTIRN---------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           R         + + I+          A  V + M  RG   ++ +++ ++  Y  +    
Sbjct: 588 RNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTT 647

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L  L+ M++ G  P   +Y+ ++   C   ++E A  L  EMV +G+CP+  TY    
Sbjct: 648 SALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALI 707

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y   +  + A  L   MK  G C PN+ +YN+LI      N      E+   +   G+
Sbjct: 708 DGYCKDEKLDTATSLLEHMKRSG-CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGI 766

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            P++ +YT +I GLC+      A + F +MIE+G LP  +T+ +L R L Q   +     
Sbjct: 767 FPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAEN 826

Query: 277 LKKKLDEESI 286
           L  +L+   +
Sbjct: 827 LFAELERHGL 836



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 132/267 (49%), Gaps = 11/267 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  +I G+C +     A   +  M++RG   N+VTYN ++ G C   +            
Sbjct: 598 YNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGN----------TT 647

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++ D MR  G +PD  S++ ++  + +  + + +    N M + G+CP   TY++++
Sbjct: 648 SALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALI 707

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   +++ A  LL  M R+G  P+ +TYN        + + +GA +L + M E+G+ 
Sbjct: 708 DGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGI- 766

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  +I          +  E++N +   G  P+L +Y+ LI  L ++ K +EA  
Sbjct: 767 FPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAEN 826

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS 268
            F E+   GL+P ++T+  +    I S
Sbjct: 827 LFAELERHGLIPDEITYVKMIEAYIMS 853



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 139/301 (46%), Gaps = 26/301 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC------------RRAS 49
           YTS+I G C+ + +D A +   +M + G EPN VTY+ L+NG+C            R   
Sbjct: 423 YTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI 482

Query: 50  LHPSERFEKTI-------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           LH       T               +A ++F +M+ +G EP+V +++ ++     +   +
Sbjct: 483 LHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLK 542

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           +++   + M   G+ P   TY++++  L    RI+ A  +L  M RNG+  +  TYN   
Sbjct: 543 VAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMI 602

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           K Y    D   AM +   M + G    N+ +YN +I  +           I + ++  G 
Sbjct: 603 KGYCILGDPKKAMLVMNNMLQRGHSA-NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC 661

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276
            PD  SYT LI G C+  K + A   F EM++ GL P +VT+  L  G  + + L T   
Sbjct: 662 KPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATS 721

Query: 277 L 277
           L
Sbjct: 722 L 722



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 116/240 (48%), Gaps = 11/240 (4%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M+  GV+PN++ YN ++N +C+  ++  +E   K +  +E          + PD  +++ 
Sbjct: 376 MLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESE----------MSPDTFTYTS 425

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           ++  + R H    +L   N M ++G  P   TYS+++  LC  GR+ +A +L+ EM+ +G
Sbjct: 426 MILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG 485

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           + P+A T                A +L+  MK  G C PN+++Y  LI        + + 
Sbjct: 486 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKG-CEPNVYTYTALISGLCVSGLLKVA 544

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             +++ +   G+ P+  +Y  LI+ L E ++ K A      M   GL    VT+  + +G
Sbjct: 545 IGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKG 604



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 121/268 (45%), Gaps = 11/268 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y ++I   CK   +  AE  + ++ E  + P+  TY  ++ G CR+  L          
Sbjct: 387 IYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD--------- 437

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A +VF++M   G EP+  ++S +++    + +   + D +  M   GI PT  T +  
Sbjct: 438 -SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGP 496

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G  EDA  L  +M   G  P+  TY               A+ L+ +M  DG+
Sbjct: 497 IIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGV 556

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN  +YN LI + +   R+     + N +  +GL  ++ +Y  +I G C     K+A 
Sbjct: 557 -FPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAM 615

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
                M+++G     VT+ T+ +G   S
Sbjct: 616 LVMNNMLQRGHSANLVTYNTIIKGYCDS 643



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 135/360 (37%), Gaps = 105/360 (29%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            YT+LI G+CK  ++D A   L  M   G  PNV TYNVL++G+ +          +    
Sbjct: 703  YTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTK----------QNNFS 752

Query: 62   NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             AE++   M   GI P+V +++ ++    +     L+L+  N M E+G  P + TYSS++
Sbjct: 753  GAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLI 812

Query: 122  KCLCSCGRIEDAEEL-----------------------------------LGEMVRNGVC 146
            + L   G++E+AE L                                   LG M++ G  
Sbjct: 813  RALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQ 872

Query: 147  PSAETY--------------------------NCFFKEYRGRKDANGAM----------- 169
            P+  TY                          NC F      +DA   M           
Sbjct: 873  PTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGL 932

Query: 170  ----------------------KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREI 207
                                  +L   M   GLC P+  +YN L+   + +  +D+   +
Sbjct: 933  SVQVQNALVSNLSTAGRWFEANELLGSMISQGLC-PDQEAYNSLLCSLLRVRNVDLAMGV 991

Query: 208  WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            +  +   G    L+ Y  LI  LC+  + KEA   F  M+ +   P  V    L  GL++
Sbjct: 992  FKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLR 1051



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 113/238 (47%), Gaps = 5/238 (2%)

Query: 49  SLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK 108
           S H  E   +T+       D +   G+   + ++S +L   SR       +D+ + M  +
Sbjct: 324 SCHSKEAMARTM----SFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE 379

Query: 109 GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGA 168
           G+ P +  Y++V+  LC  G + DAE ++ ++  + + P   TY      +  + D + A
Sbjct: 380 GVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSA 439

Query: 169 MKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228
           ++++ QM ++G C PN  +Y+ LI       R++   ++  ++   G+ P   + T  I 
Sbjct: 440 LQVFNQMAKEG-CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPII 498

Query: 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
            LC+   +++A + FV+M  KG  P   T+  L  GL  S +L+    L  ++  + +
Sbjct: 499 ALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGV 556



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 113/251 (45%), Gaps = 31/251 (12%)

Query: 2    YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
            Y  +I  +    +++ A  FLG MI+ G +P + TY VL+ G                ++
Sbjct: 843  YVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKG----------------LK 886

Query: 62   NAEKVFDEMRVRGIEPDVT---SFSIVLHVYSRAHQPQLSLDKLNFMK-EKGICPTVATY 117
            N E +  + R+  + PDV    SF      Y    Q  +S+      + + G+  +V   
Sbjct: 887  N-EYLLADQRLAAL-PDVVPNCSFG-----YQTTDQDAVSVMSAKLAELDPGL--SVQVQ 937

Query: 118  SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
            +++V  L + GR  +A ELLG M+  G+CP  E YN         ++ + AM +++ M  
Sbjct: 938  NALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMST 997

Query: 178  DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
             G C  +++ Y  LI     L+R    R  + ++      PD     +LI GL  +  +K
Sbjct: 998  QG-CEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLL-RDGYK 1055

Query: 238  EACQYFVEMIE 248
            + C  F+ ++E
Sbjct: 1056 DLCMEFLHIME 1066


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 135/276 (48%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I G CK   +D A+     MI++GV PN  TY  L++G         + ++++ + 
Sbjct: 205 YTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYL------STGKWKEVV- 257

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              ++  EM   G++PD   ++++L    +  +   + +  + +  KGI P V  Y  ++
Sbjct: 258 ---QMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILL 314

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               + G + +    L  MVRNGV P    +N  F  Y  +   + AM ++ +M++  L 
Sbjct: 315 HGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLS 374

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + +Y  LI     L R+D     +N +   G+ PD+  ++ L++GLC   KW++A +
Sbjct: 375 -PGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEK 433

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F E++++G+      F  L   L +   +   +RL
Sbjct: 434 LFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRL 469



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 127/267 (47%), Gaps = 11/267 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L++G+     +     FL  M+  GV P+   +N++ N   ++A           I
Sbjct: 309 IYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKA----------MI 358

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  +FD+MR + + P V ++  ++    +  +   ++ K N M  +G+ P +  +SS+
Sbjct: 359 DEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSL 418

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           V  LC+  + E AE+L  E++  G+  +A  +N              A +L   M    +
Sbjct: 419 VYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDV 478

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ SYN L+       R+D   ++ + +   GL PD  +Y  L+HG C+ ++  +A 
Sbjct: 479 -RPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAY 537

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQ 267
             F EM+ KGL P  VT+ T+  GL Q
Sbjct: 538 SLFREMLMKGLTPGVVTYNTILHGLFQ 564



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 148/328 (45%), Gaps = 28/328 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF---- 56
           +++SL+YG C +++ + AE+   E++++G+  N   +N+L+  +CR   +  ++R     
Sbjct: 414 VFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLM 473

Query: 57  ---------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                   I  A K+ D M   G++PD  +++ +LH Y +A + 
Sbjct: 474 LRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRI 533

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +      M  KG+ P V TY++++  L   GR  +A+EL   M+ N       TY   
Sbjct: 534 DDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIYTYTII 593

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                     + A K+++ +    L + ++ + NI+IG  +   R +   +++  +   G
Sbjct: 594 LNGLCRNNFVDEAFKMFQSLCSKDLQL-DIFTINIMIGALLKGGRKEDAMDLFATISAYG 652

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI-QSDMLRTW 274
           L PD+++Y ++   L ++   +E  + F  M E G  P       L R L+ + D+ R  
Sbjct: 653 LVPDVETYRLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDIGRAG 712

Query: 275 RRLKKKLDEESITFGSEFQNYHFKPYRR 302
             L  KLDE++ +  +   +     Y R
Sbjct: 713 VYL-SKLDEKNFSLEASTTSMLISIYSR 739



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 128/296 (43%), Gaps = 14/296 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGV---EPNVVTYNVLLNGVCRRASLHPSERFEK 58
           Y  L+ G C   R + A   +  M + G     PNVVTY  +++G+C+           +
Sbjct: 167 YNILLKGLCNEKRAEEALELMHMMADDGDGSHTPNVVTYTTVIDGLCK----------AQ 216

Query: 59  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
            +  A+ VF  M  +G+ P+  +++ ++H Y    + +  +  L  M   G+ P    Y+
Sbjct: 217 MVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYA 276

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            ++  LC  GR  +A  +   ++R G+ P    Y      Y      +        M  +
Sbjct: 277 VLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRN 336

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+  P+ H +NI+   +     +D    I++ ++   L P + +Y  LI  LC+  +  +
Sbjct: 337 GVS-PDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDD 395

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
           A   F +MI +G+ P    F +L  GL   D      +L  ++ ++ I   + F N
Sbjct: 396 AVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFN 451



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 108/255 (42%), Gaps = 16/255 (6%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGV----CRRASLHPSERFEKTIRNAEKVFDEM 70
           +D A +   EM+      +V T+N LL  V    C  AS      F + IR       E 
Sbjct: 32  LDDALKLFDEMLTYARPASVRTFNRLLTVVSRARCSSASELVVSLFNRMIR-------EC 84

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG-ICPTVATYSSVVKCLCSCGR 129
            V+ + P   +++I++  + R  + +        + + G        +  ++K LC   R
Sbjct: 85  SVK-VAPSSCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLLKGLCDAKR 143

Query: 130 IEDAEE-LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG--LCVPNMH 186
           +++A + LL  M   G   +  +YN   K     K A  A++L   M +DG     PN+ 
Sbjct: 144 VDEATDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDGDGSHTPNVV 203

Query: 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
           +Y  +I        +D  + ++  +   G+ P+  +YT LIHG     KWKE  Q   EM
Sbjct: 204 TYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEM 263

Query: 247 IEKGLLPQKVTFETL 261
              GL P  V +  L
Sbjct: 264 STHGLQPDCVIYAVL 278


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 152/340 (44%), Gaps = 61/340 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + S +  +CK+   D A++ L EM ERG   N VTYNVL+ G+CR  ++  +  F+K + 
Sbjct: 225 HGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 284

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +                         A+ + DEM    ++P+V  ++ ++  + R     
Sbjct: 285 DYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNAD 344

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   +  M   G+ P   TY ++V+ LC  G+++ A  LL +MVR+   P   TYN   
Sbjct: 345 EAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLII 404

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI-------------------------- 190
           + +        A +L  +M+  G+  PN+++Y+I                          
Sbjct: 405 EGHFRHHSKKDAFRLLSEMENAGIS-PNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGL 463

Query: 191 ---------LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
                    LI  +     + +  EI++ +    + PDL  Y  LI GL +  + +E+ +
Sbjct: 464 KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTK 523

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           YF +M E+GLLP + T+  L  G +++  L +  +L +++
Sbjct: 524 YFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRM 563



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 142/285 (49%), Gaps = 14/285 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL-HPSERFEKT 59
           +Y +LI G+ +    D A + + EM+  GV+PN +TY+ L+ G+C+   +   S   ++ 
Sbjct: 329 VYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQM 388

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +R++ +           PD  ++++++  + R H  + +   L+ M+  GI P V TYS 
Sbjct: 389 VRDSHR-----------PDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSI 437

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  LC  G  E A +LL EM   G+ P+A  Y      Y    + + A +++ +M +  
Sbjct: 438 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 497

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           + +P+++ YN LI     + R++   + +  ++  GL P+  +Y+ LIHG  +    + A
Sbjct: 498 V-LPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESA 556

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKKKLDE 283
            Q    M++ GL P  V +  L     +SD + +     K  LD+
Sbjct: 557 EQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQ 601



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 136/294 (46%), Gaps = 16/294 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I+G C+    + A   L EM  +G++PN   Y  L++G CR          E  + 
Sbjct: 435 YSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCR----------EGNVS 484

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++FD+M    + PD+  ++ ++   S+  + + S      M+E+G+ P   TYS ++
Sbjct: 485 LACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLI 544

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G +E AE+L+  M+  G+ P+   Y    + Y    D       ++ M + G+ 
Sbjct: 545 HGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVM 604

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N   Y ILI    +   M+    + + ++ +G  PD+  Y+ LI GLC+    ++A  
Sbjct: 605 LDN-RIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFG 663

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR-----LKKKLDEESITFGS 290
              EM +KG+ P  V +  L  GL +S  +   R      L K L    +T+ S
Sbjct: 664 ILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTS 717



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 144/356 (40%), Gaps = 64/356 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y SLI+G  K+ R++ + ++  +M ERG+ PN  TY+ L++G  +   L  +E+      
Sbjct: 505 YNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRML 564

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  I      F  M  +G+  D   + I++H  S +   +
Sbjct: 565 DTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNME 624

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L+ +++ G  P V  YSS++  LC     E A  +L EM + GV P+   YN   
Sbjct: 625 AAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALI 684

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                  D + A  ++  +   GL VPN  +Y  LI     +  +     ++N++  +G+
Sbjct: 685 DGLCKSGDISYARNVFNSILAKGL-VPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGI 743

Query: 217 GPD----------------------------------LDSYTMLIHGLCEKQKWKEACQY 242
            PD                                  + S+  L+ G C++ K +E  + 
Sbjct: 744 TPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKL 803

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
              ++ +GL+P  +T E +  GL ++  L     +  +L +++    SE    HF 
Sbjct: 804 LHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKT----SESAARHFS 855



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 119/267 (44%), Gaps = 12/267 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI+       ++ A R L  + + G  P+V  Y+ L++G+C+ A            
Sbjct: 609 IYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADR---------- 658

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + DEM  +G++P++  ++ ++    ++     + +  N +  KG+ P   TY+S+
Sbjct: 659 EKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSL 718

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G I +A  L  EM+  G+ P A  Y+          D   AM L  +M   G 
Sbjct: 719 IDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH 778

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
              ++ S+N L+  F    +M    ++ + + G GL P+  +   +I GL E  K  E  
Sbjct: 779 A--SISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVH 836

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQ 267
             FVE+ +K        F +L+  +I 
Sbjct: 837 TIFVELQQKTSESAARHFSSLFMDMIN 863



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 123/316 (38%), Gaps = 66/316 (20%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+SLI G CK    + A   L EM ++GV+PN+V YN L++G+C+             I
Sbjct: 644 VYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGD----------I 693

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  VF+ +  +G+ P+  +++ ++    +      +    N M   GI P    YS +
Sbjct: 694 SYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL 753

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
                S G +E A  L+ EM   G   S  ++N     +  R      +KL   +   GL
Sbjct: 754 TTGCSSAGDLEQAMFLIEEMFLRGHA-SISSFNNLVDGFCKRGKMQETLKLLHVIMGRGL 812

Query: 181 CVPNMHSY-NILIGM------------FMALNR--------------MDMVRE------- 206
            VPN  +  NI+ G+            F+ L +              MDM+ +       
Sbjct: 813 -VPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDV 871

Query: 207 ------------------IWNDVKGSGLGP-DLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
                             +  DV  +   P    SY  ++  LC K K  EA     EM 
Sbjct: 872 VDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMD 931

Query: 248 EKG-LLPQKVTFETLY 262
           ++G L P  V    ++
Sbjct: 932 KRGNLQPTLVALLGIF 947



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 116/306 (37%), Gaps = 21/306 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNV---------LLNGVCRRASLHP 52
           +  L    C  +  ++A   L +MI     P VV  ++            G  RR   + 
Sbjct: 125 FAHLAMSLCAGSLFNLANGLLIKMIRAYPSPPVVLASIHRALSDSGHPFAGGARRPRGYL 184

Query: 53  SERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI-----------VLHVYSRAHQPQLSLDK 101
            E +E   R   +  DE    G +  V   ++            L  Y +  +   +   
Sbjct: 185 QEVWEGAGRRGGRPDDERSGHGSQHSVLQRAVEGSAARGRHGSALEAYCKVREFDTAKKV 244

Query: 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
           L  M+E+G      TY+ ++  LC  G +E+A     +M   G+ P   TY         
Sbjct: 245 LVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCK 304

Query: 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221
            + +N A  L  +M    L  PN+  Y  LI  FM     D   ++  ++  +G+ P+  
Sbjct: 305 SRRSNEAKALLDEMSCAEL-KPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKI 363

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +Y  L+ GLC+  +   A     +M+     P  +T+  +  G  +    +   RL  ++
Sbjct: 364 TYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEM 423

Query: 282 DEESIT 287
           +   I+
Sbjct: 424 ENAGIS 429


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 142/312 (45%), Gaps = 27/312 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKTI 60
           +T+LI G CK   I  A   L EM+ RG +PNV T+  L++G+C++     + R F K +
Sbjct: 297 FTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLV 356

Query: 61  RN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           R+                         AE +   M+ +G+ P+  +++ ++  + +    
Sbjct: 357 RSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNF 416

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             + + ++ M ++G  P + TY++++  LC  G +++A  LL ++  +G+     TY   
Sbjct: 417 VRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTIL 476

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +  + D N ++  + +M + G   P++HSY  LI  F    +M     ++ +    G
Sbjct: 477 MSVHCRQADTNRSLVFFNKMLKVGF-TPDIHSYTTLISXFCRQKQMKESERLFEEAVSLG 535

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           L P   +YT +I G C       A + F  M   G  P  +T+  L  GL +   L   R
Sbjct: 536 LIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDAR 595

Query: 276 RLKKKLDEESIT 287
            L   + ++ ++
Sbjct: 596 NLYDAMMDKGLS 607



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 119/238 (50%), Gaps = 11/238 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G CK+     A   +  M + G  PN+ TYN +++G+C++ SL  + R      
Sbjct: 403 YTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYR------ 456

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + +++ V G++ D  +++I++ V+ R      SL   N M + G  P + +Y++++
Sbjct: 457 ----LLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLI 512

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   +++++E L  E V  G+ P+ +TY      Y    + + A+KL+++M   G C
Sbjct: 513 SXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHG-C 571

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            P+  +Y  LI      +++D  R +++ +   GL P   +   L +  C+K     A
Sbjct: 572 APDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTA 629



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 150/319 (47%), Gaps = 32/319 (10%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTIR 61
           T +I  +C+   ++    +  +M+E G+ PNV+ +  L+NG+C++ S+  + E  E+ +R
Sbjct: 263 TLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVR 322

Query: 62  NA---------------------EKVF----DEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  EK F      +R  G +P+V +++ +++ Y +  +  
Sbjct: 323 RGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLN 382

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L+ M+E+G+ P   TY++++   C  G    A EL+  M + G  P+  TYN   
Sbjct: 383 RAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAII 442

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                +   + A +L  ++   GL    + +Y IL+ +       +     +N +   G 
Sbjct: 443 DGLCKKGSLDEAYRLLNKVSVHGLQADGV-TYTILMSVHCRQADTNRSLVFFNKMLKVGF 501

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLR 272
            PD+ SYT LI   C +++ KE+ + F E +  GL+P K T+ ++  G  +    S  ++
Sbjct: 502 TPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVK 561

Query: 273 TWRRLKKK-LDEESITFGS 290
            ++R+       +SIT+G+
Sbjct: 562 LFQRMSNHGCAPDSITYGA 580



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 122/268 (45%), Gaps = 10/268 (3%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           +++AE    EM +RGV P+ V++ +++   C              +  AEK  + M  RG
Sbjct: 205 VEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGR----------VLEAEKWLNAMVERG 254

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
              D  + ++++  + +       +     M E G+ P V  +++++  LC  G I+ A 
Sbjct: 255 FIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAF 314

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           ELL EMVR G  P+  T+         +     A +L+ ++       PN+H+Y  +I  
Sbjct: 315 ELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMING 374

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
           +   ++++    + + ++  GL P+ ++YT LI G C+   +  A +    M ++G  P 
Sbjct: 375 YCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPN 434

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKKLD 282
             T+  +  GL +   L    RL  K+ 
Sbjct: 435 IYTYNAIIDGLCKKGSLDEAYRLLNKVS 462



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 91/201 (45%), Gaps = 25/201 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y ++I G CK   +D A R L ++   G++ + VTY +L++  CR+A  + S  F     
Sbjct: 438 YNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKML 497

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +K ++ +E++F+E    G+ P   +++ ++  Y R     
Sbjct: 498 KVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTS 557

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           L++     M   G  P   TY +++  LC   +++DA  L   M+  G+ P   T     
Sbjct: 558 LAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLA 617

Query: 157 KEYRGRKDANGAMKLYRQMKE 177
            EY  + D++ A+ +  ++++
Sbjct: 618 YEYCKKDDSSTAINVLDRLEK 638



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 7/180 (3%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M+ +G+  +  T + V+      G +E AE +  EM + GV P   ++            
Sbjct: 180 MQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGR 239

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA---LNRMDMVREIWNDVKGSGLGPDLD 221
              A K    M E G  V N  +  ++I  F     +NR+  V   W  V+  GL P++ 
Sbjct: 240 VLEAEKWLNAMVERGFIVDNA-TCTLIIDAFCQKGYVNRV--VGYFWKMVE-MGLAPNVI 295

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           ++T LI+GLC++   K+A +   EM+ +G  P   T  TL  GL +        RL  KL
Sbjct: 296 NFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKL 355


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 142/312 (45%), Gaps = 27/312 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKTI 60
           +T+LI G CK   I  A   L EM+ RG +PNV T+  L++G+C++     + R F K +
Sbjct: 297 FTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLV 356

Query: 61  RN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
           R+                         AE +   M+ +G+ P+  +++ ++  + +    
Sbjct: 357 RSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNF 416

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             + + ++ M ++G  P + TY++++  LC  G +++A  LL ++  +G+     TY   
Sbjct: 417 VRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTIL 476

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
              +  + D N ++  + +M + G   P++HSY  LI  F    +M     ++ +    G
Sbjct: 477 MSVHCRQADTNRSLVFFNKMLKVGF-TPDIHSYTTLISTFCRQKQMKESERLFEEAVSLG 535

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           L P   +YT +I G C       A + F  M   G  P  +T+  L  GL +   L   R
Sbjct: 536 LIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDAR 595

Query: 276 RLKKKLDEESIT 287
            L   + ++ ++
Sbjct: 596 NLYDAMMDKGLS 607



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 119/238 (50%), Gaps = 11/238 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G CK+     A   +  M + G  PN+ TYN +++G+C++ SL  + R      
Sbjct: 403 YTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYR------ 456

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               + +++ V G++ D  +++I++ V+ R      SL   N M + G  P + +Y++++
Sbjct: 457 ----LLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLI 512

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C   +++++E L  E V  G+ P+ +TY      Y    + + A+KL+++M   G C
Sbjct: 513 STFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHG-C 571

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            P+  +Y  LI      +++D  R +++ +   GL P   +   L +  C+K     A
Sbjct: 572 APDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTA 629



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 150/319 (47%), Gaps = 32/319 (10%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTIR 61
           T +I  +C+   ++    +  +M+E G+ PNV+ +  L+NG+C++ S+  + E  E+ +R
Sbjct: 263 TLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVR 322

Query: 62  NA---------------------EKVF----DEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  EK F      +R  G +P+V +++ +++ Y +  +  
Sbjct: 323 RGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLN 382

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L+ M+E+G+ P   TY++++   C  G    A EL+  M + G  P+  TYN   
Sbjct: 383 RAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAII 442

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
                +   + A +L  ++   GL    + +Y IL+ +       +     +N +   G 
Sbjct: 443 DGLCKKGSLDEAYRLLNKVSVHGLQADGV-TYTILMSVHCRQADTNRSLVFFNKMLKVGF 501

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLR 272
            PD+ SYT LI   C +++ KE+ + F E +  GL+P K T+ ++  G  +    S  ++
Sbjct: 502 TPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVK 561

Query: 273 TWRRLKKK-LDEESITFGS 290
            ++R+       +SIT+G+
Sbjct: 562 LFQRMSNHGCAPDSITYGA 580



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 123/268 (45%), Gaps = 10/268 (3%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           +++AE    EM +RGV P+ V++ +++   C    +  +ER+           + M  RG
Sbjct: 205 VEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAERW----------LNAMVERG 254

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
              D  + ++++  + +       +     M E G+ P V  +++++  LC  G I+ A 
Sbjct: 255 FIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAF 314

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
           ELL EMVR G  P+  T+         +     A +L+ ++       PN+H+Y  +I  
Sbjct: 315 ELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMING 374

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
           +   ++++    + + ++  GL P+ ++YT LI G C+   +  A +    M ++G  P 
Sbjct: 375 YCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPN 434

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKKLD 282
             T+  +  GL +   L    RL  K+ 
Sbjct: 435 IYTYNAIIDGLCKKGSLDEAYRLLNKVS 462



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 91/201 (45%), Gaps = 25/201 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           Y ++I G CK   +D A R L ++   G++ + VTY +L++  CR+A  + S  F     
Sbjct: 438 YNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKML 497

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +K ++ +E++F+E    G+ P   +++ ++  Y R     
Sbjct: 498 KVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTS 557

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
           L++     M   G  P   TY +++  LC   +++DA  L   M+  G+ P   T     
Sbjct: 558 LAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLA 617

Query: 157 KEYRGRKDANGAMKLYRQMKE 177
            EY  + D++ A+ +  ++++
Sbjct: 618 YEYCKKDDSSTAINVLDRLEK 638



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 7/180 (3%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M+ +G+ P+  T + V+      G +E AE +  EM + GV P   ++            
Sbjct: 180 MQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGR 239

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA---LNRMDMVREIWNDVKGSGLGPDLD 221
              A +    M E G  V N  +  ++I  F     +NR+  V   W  V+  GL P++ 
Sbjct: 240 VLEAERWLNAMVERGFIVDNA-TCTLIIDAFCQKGYVNRV--VGYFWKMVE-MGLAPNVI 295

Query: 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           ++T LI+GLC++   K+A +   EM+ +G  P   T  TL  GL +        RL  KL
Sbjct: 296 NFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKL 355



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 1/145 (0%)

Query: 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187
           G++++A  ++ EM   G+ PS +T NC      G      A  ++ +M + G+  P+  S
Sbjct: 168 GKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVS-PDCVS 226

Query: 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247
           + +++     + R+       N +   G   D  + T++I   C+K        YF +M+
Sbjct: 227 FKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMV 286

Query: 248 EKGLLPQKVTFETLYRGLIQSDMLR 272
           E GL P  + F  L  GL +   ++
Sbjct: 287 EMGLAPNVINFTALINGLCKQGSIK 311


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 143/303 (47%), Gaps = 18/303 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  L+    K  R+D       +M+  GV P   T+NVL+  +C    L          
Sbjct: 23  LYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLD--------- 73

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A ++FD+M  +G EP+  SF I++  Y RA      L+ L  M+  G  P    Y+++
Sbjct: 74  -DARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTL 132

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED-- 178
           +   C  G+ +DAE+L+ EM ++G+ P   T+N              A +++R M+ D  
Sbjct: 133 ISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEV 192

Query: 179 -GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
            GL  PN+ +YN+++G F     ++  R ++  +K S    + +SY + + GL    K  
Sbjct: 193 LGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLL 252

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE-----ESITFGSEF 292
           EA     EM++ G+ P   ++  +  GL ++ +L   R L + +       +++T+ +  
Sbjct: 253 EAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLL 312

Query: 293 QNY 295
             Y
Sbjct: 313 HGY 315



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 133/293 (45%), Gaps = 40/293 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L++G+C   ++  A   L EM+  G  PN  T N+LL  + +          E  I 
Sbjct: 308 YTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWK----------EGRIS 357

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC---------- 111
            AE++  +M  +G   D  + +IV+       +   +++ +N M   G            
Sbjct: 358 EAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYI 417

Query: 112 -------------PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158
                        P + +YS+++  LC  GR+ +A++   EM+   + P +  Y+ F   
Sbjct: 418 GLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHS 477

Query: 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW---NDVKGSG 215
           +      + A ++ + M++ G C   + +YN LI   M L   + + EI+   ++++  G
Sbjct: 478 FCKEGKISSAFRVLKDMEKKG-CNKTLQTYNSLI---MGLGSKNQIFEIYGLIDEMRERG 533

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           + PD+  Y  ++  LCE  + K+A     EM++KG+ P   +F  L +   ++
Sbjct: 534 VSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKA 586



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 149/371 (40%), Gaps = 88/371 (23%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGV------------------------------ 30
           +Y +LI  +CK  + D AE+ + EM + G+                              
Sbjct: 128 VYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDM 187

Query: 31  ---------EPNVVTYNVLLNGVCRRASLHPSER-FEK---------------------- 58
                    +PN++TYN++L G C+   L  +   FEK                      
Sbjct: 188 QIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVR 247

Query: 59  --TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
              +  A+ V  EM   G+EP+V S++IV+    +      +   +  M   G+ P   T
Sbjct: 248 IGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVT 307

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
           Y++++   C  G++ +A  +L EM+R+G  P+  T N            + A +L ++M 
Sbjct: 308 YTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMN 367

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV---KGSGLG---------------- 217
           E G  +  + + NI+I       ++D   EI N +     + LG                
Sbjct: 368 EKGYVIDTV-TCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSR 426

Query: 218 ----PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT 273
               PDL SY+ +I GLC+  +  EA + F+EM+ K L P    ++       +   + +
Sbjct: 427 KKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISS 486

Query: 274 WRRLKKKLDEE 284
             R+ K ++++
Sbjct: 487 AFRVLKDMEKK 497



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 122/286 (42%), Gaps = 32/286 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y   + G  +I ++  A+  L EM++ G+EPNV +YN++++G+C+   L           
Sbjct: 238 YNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLF---------- 287

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +   M   G+ PD  +++ +LH Y    +   + + L  M   G  P   T + ++
Sbjct: 288 DARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILL 347

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
             L   GRI +AEELL +M   G      T N            + A+++   M   G  
Sbjct: 348 YSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSA 407

Query: 181 ---------------------CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
                                C+P++ SY+ +I       R+   ++ + ++ G  L PD
Sbjct: 408 ALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPD 467

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
              Y + IH  C++ K   A +   +M +KG      T+ +L  GL
Sbjct: 468 SAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGL 513



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 122/264 (46%), Gaps = 12/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+++I G CK  R+  A++   EM+ + ++P+   Y+V ++  C+          E  I 
Sbjct: 436 YSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCK----------EGKIS 485

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A +V  +M  +G    + +++ ++      +Q       ++ M+E+G+ P V+ Y++V+
Sbjct: 486 SAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVL 545

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GR++DA  +L EM++ G+ P+  +++   K +    D +   +++       +C
Sbjct: 546 SSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEIALN--VC 603

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
                 Y++     +    +   +E++              Y  LI  LC+ +K  +A  
Sbjct: 604 GHKEALYSLTFNELLVGGEVVKAKELFETALDRSFDVGNFLYKDLIDHLCKDEKLDDASG 663

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
              ++I+KG      +F  +  GL
Sbjct: 664 ILHKLIDKGYWFDPASFMPVIDGL 687



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 116/260 (44%), Gaps = 17/260 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y   I+ +CK  +I  A R L +M ++G    + TYN L+ G+  +  +     FE   
Sbjct: 470 IYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQI-----FE--- 521

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                + DEMR RG+ PDV+ ++ VL       + + +   L+ M +KGI P ++++S +
Sbjct: 522 --IYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSIL 579

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAET-YNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +K  C        +E+  E+  N VC   E  Y+  F E     +   A +L+    +  
Sbjct: 580 IKAFCKACDFSAVDEIF-EIALN-VCGHKEALYSLTFNELLVGGEVVKAKELFETALDRS 637

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE---KQKW 236
             V N   Y  LI       ++D    I + +   G   D  S+  +I GL +   K + 
Sbjct: 638 FDVGNFL-YKDLIDHLCKDEKLDDASGILHKLIDKGYWFDPASFMPVIDGLGKRGNKHEA 696

Query: 237 KEACQYFVEMIEKGLLPQKV 256
            E  +  +EM  +G +  KV
Sbjct: 697 DELAEKMMEMASEGKVKNKV 716



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 1/166 (0%)

Query: 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171
           P++  Y+ +++     GR++    L  +MV +GV P   T+N            + A +L
Sbjct: 19  PSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDAREL 78

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
           + +M E G C PN +S+ IL+  +          E+  +++  G  P+   Y  LI   C
Sbjct: 79  FDKMPEKG-CEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFC 137

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           ++ K  +A +   EM + GL P  VTF      L  S  +    R+
Sbjct: 138 KEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRI 183


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 133/268 (49%), Gaps = 15/268 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI    K  R+D+A + L +M++    PNVVTY  +++G+CR   +  SE+      
Sbjct: 517 YTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCR---IGESEK------ 567

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+   M  +G  P+V +++ ++    +A +  LSLD    M  KG  P   TY  ++
Sbjct: 568 -ALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLI 626

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+ G ++ A  LLGEM +       + Y C  + +   K    ++ +  +M+  G  
Sbjct: 627 NHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFS--KSFIASLGILEEMESYGT- 683

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVK--GSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           VP    Y +LI  F    R+++  E+  ++    S +  D D Y  LI  LC   + +EA
Sbjct: 684 VPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEA 743

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            + + EM  +G +P+   F  L +GL++
Sbjct: 744 FRLYSEMTRRGFVPELSVFVCLIKGLVE 771



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 136/286 (47%), Gaps = 15/286 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTI 60
           YT+LI+ + K  ++  A      M++ G  PN VTY  L++G+C+  ++  + E + K I
Sbjct: 361 YTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLI 420

Query: 61  RNAEKVFDEMRV-----RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA 115
             ++    +          + P+V ++  ++    +AH+   + + L+ M   G  P   
Sbjct: 421 GTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHI 480

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF----FKEYRGRKDANGAMKL 171
            Y +++   C  G+I+ A+E+  +M + G  PS  TY       FK+  GR D   AMK+
Sbjct: 481 VYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKD--GRLDL--AMKV 536

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
             QM +D  C PN+ +Y  +I     +   +   ++ + ++  G  P++ +YT LI GL 
Sbjct: 537 LSQMLKDS-CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLG 595

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           +  K   +   F +M  KG  P  VT+  L   L  + +L   R L
Sbjct: 596 KAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLL 641



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 127/286 (44%), Gaps = 30/286 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I   C   +++ A     EM   GV P+V TY +L++  C+             I 
Sbjct: 291 YSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAG----------LIE 340

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F+EMR  G  P V +++ ++H Y +A Q   + D  + M + G  P   TY ++V
Sbjct: 341 QAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALV 400

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G I  A E+  +++  G   SA++                    Y   ++    
Sbjct: 401 DGLCKAGNISKAFEVYAKLI--GTSDSADS------------------DFYFPCEDRHTL 440

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  L+      +++D   E+ + +  SG  P+   Y  LI G C+  K   A +
Sbjct: 441 APNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQE 500

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            F++M + G LP   T+ +L   + +   L    ++  ++ ++S T
Sbjct: 501 VFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT 546



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 132/299 (44%), Gaps = 21/299 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G+ K  ++   +R +  M+  G  PN   +N L++  C           EK   
Sbjct: 145 YRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCN----------EKDYA 194

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT----- 116
            A K+ + M   G  P    ++I +   S   Q +L    L  + EK     +A      
Sbjct: 195 YAYKLLNRMTTCGCPPGYVVYNIFIG--SICGQEKLPSPDLLDLAEKIYGEMLAANCVLN 252

Query: 117 ---YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
               ++  +CLC  G+ + A +L+ EM+R G  P   TY+              A  L++
Sbjct: 253 KVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQ 312

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           +MK  G+  P++++Y ILI  F     ++  + ++ +++  G  P + +YT LIH   + 
Sbjct: 313 EMKMVGV-TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKA 371

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEF 292
           ++  +A   F  M++ G  P  VT+  L  GL ++  +     +  KL   S +  S+F
Sbjct: 372 KQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDF 430



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 121/319 (37%), Gaps = 56/319 (17%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ SL++ +C       A + L  M   G  P  V YN+ +  +C +  L PS      +
Sbjct: 179 LFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKL-PSPDL---L 234

Query: 61  RNAEKVFDEMRV-----------------------------------RGIEPDVTSFSIV 85
             AEK++ EM                                     +G  PD +++S V
Sbjct: 235 DLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKV 294

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           +     A + + +      MK  G+ P V TY+ ++   C  G IE A+ L  EM   G 
Sbjct: 295 ITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGC 354

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P+  TY      Y   K    A  ++ +M + G C PN  +Y  L+        +    
Sbjct: 355 SPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG-CRPNDVTYGALVDGLCKAGNISKAF 413

Query: 206 EIWNDVKGSG----------------LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
           E++  + G+                 L P++ +Y  L+ GLC+  K   A +    M+  
Sbjct: 414 EVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSS 473

Query: 250 GLLPQKVTFETLYRGLIQS 268
           G  P  + ++ L  G  ++
Sbjct: 474 GCEPNHIVYDALIDGFCKA 492



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 113/304 (37%), Gaps = 29/304 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA----SLHPSERFE 57
           Y +L+       ++D+  R   EM E G   +  T     + +C+      +L   ER +
Sbjct: 43  YNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDMIERED 102

Query: 58  KTIRNA-----------EKVFDE-------MRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
             +                 FDE       MR     P+V ++  +L  + +  Q     
Sbjct: 103 FKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCK 162

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
             +N M  +G  P  + ++S+V   C+      A +LL  M   G  P    YN F    
Sbjct: 163 RIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSI 222

Query: 160 RGRKDANG------AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
            G++          A K+Y +M     CV N  +          + + D   ++  ++  
Sbjct: 223 CGQEKLPSPDLLDLAEKIYGEMLAAN-CVLNKVNVANFARCLCGVGKFDKAFQLIKEMMR 281

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT 273
            G  PD  +Y+ +I  LC   K ++A   F EM   G+ P   T+  L     ++ ++  
Sbjct: 282 KGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQ 341

Query: 274 WRRL 277
            + L
Sbjct: 342 AQWL 345



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 77/197 (39%), Gaps = 16/197 (8%)

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127
           D ++  G  P   +++ ++ V S A Q  L       M E G C    T       LC  
Sbjct: 29  DPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKE 88

Query: 128 GRIEDAEELLGE---MVRNGVCP---SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           GR  DA +++      +   +C    S      +F E         AM    +M+ +  C
Sbjct: 89  GRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDE---------AMSFLHRMRCNS-C 138

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+ +Y  L+  F+   ++   + I N +   G  P+   +  L+H  C ++ +  A +
Sbjct: 139 IPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYK 198

Query: 242 YFVEMIEKGLLPQKVTF 258
               M   G  P  V +
Sbjct: 199 LLNRMTTCGCPPGYVVY 215


>gi|356519580|ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Glycine max]
          Length = 1012

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 134/286 (46%), Gaps = 12/286 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+SL+ G+ K      A   + EM E+ ++ +VV YN L  G+ R     P         
Sbjct: 519 YSSLMDGYFKEGNESAALSVVQEMTEKDMQFDVVAYNALTKGLLRLGKYEP--------- 569

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             + VF  M   G+ PD  +++ V++ Y    + + +LD LN MK  G+ P + TY+ ++
Sbjct: 570 --KSVFSRMIELGLTPDCVTYNSVMNTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILI 627

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G IE    +L EM+  G  P+   +    K Y   + A+  +++++++ + GL 
Sbjct: 628 GGLCKTGAIEKVISVLHEMLAVGYVPTPIIHKFLLKAYSRSRKADAILQIHKKLVDMGLN 687

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N   YN LI +   L        +  ++   G+  D+ +Y  LI G C     ++A  
Sbjct: 688 L-NQMVYNTLITVLCRLGMTKKANVVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFN 746

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            + +M+  G+ P   T+  L  GL  + ++R   +L  ++ E  + 
Sbjct: 747 TYSQMLVSGISPNITTYNALLEGLSTNGLMRDADKLVSEMRERGLV 792



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 124/276 (44%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S++  +    + + A   L EM   GV PN+VTYN+L+ G+C+  ++      EK I 
Sbjct: 588 YNSVMNTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILIGGLCKTGAI------EKVI- 640

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
               V  EM   G  P       +L  YSR+ +    L     + + G+      Y++++
Sbjct: 641 ---SVLHEMLAVGYVPTPIIHKFLLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNTLI 697

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G  + A  +L EMV  G+     TYN   + Y        A   Y QM   G+ 
Sbjct: 698 TVLCRLGMTKKANVVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVSGIS 757

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN L+        M    ++ ++++  GL P+  +Y +L+ G       +++ +
Sbjct: 758 -PNITTYNALLEGLSTNGLMRDADKLVSEMRERGLVPNATTYNILVSGHGRVGNKRDSIK 816

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            + EMI KG +P   T+  L +   ++  +R  R L
Sbjct: 817 LYCEMITKGFIPTTGTYNVLIQDYAKAGKMRQAREL 852



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 128/266 (48%), Gaps = 23/266 (8%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+  + +  + D   +   ++++ G+  N + YN L+  +CR              + A 
Sbjct: 661 LLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNTLITVLCRLG----------MTKKAN 710

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            V  EM ++GI  D+ +++ ++  Y      + + +  + M   GI P + TY+++++ L
Sbjct: 711 VVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVSGISPNITTYNALLEGL 770

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
            + G + DA++L+ EM   G+ P+A TYN     +    +   ++KLY +M   G  +P 
Sbjct: 771 STNGLMRDADKLVSEMRERGLVPNATTYNILVSGHGRVGNKRDSIKLYCEMITKGF-IPT 829

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE-----------K 233
             +YN+LI  +    +M   RE+ N++   G  P+  +Y +LI G C+           K
Sbjct: 830 TGTYNVLIQDYAKAGKMRQARELLNEMLTRGRIPNSSTYDVLICGWCKLSCQPEMDRLLK 889

Query: 234 QKWK-EACQYFVEMIEKGLLPQKVTF 258
             ++ EA +   EM EKG +P + T 
Sbjct: 890 LSYQNEAKKLLREMCEKGHVPSESTL 915



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 23/224 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G+C  + ++ A     +M+  G+ PN+ TYN LL G+               +R
Sbjct: 728 YNALIRGYCTGSHVEKAFNTYSQMLVSGISPNITTYNALLEGLSTNG----------LMR 777

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A+K+  EMR RG+ P+ T+++I++  + R    + S+     M  KG  PT  TY+ ++
Sbjct: 778 DADKLVSEMRERGLVPNATTYNILVSGHGRVGNKRDSIKLYCEMITKGFIPTTGTYNVLI 837

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF------------KEYRGRKDANGAM 169
           +     G++  A ELL EM+  G  P++ TY+                        N A 
Sbjct: 838 QDYAKAGKMRQARELLNEMLTRGRIPNSSTYDVLICGWCKLSCQPEMDRLLKLSYQNEAK 897

Query: 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
           KL R+M E G  VP+  +   +   F A  + D  + +   V G
Sbjct: 898 KLLREMCEKG-HVPSESTLMYISSNFSAPGKRDDAKRLLKTVIG 940



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 133/294 (45%), Gaps = 12/294 (4%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI--- 60
           +L+ G+C++  +  A   + +  + GV+P++VTYN L+N  C+R  L  +E     I   
Sbjct: 150 TLVDGYCEVGLVSRALDLVEDGWKNGVKPDIVTYNTLVNAFCKRGDLAKAESVVNEILGF 209

Query: 61  -RNAEK-VFDEMRV------RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP 112
            R+ E  V ++  V      R ++P V +++ ++  Y +             M   G+ P
Sbjct: 210 RRDDESGVLNDCGVETWDGLRDLQPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMP 269

Query: 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172
            V T SS++  LC  G++ +A  LL EM   G+ P+  +Y               A    
Sbjct: 270 DVVTCSSILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSYTTIISALLKSGRVMEAFNHQ 329

Query: 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
            QM   G+ +  +    ++ G+F A  +     E++  +    L P+  +YT L+ G C+
Sbjct: 330 SQMVVRGISIDLVLCTTMMDGLFKA-GKSKEAEEMFQTILKLNLVPNCVTYTALLDGHCK 388

Query: 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
               + A     +M ++ +LP  VTF ++  G  +  ML     + +K+ + +I
Sbjct: 389 VGDVEFAETVLQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVLRKMVQMNI 442



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 135/313 (43%), Gaps = 43/313 (13%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+L+ G CK+  ++ AE  L +M +  V PNVVT++ ++NG  ++  L+          
Sbjct: 379 YTALLDGHCKVGDVEFAETVLQKMEKEHVLPNVVTFSSIINGYAKKGMLN---------- 428

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +V  +M    I P+V  ++I+L  Y R  Q + +      MK  G+      +  ++
Sbjct: 429 KAVEVLRKMVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYKEMKSWGLEENNIIFDILL 488

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
             L   G +++A+ L+ +++  G+      Y+     Y    + + A+ + ++M E  + 
Sbjct: 489 NNLKRSGGMKEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNESAALSVVQEMTEKDMQ 548

Query: 181 --------------------------------CVPNMHSYNILIGMFMALNRMDMVREIW 208
                                             P+  +YN ++  +    + +   ++ 
Sbjct: 549 FDVVAYNALTKGLLRLGKYEPKSVFSRMIELGLTPDCVTYNSVMNTYFIQGKTENALDLL 608

Query: 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           N++K  G+ P++ +Y +LI GLC+    ++      EM+  G +P  +  + L +   +S
Sbjct: 609 NEMKSYGVMPNMVTYNILIGGLCKTGAIEKVISVLHEMLAVGYVPTPIIHKFLLKAYSRS 668

Query: 269 DMLRTWRRLKKKL 281
                  ++ KKL
Sbjct: 669 RKADAILQIHKKL 681



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 119/269 (44%), Gaps = 29/269 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++++G+CK    D     L EM+++GV  + VT N+L+ G C+             ++
Sbjct: 78  YNTVVWGFCKRGLADQGFGLLSEMVKKGVCFDSVTCNILVKGYCQIG----------LVQ 127

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AE +   +   G+  D    + ++  Y        +LD +    + G+ P + TY+++V
Sbjct: 128 YAEWIMGNLVGGGVPLDAIGLNTLVDGYCEVGLVSRALDLVEDGWKNGVKPDIVTYNTLV 187

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
              C  G +  AE ++ E++                 +R R D +G +        DGL 
Sbjct: 188 NAFCKRGDLAKAESVVNEIL----------------GFR-RDDESGVLNDCGVETWDGLR 230

Query: 181 -CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              P + ++  LI  +     +D    ++  +  SG+ PD+ + + +++GLC   K  EA
Sbjct: 231 DLQPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEA 290

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
                EM   GL P  V++ T+   L++S
Sbjct: 291 AMLLREMYNMGLDPNHVSYTTIISALLKS 319



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 127/290 (43%), Gaps = 26/290 (8%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL-----HPSERFE 57
           +S++YG C+  ++  A   L EM   G++PN V+Y  +++ + +   +     H S+   
Sbjct: 275 SSILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSYTTIISALLKSGRVMEAFNHQSQMVV 334

Query: 58  KTI--------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL 97
           + I                    + AE++F  +    + P+  +++ +L  + +    + 
Sbjct: 335 RGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTILKLNLVPNCVTYTALLDGHCKVGDVEF 394

Query: 98  SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157
           +   L  M+++ + P V T+SS++      G +  A E+L +MV+  + P+   Y     
Sbjct: 395 AETVLQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLD 454

Query: 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
            Y        A   Y++MK  GL   N+  ++IL+        M   + +  D+   G+ 
Sbjct: 455 GYFRTGQHEAAAGFYKEMKSWGLEENNI-IFDILLNNLKRSGGMKEAQSLIKDILSKGIY 513

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            D+ +Y+ L+ G  ++     A     EM EK +    V +  L +GL++
Sbjct: 514 LDVFNYSSLMDGYFKEGNESAALSVVQEMTEKDMQFDVVAYNALTKGLLR 563


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 125/260 (48%), Gaps = 10/260 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI  +C +N  + A     EM++ G  P+ + Y  L++G  +   +           
Sbjct: 492 YTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMA---------- 541

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  V  E++  GI PD   ++ ++  + R ++     + L  M+E G+ P   TY++++
Sbjct: 542 DASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLI 601

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G ++ A++++ +M++ GV P+  TY      Y    + N AM++++ MK     
Sbjct: 602 AYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKV 661

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN   YNILI      N++     +  D+K  G+ P+  +Y  +  GL +++  ++  +
Sbjct: 662 PPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFE 721

Query: 242 YFVEMIEKGLLPQKVTFETL 261
           +   MIE    P  +T E L
Sbjct: 722 FMDRMIEHACNPDYITMEIL 741



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 136/304 (44%), Gaps = 23/304 (7%)

Query: 5   LIYGWCKINRIDMAERFLGEM--------IERGVEPNVVTYNVLLNGVCRRASLHPSERF 56
           LI   CK  R+D A   L +M        I   VEP+VV YN L++G+C+          
Sbjct: 346 LINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGL 405

Query: 57  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT 116
            + +R+          +G  PD  +++ ++  + +A + +   +  + M ++G+ P V T
Sbjct: 406 MERMRSQ---------KGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVT 456

Query: 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176
            +++V  +C  GR+  A     E  R G+   A TY      +    +   AM+L+ +M 
Sbjct: 457 VNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEML 516

Query: 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236
           + G C P+   Y  LI  F    RM     +  ++K  G+ PD   Y  LI G C   K+
Sbjct: 517 KSG-CSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKF 575

Query: 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI-----TFGSE 291
               +   EM E GL P  +T+ TL     ++  L+  +++ +K+ +  +     T+G+ 
Sbjct: 576 HRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAV 635

Query: 292 FQNY 295
              Y
Sbjct: 636 INAY 639



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 128/290 (44%), Gaps = 27/290 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK--- 58
           Y  LI G+CK   I+  +    EM + GV PNVVT N L+ G+CR   +  +  F     
Sbjct: 422 YNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQ 481

Query: 59  -------------------TIRNAEK---VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               + N EK   +F+EM   G  PD   +  ++  +S+A +  
Sbjct: 482 RRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMA 541

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +   L  +K+ GI P    Y++++   C   +     E+L EM   G+ P   TYN   
Sbjct: 542 DASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLI 601

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK-GSG 215
                  D   A K+ R+M + G+ VP + +Y  +I  +      +   EI+ D+K  S 
Sbjct: 602 AYASKNGDLKFAQKVMRKMIKAGV-VPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASK 660

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265
           + P+   Y +LI+ LC+  K K A     +M   G+ P   T+  +++GL
Sbjct: 661 VPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGL 710


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 128/266 (48%), Gaps = 17/266 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI  +CK      A      M   G++P++VTYN L++G C+   +  + R  K IR
Sbjct: 238 YNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIR 297

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A             P+  +++ ++  Y R +    +L     M+ +G+ PTV TY+S++
Sbjct: 298 DAT------------PNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSIL 345

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  GRI DA +LL EM    + P   T N     Y    D   A+K+  +M E GL 
Sbjct: 346 RKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLK 405

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + +  +Y  LI  F  +  MD  +E+   +  +G  P   +Y+ L+ G C +Q  +   +
Sbjct: 406 L-DQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLK 464

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
              E + KGL   K    +LYR LI+
Sbjct: 465 LPDEFVRKGLCVDK----SLYRALIR 486



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 133/273 (48%), Gaps = 21/273 (7%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A +    M+  G  P++    VLLN + +       +R    +    KV+ +M   G+E 
Sbjct: 149 AIQVFEHMMVNGFRPHLHACTVLLNSLAK-------DRLTDMVW---KVYKKMARIGVEA 198

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
           ++  +++++H   ++   + + + L+ M+ K + P + TY++++   C  G   +A  + 
Sbjct: 199 NIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQ 258

Query: 138 GEMVRNGVCPSAETYNC----FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             M R G+ P   TYN     F KE R R+    AM+L++++++     PN  +Y  LI 
Sbjct: 259 DRMEREGIKPDIVTYNSLIHGFCKEGRMRE----AMRLFKEIRD---ATPNHVTYTTLID 311

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
            +  LN +D    +  +++  GL P + +Y  ++  LCE  + ++A +   EM EK + P
Sbjct: 312 GYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEP 371

Query: 254 QKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
             VT  TL     +   +++  ++K ++ E  +
Sbjct: 372 DNVTCNTLINAYCKIGDMKSALKVKNRMVEAGL 404



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 45/213 (21%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT+LI G+C++N +D A R   EM  +G+ P VVTYN +L  +C              IR
Sbjct: 306 YTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGR----------IR 355

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVY-------------SRAHQPQLSLDKLNF---- 104
           +A K+ +EM  + IEPD  + + +++ Y             +R  +  L LD+  +    
Sbjct: 356 DANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALI 415

Query: 105 ------------------MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                             M + G  P+  TYS +V   C+    E   +L  E VR G+C
Sbjct: 416 HGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLC 475

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
                Y    + +  R+  + A K++  M+E G
Sbjct: 476 VDKSLYRALIRRFCKREQVDYAKKIFSLMQEKG 508



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 16/163 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI+G+CKI  +D A+  L  M++ G  P+  TY+ L++G C +             +
Sbjct: 411 YKALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQ-------------Q 457

Query: 62  NAEKVF---DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           N E V    DE   +G+  D + +  ++  + +  Q   +    + M+EKG       Y+
Sbjct: 458 NEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDYAKKIFSLMQEKGTLGDSVIYT 517

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161
           S+       G+   A +LL EM +  +  + + Y      Y G
Sbjct: 518 SLAYAYWKLGKANAASDLLDEMYKRRLMITLKIYRALNASYAG 560


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 146/314 (46%), Gaps = 33/314 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSL+ G+ K    D A   + +M+  G + ++ TY+VLL  +C+          +K + 
Sbjct: 598 YTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCK----------QKKLN 647

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D+M V G++ ++ +++I++    +  +   +    N M   G  P+  TY+  +
Sbjct: 648 EALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFI 707

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G+IE+AE L+GEM R+GV P   TY+ F          + A    ++M  D  C
Sbjct: 708 SSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMV-DASC 766

Query: 182 VPNMHSYNILIGMFMALNRMDM----VREIWNDVK------------GSGLGPDLDSYTM 225
            PN  +Y +L+  F+ ++ ++        +WN ++              GL P + +Y+ 
Sbjct: 767 EPNCWTYWLLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQLLERMMKHGLNPTVVTYSS 826

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ--SDMLRTWRRLKKKLDE 283
           +I G C+  + +EAC     M+ K + P     E +Y  LI+   D+    + +    D 
Sbjct: 827 IIAGFCKATRLEEACVLLDHMLGKAISPN----EEIYTMLIKCCCDIKLFGKDVSFVTDM 882

Query: 284 ESITFGSEFQNYHF 297
               F  + ++YH+
Sbjct: 883 IEFGFQPQLESYHY 896



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 140/288 (48%), Gaps = 12/288 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G  +   +  A   +  M++ G   N+  Y +L+ G+C+   +H          
Sbjct: 252 YTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRIH---------- 301

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  + DEM +RG+ P V +++ ++  Y ++ + + +L     M++ G  P   TY+S++
Sbjct: 302 DARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLI 361

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G++++AEELL   +  G  P+  T+      Y   +  + A+++   M     C
Sbjct: 362 YGLCG-GKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSN-C 419

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             ++ +Y +LI + +   R+   +E  N++  +GL P++  YT +I G C+      A +
Sbjct: 420 KLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALE 479

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
            F  M  +G  P   T+ +L  GLIQ   L     L  K+ E+ IT G
Sbjct: 480 VFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPG 527



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 130/292 (44%), Gaps = 25/292 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MYT LI G CK  RI  A   L EM  RGV P+V TYN +++G C+   +  +   +  +
Sbjct: 286 MYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALM 345

Query: 61  RN------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                     AE++ +    RG  P V +F+ +++ Y +A +  
Sbjct: 346 EQNGCNPDDWTYNSLIYGLCGGKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERID 405

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   + M        +  Y  ++  L    R+++A+E L EM  NG+ P+   Y    
Sbjct: 406 DALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSII 465

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y        A+++++ M+ +G C PN  +Y  LI   +   ++     +   ++  G+
Sbjct: 466 DGYCKVGMVGAALEVFKLMEHEG-CHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGI 524

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            P + +YT LI G C+K ++  A + F  M + GL P +  +  L   L +S
Sbjct: 525 TPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKS 576



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 133/283 (46%), Gaps = 17/283 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLIYG  +  ++  A   + +M E G+ P V+ Y  L+ G C++        F+    
Sbjct: 496 YGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKK------HEFD---- 545

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           NA ++F+ M   G+ PD  +++++     ++ + +   +  +F+  KG+  T  TY+S+V
Sbjct: 546 NAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAE---EAYSFLVRKGVVLTKVTYTSLV 602

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL- 180
                 G  + A  L+ +MV  G      TY+   +    +K  N A+ +  QM   G+ 
Sbjct: 603 DGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVK 662

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           C  N+ +Y I+I   +   + D  + ++N++  SG  P   +YT+ I   C+  + +EA 
Sbjct: 663 C--NIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAE 720

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSD-MLRTWRRLKKKLD 282
               EM   G+ P  VT+     G      M R +  LK+ +D
Sbjct: 721 HLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMVD 763



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 129/323 (39%), Gaps = 59/323 (18%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           Y SLIYG C   ++D AE  L   I RG  P V+T+  L+NG C+   +  + R +    
Sbjct: 357 YNSLIYGLCG-GKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMI 415

Query: 60  -----------------------IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                                  ++ A++  +EM   G+ P+V  ++ ++  Y +     
Sbjct: 416 SSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVG 475

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+    M+ +G  P   TY S++  L    ++  A  L+ +M  +G+ P    Y    
Sbjct: 476 AALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLI 535

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI-------------------------- 190
           +    + + + A +L+  M+++GL  P+  +YN+                          
Sbjct: 536 QGQCKKHEFDNAFRLFEMMEKNGL-TPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLT 594

Query: 191 ------LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
                 L+  F      D    +   +   G   DL +Y++L+  LC+++K  EA     
Sbjct: 595 KVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILD 654

Query: 245 EMIEKGLLPQKVTFETLYRGLIQ 267
           +M   G+    V +  +   +I+
Sbjct: 655 QMTVSGVKCNIVAYTIIISEMIK 677



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 119/251 (47%), Gaps = 18/251 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I  +CK   + +A R+   + E G++ +  T N LL G CR + L          R
Sbjct: 182 YNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDL----------R 231

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +   M + G   +  S++I++     A   + +L  +  M + G    +  Y+ ++
Sbjct: 232 KACWLLMMMPLMGCRRNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLI 291

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY--RGR-KDANGAMKLYRQMKED 178
           K LC  GRI DA  LL EM   GV PS  TYN     Y   GR KDA G   L   M+++
Sbjct: 292 KGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKAL---MEQN 348

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G C P+  +YN LI   +   ++D   E+ N     G  P + ++T LI+G C+ ++  +
Sbjct: 349 G-CNPDDWTYNSLI-YGLCGGKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDD 406

Query: 239 ACQYFVEMIEK 249
           A +    MI  
Sbjct: 407 ALRVKSNMISS 417



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 123/306 (40%), Gaps = 62/306 (20%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT  I  +CKI +I+ AE  +GEM   GV P+VVTY++ +NG      +      ++   
Sbjct: 703 YTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYM------DRAFS 756

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSR-----AHQPQLS-----------LDKLNFM 105
             +++ D       EP+  ++ ++L  + +     AH    S              L  M
Sbjct: 757 TLKRMVDA----SCEPNCWTYWLLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQLLERM 812

Query: 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165
            + G+ PTV TYSS++   C   R+E+A  LL  M+   + P+ E Y    K        
Sbjct: 813 MKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKAISPNEEIYTMLIK-------- 864

Query: 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225
                          C  ++  +   +         DM+          G  P L+SY  
Sbjct: 865 ---------------CCCDIKLFGKDVSFVT-----DMIE--------FGFQPQLESYHY 896

Query: 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285
           LI GLC++  +  A   F +++       +V ++ L  GL+++  +    +L   +D   
Sbjct: 897 LIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILNDGLLKAGHVDFCSQLLAAMDNRH 956

Query: 286 ITFGSE 291
               SE
Sbjct: 957 CRIDSE 962



 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 75/184 (40%), Gaps = 36/184 (19%)

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL-------------- 180
           +L   +V+ G+ P   TYN     Y  +     A + +  ++E G+              
Sbjct: 165 KLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGY 224

Query: 181 --------------------CVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPD 219
                               C  N +SY ILI G++ A    + +  ++  V+  G   +
Sbjct: 225 CRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLYEARCVREALVLVFMMVQ-DGCSLN 283

Query: 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
           L  YT+LI GLC++ +  +A     EM  +G++P   T+  +  G  +S  ++    +K 
Sbjct: 284 LHMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKA 343

Query: 280 KLDE 283
            +++
Sbjct: 344 LMEQ 347


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 139/276 (50%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y ++I G+ K   ++ A     EM++RG+ P+ VTY+ +++ +C+  ++  +E F + + 
Sbjct: 222 YNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMV 281

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           N          +G+ P+  +++ +++ YS   Q + ++     M+ + I P V T++ ++
Sbjct: 282 N----------KGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLM 331

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G+I++A ++   M   G  P   +YN     Y  +        L+  M  DG+ 
Sbjct: 332 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGI- 390

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + ++N+LI  +     +D    I+N+++  G+ P++ +YT +I  LC   K  +A +
Sbjct: 391 APVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAME 450

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F +MI++G+ P K  +  L +G      L   + L
Sbjct: 451 KFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKEL 486



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 129/264 (48%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+S+++  CK   +D AE FL +M+ +GV PN  TYN L+ G                 +
Sbjct: 257 YSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQW----------K 306

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A +VF EMR + I PDV +F++++    +  + + + D  + M  KG  P V +Y+ ++
Sbjct: 307 EAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 366

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
               + G + D  +L   M+ +G+ P   T+N   K Y      + AM ++ +M++ G+ 
Sbjct: 367 NGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGV- 425

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  +I     + +MD   E +N +   G+ PD  +Y  LI G C      +A +
Sbjct: 426 KPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKE 485

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
              E++  G+    V F ++   L
Sbjct: 486 LISEIMNNGMHLDIVLFSSIINNL 509



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 137/296 (46%), Gaps = 21/296 (7%)

Query: 5   LIYGWCKINRIDMA-ERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           L+ G+C+  R D A +  L    E G  P+V +Y++LL  +C +     ++   + +   
Sbjct: 152 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 211

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             V          PDV +++ V+  + +      + D    M ++GI P   TYSSVV  
Sbjct: 212 GAV--------CSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHA 263

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC    ++ AE  L +MV  GV P+  TYN     Y        A++++++M+   + +P
Sbjct: 264 LCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSI-LP 322

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++ ++N+L+G      ++   R++++ +   G  PD+ SY ++++G   K    +    F
Sbjct: 323 DVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLF 382

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299
             M+  G+ P   TF  L +      M          LD+  I F +E +++  KP
Sbjct: 383 DLMLGDGIAPVICTFNVLIKAYANCGM----------LDKAMIIF-NEMRDHGVKP 427



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 141/328 (42%), Gaps = 41/328 (12%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I   C+I ++D A     +MI++GV P+   Y+ L+ G C   SL  ++     I 
Sbjct: 432 YTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIM 491

Query: 62  N-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           N                         A+ +FD     G+ P    +S+++  Y    + +
Sbjct: 492 NNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKME 551

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L   + M   GI P    Y ++V   C  GRI++   L  EM++ G+ PS   YN   
Sbjct: 552 KALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIII 611

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNR-MDMVREIWNDVKGS 214
                      A   + +M E G+ + N  +Y+I++ G+F   NR  D    ++ +++  
Sbjct: 612 DGLFEAGRTVPAKVKFHEMTESGIAM-NKCTYSIVLRGLFK--NRCFDEAIFLFKELRAM 668

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTW 274
            +  D+ +   +I G+ + ++ +EA   F  +   GL+P  VT+  +   LI        
Sbjct: 669 NVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLI-------- 720

Query: 275 RRLKKKLDEESITFGSEFQNYHFKPYRR 302
              K+ L EE+    S  QN   +P  R
Sbjct: 721 ---KEGLVEEAEDMFSSMQNAGCEPDSR 745



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 134/288 (46%), Gaps = 11/288 (3%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +++S+I   CK+ R+  A+      +  G+ P  V Y++L++G C         + EK +
Sbjct: 501 LFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVG------KMEKAL 554

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R    VFD M   GIEP+   +  +++ Y +  +    L     M +KGI P+   Y+ +
Sbjct: 555 R----VFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNII 610

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  L   GR   A+    EM  +G+  +  TY+   +     +  + A+ L+++++   +
Sbjct: 611 IDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNV 670

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +  +    ++ GMF    R++  ++++  +  SGL P + +Y+++I  L ++   +EA 
Sbjct: 671 KIDIITLNTMIAGMFQT-RRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAE 729

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288
             F  M   G  P       + R L++ + +        K+DE + + 
Sbjct: 730 DMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSL 777



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 106/216 (49%), Gaps = 2/216 (0%)

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           R + P   +++I++   +RAH+P+L+L     +   G+   +   + ++K  C   R ++
Sbjct: 105 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDE 164

Query: 133 AEE-LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG-LCVPNMHSYNI 190
           A + LL      G  P   +Y+   K    +  +  A  L R M E G +C P++ +YN 
Sbjct: 165 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNT 224

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           +I  F     ++   +++ ++   G+ PD  +Y+ ++H LC+ +   +A  +  +M+ KG
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKG 284

Query: 251 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +LP   T+  L  G   +   +   R+ K++  +SI
Sbjct: 285 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSI 320



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 113/251 (45%), Gaps = 14/251 (5%)

Query: 28  RGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 87
           R + P   TY +L++  C RA  H  E        A   F ++   G+  D+   + +L 
Sbjct: 105 RVLSPTSHTYAILMD-CCTRA--HRPEL-------ALAFFGQLLRTGLRVDIIIANHLLK 154

Query: 88  VYSRAHQPQLSLD-KLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG-V 145
            +  A +   +LD  L+   E G  P V +YS ++K LC  G+   A++LL  M   G V
Sbjct: 155 GFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV 214

Query: 146 C-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           C P    YN     +    D N A  L+++M + G+  P+  +Y+ ++        MD  
Sbjct: 215 CSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGI-PPDFVTYSSVVHALCKARAMDKA 273

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
                 +   G+ P+  +Y  LI+G     +WKEA + F EM  + +LP  VTF  L   
Sbjct: 274 EAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGS 333

Query: 265 LIQSDMLRTWR 275
           L +   ++  R
Sbjct: 334 LCKYGKIKEAR 344



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 113/257 (43%), Gaps = 11/257 (4%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y+ L+ G+C + +++ A R    M+  G+EPN V Y  L+NG C+             I
Sbjct: 536 VYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGR----------I 585

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
                +F EM  +GI+P    ++I++     A +   +  K + M E GI     TYS V
Sbjct: 586 DEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIV 645

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           ++ L      ++A  L  E+    V     T N         +    A  L+  +   GL
Sbjct: 646 LRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGL 705

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VP + +Y+I+I   +    ++   ++++ ++ +G  PD      ++  L +K +   A 
Sbjct: 706 -VPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAG 764

Query: 241 QYFVEMIEKGLLPQKVT 257
            Y  ++ E+    + +T
Sbjct: 765 AYLSKIDERNFSLEHLT 781


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 133/268 (49%), Gaps = 15/268 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTSLI    K  R+D+A + L +M++    PNVVTY  +++G+CR   +  SE+      
Sbjct: 517 YTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCR---IGESEK------ 567

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+   M  +G  P+V +++ ++    +A +  LSLD    M  KG  P   TY  ++
Sbjct: 568 -ALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLI 626

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+ G ++ A  LLGEM +       + Y C  + +   K    ++ +  +M+  G  
Sbjct: 627 NHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFS--KSFIASLGILEEMESYGT- 683

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVK--GSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           VP    Y +LI  F    R+++  E+  ++    S +  D D Y  LI  LC   + +EA
Sbjct: 684 VPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEA 743

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            + + EM  +G +P+   F  L +GL++
Sbjct: 744 FRLYSEMTRRGFVPELSVFVCLIKGLVE 771



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 136/286 (47%), Gaps = 15/286 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTI 60
           YT+LI+ + K  ++  A      M++ G  PN VTY  L++G+C+  ++  + E + K I
Sbjct: 361 YTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLI 420

Query: 61  RNAEKVFDEMRV-----RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA 115
             ++    +          + P+V ++  ++    +AH+   + + L+ M   G  P   
Sbjct: 421 GTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHI 480

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF----FKEYRGRKDANGAMKL 171
            Y +++   C  G+I+ A+E+  +M + G  PS  TY       FK+  GR D   AMK+
Sbjct: 481 VYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKD--GRLDL--AMKV 536

Query: 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231
             QM +D  C PN+ +Y  +I     +   +   ++ + ++  G  P++ +YT LI GL 
Sbjct: 537 LSQMLKDS-CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLG 595

Query: 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           +  K   +   F +M  KG  P  VT+  L   L  + +L   R L
Sbjct: 596 KAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLL 641



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 127/286 (44%), Gaps = 30/286 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ +I   C   +++ A     EM   GV P+V TY +L++  C+             I 
Sbjct: 291 YSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAG----------LIE 340

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F+EMR  G  P V +++ ++H Y +A Q   + D  + M + G  P   TY ++V
Sbjct: 341 QAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALV 400

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  G I  A E+  +++  G   SA++                    Y   ++    
Sbjct: 401 DGLCKAGNISKAFEVYAKLI--GTSDSADS------------------DFYFPCEDRHTL 440

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +Y  L+      +++D   E+ + +  SG  P+   Y  LI G C+  K   A +
Sbjct: 441 APNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQE 500

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            F++M + G LP   T+ +L   + +   L    ++  ++ ++S T
Sbjct: 501 VFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT 546



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 132/299 (44%), Gaps = 21/299 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G+ K  ++   +R +  M+  G  PN   +N L++  C           EK   
Sbjct: 145 YRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCN----------EKDYA 194

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT----- 116
            A K+ + M   G  P    ++I +   S   Q +L    L  + EK     +A      
Sbjct: 195 YAYKLLNRMTTCGCPPGYVVYNIFIG--SICGQEKLPSPDLLDLAEKIYGEMLAANCVLN 252

Query: 117 ---YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173
               ++  +CLC  G+ + A +L+ EM+R G  P   TY+              A  L++
Sbjct: 253 KVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQ 312

Query: 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233
           +MK  G+  P++++Y ILI  F     ++  + ++ +++  G  P + +YT LIH   + 
Sbjct: 313 EMKMVGV-TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKA 371

Query: 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEF 292
           ++  +A   F  M++ G  P  VT+  L  GL ++  +     +  KL   S +  S+F
Sbjct: 372 KQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDF 430



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 121/319 (37%), Gaps = 56/319 (17%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++ SL++ +C       A + L  M   G  P  V YN+ +  +C +  L PS      +
Sbjct: 179 LFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKL-PSPDL---L 234

Query: 61  RNAEKVFDEMRV-----------------------------------RGIEPDVTSFSIV 85
             AEK++ EM                                     +G  PD +++S V
Sbjct: 235 DLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKV 294

Query: 86  LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145
           +     A + + +      MK  G+ P V TY+ ++   C  G IE A+ L  EM   G 
Sbjct: 295 ITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGC 354

Query: 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P+  TY      Y   K    A  ++ +M + G C PN  +Y  L+        +    
Sbjct: 355 SPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG-CRPNDVTYGALVDGLCKAGNISKAF 413

Query: 206 EIWNDVKGSG----------------LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249
           E++  + G+                 L P++ +Y  L+ GLC+  K   A +    M+  
Sbjct: 414 EVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSS 473

Query: 250 GLLPQKVTFETLYRGLIQS 268
           G  P  + ++ L  G  ++
Sbjct: 474 GCEPNHIVYDALIDGFCKA 492



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 29/206 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-------- 53
           YT+LI G  K  +ID++     +M  +G  PN VTY VL+N +C    L  +        
Sbjct: 587 YTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMK 646

Query: 54  ---------------ERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLS 98
                          + F K+   +  + +EM   G  P    + +++  +S+A + +++
Sbjct: 647 QTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIA 706

Query: 99  LDKLNFMKEKGICPTVAT----YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154
           ++    M E  +  +V T    Y+S+++ LC   ++E+A  L  EM R G  P    + C
Sbjct: 707 MELHKEMME--VPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVC 764

Query: 155 FFKEYRGRKDANGAMKLYRQMKEDGL 180
             K     K  + A++L   +  +G+
Sbjct: 765 LIKGLVEVKKWDEALQLCYGICHEGV 790



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 113/304 (37%), Gaps = 29/304 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA----SLHPSERFE 57
           Y +L+       ++D+  R   EM E G   +  T     + +C+      +L   ER +
Sbjct: 43  YNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDMIERED 102

Query: 58  KTIRNA-----------EKVFDE-------MRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
             +                 FDE       MR     P+V ++  +L  + +  Q     
Sbjct: 103 FKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCK 162

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
             +N M  +G  P  + ++S+V   C+      A +LL  M   G  P    YN F    
Sbjct: 163 RIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSI 222

Query: 160 RGRKDANG------AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213
            G++          A K+Y +M     CV N  +          + + D   ++  ++  
Sbjct: 223 CGQEKLPSPDLLDLAEKIYGEMLAAN-CVLNKVNVANFARCLCGVGKFDKAFQLIKEMMR 281

Query: 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT 273
            G  PD  +Y+ +I  LC   K ++A   F EM   G+ P   T+  L     ++ ++  
Sbjct: 282 KGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQ 341

Query: 274 WRRL 277
            + L
Sbjct: 342 AQWL 345



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 77/197 (39%), Gaps = 16/197 (8%)

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127
           D ++  G  P   +++ ++ V S A Q  L       M E G C    T       LC  
Sbjct: 29  DPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKE 88

Query: 128 GRIEDAEELLGE---MVRNGVCP---SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           GR  DA +++      +   +C    S      +F E         AM    +M+ +  C
Sbjct: 89  GRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDE---------AMSFLHRMRCNS-C 138

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN+ +Y  L+  F+   ++   + I N +   G  P+   +  L+H  C ++ +  A +
Sbjct: 139 IPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYK 198

Query: 242 YFVEMIEKGLLPQKVTF 258
               M   G  P  V +
Sbjct: 199 LLNRMTTCGCPPGYVVY 215


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 135/266 (50%), Gaps = 4/266 (1%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-- 59
           Y+S+I G+CK +R++ A+     M+ +G  P+++T N L++G CR A  H    F +   
Sbjct: 188 YSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCR-AKRHLIHGFCQVGN 246

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           +  A+ +F EM   G+ PD+ + + +L       + + +L+     ++  +    AT + 
Sbjct: 247 VNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNI 306

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           ++  +C   ++++A +L   +  NGV     TYN     +    +   A  +Y +M   G
Sbjct: 307 IINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKG 366

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
           + +P+  +YN ++  F   NR++  R++ + +   G  PD+ +++ LI G C+  +  + 
Sbjct: 367 I-IPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDG 425

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGL 265
            + F EM ++GL+   +T+  L  G 
Sbjct: 426 LELFSEMCQRGLVADTITYNALIHGF 451



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 138/285 (48%), Gaps = 17/285 (5%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFEKTIRNA 63
           LI+G+C++  +++A+    EMI  GV P++VT N LL G+C    L  + E F       
Sbjct: 237 LIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMF------- 289

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
            KVF + +   ++ D  + +I+++   + ++   + D  N +   G+   V TY+ ++  
Sbjct: 290 -KVFQKSK---MDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGV 345

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
               G    AE++  EM+  G+ PS  TYN     +  +     A ++   M  +G C P
Sbjct: 346 FVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEG-CSP 404

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++ +++ LI  +    R+D   E+++++   GL  D  +Y  LIHG C+      A   F
Sbjct: 405 DVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIF 464

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLR----TWRRLKKKLDEE 284
            EM+  G+ P  +TF ++  GL     L+        L+K +D E
Sbjct: 465 EEMVSSGVCPDTITFRSMLAGLCTKAELQKGLTMLEDLQKSVDHE 509



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 29/302 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +T+L+ G C+  R+  A   +  M+E G +P+ VTY  ++NG+C+               
Sbjct: 13  FTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD----------TV 62

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +  +M    I+ +V  +S ++    +      + +    M EKGI P V TY+ ++
Sbjct: 63  SALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMI 122

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              CS G+  DAE+LL +M+   + P   T++     +      +GA +LYR+M    + 
Sbjct: 123 DGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNI- 181

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM-----------LIHGL 230
            P   +Y+ +I  F   +R++  + +++ +   G  PD+ +              LIHG 
Sbjct: 182 FPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGF 241

Query: 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS-------DMLRTWRRLKKKLDE 283
           C+      A   F EMI  G+ P  VT  TL  GL ++       +M + +++ K  LD 
Sbjct: 242 CQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDT 301

Query: 284 ES 285
            +
Sbjct: 302 AT 303



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 11/240 (4%)

Query: 25  MIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84
           M+E G   NVVT+  L+NG+CR          E  +  A  + D M   G +PD  ++  
Sbjct: 1   MVETGCPANVVTFTTLMNGLCR----------EGRVLQALALVDRMVEEGHQPDAVTYGT 50

Query: 85  VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144
           +++   +      +L+ L  M E  I   V  YS++V  LC  G    A+ +  EM   G
Sbjct: 51  IVNGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKG 110

Query: 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204
           + P+  TYNC    Y      + A +L R M E  +  P++ +++ LI  F+   ++   
Sbjct: 111 IFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNI-DPDVVTFSALINAFVKEGKVSGA 169

Query: 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
            E++ ++    + P   +Y+ +I G C+  + ++A   F  M+ KG  P  +T  TL  G
Sbjct: 170 EELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDG 229



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 153/346 (44%), Gaps = 62/346 (17%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y++++   CK      A+    EM E+G+ PNV+TYN +++G C               
Sbjct: 82  IYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKW---------- 131

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +AE++  +M  R I+PDV +FS +++ + +  +   + +    M  + I PT  TYSS+
Sbjct: 132 SDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSM 191

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE-YRGRK----------DANGAM 169
           +   C   R+EDA+ +   MV  G  P   T N       R ++          + N A 
Sbjct: 192 IDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQ 251

Query: 170 KLYRQMKEDGLCVPNMHSYNILIG-------------MFMAL------------------ 198
            L+++M  +G+  P++ + N L+              MF                     
Sbjct: 252 DLFQEMISNGVS-PDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIING 310

Query: 199 ----NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
               N++D   +++N +  +G+  D+ +Y +LI    ++  +  A   ++EM+ KG++P 
Sbjct: 311 MCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPS 370

Query: 255 KVTFETLYRGLIQSDMLRTWRRLKKKLDEES-----ITFGSEFQNY 295
            VT+ ++  G  + + L   R++   +  E      +TF +  + Y
Sbjct: 371 TVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGY 416



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M E G    V T+++++  LC  GR+  A  L+  MV  G  P A TY           D
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224
              A+ + R+M E  +   N+  Y+ ++            + I+ ++   G+ P++ +Y 
Sbjct: 61  TVSALNMLRKMDESQI-KANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYN 119

Query: 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRR-LKK 279
            +I G C   KW +A Q   +MIE+ + P  VTF  L    ++    S     +R  L++
Sbjct: 120 CMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRR 179

Query: 280 KLDEESITFGSEFQNY 295
            +   +IT+ S    +
Sbjct: 180 NIFPTTITYSSMIDGF 195



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 10/85 (11%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++LI G+CK  R+D       EM +RG+  + +TYN L++G C+   L+          
Sbjct: 409 FSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLN---------- 458

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVL 86
            A+ +F+EM   G+ PD  +F  +L
Sbjct: 459 GAQDIFEEMVSSGVCPDTITFRSML 483



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH 51
           Y +LI+G+CK+  ++ A+    EM+  GV P+ +T+  +L G+C +A L 
Sbjct: 444 YNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQ 493


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 138/280 (49%), Gaps = 11/280 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++LI  +C+ +R+ +A   LG+M++ G EP++VT+  L+NG C              I+
Sbjct: 111 FSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCH----------VNRIQ 160

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D++   G EP+V  ++ ++       Q   +LD LN M++ GI P V TY+S++
Sbjct: 161 EAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLI 220

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G+   +  +L +M+R G+ P   T++     +        A K Y +M +  + 
Sbjct: 221 TRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSV- 279

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ +YN LI        +D  +++ N +   G  P+  +Y  L++G C+ ++  +A +
Sbjct: 280 DPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMK 339

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
               M   G+     T+ TLY+G  Q+       ++  ++
Sbjct: 340 ILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARM 379



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 143/293 (48%), Gaps = 26/293 (8%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR----ASLHPSERFE 57
           + SL+ G+C +NRI  A   + +++  G EPNVV YN +++ +C       +L      E
Sbjct: 146 FGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHME 205

Query: 58  KT-IRN--------------------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           K  IR                     + ++  +M   GI PDV +FS ++ V+ +  Q  
Sbjct: 206 KMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLL 265

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +  + + M ++ + P + TY+S++  LC  G +++A+++L  MV  G  P+A TYN   
Sbjct: 266 EAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLV 325

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y   K  + AMK+   M  DG+   +  +YN L   +    + +   ++   +   G+
Sbjct: 326 NGYCKSKRVDDAMKILCVMSHDGV-DGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGV 384

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
            PD+ ++ ML+ GLCE  K ++A     ++ +   +   +T+  + +G+ +++
Sbjct: 385 LPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKAN 437



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 132/277 (47%), Gaps = 16/277 (5%)

Query: 24  EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83
           +M E    P++V ++ LL  + +       +++E  I     +F  + + GI  D+ SFS
Sbjct: 63  DMAESRPLPSIVDFSRLLVAIAKL------KKYEAVI----SLFRHIEILGISHDLYSFS 112

Query: 84  IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143
            ++  + R  +  L+L  L  M + G  P++ T+ S+V   C   RI++A  L+ ++V  
Sbjct: 113 TLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGL 172

Query: 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203
           G  P+   YN         +  + A+ +   M++ G+  P++ +YN LI       +  +
Sbjct: 173 GYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGI-RPDVITYNSLITRLFHSGKWGV 231

Query: 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
              I +D+   G+ PD+ +++ +I    ++ +  EA + + EMI++ + P  VT+ +L  
Sbjct: 232 SARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLIN 291

Query: 264 GLIQSDMLRTWRR-----LKKKLDEESITFGSEFQNY 295
           GL    +L   ++     + K     ++T+ +    Y
Sbjct: 292 GLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGY 328



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 10/182 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+ G+CK  R+D A + L  M   GV+ +  TYN L  G C+    +          
Sbjct: 321 YNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNA--------- 371

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEKV   M   G+ PD+ +F+++L       + + +L KL  +++      + TY+ ++
Sbjct: 372 -AEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIII 430

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K +C   ++EDA  L   +   GV P   TY       R ++    A +LYR+MK+D   
Sbjct: 431 KGMCKANKVEDAWYLFCSLALKGVSPDVITYTTMMIGLRRKRLWLEAHELYRKMKKDDGL 490

Query: 182 VP 183
           +P
Sbjct: 491 MP 492


>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 144/321 (44%), Gaps = 46/321 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CK   +D A   L  ++ERG++PN VTY +L++G  ++     SER      
Sbjct: 467 YNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGD---SER------ 517

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLN-FMK-------------- 106
            A  VF++M    I P   +F+ V++   +  +   + DKLN F+K              
Sbjct: 518 -AFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSII 576

Query: 107 --------------------EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
                               E GI P V TY+S++  LC   +I  A E+  +M   G+ 
Sbjct: 577 DGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMK 636

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
                Y+     +    D   A K + ++ + GL  PN   YN +I  F+ LN M+    
Sbjct: 637 LDVVAYSALIDGFCKMHDMESASKFFTELLDIGL-TPNTVVYNSMISGFIHLNNMEAALN 695

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +  ++  + +  DL  YT +I GL ++ K   A   + EM+ K ++P  V +  L  GL 
Sbjct: 696 LHQEMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLS 755

Query: 267 QSDMLRTWRRLKKKLDEESIT 287
            +  L    ++ K++D  +IT
Sbjct: 756 NNGQLENASKILKEMDGNNIT 776



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 125/263 (47%), Gaps = 11/263 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y S+I G+ K   +D A     EM E G+ P+V+TY  L++G+C+             I 
Sbjct: 572 YNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCK----------SNKIG 621

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++  +M+ +G++ DV ++S ++  + + H  + +      + + G+ P    Y+S++
Sbjct: 622 LALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMI 681

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                   +E A  L  EM++N V    + Y             + A+ LY +M    + 
Sbjct: 682 SGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDI- 740

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP++  Y +LI       +++   +I  ++ G+ + P +  Y +LI G   +   +EA +
Sbjct: 741 VPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPSVLVYNILIAGNFREGNLQEAFR 800

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
              EM++KGL+P   T++ L  G
Sbjct: 801 LHDEMLDKGLVPDDTTYDILVNG 823



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 142/340 (41%), Gaps = 60/340 (17%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-----ER 55
           +++ LI G  K+  ++ A      M   G++PNV   N LL G   +  L  +     E 
Sbjct: 362 IFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEA 421

Query: 56  FEKTIRN-------------------AEKVFDEMRVRGIEPDVTS--------------- 81
            E  I N                   A  ++++M  +GI P + S               
Sbjct: 422 VEHGITNVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMD 481

Query: 82  --FSIVLHVYSRAHQPQ-----LSLDK-------------LNFMKEKGICPTVATYSSVV 121
             +S++  +  R  +P      L +D                 M    I PT  T+++V+
Sbjct: 482 KAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVI 541

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   GR+ + ++ L   ++ G   ++ TYN     +      + A+  YR+M E G+ 
Sbjct: 542 NGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGIS 601

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +Y  LI      N++ +  E+ +D+K  G+  D+ +Y+ LI G C+    + A +
Sbjct: 602 -PDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASK 660

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
           +F E+++ GL P  V + ++  G I  + +     L +++
Sbjct: 661 FFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEM 700



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 130/296 (43%), Gaps = 21/296 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT++I    K      A R   EM+  G+  NV+    L+ G C    ++          
Sbjct: 293 YTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNL--------- 343

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++FDE+   G+ PDV  FS++++  S+    + + +    MK  GI P V   +S++
Sbjct: 344 -ALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLL 402

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +       +E A  L  E V +G+  +  TYN   K        N A  L+ +M   G+ 
Sbjct: 403 EGFHEQNLLEHAYGLFDEAVEHGIT-NVVTYNILLKWLGELGKVNEACNLWEKMVSKGI- 460

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ SYN LI        MD    +   +   GL P+  +YT+LI G  +K   + A  
Sbjct: 461 TPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFV 520

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQS-------DMLRTWRRLKKKLDEESITFGS 290
            F +M+   + P   TF T+  GL ++       D L  +  +K+     SIT+ S
Sbjct: 521 VFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNF--IKQGFVSTSITYNS 574



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 122/298 (40%), Gaps = 38/298 (12%)

Query: 6   IYGWC-----------KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSE 54
           IYG C           K  + +  E+F  E   RG+E +   Y++L+  VCRR  L+ + 
Sbjct: 216 IYGDCYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVCRRLDLNLAC 275

Query: 55  RFEKTIRN-------------------------AEKVFDEMRVRGIEPDVTSFSIVLHVY 89
              K +R                          A ++ DEM   G+  +V     ++  Y
Sbjct: 276 ELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGY 335

Query: 90  SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
                  L+L   + + E G+ P V  +S ++      G +E A EL   M   G+ P+ 
Sbjct: 336 CVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNV 395

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
              N   + +  +     A  L+ +  E G  + N+ +YNIL+     L +++    +W 
Sbjct: 396 FIVNSLLEGFHEQNLLEHAYGLFDEAVEHG--ITNVVTYNILLKWLGELGKVNEACNLWE 453

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            +   G+ P L SY  LI G C+K    +A      ++E+GL P  VT+  L  G  +
Sbjct: 454 KMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFK 511



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 133/284 (46%), Gaps = 12/284 (4%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +L+    + N +  A +   EM+ERG+  +  T +V++    +        +FE+     
Sbjct: 190 NLLTAMVRRNMVCDARQLYDEMVERGIYGDCYTLHVVMRACMKEG------KFEE----V 239

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
           EK F E + RG+E D  ++SI++    R     L+ + L  M+E G  P+  TY++V+  
Sbjct: 240 EKFFKEAKGRGLEVDAAAYSILVQAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVA 299

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
               G   +A  L  EMV  G+  +        K Y    D N A++L+ ++ E G+ VP
Sbjct: 300 CVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGV-VP 358

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           ++  +++LI     +  M+   E++  +K  G+ P++     L+ G  E+   + A   F
Sbjct: 359 DVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLF 418

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            E +E G +   VT+  L + L +   +     L +K+  + IT
Sbjct: 419 DEAVEHG-ITNVVTYNILLKWLGELGKVNEACNLWEKMVSKGIT 461



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 10/121 (8%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YTS+I G  K  ++ +A     EM+ + + P++V Y VL+NG+     L          
Sbjct: 711 VYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQL---------- 760

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            NA K+  EM    I P V  ++I++    R    Q +    + M +KG+ P   TY  +
Sbjct: 761 ENASKILKEMDGNNITPSVLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDIL 820

Query: 121 V 121
           V
Sbjct: 821 V 821



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 105/264 (39%), Gaps = 46/264 (17%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++  L+  + ++N+I  A      M+E  + P V   N LL  + RR            +
Sbjct: 152 VFNYLLKSFVRVNKITDAVECFRTMLEHDLVPWVPIMNNLLTAMVRR----------NMV 201

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
            +A +++DEM  RGI  D  +    LHV  RA            MKE             
Sbjct: 202 CDARQLYDEMVERGIYGDCYT----LHVVMRA-----------CMKE------------- 233

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
                  G+ E+ E+   E    G+   A  Y+   +    R D N A +L ++M+E G 
Sbjct: 234 -------GKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVCRRLDLNLACELLKEMREFG- 285

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            VP+  +Y  +I   +          + +++   GL  ++     L+ G C       A 
Sbjct: 286 WVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLAL 345

Query: 241 QYFVEMIEKGLLPQKVTFETLYRG 264
           Q F E++E G++P  V F  L  G
Sbjct: 346 QLFDEVVEGGVVPDVVIFSVLING 369



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 71/153 (46%), Gaps = 10/153 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y S+I G+  +N ++ A     EMI+  V  ++  Y  ++ G+ +   L          
Sbjct: 676 VYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLKEGKLSL-------- 727

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  ++ EM  + I PD+  ++++++  S   Q + +   L  M    I P+V  Y+ +
Sbjct: 728 --ALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPSVLVYNIL 785

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
           +      G +++A  L  EM+  G+ P   TY+
Sbjct: 786 IAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYD 818


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 134/281 (47%), Gaps = 11/281 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           ++ LI G CK   +  A     EM +RG+ P+  TY V+++G+CR           K + 
Sbjct: 199 FSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCR----------SKRVD 248

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A ++FD+M+  G+ PD  + + +L+ +    +   +   L   ++ G    V  YS ++
Sbjct: 249 DAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLI 308

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + L    R ED + L  +M+ + V P    Y    K          A++L  +M E G+ 
Sbjct: 309 RGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGV- 367

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           VP+   YN+LI  F  +  +   R +  ++      P++ +Y++LI G+C     ++A +
Sbjct: 368 VPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQE 427

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282
            F EM + G  P  VTF +L  GL ++  L     L  K++
Sbjct: 428 IFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKME 468



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 134/283 (47%), Gaps = 16/283 (5%)

Query: 13  NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV 72
           N + +A      M++    PNV T+++L++G+C+  +          +++A  +FDEM  
Sbjct: 175 NFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGN----------VKDALHLFDEMTQ 224

Query: 73  RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132
           RGI PD  ++ +V+    R+ +   +    + MK+ G+ P   T ++++   C   R+++
Sbjct: 225 RGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDE 284

Query: 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192
           A  LL    ++G       Y+C  +     K       LYR+M ED +  P+++ Y I++
Sbjct: 285 AFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNV-KPDVYLYTIMM 343

Query: 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                  ++    E+ N++  SG+ PD   Y +LI G C+     EA    +E+      
Sbjct: 344 KGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCF 403

Query: 253 PQKVTFETLYRGLIQSDMLRTWRRLKKKLDE-----ESITFGS 290
           P   T+  L  G+ ++ + R  + +  ++++      ++TF S
Sbjct: 404 PNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNS 446



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 130/275 (47%), Gaps = 13/275 (4%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  + K+   D A    G M +    P+V TYN++L+ + ++  L            A 
Sbjct: 132 LIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLL----------AL 181

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            V+  M      P+V +FSI++    ++   + +L   + M ++GI P   TY  V+  L
Sbjct: 182 TVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGL 241

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C   R++DA  L  +M  +GV P   T N     +      + A  L R  ++DG  V +
Sbjct: 242 CRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGY-VLD 300

Query: 185 MHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           +  Y+ LI G+F A  R + V+ ++  +    + PD+  YT+++ GL E  K ++A +  
Sbjct: 301 VRGYSCLIRGLFRA-KRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELL 359

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278
            EM E G++P  V +  L +G     +L   R L+
Sbjct: 360 NEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQ 394



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 133/313 (42%), Gaps = 69/313 (22%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ LI G  +  R +  +    +MIE  V+P+V  Y +++ G+               +R
Sbjct: 304 YSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGK----------VR 353

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLH------VYSRAHQPQLSLDKLNFMKEKGICPTVA 115
           +A ++ +EM   G+ PD   +++++       + S A   QL + + +        P V 
Sbjct: 354 DALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCF------PNVK 407

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC-----------------FFKE 158
           TYS ++  +C  G   DA+E+  EM + G  PSA T+N                  F+K 
Sbjct: 408 TYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKM 467

Query: 159 YRGRK---------------DANGAMKLYRQMKEDGLC---------------VPNMHSY 188
             GR                D+    K+  Q+ + GL                 P +++Y
Sbjct: 468 EIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTY 527

Query: 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
           NIL+  F  L   +   +++ +++  GL PD  +Y  LI+GL   Q+ ++A + F +M +
Sbjct: 528 NILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEK 587

Query: 249 KGLLPQKVTFETL 261
            G  P    + T+
Sbjct: 588 NGCTPDAAVYRTM 600



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 145/339 (42%), Gaps = 74/339 (21%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS----ERFE 57
           Y  +I G C+  R+D A R   +M + GV P+ VT N LLNG C    +  +      FE
Sbjct: 234 YCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFE 293

Query: 58  KT------------IR---------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           K             IR         + + ++ +M    ++PDV  ++I++   + A + +
Sbjct: 294 KDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVR 353

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L+ LN M E G+ P    Y+ ++K  C  G + +A  L  E+ R+   P+ +TY+   
Sbjct: 354 DALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILI 413

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI------------------------ 192
                      A +++ +M++ G C P+  ++N LI                        
Sbjct: 414 SGMCRNGLTRDAQEIFNEMEKLG-CYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRN 472

Query: 193 -GMFMALNR-----------MDMVREIWND------------VKGSGLGPDLDSYTMLIH 228
             +F+ L++             MV ++ +             +  SG  P + +Y +L++
Sbjct: 473 PSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVN 532

Query: 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
           G C+   +  A + F EM  KGL P  VT+ TL  GL++
Sbjct: 533 GFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLR 571



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 108/225 (48%), Gaps = 1/225 (0%)

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A + F  MR     PDV +++++L V  + +   L+L     M +    P VAT+S ++ 
Sbjct: 145 AMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILID 204

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            LC  G ++DA  L  EM + G+ P A TY          K  + A +L+ +MK+ G+  
Sbjct: 205 GLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVG- 263

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P+  + N L+  F  L+R+D    +    +  G   D+  Y+ LI GL   +++++    
Sbjct: 264 PDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLL 323

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
           + +MIE  + P    +  + +GL ++  +R    L  ++ E  + 
Sbjct: 324 YRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVV 368



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 119/279 (42%), Gaps = 43/279 (15%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +YT ++ G  +  ++  A   L EM E GV P+ V YNVL+ G C    L  +   +  I
Sbjct: 338 LYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEI 397

Query: 61  -------------------------RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                    R+A+++F+EM   G  P   +F+ ++    +  Q 
Sbjct: 398 SRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQ- 456

Query: 96  QLSLDKLNFMK-EKGICPTV--------------ATYSSVVKCLCSCGRIEDAEELLGEM 140
            L    L F K E G  P++              A+   +V+ LC  G I  A  +L ++
Sbjct: 457 -LEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQL 515

Query: 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200
             +G  P   TYN     +    + NGA KL+R+M+  GL  P+  +Y  LI   +   R
Sbjct: 516 ADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLS-PDTVTYGTLINGLLRFQR 574

Query: 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
            +   ++++ ++ +G  PD   Y  ++  +C + +   A
Sbjct: 575 EEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRA 613



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 10/134 (7%)

Query: 10  CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE 69
           C    I  A R L ++ + G  P + TYN+L+NG C+  + +           A K+F E
Sbjct: 500 CDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFN----------GAYKLFRE 549

Query: 70  MRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129
           M+ +G+ PD  ++  +++   R  + + +    + M++ G  P  A Y +++  +C    
Sbjct: 550 MQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRME 609

Query: 130 IEDAEELLGEMVRN 143
           +  A  L  + +RN
Sbjct: 610 LPRAFSLWLKYLRN 623



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 1/174 (0%)

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           +L    L  +K  GI      +  ++K     G  + A E  G M      P   TYN  
Sbjct: 108 ELYCQTLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMI 167

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                 +     A+ +Y +M +   C+PN+ +++ILI        +     +++++   G
Sbjct: 168 LDVLIQKNFLLLALTVYTRMMKLN-CLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRG 226

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           + PD  +Y ++I GLC  ++  +A + F +M + G+ P  VT   L  G    D
Sbjct: 227 ILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLD 280



 Score = 40.4 bits (93), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 43/168 (25%)

Query: 164 DANGAMKLYRQ----MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219
           + NG ++LY Q    +K  G+ V N  ++ +LI +++ +   D   E +  ++     PD
Sbjct: 103 NQNG-LELYCQTLEALKNGGIKVHN-DAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPD 160

Query: 220 LDSYTM-----------------------------------LIHGLCEKQKWKEACQYFV 244
           + +Y M                                   LI GLC+    K+A   F 
Sbjct: 161 VYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFD 220

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEF 292
           EM ++G+LP   T+  +  GL +S  +    RL  K+ +  +  G +F
Sbjct: 221 EMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGV--GPDF 266


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 150/327 (45%), Gaps = 32/327 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF----- 56
           +  +I G CK   +  A  FL EM+++G EPNV+TY +L++G C++     + +      
Sbjct: 375 FNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMS 434

Query: 57  --------------------EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
                               +  I++A +++ EM  +G +PD+ +F+ +++   +  + +
Sbjct: 435 AKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKME 494

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
            +L     M  +G+     TY++++        I+ A++L+GEM   G      TYN   
Sbjct: 495 EALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLI 554

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
           K           + L  QM  + +  P+++S NILI  F    +++   +   D+   GL
Sbjct: 555 KALCKTGATEKCLGLIEQMFGEEI-FPSINSCNILINSFCRTGKVNDALQFLRDMIQRGL 613

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL-----YRGLIQSDML 271
            PD+ +Y  LI+GLC+  +++EA   F  +  KG+ P  VT+ TL     Y GL      
Sbjct: 614 TPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQ 673

Query: 272 RTWRRLKKKLDEESITFGSEFQNYHFK 298
             ++ +        IT+ S   NY  K
Sbjct: 674 LLFKGVSNGFIPNEITW-SILINYFVK 699



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 129/268 (48%), Gaps = 11/268 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI   CK  +I  A +  GEM  +G +P++ T+N L+ G+C+      +++ E+   
Sbjct: 445 YNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCK------NDKMEE--- 495

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++ +M + G+  +  +++ ++H + R    Q +   +  M+ +G      TY+ ++
Sbjct: 496 -ALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLI 554

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC  G  E    L+ +M    + PS  + N     +      N A++  R M + GL 
Sbjct: 555 KALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGL- 613

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN LI     + R      ++N ++  G+ PD  +Y  LI   C +  + +ACQ
Sbjct: 614 TPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQ 673

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSD 269
              + +  G +P ++T+  L    ++++
Sbjct: 674 LLFKGVSNGFIPNEITWSILINYFVKNN 701



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 139/299 (46%), Gaps = 23/299 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  LI+   + NR++ A + L EM   G EP+V T+N +++G+C+   +H + +    +
Sbjct: 237 IYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRM 296

Query: 61  R----NAEKVFDEMRVRGI-----------------EPDVTSFSIVLHVYSRAHQPQLSL 99
                 A+ +     + G+                  P+   ++ +++ Y  + + + + 
Sbjct: 297 LLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPNPNTVLYNTLINGYVVSGRFEEAK 356

Query: 100 DKL-NFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158
           D L   M   G  P   T++ ++  LC  G +  A E L EMV+ G  P+  TY      
Sbjct: 357 DLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDG 416

Query: 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218
           +  +     A K+   M   GL + N   YN LIG      ++    +++ ++   G  P
Sbjct: 417 FCKQGHFEEASKVVNSMSAKGLSL-NTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKP 475

Query: 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           D+ ++  LI+GLC+  K +EA   + +M+ +G++   VT+ TL    ++ ++++   +L
Sbjct: 476 DIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKL 534



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 140/327 (42%), Gaps = 43/327 (13%)

Query: 8   GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVF 67
            +C +N +D A   L +M + G  PN + Y +L++      +L  + R    +  A K+ 
Sbjct: 209 AFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIH------ALSENNR----VNEAMKLL 258

Query: 68  DEMRVRGIEPDVTSFSIVLHVYSRA---HQPQLSLDKL---NFMKEK--------GIC-- 111
           +EM + G EPDV +F+ V+H   +A   H+     D++   +F  +         G+C  
Sbjct: 259 EEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRM 318

Query: 112 ---------------PTVATYSSVVKCLCSCGRIEDAEELL-GEMVRNGVCPSAETYNCF 155
                          P    Y++++      GR E+A++LL   MV  G  P A T+N  
Sbjct: 319 GKVDEARAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIM 378

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215
                 +     A++   +M + G   PN+ +Y ILI  F      +   ++ N +   G
Sbjct: 379 IDGLCKKGYLVSALEFLDEMVKKGF-EPNVITYTILIDGFCKQGHFEEASKVVNSMSAKG 437

Query: 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275
           L  +   Y  LI  LC+  K ++A Q + EM  KG  P   TF +L  GL ++D +    
Sbjct: 438 LSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEAL 497

Query: 276 RLKKKLDEESITFGSEFQNYHFKPYRR 302
            L + +  E +   +   N     + R
Sbjct: 498 GLYRDMLLEGVIANTVTYNTLIHAFLR 524



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 119/287 (41%), Gaps = 20/287 (6%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           L+ G C      +A     +M+ RG+ P V T+ V++   C              + +A 
Sbjct: 175 LVAGNCP----KVAPNVFYDMLSRGISPTVYTFGVVMKAFC----------MVNEVDSAC 220

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
            +  +M   G  P+   + +++H  S  ++   ++  L  M   G  P V T++ V+  L
Sbjct: 221 SLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGL 280

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  GRI +A +L   M+       A                + A  +  ++       PN
Sbjct: 281 CKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPN-----PN 335

Query: 185 MHSYNILIGMFMALNRMDMVRE-IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
              YN LI  ++   R +  ++ ++ ++  +G  PD  ++ ++I GLC+K     A ++ 
Sbjct: 336 TVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFL 395

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
            EM++KG  P  +T+  L  G  +        ++   +  + ++  +
Sbjct: 396 DEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNT 442



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 5/203 (2%)

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           + D   V   EP   S+++VL +    + P+++ +    M  +GI PTV T+  V+K  C
Sbjct: 152 LLDMWGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFC 211

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
               ++ A  LL +M ++G  P++  Y             N AMKL  +M   G C P++
Sbjct: 212 MVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMG-CEPDV 270

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
            ++N +I       R+    ++ + +       D      L+HGLC   K  EA      
Sbjct: 271 QTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEA----RA 326

Query: 246 MIEKGLLPQKVTFETLYRGLIQS 268
           M+ K   P  V + TL  G + S
Sbjct: 327 MLSKIPNPNTVLYNTLINGYVVS 349



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 98/219 (44%), Gaps = 2/219 (0%)

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP-QLSLDKLNFMKEKGICPTVATYSSVVK 122
           +K+  +M+  G     + F +++  Y +A  P Q +   L+        PT  +Y+ V++
Sbjct: 114 DKLLKQMKDEGCVFKESLFILIMRYYGKAGLPGQATRLLLDMWGVYCFEPTFKSYNVVLE 173

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
            L +    + A  +  +M+  G+ P+  T+    K +    + + A  L R M + G CV
Sbjct: 174 ILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHG-CV 232

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           PN   Y +LI      NR++   ++  ++   G  PD+ ++  +IHGLC+  +  EA + 
Sbjct: 233 PNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKL 292

Query: 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281
              M+ +      +    L  GL +   +   R +  K+
Sbjct: 293 HDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKI 331



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 1/149 (0%)

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P+ ++YN   +          A  ++  M   G+  P ++++ +++  F  +N +D    
Sbjct: 163 PTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGIS-PTVYTFGVVMKAFCMVNEVDSACS 221

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +  D+   G  P+   Y MLIH L E  +  EA +   EM   G  P   TF  +  GL 
Sbjct: 222 LLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLC 281

Query: 267 QSDMLRTWRRLKKKLDEESITFGSEFQNY 295
           ++  +    +L  ++     T  +  Q Y
Sbjct: 282 KAGRIHEAAKLHDRMLLRDFTADALIQGY 310


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 144/301 (47%), Gaps = 18/301 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + +LI G+CK+  +D+  R    M +    P+V TY+ L+N +C+          E  + 
Sbjct: 278 FNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCK----------ENKMD 327

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F EM  RG+ P+   F+ ++H +SR  Q  L  +    M  KG+ P +  Y+++V
Sbjct: 328 GAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLV 387

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              C  G +  A  ++  M+R G+ P   TY      +    D + A+++ ++M ++G+ 
Sbjct: 388 NGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIE 447

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +  +    ++ GM      +D  R +   ++ +G+ PD  +YTM++   C+K   +   +
Sbjct: 448 LDRVGFSALICGMCKEGRVIDAERALREMLR-AGMKPDDVTYTMMMDAFCKKGDAQTGFK 506

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ------SDMLRTWRRLKKKLDEESITFGSEFQNY 295
              EM   G +P  VT+  L  GL +      +DML     L   +  + IT+ +  + +
Sbjct: 507 LLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDA-MLNVGVVPDDITYNTLLEGH 565

Query: 296 H 296
           H
Sbjct: 566 H 566



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 135/268 (50%), Gaps = 14/268 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++T+LI+G  +  +ID+ +    +M+ +G++P++V YN L+NG C+   L          
Sbjct: 347 IFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVA-------- 398

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A  + D M  RG+ PD  +++ ++  + R      +L+    M + GI      +S++
Sbjct: 399 --ARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSAL 456

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  +C  GR+ DAE  L EM+R G+ P   TY      +  + DA    KL ++M+ DG 
Sbjct: 457 ICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDG- 515

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
            +PN+ +YN+L+     L +M     + + +   G+ PD  +Y  L+ G     +   A 
Sbjct: 516 HIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLEG---HHRHANAS 572

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           +++ +  E G++    ++++L   L ++
Sbjct: 573 KHYKQKPEIGIVADLASYKSLVNELYRA 600



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 126/283 (44%), Gaps = 16/283 (5%)

Query: 11  KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM 70
           K+N       F  E+++ G   NV  +N+L+N  C+          E  I +A+KVFDE+
Sbjct: 217 KLNPTGTVWGFYMEILDAGFPLNVYVFNILMNKFCK----------EGNICDAQKVFDEI 266

Query: 71  RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130
             R + P V SF+ +++ Y +     +     + M++    P V TYS+++  LC   ++
Sbjct: 267 TKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKM 326

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           + A  L  EM   G+ P+   +      +      +   + Y++M   GL  P++  YN 
Sbjct: 327 DGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGL-QPDIVLYNT 385

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           L+  F     +   R I + +   GL PD  +YT LI G C       A +   EM + G
Sbjct: 386 LVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNG 445

Query: 251 LLPQKVTFETLYRGLIQS----DMLRTWRR-LKKKLDEESITF 288
           +   +V F  L  G+ +     D  R  R  L+  +  + +T+
Sbjct: 446 IELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTY 488


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 140/286 (48%), Gaps = 11/286 (3%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +++ G C  +R+  A   +  M+  G +PN  TY  +LN +C+  +            +A
Sbjct: 200 TIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGN----------TASA 249

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
             +  +M  R I+P V +++I++    +  +   +L   + M+ KGI   V TY+S++  
Sbjct: 250 LDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGS 309

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
            CS GR +D  +LL +M+   + P+  T++              A  LY +M   G+  P
Sbjct: 310 FCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGI-EP 368

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N  +YN LI       R+D   ++ + +   G  PD+ +Y +LI+G C+ ++  +  + F
Sbjct: 369 NTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLF 428

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289
            +M  +G++   VT+ TL +G  QS  L   +++ +++  + +  G
Sbjct: 429 RKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPG 474



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 137/276 (49%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +++LI    K  ++  A+    EMI RG+EPN +TYN L+ G+C           +K + 
Sbjct: 338 FSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCN----------DKRLD 387

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ D M  +G +PD+ +++I+++ + +A Q    +     M  +G+     TYS+++
Sbjct: 388 EANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLI 447

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           +  C   ++  A+++  EMV  GV P   TY           +   A+ +  QM +  + 
Sbjct: 448 QGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKME 507

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + ++  YNI+I      N++D    ++  +   G+  D+ SY +++ GLC++    EA  
Sbjct: 508 L-DIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADA 566

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
            F +M E G  P   T+ TL R  ++ + + T  +L
Sbjct: 567 LFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQL 602



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 125/245 (51%), Gaps = 11/245 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT +I   CK  R+D A  F  EM  +G++ NV TYN L+   C         R++    
Sbjct: 268 YTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFG------RWD---- 317

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +  ++  +M  R I P+V +FS ++    +  +   + D  N M  +GI P   TY+S++
Sbjct: 318 DGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLI 377

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC+  R+++A +++  MV  G  P   TYN     +   K  +  M+L+R+M   G+ 
Sbjct: 378 YGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGM- 436

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + +  +Y+ LI  F    ++ + ++++ ++   G+ P + +Y +L+ GLC+  + +EA  
Sbjct: 437 IADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALG 496

Query: 242 YFVEM 246
              +M
Sbjct: 497 ILDQM 501



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 153/323 (47%), Gaps = 35/323 (10%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRA--------------SL 50
           +I  +C+  ++  A   +G++ + G EPN VT+N LLNG+C                 S 
Sbjct: 131 MINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQ 190

Query: 51  H-PSERFEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99
           H P      TI N          A  +   M   G +P+  ++  +L+   ++     +L
Sbjct: 191 HVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASAL 250

Query: 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159
           D L  M+ + I P V TY+ ++  LC  GR++DA     EM   G+  +  TYN     +
Sbjct: 251 DLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSF 310

Query: 160 --RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217
              GR D +GA +L R M    +  PN+ +++ LI   +   ++   ++++N++   G+ 
Sbjct: 311 CSFGRWD-DGA-QLLRDMITRKI-TPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIE 367

Query: 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS----DMLRT 273
           P+  +Y  LI+GLC  ++  EA Q    M+ KG  P   T+  L  G  ++    D +R 
Sbjct: 368 PNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRL 427

Query: 274 WRRLK-KKLDEESITFGSEFQNY 295
           +R++  + +  +++T+ +  Q +
Sbjct: 428 FRKMSLRGMIADTVTYSTLIQGF 450



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 128/264 (48%), Gaps = 11/264 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++   CK      A   L +M  R ++P+VVTY ++++ +C+   L  +  F     
Sbjct: 233 YGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSF----- 287

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                F EM  +GI+ +V +++ ++  +    +       L  M  + I P V T+S+++
Sbjct: 288 -----FSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALI 342

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G++ +A++L  EM+  G+ P+  TYN         K  + A ++   M   G C
Sbjct: 343 DSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKG-C 401

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YNILI  F    ++D    ++  +   G+  D  +Y+ LI G C+ +K   A +
Sbjct: 402 DPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKK 461

Query: 242 YFVEMIEKGLLPQKVTFETLYRGL 265
            F EM+ +G+ P  +T+  L  GL
Sbjct: 462 VFQEMVSQGVHPGIMTYAILLDGL 485



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 123/276 (44%), Gaps = 15/276 (5%)

Query: 16  DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI 75
           D+      +M  +G+  ++ T N+++N  CRR  L  +           K+F      G 
Sbjct: 107 DLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFA------FSAMGKIFK----LGY 156

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135
           EP+  +F+ +L+      +   +++ ++ M      P + T +++V  LC   R+ +A +
Sbjct: 157 EPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVD 216

Query: 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195
           L+  M+ NG  P+  TY           +   A+ L R+M+   +  P++ +Y I+I   
Sbjct: 217 LIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKI-KPHVVTYTIIIDNL 275

Query: 196 MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
               R+D     +++++  G+  ++ +Y  LI   C   +W +  Q   +MI + + P  
Sbjct: 276 CKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNV 335

Query: 256 VTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSE 291
           VTF  L   L++   L       K L  E IT G E
Sbjct: 336 VTFSALIDSLVKEGKLTE----AKDLYNEMITRGIE 367



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 89/179 (49%), Gaps = 10/179 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y++LI G+C+  ++ +A++   EM+ +GV P ++TY +LL+G+C    L           
Sbjct: 443 YSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELE---------- 492

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + D+M    +E D+  ++I++H    A++   +      +  KG+   + +Y+ ++
Sbjct: 493 EALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIML 552

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
             LC    + +A+ L  +M  +G  P   TYN   + +    D   +++L  +MK  G 
Sbjct: 553 SGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGF 611



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 10/126 (7%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y  +I+G C  N++D A      +  +GV+ ++ +YN++L+G+C+R+SL          
Sbjct: 512 IYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLS--------- 562

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A+ +F +M+  G EPD  +++ ++  + R +    S+  +  MK  G     +T   V
Sbjct: 563 -EADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIV 621

Query: 121 VKCLCS 126
           +  L S
Sbjct: 622 MDMLSS 627



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 36/235 (15%)

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  +F  M      P V  F+ +  + +R  Q  L L     M+ KGI   + T + ++
Sbjct: 73  DAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMI 132

Query: 122 KC-----------------------------------LCSCGRIEDAEELLGEMVRNGVC 146
            C                                   LC  GR+ +A EL+  MV +   
Sbjct: 133 NCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHV 192

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P   T N        +   + A+ L  +M  +G C PN  +Y  ++             +
Sbjct: 193 PDLITLNTIVNGLCLKDRVSEAVDLIARMMANG-CQPNQFTYGPILNRMCKSGNTASALD 251

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
           +   ++   + P + +YT++I  LC+  +  +A  +F EM  KG+     T+ +L
Sbjct: 252 LLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSL 306



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 1/139 (0%)

Query: 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190
           +DA  L   M+R+   P+   +N  F      K  +  + L +QM+  G+   ++++ NI
Sbjct: 72  DDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAY-DLYTLNI 130

Query: 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250
           +I  F    ++         +   G  P+  ++  L++GLC + +  EA +    M+   
Sbjct: 131 MINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQ 190

Query: 251 LLPQKVTFETLYRGLIQSD 269
            +P  +T  T+  GL   D
Sbjct: 191 HVPDLITLNTIVNGLCLKD 209


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 145/284 (51%), Gaps = 19/284 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNG---------------VCR 46
           Y+++I+G+C + ++  A  FL EM+ + + P+V  YN L++                V  
Sbjct: 241 YSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIV 300

Query: 47  RASLHPSERFEKTIRN--AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNF 104
           +  L P+     T+ +  A+ VF+ + + G+ PDV S++I+++   +  + + +L+    
Sbjct: 301 KTCLKPNVITYNTLIDGYAKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKE 360

Query: 105 MKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164
           M +K + P   TY+S++  LC  GRI  A +L+ EM   G   +  TYN           
Sbjct: 361 MHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQ 420

Query: 165 ANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSY 223
            + A+ L  +MK+ G+  P+M++ NIL+ G+     R+   + ++ D+   G  P++ +Y
Sbjct: 421 LDKAIALINKMKDQGI-QPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTY 479

Query: 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267
            ++I+G C++    EA     +M + G  P  +TF+ +   L++
Sbjct: 480 NIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIICALLE 523



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 138/286 (48%), Gaps = 21/286 (7%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +LI G CKI     A + L  +  R  EPNVV YN +++ +C+R          K + 
Sbjct: 171 YGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKR----------KLVS 220

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  +F EM V+GI  +V ++S ++H +    +   +L  LN M  K I P V  Y+++V
Sbjct: 221 EACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLV 280

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK-DANGAMKLYRQMKEDGL 180
             L   G++++A+ +L  +V+  + P+  TYN     Y     +A G M +         
Sbjct: 281 DALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKHVFNAVGLMGV--------- 331

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             P++ SYNI+I     + R++    ++ ++    + P+  +Y  LI GLC+  +   A 
Sbjct: 332 -TPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAW 390

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
               EM ++G     +T+ +L  GL ++  L     L  K+ ++ I
Sbjct: 391 DLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGI 436



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 132/294 (44%), Gaps = 44/294 (14%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           LI  +C + +I++A   L ++++ G +P+ VT   L+ G+C +  +  +  F        
Sbjct: 104 LINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFH------- 156

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
              D++  +G   D  S+  +++   +  + + ++  L  +  +   P V  Y++++ CL
Sbjct: 157 ---DKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCL 213

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C    + +A  L  EM   G+  +  TY+     +        A+    +M    +  P+
Sbjct: 214 CKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAIN-PD 272

Query: 185 MHSYNILIGMFMALNRMDMVRE------------------------------IWNDVKGS 214
           ++ YN L+    AL++   V+E                              ++N V   
Sbjct: 273 VYIYNTLVD---ALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKHVFNAVGLM 329

Query: 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           G+ PD+ SY ++I+ LC+ ++ +EA   + EM +K ++P  VT+ +L  GL +S
Sbjct: 330 GVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKS 383



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 5/191 (2%)

Query: 77  PDVTSFSIVLHVYSR-AHQPQL-SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
           P +  F+ +L  +++  H P + SL +   ++ K I P   T + ++ C C  G+I  A 
Sbjct: 61  PPIIQFNKILDSFAKMKHYPTVVSLSRR--LELKAIQPDFFTLNILINCFCHLGQINLAF 118

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194
            +L ++++ G  P   T     K    +     A+  + ++   G  +  + SY  LI  
Sbjct: 119 SVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQV-SYGTLING 177

Query: 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254
              +       ++   + G    P++  Y  +I  LC+++   EAC  F EM  KG+   
Sbjct: 178 VCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISAN 237

Query: 255 KVTFETLYRGL 265
            VT+  +  G 
Sbjct: 238 VVTYSAIIHGF 248



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 65/136 (47%), Gaps = 1/136 (0%)

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P    +N     +   K     + L R+++   +  P+  + NILI  F  L ++++   
Sbjct: 61  PPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAI-QPDFFTLNILINCFCHLGQINLAFS 119

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           + + +   G  PD  + T LI GLC K + K+A  +  +++ +G    +V++ TL  G+ 
Sbjct: 120 VLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYGTLINGVC 179

Query: 267 QSDMLRTWRRLKKKLD 282
           +    R   +L +++D
Sbjct: 180 KIGETRAAIQLLRRID 195


>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 889

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 133/289 (46%), Gaps = 15/289 (5%)

Query: 3   TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRN 62
           +SL+ G     R+  A   +G+MIE+G+  N + + VLL+   +R            +  
Sbjct: 515 SSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGD----------VVG 564

Query: 63  AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122
           A+ ++ EM  RGI PDV +FS  +   S+    + + +    M  KG+ P    Y+S++ 
Sbjct: 565 AQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLIC 624

Query: 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182
             C CG++ +A +L   M   G+ P   T N        +     A+ ++  M + GL  
Sbjct: 625 GFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLS- 683

Query: 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242
           P++ +YN LI  +     M     + N +  SG  PDL +Y + IHG C  ++   A   
Sbjct: 684 PDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLM 743

Query: 243 FVEMIEKGLLPQKVTFETLYRG----LIQSDMLRTWRRLKKKLDEESIT 287
             E++  G++P  VT+ ++  G    ++   M+ T R LK       +T
Sbjct: 744 LDELVSAGIVPNTVTYNSMLNGVCSDILDRAMILTARLLKMAFVPNVVT 792



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 143/323 (44%), Gaps = 59/323 (18%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           MY +L+ G+ K+  ID A     EM ++G+ P+ +T+N+L++G  +       +R  K I
Sbjct: 373 MYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDI 432

Query: 61  R-------------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                      A +   +M  +G+ P + +F+ V+  YS+A   
Sbjct: 433 SVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLE 492

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             + +    M   G+ P+ +T SS++  L   GR+++A EL+G+M+  G+  +   +   
Sbjct: 493 DKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVL 552

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGL----------------------------------C 181
             ++  R D  GA  L+ +M+  G+                                   
Sbjct: 553 LDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGL 612

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +PN  +YN LI  F    +++   ++   ++  GL PD+ +  M+I GLC++ + + A  
Sbjct: 613 IPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAIN 672

Query: 242 YFVEMIEKGLLPQKVTFETLYRG 264
            F++M + GL P  +T+ TL  G
Sbjct: 673 VFMDMHQTGLSPDIITYNTLING 695



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 146/341 (42%), Gaps = 67/341 (19%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----------- 50
           Y  +I   C   R   A  +   MIERG  P VVT+N ++N  C+  ++           
Sbjct: 304 YNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLK 363

Query: 51  ----HPSERFEKTIRN----------AEKVFDEMRVRGIEPDVTSFSIVL---HVYSRAH 93
                P+     T+ N          A  +++EMR +GI PD  +F+I++   + Y R  
Sbjct: 364 EMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREE 423

Query: 94  QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153
                L  ++ +   G+ P  + +   V  LC  GR+++A E L +M+  G+ PS   +N
Sbjct: 424 DGDRLLKDISVL---GLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFN 480

Query: 154 CFFKEYR--GRKD-----------------------------ANG----AMKLYRQMKED 178
                Y   G +D                              NG    A +L  QM E 
Sbjct: 481 SVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEK 540

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           GL V NM ++ +L+  F     +   + +W +++  G+ PD+ +++  I GL ++   +E
Sbjct: 541 GLSVNNM-AFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEE 599

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279
           A   F+EM+ KGL+P    + +L  G  +   L    +L+K
Sbjct: 600 AYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEK 640



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 120/251 (47%), Gaps = 11/251 (4%)

Query: 20  RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDV 79
           +   ++I RG +P   T++ ++ G CR+  +H            E +   M     EP+ 
Sbjct: 252 KLFKDVIRRGPQPCKYTFSGIILGFCRKGCIHL----------GESLLHLMPKFHCEPNA 301

Query: 80  TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139
            +++IV++      +   +L   N M E+G  PTV T+++V+   C  G + +A +L   
Sbjct: 302 FAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDG 361

Query: 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199
           +   G  P+A  YN     Y   ++ + A  LY +M++ G+  P+  ++NIL+       
Sbjct: 362 LKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGI-APDGITFNILVSGHYKYG 420

Query: 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259
           R +    +  D+   GL PD   + + + GLC   +  EA ++ ++M+EKGL P  + F 
Sbjct: 421 REEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFN 480

Query: 260 TLYRGLIQSDM 270
           ++     Q+ +
Sbjct: 481 SVIAAYSQAGL 491



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 98/194 (50%), Gaps = 12/194 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI G+CK  +++ A +    M  RG+ P++ T N+++ G+C++  +          R
Sbjct: 619 YNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRM----------R 668

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  VF +M   G+ PD+ +++ +++ Y +A     + + +N M   G  P + TY+  +
Sbjct: 669 SAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRI 728

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
              CS  R+  A  +L E+V  G+ P+  TYN            + AM L  ++ +    
Sbjct: 729 HGFCSSRRMNRAVLMLDELVSAGIVPNTVTYNSMLNGV-CSDILDRAMILTARLLKMAF- 786

Query: 182 VPNMHSYNILIGMF 195
           VPN+ + N+L+  F
Sbjct: 787 VPNVVTANLLLSQF 800



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 115/283 (40%), Gaps = 16/283 (5%)

Query: 18  AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77
           A   LG M E GV P+     +L   + R               N  K+F ++  RG +P
Sbjct: 215 ALEILGRMREVGVRPSASGVAILFKLLLRVGDYG----------NVWKLFKDVIRRGPQP 264

Query: 78  DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137
              +FS ++  + R     L    L+ M +    P    Y+ V+   C  GR  DA    
Sbjct: 265 CKYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWF 324

Query: 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197
             M+  G  P+  T+N     +    +   A KL+  +KE G   PN   YN L+  ++ 
Sbjct: 325 NLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFS-PNAIMYNTLMNGYVK 383

Query: 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257
           +  +D    ++ +++  G+ PD  ++ +L+ G  +  + ++  +   ++   GLLP +  
Sbjct: 384 MREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSL 443

Query: 258 FETLYRGL-----IQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
           F+    GL     +   M      L+K L    I F S    Y
Sbjct: 444 FDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAY 486



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 36/224 (16%)

Query: 76  EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA-------------------- 115
           E D +    ++  +  A     +L+ L  M+E G+ P+ +                    
Sbjct: 193 ESDFSVLDSLMRAFVNAEMGFQALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWK 252

Query: 116 ---------------TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160
                          T+S ++   C  G I   E LL  M +    P+A  YN       
Sbjct: 253 LFKDVIRRGPQPCKYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACC 312

Query: 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220
            R   + A+  +  M E G C P + ++N +I  F     +   R++++ +K  G  P+ 
Sbjct: 313 IRGRTSDALAWFNLMIERG-CNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNA 371

Query: 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264
             Y  L++G  + ++  +A   + EM +KG+ P  +TF  L  G
Sbjct: 372 IMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSG 415


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 139/289 (48%), Gaps = 17/289 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  ++   CK  ++D A+  + EM   G+ P+VVTY+ L++G+C+   L           
Sbjct: 342 YNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLD---------- 391

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  + +EM   G+ PD  + + +L+  S+A +   +L  L  MK +G  P + TY++++
Sbjct: 392 RACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLL 451

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC  GRI++A   L +MV     P   +Y            A GA  ++++M + G+ 
Sbjct: 452 DGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGV- 510

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           +P+   Y+ L+         D+  E+   +K S   PD   + M++ GLC+  K ++AC+
Sbjct: 511 LPDTVLYHSLLDGLARNGLEDLALEL---LKTSLCKPDFVMHKMVVDGLCKAGKAEDACE 567

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
               M + G      T+  + RGL +   +   R+L   +D+ S T  S
Sbjct: 568 VVERMADAGFPADAFTYINVVRGLRKLGKVDKARQL---VDDASETHTS 613



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 136/286 (47%), Gaps = 29/286 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           + SL+ G C   R+  A      M + G EPNV++Y+ LL+G+C+   L  + R      
Sbjct: 147 FNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRL----- 201

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
                ++EM  +   PD+ +++  +    +A++   + D    M  KG       +S+V+
Sbjct: 202 -----WEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVI 256

Query: 122 KCLCSCGRIEDAE-ELLGEMVRNGVC----------------PSAETYNCFFKEYRGRKD 164
             LC  G  E+A+ +++  + R+G+                 PSAE +N         K 
Sbjct: 257 GILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKR 316

Query: 165 ANGAMKLYRQMK--EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS 222
               + L+++MK  ++  C PN+ +YNI++       ++D  +E+ N++   GL PD+ +
Sbjct: 317 LPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVT 376

Query: 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           Y+ L+ GLC+  K   AC    EM ++G+ P   T  ++   L ++
Sbjct: 377 YSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKA 422



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 126/266 (47%), Gaps = 8/266 (3%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           +I   C+   +D A +   EMI R   P+   +N L++ VC+   L       + +++ +
Sbjct: 272 MIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMK 331

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
           + +         P++ +++I++    +A Q   + + +N M   G+ P V TYS++V  L
Sbjct: 332 EFY-------CPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGL 384

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184
           C  G+++ A +LL EM + GV P + T              + A+     MK  G   P+
Sbjct: 385 CKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARG-STPD 443

Query: 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244
           + +YN L+       R+D        +  +   PD+ SYT++I  LC   +   A   F 
Sbjct: 444 LVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQ 503

Query: 245 EMIEKGLLPQKVTFETLYRGLIQSDM 270
           EM+++G+LP  V + +L  GL ++ +
Sbjct: 504 EMVKRGVLPDTVLYHSLLDGLARNGL 529



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 115/211 (54%), Gaps = 1/211 (0%)

Query: 60  IRNAEKVFDEM-RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           I    ++FD + R +G +  V +++  L   ++A+  QL+ +K   M+ +G  P   TYS
Sbjct: 18  ISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYS 77

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
            V++ LC  G ++ A+ELLG++  +GV  +  TY+            + A+++++ M   
Sbjct: 78  IVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAG 137

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G CVP++ ++N L+    +  RM     ++  +  +G  P++ SY+ L+ GLC+  +  E
Sbjct: 138 GGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDE 197

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269
           AC+ + EM+EK  +P  V + +   GL +++
Sbjct: 198 ACRLWEEMVEKSCVPDLVAYTSFVTGLCKAN 228



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 113/236 (47%), Gaps = 12/236 (5%)

Query: 27  ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
           ++G + +V TYN  L+ + +  +   +  +EK        F +M+ RG  PD  ++SIVL
Sbjct: 31  QKGYQHSVFTYNCFLDALAKANAGQLA--YEK--------FQQMQRRGYPPDDFTYSIVL 80

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
               +A +   + + L  ++E G+   V TYS V+   C   R++DA E+   M   G C
Sbjct: 81  RGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGC 140

Query: 147 -PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205
            P   T+N   K     +  + A  L+  M + G C PN+ SY+ L+       R+D   
Sbjct: 141 VPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAG-CEPNVISYSTLLDGLCKAGRLDEAC 199

Query: 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261
            +W ++      PDL +YT  + GLC+  +  EAC    +M+ KG     V F T+
Sbjct: 200 RLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTV 255



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 142/346 (41%), Gaps = 62/346 (17%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+ ++ G CK   +D A+  LG++ E GV+ NV+TY+V+++G C+ + +  +    KT+ 
Sbjct: 76  YSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMS 135

Query: 62  --------------------------NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                                      A  +F+ M   G EP+V S+S +L    +A + 
Sbjct: 136 AGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRL 195

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
             +      M EK   P +  Y+S V  LC   R+ +A +   +MV  G    A  ++  
Sbjct: 196 DEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTV 255

Query: 156 FKEYRGRKDANGAMK-----LYRQMKEDGLC-----------VPNMHSYNILI------- 192
                 +  A  A       L R    D  C            P+   +N LI       
Sbjct: 256 IGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSK 315

Query: 193 ----GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248
               G+ +   RM  ++E +         P+L++Y +++  LC+ ++  EA +   EM  
Sbjct: 316 RLPDGVLL-FQRMKSMKEFY-------CPPNLETYNIMVDNLCKAKQLDEAQELVNEMAN 367

Query: 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
            GL P  VT+  L  GL +   L     L +++ +E + F   F +
Sbjct: 368 YGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGV-FPDSFTD 412


>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
 gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
          Length = 637

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 134/276 (48%), Gaps = 11/276 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  L+ G C+ + ++ A     E++  G+ PN V +  L++G C+      ++RF +   
Sbjct: 251 YNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTLIDGFCK------AKRFSE--- 301

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A+ +F +M   G+ P V  ++ ++    R+   Q +L     M   G+CP   T S VV
Sbjct: 302 -AKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVV 360

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           + LC  G+I+ A   L  +  +GV  +A  YN    EY    +   A+    +M E G+ 
Sbjct: 361 RGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRMTEVGV- 419

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            PN+ SY+ LI     L +M +   I+ ++   G+ P++ +YT LIHG  +      A +
Sbjct: 420 EPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFR 479

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277
           +  EMIE G+ P  +T   L  GL + + ++   R 
Sbjct: 480 FHKEMIENGISPNAITVSVLVDGLCRENRVQDAVRF 515



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 123/299 (41%), Gaps = 46/299 (15%)

Query: 4   SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNA 63
           +++ G  K  R   A     EM+ RG+ P+VVTYN L+N            R++  +  A
Sbjct: 148 AVLDGLVKARRSRCAWELFDEMLRRGMVPSVVTYNTLINAC----------RYQGAVAKA 197

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC 123
           ++++D+M  R I+P+V                                    TY+S++  
Sbjct: 198 QEMWDQMVARQIDPNVI-----------------------------------TYTSMICV 222

Query: 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183
           LC  G I DAE L   M   G+ P+  TYN     +    D N A  LY+++   GL +P
Sbjct: 223 LCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGL-IP 281

Query: 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243
           N   +  LI  F    R    ++++ D+   G+ P +  Y  L+ G       +EA   +
Sbjct: 282 NAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLY 341

Query: 244 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR 302
            EM   GL P + T   + RGL     ++   R  + + E+ +   +   N     Y R
Sbjct: 342 QEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCR 400



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 131/286 (45%), Gaps = 11/286 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YTS+I   C+   I  AER    M E G+ PN  TYNVL++G C+             + 
Sbjct: 216 YTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQ----------GDDVN 265

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
           +A  ++ E+   G+ P+   F+ ++  + +A +   + D    M   G+ PTV  Y+S++
Sbjct: 266 SAFVLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLM 325

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                 G  ++A  L  EM R G+CP   T +   +          A +    ++EDG+ 
Sbjct: 326 DGAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVN 385

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N  +YN LI  +     ++        +   G+ P++ SY+ LI G  +  K + A  
Sbjct: 386 L-NAAAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMA 444

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287
            + EM+ KG+ P  VT+  L  G  ++  +    R  K++ E  I+
Sbjct: 445 IYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENGIS 490



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 123/282 (43%), Gaps = 28/282 (9%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           ++T+LI G+CK  R   A+    +M   GV P V  YN L++G  R              
Sbjct: 285 VFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGD----------A 334

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           + A  ++ EM   G+ PD  + SIV+       Q Q++   L  ++E G+    A Y+++
Sbjct: 335 QEALSLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNAL 394

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +   C  G +E+A      M   GV P+  +Y+     +        AM +Y +M   G+
Sbjct: 395 IDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGI 454

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
             PN+ +Y  LI        +D       ++  +G+ P+  + ++L+ GLC + + ++A 
Sbjct: 455 -EPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDAV 513

Query: 241 QYFVEMI-----------------EKGLLPQKVTFETLYRGL 265
           ++ +E                   E+ L+P    + TL  GL
Sbjct: 514 RFVMEHSGIKYSDIHSFFSNFTTEEEPLIPNSAIYMTLIYGL 555



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 122/268 (45%), Gaps = 28/268 (10%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE 64
           ++ G C   +I +A RFL  + E GV  N   YN L++  CR  +L   E      R  E
Sbjct: 359 VVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLE--EALATCTRMTE 416

Query: 65  KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124
                    G+EP+V S+S ++  +S+  + Q+++     M  KGI P V TY++++   
Sbjct: 417 V--------GVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGH 468

Query: 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNC----------------FFKEYRGRKDANGA 168
              G I+ A     EM+ NG+ P+A T +                 F  E+ G K ++  
Sbjct: 469 AKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDAVRFVMEHSGIKYSDIH 528

Query: 169 MKLYRQMKEDGLCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227
                   E+   +PN   Y  LI G+++     +   ++++ ++ SG+  D  +YT+LI
Sbjct: 529 SFFSNFTTEEEPLIPNSAIYMTLIYGLYLDGQHYE-AGKLFSYMRKSGMISDSFTYTLLI 587

Query: 228 HGLCEKQKWKEACQYFVEMIEKGLLPQK 255
            G C       A   + +M++ G+ P +
Sbjct: 588 RGQCMLGYVLNAMMLYADMMKIGVKPMR 615



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 97/195 (49%), Gaps = 7/195 (3%)

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           P + + + VL    +A + + + +  + M  +G+ P+V TY++++      G +  A+E+
Sbjct: 141 PALPACNAVLDGLVKARRSRCAWELFDEMLRRGMVPSVVTYNTLINACRYQGAVAKAQEM 200

Query: 137 LGEMVRNGVCPSAETYN---CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193
             +MV   + P+  TY    C   E     DA    +L+  MKE G+  PN ++YN+L+ 
Sbjct: 201 WDQMVARQIDPNVITYTSMICVLCEEGCIGDAE---RLFDAMKEAGM-RPNQYTYNVLMS 256

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
                + ++    ++ ++  SGL P+   +T LI G C+ +++ EA   F +M   G+ P
Sbjct: 257 GHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAP 316

Query: 254 QKVTFETLYRGLIQS 268
               + +L  G  +S
Sbjct: 317 TVPVYNSLMDGAFRS 331


>gi|15222150|ref|NP_172763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200670|sp|Q9SAD9.1|PPR40_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g13040, mitochondrial; Flags: Precursor
 gi|4850387|gb|AAD31057.1|AC007357_6 F3F19.6 [Arabidopsis thaliana]
 gi|332190841|gb|AEE28962.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 141/304 (46%), Gaps = 21/304 (6%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI G+CK  RI+ AE     M + G EP++VTYNVLLN                 +
Sbjct: 222 VYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYD----------NNML 271

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDK-LNFM----KEKGICPTVA 115
           + AE V  EM   GI+ D  S++ +L  + R   P    DK  NFM    + +G C  V 
Sbjct: 272 KRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHP----DKCYNFMVKEMEPRGFCDVV- 326

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
           +YS++++  C       A  L  EM + G+  +  TY    K +    +++ A KL  QM
Sbjct: 327 SYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQM 386

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
            E GL  P+   Y  ++        +D    ++ND+    + PD  SY  LI GLC   +
Sbjct: 387 TELGLS-PDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGR 445

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295
             EA + F +M  K   P ++TF+ +  GLI+   L    ++  ++ ++  T   +  + 
Sbjct: 446 VTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYKVWDQMMDKGFTLDRDVSDT 505

Query: 296 HFKP 299
             K 
Sbjct: 506 LIKA 509



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 143/324 (44%), Gaps = 51/324 (15%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y+  I G CK+ + D+ +  L +M   G  P++  +NV L+ +CR          E  + 
Sbjct: 82  YSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCR----------ENKVG 131

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A + F  M  RG EPDV S++I+++   RA +   +++  N M   G+ P     +++V
Sbjct: 132 FAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALV 191

Query: 122 KCLCSCGRIEDAEELLGEMVRNG-VCPSAETYNCFFKEY--RGRKDANGAMKLYRQMKED 178
             LC   +++ A E++ E +++  V  S   YN     +   GR +   A+K Y  M + 
Sbjct: 192 VGLCHARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEALKSY--MSKI 249

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP-------------------- 218
           G C P++ +YN+L+  +   N +     +  ++  SG+                      
Sbjct: 250 G-CEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPDK 308

Query: 219 ---------------DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
                          D+ SY+ LI   C     ++A + F EM +KG++   VT+ +L +
Sbjct: 309 CYNFMVKEMEPRGFCDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIK 368

Query: 264 GLIQSDMLRTWRRLKKKLDEESIT 287
             ++       ++L  ++ E  ++
Sbjct: 369 AFLREGNSSVAKKLLDQMTELGLS 392



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 107/232 (46%), Gaps = 13/232 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFL-GEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           Y  L+   C+++  D    F+  EM  RG   +VV+Y+ L+   CR ++           
Sbjct: 293 YNQLLKRHCRVSHPDKCYNFMVKEMEPRGF-CDVVSYSTLIETFCRASN----------T 341

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
           R A ++F+EMR +G+  +V +++ ++  + R     ++   L+ M E G+ P    Y+++
Sbjct: 342 RKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTI 401

Query: 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
           +  LC  G ++ A  +  +M+ + + P A +YN              A+KL+  MK    
Sbjct: 402 LDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKE- 460

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232
           C P+  ++  +IG  +   ++    ++W+ +   G   D D    LI   C 
Sbjct: 461 CCPDELTFKFIIGGLIRGKKLSAAYKVWDQMMDKGFTLDRDVSDTLIKASCS 512



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/262 (20%), Positives = 112/262 (42%), Gaps = 10/262 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y   I    + +R ++AE    +M   G      TY+  ++G+C+       ++F+    
Sbjct: 47  YNRFIGVLVRESRFELAEAIYWDMKPMGFSLIPFTYSRFISGLCK------VKKFDLI-- 98

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
             + +  +M   G  PD+ +F++ L +  R ++   ++     M ++G  P V +Y+ ++
Sbjct: 99  --DALLSDMETLGFIPDIWAFNVYLDLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILI 156

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             L   G++ DA E+   M+R+GV P  +            +  + A ++  +  +    
Sbjct: 157 NGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVDLAYEMVAEEIKSARV 216

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +   YN LI  F    R++    + + +   G  PDL +Y +L++   +    K A  
Sbjct: 217 KLSTVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEG 276

Query: 242 YFVEMIEKGLLPQKVTFETLYR 263
              EM+  G+     ++  L +
Sbjct: 277 VMAEMVRSGIQLDAYSYNQLLK 298



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 96/226 (42%), Gaps = 4/226 (1%)

Query: 60  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS 119
           I NA +VFDEMR          ++  + V  R  + +L+      MK  G      TYS 
Sbjct: 25  IDNAVQVFDEMRHSSYRVFSFDYNRFIGVLVRESRFELAEAIYWDMKPMGFSLIPFTYSR 84

Query: 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
            +  LC   + +  + LL +M   G  P    +N +            A++ +  M + G
Sbjct: 85  FISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCRENKVGFAVQTFFCMVQRG 144

Query: 180 LCVPNMHSYNILI-GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
              P++ SY ILI G+F A    D V EIWN +  SG+ PD  +   L+ GLC  +K   
Sbjct: 145 R-EPDVVSYTILINGLFRAGKVTDAV-EIWNAMIRSGVSPDNKACAALVVGLCHARKVDL 202

Query: 239 ACQYFVEMIEKGLLP-QKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283
           A +   E I+   +    V +  L  G  ++  +     LK  + +
Sbjct: 203 AYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEALKSYMSK 248



 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 7/167 (4%)

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
            Y S +  L   G I++A ++  EM  +     +  YN F            A  +Y  M
Sbjct: 11  AYRSRIANLVKSGMIDNAVQVFDEMRHSSYRVFSFDYNRFIGVLVRESRFELAEAIYWDM 70

Query: 176 KEDGLC-VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234
           K  G   +P   +Y+  I     + + D++  + +D++  G  PD+ ++ + +  LC + 
Sbjct: 71  KPMGFSLIP--FTYSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCREN 128

Query: 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTWRRL 277
           K   A Q F  M+++G  P  V++  L  GL +    +D +  W  +
Sbjct: 129 KVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAM 175


>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 793

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 142/320 (44%), Gaps = 45/320 (14%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLL-------------------- 41
           YT+L+  + + +R   A      M+  G++P +VTYNV+L                    
Sbjct: 181 YTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVVALVDSM 240

Query: 42  --NGV-------------CRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86
             +G+             CRR +L+         + A KVFDEMR  G EPD  +F+ +L
Sbjct: 241 KNDGIPLDRYTYNTLISCCRRGALY---------KEAAKVFDEMRAAGFEPDKVTFNSLL 291

Query: 87  HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146
            VY +A     ++  L  M+  G  P+V TY+S++      G +++A EL  EM   G+ 
Sbjct: 292 DVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQ 351

Query: 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206
           P   TY             + A+  Y +M  +G C PN+ +YN LI +     +   +  
Sbjct: 352 PDVITYTTLISGLDRAGKIDAAIGTYDEMLRNG-CKPNLCTYNALIKLHGVRGKFPEMMA 410

Query: 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266
           +++D++ +G  PD+ ++  L+    +     E    F EM + G +P++ T+ +L     
Sbjct: 411 VFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYS 470

Query: 267 QSDMLRTWRRLKKKLDEESI 286
           +  +      + K++ E  I
Sbjct: 471 RCGLFDQSMEIYKRMIEAGI 490



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 119/274 (43%), Gaps = 19/274 (6%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y SLI  + +    D +      MIE G+ P++ TYN +L+ + R        R+E+   
Sbjct: 462 YVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGG------RWEQ--- 512

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            AEK+F EM      PD  S+S +LH Y+ A +    LDK+  + E      + ++  +V
Sbjct: 513 -AEKLFAEMENLDCRPDELSYSSLLHAYANAKK----LDKMKALSEDIYAEKIESHHGLV 567

Query: 122 KCLC----SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 177
           K L         + + E+   E+ R          N     Y   +      ++   MK 
Sbjct: 568 KTLVLVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKG 627

Query: 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237
             + + +  +YN L+ M+  L   +    I  ++K SG  PD  SY  +I+    K + K
Sbjct: 628 SSINL-STATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMK 686

Query: 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271
           EA + F EM   GL+P  VT+    +  + + M 
Sbjct: 687 EASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMF 720



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

Query: 31  EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90
           EP+   Y  L++   R      + RF    R+A  VF  M   GI+P + ++++VLHVYS
Sbjct: 175 EPDASAYTALVSAFSR------ASRF----RDAVAVFRRMVANGIQPAIVTYNVVLHVYS 224

Query: 91  RAHQPQLSLDKL-NFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149
           +   P   +  L + MK  GI     TY++++ C       ++A ++  EM   G  P  
Sbjct: 225 KIAVPWKDVVALVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDK 284

Query: 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209
            T+N     Y   +  + A+ + ++M E G C P++ +YN LI  ++    +    E+  
Sbjct: 285 VTFNSLLDVYGKARMHDEAIGVLKEM-ELGGCPPSVVTYNSLISSYVKDGLLKEAAELKE 343

Query: 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263
           +++  G+ PD+ +YT LI GL    K   A   + EM+  G  P   T+  L +
Sbjct: 344 EMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIK 397



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 110/270 (40%), Gaps = 26/270 (9%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHP--------- 52
           Y +++    +  R + AE+   EM      P+ ++Y+ LL+       L           
Sbjct: 497 YNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMKALSEDIY 556

Query: 53  SERFEK----------------TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ 96
           +E+ E                  +   EK F E+  R    D+   + ++ VY +    +
Sbjct: 557 AEKIESHHGLVKTLVLVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVK 616

Query: 97  LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156
              + L+ MK   I  + ATY+S++      G  E  E +L E+  +G  P   +YN   
Sbjct: 617 KVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMI 676

Query: 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216
             Y  +     A +L+ +MK  GL +P++ +YNI +  ++A +  +   ++   +   G 
Sbjct: 677 YAYGRKGQMKEASRLFSEMKSSGL-IPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGC 735

Query: 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246
            P+  +Y  ++   C   K  +A  +   +
Sbjct: 736 KPNERTYNSILQEYCRHGKIADAKSFLSNL 765


>gi|125524449|gb|EAY72563.1| hypothetical protein OsI_00429 [Oryza sativa Indica Group]
          Length = 535

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 130/256 (50%), Gaps = 14/256 (5%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  ++ GWC    +  A+R   E+I   ++P++ TY   +N + +   L           
Sbjct: 255 WNIILNGWCVKGSLADAKRVWNEIIASKLKPDLFTYGTFINSLTKSGKLS---------- 304

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A K+F  M  +GI PDV   + ++       +   +L+    M ++G    VATY++++
Sbjct: 305 TAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIFGEMNDRGCQADVATYNTLI 364

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K  C   R+E   ELL +M   GV P+  TY+   K     KD    + L ++M++ G C
Sbjct: 365 KHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYILKTTEKPKDV---ISLMQRMEKSG-C 420

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
             +  +YN+++ ++++ +    V+ +W++++ +G GPD  S+T+++HGL    K  EA  
Sbjct: 421 RLDSDTYNLILNLYVSWDYEKGVQLVWDEMERNGSGPDQRSFTIMVHGLHSHGKLDEALH 480

Query: 242 YFVEMIEKGLLPQKVT 257
           Y+  M  +G+ P+  T
Sbjct: 481 YYRTMESRGMTPEPRT 496



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 99/208 (47%), Gaps = 4/208 (1%)

Query: 58  KTIRNAEKVFDEMRVRGIEPDVTS--FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA 115
           K +R   ++FDE+ +   +  +T+  F+++L+ Y+ AH+ Q ++D     K+ G    + 
Sbjct: 160 KKVRLMRQLFDEIPMESRQSVITNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLV 219

Query: 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175
            +  ++  LC    +E+AE L  +  ++   P  +++N     +  +     A +++ ++
Sbjct: 220 GFQILLMSLCRYKHVEEAEALFLQK-KDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEI 278

Query: 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235
               L  P++ +Y   I       ++    +++  +   G+ PD+     +I  LC K++
Sbjct: 279 IASKL-KPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKR 337

Query: 236 WKEACQYFVEMIEKGLLPQKVTFETLYR 263
             EA + F EM ++G      T+ TL +
Sbjct: 338 IPEALEIFGEMNDRGCQADVATYNTLIK 365


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 133/285 (46%), Gaps = 11/285 (3%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           +  +I G  K   +  A   L EM+ +  EPNV+TY +L+NG C++  L           
Sbjct: 380 FNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRL----------E 429

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++ + M  +G+  +   ++ ++    +    + +L     M  KG  P + T++S++
Sbjct: 430 EAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLI 489

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
             LC   ++E+A  L  +M   GV  +  TYN     +  R     A KL  +M   G  
Sbjct: 490 NGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCP 549

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
           + N+ +YN LI        ++    ++ ++ G G+ P + S  +LI GLC   K  +A +
Sbjct: 550 LDNI-TYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALK 608

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286
           +  +MI +GL P  VT+ +L  GL +   ++    L  KL  E I
Sbjct: 609 FLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGI 653



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 127/269 (47%), Gaps = 16/269 (5%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI 60
           +Y +LI+  C+ NR+  A + L +M     EP+V T+N +++G+CR   +H         
Sbjct: 242 IYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIH--------- 292

Query: 61  RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV 120
             A K+ D M +RG   D  ++  ++H   R  Q    +D+   +  K   P    Y+++
Sbjct: 293 -EAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQ----VDEARALLNKIPNPNTVLYNTL 347

Query: 121 VKCLCSCGRIEDAEELL-GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179
           +    + GR E+A++LL   MV  G  P A T+N        +     A++L  +M    
Sbjct: 348 ISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKR 407

Query: 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239
              PN+ +Y ILI  F    R++   EI N +   GL  +   Y  LI  LC+    +EA
Sbjct: 408 F-EPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEA 466

Query: 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
            Q F EM  KG  P   TF +L  GL ++
Sbjct: 467 LQLFGEMSGKGCKPDIYTFNSLINGLCKN 495



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 125/266 (46%), Gaps = 11/266 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y  LI   CK   I+ A +  GEM  +G +P++ T+N L+NG+C+    H  E       
Sbjct: 450 YNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKN---HKMEE------ 500

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A  ++ +M + G+  +  +++ ++H +      Q +   ++ M  +G      TY+ ++
Sbjct: 501 -ALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLI 559

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
           K LC  G +E    L  EM+  G+ P+  + N            N A+K  + M   GL 
Sbjct: 560 KALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGL- 618

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P++ +YN LI     +  +     ++N ++  G+ PD  +Y  LI   C +  + +AC 
Sbjct: 619 TPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACL 678

Query: 242 YFVEMIEKGLLPQKVTFETLYRGLIQ 267
              + ++ G +P +VT+  L   +++
Sbjct: 679 LLYKGVDSGFIPNEVTWSILINYIVK 704



 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 126/260 (48%), Gaps = 11/260 (4%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           YT LI G+CK  R++ A   +  M  +G+  N V YN L+  +C+          +  I 
Sbjct: 415 YTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCK----------DGNIE 464

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
            A ++F EM  +G +PD+ +F+ +++   + H+ + +L   + M  +G+     TY+++V
Sbjct: 465 EALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLV 524

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181
                   I+ A +L+ EM+  G      TYN   K           + L+ +M   G+ 
Sbjct: 525 HAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGI- 583

Query: 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241
            P + S NILI       +++   +   D+   GL PD+ +Y  LI+GLC+    +EA  
Sbjct: 584 FPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASN 643

Query: 242 YFVEMIEKGLLPQKVTFETL 261
            F ++  +G+ P  +T+ TL
Sbjct: 644 LFNKLQSEGIRPDAITYNTL 663



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 116/275 (42%), Gaps = 16/275 (5%)

Query: 17  MAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIE 76
           +A     +M+ RGV P V T+ V++  +C  +           + +A  +  +M   G  
Sbjct: 188 VAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSE----------VDSACSLLRDMAKHGCV 237

Query: 77  PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136
           P+   +  ++H     ++   +L  L  M      P V T++ V+  LC  GRI +A +L
Sbjct: 238 PNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKL 297

Query: 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196
           L  M+  G    A TY             + A  L  ++       PN   YN LI  ++
Sbjct: 298 LDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPN-----PNTVLYNTLISGYV 352

Query: 197 ALNRMDMVREI-WNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255
           A  R +  +++ +N++  +G  PD  ++ ++I GL +K     A +   EM+ K   P  
Sbjct: 353 ASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNV 412

Query: 256 VTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290
           +T+  L  G  +   L     +   +  + ++  +
Sbjct: 413 ITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNT 447



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 7/236 (2%)

Query: 64  EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSSVVK 122
           EK+  +M+  G+    + F +++  Y +A  P  +   L  M     C PT  +Y+ V+ 
Sbjct: 119 EKLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVYSCDPTFKSYNVVLD 178

Query: 123 CLCS--CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180
            L    C R+  A  +  +M+  GV P+  T+    K      + + A  L R M + G 
Sbjct: 179 ILVDGDCPRV--APNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHG- 235

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240
           CVPN   Y  LI      NR+    ++  D+      PD+ ++  +IHGLC   +  EA 
Sbjct: 236 CVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAA 295

Query: 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL-DEESITFGSEFQNY 295
           +    M+ +G     +T+  L  GL +   +   R L  K+ +  ++ + +    Y
Sbjct: 296 KLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPNTVLYNTLISGY 351



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 8/233 (3%)

Query: 66  VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125
           + D   V   +P   S+++VL +      P+++ +    M  +G+ PTV T+  V+K LC
Sbjct: 157 LLDMWGVYSCDPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALC 216

Query: 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185
               ++ A  LL +M ++G  P++  Y             + A++L   M     C P++
Sbjct: 217 MVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFL-MCCEPDV 275

Query: 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245
            ++N +I       R+    ++ + +   G   D  +Y  L+HGLC   +  EA      
Sbjct: 276 QTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEA----RA 331

Query: 246 MIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFK 298
           ++ K   P  V + TL  G + S     +   K  L    +  G E   Y F 
Sbjct: 332 LLNKIPNPNTVLYNTLISGYVASG---RFEEAKDLLYNNMVIAGYEPDAYTFN 381


>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Brachypodium distachyon]
          Length = 801

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 158/333 (47%), Gaps = 44/333 (13%)

Query: 1   MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPS-ERFE-- 57
           +YT L+   C   RI+ A R L  M E G  P+ VTY V L+G+C+   +  +  RFE  
Sbjct: 251 IYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELL 310

Query: 58  --------------------KTIRNAEKV--FDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95
                               +  R  E +  + EM  + I PD+T ++I++  ++ A + 
Sbjct: 311 QDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRT 370

Query: 96  QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155
           + +   L+ MK+KG  P    Y++++K L   G I+ A+ L+ EM++N V   + T+N  
Sbjct: 371 KDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIM 430

Query: 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK--- 212
                 +   + AM+++ +M E G C P + +YN LI        ++  R +++ ++   
Sbjct: 431 ICGLCKKGLIDKAMQVFDEMGEHG-CHPTVMTYNALIDGLYRAGMLEEARMLFHKMEMGN 489

Query: 213 ----------GSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262
                     G+    D +S   L+ G+C+  +  +A +    +IE G++P  VT+ TL 
Sbjct: 490 NPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLI 549

Query: 263 RGLIQSDMLRTWRRLKKKL-----DEESITFGS 290
            GL ++  L    RL K+L       + IT+G+
Sbjct: 550 NGLCKAKNLDGALRLFKELQLKGISPDEITYGT 582



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 114/281 (40%), Gaps = 48/281 (17%)

Query: 15  IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74
           I +A      M+  G  PN  TY VL++G+C+R              +A K+FDEM    
Sbjct: 195 ILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRG----------MAVDALKMFDEML--- 241

Query: 75  IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134
                                           E+GI P V  Y+ ++  LC+ GRIEDA 
Sbjct: 242 --------------------------------ERGIVPDVKIYTVLLSSLCNEGRIEDAG 269

Query: 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-G 193
            LL  M  NG  P   TY  F          + A   +  +++ G  +  +  Y+ LI G
Sbjct: 270 RLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTL-GLIGYSCLIDG 328

Query: 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253
           +F A  R D     + ++ G  + PD+  YT+LI    E  + K+A     EM +KG +P
Sbjct: 329 LFQA-GRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVP 387

Query: 254 QKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294
               + TL + L     +   + L  ++ + ++   S   N
Sbjct: 388 DTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHN 428



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 122/263 (46%), Gaps = 28/263 (10%)

Query: 2   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIR 61
           Y +L+     +  ID A+  + EM++  V  +  T+N+++ G+C++            I 
Sbjct: 392 YNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKG----------LID 441

Query: 62  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMK-EKGICPTV------ 114
            A +VFDEM   G  P V +++ ++    RA    L   ++ F K E G  P++      
Sbjct: 442 KAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGM--LEEARMLFHKMEMGNNPSLFLRLTL 499

Query: 115 --------ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166
                    +   +V  +C  G++  A +LL  ++ +GV P   TYN         K+ +
Sbjct: 500 GANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLD 559

Query: 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226
           GA++L+++++  G+  P+  +Y  LI      +R +    ++ ++  SG  P L  Y  +
Sbjct: 560 GALRLFKELQLKGIS-PDEITYGTLIDGLWRAHRENDATMLFQNILRSGGFPSLPIYNTM 618

Query: 227 IHGLCEKQKWKEACQYFVEMIEK 249
           +  LC  +K  +A   +++ + K
Sbjct: 619 MRSLCRMKKLSQAINLWLDYLPK 641



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 4/210 (1%)

Query: 62  NAEKVFDEM---RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYS 118
           +A  +FD +   R  G+     +F  ++  +S A + Q +++  + M +    PT   Y+
Sbjct: 124 DAVAMFDALADARAAGLPAPSAAFRALVLAHSSAGRHQEAVEAFSRMGDFDCRPTAFVYN 183

Query: 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178
           +V + L   G I  A  L   MV +G  P++ TY         R  A  A+K++ +M E 
Sbjct: 184 AVFQVLVDRGVILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLER 243

Query: 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238
           G+ VP++  Y +L+       R++    +   +K +G  PD  +YT+ + GLC+  +  E
Sbjct: 244 GI-VPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDE 302

Query: 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268
           A   F  + + G     + +  L  GL Q+
Sbjct: 303 AFHRFELLQDGGFTLGLIGYSCLIDGLFQA 332



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 117/288 (40%), Gaps = 42/288 (14%)

Query: 5   LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-FEKT-IRN 62
           +I G CK   ID A +   EM E G  P V+TYN L++G+ R   L  +   F K  + N
Sbjct: 430 MICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHKMEMGN 489

Query: 63  AEKVFDEMRVRGIEP-DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121
              +F  + +   +  D  S   ++    ++ Q   +   L  + E G+ P V TY++++
Sbjct: 490 NPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLI 549

Query: 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE-YRGRKDANGAMKLYRQMKEDGL 180
             LC    ++ A  L  E+   G+ P   TY       +R  ++ +  M     ++  G 
Sbjct: 550 NGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRENDATMLFQNILRSGGF 609

Query: 181 CVPNMHSYNILIGMFMALNRMDMVREIWNDV--KGSGLGPD---------------LDS- 222
             P++  YN ++     + ++     +W D   K   L P+               LD  
Sbjct: 610 --PSLPIYNTMMRSLCRMKKLSQAINLWLDYLPKKYNLSPEDEVIANARKCFEDGFLDET 667

Query: 223 ------------------YTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252
                             YT+ + GLC+ +K  +A + F  + E G++
Sbjct: 668 VKELIKIDQVYGSLNPNPYTIWVIGLCQVRKIDDALRIFHILEEFGIV 715


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.138    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,617,452,086
Number of Sequences: 23463169
Number of extensions: 184331924
Number of successful extensions: 576160
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5626
Number of HSP's successfully gapped in prelim test: 4126
Number of HSP's that attempted gapping in prelim test: 432068
Number of HSP's gapped (non-prelim): 57734
length of query: 302
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 161
effective length of database: 9,050,888,538
effective search space: 1457193054618
effective search space used: 1457193054618
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 76 (33.9 bits)