Query 022131
Match_columns 302
No_of_seqs 519 out of 1367
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 08:16:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 5.8E-53 1.3E-57 371.7 33.0 288 2-300 475-764 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.5E-52 3.3E-57 369.1 33.0 291 1-302 439-731 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.5E-47 3.3E-52 333.8 27.2 283 1-302 191-474 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 2E-46 4.3E-51 333.9 27.6 287 1-302 255-637 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 1.1E-45 2.5E-50 329.0 25.6 283 1-302 154-436 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1.9E-45 4.1E-50 320.7 26.1 292 1-301 125-437 (697)
7 PRK11788 tetratricopeptide rep 99.9 8.5E-22 1.8E-26 162.1 28.5 273 2-291 72-354 (389)
8 PRK11788 tetratricopeptide rep 99.9 7.4E-21 1.6E-25 156.5 30.4 263 7-285 43-312 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 3.4E-19 7.4E-24 161.7 31.8 266 2-287 604-869 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 6.1E-19 1.3E-23 160.0 30.8 263 2-284 570-832 (899)
11 PRK15174 Vi polysaccharide exp 99.8 2.2E-16 4.7E-21 136.8 30.3 190 89-284 187-381 (656)
12 PRK15174 Vi polysaccharide exp 99.8 4.1E-16 8.9E-21 135.1 31.4 263 5-286 82-349 (656)
13 PF13429 TPR_15: Tetratricopep 99.8 1.8E-18 3.8E-23 135.6 12.6 261 5-283 14-276 (280)
14 KOG4422 Uncharacterized conser 99.8 1.2E-15 2.6E-20 118.5 27.3 276 1-290 209-596 (625)
15 TIGR00990 3a0801s09 mitochondr 99.8 2.8E-15 6.2E-20 130.0 30.3 258 12-286 307-573 (615)
16 TIGR00990 3a0801s09 mitochondr 99.8 9.1E-15 2E-19 126.9 33.4 263 5-285 133-497 (615)
17 KOG4626 O-linked N-acetylgluco 99.7 5.1E-15 1.1E-19 120.2 24.0 270 2-281 119-448 (966)
18 KOG4422 Uncharacterized conser 99.7 1.2E-14 2.7E-19 113.0 23.8 253 31-297 204-475 (625)
19 KOG4626 O-linked N-acetylgluco 99.7 6.3E-15 1.4E-19 119.7 22.6 269 2-291 221-492 (966)
20 PRK10747 putative protoheme IX 99.7 1.2E-13 2.7E-18 113.2 29.2 215 57-282 131-388 (398)
21 PRK09782 bacteriophage N4 rece 99.7 5.3E-13 1.1E-17 119.2 31.7 256 4-282 482-738 (987)
22 TIGR00540 hemY_coli hemY prote 99.7 3E-13 6.5E-18 111.5 27.1 221 57-282 166-397 (409)
23 PRK11447 cellulose synthase su 99.7 3.8E-13 8.3E-18 124.4 30.4 258 5-282 467-738 (1157)
24 PRK11447 cellulose synthase su 99.7 8.8E-13 1.9E-17 122.0 31.6 262 7-285 359-701 (1157)
25 KOG1155 Anaphase-promoting com 99.6 2.9E-12 6.4E-17 100.8 27.9 263 7-284 235-536 (559)
26 PF13429 TPR_15: Tetratricopep 99.6 4.1E-15 8.9E-20 116.6 11.8 226 5-248 50-276 (280)
27 TIGR02521 type_IV_pilW type IV 99.6 1.4E-12 3.1E-17 99.4 25.4 204 77-284 29-232 (234)
28 PRK09782 bacteriophage N4 rece 99.6 2.7E-12 5.9E-17 114.7 29.6 232 33-286 476-708 (987)
29 COG2956 Predicted N-acetylgluc 99.6 6.8E-12 1.5E-16 94.5 26.5 225 11-249 47-278 (389)
30 COG3071 HemY Uncharacterized e 99.6 1.7E-11 3.7E-16 94.9 28.4 257 11-283 96-389 (400)
31 PRK10747 putative protoheme IX 99.6 4.3E-12 9.2E-17 104.2 26.7 221 57-287 97-360 (398)
32 PRK12370 invasion protein regu 99.6 7.1E-12 1.5E-16 107.2 29.0 260 13-286 275-537 (553)
33 PRK10049 pgaA outer membrane p 99.6 1.7E-11 3.7E-16 108.8 31.9 277 3-284 120-456 (765)
34 PRK12370 invasion protein regu 99.6 9E-12 1.9E-16 106.6 28.9 238 32-283 254-501 (553)
35 KOG1126 DNA-binding cell divis 99.6 9.6E-13 2.1E-17 107.8 21.4 202 77-285 419-621 (638)
36 TIGR02521 type_IV_pilW type IV 99.6 8.3E-12 1.8E-16 95.2 25.1 202 32-248 29-231 (234)
37 TIGR00540 hemY_coli hemY prote 99.6 7.9E-12 1.7E-16 103.1 26.4 265 10-292 95-372 (409)
38 PRK10049 pgaA outer membrane p 99.6 2E-11 4.3E-16 108.4 30.1 263 5-285 21-340 (765)
39 PRK14574 hmsH outer membrane p 99.6 2.3E-11 5E-16 106.8 29.5 224 57-284 115-396 (822)
40 KOG4318 Bicoid mRNA stability 99.5 4.9E-13 1.1E-17 112.7 16.4 248 20-299 11-280 (1088)
41 KOG2003 TPR repeat-containing 99.5 1.8E-11 3.8E-16 96.7 22.8 256 7-270 427-709 (840)
42 PRK14574 hmsH outer membrane p 99.5 1.8E-10 4E-15 101.3 30.9 90 6-108 109-198 (822)
43 PF13041 PPR_2: PPR repeat fam 99.5 7.3E-14 1.6E-18 78.4 6.6 49 218-266 1-49 (50)
44 COG2956 Predicted N-acetylgluc 99.5 2.4E-10 5.2E-15 86.4 26.1 261 4-284 74-347 (389)
45 KOG1129 TPR repeat-containing 99.5 1E-11 2.2E-16 93.9 18.7 230 38-284 227-458 (478)
46 KOG1129 TPR repeat-containing 99.5 6.3E-12 1.4E-16 95.0 17.3 212 78-295 222-435 (478)
47 KOG1155 Anaphase-promoting com 99.5 9E-11 1.9E-15 92.7 23.5 222 57-283 240-494 (559)
48 PF13041 PPR_2: PPR repeat fam 99.5 1.8E-13 4E-18 76.7 6.3 49 77-125 1-49 (50)
49 COG3063 PilF Tfp pilus assembl 99.4 6.7E-10 1.4E-14 80.2 22.1 199 81-283 37-235 (250)
50 COG3071 HemY Uncharacterized e 99.4 2.1E-09 4.5E-14 83.6 26.2 189 57-254 200-395 (400)
51 KOG1840 Kinesin light chain [C 99.4 3.1E-10 6.7E-15 93.7 22.7 240 33-282 198-477 (508)
52 KOG1126 DNA-binding cell divis 99.4 1.7E-10 3.6E-15 95.0 20.3 230 4-249 358-620 (638)
53 KOG1840 Kinesin light chain [C 99.4 4.8E-10 1E-14 92.5 23.0 235 3-247 203-477 (508)
54 KOG2076 RNA polymerase III tra 99.4 5.1E-09 1.1E-13 89.3 29.0 187 10-209 150-340 (895)
55 KOG4318 Bicoid mRNA stability 99.4 4E-11 8.6E-16 101.6 15.6 239 1-270 27-286 (1088)
56 KOG2002 TPR-containing nuclear 99.4 5.8E-10 1.3E-14 95.6 22.7 270 3-288 456-749 (1018)
57 PF12569 NARP1: NMDA receptor- 99.3 1E-08 2.3E-13 85.7 28.4 255 7-279 12-329 (517)
58 KOG2076 RNA polymerase III tra 99.3 1.4E-08 3.1E-13 86.7 29.2 267 2-282 176-510 (895)
59 PRK11189 lipoprotein NlpI; Pro 99.3 5.8E-09 1.3E-13 82.3 25.0 225 15-260 42-275 (296)
60 COG3063 PilF Tfp pilus assembl 99.3 9.3E-09 2E-13 74.4 23.0 209 36-261 37-246 (250)
61 KOG0547 Translocase of outer m 99.3 1.4E-09 3E-14 86.7 20.6 153 91-248 338-490 (606)
62 KOG0495 HAT repeat protein [RN 99.3 2.4E-08 5.3E-13 82.7 28.2 266 1-285 518-783 (913)
63 PRK11189 lipoprotein NlpI; Pro 99.3 3.8E-09 8.3E-14 83.3 23.0 221 57-287 39-268 (296)
64 KOG2003 TPR repeat-containing 99.2 4.8E-09 1E-13 83.2 20.4 207 11-235 502-709 (840)
65 KOG2002 TPR-containing nuclear 99.2 4.8E-08 1E-12 84.2 27.3 265 7-284 207-481 (1018)
66 KOG1173 Anaphase-promoting com 99.2 1.5E-08 3.3E-13 82.3 22.9 258 7-281 252-515 (611)
67 KOG0495 HAT repeat protein [RN 99.2 1E-07 2.3E-12 79.1 27.6 265 8-290 593-886 (913)
68 PF04733 Coatomer_E: Coatomer 99.2 1.4E-09 3.1E-14 84.6 15.6 251 7-284 9-265 (290)
69 KOG0547 Translocase of outer m 99.2 1.6E-08 3.4E-13 80.9 20.0 219 11-248 338-565 (606)
70 KOG1070 rRNA processing protei 99.2 9.2E-08 2E-12 85.5 26.6 236 31-281 1455-1697(1710)
71 PF12569 NARP1: NMDA receptor- 99.2 3.3E-07 7.2E-12 76.9 28.9 236 4-248 43-333 (517)
72 KOG1173 Anaphase-promoting com 99.2 7.5E-08 1.6E-12 78.4 23.4 247 5-268 284-535 (611)
73 cd05804 StaR_like StaR_like; a 99.1 3E-07 6.6E-12 75.0 26.1 268 8-285 52-337 (355)
74 KOG1915 Cell cycle control pro 99.1 1.9E-06 4.1E-11 69.2 28.3 260 7-285 149-467 (677)
75 cd05804 StaR_like StaR_like; a 99.1 1.8E-06 3.8E-11 70.5 28.7 269 3-285 10-294 (355)
76 PF04733 Coatomer_E: Coatomer 99.0 3E-08 6.5E-13 77.3 16.0 223 5-255 41-269 (290)
77 PLN02789 farnesyltranstransfer 99.0 1.8E-06 4E-11 68.3 25.7 213 3-232 41-267 (320)
78 KOG1174 Anaphase-promoting com 99.0 9.2E-07 2E-11 69.7 22.9 156 121-283 341-499 (564)
79 KOG1125 TPR repeat-containing 99.0 3.4E-07 7.4E-12 74.9 20.7 252 8-277 294-564 (579)
80 KOG1128 Uncharacterized conser 99.0 1.6E-07 3.6E-12 78.7 18.5 207 57-285 411-617 (777)
81 PF12854 PPR_1: PPR repeat 99.0 1.3E-09 2.9E-14 54.9 4.0 32 215-246 2-33 (34)
82 KOG1070 rRNA processing protei 98.9 1.7E-06 3.6E-11 77.8 24.5 226 2-242 1461-1693(1710)
83 PRK10370 formate-dependent nit 98.9 1.4E-06 3E-11 64.3 20.5 156 86-258 23-181 (198)
84 KOG1128 Uncharacterized conser 98.9 2.7E-07 5.9E-12 77.5 18.3 228 5-264 404-632 (777)
85 TIGR03302 OM_YfiO outer membra 98.9 4.8E-07 1E-11 69.2 18.6 188 77-284 31-232 (235)
86 KOG1915 Cell cycle control pro 98.9 1.6E-05 3.5E-10 64.1 27.6 156 127-287 379-539 (677)
87 TIGR03302 OM_YfiO outer membra 98.9 1.1E-06 2.4E-11 67.2 20.3 172 57-249 46-232 (235)
88 KOG2047 mRNA splicing factor [ 98.9 8.6E-06 1.9E-10 67.9 25.7 210 2-216 251-508 (835)
89 PLN02789 farnesyltranstransfer 98.9 5.7E-06 1.2E-10 65.6 24.0 218 57-281 50-299 (320)
90 PF12854 PPR_1: PPR repeat 98.9 3.7E-09 8E-14 53.3 3.9 34 249-282 1-34 (34)
91 COG5010 TadD Flp pilus assembl 98.8 3.2E-06 7E-11 62.7 19.6 154 85-243 72-225 (257)
92 KOG1125 TPR repeat-containing 98.8 4.9E-07 1.1E-11 74.0 16.7 217 57-280 298-523 (579)
93 COG5010 TadD Flp pilus assembl 98.8 9.4E-06 2E-10 60.3 21.2 163 113-281 66-228 (257)
94 PRK10370 formate-dependent nit 98.8 1.2E-06 2.5E-11 64.7 16.1 127 92-223 52-181 (198)
95 PRK15179 Vi polysaccharide bio 98.8 2E-05 4.3E-10 69.0 25.2 133 78-214 85-217 (694)
96 PRK15359 type III secretion sy 98.8 2.6E-06 5.7E-11 59.5 16.4 94 152-248 27-120 (144)
97 PRK15359 type III secretion sy 98.8 2.1E-06 4.6E-11 60.0 15.9 95 82-178 27-121 (144)
98 KOG3060 Uncharacterized conser 98.7 1.3E-05 2.9E-10 59.2 19.7 187 57-248 25-219 (289)
99 KOG4340 Uncharacterized conser 98.7 8.1E-06 1.8E-10 61.9 19.0 264 2-281 13-336 (459)
100 PRK15179 Vi polysaccharide bio 98.7 8.5E-06 1.8E-10 71.2 22.0 145 111-260 83-227 (694)
101 KOG3060 Uncharacterized conser 98.7 3.4E-05 7.4E-10 57.2 21.5 188 12-214 25-220 (289)
102 KOG1174 Anaphase-promoting com 98.7 2.4E-05 5.2E-10 62.1 21.8 187 90-283 277-466 (564)
103 KOG3081 Vesicle coat complex C 98.7 2.5E-05 5.5E-10 58.3 20.7 139 120-270 114-256 (299)
104 PRK14720 transcript cleavage f 98.7 9.9E-06 2.1E-10 71.8 21.8 136 2-143 34-178 (906)
105 TIGR00756 PPR pentatricopeptid 98.7 2.8E-08 6.2E-13 50.9 3.7 34 1-34 2-35 (35)
106 TIGR02552 LcrH_SycD type III s 98.7 3.3E-06 7.1E-11 58.5 14.9 96 150-248 18-113 (135)
107 KOG2047 mRNA splicing factor [ 98.6 0.0001 2.2E-09 61.9 24.5 109 187-295 389-517 (835)
108 PRK04841 transcriptional regul 98.6 7.1E-05 1.5E-09 69.0 26.9 268 8-285 461-761 (903)
109 KOG4162 Predicted calmodulin-b 98.6 0.00025 5.3E-09 60.7 26.8 251 15-283 460-782 (799)
110 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 4.6E-06 1E-10 67.5 15.8 123 117-246 172-294 (395)
111 COG4783 Putative Zn-dependent 98.6 0.00018 3.9E-09 58.4 25.4 119 124-246 316-434 (484)
112 COG4783 Putative Zn-dependent 98.6 6.4E-05 1.4E-09 60.9 21.8 154 81-259 309-463 (484)
113 TIGR02552 LcrH_SycD type III s 98.6 5.8E-06 1.3E-10 57.2 14.5 94 117-213 20-113 (135)
114 KOG4340 Uncharacterized conser 98.6 1.8E-05 4E-10 60.1 17.6 233 29-283 5-269 (459)
115 PF08579 RPM2: Mitochondrial r 98.6 1.9E-06 4.2E-11 55.3 10.4 85 5-91 31-116 (120)
116 KOG3785 Uncharacterized conser 98.6 0.00016 3.4E-09 56.5 22.8 126 5-143 63-214 (557)
117 KOG0624 dsRNA-activated protei 98.6 0.00015 3.3E-09 56.3 24.8 222 57-285 119-371 (504)
118 KOG1156 N-terminal acetyltrans 98.6 0.00029 6.2E-09 59.2 28.5 94 190-286 376-470 (700)
119 KOG1156 N-terminal acetyltrans 98.6 0.00013 2.9E-09 61.1 23.3 85 57-143 88-172 (700)
120 PF13812 PPR_3: Pentatricopept 98.6 9.4E-08 2E-12 48.5 3.4 32 1-32 3-34 (34)
121 TIGR00756 PPR pentatricopeptid 98.5 1.9E-07 4E-12 47.8 4.4 33 222-254 2-34 (35)
122 KOG3785 Uncharacterized conser 98.5 2.9E-05 6.4E-10 60.4 17.6 240 5-268 291-534 (557)
123 PRK14720 transcript cleavage f 98.5 2E-05 4.3E-10 69.9 18.8 194 73-287 24-255 (906)
124 KOG3081 Vesicle coat complex C 98.5 0.00011 2.4E-09 55.0 19.5 171 66-248 95-270 (299)
125 PF13812 PPR_3: Pentatricopept 98.5 2.9E-07 6.2E-12 46.7 4.2 33 221-253 2-34 (34)
126 PF09976 TPR_21: Tetratricopep 98.5 2.5E-05 5.5E-10 54.7 14.8 115 92-210 24-143 (145)
127 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.4E-05 3E-10 64.8 15.0 127 80-213 170-296 (395)
128 KOG2376 Signal recognition par 98.4 0.00027 5.9E-09 58.7 21.9 224 6-255 19-258 (652)
129 PF10037 MRP-S27: Mitochondria 98.4 7.8E-06 1.7E-10 66.6 13.2 122 147-268 64-186 (429)
130 PF10037 MRP-S27: Mitochondria 98.4 9.3E-06 2E-10 66.2 13.4 124 29-162 61-186 (429)
131 PF09976 TPR_21: Tetratricopep 98.4 2.7E-05 5.8E-10 54.6 14.2 115 162-280 24-143 (145)
132 KOG2053 Mitochondrial inherita 98.4 0.00096 2.1E-08 58.3 25.1 228 8-250 18-256 (932)
133 PF01535 PPR: PPR repeat; Int 98.4 4.8E-07 1E-11 44.7 3.0 30 1-30 2-31 (31)
134 KOG0548 Molecular co-chaperone 98.3 0.00067 1.5E-08 55.8 21.5 235 5-267 230-471 (539)
135 PRK04841 transcriptional regul 98.3 0.00046 1E-08 63.8 23.5 237 3-249 495-760 (903)
136 KOG4162 Predicted calmodulin-b 98.3 0.0016 3.4E-08 56.1 23.8 207 30-249 319-542 (799)
137 PF08579 RPM2: Mitochondrial r 98.3 2.1E-05 4.4E-10 50.7 9.9 77 191-267 31-116 (120)
138 KOG3616 Selective LIM binding 98.3 0.0001 2.2E-09 63.0 16.8 186 57-277 745-930 (1636)
139 KOG0548 Molecular co-chaperone 98.3 0.0013 2.9E-08 54.1 23.9 88 8-108 11-99 (539)
140 KOG0985 Vesicle coat protein c 98.3 0.00026 5.6E-09 62.6 19.2 133 7-171 1056-1188(1666)
141 KOG0985 Vesicle coat protein c 98.3 0.00082 1.8E-08 59.7 22.1 129 57-208 1061-1189(1666)
142 KOG2053 Mitochondrial inherita 98.3 0.002 4.4E-08 56.4 24.3 223 57-287 22-258 (932)
143 KOG3617 WD40 and TPR repeat-co 98.3 0.00013 2.9E-09 63.0 16.7 235 9-274 738-1012(1416)
144 PRK10866 outer membrane biogen 98.2 0.00084 1.8E-08 51.4 19.6 184 79-283 32-240 (243)
145 PF05843 Suf: Suppressor of fo 98.2 0.0001 2.2E-09 57.7 14.6 129 116-248 3-135 (280)
146 TIGR02795 tol_pal_ybgF tol-pal 98.2 0.00012 2.6E-09 49.2 13.2 97 82-178 5-105 (119)
147 cd00189 TPR Tetratricopeptide 98.2 5.9E-05 1.3E-09 48.1 11.3 87 157-246 8-94 (100)
148 PF05843 Suf: Suppressor of fo 98.2 4.2E-05 9E-10 59.9 12.0 131 150-284 2-136 (280)
149 PF06239 ECSIT: Evolutionarily 98.2 0.00011 2.4E-09 53.5 12.8 93 31-128 44-152 (228)
150 PF01535 PPR: PPR repeat; Int 98.2 3.5E-06 7.5E-11 41.6 3.6 29 222-250 2-30 (31)
151 TIGR02795 tol_pal_ybgF tol-pal 98.2 0.00018 3.9E-09 48.4 13.1 95 154-248 7-104 (119)
152 cd00189 TPR Tetratricopeptide 98.1 8.2E-05 1.8E-09 47.4 10.9 92 119-213 5-96 (100)
153 KOG1127 TPR repeat-containing 98.1 0.00043 9.3E-09 61.1 17.7 216 58-280 472-696 (1238)
154 PLN03088 SGT1, suppressor of 98.1 0.00014 3.1E-09 59.0 14.1 88 123-213 11-98 (356)
155 KOG3616 Selective LIM binding 98.1 0.00052 1.1E-08 58.9 17.0 138 121-281 739-876 (1636)
156 PF06239 ECSIT: Evolutionarily 98.1 8.7E-05 1.9E-09 54.0 10.7 93 2-95 50-154 (228)
157 PRK10153 DNA-binding transcrip 98.1 0.0013 2.8E-08 56.0 19.0 143 29-179 332-483 (517)
158 PF14938 SNAP: Soluble NSF att 98.1 0.00061 1.3E-08 53.6 16.0 199 82-282 38-264 (282)
159 PF12895 Apc3: Anaphase-promot 98.0 1.3E-05 2.7E-10 50.4 5.2 18 192-209 32-49 (84)
160 KOG3617 WD40 and TPR repeat-co 98.0 0.0013 2.8E-08 57.3 18.2 241 1-280 759-1047(1416)
161 PRK15363 pathogenicity island 98.0 0.00034 7.4E-09 48.6 12.2 88 122-212 43-130 (157)
162 KOG1914 mRNA cleavage and poly 98.0 0.0057 1.2E-07 50.8 22.1 209 60-271 309-526 (656)
163 PRK10153 DNA-binding transcrip 98.0 0.0011 2.4E-08 56.5 17.7 146 109-259 332-490 (517)
164 PRK02603 photosystem I assembl 98.0 0.00094 2E-08 48.3 15.1 63 81-143 37-101 (172)
165 KOG2376 Signal recognition par 98.0 0.0067 1.4E-07 50.9 23.4 266 5-282 230-518 (652)
166 PF12895 Apc3: Anaphase-promot 98.0 1.6E-05 3.5E-10 49.8 5.1 81 57-139 2-83 (84)
167 KOG1127 TPR repeat-containing 98.0 0.0044 9.4E-08 55.2 20.7 217 15-246 474-697 (1238)
168 PLN03088 SGT1, suppressor of 98.0 0.00046 9.9E-09 56.1 14.3 92 86-179 9-100 (356)
169 CHL00033 ycf3 photosystem I as 98.0 0.00033 7.2E-09 50.5 12.2 63 116-178 37-101 (168)
170 KOG1914 mRNA cleavage and poly 98.0 0.0072 1.6E-07 50.2 22.4 185 96-282 310-499 (656)
171 PRK15363 pathogenicity island 98.0 0.0015 3.2E-08 45.5 14.3 98 149-249 35-132 (157)
172 CHL00033 ycf3 photosystem I as 97.9 0.00059 1.3E-08 49.2 12.2 98 148-246 34-139 (168)
173 PRK02603 photosystem I assembl 97.9 0.0021 4.7E-08 46.4 15.0 86 116-203 37-124 (172)
174 PF13525 YfiO: Outer membrane 97.9 0.002 4.4E-08 47.9 15.0 176 84-275 10-198 (203)
175 PF14938 SNAP: Soluble NSF att 97.8 0.0045 9.7E-08 48.8 16.5 164 81-246 77-263 (282)
176 PF12688 TPR_5: Tetratrico pep 97.8 0.0036 7.8E-08 41.9 13.5 15 128-142 15-29 (120)
177 COG4700 Uncharacterized protei 97.8 0.0067 1.4E-07 43.3 18.0 159 85-247 62-220 (251)
178 KOG0553 TPR repeat-containing 97.8 0.00063 1.4E-08 52.0 10.7 102 123-229 90-191 (304)
179 PF12688 TPR_5: Tetratrico pep 97.7 0.0037 8E-08 41.8 13.2 106 154-266 6-117 (120)
180 KOG2796 Uncharacterized conser 97.7 0.012 2.5E-07 44.5 16.3 130 83-214 181-315 (366)
181 PRK10866 outer membrane biogen 97.7 0.011 2.3E-07 45.4 16.6 170 57-247 45-239 (243)
182 PF14559 TPR_19: Tetratricopep 97.7 0.00031 6.6E-09 41.9 6.6 51 197-248 3-53 (68)
183 KOG0624 dsRNA-activated protei 97.7 0.018 3.8E-07 45.4 26.0 223 57-287 51-301 (504)
184 COG4235 Cytochrome c biogenesi 97.7 0.011 2.3E-07 45.6 16.0 113 146-263 153-268 (287)
185 KOG0553 TPR repeat-containing 97.6 0.005 1.1E-07 47.3 13.9 103 87-194 89-191 (304)
186 PF14559 TPR_19: Tetratricopep 97.6 0.0003 6.6E-09 41.9 6.3 50 162-213 4-53 (68)
187 PF13432 TPR_16: Tetratricopep 97.6 0.0006 1.3E-08 40.2 7.4 56 192-248 4-59 (65)
188 PF03704 BTAD: Bacterial trans 97.6 0.0038 8.2E-08 43.8 12.2 72 187-259 64-140 (146)
189 PF13414 TPR_11: TPR repeat; P 97.6 0.00052 1.1E-08 41.0 6.8 64 78-142 2-66 (69)
190 KOG2796 Uncharacterized conser 97.6 0.015 3.3E-07 43.9 15.2 139 117-259 180-323 (366)
191 KOG1538 Uncharacterized conser 97.5 0.016 3.4E-07 49.5 16.5 248 6-287 563-849 (1081)
192 PF03704 BTAD: Bacterial trans 97.5 0.0011 2.3E-08 46.6 8.8 74 149-224 62-140 (146)
193 COG4235 Cytochrome c biogenesi 97.5 0.019 4.1E-07 44.4 15.5 114 111-229 153-269 (287)
194 PF04840 Vps16_C: Vps16, C-ter 97.5 0.034 7.3E-07 44.4 24.5 110 149-279 177-286 (319)
195 PF13432 TPR_16: Tetratricopep 97.5 0.00075 1.6E-08 39.8 6.5 54 158-213 6-59 (65)
196 PF13281 DUF4071: Domain of un 97.5 0.04 8.6E-07 44.6 20.8 168 79-249 141-334 (374)
197 PF12921 ATP13: Mitochondrial 97.5 0.0034 7.4E-08 42.4 10.1 52 215-266 47-99 (126)
198 PF13525 YfiO: Outer membrane 97.5 0.026 5.5E-07 42.1 17.1 23 156-178 148-170 (203)
199 PF13414 TPR_11: TPR repeat; P 97.4 0.0011 2.4E-08 39.6 6.9 61 186-247 4-65 (69)
200 COG4700 Uncharacterized protei 97.4 0.022 4.9E-07 40.7 17.5 135 75-212 85-220 (251)
201 PF12921 ATP13: Mitochondrial 97.4 0.0044 9.5E-08 41.9 10.2 82 78-159 1-98 (126)
202 PRK10803 tol-pal system protei 97.4 0.0083 1.8E-07 46.4 12.4 101 114-214 143-246 (263)
203 PRK10803 tol-pal system protei 97.3 0.012 2.5E-07 45.7 12.7 103 149-256 143-251 (263)
204 KOG1130 Predicted G-alpha GTPa 97.3 0.0074 1.6E-07 48.6 11.5 265 8-283 26-343 (639)
205 KOG2041 WD40 repeat protein [G 97.2 0.042 9.2E-07 47.5 15.7 157 57-246 747-904 (1189)
206 PF13371 TPR_9: Tetratricopept 97.2 0.0057 1.2E-07 36.9 8.0 54 194-248 4-57 (73)
207 PF13424 TPR_12: Tetratricopep 97.1 0.0027 5.8E-08 39.0 6.3 59 222-280 7-71 (78)
208 PRK15331 chaperone protein Sic 97.1 0.054 1.2E-06 38.1 13.7 86 125-213 48-133 (165)
209 PF13371 TPR_9: Tetratricopept 97.0 0.0069 1.5E-07 36.5 7.6 53 159-213 5-57 (73)
210 PF13424 TPR_12: Tetratricopep 97.0 0.0028 6E-08 38.9 5.7 63 80-142 6-74 (78)
211 PRK15331 chaperone protein Sic 97.0 0.071 1.5E-06 37.6 14.5 91 156-249 44-134 (165)
212 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.024 5.1E-07 46.7 11.6 66 182-249 72-141 (453)
213 KOG3941 Intermediate in Toll s 96.9 0.027 6E-07 43.1 10.5 106 31-141 64-186 (406)
214 PF10300 DUF3808: Protein of u 96.8 0.26 5.6E-06 42.0 17.3 160 120-283 194-375 (468)
215 PF13170 DUF4003: Protein of u 96.8 0.19 4.2E-06 39.7 17.7 138 15-158 78-226 (297)
216 PF09205 DUF1955: Domain of un 96.8 0.084 1.8E-06 35.5 12.5 65 150-216 87-151 (161)
217 KOG2041 WD40 repeat protein [G 96.7 0.34 7.4E-06 42.3 17.3 42 225-266 1026-1068(1189)
218 KOG1538 Uncharacterized conser 96.7 0.21 4.5E-06 43.1 15.6 219 3-249 602-846 (1081)
219 KOG0550 Molecular chaperone (D 96.7 0.25 5.4E-06 40.2 16.7 83 197-283 261-349 (486)
220 COG4105 ComL DNA uptake lipopr 96.7 0.19 4E-06 38.2 18.8 82 78-160 34-117 (254)
221 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.13 2.7E-06 42.6 13.3 66 77-143 73-141 (453)
222 KOG3941 Intermediate in Toll s 96.5 0.072 1.6E-06 40.9 10.8 32 238-269 141-172 (406)
223 PF08631 SPO22: Meiosis protei 96.5 0.3 6.5E-06 38.4 23.3 130 10-143 4-150 (278)
224 PF10300 DUF3808: Protein of u 96.5 0.47 1E-05 40.4 17.2 161 84-247 193-374 (468)
225 COG3118 Thioredoxin domain-con 96.4 0.32 6.9E-06 37.8 15.9 143 88-235 143-287 (304)
226 KOG0543 FKBP-type peptidyl-pro 96.4 0.22 4.8E-06 40.3 13.2 124 120-247 214-353 (397)
227 COG1729 Uncharacterized protei 96.3 0.13 2.9E-06 39.3 11.2 98 116-214 144-244 (262)
228 COG5107 RNA14 Pre-mRNA 3'-end 96.3 0.53 1.1E-05 38.9 16.3 147 35-197 398-547 (660)
229 PF13512 TPR_18: Tetratricopep 96.3 0.21 4.6E-06 34.3 11.5 79 86-164 17-97 (142)
230 PF04053 Coatomer_WDAD: Coatom 96.2 0.39 8.5E-06 40.4 14.6 155 90-280 272-427 (443)
231 PF07079 DUF1347: Protein of u 96.2 0.56 1.2E-05 38.8 26.5 126 165-294 396-534 (549)
232 COG4105 ComL DNA uptake lipopr 96.2 0.37 8.1E-06 36.7 17.8 156 57-214 47-233 (254)
233 COG3898 Uncharacterized membra 96.2 0.53 1.2E-05 38.2 25.9 251 12-284 97-392 (531)
234 PF09205 DUF1955: Domain of un 96.2 0.22 4.8E-06 33.6 13.6 65 186-251 87-151 (161)
235 KOG0543 FKBP-type peptidyl-pro 96.2 0.18 4E-06 40.8 11.7 126 86-214 215-355 (397)
236 smart00299 CLH Clathrin heavy 96.1 0.27 5.9E-06 34.0 14.5 41 120-161 13-53 (140)
237 smart00299 CLH Clathrin heavy 96.1 0.28 6.2E-06 33.9 14.5 125 83-231 11-136 (140)
238 PF13281 DUF4071: Domain of un 96.0 0.66 1.4E-05 37.8 20.3 169 34-214 141-334 (374)
239 COG3118 Thioredoxin domain-con 96.0 0.53 1.1E-05 36.6 17.3 146 120-269 140-286 (304)
240 COG1729 Uncharacterized protei 95.9 0.21 4.6E-06 38.3 10.6 98 81-179 144-245 (262)
241 KOG2610 Uncharacterized conser 95.8 0.54 1.2E-05 37.3 12.6 153 90-246 114-273 (491)
242 KOG2280 Vacuolar assembly/sort 95.8 1.2 2.6E-05 39.3 19.2 116 144-279 679-794 (829)
243 PF04053 Coatomer_WDAD: Coatom 95.7 0.17 3.7E-06 42.5 10.5 159 7-211 269-428 (443)
244 COG3629 DnrI DNA-binding trans 95.7 0.23 5.1E-06 38.6 10.4 77 187-264 155-236 (280)
245 COG5107 RNA14 Pre-mRNA 3'-end 95.6 1.1 2.3E-05 37.3 20.0 147 113-266 396-546 (660)
246 KOG4555 TPR repeat-containing 95.6 0.3 6.5E-06 32.9 9.1 91 158-250 52-145 (175)
247 PF04840 Vps16_C: Vps16, C-ter 95.6 0.91 2E-05 36.5 21.6 87 186-282 178-264 (319)
248 PF13428 TPR_14: Tetratricopep 95.5 0.066 1.4E-06 28.5 5.0 23 120-142 7-29 (44)
249 COG3898 Uncharacterized membra 95.5 1.1 2.3E-05 36.5 22.4 220 10-250 131-393 (531)
250 KOG2114 Vacuolar assembly/sort 95.5 1.4 3.1E-05 39.4 15.1 142 86-246 375-516 (933)
251 PRK11906 transcriptional regul 95.5 1.3 2.7E-05 37.1 17.9 156 15-176 274-434 (458)
252 KOG1130 Predicted G-alpha GTPa 95.4 0.1 2.2E-06 42.4 7.6 223 57-280 30-300 (639)
253 PF13428 TPR_14: Tetratricopep 95.4 0.061 1.3E-06 28.6 4.5 41 80-121 2-42 (44)
254 PF13170 DUF4003: Protein of u 95.3 1.1 2.4E-05 35.6 21.2 151 96-248 79-249 (297)
255 KOG4555 TPR repeat-containing 95.3 0.55 1.2E-05 31.7 11.3 90 124-215 53-145 (175)
256 KOG1585 Protein required for f 95.3 0.93 2E-05 34.4 16.1 117 161-278 122-250 (308)
257 COG3629 DnrI DNA-binding trans 95.3 0.39 8.5E-06 37.4 10.2 79 149-229 153-236 (280)
258 COG4649 Uncharacterized protei 95.2 0.73 1.6E-05 32.9 13.3 139 113-253 58-200 (221)
259 PF07035 Mic1: Colon cancer-as 95.0 0.89 1.9E-05 32.5 15.2 16 228-243 97-112 (167)
260 PF04184 ST7: ST7 protein; In 94.9 2 4.2E-05 36.3 15.5 76 117-192 262-338 (539)
261 COG0457 NrfG FOG: TPR repeat [ 94.9 1.1 2.4E-05 33.4 24.9 199 79-281 59-262 (291)
262 KOG1920 IkappaB kinase complex 94.9 3.3 7.2E-05 38.8 17.8 80 156-248 946-1027(1265)
263 PF10602 RPN7: 26S proteasome 94.8 0.91 2E-05 33.0 10.6 61 187-247 38-100 (177)
264 KOG1920 IkappaB kinase complex 94.8 3.2 7E-05 38.9 15.7 118 111-247 932-1053(1265)
265 COG4649 Uncharacterized protei 94.7 1.1 2.3E-05 32.1 13.0 123 57-179 71-197 (221)
266 KOG2610 Uncharacterized conser 94.7 1.8 3.9E-05 34.6 14.0 153 11-175 115-273 (491)
267 KOG1550 Extracellular protein 94.7 2.8 6.1E-05 36.7 17.1 183 59-250 227-427 (552)
268 PF13176 TPR_7: Tetratricopept 94.6 0.12 2.7E-06 26.0 4.2 26 222-247 1-26 (36)
269 PF10602 RPN7: 26S proteasome 94.6 1.2 2.7E-05 32.3 12.7 63 80-142 37-101 (177)
270 KOG4570 Uncharacterized conser 94.5 0.49 1.1E-05 37.1 8.8 105 73-179 58-165 (418)
271 cd00923 Cyt_c_Oxidase_Va Cytoc 94.4 0.48 1E-05 30.0 7.0 60 61-121 24-83 (103)
272 PF09613 HrpB1_HrpK: Bacterial 94.4 1.2 2.7E-05 31.4 11.3 119 150-276 8-130 (160)
273 KOG1550 Extracellular protein 94.3 3.4 7.4E-05 36.3 16.4 183 95-288 228-430 (552)
274 PF13176 TPR_7: Tetratricopept 94.3 0.13 2.8E-06 25.9 3.8 24 117-140 2-25 (36)
275 PF07035 Mic1: Colon cancer-as 94.3 1.4 3E-05 31.5 15.2 136 98-250 13-150 (167)
276 PF00637 Clathrin: Region in C 94.1 0.041 9E-07 38.3 2.4 83 85-174 13-95 (143)
277 KOG2114 Vacuolar assembly/sort 94.0 2.7 5.8E-05 37.8 13.2 180 81-282 336-517 (933)
278 PF00515 TPR_1: Tetratricopept 93.9 0.26 5.6E-06 24.2 4.5 27 222-248 3-29 (34)
279 COG0457 NrfG FOG: TPR repeat [ 93.9 2 4.4E-05 32.0 28.5 201 34-249 59-265 (291)
280 KOG4570 Uncharacterized conser 93.8 1.9 4.2E-05 34.0 10.7 47 201-247 116-162 (418)
281 KOG0550 Molecular chaperone (D 93.7 3.3 7.2E-05 34.1 18.2 153 57-214 182-350 (486)
282 PF13512 TPR_18: Tetratricopep 93.7 1.6 3.4E-05 30.2 12.6 54 160-213 21-75 (142)
283 COG1747 Uncharacterized N-term 93.6 4 8.7E-05 34.7 22.7 96 78-178 65-160 (711)
284 PRK11906 transcriptional regul 93.6 3.8 8.3E-05 34.4 18.0 137 35-178 252-401 (458)
285 PF11207 DUF2989: Protein of u 93.6 1.1 2.3E-05 33.0 8.6 79 89-169 117-198 (203)
286 PF06552 TOM20_plant: Plant sp 93.2 2.3 5.1E-05 30.6 9.6 120 15-145 7-138 (186)
287 PF13431 TPR_17: Tetratricopep 93.1 0.16 3.5E-06 25.2 2.9 22 183-204 11-32 (34)
288 PF07719 TPR_2: Tetratricopept 93.0 0.42 9.2E-06 23.3 4.5 27 222-248 3-29 (34)
289 PF02284 COX5A: Cytochrome c o 93.0 1.6 3.4E-05 28.1 7.6 59 203-262 28-86 (108)
290 PF08631 SPO22: Meiosis protei 92.9 3.9 8.4E-05 32.3 25.5 220 57-280 6-271 (278)
291 PF09613 HrpB1_HrpK: Bacterial 92.8 2.5 5.3E-05 29.9 12.7 114 120-241 16-130 (160)
292 KOG1585 Protein required for f 92.6 3.7 8E-05 31.3 18.0 57 187-244 192-251 (308)
293 PF13374 TPR_10: Tetratricopep 92.3 0.53 1.1E-05 24.2 4.5 28 221-248 3-30 (42)
294 KOG1941 Acetylcholine receptor 92.2 5.4 0.00012 32.4 14.3 227 11-247 18-273 (518)
295 PRK15180 Vi polysaccharide bio 92.0 4 8.6E-05 34.4 10.8 124 160-288 300-424 (831)
296 PF13431 TPR_17: Tetratricopep 92.0 0.25 5.4E-06 24.5 2.7 20 114-133 13-32 (34)
297 PF02284 COX5A: Cytochrome c o 91.8 2.3 5E-05 27.4 8.9 59 62-121 28-86 (108)
298 PF13374 TPR_10: Tetratricopep 91.4 0.63 1.4E-05 23.9 4.2 28 115-142 3-30 (42)
299 PF10345 Cohesin_load: Cohesin 91.2 11 0.00023 33.8 17.7 195 78-282 29-252 (608)
300 KOG1464 COP9 signalosome, subu 91.1 6 0.00013 30.7 14.7 153 59-212 42-218 (440)
301 PF07079 DUF1347: Protein of u 91.1 8.4 0.00018 32.4 25.2 259 9-284 16-327 (549)
302 PF00637 Clathrin: Region in C 91.1 0.082 1.8E-06 36.8 0.5 121 154-282 12-136 (143)
303 cd00923 Cyt_c_Oxidase_Va Cytoc 91.0 2.8 6.1E-05 26.7 9.0 32 144-175 37-68 (103)
304 TIGR02561 HrpB1_HrpK type III 91.0 4 8.7E-05 28.5 10.3 52 160-214 21-73 (153)
305 COG1747 Uncharacterized N-term 90.9 9.5 0.00021 32.6 21.6 181 31-229 63-248 (711)
306 KOG1258 mRNA processing protei 90.8 10 0.00022 32.9 18.1 185 33-234 296-489 (577)
307 PF00515 TPR_1: Tetratricopept 90.5 0.91 2E-05 22.2 4.0 27 116-142 3-29 (34)
308 PF13929 mRNA_stabil: mRNA sta 89.6 8.6 0.00019 30.2 17.0 136 95-230 144-288 (292)
309 PF02259 FAT: FAT domain; Int 89.6 10 0.00022 31.0 17.4 66 218-283 144-212 (352)
310 COG4785 NlpI Lipoprotein NlpI, 89.5 7.4 0.00016 29.2 18.4 180 57-250 78-267 (297)
311 PRK15180 Vi polysaccharide bio 89.2 13 0.00028 31.6 12.9 87 57-145 336-422 (831)
312 PF13174 TPR_6: Tetratricopept 89.2 1 2.2E-05 21.7 3.6 23 226-248 6-28 (33)
313 COG4455 ImpE Protein of avirul 89.1 5.2 0.00011 30.0 8.2 77 151-229 3-81 (273)
314 PF13181 TPR_8: Tetratricopept 88.8 1.7 3.7E-05 21.1 4.5 27 222-248 3-29 (34)
315 PF07719 TPR_2: Tetratricopept 88.8 1.6 3.4E-05 21.1 4.2 27 116-142 3-29 (34)
316 COG4455 ImpE Protein of avirul 88.7 4.9 0.00011 30.1 7.9 78 116-194 3-81 (273)
317 KOG1941 Acetylcholine receptor 88.6 12 0.00026 30.5 11.6 119 57-176 135-273 (518)
318 PF07163 Pex26: Pex26 protein; 88.6 10 0.00022 29.7 9.8 81 57-137 96-181 (309)
319 TIGR02561 HrpB1_HrpK type III 88.3 6.8 0.00015 27.4 11.0 52 124-179 20-74 (153)
320 TIGR03504 FimV_Cterm FimV C-te 88.2 1.5 3.2E-05 23.4 3.8 27 4-30 4-30 (44)
321 PF06552 TOM20_plant: Plant sp 88.1 8.1 0.00018 28.0 9.4 98 5-110 34-138 (186)
322 PF13929 mRNA_stabil: mRNA sta 87.8 12 0.00025 29.5 21.0 63 182-244 199-262 (292)
323 PF07163 Pex26: Pex26 protein; 87.8 11 0.00025 29.4 10.0 90 118-208 87-181 (309)
324 PF13181 TPR_8: Tetratricopept 87.4 2.1 4.5E-05 20.8 4.1 27 116-142 3-29 (34)
325 KOG0276 Vesicle coat complex C 87.4 11 0.00024 32.9 10.2 152 10-212 597-748 (794)
326 TIGR03504 FimV_Cterm FimV C-te 87.2 2.3 4.9E-05 22.6 4.1 21 227-247 6-26 (44)
327 KOG4077 Cytochrome c oxidase, 86.9 6.5 0.00014 26.5 6.9 43 65-107 70-112 (149)
328 COG5108 RPO41 Mitochondrial DN 86.8 7.8 0.00017 34.2 9.1 81 4-91 33-115 (1117)
329 PF10579 Rapsyn_N: Rapsyn N-te 86.3 4.4 9.6E-05 24.7 5.5 46 232-277 18-65 (80)
330 PF07721 TPR_4: Tetratricopept 86.2 1.4 3.1E-05 20.1 2.8 18 261-278 7-24 (26)
331 PF04097 Nic96: Nup93/Nic96; 85.3 27 0.00059 31.3 13.8 43 4-47 116-158 (613)
332 KOG1258 mRNA processing protei 85.3 25 0.00054 30.7 24.6 86 57-143 92-180 (577)
333 PF11848 DUF3368: Domain of un 84.9 4.5 9.8E-05 21.9 5.0 32 231-262 13-44 (48)
334 PF04097 Nic96: Nup93/Nic96; 84.9 19 0.0004 32.3 11.0 34 7-42 266-299 (613)
335 KOG4077 Cytochrome c oxidase, 84.6 10 0.00022 25.7 7.3 45 204-248 68-112 (149)
336 PRK09687 putative lyase; Provi 84.3 19 0.00041 28.5 26.4 218 32-283 35-262 (280)
337 PF11207 DUF2989: Protein of u 84.2 15 0.00032 27.3 14.1 80 124-205 117-198 (203)
338 PF02259 FAT: FAT domain; Int 84.0 22 0.00047 29.0 20.3 67 147-213 144-212 (352)
339 COG2909 MalT ATP-dependent tra 83.6 37 0.00079 31.4 21.9 221 57-280 428-684 (894)
340 PF10579 Rapsyn_N: Rapsyn N-te 83.4 6.7 0.00014 24.0 5.3 47 197-243 18-66 (80)
341 PF04184 ST7: ST7 protein; In 83.3 28 0.00062 29.8 18.3 75 153-227 263-338 (539)
342 KOG4648 Uncharacterized conser 82.9 14 0.0003 29.9 8.3 50 159-210 107-156 (536)
343 KOG2280 Vacuolar assembly/sort 82.7 37 0.0008 30.7 19.7 77 195-281 694-770 (829)
344 KOG4648 Uncharacterized conser 82.1 19 0.00041 29.2 8.8 88 8-108 106-194 (536)
345 KOG0276 Vesicle coat complex C 82.1 28 0.0006 30.7 10.2 133 80-246 615-747 (794)
346 PF10345 Cohesin_load: Cohesin 81.5 40 0.00086 30.3 20.1 185 62-247 39-252 (608)
347 PF11846 DUF3366: Domain of un 81.0 7.4 0.00016 28.7 6.2 55 197-253 120-175 (193)
348 PRK10564 maltose regulon perip 80.7 4.4 9.6E-05 31.9 5.0 44 218-261 254-298 (303)
349 PHA02875 ankyrin repeat protei 80.7 26 0.00056 29.5 10.1 68 67-138 18-89 (413)
350 PF11848 DUF3368: Domain of un 80.1 7.5 0.00016 21.1 4.9 37 6-42 9-45 (48)
351 COG4785 NlpI Lipoprotein NlpI, 79.5 25 0.00053 26.6 16.0 181 93-286 79-268 (297)
352 PF11846 DUF3366: Domain of un 78.9 13 0.00029 27.3 7.0 33 182-214 141-173 (193)
353 COG0735 Fur Fe2+/Zn2+ uptake r 78.7 19 0.0004 25.2 7.2 24 121-144 27-50 (145)
354 PF08424 NRDE-2: NRDE-2, neces 78.4 34 0.00074 27.7 17.5 138 111-251 16-185 (321)
355 PHA02875 ankyrin repeat protei 78.3 40 0.00086 28.4 11.6 211 5-255 5-230 (413)
356 smart00028 TPR Tetratricopepti 77.9 5.3 0.00012 18.1 3.7 25 223-247 4-28 (34)
357 KOG4507 Uncharacterized conser 77.7 22 0.00048 31.1 8.4 128 63-194 592-719 (886)
358 PF13762 MNE1: Mitochondrial s 77.2 22 0.00048 24.8 10.6 23 83-105 43-65 (145)
359 PF14689 SPOB_a: Sensor_kinase 77.1 7.5 0.00016 22.5 4.1 25 223-247 26-50 (62)
360 PF11663 Toxin_YhaV: Toxin wit 76.7 4.5 9.7E-05 27.6 3.4 28 128-157 109-136 (140)
361 PF08424 NRDE-2: NRDE-2, neces 76.6 39 0.00085 27.4 18.7 153 31-185 16-190 (321)
362 KOG4642 Chaperone-dependent E3 75.8 34 0.00074 26.3 10.5 50 125-176 21-71 (284)
363 COG0735 Fur Fe2+/Zn2+ uptake r 75.8 24 0.00053 24.6 7.9 64 65-129 7-70 (145)
364 PF14689 SPOB_a: Sensor_kinase 75.8 9.8 0.00021 22.0 4.4 46 236-283 6-51 (62)
365 PF11663 Toxin_YhaV: Toxin wit 75.6 4 8.8E-05 27.8 3.0 23 168-193 114-136 (140)
366 COG3947 Response regulator con 75.0 40 0.00087 26.8 16.0 41 96-138 150-190 (361)
367 PF11817 Foie-gras_1: Foie gra 75.0 26 0.00056 27.1 7.8 58 118-175 182-244 (247)
368 PF09454 Vps23_core: Vps23 cor 74.0 15 0.00033 21.5 6.5 51 30-91 4-54 (65)
369 PRK10564 maltose regulon perip 73.9 7.7 0.00017 30.7 4.6 41 77-117 254-295 (303)
370 PF09670 Cas_Cas02710: CRISPR- 73.6 52 0.0011 27.5 9.9 58 7-73 139-198 (379)
371 COG5159 RPN6 26S proteasome re 72.2 47 0.001 26.3 11.2 52 85-136 9-67 (421)
372 COG3947 Response regulator con 70.9 52 0.0011 26.2 16.2 73 186-259 280-357 (361)
373 KOG1464 COP9 signalosome, subu 70.7 50 0.0011 26.0 17.5 157 57-213 78-260 (440)
374 KOG2471 TPR repeat-containing 69.7 73 0.0016 27.5 16.6 110 157-268 248-382 (696)
375 COG2909 MalT ATP-dependent tra 69.7 97 0.0021 28.9 18.7 228 9-245 425-684 (894)
376 PF11817 Foie-gras_1: Foie gra 69.6 41 0.00088 26.1 7.8 60 188-247 181-245 (247)
377 KOG4234 TPR repeat-containing 68.7 47 0.001 24.9 9.8 88 159-249 105-197 (271)
378 PF09477 Type_III_YscG: Bacter 68.1 31 0.00068 22.6 8.6 74 165-246 22-95 (116)
379 KOG0890 Protein kinase of the 67.9 1E+02 0.0022 32.3 11.3 152 119-279 1388-1542(2382)
380 KOG2063 Vacuolar assembly/sort 67.7 1.1E+02 0.0024 28.8 13.6 37 124-160 601-637 (877)
381 COG0790 FOG: TPR repeat, SEL1 67.7 60 0.0013 25.7 21.0 150 57-216 54-222 (292)
382 PF07575 Nucleopor_Nup85: Nup8 67.7 30 0.00065 30.7 7.5 62 78-141 404-465 (566)
383 PF12862 Apc5: Anaphase-promot 67.5 29 0.00063 22.0 6.8 16 160-175 52-67 (94)
384 PF13934 ELYS: Nuclear pore co 67.3 54 0.0012 25.0 16.1 106 117-234 79-186 (226)
385 PF13934 ELYS: Nuclear pore co 67.2 54 0.0012 25.0 10.3 102 83-196 80-183 (226)
386 PF14669 Asp_Glu_race_2: Putat 67.1 49 0.0011 24.5 14.5 55 190-244 137-205 (233)
387 PF11838 ERAP1_C: ERAP1-like C 66.3 68 0.0015 25.8 19.1 57 189-248 173-229 (324)
388 PF07575 Nucleopor_Nup85: Nup8 65.1 23 0.0005 31.4 6.3 18 5-22 154-171 (566)
389 cd00280 TRFH Telomeric Repeat 64.9 53 0.0011 24.1 7.8 22 192-213 118-139 (200)
390 PRK11639 zinc uptake transcrip 64.7 51 0.0011 23.8 7.0 47 190-236 30-76 (169)
391 PF09797 NatB_MDM20: N-acetylt 64.7 81 0.0018 26.1 20.4 66 153-220 184-252 (365)
392 KOG0687 26S proteasome regulat 64.6 76 0.0016 25.8 13.4 19 94-112 37-55 (393)
393 PF00244 14-3-3: 14-3-3 protei 64.2 64 0.0014 24.8 12.1 60 5-73 7-66 (236)
394 TIGR02508 type_III_yscG type I 63.8 38 0.00081 22.0 8.8 77 166-250 22-98 (115)
395 PF13762 MNE1: Mitochondrial s 63.6 48 0.0011 23.2 12.5 99 104-203 27-133 (145)
396 PF14853 Fis1_TPR_C: Fis1 C-te 63.6 24 0.00052 19.7 5.0 30 226-257 7-36 (53)
397 PRK11639 zinc uptake transcrip 63.4 54 0.0012 23.7 7.4 13 132-144 43-55 (169)
398 COG5108 RPO41 Mitochondrial DN 63.1 91 0.002 28.2 9.0 91 84-177 33-131 (1117)
399 PF09454 Vps23_core: Vps23 cor 63.1 28 0.00062 20.4 5.7 52 217-269 5-56 (65)
400 PRK09687 putative lyase; Provi 62.7 76 0.0017 25.2 23.9 183 62-266 90-278 (280)
401 PRK09857 putative transposase; 62.6 79 0.0017 25.3 9.9 69 223-292 209-277 (292)
402 PRK09462 fur ferric uptake reg 62.5 51 0.0011 23.1 7.2 35 129-163 32-66 (148)
403 KOG4567 GTPase-activating prot 62.0 82 0.0018 25.3 8.0 43 170-213 264-306 (370)
404 PF07678 A2M_comp: A-macroglob 62.0 66 0.0014 24.9 7.7 49 57-107 112-160 (246)
405 KOG4567 GTPase-activating prot 61.9 78 0.0017 25.5 7.7 71 99-174 263-343 (370)
406 cd08819 CARD_MDA5_2 Caspase ac 61.6 38 0.00082 21.3 7.0 13 163-175 50-62 (88)
407 KOG0687 26S proteasome regulat 61.4 88 0.0019 25.4 10.1 133 146-282 67-208 (393)
408 PF01475 FUR: Ferric uptake re 61.2 38 0.00082 22.6 5.6 47 4-50 12-58 (120)
409 KOG4234 TPR repeat-containing 60.8 69 0.0015 24.0 12.6 91 122-214 103-197 (271)
410 TIGR02508 type_III_yscG type I 60.5 44 0.00096 21.7 7.7 16 89-104 49-64 (115)
411 PF11838 ERAP1_C: ERAP1-like C 60.5 88 0.0019 25.2 20.3 146 130-281 146-305 (324)
412 PRK11619 lytic murein transgly 60.4 1.3E+02 0.0029 27.3 19.7 116 127-246 254-372 (644)
413 cd07153 Fur_like Ferric uptake 60.4 40 0.00087 22.2 5.6 48 4-51 5-52 (116)
414 PF07678 A2M_comp: A-macroglob 59.4 65 0.0014 24.9 7.3 81 166-249 116-221 (246)
415 COG5187 RPN7 26S proteasome re 58.3 94 0.002 24.8 13.6 115 77-194 113-236 (412)
416 cd08819 CARD_MDA5_2 Caspase ac 58.2 44 0.00096 21.0 7.1 64 169-239 22-85 (88)
417 KOG3364 Membrane protein invol 57.9 61 0.0013 22.5 10.1 52 57-108 48-100 (149)
418 PF12862 Apc5: Anaphase-promot 56.9 48 0.001 21.0 7.2 53 196-248 9-69 (94)
419 smart00386 HAT HAT (Half-A-TPR 56.8 20 0.00043 16.6 3.8 12 201-212 3-14 (33)
420 KOG3807 Predicted membrane pro 56.8 1.1E+02 0.0023 25.0 13.0 109 57-180 229-342 (556)
421 KOG2396 HAT (Half-A-TPR) repea 56.8 1.3E+02 0.0029 26.1 22.7 246 18-282 301-557 (568)
422 PRK12798 chemotaxis protein; R 56.8 1.2E+02 0.0026 25.6 20.1 193 92-288 125-328 (421)
423 KOG2066 Vacuolar assembly/sort 56.7 1.6E+02 0.0036 27.1 18.3 134 6-142 363-533 (846)
424 COG2178 Predicted RNA-binding 56.7 79 0.0017 23.4 8.8 60 6-73 36-98 (204)
425 PF04910 Tcf25: Transcriptiona 55.9 1.2E+02 0.0026 25.2 15.2 28 148-175 39-66 (360)
426 smart00638 LPD_N Lipoprotein N 55.5 1.5E+02 0.0033 26.4 24.2 199 32-247 308-523 (574)
427 COG0790 FOG: TPR repeat, SEL1 55.1 1E+02 0.0023 24.3 23.3 154 11-179 53-221 (292)
428 PRK09857 putative transposase; 54.7 1.1E+02 0.0024 24.5 10.0 68 186-254 207-274 (292)
429 COG2976 Uncharacterized protei 54.1 90 0.0019 23.3 15.1 89 156-250 96-189 (207)
430 KOG3677 RNA polymerase I-assoc 53.9 1.1E+02 0.0024 25.8 7.7 15 57-71 285-299 (525)
431 COG5159 RPN6 26S proteasome re 53.8 1.1E+02 0.0025 24.4 12.1 119 57-175 16-151 (421)
432 cd07153 Fur_like Ferric uptake 53.3 60 0.0013 21.4 5.5 40 89-128 10-49 (116)
433 PF03745 DUF309: Domain of unk 52.9 44 0.00095 19.3 5.3 18 160-177 10-27 (62)
434 KOG2297 Predicted translation 52.4 1.2E+02 0.0027 24.4 15.1 194 19-242 150-343 (412)
435 PF01475 FUR: Ferric uptake re 52.4 56 0.0012 21.8 5.3 45 84-128 12-56 (120)
436 PF09670 Cas_Cas02710: CRISPR- 52.1 1.4E+02 0.0031 25.0 10.8 54 124-178 141-198 (379)
437 PF08311 Mad3_BUB1_I: Mad3/BUB 51.8 74 0.0016 21.6 10.4 44 167-210 81-124 (126)
438 PRK08691 DNA polymerase III su 51.2 2E+02 0.0044 26.5 9.7 92 202-296 182-286 (709)
439 KOG4642 Chaperone-dependent E3 51.0 1.2E+02 0.0025 23.6 11.4 115 12-140 23-143 (284)
440 KOG1308 Hsp70-interacting prot 50.4 15 0.00033 29.7 2.4 89 127-218 127-215 (377)
441 KOG4507 Uncharacterized conser 49.2 1.5E+02 0.0032 26.5 8.0 86 127-214 620-705 (886)
442 PF09090 MIF4G_like_2: MIF4G l 49.2 1.3E+02 0.0027 23.5 9.0 106 147-253 9-125 (253)
443 PF04090 RNA_pol_I_TF: RNA pol 49.1 1.1E+02 0.0024 22.8 9.8 31 149-179 41-71 (199)
444 PF09986 DUF2225: Uncharacteri 48.9 1.2E+02 0.0025 23.0 10.8 22 87-108 173-194 (214)
445 KOG0890 Protein kinase of the 48.7 3.7E+02 0.008 28.8 20.4 64 220-286 1670-1733(2382)
446 PF10366 Vps39_1: Vacuolar sor 48.1 78 0.0017 20.8 8.1 27 116-142 41-67 (108)
447 PRK14951 DNA polymerase III su 48.1 2.1E+02 0.0046 25.9 9.5 85 166-254 186-284 (618)
448 KOG0376 Serine-threonine phosp 48.1 85 0.0018 26.9 6.4 105 86-196 11-116 (476)
449 KOG4521 Nuclear pore complex, 47.6 2.9E+02 0.0062 27.2 13.5 155 88-245 929-1127(1480)
450 KOG2066 Vacuolar assembly/sort 47.5 2.4E+02 0.0051 26.2 12.3 144 57-213 369-533 (846)
451 PF10255 Paf67: RNA polymerase 47.5 1.7E+02 0.0037 24.8 8.1 131 152-289 125-275 (404)
452 smart00638 LPD_N Lipoprotein N 47.4 2.1E+02 0.0045 25.6 21.6 196 77-279 308-520 (574)
453 COG2976 Uncharacterized protei 47.0 1.2E+02 0.0026 22.7 16.8 132 79-215 54-189 (207)
454 COG5187 RPN7 26S proteasome re 46.9 1.5E+02 0.0032 23.8 12.3 119 147-270 113-242 (412)
455 PF08311 Mad3_BUB1_I: Mad3/BUB 46.7 90 0.002 21.2 9.7 44 96-139 80-124 (126)
456 PF11768 DUF3312: Protein of u 46.7 2.1E+02 0.0045 25.3 10.6 60 83-142 412-472 (545)
457 KOG0376 Serine-threonine phosp 46.5 86 0.0019 26.8 6.2 104 121-230 11-115 (476)
458 PF10255 Paf67: RNA polymerase 46.2 1.8E+02 0.004 24.6 13.2 61 81-141 124-191 (404)
459 TIGR03581 EF_0839 conserved hy 46.2 69 0.0015 24.2 5.0 82 130-211 137-234 (236)
460 KOG1308 Hsp70-interacting prot 45.8 18 0.00039 29.3 2.2 95 160-258 125-220 (377)
461 PF04190 DUF410: Protein of un 45.7 1.5E+02 0.0032 23.3 19.0 127 67-213 37-169 (260)
462 PF10366 Vps39_1: Vacuolar sor 45.3 87 0.0019 20.6 7.7 27 151-177 41-67 (108)
463 PRK10941 hypothetical protein; 45.3 1.5E+02 0.0033 23.4 10.6 78 188-266 184-262 (269)
464 PF08314 Sec39: Secretory path 45.2 2.6E+02 0.0055 26.0 10.4 185 78-273 431-651 (715)
465 PRK13342 recombination factor 45.1 1.9E+02 0.0042 24.5 17.6 64 189-252 231-302 (413)
466 PRK09462 fur ferric uptake reg 42.9 1.1E+02 0.0025 21.3 8.0 61 69-130 7-68 (148)
467 KOG2063 Vacuolar assembly/sort 42.7 3.1E+02 0.0066 26.1 17.1 119 2-126 507-638 (877)
468 KOG2034 Vacuolar sorting prote 42.7 3E+02 0.0065 26.0 12.0 153 2-176 533-688 (911)
469 COG4003 Uncharacterized protei 42.5 44 0.00096 20.5 3.0 26 4-29 36-61 (98)
470 PF02184 HAT: HAT (Half-A-TPR) 41.8 46 0.00099 16.3 3.5 23 236-260 3-25 (32)
471 PRK07003 DNA polymerase III su 41.2 3.1E+02 0.0067 25.8 9.6 84 166-253 181-278 (830)
472 PF12796 Ank_2: Ankyrin repeat 41.0 84 0.0018 19.2 5.7 14 196-209 5-18 (89)
473 PF12926 MOZART2: Mitotic-spin 40.9 91 0.002 19.6 8.1 43 206-248 29-71 (88)
474 PF09868 DUF2095: Uncharacteri 40.8 1.1E+02 0.0023 20.4 5.4 40 4-44 66-105 (128)
475 PF06957 COPI_C: Coatomer (COP 40.4 2.3E+02 0.0051 24.1 9.0 30 116-145 302-331 (422)
476 PF14929 TAF1_subA: TAF RNA Po 39.9 2.7E+02 0.0059 24.8 14.1 133 128-266 323-466 (547)
477 PF12069 DUF3549: Protein of u 39.8 2.1E+02 0.0046 23.5 14.8 87 85-178 172-259 (340)
478 KOG1114 Tripeptidyl peptidase 39.8 3.5E+02 0.0076 26.0 15.8 198 16-246 1092-1292(1304)
479 KOG2471 TPR repeat-containing 39.6 1.4E+02 0.0029 26.0 6.3 107 88-197 249-381 (696)
480 KOG0686 COP9 signalosome, subu 38.9 2.4E+02 0.0053 23.9 15.6 162 80-249 151-333 (466)
481 COG4941 Predicted RNA polymera 38.4 2.3E+02 0.0049 23.4 9.6 131 15-152 272-403 (415)
482 PF01347 Vitellogenin_N: Lipop 38.0 3.1E+02 0.0066 24.8 19.7 198 36-248 348-568 (618)
483 KOG1839 Uncharacterized protei 37.8 3.5E+02 0.0077 26.8 9.3 149 11-169 944-1119(1236)
484 PF04762 IKI3: IKI3 family; I 37.7 3.9E+02 0.0084 25.9 11.1 194 84-281 699-927 (928)
485 COG4259 Uncharacterized protei 37.1 1.2E+02 0.0026 19.7 7.6 48 58-105 51-98 (121)
486 COG2405 Predicted nucleic acid 36.4 89 0.0019 21.7 4.0 33 231-263 120-152 (157)
487 KOG1839 Uncharacterized protei 36.0 4.5E+02 0.0098 26.1 11.1 135 111-245 970-1124(1236)
488 KOG0991 Replication factor C, 35.6 2.1E+02 0.0046 22.2 14.9 168 6-196 137-318 (333)
489 PRK10941 hypothetical protein; 35.5 2.2E+02 0.0049 22.5 10.8 77 153-231 185-262 (269)
490 PF15297 CKAP2_C: Cytoskeleton 35.4 2.6E+02 0.0055 23.1 9.8 62 166-230 120-185 (353)
491 COG2405 Predicted nucleic acid 35.2 1.2E+02 0.0026 21.1 4.5 35 124-158 119-153 (157)
492 PRK11905 bifunctional proline 35.2 3.5E+02 0.0077 27.0 9.2 157 96-266 50-212 (1208)
493 PF04190 DUF410: Protein of un 35.1 2.2E+02 0.0048 22.3 16.7 83 147-249 88-170 (260)
494 cd00280 TRFH Telomeric Repeat 34.8 1.9E+02 0.0041 21.4 12.3 20 158-177 120-139 (200)
495 COG2137 OraA Uncharacterized p 34.5 1.8E+02 0.004 21.2 13.5 107 134-245 55-163 (174)
496 PHA02537 M terminase endonucle 34.3 2.2E+02 0.0047 22.0 10.2 17 233-249 191-207 (230)
497 KOG1166 Mitotic checkpoint ser 34.2 2.3E+02 0.005 27.3 7.5 60 161-220 90-149 (974)
498 cd02679 MIT_spastin MIT: domai 34.2 70 0.0015 19.7 3.1 44 233-283 21-67 (79)
499 KOG0686 COP9 signalosome, subu 34.0 2.9E+02 0.0064 23.4 14.4 165 36-214 152-333 (466)
500 PF07443 HARP: HepA-related pr 33.8 15 0.00032 20.7 0.1 30 61-90 9-38 (55)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.8e-53 Score=371.75 Aligned_cols=288 Identities=21% Similarity=0.339 Sum_probs=173.7
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
||+||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++ .|++++|.++|++|.+.|+.||..+
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k----------~G~~eeAl~lf~~M~~~Gv~PD~vT 544 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR----------AGQVAKAFGAYGIMRSKNVKPDRVV 544 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----------CcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 566666666666666666666666666666666666666666666 5555566666666666666666666
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHh--cCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFMKE--KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (302)
|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|
T Consensus 545 YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay 624 (1060)
T PLN03218 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 66666666666666666666666644 3455566666666666666666666666666666666556666666666666
Q ss_pred HccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 022131 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239 (302)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 239 (302)
++.|++++|.++|++|.+.|. .||..+|+.++.+|++.|++++|.++++.|.+.|++||..+|+.+|.+|++.|++++|
T Consensus 625 ~k~G~~deAl~lf~eM~~~Gv-~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA 703 (1060)
T PLN03218 625 SQKGDWDFALSIYDDMKKKGV-KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703 (1060)
T ss_pred HhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 666666666666666665554 5566666666666666666666666666665555556666666666666666666666
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccCCCcccchhhhcccCC
Q 022131 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY 300 (302)
Q Consensus 240 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~ 300 (302)
.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..++..+|.++
T Consensus 704 ~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 6666665555555666666666666666666666666666665555555555555555443
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-52 Score=369.12 Aligned_cols=291 Identities=18% Similarity=0.271 Sum_probs=284.6
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 022131 1 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80 (302)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (302)
+||.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++ .|++++|.++|++|.+.|+.||..
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k----------~G~vd~A~~vf~eM~~~Gv~Pdvv 508 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAK----------SGKVDAMFEVFHEMVNAGVEANVH 508 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------CcCHHHHHHHHHHHHHcCCCCCHH
Confidence 5999999999999999999999999999999999999999999999 888999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH--CCCCCChhhHHHHHHH
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR--NGVCPSAETYNCFFKE 158 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~ 158 (302)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~a 588 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 5789999999999999
Q ss_pred HHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 022131 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238 (302)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 238 (302)
|++.|++++|.++|+.|.+.+. +|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi-~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNI-KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 9999999999999999999997 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccCCCcccchhhhcccCCCC
Q 022131 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR 302 (302)
Q Consensus 239 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 302 (302)
|.+++++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.++..+++.+|..|++
T Consensus 668 A~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988764
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-47 Score=333.84 Aligned_cols=283 Identities=18% Similarity=0.231 Sum_probs=221.7
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 022131 1 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80 (302)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (302)
+||++|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+++. .+..+.+.+++..+.+.|+.||..
T Consensus 191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~----------~~~~~~~~~l~~~~~~~g~~~d~~ 260 (697)
T PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG----------LGSARAGQQLHCCVLKTGVVGDTF 260 (697)
T ss_pred eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc----------CCcHHHHHHHHHHHHHhCCCccce
Confidence 5888888888888888888888888888888888888888888877 555566666666667777777777
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (302)
+++.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 777777778888888888888777743 4777788888888888888888888888877777788888888888888
Q ss_pred ccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 022131 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240 (302)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 240 (302)
+.|+.++|.+++..|.+.|. .||..+++.|+++|++.|++++|.++|++|.+ ||..+||.||.+|++.|+.++|.
T Consensus 337 ~~g~~~~a~~i~~~m~~~g~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~ 411 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAV 411 (697)
T ss_pred hccchHHHHHHHHHHHHhCC-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHH
Confidence 88888888888888877776 77777888888888888888888888877753 57778888888888888888888
Q ss_pred HHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccc-cCCCcccchhhhcccCCCC
Q 022131 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE-ESITFGSEFQNYHFKPYRR 302 (302)
Q Consensus 241 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~i~~~~~ 302 (302)
++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ .|+.|+...++.++..|+|
T Consensus 412 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 8888887778888888888888888888888888888888765 5777777777777766654
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-46 Score=333.91 Aligned_cols=287 Identities=18% Similarity=0.231 Sum_probs=228.1
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 022131 1 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80 (302)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (302)
+||++|.+|++.|++++|.++|++|...|+.||..||+.++.+|++ .++++.+.+++..|...|+.||..
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~----------~g~~~~a~~l~~~~~~~g~~~d~~ 324 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL----------LGDERLGREMHGYVVKTGFAVDVS 324 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----------cCChHHHHHHHHHHHHhCCccchH
Confidence 6999999999999999999999999999999999999999999999 666777777888887777777777
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (302)
+|+.|+.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~ 400 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHh
Confidence 777777777777777777777777642 4666777777777777777777777777777777777777777777777
Q ss_pred ccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------------------
Q 022131 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS-------------------------- 214 (302)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------------- 214 (302)
+.|+.+.+.+++..+.+.|. .|+..+++.|+++|++.|++++|.++|++|.+.
T Consensus 401 ~~g~~~~a~~l~~~~~~~g~-~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 401 CLGDLDVGVKLHELAERKGL-ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred ccchHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 77777777777777766665 566666666666666666666666555554332
Q ss_pred ----CC-----------------------------------------------------------------CCCHHHHHH
Q 022131 215 ----GL-----------------------------------------------------------------GPDLDSYTM 225 (302)
Q Consensus 215 ----~~-----------------------------------------------------------------~~~~~~~~~ 225 (302)
++ .||..+||.
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~ 559 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNI 559 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHH
Confidence 12 345667888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhcc-ccCCCcccchhhhcccCCCC
Q 022131 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD-EESITFGSEFQNYHFKPYRR 302 (302)
Q Consensus 226 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~~i~~~~~ 302 (302)
+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+...+..++..|+|
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r 637 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR 637 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 888999999999999999999999999999999999999999999999999999998 78999999999888877764
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-45 Score=329.05 Aligned_cols=283 Identities=16% Similarity=0.209 Sum_probs=245.0
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 022131 1 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80 (302)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (302)
+||++|.+|++.|++++|.++|++|...|+.||..||+.++.+|+. .+++..+.+++..|...|+.||..
T Consensus 154 ~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~----------~~~~~~~~~~~~~~~~~g~~~~~~ 223 (857)
T PLN03077 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG----------IPDLARGREVHAHVVRFGFELDVD 223 (857)
T ss_pred EHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCC----------ccchhhHHHHHHHHHHcCCCcccc
Confidence 5999999999999999999999999999999999999999999988 667778888888888888888888
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (302)
+++.|+.+|++.|+++.|.++|++|.+ ||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~ 299 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE 299 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Confidence 888888888888888888888888753 5778888888888888888888888888888888888888888888888
Q ss_pred ccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 022131 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240 (302)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 240 (302)
+.|+.+.+.+++..+.+.|. .||..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.
T Consensus 300 ~~g~~~~a~~l~~~~~~~g~-~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 300 LLGDERLGREMHGYVVKTGF-AVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred hcCChHHHHHHHHHHHHhCC-ccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHH
Confidence 88888888888888888887 7888888888888888888888888888875 367888888888888888888888
Q ss_pred HHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccCCCcccchhhhcccCCCC
Q 022131 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR 302 (302)
Q Consensus 241 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 302 (302)
++|++|.+.|+.||..||+.++.+|.+.|+++++.++++.+.+.|+.++..+.+.+|..|+|
T Consensus 375 ~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888777653
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-45 Score=320.68 Aligned_cols=292 Identities=16% Similarity=0.241 Sum_probs=232.9
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhh---------------------HHH
Q 022131 1 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF---------------------EKT 59 (302)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~---------------------~~~ 59 (302)
+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.++.+|++.|+++.+.++ .|+
T Consensus 125 t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~ 204 (697)
T PLN03081 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGN 204 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcC
Confidence 35666666666666666666666666666666666666666666663322221111 444
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 022131 60 IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGE 139 (302)
Q Consensus 60 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 139 (302)
+++|+++|++|.+.|+.|+..+|+.++.++.+.|+.+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|++
T Consensus 205 ~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555666666777778888999999999999999998
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 022131 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219 (302)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (302)
|.+ +|..+|+.++.+|++.|+.++|.++|++|.+.|. .||..||+.++.+|++.|++++|.+++..|.+.|+.||
T Consensus 285 m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d 359 (697)
T PLN03081 285 MPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV-SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359 (697)
T ss_pred CCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC
Confidence 864 6889999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccCCCcccchhhhcccC
Q 022131 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299 (302)
Q Consensus 220 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (302)
..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+.++|.++|++|.+.|+.|+..++..+|.+
T Consensus 360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 435 (697)
T PLN03081 360 IVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435 (697)
T ss_pred eeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999984 479999999999999999999999999999999999999999988877
Q ss_pred CC
Q 022131 300 YR 301 (302)
Q Consensus 300 ~~ 301 (302)
++
T Consensus 436 ~~ 437 (697)
T PLN03081 436 CR 437 (697)
T ss_pred Hh
Confidence 65
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=8.5e-22 Score=162.07 Aligned_cols=273 Identities=15% Similarity=0.109 Sum_probs=171.0
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCccc---HHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPN---VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPD 78 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 78 (302)
|..+...+...|++++|..+++.+...+..++ ...+..+...+.. .|++++|+.+|+++.+.. +++
T Consensus 72 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~----------~g~~~~A~~~~~~~l~~~-~~~ 140 (389)
T PRK11788 72 HLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK----------AGLLDRAEELFLQLVDEG-DFA 140 (389)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHcCC-cch
Confidence 34455566666666666666666655421111 1345555555555 566677777777776542 335
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 022131 79 VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPT----VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC 154 (302)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (302)
..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...++++.+... .+...+..
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~ 219 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASIL 219 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHH
Confidence 56667777777777777777777777766543221 11344555666677777777777777766432 23456666
Q ss_pred HHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 022131 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234 (302)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 234 (302)
+...+...|++++|.++++++.+.+. .....+++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|
T Consensus 220 la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g 296 (389)
T PRK11788 220 LGDLALAQGDYAAAIEALERVEEQDP-EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQE 296 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCh-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhC
Confidence 66777777777777777777766531 112345666777777777777777777777664 355555666777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhh---cchHHHHHHHHHhccccCCCcccc
Q 022131 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ---SDMLRTWRRLKKKLDEESITFGSE 291 (302)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 291 (302)
++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+.++.+++.
T Consensus 297 ~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 297 GPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 777777777777653 5677677766665553 446777777777777766666554
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=7.4e-21 Score=156.51 Aligned_cols=263 Identities=12% Similarity=0.045 Sum_probs=220.1
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCC---HHHHH
Q 022131 7 YGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPD---VTSFS 83 (302)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ 83 (302)
..+...|++++|...|.++.+.+ +.+..++..+...+.. .|++++|..+++.+...+..++ ...+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~----------~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRR----------RGEVDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH----------cCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 34567899999999999999873 3456688888888888 8899999999999987642222 35678
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHH
Q 022131 84 IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS----AETYNCFFKEY 159 (302)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~ 159 (302)
.+...|.+.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 89999999999999999999998864 44678899999999999999999999999988654332 22455677788
Q ss_pred HccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 022131 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239 (302)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 239 (302)
...|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|...|++++|
T Consensus 191 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 191 LARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 89999999999999998875 4567788889999999999999999999998763333356788999999999999999
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccC
Q 022131 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 240 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (302)
...++++.+. .|+...+..+...+.+.|++++|..+++++.+..
T Consensus 269 ~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 269 LEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred HHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999875 5777777889999999999999999999887763
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=3.4e-19 Score=161.67 Aligned_cols=266 Identities=9% Similarity=0.010 Sum_probs=186.4
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
|..+..++...|++++|...|+.+.+.. +.+...+..+..++.. .+++++|...|+++.+.. +.+..+
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~----------~~~~~~A~~~~~~~~~~~-~~~~~~ 671 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAV----------MKNYAKAITSLKRALELK-PDNTEA 671 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 6677888888899999999998887763 3456677778888887 777788888888877653 335677
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (302)
+..+...+...|++++|.++++.+.+.+ +.+...+..+...+.+.|++++|...|+++...+ |+..++..+..++..
T Consensus 672 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 672 QIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHH
Confidence 7777788888888888888888777765 3466667777777777788888888887777653 344566667777777
Q ss_pred cCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 022131 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241 (302)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 241 (302)
.|++++|.+.+..+.+.. +.+...+..+...|...|++++|...|+++.+.. +++...++.+...+...|+ .+|+.
T Consensus 749 ~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 777777777777777664 5666777777777777777777777777777653 3456666666666666666 55666
Q ss_pred HHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccCCC
Q 022131 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287 (302)
Q Consensus 242 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 287 (302)
.++++.+.. +-+..++..+..++...|++++|..+++++.+.+..
T Consensus 825 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 825 YAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 666665531 223344555556666666666666666666665543
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.87 E-value=6.1e-19 Score=160.01 Aligned_cols=263 Identities=12% Similarity=0.078 Sum_probs=191.7
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
+..+...+.+.|++++|.++++.+.+. .+.+...|..+..++.. .+++++|...|+++.+.. +.+...
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~----------~~~~~~A~~~~~~~~~~~-~~~~~~ 637 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLA----------AGDLNKAVSSFKKLLALQ-PDSALA 637 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhC-CCChHH
Confidence 445677777788888888888877654 34466677777777777 677777888888777653 335666
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (302)
+..+..++.+.|++++|...++++.+.. +.+..++..+...+...|++++|..+++.+.+... .+...+..+...+..
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 715 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLR 715 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHH
Confidence 7777777778888888888888777654 33566777777888888888888888888777643 466677777777778
Q ss_pred cCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 022131 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241 (302)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 241 (302)
.|++++|...+..+...+ |+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..+...|...|++++|..
T Consensus 716 ~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRA---PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred CCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 888888888888877763 44466677777777888888888888777765 34567777777777777888888888
Q ss_pred HHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhcccc
Q 022131 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 242 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (302)
.|+++.+.. +++..++..+...+...|+ ++|..++++..+.
T Consensus 792 ~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 792 HYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 888877653 4456677777777777777 6777777776654
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=2.2e-16 Score=136.85 Aligned_cols=190 Identities=10% Similarity=0.056 Sum_probs=95.7
Q ss_pred HHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchH-
Q 022131 89 YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG- 167 (302)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 167 (302)
+...|++++|...++.+.+....++......+...+.+.|++++|+..+++..+... .+...+..+...+...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhh
Confidence 344444444444444444332222222333334444555555555555555554422 234445555555555555553
Q ss_pred ---HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 022131 168 ---AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244 (302)
Q Consensus 168 ---a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 244 (302)
|...+++..+.. +.+...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...++
T Consensus 266 ~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~ 342 (656)
T PRK15174 266 KLQAAEHWRHALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFV 342 (656)
T ss_pred HHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555543 3445555555666666666666666666655542 2234445555556666666666666666
Q ss_pred HHHHCCCCCchhh-HHHHHHHHhhcchHHHHHHHHHhcccc
Q 022131 245 EMIEKGLLPQKVT-FETLYRGLIQSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 245 ~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (302)
++.+. .|+... +..+..++...|+.++|...+++..+.
T Consensus 343 ~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 343 QLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 65543 233322 222344555666666666666654443
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=4.1e-16 Score=135.13 Aligned_cols=263 Identities=8% Similarity=0.011 Sum_probs=198.1
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 022131 5 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84 (302)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (302)
+..+....|++++|+..++++.... +.+...+..+...+.. .|++++|...++++.... +.+...+..
T Consensus 82 l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~----------~g~~~~Ai~~l~~Al~l~-P~~~~a~~~ 149 (656)
T PRK15174 82 WVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK----------SKQYATVADLAEQAWLAF-SGNSQIFAL 149 (656)
T ss_pred HhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 4455566788888888888877652 3345566666666677 777888888888888763 335667778
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (302)
+...+...|++++|...++.+...... +...+..+ ..+.+.|++++|...++.+.+....++...+..+...+...|+
T Consensus 150 la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~ 227 (656)
T PRK15174 150 HLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGK 227 (656)
T ss_pred HHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCC
Confidence 888888888888888888877665433 33333333 3467788888888888888776433444555556677888999
Q ss_pred chHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 022131 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM----VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240 (302)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 240 (302)
+++|...+++..+.. +.+...+..+...+...|++++ |...+++.... .+.+...+..+...+...|++++|.
T Consensus 228 ~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 228 YQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-NSDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred HHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999988875 5677888888899999999885 78899988875 2346778889999999999999999
Q ss_pred HHHHHHHHCCCCCc-hhhHHHHHHHHhhcchHHHHHHHHHhccccCC
Q 022131 241 QYFVEMIEKGLLPQ-KVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286 (302)
Q Consensus 241 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 286 (302)
..+++..+. .|+ ...+..+..++...|++++|...++++.+...
T Consensus 305 ~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 305 PLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 999999874 344 45677778899999999999999998876543
No 13
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.79 E-value=1.8e-18 Score=135.56 Aligned_cols=261 Identities=15% Similarity=0.153 Sum_probs=115.7
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHH-HHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 022131 5 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNV-LLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83 (302)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (302)
+...+.+.|++++|++++........+|+...|-. +...+.. .++++.|.+.++++...+.. +...+.
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~----------~~~~~~A~~ay~~l~~~~~~-~~~~~~ 82 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS----------LGDYDEAIEAYEKLLASDKA-NPQDYE 82 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc----------cccccccccccccccccccc-cccccc
Confidence 34567789999999999976655532344444444 4444444 88999999999999987533 666777
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHcc
Q 022131 84 IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG-VCPSAETYNCFFKEYRGR 162 (302)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 162 (302)
.++.. ...+++++|.++++...+.. ++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.
T Consensus 83 ~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~ 159 (280)
T PF13429_consen 83 RLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL 159 (280)
T ss_dssp --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred ccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 88877 78999999999998876653 466778889999999999999999999987543 346778889999999999
Q ss_pred CCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 022131 163 KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242 (302)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 242 (302)
|+.++|.+.+++..+.. |.|......++..+...|+.+++.+++....+.. +.|...+..+..++...|+.++|+..
T Consensus 160 G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~ 236 (280)
T PF13429_consen 160 GDPDKALRDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEY 236 (280)
T ss_dssp CHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccc
Confidence 99999999999999985 5568889999999999999999999998887763 55667888999999999999999999
Q ss_pred HHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccc
Q 022131 243 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 243 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
+++..+. .+.|+.+...+..++...|+.++|.++.++..+
T Consensus 237 ~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 237 LEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHH-STT-HHHHHHHHHHHT-----------------
T ss_pred ccccccc-ccccccccccccccccccccccccccccccccc
Confidence 9999874 244788888999999999999999999877543
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.2e-15 Score=118.51 Aligned_cols=276 Identities=16% Similarity=0.224 Sum_probs=192.8
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 022131 1 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80 (302)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (302)
+|.++|.++|+--..++|.+++++-.....+.+..+||.+|.+.+- ....++..+|.+..+.||..
T Consensus 209 t~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~--------------~~~K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY--------------SVGKKLVAEMISQKMTPNLF 274 (625)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh--------------hccHHHHHHHHHhhcCCchH
Confidence 5889999999999999999999999988889999999999987655 22378899999999999999
Q ss_pred HHHHHHHHHHhcCCchh----HHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHH-HHHHHHHHHHC----CCCC----
Q 022131 81 SFSIVLHVYSRAHQPQL----SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED-AEELLGEMVRN----GVCP---- 147 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~~~---- 147 (302)
|||+++++..+.|+++. |.+++.+|++.|+.|+..+|..+|..+.+.++..+ +..++.++... .++|
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 99999999999998765 57788999999999999999999999999888754 45555555432 2222
Q ss_pred ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCC-----------------------------------------CCCCHH
Q 022131 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL-----------------------------------------CVPNMH 186 (302)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------------------------~~~~~~ 186 (302)
|...|...|..|.+..+.+-|.++..-+..... .-|+..
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 344556666667666665555544433321110 245555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-------------------C-----------------------------
Q 022131 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLG-------------------P----------------------------- 218 (302)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------------~----------------------------- 218 (302)
+...++++....|.++-.-++|..++..|.. |
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R 514 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIR 514 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 6667777777778888777777777665521 1
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CC---CchhhHHHHHHHHhhcchHHHHHHHHHhccccCCCc
Q 022131 219 ------DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG-LL---PQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288 (302)
Q Consensus 219 ------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 288 (302)
.....+.+.-.+.+.|..++|.+++..+.+.+ -. |......-++++..+.++...|..+++-+...+...
T Consensus 515 ~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 515 QRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred HHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 22334444555567777777777777664332 22 222333355566666667777777777666555544
Q ss_pred cc
Q 022131 289 GS 290 (302)
Q Consensus 289 ~~ 290 (302)
-.
T Consensus 595 ~E 596 (625)
T KOG4422|consen 595 CE 596 (625)
T ss_pred hh
Confidence 33
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=2.8e-15 Score=130.03 Aligned_cols=258 Identities=11% Similarity=0.028 Sum_probs=208.1
Q ss_pred cCCcchHHHHHHHHHhCC-Ccc-cHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 022131 12 INRIDMAERFLGEMIERG-VEP-NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89 (302)
Q Consensus 12 ~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 89 (302)
.+++++|.+.|+.....+ ..| ....++.+...+.. .|++++|+..|++..... +.+...|..+...+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~----------~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~ 375 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL----------KGKHLEALADLSKSIELD-PRVTQSYIKRASMN 375 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 367899999999998764 233 34567777777777 788999999999998863 22466888899999
Q ss_pred HhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHH
Q 022131 90 SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAM 169 (302)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 169 (302)
...|++++|...+++..+.. +.+..++..+...+...|++++|...|++..+... .+...+..+..++.+.|++++|.
T Consensus 376 ~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998875 34678899999999999999999999999998743 45777888889999999999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHH
Q 022131 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL------DSYTMLIHGLCEKQKWKEACQYF 243 (302)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~ 243 (302)
..+++..+.. +.+...++.+...+...|++++|.+.|++........+. ..++.....+...|++++|.+++
T Consensus 454 ~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 454 ATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999998874 567888999999999999999999999998875321111 11222233344469999999999
Q ss_pred HHHHHCCCCCc-hhhHHHHHHHHhhcchHHHHHHHHHhccccCC
Q 022131 244 VEMIEKGLLPQ-KVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286 (302)
Q Consensus 244 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 286 (302)
++..+. .|+ ...+..+...+.+.|++++|.+++++..+..-
T Consensus 532 ~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 532 EKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 998775 344 45688899999999999999999998766543
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=9.1e-15 Score=126.91 Aligned_cols=263 Identities=8% Similarity=-0.058 Sum_probs=186.7
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 022131 5 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84 (302)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (302)
.-..+.+.|++++|+..|++.... .|+...|..+..+|.+ .+++++|++.++...+.+ +.+...+..
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~----------l~~~~~Ai~~~~~al~l~-p~~~~a~~~ 199 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNA----------LGDWEKVVEDTTAALELD-PDYSKALNR 199 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHH----------hCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 345567778888888888877764 5666677777777777 556666666666665542 223445555
Q ss_pred HHHHHHhcCCchhH------------------------------------------------------------------
Q 022131 85 VLHVYSRAHQPQLS------------------------------------------------------------------ 98 (302)
Q Consensus 85 ll~~~~~~~~~~~a------------------------------------------------------------------ 98 (302)
+..++...|++++|
T Consensus 200 ~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 200 RANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAG 279 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhh
Confidence 55555555555544
Q ss_pred ----------------------------------HHHHHHHHhcC-C-CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 022131 99 ----------------------------------LDKLNFMKEKG-I-CPTVATYSSVVKCLCSCGRIEDAEELLGEMVR 142 (302)
Q Consensus 99 ----------------------------------~~~~~~~~~~~-~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 142 (302)
.+.|+...+.+ . +.....+..+...+...|++++|+..+++..+
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444443332 1 11234566666677778888888888888877
Q ss_pred CCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 022131 143 NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS 222 (302)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 222 (302)
... .....|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...
T Consensus 360 l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~ 435 (615)
T TIGR00990 360 LDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFS 435 (615)
T ss_pred cCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHH
Confidence 532 235677778888888899999999998888775 5667888888888889999999999999888762 345677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccC
Q 022131 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 223 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (302)
+..+..++.+.|++++|+..|++..+. .+-+...+..+..++...|++++|...+++..+..
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 778888888999999999999988764 23346778888889999999999999988866544
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.73 E-value=5.1e-15 Score=120.18 Aligned_cols=270 Identities=10% Similarity=0.067 Sum_probs=154.9
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhh-------------------------
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF------------------------- 56 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~------------------------- 56 (302)
|+.+...+...|++++|+.++..+.+.. +-.+..|..+..++...|+...+...
T Consensus 119 ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 119 YSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAE 197 (966)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhh
Confidence 6667788888899999999999888762 22456777777777776666543321
Q ss_pred ---------------------------------HHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCchhHHHHH
Q 022131 57 ---------------------------------EKTIRNAEKVFDEMRVRGIEPD-VTSFSIVLHVYSRAHQPQLSLDKL 102 (302)
Q Consensus 57 ---------------------------------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~ 102 (302)
.|++..|++.|++.... .|+ ...|-.|...|...+.++.|+..+
T Consensus 198 Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 44555555555555544 222 345555555555555556655555
Q ss_pred HHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCC
Q 022131 103 NFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182 (302)
Q Consensus 103 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 182 (302)
.+..... +-....+..+...|...|.++.|+..+++.++... .-+..|+.|..++-..|+..+|.+.+....... +
T Consensus 276 ~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--p 351 (966)
T KOG4626|consen 276 LRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--P 351 (966)
T ss_pred HHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--C
Confidence 5554432 11333444444455556666666666666665422 224566666666666677777777666666653 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCch-hhHHHH
Q 022131 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK-VTFETL 261 (302)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l 261 (302)
......+.|...+...|.+++|..+|....+- .+--...++.|...|-++|++++|+..+++.++ +.|+. ..++.+
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v-~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~Nm 428 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEV-FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNM 428 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh-ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhc
Confidence 44455566666666666666666666665553 111234455566666666666666666665544 34432 334444
Q ss_pred HHHHhhcchHHHHHHHHHhc
Q 022131 262 YRGLIQSDMLRTWRRLKKKL 281 (302)
Q Consensus 262 ~~~~~~~g~~~~a~~~~~~~ 281 (302)
-..|...|+.+.|.+.+.+.
T Consensus 429 Gnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred chHHHHhhhHHHHHHHHHHH
Confidence 44444444444444444443
No 18
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.2e-14 Score=113.02 Aligned_cols=253 Identities=19% Similarity=0.343 Sum_probs=206.9
Q ss_pred cccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCC
Q 022131 31 EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGI 110 (302)
Q Consensus 31 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 110 (302)
+-+..++..+|.+.++ .-..+.|.+++++......+.+..+||.+|.+-+-.-+ .+++.+|.....
T Consensus 204 PKT~et~s~mI~Gl~K----------~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCK----------FSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred CCCchhHHHHHHHHHH----------HHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 4467899999999999 88899999999999988788899999999987654333 889999999999
Q ss_pred CcCHHHHHHHHHHHhccCCHHH----HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchH-HHHHHHHHHhC----CC-
Q 022131 111 CPTVATYSSVVKCLCSCGRIED----AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG-AMKLYRQMKED----GL- 180 (302)
Q Consensus 111 ~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~- 180 (302)
.||..|+|+++++.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.+++.+ +..++.++... ..
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 9999999999999999998765 56788899999999999999999999999998855 34444444322 11
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 022131 181 --CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS----GLGPD---LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 251 (302)
Q Consensus 181 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 251 (302)
-+.+...|...++.|.+..+.+-|.++..-+... -+.|+ ..-|..+....++....+.....|+.|+-.-+
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 1234556778888899999999998887766542 12333 24466778888899999999999999988778
Q ss_pred CCchhhHHHHHHHHhhcchHHHHHHHHHhccccCCCcccchhhhcc
Q 022131 252 LPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 297 (302)
Q Consensus 252 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i 297 (302)
.|+..+...++++....|.++-..+++..+...|-++...+...++
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil 475 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEIL 475 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 8999999999999999999999999999999999887776665544
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.72 E-value=6.3e-15 Score=119.66 Aligned_cols=269 Identities=15% Similarity=0.111 Sum_probs=225.5
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCccc-HHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPN-VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (302)
|+.|-..+-..|+...|++.|++..+. .|+ ...|-.|-..|.. .+.+++|...|.+..... +....
T Consensus 221 wsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke----------~~~~d~Avs~Y~rAl~lr-pn~A~ 287 (966)
T KOG4626|consen 221 WSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKE----------ARIFDRAVSCYLRALNLR-PNHAV 287 (966)
T ss_pred ehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHH----------HhcchHHHHHHHHHHhcC-Ccchh
Confidence 566777788899999999999999876 443 4578888888888 888999999999988763 23567
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (302)
.+..+...|...|+.+.|+..+++..+.... -...|+.|..++-..|++.+|++.+.+...... ....+.+.|...|.
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~ 365 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYR 365 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHH
Confidence 8888999999999999999999999887532 467899999999999999999999999988643 45778889999999
Q ss_pred ccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 022131 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD-LDSYTMLIHGLCEKQKWKEA 239 (302)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a 239 (302)
..|.+++|..+|....+-. +.-....+.|...|-..|++++|...+++... ++|+ ...|+.+-..|-..|+.+.|
T Consensus 366 E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHH
Confidence 9999999999999998874 44566789999999999999999999999887 5676 46888899999999999999
Q ss_pred HHHHHHHHHCCCCCch-hhHHHHHHHHhhcchHHHHHHHHHhccccCCCcccc
Q 022131 240 CQYFVEMIEKGLLPQK-VTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSE 291 (302)
Q Consensus 240 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 291 (302)
++.+.+.+. +.|.. ..++.|...|..+|+..+|++-++...+-...+...
T Consensus 442 ~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 442 IQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred HHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 999999887 45653 678889999999999999999999877766655443
No 20
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=1.2e-13 Score=113.17 Aligned_cols=215 Identities=9% Similarity=0.028 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFS--IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 134 (302)
.|+++.|...+.++.+. .|+..... .....+...|+++.|...++.+.+.. +-+......+...|.+.|++++|.
T Consensus 131 ~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 131 RGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred CCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 55666666666666654 33332221 22455666666666666666666654 225556666666666666666666
Q ss_pred HHHHHHHHCCC-----------------------------------------CCChhhHHHHHHHHHccCCchHHHHHHH
Q 022131 135 ELLGEMVRNGV-----------------------------------------CPSAETYNCFFKEYRGRKDANGAMKLYR 173 (302)
Q Consensus 135 ~~~~~~~~~~~-----------------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 173 (302)
+++..+.+.+. +.++.....+...+...|+.++|..++.
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66665554322 1244455666777888889999999988
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 022131 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253 (302)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 253 (302)
+..+. +|+.... ++.+....++.+++.+..+...+. .+-|...+..+...+.+.+++++|.+.|+...+ ..|
T Consensus 288 ~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P 359 (398)
T PRK10747 288 DGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRP 359 (398)
T ss_pred HHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCC
Confidence 88874 5665322 233334558888898888888876 344667788899999999999999999999987 479
Q ss_pred chhhHHHHHHHHhhcchHHHHHHHHHhcc
Q 022131 254 QKVTFETLYRGLIQSDMLRTWRRLKKKLD 282 (302)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (302)
+..++..+...+.+.|+.++|.+++++-.
T Consensus 360 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 360 DAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999988753
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.68 E-value=5.3e-13 Score=119.20 Aligned_cols=256 Identities=14% Similarity=0.019 Sum_probs=167.8
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (302)
.+..++.. +++++|+..+.+.... .|+......+...+.. .|++++|...|+++... +|+...+.
T Consensus 482 ~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~----------~Gr~eeAi~~~rka~~~--~p~~~a~~ 546 (987)
T PRK09782 482 RLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQ----------VEDYATALAAWQKISLH--DMSNEDLL 546 (987)
T ss_pred HHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHH----------CCCHHHHHHHHHHHhcc--CCCcHHHH
Confidence 33444444 6777788877776655 3554332223333345 66777888888776554 34444556
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 022131 84 IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163 (302)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 163 (302)
.+...+.+.|+.++|...+++..+.+ +.+...+..+.....+.|++++|...+++..+.. |+...+..+..++.+.|
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCC
Confidence 66677777888888888888777664 2233333333444445588888888888877653 45777777777888888
Q ss_pred CchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 022131 164 DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243 (302)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 243 (302)
+.++|...+++..... +.+...++.+..++...|+.++|...+++..+. .+-+...+..+..++...|++++|...+
T Consensus 624 ~~deA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 624 NVPAAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888887775 566677777777778888888888888877775 2345667777778888888888888888
Q ss_pred HHHHHCCCCCch-hhHHHHHHHHhhcchHHHHHHHHHhcc
Q 022131 244 VEMIEKGLLPQK-VTFETLYRGLIQSDMLRTWRRLKKKLD 282 (302)
Q Consensus 244 ~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (302)
++..+. .|+. .+.-..........+++.+.+-+++..
T Consensus 701 ~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 701 RLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 887763 4544 233333444555556666666555443
No 22
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=3e-13 Score=111.49 Aligned_cols=221 Identities=9% Similarity=-0.036 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHH---hccCCHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL---CSCGRIEDA 133 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~a 133 (302)
.++++.|...++.+.+.. +-+..+...+...+.+.|+++.|.+.+..+.+.+..++......-..++ ...+..++.
T Consensus 166 ~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444555555555555543 2234445555555555555555555555555544321111111111111 111111222
Q ss_pred HHHHHHHHHCCC---CCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHH-HHHHHH--HHHhcCCHHHHHHH
Q 022131 134 EELLGEMVRNGV---CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS-YNILIG--MFMALNRMDMVREI 207 (302)
Q Consensus 134 ~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~--~~~~~~~~~~a~~~ 207 (302)
.+.+..+.+... +.+...+..+...+...|+.++|.+.+++..+.. |+... ...++. .....++.+.+.+.
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHHHH
Confidence 223333222211 1256666777777888888888888888888763 33321 101222 22334667777887
Q ss_pred HHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhcc
Q 022131 208 WNDVKGSGLGPDL--DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282 (302)
Q Consensus 208 ~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (302)
++...+. .+-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus 322 ~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 322 IEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7776664 22234 55668888889999999999999964444457888888899999999999999999988743
No 23
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.66 E-value=3.8e-13 Score=124.37 Aligned_cols=258 Identities=13% Similarity=0.058 Sum_probs=202.9
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 022131 5 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84 (302)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (302)
+...+...|++++|++.|++..+.. +-+...+..+...+.+ .|++++|...|+++.+.. +.+...+..
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~----------~G~~~~A~~~l~~al~~~-P~~~~~~~a 534 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQ----------AGQRSQADALMRRLAQQK-PNDPEQVYA 534 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 4456778899999999999998873 2355677778888888 888999999999998763 235555555
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCcCH---------HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKGICPTV---------ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (302)
+...+...++.++|...++.+......++. ..+..+...+...|+.++|..+++. .+.+...+..+
T Consensus 535 ~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~L 609 (1157)
T PRK11447 535 YGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHH
Confidence 666677899999999999886543222221 1233456778899999999999882 24566778888
Q ss_pred HHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 022131 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235 (302)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 235 (302)
...+...|++++|...|+++.+.. +.+...+..+...+...|+.++|.+.++...+. -+.+...+..+..++...|+
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~~~~~~~~la~~~~~~g~ 686 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-ANDSLNTQRRVALAWAALGD 686 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHhCCC
Confidence 999999999999999999999986 678889999999999999999999999988765 22355667778888999999
Q ss_pred HHHHHHHHHHHHHCCC--CC---chhhHHHHHHHHhhcchHHHHHHHHHhcc
Q 022131 236 WKEACQYFVEMIEKGL--LP---QKVTFETLYRGLIQSDMLRTWRRLKKKLD 282 (302)
Q Consensus 236 ~~~a~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (302)
+++|.++++++....- .| +...+..+...+...|+.++|.+.+++..
T Consensus 687 ~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 687 TAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999986421 22 22456666788899999999999998864
No 24
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.65 E-value=8.8e-13 Score=121.99 Aligned_cols=262 Identities=11% Similarity=-0.004 Sum_probs=182.0
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHH--
Q 022131 7 YGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI-- 84 (302)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 84 (302)
..+.+.|++++|++.|+++.+.. +.+...+..+...+.. .|++++|++.|++..+... .+...+..
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~----------~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~ 426 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMA----------RKDYAAAERYYQQALRMDP-GNTNAVRGLA 426 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 35667888999999998888762 3355666677777777 6777888888887776531 12222222
Q ss_pred ----------------------------------------HHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q 022131 85 ----------------------------------------VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124 (302)
Q Consensus 85 ----------------------------------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 124 (302)
+...+...|++++|.+.+++..+... -+...+..+...|
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~ 505 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDL 505 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 23344567888888888888887653 2566777888888
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCC-------------------------
Q 022131 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG------------------------- 179 (302)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------- 179 (302)
.+.|++++|...++++.+... .+...+..+...+...++.++|...++.+....
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 889999999999988876532 233333322223333444444433333221000
Q ss_pred -------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022131 180 -------------LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246 (302)
Q Consensus 180 -------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 246 (302)
..+.+...+..+...+.+.|+.++|...+++.... -+.+...+..+...+...|++++|.+.++.+
T Consensus 585 ~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 585 DSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-EPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 01455666777888889999999999999998886 3446788899999999999999999999988
Q ss_pred HHCCCCC-chhhHHHHHHHHhhcchHHHHHHHHHhccccC
Q 022131 247 IEKGLLP-QKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 247 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (302)
.+. .| +..+...+..++...|++++|.++++++.+..
T Consensus 664 l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 664 PAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred hcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 763 34 34556667788889999999999999987654
No 25
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.9e-12 Score=100.85 Aligned_cols=263 Identities=13% Similarity=0.068 Sum_probs=193.0
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCC--CCHHHHHH
Q 022131 7 YGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIE--PDVTSFSI 84 (302)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 84 (302)
.++....+.+++.+=.+.....|++-+...-+....+... ..++++|+.+|+++...++- -|..+|..
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~----------~rDfD~a~s~Feei~knDPYRl~dmdlySN 304 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYN----------QRDFDQAESVFEEIRKNDPYRLDDMDLYSN 304 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhh----------hhhHHHHHHHHHHHHhcCCCcchhHHHHhH
Confidence 3444445666666666666666665444433333333444 67788888888887765311 13344444
Q ss_pred H-------------------------------HHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHH
Q 022131 85 V-------------------------------LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133 (302)
Q Consensus 85 l-------------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 133 (302)
+ .+.|+-.++.++|...|+...+.+.. ....|+.+..-|...++...|
T Consensus 305 ~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 305 VLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred HHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHH
Confidence 3 34566667788999999999888643 677888888899999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022131 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
.+-++...+..+ .|-..|-.+.++|...+.+.-|+-.|++..+-. +.|...|.+|..+|.+.++.++|.+.|.....
T Consensus 384 i~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 384 IESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999998754 588899999999999999999999999998886 67889999999999999999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCc--hhhHHHHHHHHhhcchHHHHHHHHHhcccc
Q 022131 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLLPQ--KVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 214 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (302)
.|-. +...+..|...|-+.++..+|...|.+.++. |...+ .....-|..-+.+.+++++|..+.......
T Consensus 461 ~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 461 LGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred cccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 7533 6688889999999999999999999887653 32222 222233556667788888887766554443
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=4.1e-15 Score=116.59 Aligned_cols=226 Identities=12% Similarity=0.065 Sum_probs=115.7
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 022131 5 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84 (302)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (302)
+.......++++.|++.++++...+.. ++..+..++.. .. .+++++|.++++...+. .++...+..
T Consensus 50 ~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~----------~~~~~~A~~~~~~~~~~--~~~~~~l~~ 115 (280)
T PF13429_consen 50 LADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ----------DGDPEEALKLAEKAYER--DGDPRYLLS 115 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-ccccccccccc-cc----------ccccccccccccccccc--ccccchhhH
Confidence 334455678999999999999887533 55667777766 56 78889999998887665 356777888
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcC-CCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKG-ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 163 (302)
++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.+++..+..+ .+......++..+...|
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDP-DDPDARNALAWLLIDMG 194 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCC
Confidence 9999999999999999999987543 345778899999999999999999999999998743 35788899999999999
Q ss_pred CchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 022131 164 DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243 (302)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 243 (302)
+.+++..++....+.. +.|...+..+..++...|+.++|...+++..+. .+.|......+..++...|+.++|.++.
T Consensus 195 ~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 195 DYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp HHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT------------
T ss_pred ChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 9999999999888875 456677889999999999999999999998885 3458888899999999999999999998
Q ss_pred HHHHH
Q 022131 244 VEMIE 248 (302)
Q Consensus 244 ~~~~~ 248 (302)
++..+
T Consensus 272 ~~~~~ 276 (280)
T PF13429_consen 272 RQALR 276 (280)
T ss_dssp -----
T ss_pred ccccc
Confidence 87653
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.63 E-value=1.4e-12 Score=99.41 Aligned_cols=204 Identities=12% Similarity=0.037 Sum_probs=169.8
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 022131 77 PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156 (302)
Q Consensus 77 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 156 (302)
.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+... .+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 345677888899999999999999999998764 33677888899999999999999999999988753 4567788888
Q ss_pred HHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 022131 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236 (302)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 236 (302)
..+...|++++|...+.+.......+.....+..+...+...|++++|...+.+..... +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 99999999999999999998754213345667778889999999999999999988763 33567888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhcccc
Q 022131 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 237 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (302)
++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.+.
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999876 3445667777788888999999999998876543
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.62 E-value=2.7e-12 Score=114.72 Aligned_cols=232 Identities=9% Similarity=0.012 Sum_probs=184.3
Q ss_pred cHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCc
Q 022131 33 NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP 112 (302)
Q Consensus 33 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (302)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...++++... +|
T Consensus 476 ~~~a~~~LG~~l~~-----------~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p 540 (987)
T PRK09782 476 DAAAWNRLAKCYRD-----------TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM 540 (987)
T ss_pred CHHHHHHHHHHHHh-----------CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 45566666655543 4567788888888776 466554444555667899999999999998665 44
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 022131 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192 (302)
Q Consensus 113 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 192 (302)
+...+..+..++.+.|+.++|...+++..+... .+...+..+.......|++++|...+++..+. .|+...+..+.
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA 616 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARA 616 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHH
Confidence 555667778888999999999999999988642 33334444444555679999999999999987 46788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-chhhHHHHHHHHhhcchH
Q 022131 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP-QKVTFETLYRGLIQSDML 271 (302)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 271 (302)
.++.+.|+.++|...+++..... +.+...++.+..++...|++++|+..+++..+. .| +...+..+..++...|++
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999873 446778888888999999999999999999874 44 567788899999999999
Q ss_pred HHHHHHHHhccccCC
Q 022131 272 RTWRRLKKKLDEESI 286 (302)
Q Consensus 272 ~~a~~~~~~~~~~~~ 286 (302)
++|...+++..+...
T Consensus 694 ~eA~~~l~~Al~l~P 708 (987)
T PRK09782 694 AATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999876543
No 29
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=6.8e-12 Score=94.52 Aligned_cols=225 Identities=14% Similarity=0.065 Sum_probs=171.8
Q ss_pred hcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCC---HHHHHHHHH
Q 022131 11 KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPD---VTSFSIVLH 87 (302)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~ 87 (302)
-..+.++|.++|-+|.+.. +-+..+--+|-+.|-+ .|..+.|+++.+.+..+.--+. ......|.+
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRs----------RGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRS----------RGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHh----------cchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 3578899999999998751 2233344445555555 8899999999999887521111 234556777
Q ss_pred HHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHccC
Q 022131 88 VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS----AETYNCFFKEYRGRK 163 (302)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~ 163 (302)
-|...|-+|.|+++|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+..+. ...|..+...+....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 88889999999999999988652 3566788899999999999999999998888765443 235566666667778
Q ss_pred CchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 022131 164 DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243 (302)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 243 (302)
+.+.|...+.+..+.+ +..+..-..+.+.....|+++.|.+.|+.+.+.+..--..+...|..+|.+.|+.++....+
T Consensus 195 ~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 195 DVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8888999999888876 55666666777888889999999999999988765556678888889999999999888888
Q ss_pred HHHHHC
Q 022131 244 VEMIEK 249 (302)
Q Consensus 244 ~~~~~~ 249 (302)
.++.+.
T Consensus 273 ~~~~~~ 278 (389)
T COG2956 273 RRAMET 278 (389)
T ss_pred HHHHHc
Confidence 887664
No 30
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=1.7e-11 Score=94.91 Aligned_cols=257 Identities=12% Similarity=0.130 Sum_probs=201.2
Q ss_pred hcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 022131 11 KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90 (302)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (302)
-.|+|.+|+++..+-.+.+-.| ...|..-..+.-. .|+.+.+-.++.+.-+..-.++....-+..+...
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~q----------rgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQ----------RGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHh----------cccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 3689999999999987775333 2344444445555 7888999999999887644566777778888889
Q ss_pred hcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-------hhhHHHHHHHHHccC
Q 022131 91 RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS-------AETYNCFFKEYRGRK 163 (302)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~ 163 (302)
..|+.+.|..-+.++.+.+.. .........++|.+.|++.+...++..+.+.|.-.+ ..+|..+++-....+
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999888644 677889999999999999999999999998876444 346677777666666
Q ss_pred CchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------------------------
Q 022131 164 DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP------------------------- 218 (302)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------- 218 (302)
..+.-...|+.....- +.++..-..++.-+.+.|+.++|.++..+..+++..|
T Consensus 244 ~~~gL~~~W~~~pr~l--r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 244 GSEGLKTWWKNQPRKL--RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred cchHHHHHHHhccHHh--hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHH
Confidence 6666666777665553 4556666777777888888888888877766554322
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccc
Q 022131 219 -----DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 219 -----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
++-.+..|-..|.+++.+.+|...|+...+ ..|+..+|..+..++.+.|+..+|.++.++-.-
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 456778888999999999999999998776 579999999999999999999999999887553
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=4.3e-12 Score=104.19 Aligned_cols=221 Identities=10% Similarity=0.020 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHH--HHHHHHHhccCCHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY--SSVVKCLCSCGRIEDAE 134 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~ 134 (302)
.|+++.|++.+.......-.| ...+-.......+.|+++.|...+.++.+. .|+.... ......+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 588899998888766552222 223333355558899999999999999876 3454332 24467889999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCC-------------------------------
Q 022131 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP------------------------------- 183 (302)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------------------- 183 (302)
..++++.+..+ -++.....+...|...|+++++.+++..+.+.....+
T Consensus 174 ~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999998864 4678888999999999999999999888886653111
Q ss_pred ---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-
Q 022131 184 ---------NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP- 253 (302)
Q Consensus 184 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p- 253 (302)
++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++.+..+...+. .|
T Consensus 253 ~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~ 326 (398)
T PRK10747 253 KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGD 326 (398)
T ss_pred HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCC
Confidence 2223345567777889999999999888774 4555322 233334568999999999988765 45
Q ss_pred chhhHHHHHHHHhhcchHHHHHHHHHhccccCCC
Q 022131 254 QKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287 (302)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 287 (302)
|...+..+.+.|.+.+++++|.+.|+...+...+
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 4456778889999999999999999998876543
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=99.60 E-value=7.1e-12 Score=107.25 Aligned_cols=260 Identities=11% Similarity=0.079 Sum_probs=185.1
Q ss_pred CCcchHHHHHHHHHhCCCccc-HHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 022131 13 NRIDMAERFLGEMIERGVEPN-VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91 (302)
Q Consensus 13 g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (302)
+++++|.++|++..+. .|+ ...|..+..++...+...... -.+++++|...+++..+.+ +-+...+..+...+..
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~-~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFD-KQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcc-cchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3467899999999876 444 445555555444322110000 0467899999999999875 3377888888899999
Q ss_pred cCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHH
Q 022131 92 AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171 (302)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 171 (302)
.|++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|...
T Consensus 351 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHH
Confidence 999999999999999886 336778888999999999999999999999987543 223334445556778999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-
Q 022131 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD-LDSYTMLIHGLCEKQKWKEACQYFVEMIEK- 249 (302)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 249 (302)
++++..... +.+...+..+..++...|+.++|...+.++... .|+ ....+.+...|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~-p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 429 GDELRSQHL-QDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHHhcc-ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 999887641 234556777888889999999999999987664 333 444555666667777 5888888877653
Q ss_pred CCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccCC
Q 022131 250 GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286 (302)
Q Consensus 250 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 286 (302)
.-.|...-+ +-..+.-.|+.+.+..+ +++.+.+.
T Consensus 504 ~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 504 QRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred hHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 223333333 34446666777777666 77776654
No 33
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.59 E-value=1.7e-11 Score=108.85 Aligned_cols=277 Identities=12% Similarity=0.053 Sum_probs=193.6
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhh--------------------------
Q 022131 3 TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF-------------------------- 56 (302)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~-------------------------- 56 (302)
..+..++...|+.++|+..++++.+.. +-+...+..+...+...+...++...
T Consensus 120 ~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~ 198 (765)
T PRK10049 120 LALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLS 198 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence 345667778888888888888888762 22344444445444443332211100
Q ss_pred -------HHHH---HHHHHHHHHHHhc-CCCCCHH-HH----HHHHHHHHhcCCchhHHHHHHHHHhcCCC-cCHHHHHH
Q 022131 57 -------EKTI---RNAEKVFDEMRVR-GIEPDVT-SF----SIVLHVYSRAHQPQLSLDKLNFMKEKGIC-PTVATYSS 119 (302)
Q Consensus 57 -------~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 119 (302)
.+++ ++|++.++.+.+. ...|+.. .+ ...+..+...|++++|...|+.+.+.+.+ |+. ....
T Consensus 199 ~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~ 277 (765)
T PRK10049 199 FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRW 277 (765)
T ss_pred cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHH
Confidence 1122 5677777777753 1222221 11 11133456779999999999999887632 322 2233
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCC----------CCCC--
Q 022131 120 VVKCLCSCGRIEDAEELLGEMVRNGVCP---SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL----------CVPN-- 184 (302)
Q Consensus 120 ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~-- 184 (302)
+...|...|++++|+..|+++.+..... .......+..++...|++++|...++.+..... ..|+
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 5778999999999999999988653211 134566677788999999999999999987630 0123
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCc-hhhHHHHH
Q 022131 185 -MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ-KVTFETLY 262 (302)
Q Consensus 185 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~ 262 (302)
...+..+...+...|+.++|.++++++... .+.+...+..+...+...|++++|++.+++..+. .|+ ...+....
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a 434 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQA 434 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHH
Confidence 234566778888999999999999999876 4557888999999999999999999999999874 465 45666667
Q ss_pred HHHhhcchHHHHHHHHHhcccc
Q 022131 263 RGLIQSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~~~~~ 284 (302)
..+...|++++|..+++++.+.
T Consensus 435 ~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 435 WTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHhCCHHHHHHHHHHHHHh
Confidence 7888999999999999888754
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=99.59 E-value=9e-12 Score=106.62 Aligned_cols=238 Identities=10% Similarity=-0.030 Sum_probs=174.6
Q ss_pred ccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---------cCCchhHHHHH
Q 022131 32 PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR---------AHQPQLSLDKL 102 (302)
Q Consensus 32 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~~~~~~a~~~~ 102 (302)
.+...|...+.+........ .+.+++|...|++..+... -+...|..+..++.. .+++++|...+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~-----~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~ 327 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYT-----PYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHA 327 (553)
T ss_pred CChHHHHHHHHhHHHHHccC-----HHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 34556666666643321111 5678899999999998742 245566666655442 24478999999
Q ss_pred HHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCC
Q 022131 103 NFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182 (302)
Q Consensus 103 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 182 (302)
++..+.+. -+...+..+...+...|++++|...|++..+.+. .+...+..+...+...|++++|...+++..+.. +
T Consensus 328 ~~Al~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P 403 (553)
T PRK12370 328 IKATELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLD--P 403 (553)
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C
Confidence 99998863 3778888888899999999999999999998753 456788888999999999999999999999885 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchh-hHHHH
Q 022131 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV-TFETL 261 (302)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l 261 (302)
.+...+..++..+...|++++|...+++......+-+...+..+..++...|++++|...+.++... .|+.. ....+
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l 481 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLL 481 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHH
Confidence 3444444455556778999999999999876532224556777888889999999999999987653 44443 34445
Q ss_pred HHHHhhcchHHHHHHHHHhccc
Q 022131 262 YRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 262 ~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
...+...|+ ++...++.+.+
T Consensus 482 ~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 482 YAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred HHHHhccHH--HHHHHHHHHHH
Confidence 556677774 67776666554
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=9.6e-13 Score=107.80 Aligned_cols=202 Identities=11% Similarity=-0.020 Sum_probs=163.2
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 022131 77 PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156 (302)
Q Consensus 77 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 156 (302)
-.+.+|..+..+|.-.++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+.... -+-.+|.-+.
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~-rhYnAwYGlG 496 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP-RHYNAWYGLG 496 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc-hhhHHHHhhh
Confidence 35678999999999999999999999999887522 677888888888888899999999998876432 2445566677
Q ss_pred HHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 022131 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236 (302)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 236 (302)
..|.+.++.+.|+-.|+...+-+ +.+.+....+...+.+.|+.|+|++++++...... .|+..--.-+..+...+++
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhcch
Confidence 88999999999999999999887 67788888888899999999999999999887643 3555555566777788999
Q ss_pred HHHHHHHHHHHHCCCCCc-hhhHHHHHHHHhhcchHHHHHHHHHhccccC
Q 022131 237 KEACQYFVEMIEKGLLPQ-KVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 237 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (302)
++|+..++++++ +.|+ ...|..+.+.|.+.|+.+.|..-|.-+.+..
T Consensus 574 ~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 574 VEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 999999999988 4565 4667777889999999999988776554433
No 36
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.58 E-value=8.3e-12 Score=95.21 Aligned_cols=202 Identities=11% Similarity=0.035 Sum_probs=169.5
Q ss_pred ccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCC
Q 022131 32 PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC 111 (302)
Q Consensus 32 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 111 (302)
.....+..+...+.. .+++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+...
T Consensus 29 ~~~~~~~~la~~~~~----------~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~- 96 (234)
T TIGR02521 29 KAAKIRVQLALGYLE----------QGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP- 96 (234)
T ss_pred cHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-
Confidence 345677777888888 788999999999998764 33577888899999999999999999999988753
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHH
Q 022131 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV-CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190 (302)
Q Consensus 112 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 190 (302)
.+...+..+...+...|++++|...+++...... ......+..+...+...|++++|...+.+..... +.+...+..
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~ 174 (234)
T TIGR02521 97 NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLE 174 (234)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHH
Confidence 3667888889999999999999999999987532 2234567778888999999999999999998875 556778889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999999999998876 345677777888888999999999999888765
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=7.9e-12 Score=103.12 Aligned_cols=265 Identities=9% Similarity=-0.002 Sum_probs=185.4
Q ss_pred HhcCCcchHHHHHHHHHhCCCcccHHHH-HHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 022131 10 CKINRIDMAERFLGEMIERGVEPNVVTY-NVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88 (302)
Q Consensus 10 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 88 (302)
...|+++.|.+.+....+. .|+...+ -....+... .|+.+.|.+.+++..+....+.....-.....
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~----------~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQ----------RGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 3579999999999887775 4544333 333445555 78899999999998775322222344445788
Q ss_pred HHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHH-HHHHHH---HccCC
Q 022131 89 YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN-CFFKEY---RGRKD 164 (302)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~ 164 (302)
+...|+++.|...++.+.+.. +-+..++..+...+.+.|++++|.+.++.+.+.+.. +...+. .-..++ ...+.
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999986 337778999999999999999999999999998753 333332 111222 23333
Q ss_pred chHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHH--HHHcCCHHHH
Q 022131 165 ANGAMKLYRQMKEDGL--CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSY-TMLIHG--LCEKQKWKEA 239 (302)
Q Consensus 165 ~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~--~~~~g~~~~a 239 (302)
.+++.+.+..+.+... .+.+...+..+...+...|+.++|.+++++..+.. |+.... ..++.. ....++.+.+
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHH
Confidence 3333445555544420 02478889999999999999999999999999863 443311 012222 2445788899
Q ss_pred HHHHHHHHHCCCCCch---hhHHHHHHHHhhcchHHHHHHHHHhccccCCCcccch
Q 022131 240 CQYFVEMIEKGLLPQK---VTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEF 292 (302)
Q Consensus 240 ~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 292 (302)
.+.+++..+. .|+. ....++...+.+.|++++|.+.+++.......|+...
T Consensus 319 ~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 319 EKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred HHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 9999888764 4544 4556788999999999999999996544444555544
No 38
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.57 E-value=2e-11 Score=108.40 Aligned_cols=263 Identities=11% Similarity=0.052 Sum_probs=177.2
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 022131 5 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84 (302)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (302)
.+......|+.++|++++...... .+.+...+..+...+.. .+++++|..+|++..+.. +.+...+..
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~----------~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRN----------LKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 355667778888888888887752 14455567777777777 777788888888877763 334566677
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (302)
+...+...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+..+ .+...+..+..++...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCC
Confidence 7778888888888888888887763 33555 77777788888888888888888887643 244444555555555555
Q ss_pred chHHH----------------------------------------------HHHHHHHhCCCCCCCHH-HHH----HHHH
Q 022131 165 ANGAM----------------------------------------------KLYRQMKEDGLCVPNMH-SYN----ILIG 193 (302)
Q Consensus 165 ~~~a~----------------------------------------------~~~~~~~~~~~~~~~~~-~~~----~l~~ 193 (302)
.+.|+ ..++.+.+.....|+.. .+. ..+.
T Consensus 166 ~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 166 SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 44444 34444443210022211 111 1123
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCc-----hhhHHHHHHHHhh
Q 022131 194 MFMALNRMDMVREIWNDVKGSGLG-PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ-----KVTFETLYRGLIQ 267 (302)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~ 267 (302)
.+...|++++|...|+.+.+.+.+ |+. .-..+..+|...|++++|...|+++.+.. |. ......+..++..
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHh
Confidence 445778999999999999887532 322 22225778899999999999999987642 22 2446667778899
Q ss_pred cchHHHHHHHHHhccccC
Q 022131 268 SDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 268 ~g~~~~a~~~~~~~~~~~ 285 (302)
.|++++|.++++++.+..
T Consensus 323 ~g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 323 SENYPGALTVTAHTINNS 340 (765)
T ss_pred cccHHHHHHHHHHHhhcC
Confidence 999999999999888654
No 39
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.56 E-value=2.3e-11 Score=106.79 Aligned_cols=224 Identities=14% Similarity=0.117 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 136 (302)
.|++++|+++|+++.+.... +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+..
T Consensus 115 ~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 46667777777777766422 4555556666677777777777777776655 34444444444444445555557777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHH-------------------------------------------
Q 022131 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR------------------------------------------- 173 (302)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------------------------------------------- 173 (302)
++++.+... .+...+..+..+..+.|-...|.++..
T Consensus 192 ~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 192 SSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 777776632 344555555555555444333332222
Q ss_pred -----HHHhCCCCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 022131 174 -----QMKEDGLCVPNM-HSY----NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243 (302)
Q Consensus 174 -----~~~~~~~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 243 (302)
.+...-...|.. ..| .-.+-++...|++.++++.++.+...+.+....+-..+.++|...+++++|..++
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 222110001211 111 2234466678888899999999888776545567788899999999999999999
Q ss_pred HHHHHCC-----CCCchhhHHHHHHHHhhcchHHHHHHHHHhcccc
Q 022131 244 VEMIEKG-----LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 244 ~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (302)
+.+.... ..++......|.-++..++++++|..+++++.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 9986542 1223344577899999999999999999999874
No 40
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=4.9e-13 Score=112.74 Aligned_cols=248 Identities=20% Similarity=0.210 Sum_probs=161.7
Q ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHH
Q 022131 20 RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL 99 (302)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 99 (302)
.++..+...|+.|+..||..++..|+. .|+++.|- +|.-|.....+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~----------~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCT----------KGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcc----------cCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC
Confidence 567788889999999999999999999 55555565 7888887777778888999999988888887776
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHH---HHHHHHHHHH----CCCCCChhhH---------------HHHHH
Q 022131 100 DKLNFMKEKGICPTVATYSSVVKCLCSCGRIED---AEELLGEMVR----NGVCPSAETY---------------NCFFK 157 (302)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~----~~~~~~~~~~---------------~~l~~ 157 (302)
.|...||+.+..+|...||+.. +.+.+..+.. .|.. ...-| ...+.
T Consensus 80 -----------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~il 147 (1088)
T KOG4318|consen 80 -----------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAIL 147 (1088)
T ss_pred -----------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHH
Confidence 5778899999999999988755 2222222211 2221 11111 12222
Q ss_pred HHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 022131 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237 (302)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 237 (302)
.....|.++.+++++..+.......|... +++-+... +....++........-.|+..+|..++.+-..+|+.+
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence 23334444444444444333221111111 23332222 2233344443333222578888888888888888888
Q ss_pred HHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccCCCcccchhhhcccC
Q 022131 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 299 (302)
Q Consensus 238 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (302)
.|..++.+|.+.|++.+..-|..|+-+ .++...++.+++.|.+.|+.|+++++...+.|
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip 280 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIP 280 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHh
Confidence 888888888888888877777777655 77777788888888888888888877665544
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=1.8e-11 Score=96.65 Aligned_cols=256 Identities=11% Similarity=0.053 Sum_probs=190.4
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHH-HHHHHhccc-CCcchh------------------------hHHHH
Q 022131 7 YGWCKINRIDMAERFLGEMIERGVEPNVVTYNVL-LNGVCRRAS-LHPSER------------------------FEKTI 60 (302)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~-~~~~~~------------------------~~~~~ 60 (302)
..+.+.|+++.|++++.-+.+..-+.-...-+.| +--+.+.|+ +..+.. ..|++
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 3578999999999999888765322222221211 111111111 000000 17888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 022131 61 RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140 (302)
Q Consensus 61 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 140 (302)
++|.+.|++....+..-....||+ .-.+-..|++++|+..|-++... +.-+..+...+.+.|-...+..+|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999887643322333443 33466789999999998887554 2236778888899999999999999999887
Q ss_pred HHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 022131 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220 (302)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (302)
... ++.|+...+.+...|-+.|+...|.+.+-.-.+-- +.+..+...|...|....-++++...|++..- ++|+.
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryf--p~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~ 659 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF--PCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQ 659 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccccc--CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence 654 55678889999999999999999998877665553 77899999999999999999999999998765 68999
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcch
Q 022131 221 DSYTMLIHGL-CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270 (302)
Q Consensus 221 ~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 270 (302)
.-|..++..| .+.|++.+|.++++...++ ++-|......|++.+...|.
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 9999888766 5689999999999998765 77788899999998887774
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.51 E-value=1.8e-10 Score=101.27 Aligned_cols=90 Identities=11% Similarity=0.035 Sum_probs=53.4
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 022131 6 IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85 (302)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (302)
...+...|++++|+++|+++.+.. +-+...+..+...+.. .++.++|++.++++... .|+...+..+
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~----------~~q~~eAl~~l~~l~~~--dp~~~~~l~l 175 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQAD----------AGRGGVVLKQATELAER--DPTVQNYMTL 175 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhh----------cCCHHHHHHHHHHhccc--CcchHHHHHH
Confidence 446777799999999999998873 2345566666666666 55556666666666554 3344444333
Q ss_pred HHHHHhcCCchhHHHHHHHHHhc
Q 022131 86 LHVYSRAHQPQLSLDKLNFMKEK 108 (302)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~ 108 (302)
+..+...++..+|++.++++.+.
T Consensus 176 ayL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 176 SYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHhcchHHHHHHHHHHHHHh
Confidence 33333334444466666665554
No 43
>PF13041 PPR_2: PPR repeat family
Probab=99.51 E-value=7.3e-14 Score=78.36 Aligned_cols=49 Identities=39% Similarity=0.754 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHh
Q 022131 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266 (302)
Q Consensus 218 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 266 (302)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666677777777777777777777777766677777777777766665
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=2.4e-10 Score=86.35 Aligned_cols=261 Identities=14% Similarity=0.145 Sum_probs=195.4
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCcccH------HHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIERGVEPNV------VTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 77 (302)
+|-+.|.+.|.+|+|+.+.+.+.++ ||. .....|..-|.. .|-++.|+.+|..+.+.+ .-
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~----------aGl~DRAE~~f~~L~de~-ef 139 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMA----------AGLLDRAEDIFNQLVDEG-EF 139 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHH----------hhhhhHHHHHHHHHhcch-hh
Confidence 4667788999999999999999876 332 223334444555 788999999999998864 22
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHH
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV----ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (302)
-......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+++.|..++.+..+.+. .....-.
T Consensus 140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~-~cvRAsi 218 (389)
T COG2956 140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADK-KCVRASI 218 (389)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc-cceehhh
Confidence 4567788999999999999999999999888655432 2355566666677899999999999988754 3555666
Q ss_pred HHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 022131 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233 (302)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 233 (302)
.+.+.....|+++.|.+.++.+.+.+. .--..+...|..+|...|+.++...++..+.+.. +....-..+...-...
T Consensus 219 ~lG~v~~~~g~y~~AV~~~e~v~eQn~-~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~ 295 (389)
T COG2956 219 ILGRVELAKGDYQKAVEALERVLEQNP-EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQ 295 (389)
T ss_pred hhhHHHHhccchHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHh
Confidence 677889999999999999999999863 3445677889999999999999999999988853 4444445555554455
Q ss_pred CCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhh---cchHHHHHHHHHhcccc
Q 022131 234 QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ---SDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 234 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 284 (302)
.-.+.|...+.+-..+ .|+...+..++..-.. .|...+-...++.|...
T Consensus 296 ~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 296 EGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred hChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 5566677766655553 6999999999987663 34455555566666543
No 45
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=1e-11 Score=93.90 Aligned_cols=230 Identities=16% Similarity=0.119 Sum_probs=169.8
Q ss_pred HHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHH
Q 022131 38 NVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117 (302)
Q Consensus 38 ~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 117 (302)
+.+-++|.+ .|.+.+|.+-|+..... .|-+.||-.|-+.|.+..++..|+.++.+-.+. .+.++...
T Consensus 227 ~Q~gkCylr----------Lgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l 293 (478)
T KOG1129|consen 227 QQMGKCYLR----------LGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYL 293 (478)
T ss_pred HHHHHHHHH----------hcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhh
Confidence 556667777 77777888888777766 567778888888888888888888888887765 23344444
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 022131 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197 (302)
Q Consensus 118 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (302)
.-+.+.+-..++.++|.++++...+... .+.....++...|.-.++++-|+++++++.+.| ..++..|+.+.-+|.-
T Consensus 294 ~g~ARi~eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--~~speLf~NigLCC~y 370 (478)
T KOG1129|consen 294 LGQARIHEAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMG--AQSPELFCNIGLCCLY 370 (478)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhc--CCChHHHhhHHHHHHh
Confidence 5666777777888888888888877633 466677777777888888888888888888888 4677788888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHH
Q 022131 198 LNRMDMVREIWNDVKGSGLGPD--LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWR 275 (302)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 275 (302)
.+++|.++.-|++....-..|+ ...|-.+-...+..||+..|.+.|+-....+ .-+...++.|.-.-.+.|++++|.
T Consensus 371 aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 371 AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHH
Confidence 8888888888888776544344 3456667777777888888888888776542 234567777777777888888888
Q ss_pred HHHHhcccc
Q 022131 276 RLKKKLDEE 284 (302)
Q Consensus 276 ~~~~~~~~~ 284 (302)
.+++.....
T Consensus 450 sll~~A~s~ 458 (478)
T KOG1129|consen 450 SLLNAAKSV 458 (478)
T ss_pred HHHHHhhhh
Confidence 887765543
No 46
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=6.3e-12 Score=94.97 Aligned_cols=212 Identities=12% Similarity=0.044 Sum_probs=177.6
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 157 (302)
|...-+-+.++|.+.|.+.+|.+.++..++. .|-+.||..|-+.|.+..++..|+.++.+-.+. .+.+.....-+.+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 4444577899999999999999999988876 456779999999999999999999999998876 3345555566778
Q ss_pred HHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 022131 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237 (302)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 237 (302)
.+-..++.+++.++++...+.. +.++.....+...|.-.++++.|...++++.+.|+. ++..|+.+.-+|.-.+++|
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 8999999999999999999886 678888888888899999999999999999999875 8899999999999999999
Q ss_pred HHHHHHHHHHHCCCCCch--hhHHHHHHHHhhcchHHHHHHHHHhccccCCCcccchhhh
Q 022131 238 EACQYFVEMIEKGLLPQK--VTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295 (302)
Q Consensus 238 ~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 295 (302)
.++.-|++....--.|+. .+|-.+-......|++.-|.+.|+......-.-+..+.+.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNL 435 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNL 435 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhH
Confidence 999999999876444543 5677788888899999999999887766655544444443
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=9e-11 Score=92.69 Aligned_cols=222 Identities=11% Similarity=0.044 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCC--cCHHHHHHHH-------------
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC--PTVATYSSVV------------- 121 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll------------- 121 (302)
....+++..-.+...+.|++-+...-+....+.....|+++|+.+|+++.+..+- -|..+|..++
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 3466777777778888887766666666666677788999999999999887421 1444554433
Q ss_pred ------------------HHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCC
Q 022131 122 ------------------KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183 (302)
Q Consensus 122 ------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 183 (302)
+-|+-.++.++|...|++..+.+. .....|+.+..-|....+...|.+-++...+-+ +.
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--p~ 396 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--PR 396 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--ch
Confidence 234556788999999999998754 467889999999999999999999999999986 88
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHH
Q 022131 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263 (302)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 263 (302)
|-..|-.|.++|.-.+...-|+-.|++.... -+-|...|..|..+|.+.++.++|++.|......|- .+...+..|.+
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~Lak 474 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAK 474 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHH
Confidence 9999999999999999999999999999886 345889999999999999999999999999988753 36688999999
Q ss_pred HHhhcchHHHHHHHHHhccc
Q 022131 264 GLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 264 ~~~~~g~~~~a~~~~~~~~~ 283 (302)
.+.+.++.++|.+.+++-.+
T Consensus 475 Lye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999887655
No 48
>PF13041 PPR_2: PPR repeat family
Probab=99.47 E-value=1.8e-13 Score=76.72 Aligned_cols=49 Identities=31% Similarity=0.589 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHh
Q 022131 77 PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC 125 (302)
Q Consensus 77 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 125 (302)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 49
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.41 E-value=6.7e-10 Score=80.15 Aligned_cols=199 Identities=11% Similarity=-0.022 Sum_probs=169.7
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (302)
+...|.-.|...|+...|..-+++.+++.. .+..+|..+...|.+.|+.+.|.+.|++...... -+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 455677789999999999999999999863 3677899999999999999999999999998744 46788888999999
Q ss_pred ccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 022131 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240 (302)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 240 (302)
..|++++|...|++.........-..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+.-.+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999999886544456789999999999999999999999998863 334567778888899999999999
Q ss_pred HHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccc
Q 022131 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 241 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
.+++.....+. ++..+....|+.-...|+.+.+-++-.++..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999877654 8888888889999999999888887666544
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=2.1e-09 Score=83.62 Aligned_cols=189 Identities=13% Similarity=0.064 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCC
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDV-------TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 129 (302)
.|++.....++..+.+.+.-.+. .+|+.+++-....+..+.-...++...++ .+-++..-.+++.-+.++|+
T Consensus 200 ~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~ 278 (400)
T COG3071 200 LGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGD 278 (400)
T ss_pred hccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCC
Confidence 44455555555555544433222 23444444444444434433344443322 12244555666777788888
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022131 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209 (302)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (302)
.++|.++..+..+.+..|+ -...-.+.+-++...-.+..++..+.. +.++..+.+|...|.+.+.|.+|...|+
T Consensus 279 ~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h--~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 279 HDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH--PEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred hHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8999888888888766554 222334567777777777777776665 4566788999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCc
Q 022131 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254 (302)
Q Consensus 210 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 254 (302)
...+. .|+..+|+.+..++.+.|+..+|.++.++....-..|+
T Consensus 353 aAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 353 AALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 87774 79999999999999999999999999998764433343
No 51
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.40 E-value=3.1e-10 Score=93.66 Aligned_cols=240 Identities=16% Similarity=0.107 Sum_probs=176.5
Q ss_pred cHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc-----C-CCCCH-HHHHHHHHHHHhcCCchhHHHHHHHH
Q 022131 33 NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR-----G-IEPDV-TSFSIVLHVYSRAHQPQLSLDKLNFM 105 (302)
Q Consensus 33 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~ 105 (302)
-..+...+...|.. .|+++.|+.+++...+. | ..|.. ...+.+...|...+++++|..+|+++
T Consensus 198 ~~~~~~~La~~y~~----------~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A 267 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAV----------QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEA 267 (508)
T ss_pred HHHHHHHHHHHHHH----------hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34566667888888 88889999888887664 2 12333 34455778899999999999999998
Q ss_pred Hhc-----C--CCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-----CC-CCC-hhhHHHHHHHHHccCCchHHHHH
Q 022131 106 KEK-----G--ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN-----GV-CPS-AETYNCFFKEYRGRKDANGAMKL 171 (302)
Q Consensus 106 ~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~ 171 (302)
... | .+.-..+++.|..+|.+.|++++|...+++..+. |. .|. ...++.+...|...+++++|..+
T Consensus 268 L~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l 347 (508)
T KOG1840|consen 268 LTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKL 347 (508)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 654 2 1223456788888999999999999888876542 11 122 23456677788999999999999
Q ss_pred HHHHHhCCC--CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C---CCCCHHHHHHHHHHHHHcCCHHH
Q 022131 172 YRQMKEDGL--CVP----NMHSYNILIGMFMALNRMDMVREIWNDVKGS----G---LGPDLDSYTMLIHGLCEKQKWKE 238 (302)
Q Consensus 172 ~~~~~~~~~--~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~~~li~~~~~~g~~~~ 238 (302)
++...+.-. ..+ -..+++.+...|...|++++|.++++++... + ..-....++.+...|.+.+++.+
T Consensus 348 ~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~ 427 (508)
T KOG1840|consen 348 LQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE 427 (508)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence 887654311 112 2457899999999999999999999987753 1 12234677889999999999999
Q ss_pred HHHHHHHHHHC--CCCCc----hhhHHHHHHHHhhcchHHHHHHHHHhcc
Q 022131 239 ACQYFVEMIEK--GLLPQ----KVTFETLYRGLIQSDMLRTWRRLKKKLD 282 (302)
Q Consensus 239 a~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (302)
|.++|.+...- -+.|+ ..+|..|...|...|+++.|.++.+...
T Consensus 428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99999876432 12232 3678999999999999999999987755
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=1.7e-10 Score=94.99 Aligned_cols=230 Identities=12% Similarity=0.030 Sum_probs=188.3
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCC---C------------------------------cccHHHHHHHHHHHHhcccC
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIERG---V------------------------------EPNVVTYNVLLNGVCRRASL 50 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~---~------------------------------~~~~~~~~~ll~~~~~~~~~ 50 (302)
-+-.+|...+++++|+.+|+.+.+.. + +-.+.+|-++-.+|.-
T Consensus 358 q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL---- 433 (638)
T KOG1126|consen 358 QLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL---- 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh----
Confidence 35577888899999999999887641 0 1134455555555555
Q ss_pred CcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCH
Q 022131 51 HPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130 (302)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 130 (302)
+++.+.|++.|++..+.+ +....+|+.+.+-+....++|.|...|+..+..... +-..|--+.-.|.+.+++
T Consensus 434 ------Qkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 434 ------QKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKL 505 (638)
T ss_pred ------hhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccchh
Confidence 899999999999999874 227889999999999999999999999998876432 555677788889999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022131 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210 (302)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (302)
+.|+-.|++..+.++ -+.+....+...+.+.|+.++|++++++..... +.|+..--.-+..+...++.++|...+++
T Consensus 506 e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn~l~~~~~~~il~~~~~~~eal~~LEe 582 (638)
T KOG1126|consen 506 EFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKNPLCKYHRASILFSLGRYVEALQELEE 582 (638)
T ss_pred hHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCCchhHHHHHHHHHhhcchHHHHHHHHH
Confidence 999999999998764 467777888889999999999999999999886 56666666667778889999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 022131 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 211 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 249 (302)
+++. ++-+...|..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 583 Lk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 583 LKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 9986 4445677888889999999999999999988764
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.38 E-value=4.8e-10 Score=92.53 Aligned_cols=235 Identities=16% Similarity=0.138 Sum_probs=171.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhC-----C-CcccHH-HHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc--
Q 022131 3 TSLIYGWCKINRIDMAERFLGEMIER-----G-VEPNVV-TYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR-- 73 (302)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-- 73 (302)
..+...|...|++++|+.++++..+. | ..|... ..+.+...|.. .+++.+|..+|+++.+.
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~----------~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS----------LGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH----------hccHHHHHHHHHHHHHHHH
Confidence 34778899999999999999998765 2 123333 23335556666 77778888888777652
Q ss_pred ---C--CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhc-----CC-CcCHH-HHHHHHHHHhccCCHHHHHHHHHHHH
Q 022131 74 ---G--IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK-----GI-CPTVA-TYSSVVKCLCSCGRIEDAEELLGEMV 141 (302)
Q Consensus 74 ---~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~ 141 (302)
| .+.-..+++.|..+|.+.|++++|...++...+. |. .|... .++.+...+...+++++|..++++..
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 2 1222457888888999999999998888776432 21 22222 36677788889999999999998765
Q ss_pred HC---CCCC----ChhhHHHHHHHHHccCCchHHHHHHHHHHhCC----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 022131 142 RN---GVCP----SAETYNCFFKEYRGRKDANGAMKLYRQMKEDG----L--CVPNMHSYNILIGMFMALNRMDMVREIW 208 (302)
Q Consensus 142 ~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (302)
+. -+.+ -..+++.|...|...|++++|.++++++.... . ..-....++.+...|.+.++..+|.++|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 43 1222 24688999999999999999999999886432 1 1222456788889999999999999998
Q ss_pred HHHHh----CC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022131 209 NDVKG----SG--LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247 (302)
Q Consensus 209 ~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 247 (302)
.+... .| .+-...+|..|...|...|++++|.++.+...
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 87443 22 22235789999999999999999999998875
No 54
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.38 E-value=5.1e-09 Score=89.27 Aligned_cols=187 Identities=12% Similarity=0.027 Sum_probs=109.3
Q ss_pred HhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 022131 10 CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89 (302)
Q Consensus 10 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 89 (302)
...|++++|..++.+..+.. +.+...|..|-..|-. .|+.+++...+--....+ +.|...|..+....
T Consensus 150 farg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEq----------rGd~eK~l~~~llAAHL~-p~d~e~W~~ladls 217 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQ----------RGDIEKALNFWLLAAHLN-PKDYELWKRLADLS 217 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHH----------cccHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 34499999999999998873 5577789999999988 666666666555444443 33556777777777
Q ss_pred HhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHccCCc
Q 022131 90 SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE----TYNCFFKEYRGRKDA 165 (302)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~ 165 (302)
.+.|+++.|.-.|.+..+.. +++...+-.-...|-+.|+...|...|.++.+...+.|.. ..-.+++.+...++-
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 77777777777777776664 3344444455666667777777777777766653311211 112223344444544
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022131 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209 (302)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (302)
+.|.+.+......+....+...++.++..+.+...++.|.....
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~ 340 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIV 340 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHH
Confidence 55555555554422112333334444444444444444444333
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=4e-11 Score=101.57 Aligned_cols=239 Identities=16% Similarity=0.189 Sum_probs=162.1
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 022131 1 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80 (302)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (302)
||.++|.-||..|+.+.|- +|..|.-...+.+...++.++.+....+ +.+.+. .|.+.
T Consensus 27 tyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~An----------d~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 27 TYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAN----------DAENPK-----------EPLAD 84 (1088)
T ss_pred hHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccc----------cccCCC-----------CCchh
Confidence 6899999999999999999 9999988888888899999998888843 333332 67899
Q ss_pred HHHHHHHHHHhcCCchh---HHHHHHHH----HhcCCCcCHHHHHHHHHHH--------------hccCCHHHHHHHHHH
Q 022131 81 SFSIVLHVYSRAHQPQL---SLDKLNFM----KEKGICPTVATYSSVVKCL--------------CSCGRIEDAEELLGE 139 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~---a~~~~~~~----~~~~~~~~~~~~~~ll~~~--------------~~~~~~~~a~~~~~~ 139 (302)
+|..|+.+|...||... +.+.+..+ ...|+-.....+-..+.++ .-.|-++.+.+++..
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999754 22222222 2233321122221222221 112222333333222
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 022131 140 MVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219 (302)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (302)
+..... + .++..+++-+.... .-..++......... .|+..++..++.+....|+.+.|..++.+|.+.|++.+
T Consensus 165 ~Pvsa~--~-~p~~vfLrqnv~~n--tpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 165 VPVSAW--N-APFQVFLRQNVVDN--TPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred CCcccc--c-chHHHHHHHhccCC--chHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 211100 0 01111233333322 223333333333222 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcch
Q 022131 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270 (302)
Q Consensus 220 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 270 (302)
.+-|..|+-+ .++..-+..+++.|.+.|+.|+..|+...+..+...|.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9988888877 88888899999999999999999999998888877554
No 56
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.36 E-value=5.8e-10 Score=95.56 Aligned_cols=270 Identities=12% Similarity=0.083 Sum_probs=202.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhC---CCcccHH------HHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc
Q 022131 3 TSLIYGWCKINRIDMAERFLGEMIER---GVEPNVV------TYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73 (302)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~------~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 73 (302)
|.+.......|++.+|...|...... ...++.. +--.+....-. .++.+.|.+.|..+...
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~----------l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE----------LHDTEVAEEMYKSILKE 525 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh----------hhhhhHHHHHHHHHHHH
Confidence 56677788899999999999998765 2223331 11122222333 67889999999999886
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCChhh
Q 022131 74 GIEPD-VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG-VCPSAET 151 (302)
Q Consensus 74 ~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~ 151 (302)
-|. +..|-.++......+...+|...+....+.+ ..++..++.+...+.+...+..|..-|+...+.- ..+|+.+
T Consensus 526 --hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ys 602 (1018)
T KOG2002|consen 526 --HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYS 602 (1018)
T ss_pred --CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhH
Confidence 333 4455555544455678889999999988765 3477778888889999999988988777766542 2256666
Q ss_pred HHHHHHHHHc------------cCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 022131 152 YNCFFKEYRG------------RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219 (302)
Q Consensus 152 ~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (302)
...|...|.. .+..++|+++|.+..+.. +.|...-|-+.-.++..|++..|..+|.++.+.. .-.
T Consensus 603 liaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~ 679 (1018)
T KOG2002|consen 603 LIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDF 679 (1018)
T ss_pred HHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhC
Confidence 6666665532 235578999999999887 7788888888888999999999999999999863 345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccCCCc
Q 022131 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEK-GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288 (302)
Q Consensus 220 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 288 (302)
..+|-.+..+|+..|++..|+++|+...+. .-.-+..+...|.+++.+.|.+.+|.+.+.........-
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc
Confidence 678889999999999999999999988765 334467788999999999999999999877765544443
No 57
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=1e-08 Score=85.66 Aligned_cols=255 Identities=12% Similarity=0.057 Sum_probs=147.4
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 022131 7 YGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86 (302)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (302)
..+...|++++|++.++.-... +.............+.+ .|+.++|..+|..+.+++ +.|..-|..+.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~k----------Lg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~ 79 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLK----------LGRKEEAEKIYRELIDRN-PDNYDYYRGLE 79 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHC-CCcHHHHHHHH
Confidence 3456778888888888665443 33233444555556666 677788888888888774 22444444444
Q ss_pred HHHHhcC-----CchhHHHHHHHHH----------------------------------hcCCCcCHHHHHHHHHHHhcc
Q 022131 87 HVYSRAH-----QPQLSLDKLNFMK----------------------------------EKGICPTVATYSSVVKCLCSC 127 (302)
Q Consensus 87 ~~~~~~~-----~~~~a~~~~~~~~----------------------------------~~~~~~~~~~~~~ll~~~~~~ 127 (302)
.+..... +.+....+++++. ..|+|+ +|+.+-..|...
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~ 156 (517)
T PF12569_consen 80 EALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDP 156 (517)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcCh
Confidence 4442221 2344455555543 333321 344444444444
Q ss_pred CCHHHHHHHHHHHHHC----C----------CCCCh--hhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHH
Q 022131 128 GRIEDAEELLGEMVRN----G----------VCPSA--ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNIL 191 (302)
Q Consensus 128 ~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 191 (302)
....-...++...... + -+|+. +++..+.+.|...|++++|+.++++..+.. +-.+..|..-
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~K 234 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTK 234 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHH
Confidence 4444444444444322 1 12333 344555666777788888888888777763 3336667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhh------H--HHHHH
Q 022131 192 IGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT------F--ETLYR 263 (302)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~------~--~~l~~ 263 (302)
...+-+.|++.+|.+.++....... -|...-+..+..+.++|+.++|.+++....+.+..|-... | .....
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~ 313 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE 313 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence 7777778888888888877777532 3555556666777778888888887777765554332211 1 22346
Q ss_pred HHhhcchHHHHHHHHH
Q 022131 264 GLIQSDMLRTWRRLKK 279 (302)
Q Consensus 264 ~~~~~g~~~~a~~~~~ 279 (302)
+|.+.|++..|.+.+.
T Consensus 314 a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 314 AYLRQGDYGLALKRFH 329 (517)
T ss_pred HHHHHhhHHHHHHHHH
Confidence 6777777666655443
No 58
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.34 E-value=1.4e-08 Score=86.67 Aligned_cols=267 Identities=11% Similarity=0.045 Sum_probs=190.5
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
|.+|-..|-..|+.+++...+-..-.. .+-|...|..+-.-..+ .+.+++|.-.|.+..+.. +++...
T Consensus 176 y~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~----------~~~i~qA~~cy~rAI~~~-p~n~~~ 243 (895)
T KOG2076|consen 176 YYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQ----------LGNINQARYCYSRAIQAN-PSNWEL 243 (895)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHh----------cccHHHHHHHHHHHHhcC-CcchHH
Confidence 678888999999999999888665554 34567888888887777 788899999999988875 446666
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHH----HHHHHhccCCHHHHHHHHHHHHHC-CCCCChhhHHHHH
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS----VVKCLCSCGRIEDAEELLGEMVRN-GVCPSAETYNCFF 156 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~ 156 (302)
+-.-...|-+.|+...|...|.++.+...+.|..-+.. ++..+...++-+.|.+.++..... +-..+...++.++
T Consensus 244 ~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~a 323 (895)
T KOG2076|consen 244 IYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILA 323 (895)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHH
Confidence 66667788888999999999998888754333333333 344455666667777777766552 2234555666666
Q ss_pred HHHHccCCchHHHHHHHHHHh-----------------------------------------------------------
Q 022131 157 KEYRGRKDANGAMKLYRQMKE----------------------------------------------------------- 177 (302)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~----------------------------------------------------------- 177 (302)
..+.+...++.+.........
T Consensus 324 el~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l 403 (895)
T KOG2076|consen 324 ELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFL 403 (895)
T ss_pred HHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHH
Confidence 777776666666666555544
Q ss_pred --CCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-
Q 022131 178 --DGL-CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP- 253 (302)
Q Consensus 178 --~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p- 253 (302)
... +.-+...|.-+..++...|++.+|..++..+......-+...|-.+..+|...|..++|.+.|...+.. .|
T Consensus 404 ~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~ 481 (895)
T KOG2076|consen 404 VEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APD 481 (895)
T ss_pred HHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCC
Confidence 110 011233456677888888888889888888887655556778888888888889999999998888764 34
Q ss_pred chhhHHHHHHHHhhcchHHHHHHHHHhcc
Q 022131 254 QKVTFETLYRGLIQSDMLRTWRRLKKKLD 282 (302)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (302)
+...-..|...+.+.|+.++|.+.+..+.
T Consensus 482 ~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 482 NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 33455556667788888898888888765
No 59
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.32 E-value=5.8e-09 Score=82.26 Aligned_cols=225 Identities=11% Similarity=0.020 Sum_probs=129.1
Q ss_pred cchHHHHHHHHHhCC-Cccc--HHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 022131 15 IDMAERFLGEMIERG-VEPN--VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91 (302)
Q Consensus 15 ~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (302)
.+.++.-+.+++... ..|+ ...|..+-..+.. .|+.++|...|++..+.. +.+...|+.+...+..
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~----------~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~ 110 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDS----------LGLRALARNDFSQALALR-PDMADAYNYLGIYLTQ 110 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 345556666665431 1222 2345555555555 666777777777777764 3356777777778888
Q ss_pred cCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHH
Q 022131 92 AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171 (302)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 171 (302)
.|+++.|...|+...+.... +..++..+..++...|++++|.+.|++..+.. |+..........+...++.++|...
T Consensus 111 ~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHH
Confidence 88888888888877766422 45667777777777788888888888777653 3322222222233456677777777
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 022131 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS---GL---GPDLDSYTMLIHGLCEKQKWKEACQYFVE 245 (302)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 245 (302)
+.+..... .|+...+ .+. ....|+...+ +.+..+.+. .. +.....|..+...+.+.|++++|...|++
T Consensus 188 l~~~~~~~--~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 188 LKQRYEKL--DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred HHHHHhhC--CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 76554332 2222111 222 2234444433 233333321 00 01234677777777788888888888887
Q ss_pred HHHCCCCCchhhHHH
Q 022131 246 MIEKGLLPQKVTFET 260 (302)
Q Consensus 246 ~~~~~~~p~~~~~~~ 260 (302)
..+.+ +||..-+..
T Consensus 262 Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 262 ALANN-VYNFVEHRY 275 (296)
T ss_pred HHHhC-CchHHHHHH
Confidence 77643 234444433
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.31 E-value=9.3e-09 Score=74.39 Aligned_cols=209 Identities=12% Similarity=0.052 Sum_probs=175.6
Q ss_pred HHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHH
Q 022131 36 TYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA 115 (302)
Q Consensus 36 ~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 115 (302)
+...+.-.|.+ .|+...|..-+++..+.+ +.+..+|..+...|.+.|+.+.|.+-|++..+.... +..
T Consensus 37 arlqLal~YL~----------~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~Gd 104 (250)
T COG3063 37 ARLQLALGYLQ----------QGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGD 104 (250)
T ss_pred HHHHHHHHHHH----------CCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccc
Confidence 34455556777 788899999999999985 346789999999999999999999999999988643 778
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 022131 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGV-CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194 (302)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (302)
+.|.....+|..|++++|...|++....-. .-...+|..+.-+..+.|+++.+...|++..+.. +....+...+...
T Consensus 105 VLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~ 182 (250)
T COG3063 105 VLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARL 182 (250)
T ss_pred hhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHH
Confidence 899999999999999999999999987621 1235688888888899999999999999999986 5566778889999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHH
Q 022131 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261 (302)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 261 (302)
....|++-.|...++.....+. ++..+.-..|+.--..|+.+.+-++=..+.+. -|...-+..+
T Consensus 183 ~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~f 246 (250)
T COG3063 183 HYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQTF 246 (250)
T ss_pred HHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHhH
Confidence 9999999999999999988865 89999988999999999999988887777653 5666555443
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.4e-09 Score=86.71 Aligned_cols=153 Identities=9% Similarity=0.039 Sum_probs=96.3
Q ss_pred hcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHH
Q 022131 91 RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMK 170 (302)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (302)
-.|+.-.|..-|+........+ ...|-.+..+|....+.++....|+...+.+. -++.+|..-.+.+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHH
Confidence 3567777777777777765332 22366666667777777777777777776543 355566666666666666666666
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
=|++..... +.+...|..+..+..+.++++++...|++.+++ ++-.+..|+.....+...++++.|.+.|+..++
T Consensus 416 DF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 416 DFQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 666666654 445555555555555666666666666666655 445556666666666666666666666665544
No 62
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.31 E-value=2.4e-08 Score=82.67 Aligned_cols=266 Identities=11% Similarity=-0.020 Sum_probs=213.6
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 022131 1 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80 (302)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (302)
||+.--+.|.+.+.++-|..+|...++. .+-+...|......=-. .|..+....+|++....- +-...
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~----------hgt~Esl~Allqkav~~~-pkae~ 585 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKS----------HGTRESLEALLQKAVEQC-PKAEI 585 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHh----------cCcHHHHHHHHHHHHHhC-Ccchh
Confidence 3556667788888888888888888776 34455666666544444 677788889999998873 33455
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (302)
.|-...+.+...|+...|..++....+.... +...|.+-+..-..+..++.|..+|.+.... .|+...|.--+..--
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLER 662 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHH
Confidence 6677778888899999999999999988644 7889999999999999999999999998874 578888888777777
Q ss_pred ccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 022131 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240 (302)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 240 (302)
-.++.++|.+++++..+.- +.-...|..+.+.+-+.++.+.|.+.|..-.+. ++-.+..|-.+...=-+.|++-.|.
T Consensus 663 ~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred HhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHH
Confidence 8899999999999999884 444667888888999999999999999877665 5556677888877778889999999
Q ss_pred HHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccC
Q 022131 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 241 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (302)
.++++.+-++ +-+...|...|+.-.+.|..+.|..+..+..+..
T Consensus 740 ~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 740 SILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred HHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999987653 4467788899999999999999998877655543
No 63
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.30 E-value=3.8e-09 Score=83.27 Aligned_cols=221 Identities=9% Similarity=-0.062 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHHHhcC-CCCC--HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRG-IEPD--VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 133 (302)
....+.++.-+.++.... ..|+ ...|..+...+...|+.+.|...|++..+... .+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 455677788888887643 1222 45688888899999999999999999998763 3788999999999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022131 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
...|++..+... -+..+|..+..++...|++++|.+.++...+.. +.+. ........+...++.++|.+.+.+...
T Consensus 118 ~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDP-YRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCH-HHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999998643 356778888888999999999999999999874 3333 222222234467889999999977654
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---C--CCC-chhhHHHHHHHHhhcchHHHHHHHHHhccccCCC
Q 022131 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK---G--LLP-QKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287 (302)
Q Consensus 214 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~--~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 287 (302)
. ..|+...+ .+ .....|+...+ +.+..+.+. . +.| ....|..+...+...|++++|...+++..+..++
T Consensus 194 ~-~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 194 K-LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred h-CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 3 23332222 22 22345555444 344444422 1 111 2357888999999999999999999998877653
No 64
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=4.8e-09 Score=83.24 Aligned_cols=207 Identities=14% Similarity=0.158 Sum_probs=166.1
Q ss_pred hcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 022131 11 KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90 (302)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (302)
.+|++++|.+.|.+.+...-.-....||.=+. +-. .+++++|+..|-.+... +..+..+.-.+...|-
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt-~e~----------~~~ldeald~f~klh~i-l~nn~evl~qianiye 569 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLT-AEA----------LGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYE 569 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhccc-HHH----------hcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHH
Confidence 36889999999999987733323333443332 333 78889999999887653 2337788888899999
Q ss_pred hcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHH
Q 022131 91 RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMK 170 (302)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (302)
...++..|++++.+.... ++-|+.....|...|-+.|+-.+|++.+-+--+. ++.+..+...+...|....-+++++.
T Consensus 570 ~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~ 647 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAIN 647 (840)
T ss_pred HhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999888765 5668899999999999999999999887665443 55688888888888999999999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 022131 171 LYRQMKEDGLCVPNMHSYNILIGMFM-ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235 (302)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 235 (302)
.|++..-. .|+..-|..++..|. +.|++.+|.++++....+ ++-|......|++.+...|-
T Consensus 648 y~ekaali---qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 648 YFEKAALI---QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhc---CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99987665 799999988876555 679999999999998876 78899999999998877763
No 65
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.24 E-value=4.8e-08 Score=84.23 Aligned_cols=265 Identities=8% Similarity=0.019 Sum_probs=188.4
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 022131 7 YGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86 (302)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (302)
.++.+.|+.+.|+..|...++. .| ....+++....-.-.+.. ...+..+..++......+ +-|+...+.|.
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqL--dp--~~v~alv~L~~~~l~~~d----~~s~~~~~~ll~~ay~~n-~~nP~~l~~LA 277 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQL--DP--TCVSALVALGEVDLNFND----SDSYKKGVQLLQRAYKEN-NENPVALNHLA 277 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhc--Ch--hhHHHHHHHHHHHHHccc----hHHHHHHHHHHHHHHhhc-CCCcHHHHHHH
Confidence 3445666777777777776665 22 222222221111001111 445667777777776654 44788889999
Q ss_pred HHHHhcCCchhHHHHHHHHHhcCCC--cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 022131 87 HVYSRAHQPQLSLDKLNFMKEKGIC--PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164 (302)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (302)
..|.-.|+++.+..+...+...... .-...|-.+.++|-..|++++|...|.+..+.......-.+.-+.+.+...|+
T Consensus 278 n~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d 357 (1018)
T KOG2002|consen 278 NHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD 357 (1018)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch
Confidence 9999999999999999888765311 12345778899999999999999999998876432224556678889999999
Q ss_pred chHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 022131 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN----RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240 (302)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 240 (302)
.+.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+.... .+.|...|-.+...+-.. +...++
T Consensus 358 le~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~-d~~~sL 433 (1018)
T KOG2002|consen 358 LEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQT-DPWASL 433 (1018)
T ss_pred HHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhc-ChHHHH
Confidence 999999999999885 667788888888887775 457777777777765 355777887777766554 444447
Q ss_pred HHHHHHH----HCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhcccc
Q 022131 241 QYFVEMI----EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 241 ~~~~~~~----~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (302)
.+|..+. ..+-.+.+...+.+.......|++++|...++.....
T Consensus 434 ~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 434 DAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 7776554 4455678889999999999999999999999876654
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-08 Score=82.32 Aligned_cols=258 Identities=9% Similarity=-0.060 Sum_probs=169.1
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 022131 7 YGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86 (302)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (302)
.-+...+++.+..++.+...+. .++....+..-|.++.. .++..+-..+=.++.+. .+..+.+|-++.
T Consensus 252 d~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~e----------l~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYE----------LGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHH----------hcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 3455678899999999988876 46677777777777777 34434444444455544 344567888888
Q ss_pred HHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCch
Q 022131 87 HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166 (302)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 166 (302)
-.|.-.|+..+|.+.|.+....+.. =...|-.....|+-.|..++|...+...-+. ++...-.+--+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHH
Confidence 8888888888888888887665422 2446777778888888888888777766553 1111112222333466677777
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC---C-CCHHHHHHHHHHHHHcCCHHHHH
Q 022131 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS--GL---G-PDLDSYTMLIHGLCEKQKWKEAC 240 (302)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~---~-~~~~~~~~li~~~~~~g~~~~a~ 240 (302)
.|.++|.+..... +.|+...+-+.-.....+.+.+|...|+..... .. . .-..+++.|..+|.+.+.+++|+
T Consensus 398 LAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 7777777776654 566666666666666667777777777765521 00 0 13345667777777777777777
Q ss_pred HHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhc
Q 022131 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281 (302)
Q Consensus 241 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 281 (302)
..+++.... .+-|..++.++.-.+...|+++.|.+.|.+.
T Consensus 476 ~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 476 DYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 777777654 2346667777777777777777777776653
No 67
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.23 E-value=1e-07 Score=79.06 Aligned_cols=265 Identities=11% Similarity=0.034 Sum_probs=190.2
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 022131 8 GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 87 (302)
Q Consensus 8 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (302)
.+-..|++..|..++....+.. +-+...|-.-+..-.. ...++.|..+|.+.... .|+..+|.--++
T Consensus 593 e~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~e----------n~e~eraR~llakar~~--sgTeRv~mKs~~ 659 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFE----------NDELERARDLLAKARSI--SGTERVWMKSAN 659 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhc----------cccHHHHHHHHHHHhcc--CCcchhhHHHhH
Confidence 3445577777777777666552 2245566666665555 66777787777777654 566666666666
Q ss_pred HHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchH
Q 022131 88 VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG 167 (302)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 167 (302)
.-.-.++.++|.+++++.++. ++--...|..+.+.+-+.++++.|...|..-.+. .+..+..|..+.+.--+.|+.-.
T Consensus 660 ~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhh
Confidence 666677778888888777765 2323445667777777777777777777665554 33456677777777778888888
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-------------------------CCC
Q 022131 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS----G-------------------------LGP 218 (302)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-------------------------~~~ 218 (302)
|..+++.....+ +.+...|...|++=.+.|+.+.|..+..+..+. | ...
T Consensus 738 AR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~ 815 (913)
T KOG0495|consen 738 ARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH 815 (913)
T ss_pred HHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccC
Confidence 999998888776 778888999999999999999988887766543 1 123
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccCCCccc
Q 022131 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290 (302)
Q Consensus 219 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 290 (302)
|.+..-.+...+....++++|.+.|.+.++.+ +-+..+|..+...+.+.|.-++-.+++++......+.+.
T Consensus 816 dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~ 886 (913)
T KOG0495|consen 816 DPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGE 886 (913)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Confidence 56667777778888889999999999988753 224578888899999999888888888887776655544
No 68
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.20 E-value=1.4e-09 Score=84.63 Aligned_cols=251 Identities=12% Similarity=0.069 Sum_probs=162.9
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 022131 7 YGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86 (302)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (302)
+-+.-.|++..++.-.+ ......+.+......+.+++.. .|+.+. +..++.... .|.......+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iA----------lg~~~~---vl~ei~~~~-~~~l~av~~la 73 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIA----------LGQYDS---VLSEIKKSS-SPELQAVRLLA 73 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHH----------TT-HHH---HHHHS-TTS-SCCCHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHH----------cCChhH---HHHHhccCC-ChhHHHHHHHH
Confidence 34445688888886665 3232223344455566666666 555443 334444433 66777766665
Q ss_pred HHHHhcCCchhHHHHHHHHHhcCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCc
Q 022131 87 HVYSRAHQPQLSLDKLNFMKEKGICP-TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165 (302)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 165 (302)
..+...++-+.+..-+++.......+ +..........+...|++++|++++... .+.......+..+.+.+++
T Consensus 74 ~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~ 147 (290)
T PF04733_consen 74 EYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRP 147 (290)
T ss_dssp HHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-H
T ss_pred HHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCH
Confidence 55544344455555554443333232 3333333445677789999998887643 3667777888999999999
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 022131 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA----LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241 (302)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 241 (302)
+.|.+.++.|.+.+ .| .+...+..++.. ...+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+
T Consensus 148 dlA~k~l~~~~~~~---eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~ 222 (290)
T PF04733_consen 148 DLAEKELKNMQQID---ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEE 222 (290)
T ss_dssp HHHHHHHHHHHCCS---CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHhcC---Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999998763 33 445555555553 33689999999998776 66888999999999999999999999
Q ss_pred HHHHHHHCCCCCchhhHHHHHHHHhhcchH-HHHHHHHHhcccc
Q 022131 242 YFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKKKLDEE 284 (302)
Q Consensus 242 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 284 (302)
++.+..+.+ +-++.++..++-+....|+. +.+.+++.++...
T Consensus 223 ~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 223 LLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999886543 33667778888888888887 7788888888764
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.6e-08 Score=80.91 Aligned_cols=219 Identities=12% Similarity=0.057 Sum_probs=143.3
Q ss_pred hcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 022131 11 KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90 (302)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (302)
-.|+.-.|.+-|+........+ +..|--+...|.. ..+-++..+.|+...+.+. -|+.+|..-.....
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d----------~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYAD----------ENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRF 405 (606)
T ss_pred hcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhh----------hhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHH
Confidence 3567777777777777663222 2225555556666 6666777777777776653 35666776677777
Q ss_pred hcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHH
Q 022131 91 RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMK 170 (302)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (302)
-.++++.|..=|++..+.... +...|-.+.-+..|.+.++++...|++.++. ++..+..|+.....+...++++.|.+
T Consensus 406 lL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 777788888888877776422 5555666666666777888888888887766 44456777777788888888888888
Q ss_pred HHHHHHhCCCCCCC-------HHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 022131 171 LYRQMKEDGLCVPN-------MHSY--NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241 (302)
Q Consensus 171 ~~~~~~~~~~~~~~-------~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 241 (302)
.|+...+.. |+ ...+ -.++ .+--.+++..|..++++..+.. +-....|..|...-.+.|+.++|++
T Consensus 484 ~YD~ai~LE---~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 484 QYDKAIELE---PREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred HHHHHHhhc---cccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHH
Confidence 887776652 22 1111 1111 1113377778888888777652 2244567777777778888888888
Q ss_pred HHHHHHH
Q 022131 242 YFVEMIE 248 (302)
Q Consensus 242 ~~~~~~~ 248 (302)
+|++...
T Consensus 559 lFEksa~ 565 (606)
T KOG0547|consen 559 LFEKSAQ 565 (606)
T ss_pred HHHHHHH
Confidence 8876543
No 70
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.17 E-value=9.2e-08 Score=85.49 Aligned_cols=236 Identities=10% Similarity=0.057 Sum_probs=187.8
Q ss_pred cccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCchhHHHHHHHH
Q 022131 31 EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP-----DVTSFSIVLHVYSRAHQPQLSLDKLNFM 105 (302)
Q Consensus 31 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 105 (302)
|-+...|-..|....+ ..+++.|.+++++.... +.+ -...|.++++.-...|.-+...++|+++
T Consensus 1455 PNSSi~WI~YMaf~Le----------lsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLE----------LSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred CCcchHHHHHHHHHhh----------hhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 4456788899988888 88999999999998864 222 2346777887777788888999999999
Q ss_pred HhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCH
Q 022131 106 KEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185 (302)
Q Consensus 106 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 185 (302)
.+.. -....|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.++++-+.|..++.+..+.--..-..
T Consensus 1524 cqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1524 CQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 8873 23456889999999999999999999999976 33577899999999999999999999999998873101134
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCch--hhHHHHHH
Q 022131 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK--VTFETLYR 263 (302)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~ 263 (302)
......++.-.+.|+.+.++.+|+..... .+-....|+..|+.-.++|+.+.+..+|++.+..++.|-. ..|...+.
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 45556666777899999999999998876 4457789999999999999999999999999999887754 45666666
Q ss_pred HHhhcchHHHHHHHHHhc
Q 022131 264 GLIQSDMLRTWRRLKKKL 281 (302)
Q Consensus 264 ~~~~~g~~~~a~~~~~~~ 281 (302)
.=...|+-+.++.+-.+.
T Consensus 1680 yEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1680 YEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHHhcCchhhHHHHHHHH
Confidence 656667766665554443
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.17 E-value=3.3e-07 Score=76.86 Aligned_cols=236 Identities=14% Similarity=0.168 Sum_probs=161.7
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHH-HHHHHHHHhcccCCcc--hhh------------------------
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTY-NVLLNGVCRRASLHPS--ERF------------------------ 56 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~~--~~~------------------------ 56 (302)
.....+.+.|+.++|..+|..+.+.+ |+...| ..+..+..-....... ...
T Consensus 43 ~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~ 120 (517)
T PF12569_consen 43 KRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDF 120 (517)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhccc
Confidence 44567889999999999999999984 455544 4444444221111100 000
Q ss_pred --HHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhc----C----------CCcCH--HHH
Q 022131 57 --EKTI-RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK----G----------ICPTV--ATY 117 (302)
Q Consensus 57 --~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~ 117 (302)
...+ ..+...+..+...|++ .+|+.+-..|.......-..+++...... + -+|+. .++
T Consensus 121 ~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~ 197 (517)
T PF12569_consen 121 LEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTL 197 (517)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHH
Confidence 0111 2233344444555543 34555555555444444455555554322 1 13444 355
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 022131 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPS-AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196 (302)
Q Consensus 118 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (302)
..+...|...|++++|+.++++.++.. |+ +..|..-.+.+-+.|++.+|.+.++...... .-|-..-+..+..+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELD--LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHH
Confidence 677888999999999999999999874 44 7788888999999999999999999999987 578788888899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHH--------HHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 197 ALNRMDMVREIWNDVKGSGLGPDLDSY--------TMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
+.|+.++|.+++......+..|....+ .-...+|.+.|++..|++.|....+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999887654432221 3345788899999999988877654
No 72
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=7.5e-08 Score=78.39 Aligned_cols=247 Identities=8% Similarity=-0.028 Sum_probs=193.0
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 022131 5 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84 (302)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (302)
=|.++...|+..+-..+=.++.+. .|-.+.+|-++.--|.. .+...+|.+.|.+....+.. =...|-.
T Consensus 284 ~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~----------i~k~seARry~SKat~lD~~-fgpaWl~ 351 (611)
T KOG1173|consen 284 HIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM----------IGKYSEARRYFSKATTLDPT-FGPAWLA 351 (611)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH----------hcCcHHHHHHHHHHhhcCcc-ccHHHHH
Confidence 356778888888877777777776 45567789998888887 77889999999988765311 3468888
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (302)
..+.|+-.|.-++|+..+...-+. ++-....+--+.--|.+.++.+.|.+.|.+..... +.|+...+-+.-.....+.
T Consensus 352 fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~ 429 (611)
T KOG1173|consen 352 FGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEE 429 (611)
T ss_pred HhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhh
Confidence 999999999999999998887664 11122233445556788899999999999988763 3577777877777778899
Q ss_pred chHHHHHHHHHHhC----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 022131 165 ANGAMKLYRQMKED----GLCV-PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239 (302)
Q Consensus 165 ~~~a~~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 239 (302)
+.+|..+|+..... +..+ ....+++.|..+|.+.+..++|+..+++.... .+-+..++..+.-.|...|+++.|
T Consensus 430 y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~A 508 (611)
T KOG1173|consen 430 YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKA 508 (611)
T ss_pred hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHH
Confidence 99999999887622 1101 24567899999999999999999999998887 456889999999999999999999
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHhhc
Q 022131 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQS 268 (302)
Q Consensus 240 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 268 (302)
++.|.+... +.|+..+...++..+...
T Consensus 509 id~fhKaL~--l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 509 IDHFHKALA--LKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHh--cCCccHHHHHHHHHHHHh
Confidence 999998865 688888877777765543
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=3e-07 Score=74.97 Aligned_cols=268 Identities=9% Similarity=-0.030 Sum_probs=151.3
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 022131 8 GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 87 (302)
Q Consensus 8 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (302)
.+...|++++|.+++++..+.. +.+...+.. ...+...+.. .+....+.+.++... ...+........+..
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~------~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~ 122 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDF------SGMRDHVARVLPLWA-PENPDYWYLLGMLAF 122 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhccc------ccCchhHHHHHhccC-cCCCCcHHHHHHHHH
Confidence 3456788888888888877652 333333332 2223332222 223334444444311 111223344556667
Q ss_pred HHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CCh--hhHHHHHHHHHccCC
Q 022131 88 VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC-PSA--ETYNCFFKEYRGRKD 164 (302)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~ 164 (302)
.+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++....... |+. ..|..+...+...|+
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 7888889999999999888875 335667788888888889999999988888765321 222 235567778888899
Q ss_pred chHHHHHHHHHHhCCCCCCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHhCCC-CCCHHHHHHHHHHHHHcCCHH
Q 022131 165 ANGAMKLYRQMKEDGLCVPNMHSY-N--ILIGMFMALNRMDMVREI---WNDVKGSGL-GPDLDSYTMLIHGLCEKQKWK 237 (302)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~~~~~~a~~~---~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~ 237 (302)
+++|..++++........+..... + .++.-+...|..+.+.+. ......... ............++...|+.+
T Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKD 281 (355)
T ss_pred HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHH
Confidence 999999998875442101222211 1 223333334433322222 111111100 111122235666777888899
Q ss_pred HHHHHHHHHHHCCCC------CchhhHHHHH--HHHhhcchHHHHHHHHHhccccC
Q 022131 238 EACQYFVEMIEKGLL------PQKVTFETLY--RGLIQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 238 ~a~~~~~~~~~~~~~------p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~ 285 (302)
.|..++..+...... ....+-..++ -++...|+.++|.+.+.......
T Consensus 282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999888653211 0111222233 34557888899988887765443
No 74
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=1.9e-06 Score=69.23 Aligned_cols=260 Identities=12% Similarity=0.094 Sum_probs=157.1
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 022131 7 YGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86 (302)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (302)
..--..|++..|.++|+...+. .|+...|++.+..=.+ .+.++.|..+|++..-. .|+..+|--..
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElR----------ykeieraR~IYerfV~~--HP~v~~wikya 214 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELR----------YKEIERARSIYERFVLV--HPKVSNWIKYA 214 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHH----------hhHHHHHHHHHHHHhee--cccHHHHHHHH
Confidence 3334568899999999998887 8999999999998888 88999999999998864 58899988888
Q ss_pred HHHHhcCCchhHHHHHHHHHhc-CC-CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC---------------------
Q 022131 87 HVYSRAHQPQLSLDKLNFMKEK-GI-CPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN--------------------- 143 (302)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------------- 143 (302)
+.=.+.|+...+..+|+...+. |- ..+...+.+....=.++..++.|.-+|+-.++.
T Consensus 215 rFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfG 294 (677)
T KOG1915|consen 215 RFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFG 294 (677)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhc
Confidence 8888888888888888877654 10 011222333322222334444444444333222
Q ss_pred ----------------------CCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHH--HH-----HH---H
Q 022131 144 ----------------------GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH--SY-----NI---L 191 (302)
Q Consensus 144 ----------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~-----~~---l 191 (302)
.-+.|-.+|--.++.-...|+.+...++|++....- +|-.. .| .. .
T Consensus 295 d~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv--pp~~ekr~W~RYIYLWinYa 372 (677)
T KOG1915|consen 295 DKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV--PPASEKRYWRRYIYLWINYA 372 (677)
T ss_pred chhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CchhHHHHHHHHHHHHHHHH
Confidence 012355666677777777788888888888777663 33211 11 11 1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhh
Q 022131 192 IGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG----LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267 (302)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~----~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 267 (302)
+-.=....+.+.+.++++..++. ++....||..+--. -.++.+...|.+++...+ |.-|...+|...|..-.+
T Consensus 373 lyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElq 449 (677)
T KOG1915|consen 373 LYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQ 449 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHH
Confidence 11112345666666666666553 33333333332222 234455555555555443 345666666666666666
Q ss_pred cchHHHHHHHHHhccccC
Q 022131 268 SDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 268 ~g~~~~a~~~~~~~~~~~ 285 (302)
.+.++.+..++++..+.+
T Consensus 450 L~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 450 LREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HhhHHHHHHHHHHHHhcC
Confidence 666666666666655543
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.07 E-value=1.8e-06 Score=70.52 Aligned_cols=269 Identities=7% Similarity=-0.048 Sum_probs=162.7
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCC-CcccHHHHHHH-HHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 022131 3 TSLIYGWCKINRIDMAERFLGEMIERG-VEPNVVTYNVL-LNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80 (302)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l-l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (302)
..+...+...|+.+.+.+.+....+.. ..++......+ ...+.. .+++++|.+.+++..+.. +.+..
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~----------~g~~~~A~~~~~~~l~~~-P~~~~ 78 (355)
T cd05804 10 AAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWI----------AGDLPKALALLEQLLDDY-PRDLL 78 (355)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHC-CCcHH
Confidence 344556666788888777777765442 12232222221 112333 678899999999988763 33444
Q ss_pred HHHHHHHHHHh----cCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 022131 81 SFSIVLHVYSR----AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156 (302)
Q Consensus 81 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 156 (302)
.+.. ...+.. .+..+.+.+.+... ....+........+...+...|++++|...+++..+... .+...+..+.
T Consensus 79 a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la 155 (355)
T cd05804 79 ALKL-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVA 155 (355)
T ss_pred HHHH-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHH
Confidence 4442 223333 34444555554441 111222344555667788899999999999999998753 4567788888
Q ss_pred HHHHccCCchHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHH
Q 022131 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNM--HSYNILIGMFMALNRMDMVREIWNDVKGSGL-GPDLDSY-T--MLIHGL 230 (302)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~ 230 (302)
.++...|+++++...+.+........|+. ..|..+...+...|+.++|..++++...... .+..... + .++..+
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRL 235 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHH
Confidence 99999999999999999988764212332 3455788889999999999999999865322 1222211 1 223333
Q ss_pred HHcCCHHHHHHH--HHHHHHCCCC--CchhhHHHHHHHHhhcchHHHHHHHHHhccccC
Q 022131 231 CEKQKWKEACQY--FVEMIEKGLL--PQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 231 ~~~g~~~~a~~~--~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (302)
...|....+.+. +......... ...........++...|+.++|...++.+....
T Consensus 236 ~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 236 ELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 444433333222 1111111111 111222356677889999999999998876643
No 76
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.03 E-value=3e-08 Score=77.33 Aligned_cols=223 Identities=13% Similarity=0.119 Sum_probs=146.6
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCC-CHHHHH
Q 022131 5 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP-DVTSFS 83 (302)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 83 (302)
+.+++...|+++.++ .++... -.|.......+...+.. ..+-+.++.-+++.......+ +.....
T Consensus 41 ~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~----------~~~~e~~l~~l~~~~~~~~~~~~~~~~~ 106 (290)
T PF04733_consen 41 QYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSS----------PSDKESALEELKELLADQAGESNEIVQL 106 (290)
T ss_dssp HHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCT----------STTHHCHHHHHHHCCCTS---CHHHHHH
T ss_pred HHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhC----------ccchHHHHHHHHHHHHhccccccHHHHH
Confidence 345566666655433 333333 26666666555544433 122344444444444333232 333333
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH---
Q 022131 84 IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR--- 160 (302)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 160 (302)
.....+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ +..+...+..++.
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~ 177 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLA 177 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHH
Confidence 3445677789999999888653 366777888999999999999999999998752 3344444555443
Q ss_pred -ccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HH
Q 022131 161 -GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW-KE 238 (302)
Q Consensus 161 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~ 238 (302)
..+.+.+|..+|+++.+.. .+++.+.+.+..++...|++++|.+++.+..... +-+..+...++.+....|+. +.
T Consensus 178 ~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 178 TGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp HTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred hCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhH
Confidence 3447899999999998764 6889999999999999999999999999988763 34677777888888888887 67
Q ss_pred HHHHHHHHHHCCCCCch
Q 022131 239 ACQYFVEMIEKGLLPQK 255 (302)
Q Consensus 239 a~~~~~~~~~~~~~p~~ 255 (302)
+.+++.++... .|+.
T Consensus 255 ~~~~l~qL~~~--~p~h 269 (290)
T PF04733_consen 255 AERYLSQLKQS--NPNH 269 (290)
T ss_dssp HHHHHHHCHHH--TTTS
T ss_pred HHHHHHHHHHh--CCCC
Confidence 78888888763 4543
No 77
>PLN02789 farnesyltranstransferase
Probab=99.02 E-value=1.8e-06 Score=68.33 Aligned_cols=213 Identities=11% Similarity=0.060 Sum_probs=138.5
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHH-HHHHHHHHHHHHHhcCCCCCHHH
Q 022131 3 TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK-TIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
+.+-..+...++.++|+.+.+++++.. +-+..+|+..-.++.. .+ .+++++..++++.+.+.+ +..+
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~----------L~~~l~eeL~~~~~~i~~npk-nyqa 108 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEA----------LDADLEEELDFAEDVAEDNPK-NYQI 108 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHH----------cchhHHHHHHHHHHHHHHCCc-chHH
Confidence 344455566778888888888887762 2233455555555554 33 567888888888876533 5666
Q ss_pred HHHHHHHHHhcCCc--hhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 022131 82 FSIVLHVYSRAHQP--QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159 (302)
Q Consensus 82 ~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (302)
|+.....+.+.|+. ++++.+++.+.+...+ +..+|+....++.+.|+++++++.++++++.++ -+..+|+.....+
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl 186 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVI 186 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHH
Confidence 77665555556653 5677788788777643 777888888888888888888888888887765 4666676666555
Q ss_pred Hcc---CCc----hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 022131 160 RGR---KDA----NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL----NRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228 (302)
Q Consensus 160 ~~~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 228 (302)
.+. |.. ++.+....++.... +-|...|+.+...+... +...+|.+++.+..+.+ +.+......|+.
T Consensus 187 ~~~~~l~~~~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d 263 (320)
T PLN02789 187 TRSPLLGGLEAMRDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLD 263 (320)
T ss_pred HhccccccccccHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHH
Confidence 443 222 35566665555554 56777777777776662 33455777777766542 335566677777
Q ss_pred HHHH
Q 022131 229 GLCE 232 (302)
Q Consensus 229 ~~~~ 232 (302)
.|+.
T Consensus 264 ~~~~ 267 (320)
T PLN02789 264 LLCE 267 (320)
T ss_pred HHHh
Confidence 7764
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=9.2e-07 Score=69.72 Aligned_cols=156 Identities=10% Similarity=-0.019 Sum_probs=91.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHH-HHHHh-c
Q 022131 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI-GMFMA-L 198 (302)
Q Consensus 121 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~ 198 (302)
..++...|++++|.-.|+......+ .+...|.-++..|...|.+.+|..+-++..+.- +.+..+.+.+. ..|.- .
T Consensus 341 G~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp 417 (564)
T KOG1174|consen 341 GRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDP 417 (564)
T ss_pred cHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCc
Confidence 3444455555555555555544321 345555555555555555555555544444332 23333333331 12211 1
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHH
Q 022131 199 NRMDMVREIWNDVKGSGLGPD-LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277 (302)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 277 (302)
..-++|.+++++-... .|+ ....+.+...|...|..+.++.++++... ..||....+.|.+.+...+.+.++.+.
T Consensus 418 ~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 418 RMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred hhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 1234455555544442 333 34556677788888999999999988876 478888888888888888888888887
Q ss_pred HHhccc
Q 022131 278 KKKLDE 283 (302)
Q Consensus 278 ~~~~~~ 283 (302)
|.....
T Consensus 494 y~~ALr 499 (564)
T KOG1174|consen 494 YYKALR 499 (564)
T ss_pred HHHHHh
Confidence 765443
No 79
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=3.4e-07 Score=74.89 Aligned_cols=252 Identities=11% Similarity=0.049 Sum_probs=186.4
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 022131 8 GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 87 (302)
Q Consensus 8 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (302)
-+.+.|+..+|.-.|+...+.. |-+...|..|-..... .+.-..|+..+++..+.. +-|....-.|.-
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaE----------NE~E~~ai~AL~rcl~Ld-P~NleaLmaLAV 361 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAE----------NENEQNAISALRRCLELD-PTNLEALMALAV 361 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhh----------ccchHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence 4578899999999999888773 4467788888888877 667788999999999875 336778888889
Q ss_pred HHHhcCCchhHHHHHHHHHhcCCCc--------CHHHHHHHHHHHhccCCHHHHHHHHHHHH-HCCCCCChhhHHHHHHH
Q 022131 88 VYSRAHQPQLSLDKLNFMKEKGICP--------TVATYSSVVKCLCSCGRIEDAEELLGEMV-RNGVCPSAETYNCFFKE 158 (302)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~ 158 (302)
.|...|.-..|.+.+.......++- +...-.. ..+.....+....++|-++. +.+..+|+.....|--.
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence 9999999999999998876653210 0000000 12222233445555555544 44555788899999999
Q ss_pred HHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHH
Q 022131 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD-LDSYTMLIHGLCEKQKWK 237 (302)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 237 (302)
|...|+++++.+.|+...... +-|...||.|...++...+..+|+..|++.++. +|+ +++.-.|.-+|...|.++
T Consensus 440 y~ls~efdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~yk 515 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYK 515 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHH
Confidence 999999999999999999986 778889999999999999999999999999985 554 345556777789999999
Q ss_pred HHHHHHHHHHHC---C------CCCchhhHHHHHHHHhhcchHHHHHHH
Q 022131 238 EACQYFVEMIEK---G------LLPQKVTFETLYRGLIQSDMLRTWRRL 277 (302)
Q Consensus 238 ~a~~~~~~~~~~---~------~~p~~~~~~~l~~~~~~~g~~~~a~~~ 277 (302)
+|...|-..+.. + -.++...|..|=.++.-.++.|-+.+.
T Consensus 516 EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 999998876532 1 122345677766677777776655444
No 80
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.96 E-value=1.6e-07 Score=78.72 Aligned_cols=207 Identities=14% Similarity=0.041 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 136 (302)
.|-...|..+|++.. .|.-++.+|...|+..+|..+..+..+. +||+..|..+.+......-+++|.++
T Consensus 411 lGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawEl 479 (777)
T KOG1128|consen 411 LGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWEL 479 (777)
T ss_pred cchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHH
Confidence 566677777776643 5677888999999999999998888774 68999999999888888888889888
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 022131 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216 (302)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (302)
.+..... +-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.++++.|.+.|...... -
T Consensus 480 sn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL-~ 549 (777)
T KOG1128|consen 480 SNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL-E 549 (777)
T ss_pred hhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc-C
Confidence 8875443 11122222345788999999998888776 677788888888888999999999999988875 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccC
Q 022131 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 217 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (302)
+-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+-...+-|.+++|.+.+.++.+..
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 4467889999999999999999999999998876 5566677778888889999999999988876543
No 81
>PF12854 PPR_1: PPR repeat
Probab=98.96 E-value=1.3e-09 Score=54.94 Aligned_cols=32 Identities=41% Similarity=0.734 Sum_probs=18.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022131 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246 (302)
Q Consensus 215 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 246 (302)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 82
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.93 E-value=1.7e-06 Score=77.84 Aligned_cols=226 Identities=15% Similarity=0.105 Sum_probs=174.6
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhC-CCccc---HHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIER-GVEPN---VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 77 (302)
|-..|......++.++|+++.++.+.. ++.-. ...|.++++.-.. .|.-+...++|+++.+.. -
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~----------yG~eesl~kVFeRAcqyc--d 1528 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA----------YGTEESLKKVFERACQYC--D 1528 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh----------hCcHHHHHHHHHHHHHhc--c
Confidence 455677788899999999999999865 22222 2345555554444 455577889999998863 2
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CChhhHHHHH
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC-PSAETYNCFF 156 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 156 (302)
....|..|...|.+.+..++|.++++.|.+. +.-....|...+..+.+..+-+.|..++++..+.-.+ -........+
T Consensus 1529 ~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1529 AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 3567889999999999999999999999876 2347789999999999999999999999998876221 1234445556
Q ss_pred HHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcC
Q 022131 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL--DSYTMLIHGLCEKQ 234 (302)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g 234 (302)
..-.+.|+.+.+..+|+...... +--...|+..++.=.++|+.+.++.+|+++...++.|-. ..|...+..=-..|
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 66678999999999999999886 667789999999999999999999999999998877643 45666666555566
Q ss_pred CHHHHHHH
Q 022131 235 KWKEACQY 242 (302)
Q Consensus 235 ~~~~a~~~ 242 (302)
+-+.+..+
T Consensus 1686 de~~vE~V 1693 (1710)
T KOG1070|consen 1686 DEKNVEYV 1693 (1710)
T ss_pred chhhHHHH
Confidence 65544443
No 83
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.92 E-value=1.4e-06 Score=64.34 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=115.9
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCc
Q 022131 86 LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165 (302)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 165 (302)
+-.|...|+++.+....+.+.. |. ..+...++.+++...++...+... .+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCH
Confidence 3467788888776544322211 10 022236677888888888777644 6788999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 022131 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMF-MALNR--MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242 (302)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 242 (302)
++|...+++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.. +-+...+..+...+...|++++|+..
T Consensus 90 ~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998886 56788888888764 66676 589999999998863 33778888888889999999999999
Q ss_pred HHHHHHCCCCCchhhH
Q 022131 243 FVEMIEKGLLPQKVTF 258 (302)
Q Consensus 243 ~~~~~~~~~~p~~~~~ 258 (302)
|+++.+. .+|+..-+
T Consensus 167 ~~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 167 WQKVLDL-NSPRVNRT 181 (198)
T ss_pred HHHHHhh-CCCCccHH
Confidence 9999875 35555443
No 84
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.92 E-value=2.7e-07 Score=77.48 Aligned_cols=228 Identities=9% Similarity=0.067 Sum_probs=169.8
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 022131 5 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84 (302)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (302)
+...+.+.|-...|..+|+++. .|..++.+|.. .|+..+|..+..+-.++ +||+..|..
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~----------lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLL----------LGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHH----------hcccchHHHHHHHHhcC--CCcchhHHH
Confidence 4556777888888888888764 46677778888 66677788887777764 788888888
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (302)
+........-+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+... ....+|-.+--+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhh
Confidence 888776666677777777654322 222333334457899999999988777643 467788888888888999
Q ss_pred chHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 022131 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244 (302)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 244 (302)
+..+.+.|....... +.+...||++-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.
T Consensus 535 ~q~av~aF~rcvtL~--Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLE--PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhhcC--CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 999999998888774 5667889999999999999999999999998876 4566777778888889999999999998
Q ss_pred HHHHCC-CCCchhhHHHHHHH
Q 022131 245 EMIEKG-LLPQKVTFETLYRG 264 (302)
Q Consensus 245 ~~~~~~-~~p~~~~~~~l~~~ 264 (302)
++.+.. ..-|......++..
T Consensus 612 rll~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 612 RLLDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred HHHHhhhhcccchhhHHHHHH
Confidence 886431 11244444444433
No 85
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.91 E-value=4.8e-07 Score=69.22 Aligned_cols=188 Identities=7% Similarity=-0.016 Sum_probs=121.7
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCC-c-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh--hhH
Q 022131 77 PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-P-TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA--ETY 152 (302)
Q Consensus 77 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 152 (302)
.....+-.+...+...|+++.|...++++...... | ...++..+..++.+.|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35667777888888899999999999988776421 1 1246677888888999999999999998876432111 134
Q ss_pred HHHHHHHHcc--------CCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 022131 153 NCFFKEYRGR--------KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224 (302)
Q Consensus 153 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (302)
..+..++... |+.++|.+.++.+.... +.+...+..+..... ... ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence 4455555543 66778888888887764 223233222211100 000 000 0112
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC--CCCchhhHHHHHHHHhhcchHHHHHHHHHhcccc
Q 022131 225 MLIHGLCEKQKWKEACQYFVEMIEKG--LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 225 ~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (302)
.+...+.+.|++.+|...+++..+.. -+.....+..+..++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566788899999999888887641 1123467778888888999999998888877654
No 86
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=1.6e-05 Score=64.08 Aligned_cols=156 Identities=12% Similarity=0.091 Sum_probs=102.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHH----HHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 022131 127 CGRIEDAEELLGEMVRNGVCPSAETYNCFFK----EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202 (302)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (302)
..+.+.+.++++..++. ++....||.-+-- .-.++.+...|.+++...... -|-..+|...|..=.+.+++|
T Consensus 379 ~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~---cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK---CPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred hhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc---CCchhHHHHHHHHHHHHhhHH
Confidence 34555555555555552 2223333333322 223556667777777766654 466677777777777788888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCchhhHHHHHHHHhhcchHHHHHHHHHhc
Q 022131 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG-LLPQKVTFETLYRGLIQSDMLRTWRRLKKKL 281 (302)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 281 (302)
.+..++++.+..+ +-|..+|......=...|+.+.|..+|.-.+++. +......|...|.--...|.+++|..+++++
T Consensus 455 RcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 455 RCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 8888888888763 3366777777777778888888888888887652 2223345556666666788888999888888
Q ss_pred cccCCC
Q 022131 282 DEESIT 287 (302)
Q Consensus 282 ~~~~~~ 287 (302)
.+....
T Consensus 534 L~rt~h 539 (677)
T KOG1915|consen 534 LDRTQH 539 (677)
T ss_pred HHhccc
Confidence 765444
No 87
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.90 E-value=1.1e-06 Score=67.20 Aligned_cols=172 Identities=9% Similarity=-0.036 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCH--HHHHHHHHHHhcc-----
Q 022131 57 EKTIRNAEKVFDEMRVRGIE-P-DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV--ATYSSVVKCLCSC----- 127 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~----- 127 (302)
.+++++|...|+++...... | ...++..+..++.+.|++++|...++.+.+....... .++..+..++...
T Consensus 46 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~ 125 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVD 125 (235)
T ss_pred cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccccc
Confidence 57789999999998876321 1 1246778889999999999999999999887432111 2455556666554
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 022131 128 ---GRIEDAEELLGEMVRNGVCPSA-ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203 (302)
Q Consensus 128 ---~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (302)
|+.++|.+.++.+.+.. |+. ..+..+.... .+... . ......+...+.+.|++++
T Consensus 126 ~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~--------------~~~~~----~-~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 126 RDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMD--------------YLRNR----L-AGKELYVARFYLKRGAYVA 184 (235)
T ss_pred CCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHH--------------HHHHH----H-HHHHHHHHHHHHHcCChHH
Confidence 78899999999998763 333 2332221111 00000 0 0111245667889999999
Q ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 022131 204 VREIWNDVKGSG--LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 204 a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 249 (302)
|...++...+.. .+.....+..+..++...|++++|..+++.+...
T Consensus 185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999988752 1223578889999999999999999999888653
No 88
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.89 E-value=8.6e-06 Score=67.93 Aligned_cols=210 Identities=11% Similarity=0.158 Sum_probs=132.9
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhc---------c---cCCcchhhHHHHHHHHHHHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR---------A---SLHPSERFEKTIRNAEKVFDE 69 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------~---~~~~~~~~~~~~~~a~~~~~~ 69 (302)
|.+|.+.|.+.|.+++|.++|++.... ..++.-|+.+.++|+.- + ......+..-+++-...-|+.
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 789999999999999999999998876 44666777777777651 0 000011112233444455555
Q ss_pred HHhcC-----------CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCc------CHHHHHHHHHHHhccCCHHH
Q 022131 70 MRVRG-----------IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP------TVATYSSVVKCLCSCGRIED 132 (302)
Q Consensus 70 ~~~~~-----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~ 132 (302)
+.... -+-+...|..-...+ .|+..+....+.+..+. +.| -...|..+.+.|-..|+++.
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 44432 112333444433333 56677777778777654 222 23457888899999999999
Q ss_pred HHHHHHHHHHCCCCCC---hhhHHHHHHHHHccCCchHHHHHHHHHHhCCC----------CCC------CHHHHHHHHH
Q 022131 133 AEELLGEMVRNGVCPS---AETYNCFFKEYRGRKDANGAMKLYRQMKEDGL----------CVP------NMHSYNILIG 193 (302)
Q Consensus 133 a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~------~~~~~~~l~~ 193 (302)
|..+|++..+...+-- ..+|......=.++.+++.|+++.+...-... .++ +...|...++
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 9999999887643211 34555556666778888888888887654321 011 2334555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC
Q 022131 194 MFMALNRMDMVREIWNDVKGSGL 216 (302)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~ 216 (302)
.--..|-++....+++++.+..+
T Consensus 486 leEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhc
Confidence 66667778888888888776543
No 89
>PLN02789 farnesyltranstransferase
Probab=98.88 E-value=5.7e-06 Score=65.62 Aligned_cols=218 Identities=10% Similarity=-0.014 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCH--HHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH-QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI--EDA 133 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~a 133 (302)
.+..++|+.+..++.+.. +-+..+|+.--.++...| ++++++..++++.+...+ +..+|+.....+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHH
Confidence 556688999999988874 225567777777777777 579999999999887644 666777666566666653 678
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CCH----HHHHH
Q 022131 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL---NRM----DMVRE 206 (302)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~a~~ 206 (302)
..+++++.+... -+..+|+....++...|+++++++.+.++.+.+ +.|...|+.....+.+. |.. ++...
T Consensus 128 l~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 128 LEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 889989888754 578899999999999999999999999999987 57778887776666554 222 45666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcc-------------
Q 022131 207 IWNDVKGSGLGPDLDSYTMLIHGLCEK----QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD------------- 269 (302)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------------- 269 (302)
...+++.. .+-|...|+.+...+... +...+|.+.+.+..+.+ ..+......|++.|....
T Consensus 205 y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~ 282 (320)
T PLN02789 205 YTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTL 282 (320)
T ss_pred HHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 66666665 345778888887777663 34566888888876643 335677788888887632
Q ss_pred -----hHHHHHHHHHhc
Q 022131 270 -----MLRTWRRLKKKL 281 (302)
Q Consensus 270 -----~~~~a~~~~~~~ 281 (302)
..++|.++++.+
T Consensus 283 ~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 283 AEELSDSTLAQAVCSEL 299 (320)
T ss_pred ccccccHHHHHHHHHHH
Confidence 346788888888
No 90
>PF12854 PPR_1: PPR repeat
Probab=98.87 E-value=3.7e-09 Score=53.31 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=32.2
Q ss_pred CCCCCchhhHHHHHHHHhhcchHHHHHHHHHhcc
Q 022131 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282 (302)
Q Consensus 249 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (302)
+|+.||..||+.||.+|++.|++++|.+++++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999984
No 91
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.84 E-value=3.2e-06 Score=62.73 Aligned_cols=154 Identities=14% Similarity=-0.016 Sum_probs=68.3
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (302)
+-..+...|+-+....+........ +.|.......+....+.|++..|+..+++..... ++|..+|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 3334444444444444444432221 1233333344444445555555555555444432 2444455555555555555
Q ss_pred chHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 022131 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243 (302)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 243 (302)
+++|..-|.+..+.. .-+...++.+.-.+.-.|+.+.|..++......+ .-|...-..+.......|+++.|..+.
T Consensus 150 ~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 555555554444443 2333344444444444455555555544444331 123344444444444455555544443
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=4.9e-07 Score=73.99 Aligned_cols=217 Identities=11% Similarity=0.043 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 136 (302)
.|++.+|.-.|+.....+ +-+...|..|.......++-..|+..+++..+.... +....-.|.-.|...|.-.+|...
T Consensus 298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHHHH
Confidence 566788888888888875 337889999999999999999999999999988633 677888888899999999999999
Q ss_pred HHHHHHCCCCC--------ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 022131 137 LGEMVRNGVCP--------SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208 (302)
Q Consensus 137 ~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (302)
++.-+...++- +...-.. ..+..........++|-++......++|..+...|.-.|--.|++++|.+.|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 99886643210 0000000 1111222234455555555444322578888899998999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCch-hhHHHHHHHHhhcchHHHHHHHHHh
Q 022131 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK-VTFETLYRGLIQSDMLRTWRRLKKK 280 (302)
Q Consensus 209 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (302)
+..+... +-|..+||.|-..++...+..+|+..|.+.++ +.|+. .+...|.-+|...|.+++|...|-.
T Consensus 454 ~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 454 EAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 9998852 34678999999999999999999999999988 67875 4556678899999999999887644
No 93
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.81 E-value=9.4e-06 Score=60.34 Aligned_cols=163 Identities=11% Similarity=0.035 Sum_probs=132.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 022131 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192 (302)
Q Consensus 113 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 192 (302)
|... ..+-..+...|+-+....+........ +.|............+.|++..|...+++..... ++|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--PTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--CCChhhhhHHH
Confidence 4444 666777788888888888887765442 2455566678889999999999999999998886 89999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHH
Q 022131 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272 (302)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 272 (302)
-+|.+.|+.+.|..-|.+..+. ..-+....+.+.-.+.-.|+++.|..++......+ .-|...-..+..+....|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence 9999999999999999998886 23356778888888899999999999999987753 236677788888899999999
Q ss_pred HHHHHHHhc
Q 022131 273 TWRRLKKKL 281 (302)
Q Consensus 273 ~a~~~~~~~ 281 (302)
+|+.+...-
T Consensus 220 ~A~~i~~~e 228 (257)
T COG5010 220 EAEDIAVQE 228 (257)
T ss_pred HHHhhcccc
Confidence 999876543
No 94
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.78 E-value=1.2e-06 Score=64.71 Aligned_cols=127 Identities=10% Similarity=0.089 Sum_probs=103.1
Q ss_pred cCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHccCC--chHH
Q 022131 92 AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE-YRGRKD--ANGA 168 (302)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a 168 (302)
.++.+++...++...+.+ +.+...|..+...|...|++++|...|++..+... .+...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 566677888888877765 44888999999999999999999999999988754 467777777776 467676 4899
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 022131 169 MKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSY 223 (302)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 223 (302)
.+++++..+.+ +.+...+..+...+.+.|++++|...|+++.+. .+|+..-+
T Consensus 130 ~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 130 REMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRT 181 (198)
T ss_pred HHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHH
Confidence 99999999987 667888899999999999999999999999886 44555444
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.76 E-value=2e-05 Score=68.95 Aligned_cols=133 Identities=10% Similarity=0.025 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 157 (302)
+...+-.|.....+.|..++|..+++...+... -+......+...+.+.+++++|....++...... -+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHH
Confidence 455555555555555555555555555555421 1333445555555555555555555555555432 23444444555
Q ss_pred HHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022131 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214 (302)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (302)
++...|++++|..+|+++...+ +.+..++..+..++...|+.++|...|++..+.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555555532 333555555555555555555555555555543
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.75 E-value=2.6e-06 Score=59.48 Aligned_cols=94 Identities=11% Similarity=-0.094 Sum_probs=58.1
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 022131 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231 (302)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 231 (302)
+......+...|++++|...|+...... +.+...+..+..++...|++++|...|+..... -+.+...+..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALML-DASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHH
Confidence 3344555566666666666666666554 455666666666666666666666666666654 2335556666666666
Q ss_pred HcCCHHHHHHHHHHHHH
Q 022131 232 EKQKWKEACQYFVEMIE 248 (302)
Q Consensus 232 ~~g~~~~a~~~~~~~~~ 248 (302)
..|++++|...|+...+
T Consensus 104 ~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 104 MMGEPGLAREAFQTAIK 120 (144)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666655
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.75 E-value=2.1e-06 Score=59.95 Aligned_cols=95 Identities=4% Similarity=-0.144 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (302)
+..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++...... .+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 3344555556666666666666665553 22555566666666666666666666666665432 355555666666666
Q ss_pred cCCchHHHHHHHHHHhC
Q 022131 162 RKDANGAMKLYRQMKED 178 (302)
Q Consensus 162 ~~~~~~a~~~~~~~~~~ 178 (302)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666555
No 98
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=1.3e-05 Score=59.23 Aligned_cols=187 Identities=9% Similarity=0.066 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHhc---C-CCCCHH-HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHH
Q 022131 57 EKTIRNAEKVFDEMRVR---G-IEPDVT-SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIE 131 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 131 (302)
..+.++..+++.++... | ..++.. .+..++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 45667777777777642 3 444443 45556666677888888888888887653 334444333333455678888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022131 132 DAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211 (302)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (302)
+|+++++.+.+.+ +.|..++-.-+...-..|+.-+|++-+....+.- ..|...|.-+...|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--MNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 8888888888775 3466677766777777788888888888877775 678888888888888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 022131 212 KGSGLGPDLDSYTMLIHGLCEKQ---KWKEACQYFVEMIE 248 (302)
Q Consensus 212 ~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~ 248 (302)
.-. -|.+...+..+...+.-.| +...+.++|.+..+
T Consensus 181 ll~-~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLI-QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 764 2334555566666654443 56677777877765
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=8.1e-06 Score=61.89 Aligned_cols=264 Identities=13% Similarity=0.111 Sum_probs=153.1
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
|.+.+..+.+..+++.|++++..-.++. +.+......+-.+|.. ..++..|-..|+++... .|...-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~----------~Q~f~~AA~CYeQL~ql--~P~~~q 79 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYR----------LQEFALAAECYEQLGQL--HPELEQ 79 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhh--ChHHHH
Confidence 5677888889999999999998887762 2266677778888888 88889999999888765 444444
Q ss_pred HHH-HHHHHHhcCCchhHHHHHHHHHhcC-------------------C------------CcCHHHHHHHHHHHhccCC
Q 022131 82 FSI-VLHVYSRAHQPQLSLDKLNFMKEKG-------------------I------------CPTVATYSSVVKCLCSCGR 129 (302)
Q Consensus 82 ~~~-ll~~~~~~~~~~~a~~~~~~~~~~~-------------------~------------~~~~~~~~~ll~~~~~~~~ 129 (302)
|.. -...+.+.+.+..|+++...|.+.. + +-+..+.+...-...+.|+
T Consensus 80 YrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 80 YRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecccc
Confidence 432 2344556667777777766664320 0 0011222222222345667
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCC------------CCCHH-----------
Q 022131 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC------------VPNMH----------- 186 (302)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~----------- 186 (302)
++.|.+-|+...+.+---....|+..+. ..+.++.+.|++...++.+.|+. -||+.
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 7777777776666533233445554443 34556677777777777766640 01111
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHH
Q 022131 187 ----SYNILIGMFMALNRMDMVREIWNDVKGS-GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261 (302)
Q Consensus 187 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 261 (302)
.+|.-...+.+.++.+.|.+.+-.|.-+ ....|+.|...+.-. -..+++.+..+-+.-+.+.+ +-...||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHH
Confidence 1111122233556666666665555432 122345555443322 12344444555555554432 2345788888
Q ss_pred HHHHhhcchHHHHHHHHHhc
Q 022131 262 YRGLIQSDMLRTWRRLKKKL 281 (302)
Q Consensus 262 ~~~~~~~g~~~~a~~~~~~~ 281 (302)
+-.|++..-++-|-.++.+-
T Consensus 317 LllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhC
Confidence 88888888888888887654
No 100
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.73 E-value=8.5e-06 Score=71.19 Aligned_cols=145 Identities=7% Similarity=0.024 Sum_probs=109.9
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHH
Q 022131 111 CPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190 (302)
Q Consensus 111 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 190 (302)
+.+...+..|.....+.|++++|+.+++...+... -+......+...+.+.+++++|....++..... +.+......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHH
Confidence 44677888888888888888888888888887632 345667777788888888888888888888875 566677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHH
Q 022131 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260 (302)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 260 (302)
+..++.+.|++++|..+|+++... .+-+..++..+..++...|+.++|...|++..+. ..|....|+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHH
Confidence 778888888888888888888873 2334677888888888888888888888888765 2333444433
No 101
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=3.4e-05 Score=57.17 Aligned_cols=188 Identities=11% Similarity=0.086 Sum_probs=141.4
Q ss_pred cCCcchHHHHHHHHHhC---C-CcccHH-HHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 022131 12 INRIDMAERFLGEMIER---G-VEPNVV-TYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86 (302)
Q Consensus 12 ~g~~~~a~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (302)
..+.++..+++.++... | ..++.. .|..++-+... .++.+.|...++++..+- +-+..+-..-.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld----------~~~~~lAq~C~~~L~~~f-p~S~RV~~lka 93 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALD----------TGRDDLAQKCINQLRDRF-PGSKRVGKLKA 93 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHH----------hcchHHHHHHHHHHHHhC-CCChhHHHHHH
Confidence 35678899999888754 4 455554 34445555555 778889999999988763 32333333333
Q ss_pred HHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCch
Q 022131 87 HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166 (302)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 166 (302)
..+-..|++++|+++++.+.+.+ +.|..++-.-+...-..|+..+|++-+....+. +..|...|..+...|...|+++
T Consensus 94 m~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 94 MLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred HHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHH
Confidence 34556899999999999999987 447777777777777788888999988888876 5579999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 022131 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN---RMDMVREIWNDVKGS 214 (302)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 214 (302)
+|.-.++++.-.. |.++..+..+...+.-.| +...+.+.+.+..+.
T Consensus 172 kA~fClEE~ll~~--P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 172 KAAFCLEELLLIQ--PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9999999999885 566666666666554443 567788899988875
No 102
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.4e-05 Score=62.05 Aligned_cols=187 Identities=11% Similarity=0.023 Sum_probs=92.6
Q ss_pred HhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHH
Q 022131 90 SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAM 169 (302)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 169 (302)
.+.|+.+....+...+.... .-+...|..-.......++++.|+.+-++.++.+. .+...+-.-...+...+++++|.
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~ 354 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAV 354 (564)
T ss_pred HhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHH
Confidence 34444444444444443331 11222333333333444555555555555554422 22333333334455566666666
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHH
Q 022131 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI-HGLC-EKQKWKEACQYFVEMI 247 (302)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~a~~~~~~~~ 247 (302)
-.|+...... +-+..+|.-|+.+|...|.+.+|..+-+...+. ++-+..+...+- ..|. ...--++|..++++..
T Consensus 355 IaFR~Aq~La--p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L 431 (564)
T KOG1174|consen 355 IAFRTAQMLA--PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL 431 (564)
T ss_pred HHHHHHHhcc--hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh
Confidence 6666665553 445666666666666666666666555544432 223333433331 1111 1122355555555544
Q ss_pred HCCCCCch-hhHHHHHHHHhhcchHHHHHHHHHhccc
Q 022131 248 EKGLLPQK-VTFETLYRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 248 ~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
. +.|+. .....+...|...|..+.+..++++-..
T Consensus 432 ~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 432 K--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred c--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 3 34443 3445556667777777777777766443
No 103
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=2.5e-05 Score=58.26 Aligned_cols=139 Identities=12% Similarity=0.018 Sum_probs=73.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--
Q 022131 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA-- 197 (302)
Q Consensus 120 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 197 (302)
-...|...|++++|++...... +......=+..+.+..+.+-|...++.|.+- .+..+.+.|.+++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la 183 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLA 183 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHh
Confidence 3344556666666665555411 2222222233344555556666666666553 244555555555543
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcch
Q 022131 198 --LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270 (302)
Q Consensus 198 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 270 (302)
.+...+|..+|++|.++ .+|+..+.+-...++...|++++|..++++..++. .-++.+...++-.....|.
T Consensus 184 ~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGK 256 (299)
T ss_pred ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCC
Confidence 23455666666666554 45666666666666666666666666666665542 2244455444444444443
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.70 E-value=9.9e-06 Score=71.77 Aligned_cols=136 Identities=11% Similarity=0.070 Sum_probs=74.2
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHH-HHHHhcccCCcchhh--------HHHHHHHHHHHHHHHh
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLL-NGVCRRASLHPSERF--------EKTIRNAEKVFDEMRV 72 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~~~~~--------~~~~~~a~~~~~~~~~ 72 (302)
+..|+..+...+++++|.++.+...+. .|+...+-.+. ..+.+.+....+.-+ ..++.-...+...+..
T Consensus 34 ~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~ 111 (906)
T PRK14720 34 LDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILL 111 (906)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHh
Confidence 457888999999999999999977665 45443332222 234442221110000 1111112222222222
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 022131 73 RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143 (302)
Q Consensus 73 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 143 (302)
. .-+...+-.+..+|-+.|+.+++..+++++.+.. +-+..+.|.+...|+.. ++++|+.++.+....
T Consensus 112 ~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 112 Y--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred h--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 1 1123455556666666667777777777666665 33566666666666666 666666666665543
No 105
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.69 E-value=2.8e-08 Score=50.90 Aligned_cols=34 Identities=47% Similarity=0.897 Sum_probs=32.5
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHHhCCCcccH
Q 022131 1 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNV 34 (302)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 34 (302)
+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6999999999999999999999999999999984
No 106
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.67 E-value=3.3e-06 Score=58.49 Aligned_cols=96 Identities=14% Similarity=0.043 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022131 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229 (302)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 229 (302)
.....+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...++...+.+ +.+...+..+..+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 334444555556666666666666665543 4455555666666666666666666666655542 3344555555556
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 022131 230 LCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 230 ~~~~g~~~~a~~~~~~~~~ 248 (302)
+...|++++|...|+...+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666655
No 107
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.65 E-value=0.0001 Score=61.89 Aligned_cols=109 Identities=7% Similarity=0.035 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----------
Q 022131 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPD---LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP---------- 253 (302)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---------- 253 (302)
.|..+.+.|-..|+.+.|..+|++..+-..+-- ..+|......=.++.+++.|++++++.....-.|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 356677777788888888888888776533322 3455555555667778888888877765321111
Q ss_pred -------chhhHHHHHHHHhhcchHHHHHHHHHhccccCCCcccchhhh
Q 022131 254 -------QKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 295 (302)
Q Consensus 254 -------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 295 (302)
+...|+.+++.--..|-++....+++++.+-.+.-+....++
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny 517 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY 517 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 123455555666667778888888888877777666665554
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.64 E-value=7.1e-05 Score=69.04 Aligned_cols=268 Identities=10% Similarity=-0.014 Sum_probs=170.2
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCcccH----HHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc----CC-CCC
Q 022131 8 GWCKINRIDMAERFLGEMIERGVEPNV----VTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR----GI-EPD 78 (302)
Q Consensus 8 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~ 78 (302)
.+...|++++|...++.....-...+. ...+.+...+.. .|++++|...+++.... |. .+.
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~----------~G~~~~A~~~~~~al~~~~~~g~~~~~ 530 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC----------KGELARALAMMQQTEQMARQHDVYHYA 530 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence 456789999999999988763111111 223334444455 67778888887777642 11 111
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhc----CCC--c-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCC
Q 022131 79 VTSFSIVLHVYSRAHQPQLSLDKLNFMKEK----GIC--P-TVATYSSVVKCLCSCGRIEDAEELLGEMVRN----GVCP 147 (302)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~ 147 (302)
..+...+...+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+++.... +...
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 235566677888899999999998877543 221 1 2233445566677789999999999887653 1111
Q ss_pred ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---
Q 022131 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY-----NILIGMFMALNRMDMVREIWNDVKGSGLGPD--- 219 (302)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 219 (302)
....+..+...+...|++++|.+.+.+.............+ ...+..+...|+.+.|.+.+...........
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 23344556667889999999999998885531101111111 1122445568899999999877654211111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCc-hhhHHHHHHHHhhcchHHHHHHHHHhccccC
Q 022131 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLLPQ-KVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 220 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (302)
...+..+..++...|++++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+..
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 111345667788899999999999988653 33322 2355566678889999999998888766543
No 109
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.62 E-value=0.00025 Score=60.75 Aligned_cols=251 Identities=12% Similarity=0.038 Sum_probs=175.8
Q ss_pred cchHHHHHHHHHhCC-CcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 022131 15 IDMAERFLGEMIERG-VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93 (302)
Q Consensus 15 ~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 93 (302)
..++++.+++..+.+ ..|++..|-.+ -|+. .++++.|.+..++..+.+-..+...|..+.-.+...+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lal--q~A~----------~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k 527 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLAL--QYAE----------QRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK 527 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHH--HHHH----------HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 457788888887764 33444444333 3455 7789999999999999876778999999999999999
Q ss_pred CchhHHHHHHHHHhc-CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHH-------------------------------
Q 022131 94 QPQLSLDKLNFMKEK-GICPTVATYSSVVKCLCSCGRIEDAEELLGEMV------------------------------- 141 (302)
Q Consensus 94 ~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------------------------------- 141 (302)
++..|+.+.+..... |. |......-+..-...++.++++.....+.
T Consensus 528 r~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q 605 (799)
T KOG4162|consen 528 RLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQ 605 (799)
T ss_pred hhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccc
Confidence 999999998877554 21 00000000111111222222222111110
Q ss_pred --------------------HCC---------CC--CC------hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCC
Q 022131 142 --------------------RNG---------VC--PS------AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN 184 (302)
Q Consensus 142 --------------------~~~---------~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 184 (302)
..| .. |+ ...|......+...++.+++...+.+..... +..
T Consensus 606 ~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--~l~ 683 (799)
T KOG4162|consen 606 PTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--PLS 683 (799)
T ss_pred ccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--hhh
Confidence 001 00 11 1235566667788888899988888887775 667
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCchhhHHHHH
Q 022131 185 MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ--YFVEMIEKGLLPQKVTFETLY 262 (302)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~ 262 (302)
...|......+...|++.+|.+.|....... +-++....++..++.+.|+...|.. ++.++.+.+ +.+...|-.+.
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG 761 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLG 761 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 7788888888999999999999999888752 3356788899999999999888888 999998853 44788999999
Q ss_pred HHHhhcchHHHHHHHHHhccc
Q 022131 263 RGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~~~~ 283 (302)
..+...|+.++|.+.|+-..+
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHccchHHHHHHHHHHHh
Confidence 999999999999999876444
No 110
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.61 E-value=4.6e-06 Score=67.54 Aligned_cols=123 Identities=13% Similarity=0.191 Sum_probs=77.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 022131 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196 (302)
Q Consensus 117 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (302)
...++..+...++++.|..+++++.+.. |+ ....+++.+...++..+|.+++.+..... +.+...+..-...+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 3445555566667777777777776653 33 34446666666666667777777766553 445555565666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022131 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246 (302)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 246 (302)
+.++.+.|..+.+++... .+-+-.+|..|..+|...|+++.|+..+..+
T Consensus 246 ~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 777777777777777664 2223446777777777777777777666644
No 111
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=0.00018 Score=58.41 Aligned_cols=119 Identities=13% Similarity=-0.011 Sum_probs=70.5
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 022131 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203 (302)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (302)
+...|.+++|+..++.+... .+-|+..+......+...++.++|.+.++.+.... +........+..++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHH
Confidence 34456666666666666554 22345555555666666666666666666666653 2224455556666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022131 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246 (302)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 246 (302)
|..+++..... .+-|+..|..|..+|...|+..++.....+.
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 66666666554 3446666666666666666555555444433
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=6.4e-05 Score=60.91 Aligned_cols=154 Identities=10% Similarity=0.061 Sum_probs=125.2
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHH
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS-AETYNCFFKEY 159 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 159 (302)
-|..-+. +...|+++.|...+..+...- +-|...+......+.+.++.++|.+.++++.... |+ ...+..+..++
T Consensus 309 ~YG~A~~-~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~al 384 (484)
T COG4783 309 QYGRALQ-TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHH-HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHH
Confidence 3444443 456889999999999988763 4466677788899999999999999999999863 44 67777888999
Q ss_pred HccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 022131 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239 (302)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 239 (302)
.+.|++.++..++....... +.|+..|..|.++|...|+..++.....+ .+...|+++.|
T Consensus 385 l~~g~~~eai~~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A 444 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQA 444 (484)
T ss_pred HhcCChHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHH
Confidence 99999999999999999886 78899999999999999998888775544 45568999999
Q ss_pred HHHHHHHHHCCCCCchhhHH
Q 022131 240 CQYFVEMIEKGLLPQKVTFE 259 (302)
Q Consensus 240 ~~~~~~~~~~~~~p~~~~~~ 259 (302)
...+....+. +.++..+|.
T Consensus 445 ~~~l~~A~~~-~~~~~~~~a 463 (484)
T COG4783 445 IIFLMRASQQ-VKLGFPDWA 463 (484)
T ss_pred HHHHHHHHHh-ccCCcHHHH
Confidence 9999998776 445555543
No 113
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.60 E-value=5.8e-06 Score=57.25 Aligned_cols=94 Identities=12% Similarity=0.051 Sum_probs=47.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 022131 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196 (302)
Q Consensus 117 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (302)
...+...+...|++++|...++.+...+. .+...+..+...+...|++++|...+++..+.+ +.+...+..+...+.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHH
Confidence 34444444555555555555555544322 244444555555555555555555555554443 344444555555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 022131 197 ALNRMDMVREIWNDVKG 213 (302)
Q Consensus 197 ~~~~~~~a~~~~~~~~~ 213 (302)
..|++++|...|+...+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555554
No 114
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1.8e-05 Score=60.05 Aligned_cols=233 Identities=13% Similarity=0.134 Sum_probs=162.2
Q ss_pred CCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 022131 29 GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK 108 (302)
Q Consensus 29 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 108 (302)
|+.....-+++.+..+.+ ..++++|++++..-.++. +.+....+.|..+|....++..|-..++++-..
T Consensus 5 g~~i~EGeftaviy~lI~----------d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql 73 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIR----------DARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL 73 (459)
T ss_pred cccCCCCchHHHHHHHHH----------HhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344456677777778 889999999999888874 237788899999999999999999999999776
Q ss_pred CCCcCHHHHHH-HHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH--HHHccCCchHHHHHHHHHHhCCCCCCCH
Q 022131 109 GICPTVATYSS-VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK--EYRGRKDANGAMKLYRQMKEDGLCVPNM 185 (302)
Q Consensus 109 ~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 185 (302)
.|...-|.. -...+.+.+.+.+|+++...|.+. |....-..-+. ...+.+++..+..+.++....+ +.
T Consensus 74 --~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~A 144 (459)
T KOG4340|consen 74 --HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EA 144 (459)
T ss_pred --ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----cc
Confidence 344444432 345667788999999999988764 22222111111 2346788888888888776433 44
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC------------
Q 022131 186 HSYNILIGMFMALNRMDMVREIWNDVKGS-GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL------------ 252 (302)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------------ 252 (302)
.+.+.......+.|+.+.|.+-|+...+- |.. ....|+..+ ++.+.|+++.|++...+++++|++
T Consensus 145 d~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~te 222 (459)
T KOG4340|consen 145 DGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTE 222 (459)
T ss_pred chhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceec
Confidence 45555555566899999999999998874 444 445666444 456778999999999999887653
Q ss_pred -Cchh--------hHHHHH-------HHHhhcchHHHHHHHHHhccc
Q 022131 253 -PQKV--------TFETLY-------RGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 253 -p~~~--------~~~~l~-------~~~~~~g~~~~a~~~~~~~~~ 283 (302)
||.. .-+.++ ..+.+.|+++.|.+.+-.|..
T Consensus 223 giDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPP 269 (459)
T KOG4340|consen 223 GIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPP 269 (459)
T ss_pred cCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCC
Confidence 2211 122233 334467888888888777754
No 115
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.58 E-value=1.9e-06 Score=55.29 Aligned_cols=85 Identities=19% Similarity=0.354 Sum_probs=71.3
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCC-cccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 022131 5 LIYGWCKINRIDMAERFLGEMIERGV-EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83 (302)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (302)
-|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.+++..-. ..+...+-+.+.+|++|...+++|+..+|+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~--~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS--EDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc--hhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 45667777999999999999999999 999999999999988743221 333667788999999999999999999999
Q ss_pred HHHHHHHh
Q 022131 84 IVLHVYSR 91 (302)
Q Consensus 84 ~ll~~~~~ 91 (302)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987765
No 116
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=0.00016 Score=56.49 Aligned_cols=126 Identities=9% Similarity=0.033 Sum_probs=69.5
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc-----------
Q 022131 5 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR----------- 73 (302)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----------- 73 (302)
+..++.+.|++++|...|..+... -.|+...+..+.-++.- .|.+.+|.++-....+.
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~Fy----------Lg~Y~eA~~~~~ka~k~pL~~RLlfhla 131 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFY----------LGQYIEAKSIAEKAPKTPLCIRLLFHLA 131 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHH----------HHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 445667889999999999887764 34555566555555555 66666666655443221
Q ss_pred ---CC-----------CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHH-HHHhccCCHHHHHHHHH
Q 022131 74 ---GI-----------EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV-KCLCSCGRIEDAEELLG 138 (302)
Q Consensus 74 ---~~-----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~ 138 (302)
+- ..+...--+|.......-.+++|++++.+....+ |.....|..+ -+|.+..-++-+.+++.
T Consensus 132 hklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 132 HKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred HHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 00 0000111112222222334567777777776653 3444444433 45566666777777777
Q ss_pred HHHHC
Q 022131 139 EMVRN 143 (302)
Q Consensus 139 ~~~~~ 143 (302)
-..+.
T Consensus 210 vYL~q 214 (557)
T KOG3785|consen 210 VYLRQ 214 (557)
T ss_pred HHHHh
Confidence 66654
No 117
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.58 E-value=0.00015 Score=56.31 Aligned_cols=222 Identities=14% Similarity=0.082 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC--HHH------------HHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPD--VTS------------FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~--~~~------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 122 (302)
.|.+++|..-|+...+.....+ ... ....+..+...|+...|+..+..+++.. +-|...+..-..
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rak 197 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAK 197 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHH
Confidence 6778888888888887642111 111 2223445566788888998888888875 347888888888
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHH-------HH----
Q 022131 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN-------IL---- 191 (302)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~l---- 191 (302)
+|...|++..|+.=+....+... .++.++.-+-..+...|+.+.++...++..+.+ ||....- .+
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld---pdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLD---PDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC---cchhhHHHHHHHHHHHHHHH
Confidence 99999999999887777766532 466677777788888999999998888888773 5543221 11
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCc-hhhHHHHHHHH
Q 022131 192 --IGMFMALNRMDMVREIWNDVKGSGLGPDL---DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ-KVTFETLYRGL 265 (302)
Q Consensus 192 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 265 (302)
+......++|.++.+..+...+....... ..+..+-.++...|++.+|++...+..+ +.|| ..++.--..+|
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHH
Confidence 12234567777888877777765322122 2344455666778999999999999877 4565 77888888888
Q ss_pred hhcchHHHHHHHHHhccccC
Q 022131 266 IQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 266 ~~~g~~~~a~~~~~~~~~~~ 285 (302)
.-...++.|+.=++...+.+
T Consensus 352 l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hhhHHHHHHHHHHHHHHhcC
Confidence 88888898888887766543
No 118
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.57 E-value=0.00029 Score=59.22 Aligned_cols=94 Identities=13% Similarity=0.146 Sum_probs=63.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhc
Q 022131 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDL-DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268 (302)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 268 (302)
.+++.+-+.|+++.|...++...++ .|+. ..|..=.+.+.++|+++.|...+++..+.+ .||...=..-..-..++
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHc
Confidence 3556666777888888887777765 3432 344444567777888888888888776653 34554444556666777
Q ss_pred chHHHHHHHHHhccccCC
Q 022131 269 DMLRTWRRLKKKLDEESI 286 (302)
Q Consensus 269 g~~~~a~~~~~~~~~~~~ 286 (302)
++.++|.++...+.+.|.
T Consensus 453 n~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cccHHHHHHHHHhhhccc
Confidence 888888888777777665
No 119
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.57 E-value=0.00013 Score=61.13 Aligned_cols=85 Identities=13% Similarity=0.072 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 136 (302)
.+++++|++.|......+ +.|...+.-+.-.-++.++++..........+.. +.....|..+..++.-.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554443 2234444444444444445544444444444432 11233344444444445555555555
Q ss_pred HHHHHHC
Q 022131 137 LGEMVRN 143 (302)
Q Consensus 137 ~~~~~~~ 143 (302)
+++..+.
T Consensus 166 l~ef~~t 172 (700)
T KOG1156|consen 166 LEEFEKT 172 (700)
T ss_pred HHHHHHh
Confidence 5554443
No 120
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.56 E-value=9.4e-08 Score=48.55 Aligned_cols=32 Identities=34% Similarity=0.549 Sum_probs=30.8
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHHhCCCcc
Q 022131 1 MYTSLIYGWCKINRIDMAERFLGEMIERGVEP 32 (302)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 32 (302)
+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 69999999999999999999999999999987
No 121
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.55 E-value=1.9e-07 Score=47.76 Aligned_cols=33 Identities=42% Similarity=0.852 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCc
Q 022131 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254 (302)
Q Consensus 222 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 254 (302)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777665
No 122
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=2.9e-05 Score=60.38 Aligned_cols=240 Identities=13% Similarity=0.113 Sum_probs=150.2
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCC-HHHHH
Q 022131 5 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPD-VTSFS 83 (302)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 83 (302)
|+-.|.+.+++++|..+..++.-. .|-......+. .+..|.-..+ ...+.-|.+.|.-.-+.+..-| ..--.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv--~aalGQe~gS---reHlKiAqqffqlVG~Sa~ecDTIpGRQ 363 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV--FAALGQETGS---REHLKIAQQFFQLVGESALECDTIPGRQ 363 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH--HHHhhhhcCc---HHHHHHHHHHHHHhcccccccccccchH
Confidence 344577889999998887766422 22222222222 2222222222 4556667777766655543322 23445
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHcc
Q 022131 84 IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY-NCFFKEYRGR 162 (302)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 162 (302)
++.+++.-..++++++..+..+...=...|..- -.+..+++..|.+.+|+++|-++....++ +..+| ..+.++|.+.
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRN 441 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhc
Confidence 677777777888999999988877644434333 45788999999999999999888765554 44455 5566788999
Q ss_pred CCchHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 022131 163 KDANGAMKLYRQMKEDGLCVPNMHS-YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241 (302)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 241 (302)
+.++.|++++-.+... .+..+ ...+..-|.+.+.+--|.+.|+.+... .|++..|. |+-....-
T Consensus 442 kkP~lAW~~~lk~~t~----~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe---------GKRGACaG 506 (557)
T KOG3785|consen 442 KKPQLAWDMMLKTNTP----SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE---------GKRGACAG 506 (557)
T ss_pred CCchHHHHHHHhcCCc----hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC---------CccchHHH
Confidence 9999998887665432 23333 344556788999999999999988875 57776663 44444455
Q ss_pred HHHHHHHCCCCC-chhhHHHHHHHHhhc
Q 022131 242 YFVEMIEKGLLP-QKVTFETLYRGLIQS 268 (302)
Q Consensus 242 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 268 (302)
+|..+....-.| ...+..-++......
T Consensus 507 ~f~~l~~~~~~~~p~~~~rEVvhllr~~ 534 (557)
T KOG3785|consen 507 LFRQLANHKTDPIPISQMREVVHLLRMK 534 (557)
T ss_pred HHHHHHcCCCCCCchhHHHHHHHHHHhC
Confidence 566555443322 123344444444433
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.53 E-value=2e-05 Score=69.93 Aligned_cols=194 Identities=8% Similarity=0.029 Sum_probs=135.6
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHH---------------
Q 022131 73 RGIEP-DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL--------------- 136 (302)
Q Consensus 73 ~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~--------------- 136 (302)
.++.| +...+..|+..+...+++++|.++.+...+.... ....|-.+...+.+.++..++..+
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~v 102 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIV 102 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHH
Confidence 34443 5678999999999999999999999977766321 233344444466666666655544
Q ss_pred ---HHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022131 137 ---LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 137 ---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
...+.+. .-+..++..+..+|-+.|+.+++..+|+++.+.. +.|+.+.|.+...|... ++++|.+++.+...
T Consensus 103 e~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 103 EHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 2222221 1123567778888889999999999999999998 78899999999999999 99999999988776
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------C-CCCCchhhHHHHHHHHhhcchHHHH
Q 022131 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE------------------K-GLLPQKVTFETLYRGLIQSDMLRTW 274 (302)
Q Consensus 214 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------------------~-~~~p~~~~~~~l~~~~~~~g~~~~a 274 (302)
. +...+++..+.++|.++.. . |..--..++..+...|...++++++
T Consensus 178 ~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 178 R---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred H---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 4 3333344444444444443 2 2223344566666788888999999
Q ss_pred HHHHHhccccCCC
Q 022131 275 RRLKKKLDEESIT 287 (302)
Q Consensus 275 ~~~~~~~~~~~~~ 287 (302)
..+++.+.+..-.
T Consensus 243 i~iLK~iL~~~~~ 255 (906)
T PRK14720 243 IYILKKILEHDNK 255 (906)
T ss_pred HHHHHHHHhcCCc
Confidence 9999998775544
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.00011 Score=54.99 Aligned_cols=171 Identities=13% Similarity=0.125 Sum_probs=124.8
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 022131 66 VFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145 (302)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 145 (302)
+.+.+.......+......-...|...|++++|++...... +......=+..+.+..+.+-|...+++|.+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 34444444344343444445567889999999999887721 3334444455677888999999999999985
Q ss_pred CCChhhHHHHHHHHHc----cCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 022131 146 CPSAETYNCFFKEYRG----RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221 (302)
Q Consensus 146 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 221 (302)
.+..|.+.|..++.+ .+....|.-+|+++.+.- +|+..+.+-...++...|++++|..+++....+. .-++.
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpe 242 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPE 242 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHH
Confidence 466777777776653 456889999999999864 7999999999999999999999999999999874 34677
Q ss_pred HHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 022131 222 SYTMLIHGLCEKQKWKE-ACQYFVEMIE 248 (302)
Q Consensus 222 ~~~~li~~~~~~g~~~~-a~~~~~~~~~ 248 (302)
+...++.+-...|...+ ..+.+..++.
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 77777766666676544 4455666654
No 125
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.50 E-value=2.9e-07 Score=46.70 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 022131 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253 (302)
Q Consensus 221 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 253 (302)
.+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666555
No 126
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.46 E-value=2.5e-05 Score=54.73 Aligned_cols=115 Identities=12% Similarity=0.137 Sum_probs=64.3
Q ss_pred cCCchhHHHHHHHHHhcCCCcC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHccCCch
Q 022131 92 AHQPQLSLDKLNFMKEKGICPT---VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS--AETYNCFFKEYRGRKDAN 166 (302)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 166 (302)
.++...+...++.+.+.... + ....-.+...+...|++++|...|+.+......|. ......+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 56666666666666655321 2 22233344556666777777777777666542222 123344556666667777
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022131 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210 (302)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (302)
+|+..++..... ......+....+.+.+.|+.++|...|+.
T Consensus 103 ~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 776666553322 23344455556666666666666666654
No 127
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.46 E-value=1.4e-05 Score=64.84 Aligned_cols=127 Identities=13% Similarity=0.138 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 022131 80 TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159 (302)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (302)
.....|++.+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++++..+.. +-+......-.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 445667778888899999999999999874 44 44457888888889999999999998753 24666777777889
Q ss_pred HccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022131 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
.+.++++.|+.+.+++.+.. +.+..+|..|..+|...|+++.|+..++.+..
T Consensus 245 l~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999999985 56677999999999999999999999987653
No 128
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=0.00027 Score=58.73 Aligned_cols=224 Identities=10% Similarity=0.006 Sum_probs=128.9
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 022131 6 IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85 (302)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (302)
+..+...|++++|.+....++..+ +-+...+..=+-++.+ .+.+++|+.+.+.-... ..+..-+-.=
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq----------~~ky~~ALk~ikk~~~~--~~~~~~~fEK 85 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQ----------LDKYEDALKLIKKNGAL--LVINSFFFEK 85 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhh----------hhHHHHHHHHHHhcchh--hhcchhhHHH
Confidence 344566788999999999888775 4455556665667777 78888888555442211 1111111223
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCc
Q 022131 86 LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165 (302)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 165 (302)
..+..+.+..++|+..++-..+ .|..+...-...+.+.|++++|+.+|+.+.+++. ++. ..-+++-+..--.
T Consensus 86 AYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~---d~~~r~nl~a~~a 157 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQ---DEERRANLLAVAA 157 (652)
T ss_pred HHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chH---HHHHHHHHHHHHH
Confidence 4455678889999888883222 2344666677788899999999999999987654 221 1111111100000
Q ss_pred hHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------CCCCH-------HHHHHHHHH
Q 022131 166 NGAMKLYRQMKEDGLCVP--NMHSYNILIGMFMALNRMDMVREIWNDVKGSG-------LGPDL-------DSYTMLIHG 229 (302)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~li~~ 229 (302)
....+ .+..... .| +...+-.....+...|++.+|+++++...+.+ -.-+. ..--.+.-.
T Consensus 158 ~l~~~---~~q~v~~-v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 158 ALQVQ---LLQSVPE-VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred hhhHH---HHHhccC-CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 00111 1222222 22 22223333445667899999999998873211 11011 112234455
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCch
Q 022131 230 LCEKQKWKEACQYFVEMIEKGLLPQK 255 (302)
Q Consensus 230 ~~~~g~~~~a~~~~~~~~~~~~~p~~ 255 (302)
+...|+-.+|..++...++.. .+|.
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~-~~D~ 258 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRN-PADE 258 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhc-CCCc
Confidence 677899999999998888763 3444
No 129
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.44 E-value=7.8e-06 Score=66.60 Aligned_cols=122 Identities=16% Similarity=0.193 Sum_probs=66.7
Q ss_pred CChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 022131 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC-VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225 (302)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (302)
.+......++..+....+.+.+..++.+......+ ..-..|..++++.|...|..+.+.+++..=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34445555555555555555555555555444210 11122334666666666666666666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhc
Q 022131 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268 (302)
Q Consensus 226 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 268 (302)
|+..+.+.|++..|.++...|..++...+..|+..-+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666666665555555555555444444433
No 130
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.43 E-value=9.3e-06 Score=66.15 Aligned_cols=124 Identities=12% Similarity=0.101 Sum_probs=101.2
Q ss_pred CCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 022131 29 GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG--IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMK 106 (302)
Q Consensus 29 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 106 (302)
+.+.+......+++.+.. ..+++.+..++-+..... ...-..|.+++++.|.+.|..+.++.++..=.
T Consensus 61 ~~~vS~~dld~fvn~~~~----------~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~ 130 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVES----------KDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRL 130 (429)
T ss_pred CCCCcHHHHHHHHhhcCC----------HhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChh
Confidence 455667777777777777 778888888888887652 22234566799999999999999999999999
Q ss_pred hcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 022131 107 EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR 162 (302)
Q Consensus 107 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (302)
..|+-||..+++.+|+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 131 ~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 131 QYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988887767777777777776655
No 131
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.43 E-value=2.7e-05 Score=54.61 Aligned_cols=115 Identities=14% Similarity=0.057 Sum_probs=51.4
Q ss_pred cCCchHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCH
Q 022131 162 RKDANGAMKLYRQMKEDGLCVPN---MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL--DSYTMLIHGLCEKQKW 236 (302)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~ 236 (302)
.++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......|+. ...-.+...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 444555555555555443 122 112222334445555555555555555554311111 1222344455555555
Q ss_pred HHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHh
Q 022131 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK 280 (302)
Q Consensus 237 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (302)
++|+..++...... .....+......+...|+.++|...|++
T Consensus 102 d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555554422211 1223334444555555555555555543
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.40 E-value=0.00096 Score=58.27 Aligned_cols=228 Identities=12% Similarity=0.091 Sum_probs=148.6
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 022131 8 GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 87 (302)
Q Consensus 8 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (302)
.....+++.+|++....+.+. .|+. .|..++.++.... .|..++|..+++.....+.. |..|...+-.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r--------~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~ 85 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFR--------LGKGDEALKLLEALYGLKGT-DDLTLQFLQN 85 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHH--------hcCchhHHHHHhhhccCCCC-chHHHHHHHH
Confidence 345678899999999998876 4444 3444555544311 67778888888887766544 8889999999
Q ss_pred HHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-cCCc-
Q 022131 88 VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG-RKDA- 165 (302)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~- 165 (302)
+|.+.++.++|..+|+..... .|+......+..+|.|.+++.+-.++--++-+. .+-+...+=.+++.+.. ...+
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~ 162 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSEN 162 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCc
Confidence 999999999999999999876 467777888888999988887655444444433 22222222223333221 1111
Q ss_pred --------hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 022131 166 --------NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN-DVKGSGLGPDLDSYTMLIHGLCEKQKW 236 (302)
Q Consensus 166 --------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~ 236 (302)
.-|.+.++.+.+.++..-+..-...-.......|++++|.+++. ...+.-..-+...-+.-+..+...+++
T Consensus 163 ~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w 242 (932)
T KOG2053|consen 163 ELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRW 242 (932)
T ss_pred ccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcCh
Confidence 23556666666654212222222333344557788999999984 444433334455556667777888889
Q ss_pred HHHHHHHHHHHHCC
Q 022131 237 KEACQYFVEMIEKG 250 (302)
Q Consensus 237 ~~a~~~~~~~~~~~ 250 (302)
.+..++-.++...|
T Consensus 243 ~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 243 QELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888888764
No 133
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.37 E-value=4.8e-07 Score=44.74 Aligned_cols=30 Identities=43% Similarity=0.813 Sum_probs=28.3
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 022131 1 MYTSLIYGWCKINRIDMAERFLGEMIERGV 30 (302)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~ 30 (302)
+||++|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 699999999999999999999999998864
No 134
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=0.00067 Score=55.80 Aligned_cols=235 Identities=12% Similarity=0.045 Sum_probs=144.7
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH---
Q 022131 5 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS--- 81 (302)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--- 81 (302)
+..+.-+..+++.|++-+....... -++.-++..-.++.. .+.+.+....-+...+.|-. ...-
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e----------~~~~~~c~~~c~~a~E~gre-~rad~kl 296 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLE----------RGKYAECIELCEKAVEVGRE-LRADYKL 296 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHh----------ccHHHHhhcchHHHHHHhHH-HHHHHHH
Confidence 4555667778888888888877764 455556666667777 44555544444444443321 1122
Q ss_pred ----HHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 022131 82 ----FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157 (302)
Q Consensus 82 ----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 157 (302)
+..+..+|.+.++++.+...|++.......|+. ..+....+++....+...-.+... ..-.-.-..
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGn 366 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGN 366 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHH
Confidence 222334566667778888888876655433322 122334455555444444332221 111122255
Q ss_pred HHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 022131 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237 (302)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 237 (302)
.+.+.|++..|...|.++.... +.|...|....-+|.+.|.+..|+.-.+...+. -++....|..=..++....+++
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHH
Confidence 6678889999999999988886 778888999999999999999988888877775 2334445555555556667888
Q ss_pred HHHHHHHHHHHCCCCCchhhHHHHHHHHhh
Q 022131 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267 (302)
Q Consensus 238 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 267 (302)
+|.+.|++.++. .|+..-+.--+.-|..
T Consensus 444 kAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 444 KALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 888888888774 3555444444444443
No 135
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.32 E-value=0.00046 Score=63.79 Aligned_cols=237 Identities=11% Similarity=0.017 Sum_probs=150.5
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhC----CCc-ccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc----
Q 022131 3 TSLIYGWCKINRIDMAERFLGEMIER----GVE-PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR---- 73 (302)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---- 73 (302)
+.+...+...|++++|...+++.... |.. +...++..+...+.. .|+++.|...+++....
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~----------~G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA----------QGFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHh
Confidence 34455677899999999999888653 111 112334444555666 56677777776665442
Q ss_pred CCC--C-CHHHHHHHHHHHHhcCCchhHHHHHHHHHhc----CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 022131 74 GIE--P-DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK----GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC 146 (302)
Q Consensus 74 ~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 146 (302)
+.. + ....+..+...+...|++++|...+.+.... +.......+..+...+...|+.++|...+++.......
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~ 644 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN 644 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 211 1 2334455666777889999999998887553 21112334555667788899999999999887543111
Q ss_pred -CChhhH-----HHHHHHHHccCCchHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 022131 147 -PSAETY-----NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN--MHSYNILIGMFMALNRMDMVREIWNDVKGS---- 214 (302)
Q Consensus 147 -~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 214 (302)
.....+ ...+..+...|+.+.+...+..........+. ...+..+..++...|+.++|...+++....
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~ 724 (903)
T PRK04841 645 GRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL 724 (903)
T ss_pred ccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 111111 11224455688999999988776543210110 111345677788899999999999887653
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 022131 215 GLGPD-LDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 215 ~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 249 (302)
|..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 725 g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 725 RLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22222 245666777888999999999999999875
No 136
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.31 E-value=0.0016 Score=56.10 Aligned_cols=207 Identities=11% Similarity=0.077 Sum_probs=138.6
Q ss_pred CcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 022131 30 VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG 109 (302)
Q Consensus 30 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 109 (302)
+.-|...|..+--+... .|+++.+-+.|++.....+. ....|..+...+...|.-..|..+++.-....
T Consensus 319 ~qnd~ai~d~Lt~al~~----------~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~ 387 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSR----------CGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKS 387 (799)
T ss_pred hcchHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccc
Confidence 44466677777777777 88888888888887754332 56778888888888888888888888766554
Q ss_pred CCc-CHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHC--CC--CCChhhHHHHHHHHHcc-----------CCchHHHHHH
Q 022131 110 ICP-TVATYSSVVKCLC-SCGRIEDAEELLGEMVRN--GV--CPSAETYNCFFKEYRGR-----------KDANGAMKLY 172 (302)
Q Consensus 110 ~~~-~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~ 172 (302)
..| +...+-..-..|. +.+..++++.+-.+.... +. ...+..+..+.-+|... ....++++.+
T Consensus 388 ~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 388 EQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred cCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 233 3333333333343 456777777777666652 11 12233444444444321 1124577778
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 022131 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 249 (302)
++..+.+ +.|+.+.-.+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+...+.
T Consensus 468 e~av~~d--~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 468 EEAVQFD--PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHhcC--CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 8887776 34444444455566777889999999998888766678888988888888899999999988877643
No 137
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.30 E-value=2.1e-05 Score=50.70 Aligned_cols=77 Identities=13% Similarity=0.404 Sum_probs=50.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCchhhHHHH
Q 022131 191 LIGMFMALNRMDMVREIWNDVKGSGL-GPDLDSYTMLIHGLCEKQ--------KWKEACQYFVEMIEKGLLPQKVTFETL 261 (302)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~l 261 (302)
.|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444455667777777777777666 667777777766655432 234566677777777777777777777
Q ss_pred HHHHhh
Q 022131 262 YRGLIQ 267 (302)
Q Consensus 262 ~~~~~~ 267 (302)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 776654
No 138
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.30 E-value=0.0001 Score=62.98 Aligned_cols=186 Identities=15% Similarity=0.160 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 136 (302)
.+.|.+|+.+++.+.... .-..-|..+...|+..|+++.|.++|.+.- .++-.|.+|.+.|+|++|.++
T Consensus 745 akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHH
Confidence 567778888888777653 234456777888888899988888886531 345567888999999998888
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 022131 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216 (302)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (302)
-++... .......|.+-..-.-.+|++.+|.+++-.+. .|+ ..|.+|-+.|..+...++.++-...
T Consensus 814 a~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~h~d-- 879 (1636)
T KOG3616|consen 814 AEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD-- 879 (1636)
T ss_pred HHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHhChh--
Confidence 766543 33455566666666677888888887775443 454 3477788888888877777654321
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHH
Q 022131 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL 277 (302)
Q Consensus 217 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 277 (302)
.-..|...+..-+-..|+...|..-|-+..+ |.+-++.|..++.|++|.++
T Consensus 880 -~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 880 -HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred -hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 1223455566666667777777766655432 33344444445555554444
No 139
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=0.0013 Score=54.13 Aligned_cols=88 Identities=17% Similarity=0.029 Sum_probs=63.5
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCH-HHHHHHH
Q 022131 8 GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDV-TSFSIVL 86 (302)
Q Consensus 8 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll 86 (302)
+.+..|+++.|+..|.+..... ++|...|..-..+|++ .+++++|++=-.+-.+. .|+. ..|+...
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~----------~~~~~~al~da~k~~~l--~p~w~kgy~r~G 77 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYAS----------LGSYEKALKDATKTRRL--NPDWAKGYSRKG 77 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHH----------HhhHHHHHHHHHHHHhc--CCchhhHHHHhH
Confidence 4567899999999999998874 4588889889999999 66776666554444443 4443 4667777
Q ss_pred HHHHhcCCchhHHHHHHHHHhc
Q 022131 87 HVYSRAHQPQLSLDKLNFMKEK 108 (302)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~ 108 (302)
.++.-.|++++|+.-|.+-++.
T Consensus 78 aa~~~lg~~~eA~~ay~~GL~~ 99 (539)
T KOG0548|consen 78 AALFGLGDYEEAILAYSEGLEK 99 (539)
T ss_pred HHHHhcccHHHHHHHHHHHhhc
Confidence 7777777777777777666554
No 140
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00026 Score=62.62 Aligned_cols=133 Identities=11% Similarity=0.061 Sum_probs=75.4
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 022131 7 YGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86 (302)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (302)
......+-+++|..+|+... .+....+.++.-. +.+++|.+.-++.. .+..|..+.
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~i-------------~~ldRA~efAe~~n------~p~vWsqla 1111 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIENI-------------GSLDRAYEFAERCN------EPAVWSQLA 1111 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHHh-------------hhHHHHHHHHHhhC------ChHHHHHHH
Confidence 34556677888888887653 3455555665532 33444444333322 345666666
Q ss_pred HHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCch
Q 022131 87 HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166 (302)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 166 (302)
.+-.+.|...+|++-|-+. .|+..|..+++...+.|.+++-.+.+...++..-.|.. -+.++-+|++.++..
T Consensus 1112 kAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1112 KAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLT 1183 (1666)
T ss_pred HHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHH
Confidence 6666666666665544332 24556666666666666666666666666555443333 245556666666655
Q ss_pred HHHHH
Q 022131 167 GAMKL 171 (302)
Q Consensus 167 ~a~~~ 171 (302)
+..++
T Consensus 1184 elE~f 1188 (1666)
T KOG0985|consen 1184 ELEEF 1188 (1666)
T ss_pred HHHHH
Confidence 54443
No 141
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00082 Score=59.68 Aligned_cols=129 Identities=14% Similarity=0.145 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 136 (302)
.+-+++|..+|+... .+....+.|+.- .+..+.|.++-++.. .+..|..+..+-.+.|.+.+|++-
T Consensus 1061 ~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred hhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHH
Confidence 556677777776643 245555555543 344555555444431 345677777777777777777665
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 022131 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208 (302)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (302)
|-+. .|+..|..+++...+.|.+++..+++....+... .|... +.|+-+|++.++..+.++++
T Consensus 1127 yika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1127 YIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-Cccch--HHHHHHHHHhchHHHHHHHh
Confidence 5433 3666777777777777877777777777666654 45443 55666777777666555543
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.28 E-value=0.002 Score=56.37 Aligned_cols=223 Identities=13% Similarity=0.099 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV--YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAE 134 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 134 (302)
.+++.+|++....+... -|+.. |...+.+ ..+.|..++|..+++.....+.. |..|...+-.+|...++.++|.
T Consensus 22 ~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 67788888888888776 34433 3333333 45789999999999988777655 8899999999999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC----------HHHH
Q 022131 135 ELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR----------MDMV 204 (302)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a 204 (302)
.+|++..+. -|+......+..+|.+.+.+.+-.+.--++.+.- +.+...+-++++.....-. ..-|
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~--pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF--PKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 999999886 4678888889999999988877655555555542 4455566666665554311 3356
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhcc
Q 022131 205 REIWNDVKGSG-LGPDLDSYTMLIHGLCEKQKWKEACQYFV-EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282 (302)
Q Consensus 205 ~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (302)
.+.++.+.+.+ .--+..-.......+-..|++++|++++. ..-+.-..-+...-+.-+.-+...+++.+..++..++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 66677766653 11122222223344456889999999994 44343222233333445566667777777777776666
Q ss_pred ccCCC
Q 022131 283 EESIT 287 (302)
Q Consensus 283 ~~~~~ 287 (302)
..|-.
T Consensus 254 ~k~~D 258 (932)
T KOG2053|consen 254 EKGND 258 (932)
T ss_pred HhCCc
Confidence 65554
No 143
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=0.00013 Score=62.99 Aligned_cols=235 Identities=15% Similarity=0.107 Sum_probs=138.9
Q ss_pred HHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHH--HHHHHHHhcCCCCCHHHHHHHH
Q 022131 9 WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE--KVFDEMRVRGIEPDVTSFSIVL 86 (302)
Q Consensus 9 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~ll 86 (302)
|...|+.+.|.+-.+.++ +...|..+.+.|.+..+++-+.-..|....|. +.+++..+.|- .+=....
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~----e~eakvA 807 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE----EDEAKVA 807 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc----chhhHHH
Confidence 455688888887776665 44689999999999766665555555555443 34555555432 1212233
Q ss_pred HHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCch
Q 022131 87 HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166 (302)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 166 (302)
......|.+++|+.+|.+.++. ..|=..|-..|.+++|+++-+.=-+.. -..||......+-..++.+
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHH
Confidence 3345678888999888887764 334455666788888887765433221 2345555555555666666
Q ss_pred HHHHHHHHH----------HhCCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------
Q 022131 167 GAMKLYRQM----------KEDGL--------CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG------------- 215 (302)
Q Consensus 167 ~a~~~~~~~----------~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------- 215 (302)
.|++.|++. ..... .+.|...|..-.+.....|+++.|+.++....+.-
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~ 955 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTD 955 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCch
Confidence 666665532 11110 02234445555555666788888888877765420
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHH
Q 022131 216 -------LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTW 274 (302)
Q Consensus 216 -------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 274 (302)
-..|....-.+.+.|-..|++.+|..+|.+.. +|...|+.|...+.-++.
T Consensus 956 kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 956 KAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHH
Confidence 01244455566666777777777777776653 345555555555544443
No 144
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.25 E-value=0.00084 Score=51.37 Aligned_cols=184 Identities=6% Similarity=0.029 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHH---HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 022131 79 VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY---SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155 (302)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (302)
...+-.....+.+.|++++|.+.|+.+...... +...- -.+..++.+.+++++|...+++..+..+......+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 333333445566789999999999999886433 23332 45667788999999999999999887443333344444
Q ss_pred HHHHHc--cC---------------C---chHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 022131 156 FKEYRG--RK---------------D---ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215 (302)
Q Consensus 156 ~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (302)
+.+.+. .+ + ...|...|+.+.+. |-...-..+|..-+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHH-
Confidence 444331 10 1 12333444444444 22233344444444443321
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCchhhHHHHHHHHhhcchHHHHHHHHHhccc
Q 022131 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK--GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 216 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
=...--.+..-|.+.|.+..|..-++.+++. +.+........+..+|...|..++|..+.+.+..
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 0111124566788899999999999999875 3333456677788999999999999888776543
No 145
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.22 E-value=0.0001 Score=57.71 Aligned_cols=129 Identities=12% Similarity=0.145 Sum_probs=67.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 022131 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE-YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194 (302)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (302)
+|..+++..-+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|..+|+...+.- +.+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 455556666666666666666666654321 223333333333 222444555666666665553 4555556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 195 FMALNRMDMVREIWNDVKGSGLGPD---LDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
+...++.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+..+.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554 2222 13566666666666666666666666655
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.21 E-value=0.00012 Score=49.20 Aligned_cols=97 Identities=9% Similarity=-0.028 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCC--cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC--CChhhHHHHHH
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFMKEKGIC--PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC--PSAETYNCFFK 157 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 157 (302)
+-.+...+.+.|++++|.+.+..+.+.... .....+..+..++.+.|++++|...|+.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444555555666666666555543211 11233444555555556666666666555543211 11334444555
Q ss_pred HHHccCCchHHHHHHHHHHhC
Q 022131 158 EYRGRKDANGAMKLYRQMKED 178 (302)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~ 178 (302)
++...|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555555
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.21 E-value=5.9e-05 Score=48.13 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=35.7
Q ss_pred HHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 022131 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236 (302)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 236 (302)
..+...|++++|...+.+..+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+...|++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 33344444444444444444332 2222333344444444444444444444443321 11223344444444444444
Q ss_pred HHHHHHHHHH
Q 022131 237 KEACQYFVEM 246 (302)
Q Consensus 237 ~~a~~~~~~~ 246 (302)
+.|...+...
T Consensus 85 ~~a~~~~~~~ 94 (100)
T cd00189 85 EEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 148
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.20 E-value=4.2e-05 Score=59.91 Aligned_cols=131 Identities=16% Similarity=0.192 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 022131 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM-FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228 (302)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 228 (302)
.+|..+++...+.+..+.|..+|.+..+.+. .+..+|...... +...++.+.|..+|+...+. ++.+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 4688899999999999999999999997653 344555555554 33357777799999998886 6678899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCch---hhHHHHHHHHhhcchHHHHHHHHHhcccc
Q 022131 229 GLCEKQKWKEACQYFVEMIEKGLLPQK---VTFETLYRGLIQSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 229 ~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (302)
.+...|+.+.|..+|++.... +.++. ..|...++-=.+.|+++.+..+.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999865 33333 48888998888999999999999887764
No 149
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.18 E-value=0.00011 Score=53.46 Aligned_cols=93 Identities=16% Similarity=0.267 Sum_probs=67.9
Q ss_pred cccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----------------C
Q 022131 31 EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH----------------Q 94 (302)
Q Consensus 31 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------~ 94 (302)
..+-.+|..+++.+.+..... .|.++-....++.|.+.|+..|..+|+.||..+=+.. +
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~R-----RGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Q 118 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRR-----RGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQ 118 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCC-----cChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHH
Confidence 457888999998888753111 6788888888999999999999999999998876421 2
Q ss_pred chhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccC
Q 022131 95 PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128 (302)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 128 (302)
-+-|++++++|...|+-||..++..+++.+++.+
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 2446667777777777777777777777766554
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.16 E-value=3.5e-06 Score=41.55 Aligned_cols=29 Identities=41% Similarity=0.770 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 022131 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKG 250 (302)
Q Consensus 222 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 250 (302)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.15 E-value=0.00018 Score=48.36 Aligned_cols=95 Identities=12% Similarity=-0.062 Sum_probs=39.3
Q ss_pred HHHHHHHccCCchHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHH
Q 022131 154 CFFKEYRGRKDANGAMKLYRQMKEDGLC-VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG--PDLDSYTMLIHGL 230 (302)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~ 230 (302)
.....+...|++++|...+..+...... +.....+..+..++.+.|+++.|...++.+...... .....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3333444444444444444444433200 001223333444444555555555555544432100 1123344444444
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 022131 231 CEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 231 ~~~g~~~~a~~~~~~~~~ 248 (302)
.+.|++++|...++++.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHhCChHHHHHHHHHHHH
Confidence 445555555555555444
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.14 E-value=8.2e-05 Score=47.43 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=44.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 022131 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL 198 (302)
Q Consensus 119 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (302)
.+...+...|++++|...+++..+... .+...+..+...+...+++++|.+.+....... +.+..++..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHHH
Confidence 334444445555555555555544321 222344444455555555555555555554443 23334455555555555
Q ss_pred CCHHHHHHHHHHHHh
Q 022131 199 NRMDMVREIWNDVKG 213 (302)
Q Consensus 199 ~~~~~a~~~~~~~~~ 213 (302)
|+.+.|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 555555555555443
No 153
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.14 E-value=0.00043 Score=61.13 Aligned_cols=216 Identities=11% Similarity=0.043 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHH
Q 022131 58 KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137 (302)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 137 (302)
++...++..|-+...... .=...|..|...|....+...|.+.|....+.+. .+..........|++..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHH
Confidence 334555555555554421 1346788899999988899999999999988763 37778899999999999999999984
Q ss_pred HHHHHCCC-CCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 022131 138 GEMVRNGV-CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216 (302)
Q Consensus 138 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (302)
-..-+... ..-...|....-.|...++..++..-|+...+.. +.|...|..+..+|.+.|.+..|.++|.+....
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 33333211 0112233334445678888999999999998886 789999999999999999999999999988774
Q ss_pred CCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHC------CCCCchhhHHHHHHHHhhcchHHHHHHHHHh
Q 022131 217 GPDLDSYTMLIH--GLCEKQKWKEACQYFVEMIEK------GLLPQKVTFETLYRGLIQSDMLRTWRRLKKK 280 (302)
Q Consensus 217 ~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (302)
.|+. +|...-. .-+..|.+.+|+..+...... +..--..++..+...+.-.|-..++..++++
T Consensus 626 rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek 696 (1238)
T KOG1127|consen 626 RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK 696 (1238)
T ss_pred CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 4443 3333222 236789999999998887643 1222234444444445555555555555544
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.13 E-value=0.00014 Score=59.03 Aligned_cols=88 Identities=11% Similarity=-0.059 Sum_probs=42.4
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 022131 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202 (302)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (302)
.+...|++++|+..|++.++... .+...|..+..+|...|++++|+..++++.... +.+...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCHH
Confidence 33444555555555555554422 234444444445555555555555555554443 334444444444555555555
Q ss_pred HHHHHHHHHHh
Q 022131 203 MVREIWNDVKG 213 (302)
Q Consensus 203 ~a~~~~~~~~~ 213 (302)
+|...|++...
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 155
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.10 E-value=0.00052 Score=58.91 Aligned_cols=138 Identities=15% Similarity=0.197 Sum_probs=98.7
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 022131 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200 (302)
Q Consensus 121 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (302)
+.+..+...|.+|+.+++.+.+... ...-|..+...|+..|+++.|.++|.+.- .++-.|.+|.+.|+
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhcccc
Confidence 4445566778888888888877633 34557777888889999988888886442 34567888899999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHh
Q 022131 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK 280 (302)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (302)
|..|.++-.+... .......|-.-..-+-.+|++.+|.+++-... .|+ ..|..|-+.|..+...++..+
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 9988887766543 34455666666666778888888888776542 343 346778888888888888765
Q ss_pred c
Q 022131 281 L 281 (302)
Q Consensus 281 ~ 281 (302)
-
T Consensus 876 ~ 876 (1636)
T KOG3616|consen 876 H 876 (1636)
T ss_pred h
Confidence 3
No 156
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.09 E-value=8.7e-05 Score=54.02 Aligned_cols=93 Identities=20% Similarity=0.380 Sum_probs=75.4
Q ss_pred hHHHHHHHHhc-----CCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhh-------HHHHHHHHHHHHH
Q 022131 2 YTSLIYGWCKI-----NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF-------EKTIRNAEKVFDE 69 (302)
Q Consensus 2 y~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~-------~~~~~~a~~~~~~ 69 (302)
|..++..|.+. |.++-....+..|.+-|+.-|..+|+.||+.+=+ |.+.+...+ ..+-+-|++++++
T Consensus 50 F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp~n~fQ~~F~hyp~Qq~c~i~lL~q 128 (228)
T PF06239_consen 50 FLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVPRNFFQAEFMHYPRQQECAIDLLEQ 128 (228)
T ss_pred HHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcccccHHHHHhccCcHHHHHHHHHHHH
Confidence 45566666544 7788888889999999999999999999999876 554433222 4456789999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCc
Q 022131 70 MRVRGIEPDVTSFSIVLHVYSRAHQP 95 (302)
Q Consensus 70 ~~~~~~~~~~~~~~~ll~~~~~~~~~ 95 (302)
|...|+-||..++..++..|++.+.+
T Consensus 129 ME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 129 MENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHcCCCCcHHHHHHHHHHhccccHH
Confidence 99999999999999999999877654
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.06 E-value=0.0013 Score=56.02 Aligned_cols=143 Identities=12% Similarity=0.026 Sum_probs=78.4
Q ss_pred CCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCc--------hhHHH
Q 022131 29 GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP--------QLSLD 100 (302)
Q Consensus 29 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--------~~a~~ 100 (302)
+.+.+...|...+++........ .+....|..+|++..+... -....+..+..++.....+ ..+.+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~-----~~~~~~A~~lle~Ai~ldP-~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~ 405 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGD-----AKSLNKASDLLEEILKSEP-DFTYAQAEKALADIVRHSQQPLDEKQLAALST 405 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 34567778888888755432222 5567788888888887732 1344555544433322111 12222
Q ss_pred HHHHHHhc-CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCC
Q 022131 101 KLNFMKEK-GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179 (302)
Q Consensus 101 ~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (302)
........ ..+.+...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+.+.....
T Consensus 406 ~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 406 ELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 22222221 122344555555545555566666666666666653 455666666666666666666666666665553
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.06 E-value=0.00061 Score=53.61 Aligned_cols=199 Identities=13% Similarity=0.118 Sum_probs=114.5
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhc----CCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCC--hh
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFMKEK----GICP-TVATYSSVVKCLCSCGRIEDAEELLGEMVRN----GVCPS--AE 150 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~ 150 (302)
|......|...+++++|...|.+..+. +-+. -...|.....+|.+. ++++|+..+++..+. |- |+ ..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~-~~~aA~ 115 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR-FSQAAK 115 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc-HHHHHH
Confidence 334445566677777777766655322 1111 122344444444444 777777777766542 22 22 34
Q ss_pred hHHHHHHHHHcc-CCchHHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCH
Q 022131 151 TYNCFFKEYRGR-KDANGAMKLYRQMKED----GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG-----PDL 220 (302)
Q Consensus 151 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~ 220 (302)
.+..+...|... |+++.|.+.|.+..+. +....-..++..+...+.+.|++++|.++|+++...... .+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 566667777777 8999999998887543 210111345567778889999999999999988764322 122
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCc--hhhHHHHHHHHhhc--chHHHHHHHHHhcc
Q 022131 221 D-SYTMLIHGLCEKQKWKEACQYFVEMIEK--GLLPQ--KVTFETLYRGLIQS--DMLRTWRRLKKKLD 282 (302)
Q Consensus 221 ~-~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~~--g~~~~a~~~~~~~~ 282 (302)
. .|-..+-++...||+..|...+++.... ++..+ ......|+.++-.. ..++.+..-|+.+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 2 2334445667789999999999988654 22222 24556667776543 34555655555544
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.04 E-value=1.3e-05 Score=50.36 Aligned_cols=18 Identities=6% Similarity=0.185 Sum_probs=7.0
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 022131 192 IGMFMALNRMDMVREIWN 209 (302)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~ 209 (302)
..++.+.|++++|..+++
T Consensus 32 a~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp HHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 333333333333333333
No 160
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.0013 Score=57.25 Aligned_cols=241 Identities=13% Similarity=0.089 Sum_probs=142.0
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHHhC-CC--------cccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHH
Q 022131 1 MYTSLIYGWCKINRIDMAERFLGEMIER-GV--------EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMR 71 (302)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~-~~--------~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 71 (302)
+|..+.+.|.+..+.+-|.-.+-.|... |. .|+. +-..+.-.... .|.+++|+.+|++-+
T Consensus 759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e-~eakvAvLAie----------LgMlEeA~~lYr~ck 827 (1416)
T KOG3617|consen 759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE-DEAKVAVLAIE----------LGMLEEALILYRQCK 827 (1416)
T ss_pred HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc-hhhHHHHHHHH----------HhhHHHHHHHHHHHH
Confidence 4778888899998888887777776532 11 1111 11111111223 788899999998877
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHH----------H
Q 022131 72 VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM----------V 141 (302)
Q Consensus 72 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----------~ 141 (302)
.. ..|=+.|...|.+++|.++-+.=-+..+ ..||......+-..++.+.|++.|++. .
T Consensus 828 R~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL 895 (1416)
T KOG3617|consen 828 RY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML 895 (1416)
T ss_pred HH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH
Confidence 54 3344556678889998887665433322 346666666666777888887777643 1
Q ss_pred HCC---------CCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCC-------------------CCCCHHHHHHHHH
Q 022131 142 RNG---------VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL-------------------CVPNMHSYNILIG 193 (302)
Q Consensus 142 ~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~~l~~ 193 (302)
... -..|...|......+-..|+.+.|+.+|......-. ...|......|.+
T Consensus 896 ~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR 975 (1416)
T KOG3617|consen 896 KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLAR 975 (1416)
T ss_pred HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHH
Confidence 111 123455566666666777888888887776543210 1224444556677
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcc-hHH
Q 022131 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD-MLR 272 (302)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~ 272 (302)
.|...|++.+|..+|.+.. ++...|+.|-.+ ++++-+.-+..| . ...-.....+.|...| ..+
T Consensus 976 ~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEn-d~~d~L~nlal~--s----~~~d~v~aArYyEe~g~~~~ 1039 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKEN-DMKDRLANLALM--S----GGSDLVSAARYYEELGGYAH 1039 (1416)
T ss_pred HhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhc-CHHHHHHHHHhh--c----CchhHHHHHHHHHHcchhhh
Confidence 7777777777777776654 455566655444 333322222222 1 1122334455566666 778
Q ss_pred HHHHHHHh
Q 022131 273 TWRRLKKK 280 (302)
Q Consensus 273 ~a~~~~~~ 280 (302)
+|..++.+
T Consensus 1040 ~AVmLYHk 1047 (1416)
T KOG3617|consen 1040 KAVMLYHK 1047 (1416)
T ss_pred HHHHHHHh
Confidence 88887765
No 161
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.02 E-value=0.00034 Score=48.59 Aligned_cols=88 Identities=10% Similarity=0.009 Sum_probs=40.6
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH
Q 022131 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201 (302)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (302)
..+...|++++|..+|+.+....+ -+..-|..|..++-..|++++|+..|....... +.|+..+-.+..++...|+.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCH
Confidence 333444555555555554444322 233444444444444455555555554444443 33444444444444455555
Q ss_pred HHHHHHHHHHH
Q 022131 202 DMVREIWNDVK 212 (302)
Q Consensus 202 ~~a~~~~~~~~ 212 (302)
+.|.+.|+...
T Consensus 120 ~~A~~aF~~Ai 130 (157)
T PRK15363 120 CYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHHH
Confidence 55554444443
No 162
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.02 E-value=0.0057 Score=50.79 Aligned_cols=209 Identities=8% Similarity=0.026 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 022131 60 IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA---HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136 (302)
Q Consensus 60 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 136 (302)
-+++.++++.....-...+..+|..+...--.. +..+.....+++++..-..--..+|..+|+...+..-++.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 355566666655432233334444333221111 12556667777776553222345688889999999999999999
Q ss_pred HHHHHHCCCCC-ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 022131 137 LGEMVRNGVCP-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215 (302)
Q Consensus 137 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (302)
|.+..+.+..+ +....+++|..||. ++.+-|.++|+--.+.- ..++.-....++.+...++-..+..+|++....+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf--~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF--GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc--CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999887666 66777888876654 57789999998877663 3445555677888889999999999999999886
Q ss_pred CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C--CCCchhhHHHHHHHHhhcchH
Q 022131 216 LGPD--LDSYTMLIHGLCEKQKWKEACQYFVEMIEK-G--LLPQKVTFETLYRGLIQSDML 271 (302)
Q Consensus 216 ~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~--~~p~~~~~~~l~~~~~~~g~~ 271 (302)
++|+ ...|..++.-=..-|+...+.++-+++... . ..+....-..+++-|.-.+..
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence 6654 478999999989999999999998887543 1 223334445556656555543
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.02 E-value=0.0011 Score=56.50 Aligned_cols=146 Identities=13% Similarity=0.004 Sum_probs=97.9
Q ss_pred CCCcCHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC--------CchHHHHHHHHH
Q 022131 109 GICPTVATYSSVVKCLCSC-----GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK--------DANGAMKLYRQM 175 (302)
Q Consensus 109 ~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~ 175 (302)
+.+.+...|...+++.... ++...|..+|++..+... -....+..+..++.... +...+.+...+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP-~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP-DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3456778888888875432 236788999999888643 23444444433332221 122333333333
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCch
Q 022131 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255 (302)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 255 (302)
......+.+...+..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++... +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 3321114556777777667777899999999999999864 6888899999999999999999999999876 46666
Q ss_pred hhHH
Q 022131 256 VTFE 259 (302)
Q Consensus 256 ~~~~ 259 (302)
.||.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 6654
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.00 E-value=0.00094 Score=48.31 Aligned_cols=63 Identities=10% Similarity=-0.071 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPT--VATYSSVVKCLCSCGRIEDAEELLGEMVRN 143 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 143 (302)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444555555555666666666655554322211 234445555555555555555555555443
No 165
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0067 Score=50.90 Aligned_cols=266 Identities=10% Similarity=0.074 Sum_probs=150.2
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHH---hcccCCcchh---h-HHHHHHHHHHHHHHHhcCCCC
Q 022131 5 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVC---RRASLHPSER---F-EKTIRNAEKVFDEMRVRGIEP 77 (302)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~~~~---~-~~~~~~a~~~~~~~~~~~~~~ 77 (302)
|...+...|+.++|.+++...++.. ++|........+.+. ....+....- . ......+..+...+... -.-
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~ 307 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQ 307 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHH
Confidence 3445678899999999999998874 445443333322222 2111111000 0 00111111111111111 011
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC--GRIEDAEELLGEMVRNGVCPSAETYNCF 155 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (302)
....-+.++..|. +..+.+.++-..... ..| ...+..++..+.+. .....+..++...-+............+
T Consensus 308 ~i~~N~~lL~l~t--nk~~q~r~~~a~lp~--~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~ 382 (652)
T KOG2376|consen 308 AIYRNNALLALFT--NKMDQVRELSASLPG--MSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLR 382 (652)
T ss_pred HHHHHHHHHHHHh--hhHHHHHHHHHhCCc--cCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHH
Confidence 1222233444442 222333333332221 122 33455555554433 2467778888777766443345566677
Q ss_pred HHHHHccCCchHHHHHHH--------HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHH---
Q 022131 156 FKEYRGRKDANGAMKLYR--------QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS--GLGPDLDS--- 222 (302)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~--- 222 (302)
+......|+++.|.+++. .+.+.+. . +.+...+...+.+.++-+.|..++...... .-.+....
T Consensus 383 aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~-~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~ 459 (652)
T KOG2376|consen 383 AQLKISQGNPEVALEILSLFLESWKSSILEAKH-L--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLS 459 (652)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc-C--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHh
Confidence 788899999999999999 6666543 3 345566777778888877777777765541 11122222
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhcc
Q 022131 223 -YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282 (302)
Q Consensus 223 -~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (302)
+.-+...-.+.|+-++|..+++++.+. -++|..+...++.+|++. +.+.|..+-+++.
T Consensus 460 ~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 460 LMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 333334446779999999999999885 367888899999888876 4577777766654
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.00 E-value=1.6e-05 Score=49.84 Aligned_cols=81 Identities=15% Similarity=0.193 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIE-PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 135 (302)
.++++.|+.+++++.+.... |+...+-.+..++.+.|++++|..+++. .+.+.. +......+..++.+.|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 35667777777777765321 2344455567777777777777777766 322211 23344445667777777777777
Q ss_pred HHHH
Q 022131 136 LLGE 139 (302)
Q Consensus 136 ~~~~ 139 (302)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7664
No 167
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.99 E-value=0.0044 Score=55.19 Aligned_cols=217 Identities=10% Similarity=-0.011 Sum_probs=144.2
Q ss_pred cchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 022131 15 IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ 94 (302)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 94 (302)
...|...|-+..+... -=...|..|-..|.. ..+...|.+.|+...+.+ ..+..........|++..+
T Consensus 474 ~~~al~ali~alrld~-~~apaf~~LG~iYrd----------~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~ 541 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-SLAPAFAFLGQIYRD----------SDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEEST 541 (1238)
T ss_pred HHHHHHHHHHHHhccc-chhHHHHHHHHHHHH----------HHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhcccc
Confidence 5556665555554421 123467777777766 568888999999988875 3477888999999999999
Q ss_pred chhHHHHHHHHHhcCC-CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHH
Q 022131 95 PQLSLDKLNFMKEKGI-CPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173 (302)
Q Consensus 95 ~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 173 (302)
++.|..+.-..-+... ..-...|....-.|...++...|+.-|+...+..+ .|...|..+..+|...|++..|.++|.
T Consensus 542 we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~ 620 (1238)
T KOG1127|consen 542 WEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFT 620 (1238)
T ss_pred HHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhh
Confidence 9999988433332211 11122344455567788999999999999988755 588999999999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022131 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS------GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246 (302)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 246 (302)
+..... +.+...---..-.-+..|.+.++...+..+... +...-..++-.+...+...|-..+|.+++++-
T Consensus 621 kAs~Lr--P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 621 KASLLR--PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred hhHhcC--cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 988774 223222222233445678899999888876642 11222344444444444445444555555443
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.98 E-value=0.00046 Score=56.14 Aligned_cols=92 Identities=9% Similarity=-0.053 Sum_probs=68.0
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCc
Q 022131 86 LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165 (302)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 165 (302)
...+...|+++.|+..|.++.+... .+...|..+..+|.+.|++++|+..++++.+... .+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 4455667788888888888877653 3566777777788888888888888888877643 3566777777778888888
Q ss_pred hHHHHHHHHHHhCC
Q 022131 166 NGAMKLYRQMKEDG 179 (302)
Q Consensus 166 ~~a~~~~~~~~~~~ 179 (302)
++|...|++..+..
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888877764
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.97 E-value=0.00033 Score=50.46 Aligned_cols=63 Identities=19% Similarity=0.058 Sum_probs=29.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHccCCchHHHHHHHHHHhC
Q 022131 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP--SAETYNCFFKEYRGRKDANGAMKLYRQMKED 178 (302)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (302)
.+..+...+...|++++|+..|++.......+ ...++..+...+...|++++|...++.....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444445555555555555554332111 1224444445555555555555555555443
No 170
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.97 E-value=0.0072 Score=50.24 Aligned_cols=185 Identities=11% Similarity=0.073 Sum_probs=131.8
Q ss_pred hhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHH
Q 022131 96 QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG---RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY 172 (302)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 172 (302)
+++..+++.....-...+..+|..+...=-..- ..+.....++++...-..--.-+|..+|+.-.+..-.+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555544322223333433332211111 25566677777765533333457888898888988999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 022131 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252 (302)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 252 (302)
.++.+.+....++.+.++++..++ .++..-|.++|+--.++ ...++.--...+.-+.+.|+-..+..+|++....++.
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 999999874447788888888776 46788999999986554 3334455567888888999999999999999988666
Q ss_pred Cch--hhHHHHHHHHhhcchHHHHHHHHHhcc
Q 022131 253 PQK--VTFETLYRGLIQSDMLRTWRRLKKKLD 282 (302)
Q Consensus 253 p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (302)
||. ..|..++.-=..-|++..+.++-+++.
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 654 789999999999999999998877654
No 171
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.95 E-value=0.0015 Score=45.48 Aligned_cols=98 Identities=8% Similarity=-0.070 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 022131 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228 (302)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 228 (302)
....-.+...+...|++++|.++|+.+..-. +-+..-|..|.-++-..|++++|.+.|....... +-|+..+-.+..
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3444455566789999999999999999886 6777888899999999999999999999998875 357888899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 022131 229 GLCEKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 229 ~~~~~g~~~~a~~~~~~~~~~ 249 (302)
++...|+.+.|.+.|+..+..
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999988764
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.89 E-value=0.00059 Score=49.16 Aligned_cols=98 Identities=9% Similarity=-0.129 Sum_probs=70.5
Q ss_pred ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 022131 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP-NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226 (302)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 226 (302)
....|..+...+...|++++|...+++.......++ ...++..+...+...|+.++|...++..... .+....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-~~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHH
Confidence 355667777788888999999999999876632111 2357888888999999999999999988875 23345556666
Q ss_pred HHHHH-------HcCCHHHHHHHHHHH
Q 022131 227 IHGLC-------EKQKWKEACQYFVEM 246 (302)
Q Consensus 227 i~~~~-------~~g~~~~a~~~~~~~ 246 (302)
...+. ..|+++.|...+++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 66666 777877666666554
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.88 E-value=0.0021 Score=46.44 Aligned_cols=86 Identities=14% Similarity=0.064 Sum_probs=45.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 022131 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS--AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193 (302)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (302)
.+..+...+...|++++|...|++..+....+. ...+..+...+...|++++|...+.+..... +.+...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 445555555666666666666666654322211 2445555555566666666666666555543 334444444555
Q ss_pred HHHhcCCHHH
Q 022131 194 MFMALNRMDM 203 (302)
Q Consensus 194 ~~~~~~~~~~ 203 (302)
.+...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 5555554433
No 174
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.86 E-value=0.002 Score=47.93 Aligned_cols=176 Identities=9% Similarity=0.067 Sum_probs=99.7
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCC--CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 022131 84 IVLHVYSRAHQPQLSLDKLNFMKEKGI--CPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161 (302)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (302)
.....+...|++++|.+.|+.+..... +......-.++.++.+.|++++|...+++..+.-+......+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 344556678899999999999887632 223445667788888999999999999998876332222233333333322
Q ss_pred cCCchHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 022131 162 RKDANGAMKLYRQMKEDGLCVPN-------MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234 (302)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 234 (302)
........ .. ..| ...+..++.-|-...-..+|...+..+.+. =...--.+...|.+.|
T Consensus 90 ~~~~~~~~-------~~---~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 90 YKQIPGIL-------RS---DRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHHHHH--------T---T---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT
T ss_pred HHhCccch-------hc---ccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcc
Confidence 11111110 00 111 123344444444555555665555554432 1111223567788999
Q ss_pred CHHHHHHHHHHHHHCCCCCch----hhHHHHHHHHhhcchHHHHH
Q 022131 235 KWKEACQYFVEMIEKGLLPQK----VTFETLYRGLIQSDMLRTWR 275 (302)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~ 275 (302)
.+..|..-++.+++. -|+. .....++.++.+.|..+.+.
T Consensus 156 ~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 156 KYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999999875 3433 45677888898888877443
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.78 E-value=0.0045 Score=48.75 Aligned_cols=164 Identities=13% Similarity=0.138 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHh----cCCCcC--HHHHHHHHHHHhcc-CCHHHHHHHHHHHHHC----CC-CCC
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFMKE----KGICPT--VATYSSVVKCLCSC-GRIEDAEELLGEMVRN----GV-CPS 148 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~-~~~ 148 (302)
.|.....+|.+. ++++|...+++..+ .| .|+ ...+..+...|... |++++|.+.|++..+. +. ..-
T Consensus 77 ~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a 154 (282)
T PF14938_consen 77 AYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSA 154 (282)
T ss_dssp HHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhH
Confidence 344444444333 55555555554432 22 112 23455666677777 8888888888876643 21 011
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCC----CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC--
Q 022131 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC----VPNMH-SYNILIGMFMALNRMDMVREIWNDVKGS--GLGPD-- 219 (302)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~-- 219 (302)
...+..+...+.+.|++++|.++|+++...... ..+.. .+...+-++...|+.-.|...+++.... ++..+
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E 234 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE 234 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 345667777888999999999999988765321 11222 2334455667788999999999988754 23223
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHH
Q 022131 220 LDSYTMLIHGLCE--KQKWKEACQYFVEM 246 (302)
Q Consensus 220 ~~~~~~li~~~~~--~g~~~~a~~~~~~~ 246 (302)
......|+.++-. ...+..++.-|+.+
T Consensus 235 ~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 235 YKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 3455667777643 34566666666655
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.78 E-value=0.0036 Score=41.88 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=5.5
Q ss_pred CCHHHHHHHHHHHHH
Q 022131 128 GRIEDAEELLGEMVR 142 (302)
Q Consensus 128 ~~~~~a~~~~~~~~~ 142 (302)
|+.++|+.+|++...
T Consensus 15 G~~~~Ai~~Y~~Al~ 29 (120)
T PF12688_consen 15 GREEEAIPLYRRALA 29 (120)
T ss_pred CCHHHHHHHHHHHHH
Confidence 333333333333333
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.76 E-value=0.0067 Score=43.29 Aligned_cols=159 Identities=13% Similarity=0.116 Sum_probs=107.5
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (302)
++.+..+.=|++...+-..+-. ...|+...-..|..+....|+..+|...|++....-...|......+.++....++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~--~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 62 LLMALQQKLDPERHLREATEEL--AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHH--hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence 3344444445554444333322 23567777777888888889999999998888876566677778888888888888
Q ss_pred chHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 022131 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244 (302)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 244 (302)
+..+...++.+.+.+.--.++.+-..+.+.+...|...+|+..|+...+. -|+...-......+.+.|+.+++..-+.
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 88888888888776421122334456677788888888888888888875 4555554445556667777666665554
Q ss_pred HHH
Q 022131 245 EMI 247 (302)
Q Consensus 245 ~~~ 247 (302)
.+.
T Consensus 218 ~v~ 220 (251)
T COG4700 218 AVV 220 (251)
T ss_pred HHH
Confidence 443
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.76 E-value=0.00063 Score=51.99 Aligned_cols=102 Identities=18% Similarity=0.133 Sum_probs=75.8
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 022131 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD 202 (302)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (302)
-..+.+++.+|+..|.+.++... -|.+.|..-..+|++.|+++.|++-.+.....+ +....+|..|-.+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHH
Confidence 35567888888888888887643 466777777788888888888887777777665 556778888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022131 203 MVREIWNDVKGSGLGPDLDSYTMLIHG 229 (302)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~li~~ 229 (302)
+|.+.|++.++ +.|+-.+|-.=+..
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 88888888777 46766666544443
No 179
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.75 E-value=0.0037 Score=41.84 Aligned_cols=106 Identities=18% Similarity=0.159 Sum_probs=73.5
Q ss_pred HHHHHHHccCCchHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHH
Q 022131 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPN--MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD----LDSYTMLI 227 (302)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li 227 (302)
.+..++-..|+.++|..+|++....|. ... ...+..+.+.+...|++++|..++++..... |+ ......+.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGL-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHH
Confidence 345567788999999999999998875 222 3456667788888999999999999887641 33 23333344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHh
Q 022131 228 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266 (302)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 266 (302)
.++...|+.++|++.+-.... ++...|..-|..|.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 566788999999998877654 33335555555544
No 180
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.012 Score=44.52 Aligned_cols=130 Identities=10% Similarity=0.001 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH-----HH
Q 022131 83 SIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF-----FK 157 (302)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~ 157 (302)
+.++..+.-.+.+.-.+..+.+..+...+.++.....+++.-.+.||.+.|...|++..+..-..+..+.+.+ ..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 4444455555556666666666666554555555666666666666666666666655543222222222222 22
Q ss_pred HHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022131 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214 (302)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (302)
.|.-.+++..+...+.++...+ +.|....|.-.-+..-.|+..+|.+.++.|...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555556666665555554 344444444444444455666666666666653
No 181
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.68 E-value=0.011 Score=45.38 Aligned_cols=170 Identities=11% Similarity=0.013 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhc--c----
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTS---FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS--C---- 127 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~---- 127 (302)
.|++++|.+.|+.+...-..+ ... .-.+..++.+.++++.|...+++..+....-....+...+.+.+. .
T Consensus 45 ~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~ 123 (243)
T PRK10866 45 DGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSA 123 (243)
T ss_pred CCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhh
Confidence 688999999999999864332 222 245678889999999999999999887433233334444444321 1
Q ss_pred -----------CC---HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 022131 128 -----------GR---IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193 (302)
Q Consensus 128 -----------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (302)
.| ..+|+..|+.+++. -|+.. -..+|...+..+... .-.. -..+..
T Consensus 124 ~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~-------------ya~~A~~rl~~l~~~----la~~-e~~ia~ 183 (243)
T PRK10866 124 LQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQ-------------YTTDATKRLVFLKDR----LAKY-ELSVAE 183 (243)
T ss_pred hhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCCh-------------hHHHHHHHHHHHHHH----HHHH-HHHHHH
Confidence 12 23566667776665 23332 123333333333221 0011 124566
Q ss_pred HHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022131 194 MFMALNRMDMVREIWNDVKGS--GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247 (302)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 247 (302)
.|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+.
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 777888888888888887764 333345666677788888888888887776553
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.66 E-value=0.00031 Score=41.92 Aligned_cols=51 Identities=10% Similarity=0.139 Sum_probs=27.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
..|++++|.+.|+.+... .+-+...+..+..+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566666666655554 122455555555666666666666666665554
No 183
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.66 E-value=0.018 Score=45.36 Aligned_cols=223 Identities=11% Similarity=0.051 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHH-HHHHHHHHhccCCHHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT-YSSVVKCLCSCGRIEDAEE 135 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~ 135 (302)
.+++.+|+.-|....+.+ +.+-.++-.-...|...|+...|+.=+...++. +||-.. -..-...+.+.|.+++|..
T Consensus 51 ~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~ 127 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAEA 127 (504)
T ss_pred hhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHHH
Confidence 778888888888877652 213334444456788889999999989988886 566332 2233456778999999999
Q ss_pred HHHHHHHCCCCCC------------hh--hHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH
Q 022131 136 LLGEMVRNGVCPS------------AE--TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201 (302)
Q Consensus 136 ~~~~~~~~~~~~~------------~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (302)
=|+.+++....-. .. .....+..+...|+...++.....+.+.. +-|...+..-..+|...|++
T Consensus 128 DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wda~l~~~Rakc~i~~~e~ 205 (504)
T KOG0624|consen 128 DFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PWDASLRQARAKCYIAEGEP 205 (504)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cchhHHHHHHHHHHHhcCcH
Confidence 9999998743211 11 12234555678899999999999999985 67888888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHH-------HH------HHHhhc
Q 022131 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET-------LY------RGLIQS 268 (302)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-------l~------~~~~~~ 268 (302)
..|+.=++...+.. ..+..++--+-..+...|+.+.++...++..+ +.||....-. +. ....+.
T Consensus 206 k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~ 282 (504)
T KOG0624|consen 206 KKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEE 282 (504)
T ss_pred HHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99998888877763 34667777788888899999999999999877 4566532211 11 223345
Q ss_pred chHHHHHHHHHhccccCCC
Q 022131 269 DMLRTWRRLKKKLDEESIT 287 (302)
Q Consensus 269 g~~~~a~~~~~~~~~~~~~ 287 (302)
++|.++..--+...+....
T Consensus 283 ~~~t~cle~ge~vlk~ep~ 301 (504)
T KOG0624|consen 283 KHWTECLEAGEKVLKNEPE 301 (504)
T ss_pred hhHHHHHHHHHHHHhcCCc
Confidence 6666777666666665544
No 184
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.011 Score=45.64 Aligned_cols=113 Identities=15% Similarity=0.137 Sum_probs=84.3
Q ss_pred CCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHH
Q 022131 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN---RMDMVREIWNDVKGSGLGPDLDS 222 (302)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~ 222 (302)
+-|...|..|..+|...|+.+.|..-|.+..+.. +++...+..+..++.... ...++..+|+++... -+-|+.+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL-DPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-CCccHHH
Confidence 3578889999999999999999999998888875 567777777766655432 355788888888876 2346777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHH
Q 022131 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263 (302)
Q Consensus 223 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 263 (302)
...|...+...|++.+|...|+.|.+. -|....+..++.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 777888888899999999999998875 344444555554
No 185
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.005 Score=47.27 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=84.3
Q ss_pred HHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCch
Q 022131 87 HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166 (302)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 166 (302)
.-..+.+++++|+..|.+.++... -|.+-|..-..+|.+.|.++.|++=.+..+..+. ....+|..|-.+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHH
Confidence 346678899999999999999853 3777888899999999999999998888887643 35678999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 022131 167 GAMKLYRQMKEDGLCVPNMHSYNILIGM 194 (302)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (302)
+|.+.|++..+. .|+-.+|-.=+..
T Consensus 167 ~A~~aykKaLel---dP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALEL---DPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhcc---CCCcHHHHHHHHH
Confidence 999999999887 4665566544443
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.63 E-value=0.0003 Score=41.93 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=24.2
Q ss_pred cCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022131 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
.|++++|.++|+++.... +.+...+..+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555555554443 33444444455555555555555555555444
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.63 E-value=0.0006 Score=40.22 Aligned_cols=56 Identities=13% Similarity=0.216 Sum_probs=32.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 192 IGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
...+...|++++|...|+.+.+.. +-+...+..+..++...|++++|...|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666666666652 22455556666666666666666666666654
No 188
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.58 E-value=0.0038 Score=43.77 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCchhhHH
Q 022131 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE-----KGLLPQKVTFE 259 (302)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~ 259 (302)
....++..+...|+++.|..+.+.+... -+.+...|..+|.+|...|+...|.+.|+++.+ .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4455666667777777777777777765 344666777777777777777777777776643 37777765543
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.58 E-value=0.00052 Score=41.04 Aligned_cols=64 Identities=11% Similarity=0.132 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccC-CHHHHHHHHHHHHH
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG-RIEDAEELLGEMVR 142 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~ 142 (302)
++.+|..+...+...|++++|+..|++..+... .+...|..+..++.+.| ++++|+..+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 355666666777777777777777777766642 25556666667777776 57777777766654
No 190
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.015 Score=43.94 Aligned_cols=139 Identities=11% Similarity=0.067 Sum_probs=104.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHH----
Q 022131 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI---- 192 (302)
Q Consensus 117 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~---- 192 (302)
-+.+++...-.|.+.-...++.++++...+.++.....+++.-.+.|+.+.|...|+...+... +.|..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhh
Confidence 3556666777788888999999999987777888999999999999999999999998876654 55555555544
Q ss_pred -HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHH
Q 022131 193 -GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE 259 (302)
Q Consensus 193 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 259 (302)
..|.-.+++..|...+.++.... +.|+..-|.=.-+..-.|+..+|++.++.|++. .|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 34555678888888888887752 335555555555556678999999999999874 45554444
No 191
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.53 E-value=0.016 Score=49.49 Aligned_cols=248 Identities=12% Similarity=0.143 Sum_probs=133.1
Q ss_pred HHHHHhcCCcchHHHHHH---------HHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 022131 6 IYGWCKINRIDMAERFLG---------EMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIE 76 (302)
Q Consensus 6 i~~~~~~g~~~~a~~~~~---------~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 76 (302)
+..|...|.+++|.++-- .+... ..+.-.++..-.+|.+.. ...+-+...-++++.++|-.
T Consensus 563 m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVR--------dl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 563 MYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVR--------DLRYLELISELEERKKRGET 632 (1081)
T ss_pred chhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHh--------ccHHHHHHHHHHHHHhcCCC
Confidence 445667777777765421 11111 123333444455555522 22334455556788888877
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCc-CHHHHH-----HHHHHHhccCCHHHHHHHHHHHHHCCCCCChh
Q 022131 77 PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP-TVATYS-----SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE 150 (302)
Q Consensus 77 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 150 (302)
|+... +...++-.|.+.+|-++|.+- |... -...|+ -..+-+...|..++-..+.++-.+- ..+..
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~k 704 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW--ARNIK 704 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH--hhhcC
Confidence 87754 334455566777777666543 2110 001111 1122333444444333333322111 00000
Q ss_pred hHHHHHHHHHccCCchHHHHH-------------HHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 022131 151 TYNCFFKEYRGRKDANGAMKL-------------YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217 (302)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 217 (302)
-=.+....+...|+.++|..+ -+++. ..+..+...+...+.+...+..|.++|.+|-+.
T Consensus 705 ePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld-----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--- 776 (1081)
T KOG1538|consen 705 EPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD-----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--- 776 (1081)
T ss_pred CcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc-----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---
Confidence 001223334455555554443 22222 234455666666666777788888888887643
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCch-----------hhHHHHHHHHhhcchHHHHHHHHHhccccCC
Q 022131 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK-----------VTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286 (302)
Q Consensus 218 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 286 (302)
..++..+...+++++|..+.++.-+ +.||. .-|.-.-.+|.++|+..+|.++++++....+
T Consensus 777 ------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 777 ------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred ------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 3467778888999999998887654 34443 2344455788899999999999998876554
Q ss_pred C
Q 022131 287 T 287 (302)
Q Consensus 287 ~ 287 (302)
.
T Consensus 849 ~ 849 (1081)
T KOG1538|consen 849 A 849 (1081)
T ss_pred h
Confidence 3
No 192
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.53 E-value=0.0011 Score=46.60 Aligned_cols=74 Identities=12% Similarity=0.207 Sum_probs=50.2
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 022131 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG-----SGLGPDLDSY 223 (302)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 223 (302)
..+...++..+...|+++++..+...+.... +.+...+..+|.++...|+...|.+.|+.+.. .|+.|+..+-
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3455666667777888888888888888776 67778888888888888888888888877643 4777777654
Q ss_pred H
Q 022131 224 T 224 (302)
Q Consensus 224 ~ 224 (302)
.
T Consensus 140 ~ 140 (146)
T PF03704_consen 140 A 140 (146)
T ss_dssp H
T ss_pred H
Confidence 3
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.019 Score=44.35 Aligned_cols=114 Identities=15% Similarity=0.070 Sum_probs=90.6
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC---CchHHHHHHHHHHhCCCCCCCHHH
Q 022131 111 CPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK---DANGAMKLYRQMKEDGLCVPNMHS 187 (302)
Q Consensus 111 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 187 (302)
+-|...|-.|...|...|+.+.|..-|.+..+... +++..+..+..++.... ...++..+|+++.... +-|+.+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--CccHHH
Confidence 44888999999999999999999999999988633 56777777776654332 4468999999999987 678888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022131 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229 (302)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 229 (302)
...|...+...|++.+|...|+.|.+.. |....+..+|..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 8888899999999999999999999973 333344444443
No 194
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.50 E-value=0.034 Score=44.43 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 022131 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228 (302)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 228 (302)
..+.+..+.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-.++-.. +-++..|..++.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~ 245 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVE 245 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHH
Confidence 3455666777788888888887766553 68899999999999999999988876432 224578999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHH
Q 022131 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279 (302)
Q Consensus 229 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 279 (302)
+|...|+..+|..+..++ + +..-+..|.+.|++.+|.+..-
T Consensus 246 ~~~~~~~~~eA~~yI~k~------~----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPKI------P----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHCCCHHHHHHHHHhC------C----hHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999888772 1 1334555666677766665543
No 195
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.48 E-value=0.00075 Score=39.80 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=25.7
Q ss_pred HHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022131 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
.+...|++++|...|+++.+.. +-+...+..+..++...|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555443 33444444444555555555555555554443
No 196
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.47 E-value=0.04 Score=44.63 Aligned_cols=168 Identities=15% Similarity=0.107 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcC---CCcCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHCCCCCChhhH
Q 022131 79 VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG---ICPTVATYSSVVKCLCS---CGRIEDAEELLGEMVRNGVCPSAETY 152 (302)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 152 (302)
..+...++-+|....+++..+++.+.+.... +.-+...-....-++.+ .|+.++|.+++..+......+++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3444556667999999999999999998762 22233333445556666 89999999999997666667888999
Q ss_pred HHHHHHHHc---------cCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHH---H-HHHhCC
Q 022131 153 NCFFKEYRG---------RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM----DMVREIW---N-DVKGSG 215 (302)
Q Consensus 153 ~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~---~-~~~~~~ 215 (302)
..+.+.|-. ....++|...|.+.-+. .||..+=..++..+...|.- .+..++- . .+.+.|
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~---~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI---EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC---CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 888887732 22356788888877665 35544333333333333331 1222222 1 122233
Q ss_pred C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 022131 216 L---GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 216 ~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 249 (302)
. ..+-..+..++.+++-.|+.++|.+..++|.+.
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2 234455678889999999999999999999865
No 197
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.46 E-value=0.0034 Score=42.43 Aligned_cols=52 Identities=13% Similarity=0.014 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCchhhHHHHHHHHh
Q 022131 215 GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-GLLPQKVTFETLYRGLI 266 (302)
Q Consensus 215 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 266 (302)
...|+..+..+++.+|+.+|++..|+++.+...+. +++.+..+|..|++=+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35678888888888888888888888888887654 67777788888876333
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.46 E-value=0.026 Score=42.09 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=11.1
Q ss_pred HHHHHccCCchHHHHHHHHHHhC
Q 022131 156 FKEYRGRKDANGAMKLYRQMKED 178 (302)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~ 178 (302)
.+.|.+.|.+..|..-++.+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH
Confidence 34445555555555555555544
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.44 E-value=0.0011 Score=39.56 Aligned_cols=61 Identities=11% Similarity=0.155 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 022131 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ-KWKEACQYFVEMI 247 (302)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~ 247 (302)
..|..+...+...|++++|...|++..+.. +-+...|..+..++...| ++++|++.+++.+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444444444444444444444431 223344444444444444 3444444444443
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.42 E-value=0.022 Score=40.73 Aligned_cols=135 Identities=10% Similarity=0.064 Sum_probs=106.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CChhhHH
Q 022131 75 IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC-PSAETYN 153 (302)
Q Consensus 75 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 153 (302)
..|+...--.|..+..+.|+..+|...|++...--+.-|......+.++....+++..|...++.+.+.... -++.+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 467777778899999999999999999999987555667888888999999999999999999999876321 1344566
Q ss_pred HHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022131 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212 (302)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (302)
.+.+.+...|.+..|..-|+..... .|+...-......+.+.|+.+++..-+..+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 7788999999999999999999887 5666655555556677787776665444443
No 201
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.42 E-value=0.0044 Score=41.92 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhc---------------CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK---------------GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR 142 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 142 (302)
|..++..++.++++.|+.+....+++..-.- ...|+..+..+++.+|+..|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4556777778888888877777777655221 1234555555555555555555555555555543
Q ss_pred C-CCCCChhhHHHHHHHH
Q 022131 143 N-GVCPSAETYNCFFKEY 159 (302)
Q Consensus 143 ~-~~~~~~~~~~~l~~~~ 159 (302)
. +++.+..+|..|++-.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 3 4444455555555443
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.36 E-value=0.0083 Score=46.43 Aligned_cols=101 Identities=7% Similarity=0.032 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCC-CCCCHHHHHH
Q 022131 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP--SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL-CVPNMHSYNI 190 (302)
Q Consensus 114 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ 190 (302)
...|...+..+.+.|++++|...|+.+.+..+.. ....+..+...|...|++++|...|..+.+... .+.....+-.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3345555555566678888888888877753211 134666777778888888888888888876521 0122444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 022131 191 LIGMFMALNRMDMVREIWNDVKGS 214 (302)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~ 214 (302)
+...+...|+.+.|..+++.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566677788888888888887764
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.31 E-value=0.012 Score=45.65 Aligned_cols=103 Identities=13% Similarity=0.093 Sum_probs=79.7
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHH
Q 022131 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN----MHSYNILIGMFMALNRMDMVREIWNDVKGSG--LGPDLDS 222 (302)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~ 222 (302)
...|...+....+.|++++|...|+.+.+.. |+ ...+..+..+|...|++++|...|+.+.+.- -+.....
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 4456665655567899999999999999874 44 3577889999999999999999999998641 1123455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchh
Q 022131 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256 (302)
Q Consensus 223 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 256 (302)
+-.+..++...|+.++|..+|+.+++. .|+..
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 566677788999999999999999874 46554
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.30 E-value=0.0074 Score=48.56 Aligned_cols=265 Identities=15% Similarity=0.074 Sum_probs=156.2
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCcccHH----HHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHH--Hhc--CCC-CC
Q 022131 8 GWCKINRIDMAERFLGEMIERGVEPNVV----TYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEM--RVR--GIE-PD 78 (302)
Q Consensus 8 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~--~~~-~~ 78 (302)
-+|+.|+....+.+|+...+.|.. |.. .|..|-.+|.- .+++++|++...-= ..+ |-+ -.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfy----------L~DY~kAl~yH~hDltlar~lgdklGE 94 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFY----------LKDYEKALKYHTHDLTLARLLGDKLGE 94 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhh----------HhhHHHHHhhhhhhHHHHHHhcchhcc
Confidence 478999999999999999988643 333 34444445555 78888888764321 111 100 01
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHH----HHHhcCCC-cCHHHHHHHHHHHhccCC--------------------HHHH
Q 022131 79 VTSFSIVLHVYSRAHQPQLSLDKLN----FMKEKGIC-PTVATYSSVVKCLCSCGR--------------------IEDA 133 (302)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~----~~~~~~~~-~~~~~~~~ll~~~~~~~~--------------------~~~a 133 (302)
......|...+--.|.+++|.-.-. -..+.|-. .....+-.+.+.|...|+ ++.|
T Consensus 95 AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~A 174 (639)
T KOG1130|consen 95 AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENA 174 (639)
T ss_pred ccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHH
Confidence 2233334444555666666654322 22222211 123344556666654432 2334
Q ss_pred HHHHHHHHH----CCC-CCChhhHHHHHHHHHccCCchHHHHHHHHHH----hCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 022131 134 EELLGEMVR----NGV-CPSAETYNCFFKEYRGRKDANGAMKLYRQMK----EDGLCVPNMHSYNILIGMFMALNRMDMV 204 (302)
Q Consensus 134 ~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (302)
.++|.+-.+ .|- -.....|..+-..|.-.|+++.++...+.-. +-|-.......+..+..++.-.|+++.|
T Consensus 175 v~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A 254 (639)
T KOG1130|consen 175 VKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELA 254 (639)
T ss_pred HHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhH
Confidence 444443221 111 0123456666666777888888877655432 2222123345677888899999999999
Q ss_pred HHHHHHHHh----CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCchhhHHHHHHHHhhcchHHHH
Q 022131 205 REIWNDVKG----SGL-GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-----GLLPQKVTFETLYRGLIQSDMLRTW 274 (302)
Q Consensus 205 ~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~a 274 (302)
.+.++.... .|- .....+.-+|...|.-..++++|+.++.+-..- ...-....+.+|..++...|..++|
T Consensus 255 ~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 255 IEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence 998876443 221 223455666777887788899999988764321 1233456788899999999999999
Q ss_pred HHHHHhccc
Q 022131 275 RRLKKKLDE 283 (302)
Q Consensus 275 ~~~~~~~~~ 283 (302)
..+.+.-.+
T Consensus 335 l~fae~hl~ 343 (639)
T KOG1130|consen 335 LYFAELHLR 343 (639)
T ss_pred HHHHHHHHH
Confidence 888765444
No 205
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.22 E-value=0.042 Score=47.47 Aligned_cols=157 Identities=11% Similarity=0.086 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhc-CCCcCHHHHHHHHHHHhccCCHHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK-GICPTVATYSSVVKCLCSCGRIEDAEE 135 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~ 135 (302)
-|++++|+++|-+|..++ ..+..+.+.|++-.+.++++.--.. .-..-...|+.+...++....+++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655442 2344555666665555444331000 001113356666666666666666666
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 022131 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215 (302)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (302)
.|..-... ...+.++.+..++++...+-+.+ +.+....-.+.+++.+.|.-++|.+.+-+...
T Consensus 818 yY~~~~~~---------e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-- 880 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL-- 880 (1189)
T ss_pred HHHhccch---------HhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhccC--
Confidence 66543321 12344445555555544444443 34445566777888888888888776654322
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022131 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246 (302)
Q Consensus 216 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 246 (302)
| ...+..|...+++.+|.++.++.
T Consensus 881 --p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 881 --P-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred --c-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 23456677777787777776654
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.16 E-value=0.0057 Score=36.92 Aligned_cols=54 Identities=11% Similarity=0.168 Sum_probs=30.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
.|.+.++++.|.++++.+...+ +.+...+.....++...|++++|.+.++...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4555566666666666665542 23445555555556666666666666666654
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.11 E-value=0.0027 Score=38.98 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----C-CCCc-hhhHHHHHHHHhhcchHHHHHHHHHh
Q 022131 222 SYTMLIHGLCEKQKWKEACQYFVEMIEK----G-LLPQ-KVTFETLYRGLIQSDMLRTWRRLKKK 280 (302)
Q Consensus 222 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (302)
+++.+...|...|++++|+..|++..+. | -.|+ ..++..+..++...|++++|.+++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555555555555555555554422 1 0111 23444455555555555555555554
No 208
>PRK15331 chaperone protein SicA; Provisional
Probab=97.08 E-value=0.054 Score=38.15 Aligned_cols=86 Identities=12% Similarity=0.053 Sum_probs=47.0
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 022131 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204 (302)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (302)
...|++++|..+|+-+...++ -+..-|..|..++-..+++++|...|......+ +.|+..+-....++...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCHHHH
Confidence 345666666666666555433 344445555555555666666666665554443 23333344455555666666666
Q ss_pred HHHHHHHHh
Q 022131 205 REIWNDVKG 213 (302)
Q Consensus 205 ~~~~~~~~~ 213 (302)
...|+....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666665554
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.05 E-value=0.0069 Score=36.54 Aligned_cols=53 Identities=13% Similarity=0.094 Sum_probs=25.1
Q ss_pred HHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022131 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
|.+.+++++|.++++.+...+ +.+...+.....++...|++++|.+.++...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444444444544444444443 33444444444444445555555555544444
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.03 E-value=0.0028 Score=38.94 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhc----CC-CcC-HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 022131 80 TSFSIVLHVYSRAHQPQLSLDKLNFMKEK----GI-CPT-VATYSSVVKCLCSCGRIEDAEELLGEMVR 142 (302)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 142 (302)
.+++.+...|...|++++|+..|++..+. |. .|+ ..++..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666777777777777777777766533 11 111 44566677777777777777777776543
No 211
>PRK15331 chaperone protein SicA; Provisional
Probab=96.96 E-value=0.071 Score=37.56 Aligned_cols=91 Identities=12% Similarity=-0.031 Sum_probs=75.2
Q ss_pred HHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 022131 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235 (302)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 235 (302)
.--+...|++++|..+|+-+...+ +-+..-|..|..++-..+++++|...|......+. -|+..+-....++...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 334568999999999999999876 56677778888888899999999999998766542 455666778899999999
Q ss_pred HHHHHHHHHHHHHC
Q 022131 236 WKEACQYFVEMIEK 249 (302)
Q Consensus 236 ~~~a~~~~~~~~~~ 249 (302)
.+.|...|...+++
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998773
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.94 E-value=0.024 Score=46.67 Aligned_cols=66 Identities=11% Similarity=0.036 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 022131 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL----DSYTMLIHGLCEKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 249 (302)
+.+...++.+..+|...|++++|...|++..+. .|+. .+|..+..+|...|+.++|+..+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344556666666666666666666666666653 3442 23666666666666666666666666653
No 213
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.86 E-value=0.027 Score=43.08 Aligned_cols=106 Identities=13% Similarity=0.188 Sum_probs=77.3
Q ss_pred cccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----------------C
Q 022131 31 EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH----------------Q 94 (302)
Q Consensus 31 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------~ 94 (302)
+-|-.+|...+..+....--. .+.++-....++.|.+.|+..|..+|+.||..+-+.. +
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~-----R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~Q 138 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRG-----RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQ 138 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcc-----cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchh
Confidence 346667777776665521100 4567777788899999999999999999998765532 2
Q ss_pred chhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCH-HHHHHHHHHHH
Q 022131 95 PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI-EDAEELLGEMV 141 (302)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~ 141 (302)
-+-+++++++|..+|+.||..+-..+++++.+.+-. .+..++.-.|.
T Consensus 139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 245889999999999999999999999999987753 34444444443
No 214
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.82 E-value=0.26 Score=41.98 Aligned_cols=160 Identities=16% Similarity=0.152 Sum_probs=105.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCh------hhHHHHHHHHHc----cCCchHHHHHHHHHHhCCCCCCCHHHHH
Q 022131 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSA------ETYNCFFKEYRG----RKDANGAMKLYRQMKEDGLCVPNMHSYN 189 (302)
Q Consensus 120 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (302)
++....=.||-+.+++.+.+..+.+---.+ -.|..++..++. ..+.+.+.+++..+.+. .|+...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl 270 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFL 270 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHH
Confidence 344455678999999999887764221122 233334433333 45667899999999988 57766665
Q ss_pred HH-HHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHH
Q 022131 190 IL-IGMFMALNRMDMVREIWNDVKGSGL---GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265 (302)
Q Consensus 190 ~l-~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 265 (302)
.. .+.+...|++++|.+.|+....... +.....+--+..++.-.+++++|.+.|..+.+.. ..+..+|..+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 44 4566678999999999997664211 1123344456667888999999999999998753 33455555554443
Q ss_pred h-hcchH-------HHHHHHHHhccc
Q 022131 266 I-QSDML-------RTWRRLKKKLDE 283 (302)
Q Consensus 266 ~-~~g~~-------~~a~~~~~~~~~ 283 (302)
. ..|+. ++|.+++++...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3 56766 788888877554
No 215
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.77 E-value=0.19 Score=39.73 Aligned_cols=138 Identities=14% Similarity=0.178 Sum_probs=88.5
Q ss_pred cchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh
Q 022131 15 IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG---IEPDVTSFSIVLHVYSR 91 (302)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~ 91 (302)
+++...+++.|.+.|+.-+..+|-+........ ..........++..+|+.|++.- -.++...+..++.. .
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~----~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~ 151 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEE----EKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--T 151 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhc----ccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--c
Confidence 566788899999999988887766644333331 11111577889999999999863 12455566666544 3
Q ss_pred cCCc----hhHHHHHHHHHhcCCCcCHH--HHHHHHHHHhccCC--HHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 022131 92 AHQP----QLSLDKLNFMKEKGICPTVA--TYSSVVKCLCSCGR--IEDAEELLGEMVRNGVCPSAETYNCFFKE 158 (302)
Q Consensus 92 ~~~~----~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (302)
..++ +.+..+|+.+.+.|+..+.. ....++........ ...+.++++.+.+.|+++....|..+.-.
T Consensus 152 ~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 152 SEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 3333 55677788888877665433 33344433333222 34788889999999988887777655433
No 216
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.76 E-value=0.084 Score=35.54 Aligned_cols=65 Identities=14% Similarity=0.163 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 022131 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216 (302)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (302)
......+......|..+...+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344455556666666677777777666544 56666666677777777777777777776666654
No 217
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.75 E-value=0.34 Score=42.27 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-CCCCchhhHHHHHHHHh
Q 022131 225 MLIHGLCEKQKWKEACQYFVEMIEK-GLLPQKVTFETLYRGLI 266 (302)
Q Consensus 225 ~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 266 (302)
.|..--...|..+.|++.--.+.+. .+-|....|+.+.-+.+
T Consensus 1026 ilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaac 1068 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAAC 1068 (1189)
T ss_pred HHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHh
Confidence 3444455678888888876666543 46666777776654433
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.73 E-value=0.21 Score=43.09 Aligned_cols=219 Identities=13% Similarity=0.131 Sum_probs=121.4
Q ss_pred HHHHHHHHhcCCcc--hHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCC----
Q 022131 3 TSLIYGWCKINRID--MAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIE---- 76 (302)
Q Consensus 3 ~~li~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---- 76 (302)
+..=.+|.+..+.. +.+.-+++++++|-.|+.... ...++- .|.+.+|-++|.+--..+-.
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay----------~gKF~EAAklFk~~G~enRAlEmy 668 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAY----------QGKFHEAAKLFKRSGHENRALEMY 668 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHh----------hhhHHHHHHHHHHcCchhhHHHHH
Confidence 33445666655543 333345566777777776543 333444 77888888888764332100
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHH------HHHHCCCC---C
Q 022131 77 PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLG------EMVRNGVC---P 147 (302)
Q Consensus 77 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~------~~~~~~~~---~ 147 (302)
.|...|. ...-+...|..++-..+.++-.+ ...+..--.+....+...|+.++|..+.- -+.+.+.+ .
T Consensus 669 TDlRMFD-~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ 745 (1081)
T KOG1538|consen 669 TDLRMFD-YAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKA 745 (1081)
T ss_pred HHHHHHH-HHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchh
Confidence 0111111 23334445554444433332211 00111111233445556677777765432 12222222 2
Q ss_pred ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------
Q 022131 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD------ 221 (302)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------ 221 (302)
+..+...+...+.+...+..|.++|..|-.. ..+++.....++|++|..+-+...+. .||+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqw 813 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQW 813 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHH
Confidence 3344555555556677778888888877543 35778888999999999988877663 34432
Q ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 022131 222 -----SYTMLIHGLCEKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 222 -----~~~~li~~~~~~g~~~~a~~~~~~~~~~ 249 (302)
-|.-.-.+|.++|+-.+|.++++++-..
T Consensus 814 LAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2333446788889999999999887654
No 219
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.25 Score=40.17 Aligned_cols=83 Identities=7% Similarity=-0.079 Sum_probs=41.4
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHH---HHHHHhhcch
Q 022131 197 ALNRMDMVREIWNDVKGS---GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET---LYRGLIQSDM 270 (302)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~---l~~~~~~~g~ 270 (302)
+.|++..|.+.+.+.+.. +.+|+...|........+.|+.++|+.-..+..+ .|+.-... -.+++...++
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHH
Confidence 455666666666665542 2334455555555555566666666665555533 22221111 1233444555
Q ss_pred HHHHHHHHHhccc
Q 022131 271 LRTWRRLKKKLDE 283 (302)
Q Consensus 271 ~~~a~~~~~~~~~ 283 (302)
|++|.+-+++..+
T Consensus 337 ~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHh
Confidence 6665555555433
No 220
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.67 E-value=0.19 Score=38.22 Aligned_cols=82 Identities=7% Similarity=0.041 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcC--CCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG--ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (302)
-...|+.-+. -.+.|++++|.+.|+.+.... -+-...+.-.++.++.+.+++++|+...++....-.......|...
T Consensus 34 ~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 3444554444 447899999999999998663 2234556666777888999999999999998876443344456666
Q ss_pred HHHHH
Q 022131 156 FKEYR 160 (302)
Q Consensus 156 ~~~~~ 160 (302)
|.+++
T Consensus 113 lkgLs 117 (254)
T COG4105 113 LKGLS 117 (254)
T ss_pred HHHHH
Confidence 66655
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.60 E-value=0.13 Score=42.62 Aligned_cols=66 Identities=12% Similarity=0.014 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 022131 77 PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV---ATYSSVVKCLCSCGRIEDAEELLGEMVRN 143 (302)
Q Consensus 77 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 143 (302)
.+...++.+..+|.+.|++++|+..|++..+.... +. .+|..+..+|...|+.++|+..+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999887533 22 45899999999999999999999999885
No 222
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.55 E-value=0.072 Score=40.91 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHCCCCCchhhHHHHHHHHhhcc
Q 022131 238 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269 (302)
Q Consensus 238 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 269 (302)
=++.++++|...|+.||..+-..|++++.+.+
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 35666677776777777776666776666655
No 223
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.48 E-value=0.3 Score=38.44 Aligned_cols=130 Identities=16% Similarity=0.118 Sum_probs=67.1
Q ss_pred HhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHH-HHHHHHHHHHHHHhc--------CCCCCH-
Q 022131 10 CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK-TIRNAEKVFDEMRVR--------GIEPDV- 79 (302)
Q Consensus 10 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~- 79 (302)
.+.|+++.|..++.+....-...++.....+-..|...|.-.-. .+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~---~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~ 80 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS---KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS 80 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH---cCCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence 57899999999999987653123333333444333332211000 12 333333333332221 122222
Q ss_pred ----HHHHHHHHHHHhcCCch---hHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 022131 80 ----TSFSIVLHVYSRAHQPQ---LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143 (302)
Q Consensus 80 ----~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 143 (302)
.++..++.++...+..+ +|..+++.+...... .+.++..-+..+.+.++.+++.+++.+|...
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 35566666676666544 344455555443221 2444545566666677777777777777765
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.46 E-value=0.47 Score=40.44 Aligned_cols=161 Identities=19% Similarity=0.140 Sum_probs=107.5
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcC-CCcC-----HHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhhHH
Q 022131 84 IVLHVYSRAHQPQLSLDKLNFMKEKG-ICPT-----VATYSSVVKCLCS----CGRIEDAEELLGEMVRNGVCPSAETYN 153 (302)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (302)
.++....=.||-+..++.+.+..+.+ +... .-+|..++..++. ..+.+.|.++++.+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 34445555788888888888776543 2211 1234444444433 45778899999999986 46766665
Q ss_pred HH-HHHHHccCCchHHHHHHHHHHhCC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022131 154 CF-FKEYRGRKDANGAMKLYRQMKEDG--LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230 (302)
Q Consensus 154 ~l-~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 230 (302)
.. .+.+...|+.++|.+.|+...... ........+--+.-.+....+|++|.+.|..+.+.+ .-+...|.-+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 44 356778999999999999765421 112233445556677888999999999999999852 33555555554444
Q ss_pred -HHcCCH-------HHHHHHHHHHH
Q 022131 231 -CEKQKW-------KEACQYFVEMI 247 (302)
Q Consensus 231 -~~~g~~-------~~a~~~~~~~~ 247 (302)
...|+. ++|.++|.+..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 556777 88888888764
No 225
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.32 Score=37.81 Aligned_cols=143 Identities=13% Similarity=0.083 Sum_probs=80.6
Q ss_pred HHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchH
Q 022131 88 VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG 167 (302)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 167 (302)
.....|+...|...|......... +...-..+..+|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345566777777777766665322 3445556667777777777777777766543221122222233444555555555
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCC
Q 022131 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS--GLGPDLDSYTMLIHGLCEKQK 235 (302)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~ 235 (302)
..++-+++-.. +.|...-..+...+...|+.+.|.+.+-.+.++ |. -|...-..+++.+.--|.
T Consensus 222 ~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCC
Confidence 55555555544 446666666677777777777776665555443 22 244555566666655553
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.22 Score=40.30 Aligned_cols=124 Identities=14% Similarity=0.092 Sum_probs=70.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHC-----CCC---------CChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCH
Q 022131 120 VVKCLCSCGRIEDAEELLGEMVRN-----GVC---------PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185 (302)
Q Consensus 120 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 185 (302)
-.+.|.+.|++..|..-|++.... +.. .-..++..+..+|.+.+++..|+..-....+.+ ++|+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~ 291 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNV 291 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCch
Confidence 344567777777777777765432 110 112345555566666677777777666666665 5666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 022131 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD-SYTMLIHGLCEKQKW-KEACQYFVEMI 247 (302)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~-~~a~~~~~~~~ 247 (302)
...-.-..++...|+++.|+..|+++.+. .|+-. .-+.++.+-.+.... +...++|..|-
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666677777777777777776664 34333 333333333332222 23345555554
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.31 E-value=0.13 Score=39.29 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=51.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCC-CCCHHHHHHHH
Q 022131 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGV--CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC-VPNMHSYNILI 192 (302)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~ 192 (302)
.|+.-+..+ +.|++..|...|...++... ......+-.|..++...|++++|..+|..+.+.... +--+..+-.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355444433 34556666666666665421 122344455566666666666666666666554211 11124445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 022131 193 GMFMALNRMDMVREIWNDVKGS 214 (302)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~ 214 (302)
.+..+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5555666666666666665554
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.27 E-value=0.53 Score=38.94 Aligned_cols=147 Identities=16% Similarity=0.198 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcC
Q 022131 35 VTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG-IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPT 113 (302)
Q Consensus 35 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 113 (302)
.+|-..+....+ ...++.|..+|-+..+.+ ..+++..+++++..++ .|+...|.++|+--...- +-+
T Consensus 398 ~v~C~~~N~v~r----------~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~ 465 (660)
T COG5107 398 FVFCVHLNYVLR----------KRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDS 465 (660)
T ss_pred hHHHHHHHHHHH----------HhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCc
Confidence 345556665555 666788888898888887 5677888888888665 578888888888655542 223
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHH
Q 022131 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS--AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNIL 191 (302)
Q Consensus 114 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 191 (302)
..--...+..+.+.++-+.|..+|+...++ +..+ ...|..+|..-..-|+...+..+-+.+.+. .|...+....
T Consensus 466 ~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~---~pQen~~evF 541 (660)
T COG5107 466 TLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL---VPQENLIEVF 541 (660)
T ss_pred hHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH---cCcHhHHHHH
Confidence 333345666777888888888888865543 1122 567888888888888888888877777766 5666555555
Q ss_pred HHHHHh
Q 022131 192 IGMFMA 197 (302)
Q Consensus 192 ~~~~~~ 197 (302)
.+.|.-
T Consensus 542 ~Sry~i 547 (660)
T COG5107 542 TSRYAI 547 (660)
T ss_pred HHHHhh
Confidence 555543
No 229
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.26 E-value=0.21 Score=34.34 Aligned_cols=79 Identities=8% Similarity=0.026 Sum_probs=57.1
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcC--CCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 022131 86 LHVYSRAHQPQLSLDKLNFMKEKG--ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163 (302)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 163 (302)
.....+.|++++|.+.|+.+...- .+-...+-..++.+|.+.+++++|...+++.++..+......|...+.+++...
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 344557889999999999987762 122455667788899999999999999999988755444456666666665444
Q ss_pred C
Q 022131 164 D 164 (302)
Q Consensus 164 ~ 164 (302)
.
T Consensus 97 ~ 97 (142)
T PF13512_consen 97 Q 97 (142)
T ss_pred H
Confidence 3
No 230
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.23 E-value=0.39 Score=40.42 Aligned_cols=155 Identities=10% Similarity=0.055 Sum_probs=80.6
Q ss_pred HhcCCchhHHHHHHHHH-hcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHH
Q 022131 90 SRAHQPQLSLDKLNFMK-EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGA 168 (302)
Q Consensus 90 ~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 168 (302)
.-.++++.+.+..+.-. -..+ +..-.+.++..+.+.|..+.|+.+...-. .-.....+.|+.+.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHH
Confidence 34566666555554111 1111 23346667777777777777766643321 123334566666666
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 169 MKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
.++..+ .++...|..|.+...+.|+++-|++.+++..+ |..|+-.|...|+.+...++.+....
T Consensus 338 ~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 338 LEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 654432 24566777777777777777777777776542 34555566666776666666666555
Q ss_pred CCCCCchhhHHHHHHHHhhcchHHHHHHHHHh
Q 022131 249 KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK 280 (302)
Q Consensus 249 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (302)
.|- ++..+.++.-.|+.++..+++.+
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 432 34445555556666666665543
No 231
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.22 E-value=0.56 Score=38.79 Aligned_cols=126 Identities=13% Similarity=0.178 Sum_probs=81.9
Q ss_pred chHHHHHHHHHHhCCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHH--HH
Q 022131 165 ANGAMKLYRQMKEDGLCVPNMHSYNILI----GMFMA---LNRMDMVREIWNDVKGSGLGPD----LDSYTMLIHG--LC 231 (302)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~--~~ 231 (302)
-++++.+++.+.+-. +-|..+-|.+. .+|.. ...+..-..+-+-+.+.|++|- ...-|.|.++ +.
T Consensus 396 dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 396 DEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred cHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 566777777776653 34444333332 22222 2334444445555566677763 3455555544 46
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccCCCcccchhh
Q 022131 232 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 294 (302)
Q Consensus 232 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 294 (302)
..|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|..++..+....-..++.+..
T Consensus 474 sqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqK 534 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQK 534 (549)
T ss_pred hcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHH
Confidence 78999998877766655 78999999999989999999999999999987655444444443
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.21 E-value=0.37 Score=36.65 Aligned_cols=156 Identities=15% Similarity=0.110 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhc-------c
Q 022131 57 EKTIRNAEKVFDEMRVRGI--EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS-------C 127 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~ 127 (302)
.|++++|.+.|+.+..+-+ +-...+--.++.++.+.++++.|...+++..+.-..-....|...|.+.+. .
T Consensus 47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~ 126 (254)
T COG4105 47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVT 126 (254)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccc
Confidence 5788888888888886521 123455666777888889999988888888776433233344444444442 1
Q ss_pred CCHH---HHHHHHHHHHHC----CCCCChhh------------HHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCH---
Q 022131 128 GRIE---DAEELLGEMVRN----GVCPSAET------------YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM--- 185 (302)
Q Consensus 128 ~~~~---~a~~~~~~~~~~----~~~~~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 185 (302)
.|.. +|..-|+++++. .-.||... =..+.+.|.+.|.+..|..-++++.+.- +-+.
T Consensus 127 rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y--~~t~~~~ 204 (254)
T COG4105 127 RDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENY--PDTSAVR 204 (254)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcc--ccccchH
Confidence 2333 344444444443 11223221 1355678999999999999999998873 2332
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022131 186 HSYNILIGMFMALNRMDMVREIWNDVKGS 214 (302)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (302)
..+-.+..+|...|-.++|.+.-.-+...
T Consensus 205 eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 205 EALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 34556678888999999988877666553
No 233
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.18 E-value=0.53 Score=38.17 Aligned_cols=251 Identities=11% Similarity=0.054 Sum_probs=141.9
Q ss_pred cCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHH
Q 022131 12 INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT--SFSIVLHVY 89 (302)
Q Consensus 12 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~ 89 (302)
.|+-..|.++-.+..+. +..|......++.+-... +.|+++.|.+-|+.|... |... -...|.-.-
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal--------~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleA 164 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAAL--------LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEA 164 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHH--------hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHH
Confidence 35555565555444322 333555555555543331 167778888888887753 1211 112222223
Q ss_pred HhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-------------------------
Q 022131 90 SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG------------------------- 144 (302)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------------------- 144 (302)
.+.|+.+.|.++-+..-..-. --...+...+...+..|+++.|+++++.-....
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 356666777766666655432 234566777777777777777777776543321
Q ss_pred --------------CCCChh-hHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022131 145 --------------VCPSAE-TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWN 209 (302)
Q Consensus 145 --------------~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (302)
+.|+.. .-....+++.+.|+..++-.+++.+-+. .|.+..+.. ..+.+.|+. +..-++
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~l--Y~~ar~gdt--a~dRlk 316 (531)
T COG3898 244 DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALL--YVRARSGDT--ALDRLK 316 (531)
T ss_pred ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHH--HHHhcCCCc--HHHHHH
Confidence 122211 1123345667778888888888887776 344443322 223344442 333333
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHh-hcchHHHHHHHHHhcccc
Q 022131 210 DVKGS-GLGP-DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI-QSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 210 ~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~ 284 (302)
...+. .++| +..+--.+..+-...|++..|..--+...+ ..|....|..|.+.-. ..|+-.++.+++.+-.+.
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 22221 1233 455666677777888888888777666644 4677777877776544 458888888888776543
No 234
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.16 E-value=0.22 Score=33.61 Aligned_cols=65 Identities=17% Similarity=0.270 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 022131 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL 251 (302)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 251 (302)
......++.....|+-|.-.++...+.+. -.+++...-.+..+|.+.|+..++.+++.+..+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34455566666777777777777766542 356666666777777777777777777777777665
No 235
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.18 Score=40.75 Aligned_cols=126 Identities=8% Similarity=0.025 Sum_probs=92.1
Q ss_pred HHHHHhcCCchhHHHHHHHHHhc-----CC---------CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhh
Q 022131 86 LHVYSRAHQPQLSLDKLNFMKEK-----GI---------CPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAET 151 (302)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~-----~~---------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 151 (302)
.+.+.+.|++..|..-|++.... +. ..-..++..+.-++.+.+++..|+...++.+..+. +|.-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhH
Confidence 34577788888888887775432 11 11244677888899999999999999999998854 67888
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhC
Q 022131 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM-DMVREIWNDVKGS 214 (302)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 214 (302)
...-.+++...|+++.|...|+.+.+.. +.|...-+.++.+-.+.... +...++|..|...
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888899999999999999999999984 44544444555544444443 3447788887753
No 236
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.09 E-value=0.27 Score=34.03 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=17.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 022131 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161 (302)
Q Consensus 120 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (302)
++..+...+.......+++.+...+. .+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 33334444444444444444444432 344444444444443
No 237
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.06 E-value=0.28 Score=33.95 Aligned_cols=125 Identities=11% Similarity=0.068 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 022131 83 SIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR 162 (302)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (302)
..++..+.+.+.+.....+++.+...+. .+...++.++..|++.+ ..+....++. . .+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 4577777778889999999999988773 57778999999998764 3344444432 1 2344455677777777
Q ss_pred CCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 022131 163 KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL-NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231 (302)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 231 (302)
+-++++.-++.++... ...+..+... ++.+.|.+++.+. .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~~----------~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGNF----------KDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcCH----------HHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 7777777777665221 1223333333 6677777766642 25556666666554
No 238
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.03 E-value=0.66 Score=37.85 Aligned_cols=169 Identities=9% Similarity=-0.070 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh---cCCchhHHHHHHHHHh
Q 022131 34 VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG---IEPDVTSFSIVLHVYSR---AHQPQLSLDKLNFMKE 107 (302)
Q Consensus 34 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~ 107 (302)
..+...++-+|-. .++++...++.+.+.... +.-+...-....-++.+ .|+.++|++++..+..
T Consensus 141 ~div~~lllSyRd----------iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~ 210 (374)
T PF13281_consen 141 PDIVINLLLSYRD----------IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE 210 (374)
T ss_pred hhHHHHHHHHhhh----------hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh
Confidence 3344455556777 899999999999998752 11122223344455666 8999999999999766
Q ss_pred cCCCcCHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC-ch---HHHHHH--
Q 022131 108 KGICPTVATYSSVVKCLCS---------CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD-AN---GAMKLY-- 172 (302)
Q Consensus 108 ~~~~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~-- 172 (302)
....+++.++..+.+.|-. ....++|...|.+.-+.. |+..+=-.++..+...|+ .+ +..++-
T Consensus 211 ~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~ 288 (374)
T PF13281_consen 211 SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVK 288 (374)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 6667788899888887653 224677888887766542 333221112222222222 22 222222
Q ss_pred -H-HHHhCCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022131 173 -R-QMKEDGL--CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214 (302)
Q Consensus 173 -~-~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (302)
. .+.+.|. ...+-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus 289 l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 289 LSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1 1222332 1345566688899999999999999999999976
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.53 Score=36.63 Aligned_cols=146 Identities=11% Similarity=0.092 Sum_probs=104.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 022131 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199 (302)
Q Consensus 120 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (302)
-.......|+..+|..+|........ -+...-..+..+|...|+.+.+..++..+..... .........-+..+.+..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAA 217 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHh
Confidence 34456778999999999999988744 3466777889999999999999999999876532 222333334456666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCchhhHHHHHHHHhhcc
Q 022131 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL-LPQKVTFETLYRGLIQSD 269 (302)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g 269 (302)
...+...+-...-.. +-|...-..+...+...|+.+.|.+.+-.+.+++. .-|...-..++..+.-.|
T Consensus 218 ~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 218 ATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred cCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 666666666666553 33777778889999999999999998877765522 235556666777666666
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.91 E-value=0.21 Score=38.26 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCC--CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CC-ChhhHHHHH
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFMKEKGI--CPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV-CP-SAETYNCFF 156 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~ 156 (302)
.|+..+..+ +.|++..|...|....+... ......+--|..++...|++++|..+|..+.+.-. .| -+..+.-+.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 577777655 67889999999999988742 22344566689999999999999999999987622 12 246777788
Q ss_pred HHHHccCCchHHHHHHHHHHhCC
Q 022131 157 KEYRGRKDANGAMKLYRQMKEDG 179 (302)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~ 179 (302)
.+..+.|+.++|..+|+++.+.-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 88899999999999999999883
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.54 Score=37.31 Aligned_cols=153 Identities=6% Similarity=-0.065 Sum_probs=104.8
Q ss_pred HhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHH----HHHHHHHccCCc
Q 022131 90 SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN----CFFKEYRGRKDA 165 (302)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~ 165 (302)
...|+..+|-..++++++. .+.|...+...=.+|.-.|+.......++++... ..++...|. .+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467778888888888775 4557777888888888888888888888888754 223433332 223344577888
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 022131 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS---GLGPDLDSYTMLIHGLCEKQKWKEACQY 242 (302)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~ 242 (302)
++|.+.-++..+.+ +.|.-.-.++...+...|+..++.++..+-... +--.-...|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 88888888888776 567666677777777888888888877654432 1111123344455556677888889888
Q ss_pred HHHH
Q 022131 243 FVEM 246 (302)
Q Consensus 243 ~~~~ 246 (302)
|++=
T Consensus 270 yD~e 273 (491)
T KOG2610|consen 270 YDRE 273 (491)
T ss_pred HHHH
Confidence 8754
No 242
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=1.2 Score=39.26 Aligned_cols=116 Identities=9% Similarity=0.083 Sum_probs=87.7
Q ss_pred CCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 022131 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSY 223 (302)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 223 (302)
|.....-+.+--+.-+...|+..+|.++-.+.+ -||-..|-.-+.+++..++|++-+++-+..+ ++.-|
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy 747 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGY 747 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCc
Confidence 333444556666777788899999988877765 6888999999999999999988777665443 35677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHH
Q 022131 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279 (302)
Q Consensus 224 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 279 (302)
...+.+|.+.|+.++|.+++-+... .. -...+|.+.|++.+|.++.-
T Consensus 748 ~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 748 LPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 8899999999999999998876521 11 46677888888888777643
No 243
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.74 E-value=0.17 Score=42.51 Aligned_cols=159 Identities=11% Similarity=0.052 Sum_probs=100.4
Q ss_pred HHHHhcCCcchHHHHHHHHH-hCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 022131 7 YGWCKINRIDMAERFLGEMI-ERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85 (302)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (302)
+...-.|+++++.++...-. -..++ ....+.++..+-+ .|..+.|+++-.+ .. .-
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~----------~G~~e~AL~~~~D---------~~---~r 324 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEK----------KGYPELALQFVTD---------PD---HR 324 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHH----------TT-HHHHHHHSS----------HH---HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHH----------CCCHHHHHhhcCC---------hH---HH
Confidence 34456788888877775211 11122 4456777777777 7777777766433 22 23
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCc
Q 022131 86 LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165 (302)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 165 (302)
.....+.|+++.|.++.++. .+...|..|.....+.|+++-|+..|++..+ +..++-.|...|+.
T Consensus 325 FeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDR 389 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-H
T ss_pred hHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCH
Confidence 34456788888887655432 3677899999999999999999999887643 56677778889998
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022131 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211 (302)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (302)
+...++.......|. ++....++.-.|+.++..+++.+.
T Consensus 390 ~~L~kl~~~a~~~~~-------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 390 EKLSKLAKIAEERGD-------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccC-------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 888888888887763 345555666678888888777654
No 244
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.74 E-value=0.23 Score=38.58 Aligned_cols=77 Identities=16% Similarity=0.086 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCchhhHHHH
Q 022131 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE-----KGLLPQKVTFETL 261 (302)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~l 261 (302)
++..++..+...|+.+.+...++++... -+-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4555666666677777777777777665 344666777777777777777777777776654 3667766666555
Q ss_pred HHH
Q 022131 262 YRG 264 (302)
Q Consensus 262 ~~~ 264 (302)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 554
No 245
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.65 E-value=1.1 Score=37.30 Aligned_cols=147 Identities=14% Similarity=0.173 Sum_probs=112.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHH-HHH
Q 022131 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNG-VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS-YNI 190 (302)
Q Consensus 113 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~ 190 (302)
-..+|...++...+..-++.|..+|-++.+.+ ..++...+++++..++ .|++.-|..+|+--... -||... .+.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHH
Confidence 35578888998888889999999999999988 5678888899988665 56788899999876665 344444 456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHh
Q 022131 191 LIGMFMALNRMDMVREIWNDVKGSGLGPD--LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266 (302)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 266 (302)
.+..+.+.++-..|..+|+....+ +..+ ...|..+|+-=..-|+...+..+=++|.+ +.|-..+...+..-|.
T Consensus 472 yl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 677778899999999999965543 2223 56899999988899999999988888876 4566655555554444
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.64 E-value=0.3 Score=32.94 Aligned_cols=91 Identities=12% Similarity=-0.030 Sum_probs=46.6
Q ss_pred HHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcC
Q 022131 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS---YTMLIHGLCEKQ 234 (302)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g 234 (302)
+.+..|+.+.|++.|.+....- +.....||.-.+++.-.|+.++|.+-+++..+..-..+... |..=...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3455566666666666655543 44555666666666666666666666655555311112211 222222344455
Q ss_pred CHHHHHHHHHHHHHCC
Q 022131 235 KWKEACQYFVEMIEKG 250 (302)
Q Consensus 235 ~~~~a~~~~~~~~~~~ 250 (302)
+-+.|..=|...-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 5566655555554444
No 247
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.63 E-value=0.91 Score=36.46 Aligned_cols=87 Identities=15% Similarity=0.245 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHH
Q 022131 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 265 (302)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 265 (302)
.+.+..+.-+...|+...|.++-.+.. -|+...|..-+.+++..++|++..++... +-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 345666777788999999888877663 37999999999999999999988776542 22457899999999
Q ss_pred hhcchHHHHHHHHHhcc
Q 022131 266 IQSDMLRTWRRLKKKLD 282 (302)
Q Consensus 266 ~~~g~~~~a~~~~~~~~ 282 (302)
.+.|...+|..+..++.
T Consensus 248 ~~~~~~~eA~~yI~k~~ 264 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP 264 (319)
T ss_pred HHCCCHHHHHHHHHhCC
Confidence 99999999999988843
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.53 E-value=0.066 Score=28.49 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=9.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHH
Q 022131 120 VVKCLCSCGRIEDAEELLGEMVR 142 (302)
Q Consensus 120 ll~~~~~~~~~~~a~~~~~~~~~ 142 (302)
+...|.+.|++++|+++|++..+
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333444444444433333
No 249
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.52 E-value=1.1 Score=36.52 Aligned_cols=220 Identities=12% Similarity=0.086 Sum_probs=142.3
Q ss_pred HhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 022131 10 CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPD-VTSFSIVLHV 88 (302)
Q Consensus 10 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~ 88 (302)
.-.|+++.|.+-|+-|... +.+-..=++++.-... + .|..+.|.+.-++.... .|. .-.+...+..
T Consensus 131 l~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAq-----r-~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~ 197 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQ-----R-LGAREAARHYAERAAEK--APQLPWAARATLEA 197 (531)
T ss_pred HhcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHH-----h-cccHHHHHHHHHHHHhh--ccCCchHHHHHHHH
Confidence 4569999999999999863 3333333333221000 0 56667777777666654 233 4567778888
Q ss_pred HHhcCCchhHHHHHHHHHhcC---------------------------------------CCcCHHH-HHHHHHHHhccC
Q 022131 89 YSRAHQPQLSLDKLNFMKEKG---------------------------------------ICPTVAT-YSSVVKCLCSCG 128 (302)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~---------------------------------------~~~~~~~-~~~ll~~~~~~~ 128 (302)
.+..|+|+.|+++++.-+... +.||... -..-..++.+.|
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~ 277 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDG 277 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc
Confidence 888999999998887654321 1122111 122345677889
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 022131 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC-VPNMHSYNILIGMFMALNRMDMVREI 207 (302)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (302)
+..++-.+++.+-+....|+ .+... .+.+.|+ .+.+-+++....... +.+..+...+..+....|++..|..-
T Consensus 278 ~~rKg~~ilE~aWK~ePHP~--ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~ 351 (531)
T COG3898 278 NLRKGSKILETAWKAEPHPD--IALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAK 351 (531)
T ss_pred chhhhhhHHHHHHhcCCChH--HHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHH
Confidence 99999999999988754444 33322 2345554 344444443322111 44566777788888899999988887
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCC
Q 022131 208 WNDVKGSGLGPDLDSYTMLIHGLCE-KQKWKEACQYFVEMIEKG 250 (302)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~ 250 (302)
-+.... ..|....|..|.+.-.. .||-.++...+.+.++..
T Consensus 352 Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 352 AEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 777665 47888888888877644 499999999999887753
No 250
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=1.4 Score=39.39 Aligned_cols=142 Identities=14% Similarity=0.172 Sum_probs=97.2
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCc
Q 022131 86 LHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDA 165 (302)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 165 (302)
...+.+.|++++|...|-+-... +.| ..++.-|....+..+-..+++.+.+.|+ .+...-..|+.+|.+.++.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcch
Confidence 34455789999999887766543 233 2356666777788888889999999988 5777888899999999999
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 022131 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245 (302)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 245 (302)
++..++.+... .|...-| ....+..+.+.+-.++|..+-.+... +......++. ..+++++|++++..
T Consensus 448 ~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 448 EKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISS 515 (933)
T ss_pred HHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhc
Confidence 98888777665 3321223 34556666677777777776655443 3333343333 46778888888776
Q ss_pred H
Q 022131 246 M 246 (302)
Q Consensus 246 ~ 246 (302)
+
T Consensus 516 l 516 (933)
T KOG2114|consen 516 L 516 (933)
T ss_pred C
Confidence 5
No 251
>PRK11906 transcriptional regulator; Provisional
Probab=95.48 E-value=1.3 Score=37.08 Aligned_cols=156 Identities=14% Similarity=0.068 Sum_probs=99.0
Q ss_pred cchHHHHHHHHHhC-CCccc-HHHHHHHHHHHHhccc--CCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 022131 15 IDMAERFLGEMIER-GVEPN-VVTYNVLLNGVCRRAS--LHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90 (302)
Q Consensus 15 ~~~a~~~~~~~~~~-~~~~~-~~~~~~ll~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (302)
.+.|..+|.+.... ...|+ ...|..+-.++...-- +.+ ......+|.++-+...+.+ +.|......+..+..
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~---~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE---LELAAQKALELLDYVSDIT-TVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 46788889888832 23444 3344444443333100 111 1567788888888888876 447888888888888
Q ss_pred hcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHccCCchHHH
Q 022131 91 RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP-SAETYNCFFKEYRGRKDANGAM 169 (302)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 169 (302)
-.++.+.+..+|++....+.. ...+|........-+|+.++|.+.+++..+..+.. -.......+..|+.++ .+.+.
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 888899999999999887532 45566666666777899999999999977653211 1222233344555544 56666
Q ss_pred HHHHHHH
Q 022131 170 KLYRQMK 176 (302)
Q Consensus 170 ~~~~~~~ 176 (302)
+++-+-.
T Consensus 428 ~~~~~~~ 434 (458)
T PRK11906 428 KLYYKET 434 (458)
T ss_pred HHHhhcc
Confidence 6665433
No 252
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.43 E-value=0.1 Score=42.39 Aligned_cols=223 Identities=13% Similarity=0.040 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCchhHHHHHHHH--Hh--cCCC-cCHHHHHHHHHHHhcc
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDV----TSFSIVLHVYSRAHQPQLSLDKLNFM--KE--KGIC-PTVATYSSVVKCLCSC 127 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~--~~--~~~~-~~~~~~~~ll~~~~~~ 127 (302)
.|+......+|+...+.|.. |. ..|..|..+|.-.+++++|+++...= .. .|-+ -...+...|.+.+--.
T Consensus 30 ~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~ 108 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVK 108 (639)
T ss_pred ccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhh
Confidence 77788889999999988733 43 35667778888888999998864321 11 1100 0122233445555556
Q ss_pred CCHHHHHHHHHHH----HHCCC-CCChhhHHHHHHHHHccCCc--------------------hHHHHHHHHHHh----C
Q 022131 128 GRIEDAEELLGEM----VRNGV-CPSAETYNCFFKEYRGRKDA--------------------NGAMKLYRQMKE----D 178 (302)
Q Consensus 128 ~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~----~ 178 (302)
|.+++|.-...+- .+.|- ......+..+...|...|.- +.|.++|.+=.+ .
T Consensus 109 G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l 188 (639)
T KOG1130|consen 109 GAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL 188 (639)
T ss_pred cccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777765443321 22221 12334455566666544421 223333332211 1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----
Q 022131 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK----GSGLG-PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK---- 249 (302)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---- 249 (302)
|-.-.-...|..|...|.-.|+++.|+...+.-. +.|-+ .....+..+..++.-.|+++.|.+.|+.....
T Consensus 189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel 268 (639)
T KOG1130|consen 189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL 268 (639)
T ss_pred hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh
Confidence 1001122345556666666788999987765422 22322 23456778889999999999999999876432
Q ss_pred CC-CCchhhHHHHHHHHhhcchHHHHHHHHHh
Q 022131 250 GL-LPQKVTFETLYRGLIQSDMLRTWRRLKKK 280 (302)
Q Consensus 250 ~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (302)
|- .....+..+|.+.|.-..++++|+.++.+
T Consensus 269 g~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 269 GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 21 22344566788888888899999888765
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.36 E-value=0.061 Score=28.61 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHH
Q 022131 80 TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121 (302)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 121 (302)
.++..+...|.+.|++++|.++|+++.+... -|...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHhh
Confidence 4677889999999999999999999999853 3666665543
No 254
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.35 E-value=1.1 Score=35.59 Aligned_cols=151 Identities=18% Similarity=0.190 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHhcCCCcCHHHHHHHHHHHhc--cC----CHHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHccCCc-
Q 022131 96 QLSLDKLNFMKEKGICPTVATYSSVVKCLCS--CG----RIEDAEELLGEMVRNGV---CPSAETYNCFFKEYRGRKDA- 165 (302)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~- 165 (302)
++.+.+++.|.+.|+..+..+|-+....... .. ....|..+|+.|++..+ .++...+..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4567788899999998887776654433333 22 34578899999998742 2344455555443 33333
Q ss_pred ---hHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH---
Q 022131 166 ---NGAMKLYRQMKEDGLCVPNMH-SYNILIGMFMALNR--MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW--- 236 (302)
Q Consensus 166 ---~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--- 236 (302)
+.+..+|+.+.+.|..+.|.- ..+.++..+..... ...+.++++.+.+.|+++....|..+.-...-.+..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~ 236 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKI 236 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHH
Confidence 457788888888776444543 33333333332222 447888999999999998888877665444333333
Q ss_pred -HHHHHHHHHHHH
Q 022131 237 -KEACQYFVEMIE 248 (302)
Q Consensus 237 -~~a~~~~~~~~~ 248 (302)
+...++.+.+.+
T Consensus 237 ~~~i~ev~~~L~~ 249 (297)
T PF13170_consen 237 VEEIKEVIDELKE 249 (297)
T ss_pred HHHHHHHHHHHhh
Confidence 344444444443
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.29 E-value=0.55 Score=31.75 Aligned_cols=90 Identities=19% Similarity=0.162 Sum_probs=49.4
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHH---HHHHHHHHHhcCC
Q 022131 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS---YNILIGMFMALNR 200 (302)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~ 200 (302)
.+..|+++.|++.|.+.+..- +-....||.-.+++.-.|+.++|++=+.+..+... ..+... |..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag-~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAG-DQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHhCc
Confidence 445566666666666665542 23555666666666666666666666666555432 122111 2222234455666
Q ss_pred HHHHHHHHHHHHhCC
Q 022131 201 MDMVREIWNDVKGSG 215 (302)
Q Consensus 201 ~~~a~~~~~~~~~~~ 215 (302)
-+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666665554
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=0.93 Score=34.35 Aligned_cols=117 Identities=9% Similarity=0.082 Sum_probs=66.0
Q ss_pred ccCCchHHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHH
Q 022131 161 GRKDANGAMKLYRQMKED----GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS----GLGPD-LDSYTMLIHGLC 231 (302)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~ 231 (302)
..-++++|+++|.+.... +....-...+..+...+.+...+++|-..+.+-... .--++ -..|-..|-.+.
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 445666677776665322 110111233445556666777777776665543221 01122 234555566667
Q ss_pred HcCCHHHHHHHHHHHHHCC---CCCchhhHHHHHHHHhhcchHHHHHHHH
Q 022131 232 EKQKWKEACQYFVEMIEKG---LLPQKVTFETLYRGLIQSDMLRTWRRLK 278 (302)
Q Consensus 232 ~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 278 (302)
...++..|...++.-.+.+ -.-+..+...|+.+| ..|+.+++..++
T Consensus 202 ~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred hHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 7778889998888754432 122456777777775 457777777764
No 257
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.28 E-value=0.39 Score=37.38 Aligned_cols=79 Identities=10% Similarity=0.126 Sum_probs=66.1
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 022131 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG-----SGLGPDLDSY 223 (302)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 223 (302)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 4466778888888899999999999998887 77888999999999999999999999888765 5888888877
Q ss_pred HHHHHH
Q 022131 224 TMLIHG 229 (302)
Q Consensus 224 ~~li~~ 229 (302)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 766665
No 258
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.23 E-value=0.73 Score=32.89 Aligned_cols=139 Identities=13% Similarity=0.167 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHH-HHHH
Q 022131 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE-TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH-SYNI 190 (302)
Q Consensus 113 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ 190 (302)
+...|..-++. ++.+..++|+.-|..+.+.|...-+. .-..+.......|+...|...|+++-.... .|-.. -...
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHH
Confidence 45566666654 55677888888888888876532221 222333455778888888888888877753 33322 1111
Q ss_pred H--HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 022131 191 L--IGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253 (302)
Q Consensus 191 l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 253 (302)
| .-.+...|.++.+..-.+-+...+-+.....-..|--+-.+.|++.+|.+.|..+.+....|
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 1 12344567788777777766655444444445566666678888888888888876643333
No 259
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.97 E-value=0.89 Score=32.46 Aligned_cols=16 Identities=31% Similarity=0.216 Sum_probs=6.3
Q ss_pred HHHHHcCCHHHHHHHH
Q 022131 228 HGLCEKQKWKEACQYF 243 (302)
Q Consensus 228 ~~~~~~g~~~~a~~~~ 243 (302)
+.+...|++-+|+++.
T Consensus 97 evLL~~g~vl~ALr~a 112 (167)
T PF07035_consen 97 EVLLSKGQVLEALRYA 112 (167)
T ss_pred HHHHhCCCHHHHHHHH
Confidence 3333344444444333
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.95 E-value=2 Score=36.29 Aligned_cols=76 Identities=9% Similarity=0.142 Sum_probs=49.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 022131 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192 (302)
Q Consensus 117 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 192 (302)
-..+..++-+.|+.++|++.+++|.+.... ........|+.++...+.+.++..++.+-.+....+.-..+|+..+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 345566666778888888888888754221 2344667788888888888888888888755443122234455544
No 261
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.94 E-value=1.1 Score=33.43 Aligned_cols=199 Identities=16% Similarity=0.069 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhc-CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 022131 79 VTSFSIVLHVYSRAHQPQLSLDKLNFMKEK-GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157 (302)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 157 (302)
..........+...++...+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344445555555555555555555554431 122234444445555555555555555555555432221 111222222
Q ss_pred -HHHccCCchHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC
Q 022131 158 -EYRGRKDANGAMKLYRQMKEDGLC-VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP-DLDSYTMLIHGLCEKQ 234 (302)
Q Consensus 158 -~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 234 (302)
.+...|+++.+...+.+....... ......+......+...++.+.+...+....... .. ....+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcc
Confidence 455555555555555555432100 0122223333333445555556665555555531 12 2444555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCc-hhhHHHHHHHHhhcchHHHHHHHHHhc
Q 022131 235 KWKEACQYFVEMIEKGLLPQ-KVTFETLYRGLIQSDMLRTWRRLKKKL 281 (302)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 281 (302)
+++.+...+...... .|+ ...+..+...+...+..+++...+.+.
T Consensus 217 ~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 217 KYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred cHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 556666655555442 222 222333333333444455555544443
No 262
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.93 E-value=3.3 Score=38.81 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=47.1
Q ss_pred HHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHc
Q 022131 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL--DSYTMLIHGLCEK 233 (302)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~ 233 (302)
...+.....+++|.-+|+..-+. ...+.+|..+|+|.+|..+..++... -+. .+-..|+.-+...
T Consensus 946 a~hL~~~~~~~~Aal~Ye~~Gkl----------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 946 ADHLREELMSDEAALMYERCGKL----------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHhccccHHHHHHHHhccH----------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHc
Confidence 33344556666666665544322 23466777777777777777666432 121 2225566777777
Q ss_pred CCHHHHHHHHHHHHH
Q 022131 234 QKWKEACQYFVEMIE 248 (302)
Q Consensus 234 g~~~~a~~~~~~~~~ 248 (302)
+++-+|-++..+...
T Consensus 1013 ~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLS 1027 (1265)
T ss_pred ccchhHHHHHHHHhc
Confidence 777777777766543
No 263
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.81 E-value=0.91 Score=32.97 Aligned_cols=61 Identities=10% Similarity=0.179 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022131 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPD--LDSYTMLIHGLCEKQKWKEACQYFVEMI 247 (302)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 247 (302)
.+..+...|.+.|+.+.|.+.+.++.+....+. ...+-.+|+.....+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344555666666666666666666555432222 2334455555566666666666655554
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.79 E-value=3.2 Score=38.86 Aligned_cols=118 Identities=15% Similarity=0.140 Sum_probs=71.7
Q ss_pred CcCHHHHHHHH----HHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHH
Q 022131 111 CPTVATYSSVV----KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH 186 (302)
Q Consensus 111 ~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 186 (302)
.|+...+.... ..+.....+++|--.|+..-+. ...+.+|...|+|.+++.+..++.... .--..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~--de~~~ 1000 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGK--DELVI 1000 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCH--HHHHH
Confidence 34555444444 4444566777777766655331 245677888889999888888775432 01111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022131 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247 (302)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 247 (302)
+-..|+.-+...++.-+|-++..+..+. | ...+..+++...+++|+++.....
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 2256777777888888888887776653 2 223445566666777777665443
No 265
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.69 E-value=1.1 Score=32.09 Aligned_cols=123 Identities=11% Similarity=0.131 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHH-HHHHH--HHHHhccCCHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPD-VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA-TYSSV--VKCLCSCGRIED 132 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--l~~~~~~~~~~~ 132 (302)
.+..++|+..|.++.+.|...- .-..-.+.....+.|+...|...|.++-.....|-.. -...| .-.+...|.+++
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence 3444566666666666554311 1122233444555666666666666665443223222 11111 122345566666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCC
Q 022131 133 AEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179 (302)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (302)
...-.+.+...+-+.....-..|.-+-.+.|++.+|...|..+-...
T Consensus 151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 66666655544433334444455555556666666666666666554
No 266
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.69 E-value=1.8 Score=34.58 Aligned_cols=153 Identities=5% Similarity=-0.027 Sum_probs=93.1
Q ss_pred hcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc---CCCCCHHHHHHHHH
Q 022131 11 KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR---GIEPDVTSFSIVLH 87 (302)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~ 87 (302)
..|++-+|-..++++++. .|.|...++..=.++.. .|........++++... +++-.......+.-
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy----------~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFY----------NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHh----------ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 456777777777777765 45566677777777777 44444555555555432 12222233344445
Q ss_pred HHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHccCC
Q 022131 88 VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN---GVCPSAETYNCFFKEYRGRKD 164 (302)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 164 (302)
++...|-+++|++.-++..+.+ +.|.....++...+-..|++.++.+...+-... +.-.-..-|=...-.+...+.
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ae 262 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAE 262 (491)
T ss_pred hHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccc
Confidence 5667888888888888887775 346777777777777888888888776654332 000001111122223456688
Q ss_pred chHHHHHHHHH
Q 022131 165 ANGAMKLYRQM 175 (302)
Q Consensus 165 ~~~a~~~~~~~ 175 (302)
++.|+.+|+.-
T Consensus 263 ye~aleIyD~e 273 (491)
T KOG2610|consen 263 YEKALEIYDRE 273 (491)
T ss_pred hhHHHHHHHHH
Confidence 88888888754
No 267
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.65 E-value=2.8 Score=36.75 Aligned_cols=183 Identities=15% Similarity=0.121 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHH--HHH-HHhcCCchhHHHHHHHHHh-------cCCCcCHHHHHHHHHHHhccC
Q 022131 59 TIRNAEKVFDEMRVRGIEPDVTSFSIV--LHV-YSRAHQPQLSLDKLNFMKE-------KGICPTVATYSSVVKCLCSCG 128 (302)
Q Consensus 59 ~~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~ 128 (302)
+...+.+.++.....|.. .....-.. ..+ +....|.+.|+.+++.+.+ .| .......+..+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 357788899988887622 22222222 222 4466788999999998877 45 2334556677776643
Q ss_pred -----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-cCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--hcCC
Q 022131 129 -----RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG-RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM--ALNR 200 (302)
Q Consensus 129 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~ 200 (302)
+.+.|..++.+.-+.|. |+.......+..... ..+...|.++|...-+.|. +...-+..++.... ...+
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--ILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCcCCC
Confidence 67789999999988876 555544333332222 2456789999999998873 33333333222222 3356
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 022131 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250 (302)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 250 (302)
...|..++.+..+.| .|....-...+..+.. +.++.+.-.+..+.+.|
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 888999999988887 3332222223333333 66666666666555544
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.60 E-value=0.12 Score=26.00 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022131 222 SYTMLIHGLCEKQKWKEACQYFVEMI 247 (302)
Q Consensus 222 ~~~~li~~~~~~g~~~~a~~~~~~~~ 247 (302)
+|+.|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666777777777777777777643
No 269
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.58 E-value=1.2 Score=32.28 Aligned_cols=63 Identities=10% Similarity=0.148 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcC--HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 022131 80 TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPT--VATYSSVVKCLCSCGRIEDAEELLGEMVR 142 (302)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 142 (302)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+..+|+...-.+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566777778888888888888888777644333 23456667777777777777777766554
No 270
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.48 E-value=0.49 Score=37.14 Aligned_cols=105 Identities=12% Similarity=0.121 Sum_probs=73.9
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcC---CCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh
Q 022131 73 RGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG---ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149 (302)
Q Consensus 73 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 149 (302)
.|.+....+...++..-....+++.++..+-++...- ..|+. +-.+.++.+.+ -+.++++.++..=++.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 3444455566666666666778888888877775431 11111 22233444433 3667888888888888999999
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHhCC
Q 022131 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179 (302)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (302)
.+++.+|+.+.+.+++.+|.++...|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999998888877664
No 271
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.36 E-value=0.48 Score=30.00 Aligned_cols=60 Identities=13% Similarity=0.208 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHH
Q 022131 61 RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121 (302)
Q Consensus 61 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 121 (302)
-++.+-++.+...+..|++....+.+++|.+.+|+..|.++|+-.+... ..+...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 3455666777777777788888888888888888888888887776432 11334555554
No 272
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.35 E-value=1.2 Score=31.36 Aligned_cols=119 Identities=13% Similarity=0.070 Sum_probs=69.1
Q ss_pred hhHHHHHHH---HHccCCchHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 022131 150 ETYNCFFKE---YRGRKDANGAMKLYRQMKEDGLCVPNMHS-YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225 (302)
Q Consensus 150 ~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (302)
.+.+.|+.. -...++.+.+..++..+.-.. |.... -..-...+...|+|.+|.++|+.+... .|....-..
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR---P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kA 82 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLR---PEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKA 82 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHH
Confidence 344444443 357788899999999888773 43332 233344567889999999999998765 344444555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHH
Q 022131 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276 (302)
Q Consensus 226 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 276 (302)
|+..|.....-..=...-+++.+.+- |..+ ..+++.+....+...|..
T Consensus 83 LlA~CL~~~~D~~Wr~~A~evle~~~--d~~a-~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 83 LLALCLYALGDPSWRRYADEVLESGA--DPDA-RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhcCC--ChHH-HHHHHHHHHhccccchhh
Confidence 55555443332222333444555443 3333 335566665555555544
No 273
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.32 E-value=3.4 Score=36.27 Aligned_cols=183 Identities=15% Similarity=0.037 Sum_probs=113.5
Q ss_pred chhHHHHHHHHHhcCCCcCHHHHHHH--HHH-HhccCCHHHHHHHHHHHHH-------CCCCCChhhHHHHHHHHHccC-
Q 022131 95 PQLSLDKLNFMKEKGICPTVATYSSV--VKC-LCSCGRIEDAEELLGEMVR-------NGVCPSAETYNCFFKEYRGRK- 163 (302)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~- 163 (302)
...+.++++...+.|.. ........ ..+ +....+.+.|+.+|+...+ .| .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 45788888888887632 12222222 222 4466799999999999877 44 3445667777777643
Q ss_pred ----CchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HcC
Q 022131 164 ----DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA-LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC----EKQ 234 (302)
Q Consensus 164 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g 234 (302)
+.+.|..++...-+.| .|+.......+..... ..+...|.+.|....+.|.. ..+-.+..+|. ...
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVER 378 (552)
T ss_pred CccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCC
Confidence 5677999999999988 5776554444433333 34678999999999988643 22222333322 335
Q ss_pred CHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccCCCc
Q 022131 235 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288 (302)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 288 (302)
+...|..++.+.-+.| .|...--...+..+.. ++.+.+.-.+..+.+.|...
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV 430 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH
Confidence 7889999999998887 3332222223333344 66666666555555555443
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.29 E-value=0.13 Score=25.95 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=14.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHH
Q 022131 117 YSSVVKCLCSCGRIEDAEELLGEM 140 (302)
Q Consensus 117 ~~~ll~~~~~~~~~~~a~~~~~~~ 140 (302)
|..|...|.+.|++++|+.++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566666666666666666653
No 275
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.27 E-value=1.4 Score=31.53 Aligned_cols=136 Identities=10% Similarity=0.156 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC--CchHHHHHHHHH
Q 022131 98 SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK--DANGAMKLYRQM 175 (302)
Q Consensus 98 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~ 175 (302)
..++++.+.+.+++|+...+..+++.+.+.|++... .++.+.++-+|.......+-.+.... -..-+.+++.++
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 356777778889999999999999999999986654 55556666677666655554333321 123345555544
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 022131 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250 (302)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 250 (302)
.. .+..+++.+...|++-+|.++.+..... +......++++..+.+|...-..+++-..+.+
T Consensus 89 ~~---------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 89 GT---------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hh---------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 32 2356777888999999999998876432 22233557777777888777777776665543
No 276
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.13 E-value=0.041 Score=38.31 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=46.0
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (302)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++. .+..-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4555666667777777777777655455666777777777777666666666551 111222344444455555
Q ss_pred chHHHHHHHH
Q 022131 165 ANGAMKLYRQ 174 (302)
Q Consensus 165 ~~~a~~~~~~ 174 (302)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 277
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=2.7 Score=37.80 Aligned_cols=180 Identities=11% Similarity=0.129 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPT--VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (302)
....-+....+...++.|+.+-+. .+..++ ........+.+.+.|++++|...|-+-+.. +.| ..++.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 344566667777777777766544 332222 122334445556889999999888776643 222 245666
Q ss_pred HHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 022131 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238 (302)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 238 (302)
|...........+++.+.+.|. .+...-+.|+.+|.+.++.+.-.++.+... .|.- ..-....+..+.+.+-.++
T Consensus 407 fLdaq~IknLt~YLe~L~~~gl--a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGL--ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHccc--ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 7777778888889999999995 566667889999999999999888877665 2221 1123456666777777777
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhcc
Q 022131 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282 (302)
Q Consensus 239 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (302)
|..+..+... +...... .+-..+++++|.++++.+.
T Consensus 482 a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 7776665432 2222222 2445667777777776653
No 278
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.87 E-value=0.26 Score=24.23 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 222 SYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 222 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555666666666666666666554
No 279
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.87 E-value=2 Score=31.99 Aligned_cols=201 Identities=13% Similarity=0.052 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCc
Q 022131 34 VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR-GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP 112 (302)
Q Consensus 34 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (302)
...+......+.. .+.+..+...+...... ........+......+...++...+...+.........+
T Consensus 59 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (291)
T COG0457 59 AGLLLLLALALLK----------LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP 128 (291)
T ss_pred hHHHHHHHHHHHH----------cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc
Confidence 3444555555555 56667777777776642 234456677777888888888999999999988765443
Q ss_pred CHHHHHHHHH-HHhccCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCC-CHHHH
Q 022131 113 TVATYSSVVK-CLCSCGRIEDAEELLGEMVRNGV--CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP-NMHSY 188 (302)
Q Consensus 113 ~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 188 (302)
......... .+...|+++.|...+++...... ......+......+...++.+.+...+....... +. ....+
T Consensus 129 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~ 205 (291)
T COG0457 129 -DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN--PDDDAEAL 205 (291)
T ss_pred -chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--cccchHHH
Confidence 222333333 78899999999999999866321 1234444455555678889999999999999885 34 47788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 022131 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPD-LDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 249 (302)
..+...+...++.+.+...+...... .|+ ...+..+...+...+..+.+...+.+....
T Consensus 206 ~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 206 LNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888999999999999999998875 333 445555555555777899999999888764
No 280
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.79 E-value=1.9 Score=34.05 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022131 201 MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247 (302)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 247 (302)
+++++.++..=++.|+-||..+++.+|+.+.+.+++.+|.++.-.|.
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34444444444444455555555555555555555555444444443
No 281
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=3.3 Score=34.07 Aligned_cols=153 Identities=8% Similarity=-0.044 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHH-------------HHHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT-------------YSSVVKC 123 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~ll~~ 123 (302)
.++.++|.+.--...+.+ ..+....-.-..++.-.++.+.+...|++.+..+ |+... +..-.+-
T Consensus 182 ~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~ 258 (486)
T KOG0550|consen 182 LGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGND 258 (486)
T ss_pred cccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhh
Confidence 566666666655555543 1123222222233445677888888888887764 33222 1222333
Q ss_pred HhccCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 022131 124 LCSCGRIEDAEELLGEMVRN---GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR 200 (302)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (302)
..+.|++..|.+.|.+.+.. ...|+...|.....+..+.|+..+|+.--.+..... +.-...+..-..++.-.++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEK 336 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHH
Confidence 56789999999999998865 334556667667777788999999988877777553 1222333444456667788
Q ss_pred HHHHHHHHHHHHhC
Q 022131 201 MDMVREIWNDVKGS 214 (302)
Q Consensus 201 ~~~a~~~~~~~~~~ 214 (302)
|++|.+-++...+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999988887765
No 282
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.71 E-value=1.6 Score=30.22 Aligned_cols=54 Identities=6% Similarity=-0.063 Sum_probs=24.2
Q ss_pred HccCCchHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022131 160 RGRKDANGAMKLYRQMKEDGLC-VPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
.+.|++++|.+.|+.+...--. +-....-..++.+|.+.+++++|...+++.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3445555555555555443200 11223334444455555555555555555444
No 283
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.64 E-value=4 Score=34.69 Aligned_cols=96 Identities=13% Similarity=0.162 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 157 (302)
|....-+++..+.+...+.-+..+-.+|...| .+...+..++.+|..+ ..++-..+|+++.+..+ .|...-..+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 33444445555555555555555555555443 2344455555555554 33445555555554433 12222222222
Q ss_pred HHHccCCchHHHHHHHHHHhC
Q 022131 158 EYRGRKDANGAMKLYRQMKED 178 (302)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~ 178 (302)
.| ..++.+.+..+|..+...
T Consensus 141 ~y-Ekik~sk~a~~f~Ka~yr 160 (711)
T COG1747 141 KY-EKIKKSKAAEFFGKALYR 160 (711)
T ss_pred HH-HHhchhhHHHHHHHHHHH
Confidence 22 224445555555544443
No 284
>PRK11906 transcriptional regulator; Provisional
Probab=93.62 E-value=3.8 Score=34.39 Aligned_cols=137 Identities=12% Similarity=0.084 Sum_probs=74.3
Q ss_pred HHH--HHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHh---------cCCchhHHHH
Q 022131 35 VTY--NVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR-GIEPD-VTSFSIVLHVYSR---------AHQPQLSLDK 101 (302)
Q Consensus 35 ~~~--~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~~~~ll~~~~~---------~~~~~~a~~~ 101 (302)
..| ...+.+.....+.. ....+.|+.+|.+.... ...|+ ...|..+..++.. ..+..+|.++
T Consensus 252 ~a~~~d~ylrg~~~~~~~t-----~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~ 326 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFT-----PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALEL 326 (458)
T ss_pred cchhhHHHHHHHHHhhccC-----HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 455 55555555422222 45667788888888722 12333 3344444333322 1123345555
Q ss_pred HHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhC
Q 022131 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178 (302)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (302)
-+...+.+ +.|......+..+..-.++++.|..+|++....++ -...+|......+.-.|+.++|.+.+++..+.
T Consensus 327 A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 327 LDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 55555555 23666666666666666667777777777666532 23444444445555666777777777665554
No 285
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.57 E-value=1.1 Score=33.03 Aligned_cols=79 Identities=15% Similarity=0.059 Sum_probs=62.0
Q ss_pred HHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHccCCc
Q 022131 89 YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN---GVCPSAETYNCFFKEYRGRKDA 165 (302)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 165 (302)
..+.|+ +.|.+.|-.+...+.--++.....+...|. ..+.+++..++.+..+. +-.+|+..+..|+..+.+.+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 445555 788888888888776556666666666666 57899999999888764 3367899999999999999999
Q ss_pred hHHH
Q 022131 166 NGAM 169 (302)
Q Consensus 166 ~~a~ 169 (302)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 286
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.18 E-value=2.3 Score=30.64 Aligned_cols=120 Identities=13% Similarity=0.148 Sum_probs=69.1
Q ss_pred cchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcC
Q 022131 15 IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPD-VTSFSIVLHVYSRAH 93 (302)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~ 93 (302)
|+.|.+.++.-...+ +.|...++.--.++.....+.....-...+++|+.-|++.... .|+ ..++..+..++...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 455666666543332 5566666666666655444433322246678888888888876 444 356666666665533
Q ss_pred ----C-------chhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 022131 94 ----Q-------PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145 (302)
Q Consensus 94 ----~-------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 145 (302)
+ +++|...|++..+. .|+...|+.-+.... +|-++..++.+++.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 2 34455555555554 688888888887753 46667777766643
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.08 E-value=0.16 Score=25.23 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHH
Q 022131 183 PNMHSYNILIGMFMALNRMDMV 204 (302)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a 204 (302)
-+...|+.+...+...|++++|
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhh
Confidence 3444444444444444444444
No 288
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.01 E-value=0.42 Score=23.30 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 222 SYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 222 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
.+..+..++...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555566666666666666666554
No 289
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.99 E-value=1.6 Score=28.11 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHH
Q 022131 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262 (302)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 262 (302)
+..+-++.+......|++....+.+.+|.+.+++..|+++++-.+.+ ..+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence 44445555555556666666666666666666666666666665543 222222455444
No 290
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.85 E-value=3.9 Score=32.28 Aligned_cols=220 Identities=8% Similarity=0.049 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHhcC--CCCCH------HHHHHHHHHHHhcCCchhHHHHHHHHHhc--------CCCcC-----HH
Q 022131 57 EKTIRNAEKVFDEMRVRG--IEPDV------TSFSIVLHVYSRAHQPQLSLDKLNFMKEK--------GICPT-----VA 115 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~--~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~-----~~ 115 (302)
.|+++.|..++.+..... ..|+. ..|+.-...+.+..+++.|...+++..+. ...|+ ..
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 678888888888887643 22332 13343333343333888888777766443 12223 34
Q ss_pred HHHHHHHHHhccCCHH---HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 022131 116 TYSSVVKCLCSCGRIE---DAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192 (302)
Q Consensus 116 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 192 (302)
++..++.+|...+..+ +|..+++.+..... -.+..+..-++.+.+.++.+.+.+++.+|...- .-....+..++
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~--~~~e~~~~~~l 162 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV--DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc--ccccchHHHHH
Confidence 5677888888877654 56666666654422 235566666777778899999999999999874 21334455555
Q ss_pred HHH---HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHH-HHHHH---HHcCC------HHHHHHHHHHHHHC-CCCCchhh
Q 022131 193 GMF---MALNRMDMVREIWNDVKGSGLGPDLD-SYTM-LIHGL---CEKQK------WKEACQYFVEMIEK-GLLPQKVT 257 (302)
Q Consensus 193 ~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~-li~~~---~~~g~------~~~a~~~~~~~~~~-~~~p~~~~ 257 (302)
..+ .... ...+...+..+....+.|... .... ++... .+.++ .+...+++....+. +.+.+..+
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 444 3333 345666666555444555553 1111 11111 11111 44444555543322 23334333
Q ss_pred HH---HHH----HHHhhcchHHHHHHHHHh
Q 022131 258 FE---TLY----RGLIQSDMLRTWRRLKKK 280 (302)
Q Consensus 258 ~~---~l~----~~~~~~g~~~~a~~~~~~ 280 (302)
-. +++ ..+.+.++++.|.++++-
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 22 222 445678899999999874
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.82 E-value=2.5 Score=29.92 Aligned_cols=114 Identities=22% Similarity=0.212 Sum_probs=64.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 022131 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY-NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL 198 (302)
Q Consensus 120 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (302)
++..-.+.++.+++..+++.+.-. .|..... ..-...+...|++.+|.++|+++.+.. |.......|+..|...
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~---~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA---PGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC---CCChHHHHHHHHHHHH
Confidence 334445778999999999998875 3443322 222345688999999999999988774 4444444555544443
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 022131 199 NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241 (302)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 241 (302)
..-..=...-+++.+.+..|+. ..++..+....+...|..
T Consensus 91 ~~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 91 LGDPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred cCChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 3222222333445554333332 234444444444444433
No 292
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.56 E-value=3.7 Score=31.32 Aligned_cols=57 Identities=12% Similarity=0.125 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 022131 187 SYNILIGMFMALNRMDMVREIWNDVKGS---GLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244 (302)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 244 (302)
.+...|-.+.-..++..|...++.-.+. .-+-+..+...|+.+| ..|+.+++..++.
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 3455555666777888898888874442 2233567788888876 4577777766553
No 293
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.29 E-value=0.53 Score=24.24 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 221 DSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 221 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777777777777777777777653
No 294
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.20 E-value=5.4 Score=32.38 Aligned_cols=227 Identities=10% Similarity=0.026 Sum_probs=128.1
Q ss_pred hcCCcchHHHHHHHHHhC--CCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHH----HHHHHhcC-CCCCHHHHH
Q 022131 11 KINRIDMAERFLGEMIER--GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKV----FDEMRVRG-IEPDVTSFS 83 (302)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~----~~~~~~~~-~~~~~~~~~ 83 (302)
...+.++|+..|..-+.+ +..-.-.++..+..+.++ .+.+++++.. .+-..+.. -..-...|-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~----------~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSE----------MGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777766543 111122344455555555 4554444322 22221110 001123455
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhc-CCCc---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-----CCCChhhHHH
Q 022131 84 IVLHVYSRAHQPQLSLDKLNFMKEK-GICP---TVATYSSVVKCLCSCGRIEDAEELLGEMVRNG-----VCPSAETYNC 154 (302)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ 154 (302)
.+.+++-+..++.+++.+-..-... |..| ......++..++...+.++++++.|+...+.. .......+..
T Consensus 88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~ 167 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS 167 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence 5666666666667776665554433 2111 12344557777888888999999998876531 1123457788
Q ss_pred HHHHHHccCCchHHHHHHHHHHhCCC--CCCCH-HHH-----HHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHH
Q 022131 155 FFKEYRGRKDANGAMKLYRQMKEDGL--CVPNM-HSY-----NILIGMFMALNRMDMVREIWNDVKG----SGLGP-DLD 221 (302)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~-~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~ 221 (302)
+-..|.+..+++++.-+.....+.-. .-.|. .-| ..+.-++-..|....|.+..++..+ .|-.+ ...
T Consensus 168 Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ar 247 (518)
T KOG1941|consen 168 LGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQAR 247 (518)
T ss_pred HHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHH
Confidence 88888888999988777665543210 01121 112 2233455567777777777766543 33222 233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022131 222 SYTMLIHGLCEKQKWKEACQYFVEMI 247 (302)
Q Consensus 222 ~~~~li~~~~~~g~~~~a~~~~~~~~ 247 (302)
....+.+.|...|+.+.|+.-|+...
T Consensus 248 c~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 248 CLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 44566778888999998888777653
No 295
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.99 E-value=4 Score=34.43 Aligned_cols=124 Identities=12% Similarity=0.107 Sum_probs=77.9
Q ss_pred HccCCchHHHH-HHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 022131 160 RGRKDANGAMK-LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238 (302)
Q Consensus 160 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 238 (302)
...|+.-.|-+ ++..+..... .|+..... ...+...|+++.+.+.+....+. +.....+..++++.....|+++.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~-~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQ-DPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCC-CchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 34555555544 4444444332 44444333 33456778888888888766553 34456677888888888889999
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccCCCc
Q 022131 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF 288 (302)
Q Consensus 239 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 288 (302)
|..+...|....+. ++.......-.....|-++++...++++...+.+-
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 99988888766543 33333333344456677888888888876544443
No 296
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.96 E-value=0.25 Score=24.54 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhccCCHHHH
Q 022131 114 VATYSSVVKCLCSCGRIEDA 133 (302)
Q Consensus 114 ~~~~~~ll~~~~~~~~~~~a 133 (302)
...|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444433
No 297
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.84 E-value=2.3 Score=27.36 Aligned_cols=59 Identities=14% Similarity=0.181 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHH
Q 022131 62 NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVV 121 (302)
Q Consensus 62 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 121 (302)
+..+-++.+...+..|++.+....+++|.+.+++..|+++|+-++..-- .....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHH
Confidence 4556666666677777777777777888778888888887777765421 1222555554
No 298
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.41 E-value=0.63 Score=23.94 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 022131 115 ATYSSVVKCLCSCGRIEDAEELLGEMVR 142 (302)
Q Consensus 115 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 142 (302)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666666543
No 299
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.18 E-value=11 Score=33.76 Aligned_cols=195 Identities=13% Similarity=0.111 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHH-hcCCCcC--HHHHHHHHHHHh-ccCCHHHHHHHHHHHHHCCCCCChh---
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMK-EKGICPT--VATYSSVVKCLC-SCGRIEDAEELLGEMVRNGVCPSAE--- 150 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~--- 150 (302)
+...|..||.. |++.++.+. +..++|. ..++-.+...+. ...+++.|+..+++.....-.++..
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 45566666543 344555555 3233332 233444555554 5667888888888765432222211
Q ss_pred --hHHHHHHHHHccCCchHHHHHHHHHHhCCCC---CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHH
Q 022131 151 --TYNCFFKEYRGRKDANGAMKLYRQMKEDGLC---VPNMHSYNIL-IGMFMALNRMDMVREIWNDVKGSG---LGPDLD 221 (302)
Q Consensus 151 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 221 (302)
.-..+++.+.+.+... |...+++..+.-.. .+-...|..+ +..+...++...|.+.++.+.... ..|...
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2234455666665555 77777776554320 1222222333 223333478888888887766532 234445
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHHCC--C-------CCchhhHHHHHHHHh--hcchHHHHHHHHHhcc
Q 022131 222 SYTMLIHGLC--EKQKWKEACQYFVEMIEKG--L-------LPQKVTFETLYRGLI--QSDMLRTWRRLKKKLD 282 (302)
Q Consensus 222 ~~~~li~~~~--~~g~~~~a~~~~~~~~~~~--~-------~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 282 (302)
++-.++.+.. +.+..+++.+.++++.... + .|-..+|..+++.+. ..|+.+.+.+.++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555553 3455677777777764321 1 234456666666444 5677666666655443
No 300
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.09 E-value=6 Score=30.71 Aligned_cols=153 Identities=10% Similarity=0.136 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCchhHHHHHHHHHhc---C--CCcCHHHHHHHHHHHhccCCH
Q 022131 59 TIRNAEKVFDEMRVRGIEPDV---TSFSIVLHVYSRAHQPQLSLDKLNFMKEK---G--ICPTVATYSSVVKCLCSCGRI 130 (302)
Q Consensus 59 ~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~ll~~~~~~~~~ 130 (302)
.+++|+.-|++..+....... .....++....+.+++++.+..+.++... . -..+....++++...+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 455666666665553211111 23344555666666666666665555321 0 112334455555555544444
Q ss_pred HHHHHHHHHHHHC-CCCCChh----hHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCC-----------HHHHHHHHHH
Q 022131 131 EDAEELLGEMVRN-GVCPSAE----TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN-----------MHSYNILIGM 194 (302)
Q Consensus 131 ~~a~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~l~~~ 194 (302)
+-....++.-.+. .-..+.. |-..+...|...+++.+...++.++..+.. ..+ ...|..=|+.
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq-~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQ-TEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhc-cccCchhhhccchhhhhHhhHhhh
Confidence 4444444332211 0001222 224455555555555555556555554432 111 1234444555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 022131 195 FMALNRMDMVREIWNDVK 212 (302)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~ 212 (302)
|....+-.....++++..
T Consensus 201 YT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhcccHHHHHHHHHHH
Confidence 555555555555555433
No 301
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.08 E-value=8.4 Score=32.36 Aligned_cols=259 Identities=12% Similarity=0.140 Sum_probs=139.7
Q ss_pred HHhcCCcchHHHHHHHHHhCCCcccH------HHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 022131 9 WCKINRIDMAERFLGEMIERGVEPNV------VTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSF 82 (302)
Q Consensus 9 ~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (302)
+.+.+++.+|.++|.+.-+.. ..++ ..-+.++++|.. .+.+.....+....+.. | ...|
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-----------~nld~Me~~l~~l~~~~--~-~s~~ 80 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-----------NNLDLMEKQLMELRQQF--G-KSAY 80 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-----------hhHHHHHHHHHHHHHhc--C-CchH
Confidence 457889999999999987652 2222 223456666653 45555555555555542 2 2222
Q ss_pred HHHHH--HHHhcCCchhHHHHHHHHHhc--CCCc------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-
Q 022131 83 SIVLH--VYSRAHQPQLSLDKLNFMKEK--GICP------------TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV- 145 (302)
Q Consensus 83 ~~ll~--~~~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~- 145 (302)
-.+.. .+.+.+++.+|.+.+....+. +..| |-..=+..+.++...|++.++..+++++...=+
T Consensus 81 l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llk 160 (549)
T PF07079_consen 81 LPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLK 160 (549)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh
Confidence 22222 244678899999988877655 2221 112224556677889999999999998876533
Q ss_pred ---CCChhhHHHHHHHHHccC--------Cc-------hHHHHHHHHHHhCCC-----CCCCHHHHHHHHHHHHhc--CC
Q 022131 146 ---CPSAETYNCFFKEYRGRK--------DA-------NGAMKLYRQMKEDGL-----CVPNMHSYNILIGMFMAL--NR 200 (302)
Q Consensus 146 ---~~~~~~~~~l~~~~~~~~--------~~-------~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~--~~ 200 (302)
.-+..+|+.++-.+.+.- .. +.+.-...++..... ..|....+..++....-. .+
T Consensus 161 rE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~ 240 (549)
T PF07079_consen 161 RECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKER 240 (549)
T ss_pred hhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhh
Confidence 367888888665554321 11 112222222221110 123333333333332221 11
Q ss_pred HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----chhhHHHHHHHHhhcchHHHHH
Q 022131 201 MDMVREIWNDVKGSGLGPDLD-SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP----QKVTFETLYRGLIQSDMLRTWR 275 (302)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~ 275 (302)
..--.++++.-...-+.|+-. ....++..+.. +.+++..+.+.+....+.+ =..+|..++....+.++..+|.
T Consensus 241 l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~ 318 (549)
T PF07079_consen 241 LPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAK 318 (549)
T ss_pred ccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 112222222223333445432 22333333333 5666666666554432221 2357888888899999999999
Q ss_pred HHHHhcccc
Q 022131 276 RLKKKLDEE 284 (302)
Q Consensus 276 ~~~~~~~~~ 284 (302)
+.+..+.--
T Consensus 319 q~l~lL~~l 327 (549)
T PF07079_consen 319 QYLALLKIL 327 (549)
T ss_pred HHHHHHHhc
Confidence 988776543
No 302
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.07 E-value=0.082 Score=36.83 Aligned_cols=121 Identities=10% Similarity=0.134 Sum_probs=72.8
Q ss_pred HHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 022131 154 CFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233 (302)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 233 (302)
.++..+.+.+.+.....+++.+...+. ..+....+.++..|++.+..+...++++.. +..-...++..|.+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENK-ENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTST-C-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhccc-ccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhc
Confidence 456667777888888888888886654 456777788888888887777777776611 112234567777778
Q ss_pred CCHHHHHHHHHHHHHCC--CC--CchhhHHHHHHHHhhcchHHHHHHHHHhcc
Q 022131 234 QKWKEACQYFVEMIEKG--LL--PQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282 (302)
Q Consensus 234 g~~~~a~~~~~~~~~~~--~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (302)
|.++++.-++.++.... +. -....+...+..+.+.++.+-+..+.+...
T Consensus 84 ~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l 136 (143)
T PF00637_consen 84 GLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCL 136 (143)
T ss_dssp TSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHC
T ss_pred chHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 88888888777653321 11 122333444455555555544444444443
No 303
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.98 E-value=2.8 Score=26.70 Aligned_cols=32 Identities=13% Similarity=0.274 Sum_probs=12.6
Q ss_pred CCCCChhhHHHHHHHHHccCCchHHHHHHHHH
Q 022131 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175 (302)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (302)
.+.|++....+.+++|.+.+++..|.++++.+
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333333333444444444444444433333
No 304
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.96 E-value=4 Score=28.46 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=32.6
Q ss_pred HccCCchHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022131 160 RGRKDANGAMKLYRQMKEDGLCVPNMH-SYNILIGMFMALNRMDMVREIWNDVKGS 214 (302)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (302)
...++++++..++..+.-.. |+.. .-..-...+...|+|++|.++|+.+.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLr---P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLR---PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhC---CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 35677777777777776653 3322 2222233456778888888888877765
No 305
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.87 E-value=9.5 Score=32.62 Aligned_cols=181 Identities=9% Similarity=-0.000 Sum_probs=124.2
Q ss_pred cccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCC
Q 022131 31 EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGI 110 (302)
Q Consensus 31 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 110 (302)
+.|.....+++..+.. ...++-.+.+..+|...| -+...+-.++.+|... ..+.-..+|+++.+..+
T Consensus 63 ~l~d~~l~~~~~~f~~----------n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df 129 (711)
T COG1747 63 LLDDSCLVTLLTIFGD----------NHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF 129 (711)
T ss_pred cccchHHHHHHHHhcc----------chHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc
Confidence 3455555666666666 667777888888888874 3678889999999988 66888999999998876
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-----CChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCH
Q 022131 111 CPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC-----PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNM 185 (302)
Q Consensus 111 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 185 (302)
. |...-..|...|-+ ++.+.+...|.++..+=++ .-...|..+... -..+.+..+.+...+........-.
T Consensus 130 n-Dvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~ 205 (711)
T COG1747 130 N-DVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGS 205 (711)
T ss_pred h-hHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHH
Confidence 5 55555666666666 8888888888888765331 112345555432 2456677778877777665434445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022131 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229 (302)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 229 (302)
..+.-+-.-|....++++|.+++..+.+.. ..|...-..++.-
T Consensus 206 Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 206 VLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 556666677888899999999999877763 2344444444443
No 306
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.84 E-value=10 Score=32.92 Aligned_cols=185 Identities=14% Similarity=0.022 Sum_probs=114.7
Q ss_pred cHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCc
Q 022131 33 NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP 112 (302)
Q Consensus 33 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (302)
+..+|+.-+..-.. .|+++.+.-+|++..-.- ..=...|-..++.....|+.+.|..++....+--.+-
T Consensus 296 ql~nw~~yLdf~i~----------~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~ 364 (577)
T KOG1258|consen 296 QLKNWRYYLDFEIT----------LGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKK 364 (577)
T ss_pred HHHHHHHHhhhhhh----------cccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC
Confidence 45667777776666 777788888887776321 1123455555566666688888888888776665444
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHccCCchHHH---HHHHHHHhCCCCCCCHHHH
Q 022131 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA-ETYNCFFKEYRGRKDANGAM---KLYRQMKEDGLCVPNMHSY 188 (302)
Q Consensus 113 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~ 188 (302)
.+.+.-.-....-..|++..|..+++.+.+.- |+. ..-..-+....+.|..+.+. .++...... .-+....
T Consensus 365 ~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~---~~~~~i~ 439 (577)
T KOG1258|consen 365 TPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG---KENNGIL 439 (577)
T ss_pred CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc---ccCcchh
Confidence 44443333334455689999999999988763 332 22233344456777777766 333333322 2233333
Q ss_pred HHHHHH-----HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 022131 189 NILIGM-----FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234 (302)
Q Consensus 189 ~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 234 (302)
..+.-- +.-.++.+.|..++.++.+. .+++...|..++......+
T Consensus 440 ~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 440 EKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 333222 22357888999999998886 6777788888887766554
No 307
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.50 E-value=0.91 Score=22.16 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=12.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 022131 116 TYSSVVKCLCSCGRIEDAEELLGEMVR 142 (302)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 142 (302)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444455555555555555554444
No 308
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.63 E-value=8.6 Score=30.22 Aligned_cols=136 Identities=11% Similarity=0.119 Sum_probs=80.1
Q ss_pred chhHHHHHHHHHh-cCCCcCHHHHHHHHHHHhc-cC-CHHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHccCCchHHHH
Q 022131 95 PQLSLDKLNFMKE-KGICPTVATYSSVVKCLCS-CG-RIEDAEELLGEMVR-NGVCPSAETYNCFFKEYRGRKDANGAMK 170 (302)
Q Consensus 95 ~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (302)
+.+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+-+.. .+..++..+...++..++..+++.+..+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555552211 1233456666666665554 22 22222233333332 2345677777777888888888888888
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhCCCCCCHHHHHHHHHHH
Q 022131 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND-----VKGSGLGPDLDSYTMLIHGL 230 (302)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~~~ 230 (302)
++...........|...|..+|......|+..-...+.++ +++.++..+...-..+-+.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 8777766633356777788888888888887777777665 34456666665555554444
No 309
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.62 E-value=10 Score=30.95 Aligned_cols=66 Identities=6% Similarity=-0.062 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---chhhHHHHHHHHhhcchHHHHHHHHHhccc
Q 022131 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP---QKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 218 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
....+|..++..+.+.|+++.|...+.++...+..+ ++.....-.+.+...|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455678888888889999999999888887643211 334444456677788888888888877666
No 310
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.48 E-value=7.4 Score=29.23 Aligned_cols=180 Identities=13% Similarity=0.097 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPD-VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 135 (302)
.|-+.-|.--|.+.... .|+ +.+||.|.-.+...|+++.|.+.|+...+.+..-+-...|.-|. +.-.|++.-|.+
T Consensus 78 lGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHH
Confidence 34444455555555543 444 67899999889999999999999999988865434334444343 334588888887
Q ss_pred HHHHHHHCCC-CCChhhHHHHHHHHHccCCchHHHHH-HHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022131 136 LLGEMVRNGV-CPSAETYNCFFKEYRGRKDANGAMKL-YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 136 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
=+.+.-+.+. .|-...|.-+. -..-++.+|..- .++..+ .|..-|...|-.+.- |+. ....+++.+..
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~-----~d~e~WG~~iV~~yL-gki-S~e~l~~~~~a 224 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK-----SDKEQWGWNIVEFYL-GKI-SEETLMERLKA 224 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh-----ccHhhhhHHHHHHHH-hhc-cHHHHHHHHHh
Confidence 7766665532 12223333222 233345555433 333332 233334333322221 111 11223333332
Q ss_pred CCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 022131 214 SGLGPD-------LDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250 (302)
Q Consensus 214 ~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 250 (302)
. -.-+ ..||--+...+...|+.++|..+|+-.+..+
T Consensus 225 ~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 225 D-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred h-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2 1111 3577778888889999999999999887653
No 311
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.22 E-value=13 Score=31.62 Aligned_cols=87 Identities=7% Similarity=-0.031 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 136 (302)
.|+++.+.+.+...... +.....+...+++...+.|+++.|..+-+.|....++ ++..........-..|-++++.-.
T Consensus 336 lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~ 413 (831)
T PRK15180 336 LGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHY 413 (831)
T ss_pred hhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHH
Confidence 67777777776665443 3345667777888888888888888888888776655 555544444444556677788888
Q ss_pred HHHHHHCCC
Q 022131 137 LGEMVRNGV 145 (302)
Q Consensus 137 ~~~~~~~~~ 145 (302)
|+++...+.
T Consensus 414 wk~~~~~~~ 422 (831)
T PRK15180 414 WKRVLLLNP 422 (831)
T ss_pred HHHHhccCC
Confidence 877766543
No 312
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.19 E-value=1 Score=21.66 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=11.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 022131 226 LIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 226 li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
+..++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444455555555555555544
No 313
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.11 E-value=5.2 Score=29.99 Aligned_cols=77 Identities=13% Similarity=0.042 Sum_probs=59.8
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 022131 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS--GLGPDLDSYTMLIH 228 (302)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~ 228 (302)
|.+..++.+.+.+...+++...++-.+.. +.|..+-..+++.++-.|+|++|..-++-.-.. ...+-..+|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 44556677888899999999998888885 567777788999999999999999888776653 23345677777776
Q ss_pred H
Q 022131 229 G 229 (302)
Q Consensus 229 ~ 229 (302)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 5
No 314
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.78 E-value=1.7 Score=21.06 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 222 SYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 222 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666777777777777777777655
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.77 E-value=1.6 Score=21.12 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=15.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 022131 116 TYSSVVKCLCSCGRIEDAEELLGEMVR 142 (302)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 142 (302)
.+..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555556666666666666665554
No 316
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.73 E-value=4.9 Score=30.13 Aligned_cols=78 Identities=17% Similarity=0.078 Sum_probs=56.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCC-CCCCHHHHHHHHHH
Q 022131 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL-CVPNMHSYNILIGM 194 (302)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~ 194 (302)
|.+..++.+.+.+.+.+++...++-.+... -+...-..+++.++-.|++++|..-++-.-+..- ..+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 445567778888999999999888777643 4677788899999999999999877766554420 13345566666654
No 317
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.65 E-value=12 Score=30.55 Aligned_cols=119 Identities=20% Similarity=0.226 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhc----CCCcCHH-HHH-----HHH
Q 022131 57 EKTIRNAEKVFDEMRVRG-----IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK----GICPTVA-TYS-----SVV 121 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~-~~~-----~ll 121 (302)
.+.++++++.|+.....- .-....++..|...|.+..|+++|.-+..+..+. ++. |.. -|. .+.
T Consensus 135 ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhma 213 (518)
T KOG1941|consen 135 LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMA 213 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHH
Confidence 677888888888776521 1123457888999999999999988776655332 322 222 122 233
Q ss_pred HHHhccCCHHHHHHHHHHHHH----CCCCC-ChhhHHHHHHHHHccCCchHHHHHHHHHH
Q 022131 122 KCLCSCGRIEDAEELLGEMVR----NGVCP-SAETYNCFFKEYRGRKDANGAMKLYRQMK 176 (302)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (302)
-++...|++.+|.+.-++..+ .|-.+ .......+.+.|...|+.+.++.-|++..
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 456677888888777776544 33322 23445567778889999999888777654
No 318
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=88.55 E-value=10 Score=29.65 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhc-----cCCHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS-----CGRIE 131 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~ 131 (302)
.++|.+++...-+..+.--+-.......-|-.|.+.+++..+.++-....+..-.-+...|.+++..|.. .|.++
T Consensus 96 mnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~ 175 (309)
T PF07163_consen 96 MNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFS 175 (309)
T ss_pred HhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHH
Confidence 5555655555444443221122333344444566666666666666655544222233335555555443 46666
Q ss_pred HHHHHH
Q 022131 132 DAEELL 137 (302)
Q Consensus 132 ~a~~~~ 137 (302)
+|+++.
T Consensus 176 eAeelv 181 (309)
T PF07163_consen 176 EAEELV 181 (309)
T ss_pred HHHHHH
Confidence 666655
No 319
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.32 E-value=6.8 Score=27.36 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=39.3
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHccCCchHHHHHHHHHHhCC
Q 022131 124 LCSCGRIEDAEELLGEMVRNGVCPS---AETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179 (302)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (302)
-...++.+++..+++.|.-. .|+ ..++.. ..+...|++.+|.++|+++.+.+
T Consensus 20 aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVL--RPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence 34578999999999998864 343 334433 44678999999999999998875
No 320
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.22 E-value=1.5 Score=23.35 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCC
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIERGV 30 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~ 30 (302)
-|..+|...|+.+.|.+++++....|-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 367899999999999999999997643
No 321
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.14 E-value=8.1 Score=28.01 Aligned_cols=98 Identities=14% Similarity=0.210 Sum_probs=58.8
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhC-----CCcccH-HHHHHHHHHHHhcccCCcch-hhHHHHHHHHHHHHHHHhcCCCC
Q 022131 5 LIYGWCKINRIDMAERFLGEMIER-----GVEPNV-VTYNVLLNGVCRRASLHPSE-RFEKTIRNAEKVFDEMRVRGIEP 77 (302)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~-~~~~~ll~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~ 77 (302)
.+.-+++..+..++.+++++.... .+.|+- .++..+-.++...+.+.+-. .....+++|...|+...+. .|
T Consensus 34 ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P 111 (186)
T PF06552_consen 34 ALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DP 111 (186)
T ss_dssp HHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---T
T ss_pred HHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CC
Confidence 344455555544555555544332 245554 57777777777766543322 3345678888888888876 78
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCC
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGI 110 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 110 (302)
+...|+.-+... .+|-++..++.+.+.
T Consensus 112 ~ne~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 112 NNELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp T-HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred CcHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 999999998887 456777777777653
No 322
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.81 E-value=12 Score=29.50 Aligned_cols=63 Identities=8% Similarity=0.094 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 022131 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGS-GLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244 (302)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 244 (302)
.++..+...++..++..+++..-.++|...... +..-|...|..+|......|+..-...+..
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 455555566666666666666666666655443 344455666666666666666554444443
No 323
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=87.81 E-value=11 Score=29.38 Aligned_cols=90 Identities=8% Similarity=0.112 Sum_probs=64.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 022131 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197 (302)
Q Consensus 118 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (302)
..=|.+++..+++.++..+.-+.-+.--+..+......|-.|.+.+++..+.++-........ .-+...|..++..|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHH
Confidence 445788889999999888766655432223345556666778999999999998888877643 3344457777766664
Q ss_pred -----cCCHHHHHHHH
Q 022131 198 -----LNRMDMVREIW 208 (302)
Q Consensus 198 -----~~~~~~a~~~~ 208 (302)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 58999999887
No 324
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.45 E-value=2.1 Score=20.75 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=15.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 022131 116 TYSSVVKCLCSCGRIEDAEELLGEMVR 142 (302)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 142 (302)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555556666666666666665544
No 325
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.41 E-value=11 Score=32.89 Aligned_cols=152 Identities=11% Similarity=0.096 Sum_probs=98.0
Q ss_pred HhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 022131 10 CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89 (302)
Q Consensus 10 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 89 (302)
.-.|+++.|..++....+ ..-+.+...+.+ .+..++|+++ .+|...- ....
T Consensus 597 vmrrd~~~a~~vLp~I~k-------~~rt~va~Fle~----------~g~~e~AL~~---------s~D~d~r---Fela 647 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK-------EIRTKVAHFLES----------QGMKEQALEL---------STDPDQR---FELA 647 (794)
T ss_pred hhhccccccccccccCch-------hhhhhHHhHhhh----------ccchHhhhhc---------CCChhhh---hhhh
Confidence 445777777765544431 233444444445 4444444432 3333322 2234
Q ss_pred HhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHH
Q 022131 90 SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAM 169 (302)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 169 (302)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|.+..+ |..|+-.+...|+.+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 46788888887766542 566799999999999999999988877654 456777788888887777
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022131 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212 (302)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (302)
.+-....+.| +.|. ..-+|...|+++++.+++..-.
T Consensus 713 ~la~~~~~~g--~~N~-----AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 713 VLASLAKKQG--KNNL-----AFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHHhhc--ccch-----HHHHHHHcCCHHHHHHHHHhcC
Confidence 7777777777 4443 3445567889999888877654
No 326
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.18 E-value=2.3 Score=22.64 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=9.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 022131 227 IHGLCEKQKWKEACQYFVEMI 247 (302)
Q Consensus 227 i~~~~~~g~~~~a~~~~~~~~ 247 (302)
..+|...|+.+.|.+++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 344444444444444444444
No 327
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=86.85 E-value=6.5 Score=26.53 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHh
Q 022131 65 KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE 107 (302)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 107 (302)
+-++.+...++.|++......++++.+.+|+..|.++|+-++.
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555555555543
No 328
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=86.78 E-value=7.8 Score=34.24 Aligned_cols=81 Identities=15% Similarity=0.261 Sum_probs=61.2
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhC--CCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIER--GVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
+|..+|...|++.++.++++.+... |-+.=...+|..++...+.|.++- ....+.+.+.+++..- .-|..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l----~~~~~~~~~~lq~a~l---n~d~~t 105 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFEL----TDVLSNAKELLQQARL---NGDSLT 105 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHhhc---CCcchH
Confidence 6889999999999999999998765 455556788999999999886643 4455667777776653 347778
Q ss_pred HHHHHHHHHh
Q 022131 82 FSIVLHVYSR 91 (302)
Q Consensus 82 ~~~ll~~~~~ 91 (302)
|..|+.+...
T Consensus 106 ~all~~~sln 115 (1117)
T COG5108 106 YALLCQASLN 115 (1117)
T ss_pred HHHHHHhhcC
Confidence 8877766544
No 329
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.32 E-value=4.4 Score=24.70 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=22.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCc--hhhHHHHHHHHhhcchHHHHHHH
Q 022131 232 EKQKWKEACQYFVEMIEKGLLPQ--KVTFETLYRGLIQSDMLRTWRRL 277 (302)
Q Consensus 232 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 277 (302)
..++.++|+..|....+.-..|. ..++..++.++...|+++++.++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554322211 13445555566666655555544
No 330
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.23 E-value=1.4 Score=20.11 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=8.5
Q ss_pred HHHHHhhcchHHHHHHHH
Q 022131 261 LYRGLIQSDMLRTWRRLK 278 (302)
Q Consensus 261 l~~~~~~~g~~~~a~~~~ 278 (302)
+..++...|+.++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344444445555544443
No 331
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.32 E-value=27 Score=31.29 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhc
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRR 47 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 47 (302)
++|-.|.++|++++|.++..+.... .......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4678899999999999999655443 455667788888888774
No 332
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.26 E-value=25 Score=30.72 Aligned_cols=86 Identities=13% Similarity=0.097 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCchhHHHHHHHHHhc-CCC-cCHHHHHHHHHHHhccCCHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS-RAHQPQLSLDKLNFMKEK-GIC-PTVATYSSVVKCLCSCGRIEDA 133 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~~~~~~a 133 (302)
.|..+.+.++|++-.+. ++.+...|...+.-+. ..|+.+...+.|+..... |.. .+...|...|..-...+++...
T Consensus 92 lg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v 170 (577)
T KOG1258|consen 92 LGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRV 170 (577)
T ss_pred hhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHH
Confidence 56666677777776653 4455555555544333 345555566666665543 211 1344566666666666667777
Q ss_pred HHHHHHHHHC
Q 022131 134 EELLGEMVRN 143 (302)
Q Consensus 134 ~~~~~~~~~~ 143 (302)
..+++++++.
T Consensus 171 ~~iyeRilei 180 (577)
T KOG1258|consen 171 ANIYERILEI 180 (577)
T ss_pred HHHHHHHHhh
Confidence 7776666653
No 333
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=84.92 E-value=4.5 Score=21.94 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=17.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCchhhHHHHH
Q 022131 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262 (302)
Q Consensus 231 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 262 (302)
.+.|-.+++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555555555555444
No 334
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.87 E-value=19 Score=32.32 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=16.3
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHH
Q 022131 7 YGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLN 42 (302)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 42 (302)
..+.-.|+|+.|++.+-. ..+...+...+...+.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~ 299 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALA 299 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHH
Confidence 445556777777766655 2223444444444444
No 335
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.56 E-value=10 Score=25.66 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
..+.++.+....+.|++.....-+++|.+-+|+..|.++|+-++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444555555566666666666666666666666666665544
No 336
>PRK09687 putative lyase; Provisional
Probab=84.30 E-value=19 Score=28.54 Aligned_cols=218 Identities=12% Similarity=0.027 Sum_probs=107.4
Q ss_pred ccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCc----hhHHHHHHHHHh
Q 022131 32 PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP----QLSLDKLNFMKE 107 (302)
Q Consensus 32 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~ 107 (302)
+|.......+.++...|. +++...+..+... +|...-...+.++.+.|+. +++...+..+..
T Consensus 35 ~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~ 100 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL 100 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh
Confidence 355555555555555221 2233333343332 3555555566666666653 345666665533
Q ss_pred cCCCcCHHHHHHHHHHHhccCCH-----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCC
Q 022131 108 KGICPTVATYSSVVKCLCSCGRI-----EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV 182 (302)
Q Consensus 108 ~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 182 (302)
. .++..+-...+.++...+.. ..+...+...... ++..+-...+.++...++ ..+...+..+.+.
T Consensus 101 ~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---- 170 (280)
T PRK09687 101 E--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---- 170 (280)
T ss_pred c--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC----
Confidence 3 24555555555555544321 2233333333322 355555566666666665 3455555555543
Q ss_pred CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHH
Q 022131 183 PNMHSYNILIGMFMALN-RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261 (302)
Q Consensus 183 ~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 261 (302)
++..+-...+.++.+.+ +.+.+...+..+.. .++..+-...+.++.+.|+ ..|+..+.+..+.+ + .....
T Consensus 171 ~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a 241 (280)
T PRK09687 171 PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLI 241 (280)
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHH
Confidence 23334444444555432 13345555555543 2455666666666666666 34555554444432 1 23345
Q ss_pred HHHHhhcchHHHHHHHHHhccc
Q 022131 262 YRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 262 ~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
+.++...|.. ++...+.++.+
T Consensus 242 ~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 242 IEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHhcCCH-hHHHHHHHHHh
Confidence 6666666664 45555555544
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.19 E-value=15 Score=27.27 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=59.1
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHhcCCH
Q 022131 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL--CVPNMHSYNILIGMFMALNRM 201 (302)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 201 (302)
..+.|+ ++|.+.|-++...+.--++..-..+...| ...+.+++..++.+..+... ..+|+..+..|++.+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 445555 67888888888776544555555555544 57788999999888766432 157899999999999999999
Q ss_pred HHHH
Q 022131 202 DMVR 205 (302)
Q Consensus 202 ~~a~ 205 (302)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8875
No 338
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.96 E-value=22 Score=29.00 Aligned_cols=67 Identities=12% Similarity=-0.006 Sum_probs=41.5
Q ss_pred CChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022131 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC--VPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
....+|..+.+.+.+.|+++.|...+..+...+.. ...+.....-+...-..|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556777777777777777777777777664310 11233334445555666777777777776665
No 339
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.63 E-value=37 Score=31.38 Aligned_cols=221 Identities=10% Similarity=0.019 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCH-------HHHHHHH-HHHHhcCCchhHHHHHHHHHhc----CCCcCHHHHHHHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDV-------TSFSIVL-HVYSRAHQPQLSLDKLNFMKEK----GICPTVATYSSVVKCL 124 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~ 124 (302)
..++.+|..+..+....-..|+. ..|+.+- ......|+++.|.++-+..... -..+....+.++..+.
T Consensus 428 ~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~ 507 (894)
T COG2909 428 QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAA 507 (894)
T ss_pred ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHH
Confidence 56677888888777654222221 1333332 2233478889998888777654 2233455667777788
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCChh---hHHHHH--HHHHccCCchH--HHHHHHHHHhC-----CCCCCCHHHHHHHH
Q 022131 125 CSCGRIEDAEELLGEMVRNGVCPSAE---TYNCFF--KEYRGRKDANG--AMKLYRQMKED-----GLCVPNMHSYNILI 192 (302)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~--~~~~~~~~~~~--a~~~~~~~~~~-----~~~~~~~~~~~~l~ 192 (302)
.-.|++++|..+..+..+..-..+.. .|..+. ..+...|+... ....+...... ....+-..+...+.
T Consensus 508 ~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll 587 (894)
T COG2909 508 HIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLL 587 (894)
T ss_pred HHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Confidence 88899999999888776542223333 333332 23455663322 22223222222 11011223444555
Q ss_pred HHHHhcCCHHHHHHH----HHHHHhCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----chhhHHHHH
Q 022131 193 GMFMALNRMDMVREI----WNDVKGSGLGPDLDSY--TMLIHGLCEKQKWKEACQYFVEMIEKGLLP----QKVTFETLY 262 (302)
Q Consensus 193 ~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~l~ 262 (302)
.++.+ .+.+..- +.--......|-...+ ..|+......|+.++|...++++......+ +..+-...+
T Consensus 588 ~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 588 RAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 55555 3333222 2222222222222222 367788889999999999999987653222 222222333
Q ss_pred H--HHhhcchHHHHHHHHHh
Q 022131 263 R--GLIQSDMLRTWRRLKKK 280 (302)
Q Consensus 263 ~--~~~~~g~~~~a~~~~~~ 280 (302)
+ .....|+.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 2 33467888777776655
No 340
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.40 E-value=6.7 Score=23.96 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=29.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 022131 197 ALNRMDMVREIWNDVKGSGLGPD--LDSYTMLIHGLCEKQKWKEACQYF 243 (302)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~ 243 (302)
..++.++|+..|....+.-..|. -.++..++.+|+..|++.+++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777777666522222 135566777777777777776654
No 341
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=83.27 E-value=28 Score=29.82 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=52.6
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 022131 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP-DLDSYTMLI 227 (302)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li 227 (302)
..+..++-+.|+.++|.+.++++.+..-...+......|+.++...+.+.++..++.+..+...+. -...|+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 345556668899999999999998764212244567788999999999999999999876543322 234555544
No 342
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.88 E-value=14 Score=29.89 Aligned_cols=50 Identities=10% Similarity=-0.067 Sum_probs=24.7
Q ss_pred HHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022131 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210 (302)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (302)
|.+.|.+++|++.|....... +.|.+++..-..+|.+...+..|+.-...
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 445555555555555544442 22555555555555555555544443333
No 343
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.74 E-value=37 Score=30.73 Aligned_cols=77 Identities=10% Similarity=0.237 Sum_probs=38.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHH
Q 022131 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTW 274 (302)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 274 (302)
+...|+..+|.++-.+.+ -||-..|-.=+.+++..+++++-.++-+..+ ++.-|..++.+|.+.|+.++|
T Consensus 694 li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA 763 (829)
T KOG2280|consen 694 LILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEA 763 (829)
T ss_pred HHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHH
Confidence 333444444444433332 2455555555555555565555444443321 134455566666666666666
Q ss_pred HHHHHhc
Q 022131 275 RRLKKKL 281 (302)
Q Consensus 275 ~~~~~~~ 281 (302)
.+++.+.
T Consensus 764 ~KYiprv 770 (829)
T KOG2280|consen 764 KKYIPRV 770 (829)
T ss_pred hhhhhcc
Confidence 6665543
No 344
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.14 E-value=19 Score=29.20 Aligned_cols=88 Identities=13% Similarity=0.020 Sum_probs=57.0
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCcc-cHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 022131 8 GWCKINRIDMAERFLGEMIERGVEP-NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86 (302)
Q Consensus 8 ~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (302)
-|.+.|.+++|++.|...... .| +..++..-..+|.+ .+.+..|+.-.+.....+ ..-...|..-+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk----------~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLK----------QKSFAQAEEDCEAAIALD-KLYVKAYSRRM 172 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHH----------HHHHHHHHHhHHHHHHhh-HHHHHHHHHHH
Confidence 478899999999999887765 45 77888888888998 777777766665555432 11122333333
Q ss_pred HHHHhcCCchhHHHHHHHHHhc
Q 022131 87 HVYSRAHQPQLSLDKLNFMKEK 108 (302)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~ 108 (302)
.+-...|...+|.+=++..++.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhh
Confidence 3444445556666656655554
No 345
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.09 E-value=28 Score=30.66 Aligned_cols=133 Identities=11% Similarity=0.081 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 022131 80 TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159 (302)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (302)
...+.+.+.+.+.|..++|+++ .+|... -.....+.|+++.|.++..+. .+..-|..|.++.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHH
Confidence 4556677777777777766543 223222 123345679999998877664 3677899999999
Q ss_pred HccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 022131 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239 (302)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 239 (302)
.+.+++..|.+.|...... ..|+-.+...|+.+....+-....+.|. .|. ..-+|...|+++++
T Consensus 677 l~~~~l~lA~EC~~~a~d~----------~~LlLl~t~~g~~~~l~~la~~~~~~g~-~N~-----AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARDL----------GSLLLLYTSSGNAEGLAVLASLAKKQGK-NNL-----AFLAYFLSGDYEEC 740 (794)
T ss_pred hhcccchhHHHHHHhhcch----------hhhhhhhhhcCChhHHHHHHHHHHhhcc-cch-----HHHHHHHcCCHHHH
Confidence 9999999999999876543 4567777788888777777776666653 232 33456778999999
Q ss_pred HHHHHHH
Q 022131 240 CQYFVEM 246 (302)
Q Consensus 240 ~~~~~~~ 246 (302)
.+++.+-
T Consensus 741 ~~lLi~t 747 (794)
T KOG0276|consen 741 LELLIST 747 (794)
T ss_pred HHHHHhc
Confidence 9888764
No 346
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.48 E-value=40 Score=30.27 Aligned_cols=185 Identities=11% Similarity=0.043 Sum_probs=108.0
Q ss_pred HHHHHHHHHH-hcCCCCC--HHHHHHHHHHHH-hcCCchhHHHHHHHHHhcCCCcCHH-----HHHHHHHHHhccCCHHH
Q 022131 62 NAEKVFDEMR-VRGIEPD--VTSFSIVLHVYS-RAHQPQLSLDKLNFMKEKGICPTVA-----TYSSVVKCLCSCGRIED 132 (302)
Q Consensus 62 ~a~~~~~~~~-~~~~~~~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~ 132 (302)
.|++.++-+. +..++|. ..++-.+...+. ...+++.|...+++.....-.++.. .-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 3444555555 3334443 334555566555 6788999999999875443222211 2235567777777666
Q ss_pred HHHHHHHHHHCC----CCCChhhHHHH-HHHHHccCCchHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHH--hcCCHHH
Q 022131 133 AEELLGEMVRNG----VCPSAETYNCF-FKEYRGRKDANGAMKLYRQMKEDGL--CVPNMHSYNILIGMFM--ALNRMDM 203 (302)
Q Consensus 133 a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~--~~~~~~~ 203 (302)
|...+++.++.- ..+-...+..+ +..+...++...|.+.++.+..... ..|...++-.++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 999888876541 11222333333 2233334799999999988866532 1444555555555544 4465677
Q ss_pred HHHHHHHHHhCC---------CCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHH
Q 022131 204 VREIWNDVKGSG---------LGPDLDSYTMLIHGL--CEKQKWKEACQYFVEMI 247 (302)
Q Consensus 204 a~~~~~~~~~~~---------~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~ 247 (302)
+.+..+.+.... ..|...+|..+++.+ ...|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777663321 234566777777665 56788777777766654
No 347
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.02 E-value=7.4 Score=28.70 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=36.2
Q ss_pred hcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 022131 197 ALNRMDMVREIWNDVKG-SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 253 (302)
Q Consensus 197 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 253 (302)
...+.+......+...+ ....|+..+|..++.++...|+.++|.+...++.. .-|
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 44554444443333322 12468888888888888888888888888888866 345
No 348
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=80.69 E-value=4.4 Score=31.92 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=31.5
Q ss_pred CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHH
Q 022131 218 PDLD-SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261 (302)
Q Consensus 218 ~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 261 (302)
|+.. -|+..|...++.||+++|+.++++..+.|+.--..+|-..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4444 4568888888888888888888888888876555555443
No 349
>PHA02875 ankyrin repeat protein; Provisional
Probab=80.68 E-value=26 Score=29.49 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCCHHH--HHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHH--HHHHHHHHHhccCCHHHHHHHHH
Q 022131 67 FDEMRVRGIEPDVTS--FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA--TYSSVVKCLCSCGRIEDAEELLG 138 (302)
Q Consensus 67 ~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~ 138 (302)
++.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++
T Consensus 18 v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 18 ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 444445565554322 223444455556644 334444455444322 11223444455677666554443
No 350
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=80.06 E-value=7.5 Score=21.07 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=30.8
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHH
Q 022131 6 IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLN 42 (302)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 42 (302)
+....+.|-..++..+++.|.+.|+..+...+..++.
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3445578888999999999999999888888888775
No 351
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=79.46 E-value=25 Score=26.62 Aligned_cols=181 Identities=10% Similarity=-0.034 Sum_probs=106.6
Q ss_pred CCchhHHHHHHHHHhcCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHH
Q 022131 93 HQPQLSLDKLNFMKEKGICP-TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171 (302)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 171 (302)
|-+..|.-=|.+.... .| -+.+||.+.--+...|+++.|.+.|+...+.+..-+-...|.-|. +.-.|++.-|.+=
T Consensus 79 GL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d 155 (297)
T COG4785 79 GLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDD 155 (297)
T ss_pred hHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHH
Confidence 3334444444444443 33 356788888888999999999999999998755433333333333 3456888888887
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 022131 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW-NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250 (302)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 250 (302)
+...-+.+...|-...|.-+.. +.-++.+|..-+ ++..+ .|..-|...|-.|.- |+.. ...+++++...
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~- 225 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKAD- 225 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-
Confidence 7777776522333333333322 334566666544 33433 355666655544432 2211 12233443321
Q ss_pred CCC-------chhhHHHHHHHHhhcchHHHHHHHHHhccccCC
Q 022131 251 LLP-------QKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286 (302)
Q Consensus 251 ~~p-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 286 (302)
-.- -..||-.+.+-+...|+.++|..+|+.....++
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 111 135777788889999999999999987655443
No 352
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.94 E-value=13 Score=27.33 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022131 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214 (302)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (302)
.|+..++..++.++...|+.++|.+...++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566667777777777777777776666666653
No 353
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=78.70 E-value=19 Score=25.23 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=9.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCC
Q 022131 121 VKCLCSCGRIEDAEELLGEMVRNG 144 (302)
Q Consensus 121 l~~~~~~~~~~~a~~~~~~~~~~~ 144 (302)
+..+...++.-.|.++++++.+.+
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhC
Confidence 333333333344444444444433
No 354
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.44 E-value=34 Score=27.72 Aligned_cols=138 Identities=10% Similarity=0.067 Sum_probs=91.5
Q ss_pred CcCHHHHHHHHHHHhccCC------------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhC
Q 022131 111 CPTVATYSSVVKCLCSCGR------------IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178 (302)
Q Consensus 111 ~~~~~~~~~ll~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (302)
+-|..+|-.++..--..-. .+.-+.++++..+.+. .+...+..+|..+.+..+.+...+-++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4478888888866443321 3455677888777743 56777888888888888888888888888887
Q ss_pred CCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhC------CC----CCCH-------HHHHHHHHHHHHcCCHHH
Q 022131 179 GLCVPNMHSYNILIGMFMA---LNRMDMVREIWNDVKGS------GL----GPDL-------DSYTMLIHGLCEKQKWKE 238 (302)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~------~~----~~~~-------~~~~~li~~~~~~g~~~~ 238 (302)
. +-+...|...+..... .-.++.+..+|.+.... +. .+.. ..+..+.....+.|..+.
T Consensus 95 ~--~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~ 172 (321)
T PF08424_consen 95 N--PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTER 172 (321)
T ss_pred C--CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHH
Confidence 5 4567778777776554 23577777777765542 21 0001 122333334457788888
Q ss_pred HHHHHHHHHHCCC
Q 022131 239 ACQYFVEMIEKGL 251 (302)
Q Consensus 239 a~~~~~~~~~~~~ 251 (302)
|+.+++-+.+.++
T Consensus 173 Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 173 AVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHc
Confidence 8888888887654
No 355
>PHA02875 ankyrin repeat protein; Provisional
Probab=78.30 E-value=40 Score=28.37 Aligned_cols=211 Identities=14% Similarity=0.121 Sum_probs=96.6
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCcccHHH--HHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH--
Q 022131 5 LIYGWCKINRIDMAERFLGEMIERGVEPNVVT--YNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT-- 80 (302)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 80 (302)
-+...++.|+.+-+..++ +.|..|+... -.+.+...+. .+..+ +.+.+.+.|..|+..
T Consensus 5 ~L~~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~----------~~~~~----~v~~Ll~~ga~~~~~~~ 66 (413)
T PHA02875 5 ALCDAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMK----------FRDSE----AIKLLMKHGAIPDVKYP 66 (413)
T ss_pred HHHHHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHH----------cCCHH----HHHHHHhCCCCccccCC
Confidence 344455677775554444 5566655432 2233333444 33333 444555556544432
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHH---HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChh---hHHH
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA---TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE---TYNC 154 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ 154 (302)
.....+...+..|+.+.+..+++ .|...+.. .-.+.+...+..|+.+ +++.+.+.|..|+.. -.+.
T Consensus 67 ~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tp 138 (413)
T PHA02875 67 DIESELHDAVEEGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSP 138 (413)
T ss_pred CcccHHHHHHHCCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCH
Confidence 12234556667788766555544 33211110 0112333344556654 445555666554432 2223
Q ss_pred HHHHHHccCCchHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHH
Q 022131 155 FFKEYRGRKDANGAMKLYRQMKEDGL--CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS---YTMLIHG 229 (302)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~ 229 (302)
+...+..|+.+-+..++ +.|. ...|....+. +...+..|+.+-+ +.+.+.|..|+... ....+..
T Consensus 139 -Lh~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~Tp-L~~A~~~g~~eiv----~~Ll~~ga~~n~~~~~~~~t~l~~ 208 (413)
T PHA02875 139 -LHLAVMMGDIKGIELLI----DHKACLDIEDCCGCTP-LIIAMAKGDIAIC----KMLLDSGANIDYFGKNGCVAALCY 208 (413)
T ss_pred -HHHHHHcCCHHHHHHHH----hcCCCCCCCCCCCCCH-HHHHHHcCCHHHH----HHHHhCCCCCCcCCCCCCchHHHH
Confidence 33344566655444443 3332 0112222233 3344556766544 44455565554322 1234444
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCch
Q 022131 230 LCEKQKWKEACQYFVEMIEKGLLPQK 255 (302)
Q Consensus 230 ~~~~g~~~~a~~~~~~~~~~~~~p~~ 255 (302)
.+..|+.+ +.+.+.+.|..++.
T Consensus 209 A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 209 AIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred HHHcCCHH----HHHHHHHCCcCcch
Confidence 45667654 34444556665553
No 356
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.87 E-value=5.3 Score=18.09 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 022131 223 YTMLIHGLCEKQKWKEACQYFVEMI 247 (302)
Q Consensus 223 ~~~li~~~~~~g~~~~a~~~~~~~~ 247 (302)
|..+...+...|+++.|...++...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444455555555555555555544
No 357
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.71 E-value=22 Score=31.13 Aligned_cols=128 Identities=14% Similarity=0.075 Sum_probs=82.3
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 022131 63 AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR 142 (302)
Q Consensus 63 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 142 (302)
+-.++--|.. .+.|--...|...-.....|+...|...+...........-.....|.+...+.|...+|-.++.+...
T Consensus 592 ~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~ 670 (886)
T KOG4507|consen 592 GSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALA 670 (886)
T ss_pred HHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHh
Confidence 4444444442 233444444444444445788888888887776553333334455666777777888888888887776
Q ss_pred CCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 022131 143 NGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194 (302)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (302)
.. ...+-++..+.+++....+.++|++.|++..+.. +.+...-+.|...
T Consensus 671 ~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~--~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 671 IN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT--TKCPECENSLKLI 719 (886)
T ss_pred hc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC--CCChhhHHHHHHH
Confidence 54 3456677778888888889999999998888775 4455555555443
No 358
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.22 E-value=22 Score=24.84 Aligned_cols=23 Identities=9% Similarity=0.082 Sum_probs=10.1
Q ss_pred HHHHHHHHhcCCchhHHHHHHHH
Q 022131 83 SIVLHVYSRAHQPQLSLDKLNFM 105 (302)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~ 105 (302)
|.++.-....++....+.+++.+
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHH
Confidence 34444444444444444444444
No 359
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=77.08 E-value=7.5 Score=22.48 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=12.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 022131 223 YTMLIHGLCEKQKWKEACQYFVEMI 247 (302)
Q Consensus 223 ~~~li~~~~~~g~~~~a~~~~~~~~ 247 (302)
.-.+|.++...|++++|.+++.++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344555555555555555555543
No 360
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=76.68 E-value=4.5 Score=27.60 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 022131 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFK 157 (302)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 157 (302)
|.-.+|..+|+.|++.|-+|| .|+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 344455555555555555444 3444443
No 361
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=76.64 E-value=39 Score=27.41 Aligned_cols=153 Identities=9% Similarity=0.023 Sum_probs=100.1
Q ss_pred cccHHHHHHHHHHHHhcccCCc--chhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 022131 31 EPNVVTYNVLLNGVCRRASLHP--SERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK 108 (302)
Q Consensus 31 ~~~~~~~~~ll~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 108 (302)
|-|+.+|-.++..--....... ......-.+.-+.++++..+.+ +.+...+-.+|..+.+..+.+...+-++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5578888888764333211111 1111344567788999988874 356778888899999998889999999999887
Q ss_pred CCCcCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHC------CC----CCC-------hhhHHHHHHHHHccCCchHH
Q 022131 109 GICPTVATYSSVVKCLCS---CGRIEDAEELLGEMVRN------GV----CPS-------AETYNCFFKEYRGRKDANGA 168 (302)
Q Consensus 109 ~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~------~~----~~~-------~~~~~~l~~~~~~~~~~~~a 168 (302)
... +...|...+..... .-.++....+|.+..+. +. .+. ...+..+.......|..+.|
T Consensus 95 ~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 95 NPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred CCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 432 67778887776654 23566777766665432 11 011 12233334445678999999
Q ss_pred HHHHHHHHhCCCCCCCH
Q 022131 169 MKLYRQMKEDGLCVPNM 185 (302)
Q Consensus 169 ~~~~~~~~~~~~~~~~~ 185 (302)
..+++.+.+-+...|..
T Consensus 174 va~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 174 VALWQALLEFNFFRPES 190 (321)
T ss_pred HHHHHHHHHHHcCCccc
Confidence 99999998887656654
No 362
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.82 E-value=34 Score=26.31 Aligned_cols=50 Identities=14% Similarity=-0.030 Sum_probs=20.1
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHccCCchHHHHHHHHHH
Q 022131 125 CSCGRIEDAEELLGEMVRNGVCPSA-ETYNCFFKEYRGRKDANGAMKLYRQMK 176 (302)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (302)
....+++.|+..|.+.+.. .|+. .-|..-+..+.+..+++.+..--+...
T Consensus 21 f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrral 71 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRAL 71 (284)
T ss_pred cchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH
Confidence 3334445555544444332 2333 222333334444444444444333333
No 363
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=75.80 E-value=24 Score=24.65 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCC
Q 022131 65 KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129 (302)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 129 (302)
++.+.+.+.|++++..- ..++..+.+.++.-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34456667787765543 45777888888889999999999998877777765555666665553
No 364
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=75.77 E-value=9.8 Score=21.99 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccc
Q 022131 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 236 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
.+...++++.++.. +-|..---.++.++...|++++|.++.+++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444444444332 23444445566677777777777766665543
No 365
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=75.59 E-value=4 Score=27.79 Aligned_cols=23 Identities=30% Similarity=0.634 Sum_probs=11.0
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHH
Q 022131 168 AMKLYRQMKEDGLCVPNMHSYNILIG 193 (302)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (302)
+..+|..|.+.|. +|| .|+.|+.
T Consensus 114 aY~VF~kML~~G~-pPd--dW~~Ll~ 136 (140)
T PF11663_consen 114 AYAVFRKMLERGN-PPD--DWDALLK 136 (140)
T ss_pred HHHHHHHHHhCCC-CCc--cHHHHHH
Confidence 4455555555554 443 3444443
No 366
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.00 E-value=40 Score=26.78 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHH
Q 022131 96 QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLG 138 (302)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 138 (302)
.+|+++|.-+.++.-+ ..+-..++.++-...+..+|...+.
T Consensus 150 ~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 150 RKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred hHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHH
Confidence 5688888888776322 3344556777777777777766554
No 367
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=74.99 E-value=26 Score=27.13 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=33.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHccCCchHHHHHHHHH
Q 022131 118 SSVVKCLCSCGRIEDAEELLGEMVRN----GV-CPSAETYNCFFKEYRGRKDANGAMKLYRQM 175 (302)
Q Consensus 118 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (302)
..+..-|.+.|++++|.++|+.+... |. .+...+...+..++...|+.+....+--++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34566666777777777777666421 22 233445555666666667766666554444
No 368
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=73.99 E-value=15 Score=21.49 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=36.8
Q ss_pred CcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 022131 30 VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91 (302)
Q Consensus 30 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (302)
+.|+...++.++..+++ ...+++++..+.+..+.|. .+..+|---++.+++
T Consensus 4 v~~~~~l~~Ql~el~Ae----------d~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAE----------DHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 35667788888888888 8888888888888888874 356666666666554
No 369
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=73.92 E-value=7.7 Score=30.66 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=27.5
Q ss_pred CCHH-HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHH
Q 022131 77 PDVT-SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY 117 (302)
Q Consensus 77 ~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 117 (302)
||.. -|+..|....+.||+++|++++++.++.|+.--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4443 3567777777788888888888888777765444443
No 370
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.61 E-value=52 Score=27.46 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=40.2
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCcccHH--HHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc
Q 022131 7 YGWCKINRIDMAERFLGEMIERGVEPNVV--TYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73 (302)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 73 (302)
..+...+++..|.++++.+... ++++.. .+..+..+|.... .-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD--------~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWD--------RFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHH--------ccCHHHHHHHHHHHHHH
Confidence 3455889999999999999987 555554 4555556665532 33466788888877654
No 371
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.19 E-value=47 Score=26.33 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=29.0
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCcCHHH-------HHHHHHHHhccCCHHHHHHH
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT-------YSSVVKCLCSCGRIEDAEEL 136 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~ll~~~~~~~~~~~a~~~ 136 (302)
+.+-..+.+++++|+..+.++...|+..+..+ ...+...|.+.|+....-+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 34445566677777777777777765544333 33444555555555444333
No 372
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.91 E-value=52 Score=26.23 Aligned_cols=73 Identities=8% Similarity=-0.015 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCchhhHH
Q 022131 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE-----KGLLPQKVTFE 259 (302)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~ 259 (302)
.+++.....|..+|.+.+|.++.+..... -+.+...+-.++..+...|+--.|..-++++.+ .|+..|...++
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 34566678888999999999999888876 356777888888899999987777777776643 37766655443
No 373
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.66 E-value=50 Score=25.95 Aligned_cols=157 Identities=11% Similarity=0.141 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHhc---CC--CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhc-CCCcCHH----HHHHHHHHHhc
Q 022131 57 EKTIRNAEKVFDEMRVR---GI--EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK-GICPTVA----TYSSVVKCLCS 126 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~----~~~~ll~~~~~ 126 (302)
.+.+++....|.++... .+ .-+....|.++...+.+.+.+....+++.-.+. .-..+.. |-+.+...|..
T Consensus 78 l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd 157 (440)
T KOG1464|consen 78 LGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFD 157 (440)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhhee
Confidence 34455555555555431 11 123345666666666666666555555543222 0001111 33567778888
Q ss_pred cCCHHHHHHHHHHHHHCCCCC----C-------hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHH--
Q 022131 127 CGRIEDAEELLGEMVRNGVCP----S-------AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG-- 193 (302)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~~~----~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-- 193 (302)
.+++.....++.++.+..-.. | ...|..=|+.|....+-.+...++++.......-|.+.....+-.
T Consensus 158 ~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECG 237 (440)
T KOG1464|consen 158 RGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECG 237 (440)
T ss_pred HHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcC
Confidence 888888889998888763221 1 345666677788888888888888877654433566554443322
Q ss_pred --HHHhcCCHHHHHH-HHHHHHh
Q 022131 194 --MFMALNRMDMVRE-IWNDVKG 213 (302)
Q Consensus 194 --~~~~~~~~~~a~~-~~~~~~~ 213 (302)
...+.|++++|.. +|+....
T Consensus 238 GKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 238 GKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred CccccccchHHHHHhHHHHHHhc
Confidence 2346688887754 4554443
No 374
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.69 E-value=73 Score=27.50 Aligned_cols=110 Identities=16% Similarity=0.036 Sum_probs=72.1
Q ss_pred HHHHccCCchHHHHHHHHHHhC---CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCC---
Q 022131 157 KEYRGRKDANGAMKLYRQMKED---GL-CVP---NMHSYNILIGMFMALNRMDMVREIWNDVKG-------SGLGPD--- 219 (302)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~---~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~--- 219 (302)
+.+.-.|++.+|.+++...--. |. ..| +-..||.+...+.+.|.+..+..+|.+..+ .|++|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 3456788888888887654222 21 111 112235555556667777777776666553 455553
Q ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhc
Q 022131 220 --------LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268 (302)
Q Consensus 220 --------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 268 (302)
..+||.= -.|...|++-.|.+.|.+.... +.-++..|-.+..+|.-.
T Consensus 328 tls~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 2345543 3467899999999999998775 677889999999999854
No 375
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.68 E-value=97 Score=28.89 Aligned_cols=228 Identities=11% Similarity=0.058 Sum_probs=118.5
Q ss_pred HHhcCCcchHHHHHHHHHhCCCcccHH-------HHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc----CCCC
Q 022131 9 WCKINRIDMAERFLGEMIERGVEPNVV-------TYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR----GIEP 77 (302)
Q Consensus 9 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 77 (302)
....+++.+|..+..++...-..|+.. .|+.+-....-. .++++.+.++-+..... -..+
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~---------~~~~e~a~~lar~al~~L~~~~~~~ 495 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN---------RGDPEEAEDLARLALVQLPEAAYRS 495 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHhcccccchh
Confidence 345678999999998887652222221 333333322221 45566666666555443 2344
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHH---HHH--HHHHhccCCH--HHHHHHHHHHHHCC---C--
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY---SSV--VKCLCSCGRI--EDAEELLGEMVRNG---V-- 145 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l--l~~~~~~~~~--~~a~~~~~~~~~~~---~-- 145 (302)
....+..+..+..-.|++++|..+..+..+..-.-+...+ ..+ ...+...|.. ++.+..|....... .
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~ 575 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR 575 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc
Confidence 5667777888888899999999888776554222232222 222 2234456633 33333344333220 0
Q ss_pred -CCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----
Q 022131 146 -CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY--NILIGMFMALNRMDMVREIWNDVKGSGLGP---- 218 (302)
Q Consensus 146 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---- 218 (302)
.+-..++..+..++.+..--+......-+........|-.... ..|+......|+.++|...+.++......+
T Consensus 576 ~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~ 655 (894)
T COG2909 576 HEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHV 655 (894)
T ss_pred chhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 1223455566666655221111111111121111112222222 367778888999999999998877642222
Q ss_pred CHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 022131 219 DLDSYTMLIHG--LCEKQKWKEACQYFVE 245 (302)
Q Consensus 219 ~~~~~~~li~~--~~~~g~~~~a~~~~~~ 245 (302)
+...-...+.. -...|+...+.....+
T Consensus 656 ~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 656 DYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 22222222322 2456777777776665
No 376
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.59 E-value=41 Score=26.07 Aligned_cols=60 Identities=8% Similarity=0.029 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022131 188 YNILIGMFMALNRMDMVREIWNDVKG----SG-LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247 (302)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 247 (302)
...+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+.-++.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34556667777777777777776542 12 22344555666677777777777776655543
No 377
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.65 E-value=47 Score=24.86 Aligned_cols=88 Identities=13% Similarity=0.077 Sum_probs=48.2
Q ss_pred HHccCCchHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 022131 159 YRGRKDANGAMKLYRQMKEDGLCVPN-----MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233 (302)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 233 (302)
+...|++++|..-|.+....- ++. ...|..-..++.+.+.++.|..-..+.++.+.. .......=..+|-+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 345666666666666666552 222 123334445566667777777666666654211 112222223456666
Q ss_pred CCHHHHHHHHHHHHHC
Q 022131 234 QKWKEACQYFVEMIEK 249 (302)
Q Consensus 234 g~~~~a~~~~~~~~~~ 249 (302)
.++++|+.=|.++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 7777777777777663
No 378
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=68.11 E-value=31 Score=22.64 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=30.1
Q ss_pred chHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 022131 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244 (302)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 244 (302)
.++|..|.+.+...+ .....+-.+-+..+.+.|++++| +..-.. ...||...|-.|-. .+.|-.+++...+.
T Consensus 22 H~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~-~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 22 HQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEA---LLLPQC-HCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHH---HHHHTT-S--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHH---HHhccc-CCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 355555555555543 12222223333445555555555 111111 12344444433322 35555555555555
Q ss_pred HH
Q 022131 245 EM 246 (302)
Q Consensus 245 ~~ 246 (302)
++
T Consensus 94 rl 95 (116)
T PF09477_consen 94 RL 95 (116)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 379
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=67.86 E-value=1e+02 Score=32.34 Aligned_cols=152 Identities=9% Similarity=0.003 Sum_probs=93.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 022131 119 SVVKCLCSCGRIEDAEELLGEMVRNGV--CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196 (302)
Q Consensus 119 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (302)
.+..+-.+++.+..|.-.++.-..... ......+..+...|...++++++.-+...-.. .|+ ...-|....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~s---l~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPS---LYQQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Ccc---HHHHHHHHH
Confidence 455566778888888888888311100 11233444445588899999888877765221 233 233444566
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHH-HHHHhhcchHHHHH
Q 022131 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL-YRGLIQSDMLRTWR 275 (302)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~ 275 (302)
..|+++.|...|+.+.+.+ ++...+++-++......|.++.++...+-.... ..+....++.+ +.+-.+.++++...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 7899999999999998863 334667777777767777777777655544332 23333333333 34446777777766
Q ss_pred HHHH
Q 022131 276 RLKK 279 (302)
Q Consensus 276 ~~~~ 279 (302)
....
T Consensus 1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred hhhh
Confidence 6654
No 380
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.74 E-value=1.1e+02 Score=28.80 Aligned_cols=37 Identities=11% Similarity=0.036 Sum_probs=19.6
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 022131 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160 (302)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (302)
|......+-+..+++.+....-.++....+.++..|+
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 3444455556666666655433445555555555554
No 381
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=67.72 E-value=60 Score=25.71 Aligned_cols=150 Identities=15% Similarity=0.153 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhc----cC
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR----AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS----CG 128 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~ 128 (302)
...+..+...+......+ +......+...|.. ..+...|..++...-+.|.. .....+...|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCccc
Confidence 566777777887777643 22344444444443 34567788888877776633 233345555544 44
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC-------CchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----
Q 022131 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK-------DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA---- 197 (302)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 197 (302)
+..+|..++++..+.|..+...+...+-..|.... +...|...+.+....+ +......+...|..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----CHHHHHHHHHHHHcCCCC
Confidence 88899999999988876443233444444444331 2236777777777765 22333444444432
Q ss_pred cCCHHHHHHHHHHHHhCCC
Q 022131 198 LNRMDMVREIWNDVKGSGL 216 (302)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~ 216 (302)
..+..+|...|....+.|.
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC
Confidence 3467788888888877754
No 382
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=67.69 E-value=30 Score=30.70 Aligned_cols=62 Identities=5% Similarity=0.135 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 141 (302)
+...-.-++..|.+.|-.+.+.++.+.+-..-. ...-|..-+..+.+.|+...+-.+.+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344445555555555555555555554433211 12234444555555555555444444443
No 383
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=67.46 E-value=29 Score=21.99 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=6.7
Q ss_pred HccCCchHHHHHHHHH
Q 022131 160 RGRKDANGAMKLYRQM 175 (302)
Q Consensus 160 ~~~~~~~~a~~~~~~~ 175 (302)
...|++++|...+++.
T Consensus 52 ~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 52 RRFGHYEEALQALEEA 67 (94)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 3344444444444433
No 384
>PF13934 ELYS: Nuclear pore complex assembly
Probab=67.26 E-value=54 Score=25.03 Aligned_cols=106 Identities=13% Similarity=0.111 Sum_probs=61.9
Q ss_pred HHHHHHHHh--ccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 022131 117 YSSVVKCLC--SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194 (302)
Q Consensus 117 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (302)
|...++++. ..+++++|.+.+-.- .+. ...-..++.++...|+.+.|+++++...-.. .+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~--~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l---~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLI--PWFPDKILQALLRRGDPKLALRYLRAVGPPL---SSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCC--cccHHHHHHHHHHCCChhHHHHHHHhcCCCC---CCHHHHHHHHHH
Confidence 444555544 346667776666222 121 2223357777888888888888888765432 233333444444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 022131 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234 (302)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 234 (302)
..++.+.+|..+-+...+. -....+..++..+....
T Consensus 151 -La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHHHh
Confidence 5667888888777665542 12456777777766544
No 385
>PF13934 ELYS: Nuclear pore complex assembly
Probab=67.16 E-value=54 Score=25.02 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=52.3
Q ss_pred HHHHHHHH--hcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 022131 83 SIVLHVYS--RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160 (302)
Q Consensus 83 ~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (302)
...++++. ..++++.|.+.+..- .+.|+ ...-++..+...|+.+.|..+++...-.. .+......++.. .
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-L 151 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELLSHP---SLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-L 151 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHhCCC---CCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-H
Confidence 33444443 445566666655221 12222 12246666666788887877777654221 122222333333 5
Q ss_pred ccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 022131 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196 (302)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (302)
.++...+|..+-+...+.. ....+..++..+.
T Consensus 152 a~~~v~EAf~~~R~~~~~~----~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPDEL----RRRLFEQLLEHCL 183 (226)
T ss_pred HcCCHHHHHHHHHhCchhh----hHHHHHHHHHHHH
Confidence 6677777777766665532 1344555555544
No 386
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=67.10 E-value=49 Score=24.49 Aligned_cols=55 Identities=5% Similarity=-0.028 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC--------------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 022131 190 ILIGMFMALNRMDMVREIWNDVKGSGLG--------------PDLDSYTMLIHGLCEKQKWKEACQYFV 244 (302)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~li~~~~~~g~~~~a~~~~~ 244 (302)
+++..|.+.-+|.+..++++.+.+..+. +.-..-|.....+.+.|..+.|+.+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 4455666666777777777766553221 223445555566666666666666665
No 387
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=66.32 E-value=68 Score=25.82 Aligned_cols=57 Identities=9% Similarity=-0.017 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
..++....+.|+.+.-..+++..... ++...-..++.+.+...+.+...++++....
T Consensus 173 ~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 173 WAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 33444444444443333333333321 2344444445554444455444444444444
No 388
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=65.12 E-value=23 Score=31.40 Aligned_cols=18 Identities=17% Similarity=0.157 Sum_probs=10.8
Q ss_pred HHHHHHhcCCcchHHHHH
Q 022131 5 LIYGWCKINRIDMAERFL 22 (302)
Q Consensus 5 li~~~~~~g~~~~a~~~~ 22 (302)
.+..+.-.|.++.|.+++
T Consensus 154 ~v~~lvlrG~~~~a~~lL 171 (566)
T PF07575_consen 154 YVQRLVLRGLFDQARQLL 171 (566)
T ss_dssp HHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 455566666676666666
No 389
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=64.91 E-value=53 Score=24.11 Aligned_cols=22 Identities=9% Similarity=0.200 Sum_probs=14.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 022131 192 IGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
+-.|.+.|.+++|.+++++..+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3456666777777777766655
No 390
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=64.71 E-value=51 Score=23.80 Aligned_cols=47 Identities=4% Similarity=-0.086 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 022131 190 ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236 (302)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 236 (302)
.++......+..-.|.++++.+.+.+..++..|--..+..+...|-.
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 33444444455556777777776666555555555555666666543
No 391
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=64.65 E-value=81 Score=26.14 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=45.2
Q ss_pred HHHHHHHHccCCch---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 022131 153 NCFFKEYRGRKDAN---GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220 (302)
Q Consensus 153 ~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (302)
..++..+...++.. +|.-+++...... +.|...-..++..|...|-.+.|...|..+.-+.++-|.
T Consensus 184 ~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s--~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DT 252 (365)
T PF09797_consen 184 HSLLDLYSKTKDSEYLLQAIALLEHALKKS--PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDT 252 (365)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHH
Confidence 34444444455443 5666777776665 667777788899999999999999999876544444333
No 392
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=64.57 E-value=76 Score=25.77 Aligned_cols=19 Identities=11% Similarity=0.300 Sum_probs=11.3
Q ss_pred CchhHHHHHHHHHhcCCCc
Q 022131 94 QPQLSLDKLNFMKEKGICP 112 (302)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~ 112 (302)
+.+....++..+.+.+..|
T Consensus 37 ~~~~~e~l~~~Ird~~Map 55 (393)
T KOG0687|consen 37 KAAAREKLLAAIRDEDMAP 55 (393)
T ss_pred CHHHHHHHHHHHHhcccch
Confidence 4455566666667665544
No 393
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=64.16 E-value=64 Score=24.82 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=42.0
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc
Q 022131 5 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73 (302)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 73 (302)
+....-+.|+++++.+.+.++...+...+..--+.+-.+|-.. -+....+.+++..+.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~---------i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNV---------IGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhc---------cccchHHHHhhhhHhhh
Confidence 4566778899999999999999888888887777777777553 45556666666665543
No 394
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=63.84 E-value=38 Score=22.02 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 022131 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245 (302)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 245 (302)
++|..|-+.+...+. ....+-.+-+..+...|++++|..+.+.. ..||...|-.|-. .+.|..+++..-+.+
T Consensus 22 qEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 22 QEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 455555555544431 12222222334455666666666655544 2456665554433 355555555555555
Q ss_pred HHHCC
Q 022131 246 MIEKG 250 (302)
Q Consensus 246 ~~~~~ 250 (302)
|-..|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 54443
No 395
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.58 E-value=48 Score=23.20 Aligned_cols=99 Identities=13% Similarity=0.190 Sum_probs=62.9
Q ss_pred HHHhcCCCcCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHccCC-chHHHHHHHHH
Q 022131 104 FMKEKGICPTVA--TYSSVVKCLCSCGRIEDAEELLGEMVRNG-----VCPSAETYNCFFKEYRGRKD-ANGAMKLYRQM 175 (302)
Q Consensus 104 ~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~ 175 (302)
.|.+.+..++.. ..+.++......+++...+.+++.+.... -..+...|.+++.+.+...- .--+..+|..+
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 344444444433 35666666666777777777777664321 02466788888888866555 34567777888
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 022131 176 KEDGLCVPNMHSYNILIGMFMALNRMDM 203 (302)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (302)
.+.+. ++++.-|..++.++.+....+.
T Consensus 107 k~~~~-~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 107 KKNDI-EFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred HHcCC-CCCHHHHHHHHHHHHcCCCCcc
Confidence 77665 7888888888888776544433
No 396
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=63.56 E-value=24 Score=19.66 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=15.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCchhh
Q 022131 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257 (302)
Q Consensus 226 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 257 (302)
+.-++.+.|++++|.+..+.+.+ +.|+-.-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHH
Confidence 34455566666666666666655 3454433
No 397
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=63.42 E-value=54 Score=23.66 Aligned_cols=13 Identities=23% Similarity=0.215 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHCC
Q 022131 132 DAEELLGEMVRNG 144 (302)
Q Consensus 132 ~a~~~~~~~~~~~ 144 (302)
.|.++++.+.+.+
T Consensus 43 Sa~eI~~~L~~~~ 55 (169)
T PRK11639 43 SAYDLLDLLREAE 55 (169)
T ss_pred CHHHHHHHHHhhC
Confidence 3444444444333
No 398
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=63.14 E-value=91 Score=28.16 Aligned_cols=91 Identities=12% Similarity=0.099 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhc--CCCcCHHHHHHHHHHHhccCCHH------HHHHHHHHHHHCCCCCChhhHHHH
Q 022131 84 IVLHVYSRAHQPQLSLDKLNFMKEK--GICPTVATYSSVVKCLCSCGRIE------DAEELLGEMVRNGVCPSAETYNCF 155 (302)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 155 (302)
+|+.+|...|++..+.++++.+... |-+.-...+|..++-..+.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7899999999999999999998765 33334556888888889998764 3444444444 44678888888
Q ss_pred HHHHHccCCchHHHHHHHHHHh
Q 022131 156 FKEYRGRKDANGAMKLYRQMKE 177 (302)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~ 177 (302)
+.+-..--+.....-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7766554444444445555544
No 399
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=63.13 E-value=28 Score=20.38 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcc
Q 022131 217 GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269 (302)
Q Consensus 217 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 269 (302)
.|....++.++..++...-.++++..+.++.+.|. .+..+|..-++.+++..
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 35556677777777777777777777777777664 45556665566555543
No 400
>PRK09687 putative lyase; Provisional
Probab=62.70 E-value=76 Score=25.18 Aligned_cols=183 Identities=11% Similarity=0.059 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCc-----hhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 022131 62 NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP-----QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136 (302)
Q Consensus 62 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 136 (302)
++...+..+... .|+..+-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ++++..
T Consensus 90 ~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~ 163 (280)
T PRK09687 90 NVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPL 163 (280)
T ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHH
Confidence 344445544333 34555555555555444321 122333333222 2366666677778877776 456666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccC-CchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 022131 137 LGEMVRNGVCPSAETYNCFFKEYRGRK-DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215 (302)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (302)
+-.+.+. ++...-...+.++...+ +...+...+..+... ++..+-...+.++.+.++. .|...+-...+.+
T Consensus 164 L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D----~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~ 235 (280)
T PRK09687 164 LINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD----KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG 235 (280)
T ss_pred HHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC----CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC
Confidence 6666653 45556666666666553 244666666666643 5666777888888888884 5555555555542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHh
Q 022131 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266 (302)
Q Consensus 216 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 266 (302)
+ .....+.++...|+. +|...+..+.+. .||..+-...+.+|.
T Consensus 236 ---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 236 ---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred ---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 2 234677888888885 688888887763 357776666666654
No 401
>PRK09857 putative transposase; Provisional
Probab=62.64 E-value=79 Score=25.31 Aligned_cols=69 Identities=12% Similarity=0.055 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccCCCcccch
Q 022131 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEF 292 (302)
Q Consensus 223 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 292 (302)
+..++......++.++..++++.+.+. ..........+..-+.+.|..+++.++.++|...|+..+...
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~I~ 277 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLADIM 277 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 344444445556666666666665543 333334455566666666776777777777777777765433
No 402
>PRK09462 fur ferric uptake regulator; Provisional
Probab=62.48 E-value=51 Score=23.07 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 022131 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163 (302)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 163 (302)
..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555544444334444444444444333
No 403
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=62.02 E-value=82 Score=25.34 Aligned_cols=43 Identities=14% Similarity=0.390 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022131 170 KLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
++|+.+.+.++ .|.-..+..+.-.+.+.=.+.++..+|+.+..
T Consensus 264 EL~~~L~~~~i-~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEI-HPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCC-CccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 34455554444 55555555555555555555555566655554
No 404
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=61.97 E-value=66 Score=24.89 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHh
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE 107 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 107 (302)
...+.+|...++.-... ..+..+...+..++...|+...+.++++.+.+
T Consensus 112 ~~~i~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~ 160 (246)
T PF07678_consen 112 ENAINKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNS 160 (246)
T ss_dssp HHHHHHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 45566777777665332 34666666666666777777777777777654
No 405
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=61.91 E-value=78 Score=25.47 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----------cCCchHH
Q 022131 99 LDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG----------RKDANGA 168 (302)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a 168 (302)
.++++.+.+.++.|.-.++.=+.-.+.+.=.+.+++.+|+.+... ..-+..++..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 567788888888888887777776777777888888888888753 3336666666653 5777777
Q ss_pred HHHHHH
Q 022131 169 MKLYRQ 174 (302)
Q Consensus 169 ~~~~~~ 174 (302)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 776653
No 406
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.61 E-value=38 Score=21.28 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=4.9
Q ss_pred CCchHHHHHHHHH
Q 022131 163 KDANGAMKLYRQM 175 (302)
Q Consensus 163 ~~~~~a~~~~~~~ 175 (302)
|+.+.|.+++..+
T Consensus 50 g~~~~ar~LL~~L 62 (88)
T cd08819 50 GNESGARELLKRI 62 (88)
T ss_pred CcHHHHHHHHHHh
Confidence 3333333333333
No 407
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=61.40 E-value=88 Score=25.43 Aligned_cols=133 Identities=11% Similarity=0.011 Sum_probs=76.9
Q ss_pred CCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHH
Q 022131 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG----SGLGPDLD 221 (302)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~ 221 (302)
..|...++.|..+ +....++..+..+...+.....--...+......|++.|+.+.|.+.+.+-.+ .|.+.|+.
T Consensus 67 ~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVv 144 (393)
T KOG0687|consen 67 KLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVV 144 (393)
T ss_pred eccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhH
Confidence 3455545544432 22233444444555554422122344566777889999999999988776443 56777766
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCchh----hHHHHHHHHhhcchHHHHHHHHHhcc
Q 022131 222 SYTMLIHG-LCEKQKWKEACQYFVEMIEKGLLPQKV----TFETLYRGLIQSDMLRTWRRLKKKLD 282 (302)
Q Consensus 222 ~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (302)
.+..=+.. |....-..+-++..+.+.+.|-..+.. +|..+. |..-.++.+|-.+|-...
T Consensus 145 f~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 145 FYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 55443332 344444566666777777777665553 344332 335567888888776544
No 408
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=61.19 E-value=38 Score=22.60 Aligned_cols=47 Identities=11% Similarity=0.037 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccC
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL 50 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 50 (302)
.++..+...+..-.|.++++.+.+.+...+..|.-.-|+.+.+.|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 56778888888999999999999988888888777777777775543
No 409
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=60.85 E-value=69 Score=24.04 Aligned_cols=91 Identities=12% Similarity=0.058 Sum_probs=57.9
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 022131 122 KCLCSCGRIEDAEELLGEMVRNGVCPS----AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197 (302)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (302)
+-+.+.|++++|..-|...++.-.... ...|..-..++.+.+.++.|+.--....+.+ +........-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 345667888888888887777532211 2233333445667777777777777766665 3334444444567777
Q ss_pred cCCHHHHHHHHHHHHhC
Q 022131 198 LNRMDMVREIWNDVKGS 214 (302)
Q Consensus 198 ~~~~~~a~~~~~~~~~~ 214 (302)
...++.|++=|.++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 88888888888888775
No 410
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=60.48 E-value=44 Score=21.71 Aligned_cols=16 Identities=19% Similarity=-0.095 Sum_probs=7.2
Q ss_pred HHhcCCchhHHHHHHH
Q 022131 89 YSRAHQPQLSLDKLNF 104 (302)
Q Consensus 89 ~~~~~~~~~a~~~~~~ 104 (302)
+...|++++|..+.+.
T Consensus 49 LmNrG~Yq~Al~l~~~ 64 (115)
T TIGR02508 49 LMNRGDYQSALQLGNK 64 (115)
T ss_pred HHccchHHHHHHhcCC
Confidence 3444444444444433
No 411
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=60.47 E-value=88 Score=25.16 Aligned_cols=146 Identities=10% Similarity=0.134 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHCCC----CCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 022131 130 IEDAEELLGEMVRNGV----CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVR 205 (302)
Q Consensus 130 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 205 (302)
.+.|.+.|++....+. ..++.....++....+.|+.+.-..++..... .++...-..++.+.+...+.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHhhhccCCHHHHH
Confidence 4567777777776422 34555666666666777775554445444443 346666777888888888888888
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHH---HCCCCCchhhHHHHHHHHh----hcchHHHHH
Q 022131 206 EIWNDVKGSG-LGPDLDSYTMLIHGLCEKQK--WKEACQYFVEMI---EKGLLPQKVTFETLYRGLI----QSDMLRTWR 275 (302)
Q Consensus 206 ~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~---~~~~~p~~~~~~~l~~~~~----~~g~~~~a~ 275 (302)
++++.....+ +++. . ...++.++...+. .+.+.+.+..=- .....++......++..+. .....++..
T Consensus 222 ~~l~~~l~~~~v~~~-d-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 299 (324)
T PF11838_consen 222 RLLDLLLSNDKVRSQ-D-IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELE 299 (324)
T ss_dssp HHHHHHHCTSTS-TT-T-HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHH
T ss_pred HHHHHHcCCcccccH-H-HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHH
Confidence 8888887753 3332 2 3334444442333 366666655321 1123333335555555433 344556666
Q ss_pred HHHHhc
Q 022131 276 RLKKKL 281 (302)
Q Consensus 276 ~~~~~~ 281 (302)
++++.-
T Consensus 300 ~f~~~~ 305 (324)
T PF11838_consen 300 EFFEDK 305 (324)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 666443
No 412
>PRK11619 lytic murein transglycosylase; Provisional
Probab=60.43 E-value=1.3e+02 Score=27.28 Aligned_cols=116 Identities=10% Similarity=0.008 Sum_probs=63.5
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCC--hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 022131 127 CGRIEDAEELLGEMVRNG-VCPS--AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM 203 (302)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (302)
..+.+.|..++....... ..+. ...+..+.......+...++...+...... ..+......-+....+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 345677777777764332 2111 122333333333332245555555554333 2344455555666667788877
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022131 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246 (302)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 246 (302)
+...+..|.... .-...-.-.+.+++...|+.++|...|+.+
T Consensus 331 ~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 331 LNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777765432 223344445666666678888888877775
No 413
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=60.40 E-value=40 Score=22.22 Aligned_cols=48 Identities=10% Similarity=0.040 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCC
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLH 51 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 51 (302)
.++..+...+..-.|.++++.+.+.+..++..|....|+.+.+.|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 466777777888899999999998887778888777788888765543
No 414
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=59.40 E-value=65 Score=24.91 Aligned_cols=81 Identities=10% Similarity=0.160 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------C------------CCH
Q 022131 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL-------------G------------PDL 220 (302)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~------------~~~ 220 (302)
++|..+++.-... ..+..+...+..++...|+...+.++++.+..... . .++
T Consensus 116 ~kA~~~L~~~~~~---~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~v 192 (246)
T PF07678_consen 116 NKALNYLERHLDN---IQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDV 192 (246)
T ss_dssp HHHHHHHHHHHGC---TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHH
T ss_pred HHHHHHHHHhccc---cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHH
Confidence 3444555444222 35555555555556666666666666666553210 0 012
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 022131 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 221 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 249 (302)
++-.-.+-++.+.++.+.+..+.+-+.++
T Consensus 193 EtTaYaLLa~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 193 ETTAYALLALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 33333444555668888888888888764
No 415
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=58.32 E-value=94 Score=24.81 Aligned_cols=115 Identities=12% Similarity=0.086 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHh----cCCCcCHHHHHH-HHHHHhccCCHHHHHHHHHHHHHCCCCCC---
Q 022131 77 PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE----KGICPTVATYSS-VVKCLCSCGRIEDAEELLGEMVRNGVCPS--- 148 (302)
Q Consensus 77 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 148 (302)
--...+..+...|++.++.+.+.++..+..+ .|.+.|....-. +.-.|....-+++.++..+.+.+.|..-+
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 3466788899999999999999888776544 366655443222 22234444456778888888888875322
Q ss_pred -hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 022131 149 -AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194 (302)
Q Consensus 149 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (302)
..+|.-+. +....++.+|-.++......-. .....+|...+..
T Consensus 193 RyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~tF~-S~El~sY~~~vrY 236 (412)
T COG5187 193 RYKVYKGIF--KMMRRNFKEAAILLSDILPTFE-SSELISYSRAVRY 236 (412)
T ss_pred hHHHHHHHH--HHHHHhhHHHHHHHHHHhcccc-ccccccHHHHHHH
Confidence 22333332 2344567788887777765432 2333344444443
No 416
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.21 E-value=44 Score=20.98 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 022131 169 MKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239 (302)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 239 (302)
.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. .| | ..|..++.++...|+-+-|
T Consensus 22 ~~v~d~ll~~~i--lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGL--LTEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCC--CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhh
Confidence 344555555543 222222333222234455666666666555 32 2 2455555555555554443
No 417
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=57.90 E-value=61 Score=22.49 Aligned_cols=52 Identities=10% Similarity=0.076 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 022131 57 EKTIRNAEKVFDEMRVRG-IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK 108 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 108 (302)
..++.+.+.+++++.... ........-.|.-++.+.++++.+.++.+.+.+.
T Consensus 48 ~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 48 TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 455666666666666521 1112233334455566666666666666666654
No 418
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=56.90 E-value=48 Score=20.98 Aligned_cols=53 Identities=13% Similarity=-0.009 Sum_probs=30.8
Q ss_pred HhcCCHHHHHHHHHHHHh----CCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 196 MALNRMDMVREIWNDVKG----SGLGPD----LDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~----~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
.+.|++..|.+.+.+..+ .+..+. ....-.+.......|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 466777777655554433 222221 12222344556677889999888888765
No 419
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=56.83 E-value=20 Score=16.58 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 022131 201 MDMVREIWNDVK 212 (302)
Q Consensus 201 ~~~a~~~~~~~~ 212 (302)
.+.|..+|+++.
T Consensus 3 ~~~~r~i~e~~l 14 (33)
T smart00386 3 IERARKIYERAL 14 (33)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 420
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=56.78 E-value=1.1e+02 Score=25.01 Aligned_cols=109 Identities=16% Similarity=0.254 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHH--HHHHHHHhccCCHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY--SSVVKCLCSCGRIEDAE 134 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~ 134 (302)
...+.+|+++|++..+.+ ..+|+ +..+...--...+.+.+.+. +..+| ..+.-+..+.|+..+|.
T Consensus 229 a~Ti~~AE~l~k~ALka~----e~~yr-------~sqq~qh~~~~~da~~rRDt--nvl~YIKRRLAMCARklGrlrEA~ 295 (556)
T KOG3807|consen 229 ATTIVDAERLFKQALKAG----ETIYR-------QSQQCQHQSPQHEAQLRRDT--NVLVYIKRRLAMCARKLGRLREAV 295 (556)
T ss_pred hhhHHHHHHHHHHHHHHH----HHHHh-------hHHHHhhhccchhhhhhccc--chhhHHHHHHHHHHHHhhhHHHHH
Confidence 445677888888877653 22222 11111111111223334332 33333 34555556779999999
Q ss_pred HHHHHHHHCCCCCCh---hhHHHHHHHHHccCCchHHHHHHHHHHhCCC
Q 022131 135 ELLGEMVRNGVCPSA---ETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180 (302)
Q Consensus 135 ~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 180 (302)
+.++++.+.- |-. .....++.++....-+.++..++.+..+...
T Consensus 296 K~~RDL~ke~--pl~t~lniheNLiEalLE~QAYADvqavLakYDdisl 342 (556)
T KOG3807|consen 296 KIMRDLMKEF--PLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISL 342 (556)
T ss_pred HHHHHHhhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 9998877641 221 2234567777776666666666666655543
No 421
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=56.77 E-value=1.3e+02 Score=26.08 Aligned_cols=246 Identities=9% Similarity=0.056 Sum_probs=139.4
Q ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCc
Q 022131 18 AERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG-IEP-DVTSFSIVLHVYSRAHQP 95 (302)
Q Consensus 18 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~ 95 (302)
..++|++..+- -|+...|+..|..|...-.... ...+.....+|+.....+ ..+ ....|..+...+...+..
T Consensus 301 ~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r----~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~ 374 (568)
T KOG2396|consen 301 CCAVYEEAVKT--LPTESMWECYITFCLERFTFLR----GKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEA 374 (568)
T ss_pred HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchH
Confidence 34566666553 4566677777776655221110 224455555666555432 222 345566666666555443
Q ss_pred hhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccC-CHHH-HHHHHHHHHHCCCCCChhhHHHHHHHHHccCC-c--hHHHH
Q 022131 96 QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG-RIED-AEELLGEMVRNGVCPSAETYNCFFKEYRGRKD-A--NGAMK 170 (302)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~--~~a~~ 170 (302)
.+ +-..+...++..|...|..-+....+.. +.+- -..++..+...-..+....|+... .++ . ..-..
T Consensus 375 r~---~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~ 446 (568)
T KOG2396|consen 375 RE---VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDL 446 (568)
T ss_pred hH---HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHH
Confidence 22 2223332334446666666665555332 2222 223334444332223344444433 222 1 12223
Q ss_pred HHHHHHhCCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 022131 171 LYRQMKEDGLCVPNMHSY-NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE--KQKWKEACQYFVEMI 247 (302)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~ 247 (302)
++..+...+ .|+..++ +.++.-+.+.|-..+|..++..+... .+|+...|..+|..=.. .-+..-+..+++.|.
T Consensus 447 Ii~a~~s~~--~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 447 IISALLSVI--GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred HHHHHHHhc--CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 344444444 4555554 56778888899999999999999887 67788888888865322 223777888999886
Q ss_pred HC-CCCCchhhHHHHHHHHhhcchHHHHHHHHHhcc
Q 022131 248 EK-GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282 (302)
Q Consensus 248 ~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (302)
.. | .|+..|.-.+.--...|..+.+-.++.+..
T Consensus 524 ~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 524 REFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHhC--CChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 54 6 677778777776678888888877766543
No 422
>PRK12798 chemotaxis protein; Reviewed
Probab=56.76 E-value=1.2e+02 Score=25.59 Aligned_cols=193 Identities=12% Similarity=0.033 Sum_probs=109.4
Q ss_pred cCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHccCCch
Q 022131 92 AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC-SCGRIEDAEELLGEMVRNGVCPSA----ETYNCFFKEYRGRKDAN 166 (302)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 166 (302)
.|+..++.+.+..+.....++....+-.|+.+-. ...+..+|+.+|+...-. .|.+ .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6777888888888876666667777777776644 345788888888877643 2332 22333344556778877
Q ss_pred HHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 022131 167 GAMKLYRQMKEDGLCVPNMHS-YNILIGMFMALNRMDMVREIWNDVKGSGLGP--DLDSYTMLIHGLCEKQKWKEACQYF 243 (302)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~ 243 (302)
+...+-.+....-...|-..- +..+..+..+.++-..-.. +..+... +.| -...|-.+.+.-.-.|+.+.|...-
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR-LVEILSF-MDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH-HHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 766655554443211222222 2333334444433222222 3333322 222 3467888888888889998888888
Q ss_pred HHHHHCCCCCch-hhHHHHHHHHh--hcchHHHHHHHHHhccccCCCc
Q 022131 244 VEMIEKGLLPQK-VTFETLYRGLI--QSDMLRTWRRLKKKLDEESITF 288 (302)
Q Consensus 244 ~~~~~~~~~p~~-~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~ 288 (302)
.+.....-..+. ..-..|..+.. -..+.+++.+.+..+.....+.
T Consensus 281 ~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~ 328 (421)
T PRK12798 281 ERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSE 328 (421)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCCh
Confidence 877654211111 12222333332 4556788888887777666554
No 423
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.75 E-value=1.6e+02 Score=27.11 Aligned_cols=134 Identities=10% Similarity=-0.007 Sum_probs=69.2
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCcc---cHHHHHHHHHHHHhcccCCcchhh--------HHHHHHHHHHHHHHHhc-
Q 022131 6 IYGWCKINRIDMAERFLGEMIERGVEP---NVVTYNVLLNGVCRRASLHPSERF--------EKTIRNAEKVFDEMRVR- 73 (302)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~~~~~--------~~~~~~a~~~~~~~~~~- 73 (302)
|.-+.+.+.+++|+++.+..... .| -...+...+..+.-.++...+-.. ...|+.....|.+..+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 34566778888888877655433 33 234566666666663333222111 22233333333333221
Q ss_pred --------C-CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhc---------CC-------CcCHHHHHHHHHHHhccC
Q 022131 74 --------G-IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK---------GI-------CPTVATYSSVVKCLCSCG 128 (302)
Q Consensus 74 --------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~-------~~~~~~~~~ll~~~~~~~ 128 (302)
| ...+...|..++..+.. .+...-.++....... .. ..+...-..|+..|...+
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~ 519 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDN 519 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHcc
Confidence 1 11245678888877776 3332222222211000 00 112233445778888889
Q ss_pred CHHHHHHHHHHHHH
Q 022131 129 RIEDAEELLGEMVR 142 (302)
Q Consensus 129 ~~~~a~~~~~~~~~ 142 (302)
++..|+.++-.+.+
T Consensus 520 ~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 520 KYEKALPIYLKLQD 533 (846)
T ss_pred ChHHHHHHHHhccC
Confidence 99999988877754
No 424
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=56.73 E-value=79 Score=23.44 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=29.9
Q ss_pred HHHHHhcCCcchHHHHHHHHHhC--CCcccHHHHHHHHH-HHHhcccCCcchhhHHHHHHHHHHHHHHHhc
Q 022131 6 IYGWCKINRIDMAERFLGEMIER--GVEPNVVTYNVLLN-GVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73 (302)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 73 (302)
.-.....|++++|.+-++.+.+. .++--...|..+.. +++..+ ...+.+|..++.-....
T Consensus 36 aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a--------~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 36 AIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTA--------LQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcch--------HHHHHHHHHHHHHHhcC
Confidence 33445667777777666665443 11212233444444 333322 45566666666555543
No 425
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=55.85 E-value=1.2e+02 Score=25.22 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=16.6
Q ss_pred ChhhHHHHHHHHHccCCchHHHHHHHHH
Q 022131 148 SAETYNCFFKEYRGRKDANGAMKLYRQM 175 (302)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (302)
...+...+-..+...|+.+.|.+++++.
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555555556666666666666655554
No 426
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=55.54 E-value=1.5e+02 Score=26.40 Aligned_cols=199 Identities=10% Similarity=0.075 Sum_probs=102.3
Q ss_pred ccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCC
Q 022131 32 PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC 111 (302)
Q Consensus 32 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 111 (302)
+....+..++..+.. -..+.-.++++++.. . + ...+..++.+....|-.....-+.+.+....+.
T Consensus 308 ~~~~~f~~lv~~lR~-----------~~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~ 372 (574)
T smart00638 308 PAAAKFLRLVRLLRT-----------LSEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT 372 (574)
T ss_pred chHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 345566777665544 234556666666654 1 1 678888999999998866666666666554443
Q ss_pred cCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHC-CCCCCh-------hhHHHHHHHHHccCCc------hHHHHHHHHHH
Q 022131 112 PTVATYSSVVKCLCSC-GRIEDAEELLGEMVRN-GVCPSA-------ETYNCFFKEYRGRKDA------NGAMKLYRQMK 176 (302)
Q Consensus 112 ~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~~~~------~~a~~~~~~~~ 176 (302)
+...-..+..+..-. .--.+.++.+..+.+. ...+.. .++..++.-+|..... ++....+.+..
T Consensus 373 -~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l 451 (574)
T smart00638 373 -PLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELL 451 (574)
T ss_pred -HHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHH
Confidence 333333344333332 2234444444444443 344443 3455555544544432 33333333332
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 022131 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK--QKWKEACQYFVEMI 247 (302)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~ 247 (302)
......-|..--...+.+.+..|.......+-..+ ......+...-...+.++.+. ...+.+..++-..-
T Consensus 452 ~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l-~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~ 523 (574)
T smart00638 452 QQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYL-EGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIY 523 (574)
T ss_pred HHHHhcCCchheeeHHHhhhccCChhHHHHHHHhc-CCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 22111223333456677888888765544433333 322233444444555555433 45666666655554
No 427
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=55.12 E-value=1e+02 Score=24.33 Aligned_cols=154 Identities=12% Similarity=0.066 Sum_probs=95.2
Q ss_pred hcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 022131 11 KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90 (302)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (302)
..+++..+...+......+.. .....+...+...... ..+..+|..+|+.+.+.|. ......|...|.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv------~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~ 120 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGV------SRDKTKAADWYRCAAADGL---AEALFNLGLMYA 120 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCc------cccHHHHHHHHHHHhhccc---HHHHHhHHHHHh
Confidence 345667777777777664322 3334444444442222 5567889999998877763 334444555555
Q ss_pred h----cCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccC-------CHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 022131 91 R----AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG-------RIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159 (302)
Q Consensus 91 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (302)
. ..+..+|...++...+.|..+...+...+...|..-. +...|...+.+....+ +......+...|
T Consensus 121 ~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y 197 (292)
T COG0790 121 NGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMY 197 (292)
T ss_pred cCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHH
Confidence 4 4488999999999999986543233444444444431 3347888888888876 344444444444
Q ss_pred Hc----cCCchHHHHHHHHHHhCC
Q 022131 160 RG----RKDANGAMKLYRQMKEDG 179 (302)
Q Consensus 160 ~~----~~~~~~a~~~~~~~~~~~ 179 (302)
.. ..+..+|...|...-+.|
T Consensus 198 ~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 198 EKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HcCCCCCcCHHHHHHHHHHHHHCC
Confidence 32 336678888888888876
No 428
>PRK09857 putative transposase; Provisional
Probab=54.71 E-value=1.1e+02 Score=24.50 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCc
Q 022131 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ 254 (302)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 254 (302)
..+..++....+.++.++..++++.+.+. .+......-.+..-+.+.|.-+++.++..+|...|+.++
T Consensus 207 ~~~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 207 RQIKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 33556666666777777777777777665 333444455666777777777788888999988887655
No 429
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.05 E-value=90 Score=23.26 Aligned_cols=89 Identities=12% Similarity=0.040 Sum_probs=49.2
Q ss_pred HHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022131 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN-----ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230 (302)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 230 (302)
...+...+++++|..-++..... |....+. .|.+.....|.+|+|...++.....+. .......--+.+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDil 169 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence 34456667777777777666543 2222222 233445566777777777666554322 122223334556
Q ss_pred HHcCCHHHHHHHHHHHHHCC
Q 022131 231 CEKQKWKEACQYFVEMIEKG 250 (302)
Q Consensus 231 ~~~g~~~~a~~~~~~~~~~~ 250 (302)
...|+-++|..-|.+..+.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 66777777777777766653
No 430
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=53.88 E-value=1.1e+02 Score=25.79 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 022131 57 EKTIRNAEKVFDEMR 71 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~ 71 (302)
.+++.+|.+.|-...
T Consensus 285 mrryadai~~F~niL 299 (525)
T KOG3677|consen 285 MRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555554443
No 431
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.77 E-value=1.1e+02 Score=24.35 Aligned_cols=119 Identities=10% Similarity=0.068 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHHhcCCchhHHHHHHHHH----hcCCCcCHHHHHHHHHHHh
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVT-------SFSIVLHVYSRAHQPQLSLDKLNFMK----EKGICPTVATYSSVVKCLC 125 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ll~~~~ 125 (302)
.+++++|+..+.+....|+..|.. +...+...|...|+....-+...... +-.-+.......+++..+-
T Consensus 16 ~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~ 95 (421)
T COG5159 16 SNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFP 95 (421)
T ss_pred hhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcC
Confidence 789999999999999998766543 45667888999998876655544332 2222234455677777765
Q ss_pred cc-CCHHHHHHHHHHHHHCCCCC-----ChhhHHHHHHHHHccCCchHHHHHHHHH
Q 022131 126 SC-GRIEDAEELLGEMVRNGVCP-----SAETYNCFFKEYRGRKDANGAMKLYRQM 175 (302)
Q Consensus 126 ~~-~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (302)
.. ..++.-+.+.....+...+- ....-.-++..+.+.|.+.+|+.....+
T Consensus 96 ~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 96 YSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 54 45666777766665532211 1222345677888999999988765544
No 432
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=53.27 E-value=60 Score=21.38 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=18.1
Q ss_pred HHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccC
Q 022131 89 YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128 (302)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 128 (302)
+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 10 l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 10 LLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3333444445555555555444444444444444444433
No 433
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=52.89 E-value=44 Score=19.34 Aligned_cols=18 Identities=11% Similarity=0.016 Sum_probs=9.0
Q ss_pred HccCCchHHHHHHHHHHh
Q 022131 160 RGRKDANGAMKLYRQMKE 177 (302)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~ 177 (302)
...|++-+|.++++.+-.
T Consensus 10 ~n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HHTT-HHHHHHHHHHHCC
T ss_pred HcCCCHHHhHHHHHHHHH
Confidence 345555555555555543
No 434
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=52.44 E-value=1.2e+02 Score=24.40 Aligned_cols=194 Identities=11% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhH
Q 022131 19 ERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLS 98 (302)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 98 (302)
+.++.-+.-.+-.|+...++.|+.--.-.. .-...-+.++|+... .....+.++..+.+.+.-+.-
T Consensus 150 LA~~Tal~l~nGt~~~tvl~~L~~d~LVke--------Gi~l~F~~~lFk~~~------~Ek~i~~lis~Lrkg~md~rL 215 (412)
T KOG2297|consen 150 LAMLTALLLSNGTLPATVLQSLLNDNLVKE--------GIALSFAVKLFKEWL------VEKDINDLISSLRKGKMDDRL 215 (412)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhhHHHH--------hHHHHHHHHHHHHHH------hhccHHHHHHHHHhcChHhHH
Q ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhC
Q 022131 99 LDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178 (302)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (302)
+++| +|+..+-......+...|--+-..-.-.++... .-...-..+..-..+...+++......+-.+.
T Consensus 216 meff--------Ppnkrs~E~Fak~Ft~agL~elvey~~~q~~~~---a~kElq~~L~~q~s~e~p~~evi~~VKee~k~ 284 (412)
T KOG2297|consen 216 MEFF--------PPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEG---ARKELQKELQEQVSEEDPVKEVILYVKEEMKR 284 (412)
T ss_pred HHhc--------CCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 022131 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242 (302)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 242 (302)
.. -|++.+...+-++......|.+-.++..+-.-+ ...+|..|+.+++..|+.+..+-+
T Consensus 285 ~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalr----hlK~yaPLL~af~s~g~sEL~Ll~ 343 (412)
T KOG2297|consen 285 NN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALR----HLKQYAPLLAAFCSQGQSELELLL 343 (412)
T ss_pred cC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH----HHHhhhHHHHHHhcCChHHHHHHH
No 435
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=52.40 E-value=56 Score=21.77 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccC
Q 022131 84 IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128 (302)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 128 (302)
.++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 445555555556666667777666665555555444444444433
No 436
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.06 E-value=1.4e+02 Score=24.98 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=30.1
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHH--ccCCchHHHHHHHHHHhC
Q 022131 124 LCSCGRIEDAEELLGEMVRNGVCPSAE--TYNCFFKEYR--GRKDANGAMKLYRQMKED 178 (302)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 178 (302)
+.+.+++..|.++++.+.+. ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34567777777777777765 433333 2333333332 344556676666666544
No 437
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.81 E-value=74 Score=21.61 Aligned_cols=44 Identities=9% Similarity=0.154 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022131 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210 (302)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (302)
.+.++|..|...++..-....|..-...+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55555555555554444445555555555555555555555543
No 438
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=51.22 E-value=2e+02 Score=26.47 Aligned_cols=92 Identities=10% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------------CCCchhhHHHHHHHHhhc
Q 022131 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG-------------LLPQKVTFETLYRGLIQS 268 (302)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------------~~p~~~~~~~l~~~~~~~ 268 (302)
+-...+-..+.+.|+..+......++... .|+...++.+++++...| -.++...+..++.++..
T Consensus 182 eI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~- 258 (709)
T PRK08691 182 QVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN- 258 (709)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-
Q ss_pred chHHHHHHHHHhccccCCCcccchhhhc
Q 022131 269 DMLRTWRRLKKKLDEESITFGSEFQNYH 296 (302)
Q Consensus 269 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 296 (302)
++...+..+++++.+.|+.+...+...+
T Consensus 259 ~d~~~al~~l~~L~~~G~d~~~~l~~L~ 286 (709)
T PRK08691 259 QDGAALLAKAQEMAACAVGFDNALGELA 286 (709)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHH
No 439
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.02 E-value=1.2e+02 Score=23.63 Aligned_cols=115 Identities=10% Similarity=0.005 Sum_probs=64.5
Q ss_pred cCCcchHHHHHHHHHhCCCcccH-HHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHH
Q 022131 12 INRIDMAERFLGEMIERGVEPNV-VTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT-SFSIVLHVY 89 (302)
Q Consensus 12 ~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~ 89 (302)
..+++.|+.-|.+.... .|+. .-|+.-+.++.+ .++++.+..--.+..+. .||.. ..-.+..+.
T Consensus 23 ~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk----------~~~~~~v~~dcrralql--~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLK----------LKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWL 88 (284)
T ss_pred hhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHH----------hhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHH
Confidence 34567777766555544 5555 344555666666 55555555544444443 34433 333455566
Q ss_pred HhcCCchhHHHHHHHHHh----cCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 022131 90 SRAHQPQLSLDKLNFMKE----KGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140 (302)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 140 (302)
.....++.|+..+.+... ..+++-......|..+--+.-...+..++.++.
T Consensus 89 l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 667777778777776633 234444555666666555555555565655544
No 440
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.37 E-value=15 Score=29.68 Aligned_cols=89 Identities=15% Similarity=0.004 Sum_probs=45.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 022131 127 CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206 (302)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (302)
.|.++.|++.|...++... +....|..-.+++.+.+.+..+++=+....+.+ +.+...|-.--.+....|+|++|..
T Consensus 127 ~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHHH
Confidence 4556666666665555432 344444444555555666666665555555543 2223333333334444566666666
Q ss_pred HHHHHHhCCCCC
Q 022131 207 IWNDVKGSGLGP 218 (302)
Q Consensus 207 ~~~~~~~~~~~~ 218 (302)
.+....+.++.+
T Consensus 204 dl~~a~kld~dE 215 (377)
T KOG1308|consen 204 DLALACKLDYDE 215 (377)
T ss_pred HHHHHHhccccH
Confidence 666666554443
No 441
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=49.20 E-value=1.5e+02 Score=26.52 Aligned_cols=86 Identities=13% Similarity=-0.035 Sum_probs=53.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 022131 127 CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206 (302)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (302)
.|+...|...+.........-.-+....+.....+.|....|..++.+..... ...+-++..+..++....+.+.|++
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--ccCchHHHhcchhHHHHhhhHHHHH
Confidence 46777777766665543222233344455555566666666777776666554 3344566677777777788888888
Q ss_pred HHHHHHhC
Q 022131 207 IWNDVKGS 214 (302)
Q Consensus 207 ~~~~~~~~ 214 (302)
.|+...+.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 88777665
No 442
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=49.18 E-value=1.3e+02 Score=23.54 Aligned_cols=106 Identities=8% Similarity=0.135 Sum_probs=44.2
Q ss_pred CChhhHHHHHHHHHccCCchHHHHHHHHHHhCCC---CCCCHHHHHHHHHHHHhcCC--HHHHHHHHHH----HHhCCCC
Q 022131 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL---CVPNMHSYNILIGMFMALNR--MDMVREIWND----VKGSGLG 217 (302)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~----~~~~~~~ 217 (302)
|-...-..++.........++...++..+..... ..++......++++++..|. +.-+..++++ ++..+ .
T Consensus 9 P~~~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~~q~ll~~GSkS~SH~~~~lery~~~Lk~l~-~ 87 (253)
T PF09090_consen 9 PFHALAQKLLDLIRKKAPPEEISELLEEIEEPAEEHGSDFDKFVIDVFVQCLLHIGSKSFSHVLSALERYKEVLKELE-A 87 (253)
T ss_dssp TTHHHHHHHHHHHHTT--HHHHHHHHTTS------------HHHHHHHHHHHHHHTTTSHHHHHHHHHHTHHHHHHH--T
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-c
Confidence 4445555555555555555555555555543321 02334555666666665554 2222222222 22211 2
Q ss_pred CCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCC
Q 022131 218 PDLDSYTMLIHGLCE--KQKWKEACQYFVEMIEKGLLP 253 (302)
Q Consensus 218 ~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~p 253 (302)
++...=..++.+..+ ..++..+.-+.++|++.++..
T Consensus 88 ~~~~~q~~il~~v~~~W~~~~q~~~li~dkll~~~ii~ 125 (253)
T PF09090_consen 88 ESEEAQFWILDAVFRFWKNNPQMGFLIIDKLLNYGIIS 125 (253)
T ss_dssp SSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-
T ss_pred CChHHHHHHHHHHHHHHhcCCceehHHHHHHHhcCCCC
Confidence 333333334433322 345556666666666655543
No 443
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=49.08 E-value=1.1e+02 Score=22.85 Aligned_cols=31 Identities=10% Similarity=-0.002 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHHHHHhCC
Q 022131 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179 (302)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (302)
....+.++..|...|+++.|.++|.-+....
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~ 71 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP 71 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 3455667777777777777777777777664
No 444
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=48.90 E-value=1.2e+02 Score=23.04 Aligned_cols=22 Identities=5% Similarity=-0.117 Sum_probs=10.7
Q ss_pred HHHHhcCCchhHHHHHHHHHhc
Q 022131 87 HVYSRAHQPQLSLDKLNFMKEK 108 (302)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~ 108 (302)
....+.|+.++|.+.|..+...
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcC
Confidence 3344455555555555555444
No 445
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=48.66 E-value=3.7e+02 Score=28.80 Aligned_cols=64 Identities=9% Similarity=-0.058 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccCC
Q 022131 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286 (302)
Q Consensus 220 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 286 (302)
..+|-...+....+|+++.|...+-...+.+ .| ..+--...-+...|+...|..++++..+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 4678888888888999999999888877654 23 3445566778899999999999988775443
No 446
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.14 E-value=78 Score=20.83 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=19.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 022131 116 TYSSVVKCLCSCGRIEDAEELLGEMVR 142 (302)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 142 (302)
-|..++..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366777777777777777777777665
No 447
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.11 E-value=2.1e+02 Score=25.90 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=47.0
Q ss_pred hHHHHHHHHH-HhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-------------CCHHHHHHHHHHHH
Q 022131 166 NGAMKLYRQM-KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG-------------PDLDSYTMLIHGLC 231 (302)
Q Consensus 166 ~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~~~~~li~~~~ 231 (302)
++..+.+... .+.|. ..+......++. ...|++..+..++++....|.. ++......++.++
T Consensus 186 eei~~~L~~i~~~egi-~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL- 261 (618)
T PRK14951 186 ETVLEHLTQVLAAENV-PAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDAL- 261 (618)
T ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHH-
Confidence 3444444443 33444 556565655555 3457888888877765543211 1222333344443
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCc
Q 022131 232 EKQKWKEACQYFVEMIEKGLLPQ 254 (302)
Q Consensus 232 ~~g~~~~a~~~~~~~~~~~~~p~ 254 (302)
..|+...++.+++++.+.|..|.
T Consensus 262 ~~~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 262 AQGDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHH
Confidence 34777888888888877766543
No 448
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=48.09 E-value=85 Score=26.89 Aligned_cols=105 Identities=10% Similarity=-0.040 Sum_probs=58.8
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCCCcCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 022131 86 LHVYSRAHQPQLSLDKLNFMKEKGICPTVA-TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164 (302)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (302)
+..+...++++.|..++.+..+.. |+-. .|..-..++.+.+++..|+.=+...++... -....|..=..++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP-~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDP-TYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCc-hhhheeeeccHHHHhHHH
Confidence 344556667777777777777763 4333 344444677777777777766666665431 112223222334444455
Q ss_pred chHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 022131 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM 196 (302)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (302)
+.+|...|+..... .|+..-....+.-|-
T Consensus 88 ~~~A~~~l~~~~~l---~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL---APNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHhhhc---CcCcHHHHHHHHHHH
Confidence 56666666665554 566655555555443
No 449
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.62 E-value=2.9e+02 Score=27.20 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=81.1
Q ss_pred HHHhcCCchhHHHHHHHHHhc-----------------------CCCcC-----HHHHHHHHHHHhccCCHHHHHHHHHH
Q 022131 88 VYSRAHQPQLSLDKLNFMKEK-----------------------GICPT-----VATYSSVVKCLCSCGRIEDAEELLGE 139 (302)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~-----------------------~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~ 139 (302)
+|...|...+|+..|.+.... |-.|+ ..-|..+++.+-+.+-.+.+.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 466677788888877766432 21111 22255666666677777777666665
Q ss_pred HHHCCC---CCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH------------HH
Q 022131 140 MVRNGV---CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMD------------MV 204 (302)
Q Consensus 140 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------~a 204 (302)
.++.-. +--..+++.+.+.....|.+-+|...+-+-... ..-......++.....+|.++ +.
T Consensus 1009 AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds---errrdcLRqlvivLfecg~l~~L~~fpfigl~~ev 1085 (1480)
T KOG4521|consen 1009 AIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS---ERRRDCLRQLVIVLFECGELEALATFPFIGLEQEV 1085 (1480)
T ss_pred HHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH---HHHHHHHHHHHHHHHhccchHHHhhCCccchHHHH
Confidence 555411 111345667777777777777766544322111 111223445555555666543 33
Q ss_pred HH-HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 022131 205 RE-IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245 (302)
Q Consensus 205 ~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 245 (302)
.. +++..-....--....|+.|-.-+...+++.+|-.++-+
T Consensus 1086 e~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1086 EDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred HHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
Confidence 33 222222221111223455555555777888777665433
No 450
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.52 E-value=2.4e+02 Score=26.20 Aligned_cols=144 Identities=13% Similarity=0.081 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEP---DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 133 (302)
.+.+++|+.+-+.... ..| ........|..+.-.|+++.|-...-.|... +..-|..-+..+...++....
T Consensus 369 ~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 369 KKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred hhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchh
Confidence 5667777766655433 233 3456777788888888888888887777654 455566666666665554433
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHH------------------HHHHhCCCCCCCHHHHHHHHHHH
Q 022131 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLY------------------RQMKEDGLCVPNMHSYNILIGMF 195 (302)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------------------~~~~~~~~~~~~~~~~~~l~~~~ 195 (302)
..++ .......++..|..++-.+.. .+...-.+.. .+..+. .-+...-..|+..|
T Consensus 443 a~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~---Se~~~L~e~La~LY 515 (846)
T KOG2066|consen 443 APYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN---SESTALLEVLAHLY 515 (846)
T ss_pred hccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh---ccchhHHHHHHHHH
Confidence 2221 111112344455555555544 2111111111 111111 11222334477777
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 022131 196 MALNRMDMVREIWNDVKG 213 (302)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~ 213 (302)
...+++..|..++-...+
T Consensus 516 l~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHccChHHHHHHHHhccC
Confidence 788888888877766653
No 451
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=47.48 E-value=1.7e+02 Score=24.76 Aligned_cols=131 Identities=10% Similarity=-0.008 Sum_probs=70.3
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHhCC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 022131 152 YNCFFKEYRGRKDANGAMKLYRQMKEDG------LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225 (302)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (302)
...+++.++-.|++..|+++++.+.-.. +..-...++--+.-+|.-.+++.+|.+.|....-. +.-..
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y-i~r~k----- 198 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY-IQRTK----- 198 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh-----
Confidence 4566777888888888888887764321 11223445566667777888888888888876542 00000
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----CCCC---chhhHHHHHHHHh------hcchHHHHHHHHHhccccCCCcc
Q 022131 226 LIHGLCEKQKWKEACQYFVEMIEK-----GLLP---QKVTFETLYRGLI------QSDMLRTWRRLKKKLDEESITFG 289 (302)
Q Consensus 226 li~~~~~~g~~~~a~~~~~~~~~~-----~~~p---~~~~~~~l~~~~~------~~g~~~~a~~~~~~~~~~~~~~~ 289 (302)
-....+..+.+...+..++|... -+.| |..+-..+=.-|. +.|+.+...++|..--.+-++|.
T Consensus 199 -~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~acPKFIsp~ 275 (404)
T PF10255_consen 199 -NQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFACPKFISPV 275 (404)
T ss_pred -hhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhhCCCccCCC
Confidence 00112333444444444444321 1223 3333333333322 35666777777776665555544
No 452
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=47.36 E-value=2.1e+02 Score=25.56 Aligned_cols=196 Identities=7% Similarity=-0.002 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 022131 77 PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156 (302)
Q Consensus 77 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 156 (302)
+....|..|++.+... +.+...++++++.. . + ...+..++++....|-.+....+.+.+....+ ++...-..+.
T Consensus 308 ~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~-~~~ea~~~~~ 381 (574)
T smart00638 308 PAAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI-TPLEAAQLLA 381 (574)
T ss_pred chHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 4566788888776544 56778888888765 2 1 66889999999999988777777777766555 3333344444
Q ss_pred HHHHcc-CCchHHHHHHHHHHhCCCCCCCHH-------HHHHHHHHHHhcCCH------HHHHHHHHHHHhCCC-CCCHH
Q 022131 157 KEYRGR-KDANGAMKLYRQMKEDGLCVPNMH-------SYNILIGMFMALNRM------DMVREIWNDVKGSGL-GPDLD 221 (302)
Q Consensus 157 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~-~~~~~ 221 (302)
.+.... .-..+.++.+..+.+....+++.. ++..++.-++..... ++....+........ .-+..
T Consensus 382 ~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 461 (574)
T smart00638 382 VLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEE 461 (574)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCch
Confidence 433332 233455555556655433245543 345555544433321 233333333222111 12333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhc--chHHHHHHHHH
Q 022131 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS--DMLRTWRRLKK 279 (302)
Q Consensus 222 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~ 279 (302)
--...+.++++.|...... .+..........+...-...+.++.+. ...+++..++-
T Consensus 462 ~~~~~LkaLGN~g~~~~i~-~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~ 520 (574)
T smart00638 462 EIQLYLKALGNAGHPSSIK-VLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLL 520 (574)
T ss_pred heeeHHHhhhccCChhHHH-HHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 3455778888888755543 333333322223334444455565543 24455555443
No 453
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.03 E-value=1.2e+02 Score=22.65 Aligned_cols=132 Identities=14% Similarity=0.111 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHH--HHHHHHHhccCCHHHHHHHHHHHHHCCCC--CChhhHHH
Q 022131 79 VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATY--SSVVKCLCSCGRIEDAEELLGEMVRNGVC--PSAETYNC 154 (302)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 154 (302)
...|..++.... .+.+ +.....+.+........-.++ ..+...+...+++++|+.-++........ ....+--.
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 344555555543 3333 555566666665322112222 23345577889999999999987754110 11223334
Q ss_pred HHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 022131 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215 (302)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (302)
|.+.....|.+++|+.+++.....+. .......-.+.+...|+-++|+.-|++....+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w---~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESW---AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccH---HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 55677889999999999988776532 33334455678889999999999999988874
No 454
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=46.92 E-value=1.5e+02 Score=23.76 Aligned_cols=119 Identities=14% Similarity=0.184 Sum_probs=63.3
Q ss_pred CChhhHHHHHHHHHccCCchHHHHHHHHHHhC----CCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhCCCCCC
Q 022131 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKED----GLCVPNMHSYNILIG---MFMALNRMDMVREIWNDVKGSGLGPD 219 (302)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (302)
-...++..+...|++.++.+.+.+..++..+. |. +.|+. -+.++ .|....-.++-++..+.+.++|...+
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~-KiDv~--l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGL-KIDVF--LCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccc-chhhH--HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 34566777777888888888777776665543 32 33322 22222 22223335566666667777765433
Q ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcch
Q 022131 220 L----DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM 270 (302)
Q Consensus 220 ~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 270 (302)
. .+|.-+-. ....++.+|-.++.+....=-......|...++...-.|-
T Consensus 190 RrNRyK~Y~Gi~~--m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~Gl 242 (412)
T COG5187 190 RRNRYKVYKGIFK--MMRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCGL 242 (412)
T ss_pred hhhhHHHHHHHHH--HHHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhhh
Confidence 2 23333222 2345677777777666543112233456666665555553
No 455
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.73 E-value=90 Score=21.18 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHhcCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 022131 96 QLSLDKLNFMKEKGICP-TVATYSSVVKCLCSCGRIEDAEELLGE 139 (302)
Q Consensus 96 ~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 139 (302)
+.+.++|..|...|+-. ....|......+...|++++|.++|+.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 37778888887765432 455677777777788888888887765
No 456
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=46.65 E-value=2.1e+02 Score=25.29 Aligned_cols=60 Identities=17% Similarity=0.122 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhcCC-CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 022131 83 SIVLHVYSRAHQPQLSLDKLNFMKEKGI-CPTVATYSSVVKCLCSCGRIEDAEELLGEMVR 142 (302)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 142 (302)
..++.-|.+.+++++|..++..|.=.-. ..--...+.+++...+..--++.+..++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 4566677788888888887777621100 11122334445555555444455555555544
No 457
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=46.50 E-value=86 Score=26.83 Aligned_cols=104 Identities=15% Similarity=0.015 Sum_probs=54.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 022131 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSA-ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199 (302)
Q Consensus 121 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (302)
.+-+.+.++++.|..++.+.++. .|+- ..|..-..++.+.+++..|+.=...+.+.. +-....|-.-..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 34445556666777777666664 3433 233333356666666666666555555553 222233333334444555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022131 200 RMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230 (302)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 230 (302)
.+.+|...|+.... +.|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 55566665555554 355555555555444
No 458
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.23 E-value=1.8e+02 Score=24.59 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhc------CCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFMKEK------GICP-TVATYSSVVKCLCSCGRIEDAEELLGEMV 141 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 141 (302)
+...|++.++-.||+..|+++++.+.-. .+++ ...++--+.-+|...+++.+|.++|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888999999999999998876321 1222 33456667778888999999999998865
No 459
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=46.17 E-value=69 Score=24.15 Aligned_cols=82 Identities=20% Similarity=0.178 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHCCC-------CCChhhHHHHHHHHHccCCc---------hHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 022131 130 IEDAEELLGEMVRNGV-------CPSAETYNCFFKEYRGRKDA---------NGAMKLYRQMKEDGLCVPNMHSYNILIG 193 (302)
Q Consensus 130 ~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~---------~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (302)
.+.|..++..|--..+ .....-|..+..+|.+.|-+ +....+++...+.|..+.=+..|+.+|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 5667777776643321 12456677788888887743 3345555555555554444455666665
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 022131 194 MFMALNRMDMVREIWNDV 211 (302)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~ 211 (302)
--.-.-+++++.+++..+
T Consensus 217 k~tG~TrpedV~~l~~~~ 234 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIV 234 (236)
T ss_pred cccCCCCHHHHHHHHHHh
Confidence 544445566666665544
No 460
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.78 E-value=18 Score=29.26 Aligned_cols=95 Identities=14% Similarity=0.101 Sum_probs=72.0
Q ss_pred HccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHH
Q 022131 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL-DSYTMLIHGLCEKQKWKE 238 (302)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~ 238 (302)
...|.++.|++.+....+.+ ++....|..-.+++.+.+++..|++=+...... .||. ..|-.=-.+....|++++
T Consensus 125 ln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred hcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 46788999999999998886 778888888888999999999999888877764 4443 233333334456799999
Q ss_pred HHHHHHHHHHCCCCCchhhH
Q 022131 239 ACQYFVEMIEKGLLPQKVTF 258 (302)
Q Consensus 239 a~~~~~~~~~~~~~p~~~~~ 258 (302)
|...+....+.++.+....+
T Consensus 201 aa~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHHHhccccHHHHHH
Confidence 99999999888776654433
No 461
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.72 E-value=1.5e+02 Score=23.31 Aligned_cols=127 Identities=13% Similarity=0.097 Sum_probs=56.1
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCch-hHHHHHHHHH---hcC--CCcCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 022131 67 FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ-LSLDKLNFMK---EKG--ICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140 (302)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~---~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 140 (302)
.+-..+.+.++|......++..+...+.-+ .-.++.+.+. +.+ ..-++.....+...|.+.|++.+|+..|-.-
T Consensus 37 iev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 37 IEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 333333445555555555555554433221 1222222221 222 2236677888888899999888887655332
Q ss_pred HHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022131 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
.+ |+...+..++..+...|...+. +... ...+--|...++...|..++....+
T Consensus 117 ~~----~~~~~~~~ll~~~~~~~~~~e~---------------dlfi-~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 117 TD----PSAFAYVMLLEEWSTKGYPSEA---------------DLFI-ARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp -H----HHHHHHHHHHHHHHHHTSS--H---------------HHHH-HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CC----hhHHHHHHHHHHHHHhcCCcch---------------hHHH-HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 11 2232222233322222322222 2121 2223345566778888877766554
No 462
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.31 E-value=87 Score=20.60 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=18.7
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHh
Q 022131 151 TYNCFFKEYRGRKDANGAMKLYRQMKE 177 (302)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (302)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366677777777777777777776665
No 463
>PRK10941 hypothetical protein; Provisional
Probab=45.27 E-value=1.5e+02 Score=23.40 Aligned_cols=78 Identities=9% Similarity=-0.078 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCchhhHHHHHHHHh
Q 022131 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-GLLPQKVTFETLYRGLI 266 (302)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 266 (302)
.+.+-.+|.+.++++.|.++.+.+... .+.++.-+.--.-.|.+.|.+..|..=++..+++ .-.|+.......+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l-~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQF-DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 456667788888899999888888875 2234444444455577888888888888877654 33455555555555443
No 464
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=45.23 E-value=2.6e+02 Score=25.97 Aligned_cols=185 Identities=13% Similarity=0.118 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHh-----------ccCCHHHHHHHHHHHHHC-CC
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLC-----------SCGRIEDAEELLGEMVRN-GV 145 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-----------~~~~~~~a~~~~~~~~~~-~~ 145 (302)
.......++.++...|+++.|.+++..-.... -+.......++.+.. ..|.+..|.++++-+... .-
T Consensus 431 ~~~~~~~~l~~LL~~~~f~la~~~~~~~~~~~-l~~~~~~~lvl~~~~e~fd~Asn~n~~~g~lk~A~~~L~l~~~~~~~ 509 (715)
T PF08314_consen 431 KDEIEEIFLEALLSSGRFSLAKSLYEESSSSP-LSSEKVEDLVLKAAWEFFDNASNGNRTRGGLKKARECLNLFPPTFPN 509 (715)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHTT----TT-HHHHHHHHHHHHHHHHH-SS--TTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHhcCCcCC-CCHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccCcCCc
Confidence 34566777788888888888888887643321 223344444444432 245667777777766543 00
Q ss_pred CCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCC--------CCCCHHHHHHHHHHH-Hhc----CCHHHHHHHHHHHH
Q 022131 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL--------CVPNMHSYNILIGMF-MAL----NRMDMVREIWNDVK 212 (302)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~~l~~~~-~~~----~~~~~a~~~~~~~~ 212 (302)
.+...-...++.+.....++.-.. +.|. ..+|. ..+|.-+ ..+ .+.++-.++...+.
T Consensus 510 ~~~~~~~~~Li~a~~~Ls~f~l~l-------~~g~p~~P~~ir~~~dp---l~LI~~vLe~np~aY~~~~~ll~l~~~L~ 579 (715)
T PF08314_consen 510 SPRIQREKDLIKATHALSEFSLVL-------QPGVPFLPVQIRLHSDP---LSLISKVLEQNPKAYKQLEKLLDLANNLV 579 (715)
T ss_dssp THHHHHHHHHHHHHHHHTTS------------------HHHHHTTT-T---HHHHHHHHHHSTTGGG-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCeec-------CCCCCCCCceeeccCCh---HHHHHHHHHhCchhhcCHHHHHHHHHHHH
Confidence 123334445555554444333211 1111 01221 1222222 222 22445555555544
Q ss_pred hCC-----CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCchh-hHHHHHHHHhhcchHHH
Q 022131 213 GSG-----LG----PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-GLLPQKV-TFETLYRGLIQSDMLRT 273 (302)
Q Consensus 213 ~~~-----~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~ 273 (302)
..| -. -...+....|++....+|++-|.+...++.+. ...++.. .+...-.+|.+.|++..
T Consensus 580 ~~~~~~~~~~~~~~~~~ri~~~~i~~AL~~~Df~~Ay~~~~~ll~~~~~~~~~~~~~~~~W~~~~q~Gk~~~ 651 (715)
T PF08314_consen 580 LAGSDESSESDDEAAERRILSMCIEAALVEDDFETAYSYCLELLDPPSDASSSSPNDDESWRTCYQVGKYRS 651 (715)
T ss_dssp HH-----TT---SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---
T ss_pred HHhcccccccchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcccccccCCCChHHHHHHHHhCCCC
Confidence 431 01 11234455577777889999999988887653 1111111 34445555666665544
No 465
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.15 E-value=1.9e+02 Score=24.51 Aligned_cols=64 Identities=13% Similarity=-0.020 Sum_probs=36.4
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHCCCC
Q 022131 189 NILIGMFMA---LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK-----WKEACQYFVEMIEKGLL 252 (302)
Q Consensus 189 ~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~~ 252 (302)
..+++++.+ .++.+.|...+..|.+.|..|....-..++.++-..|. ...|...++-...-|++
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 334444443 47888888888888888877765555555555444432 22333444444444543
No 466
>PRK09462 fur ferric uptake regulator; Provisional
Probab=42.91 E-value=1.1e+02 Score=21.30 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=41.4
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhc-CCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCH
Q 022131 69 EMRVRGIEPDVTSFSIVLHVYSRA-HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130 (302)
Q Consensus 69 ~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 130 (302)
.+.+.|+.++..- ..++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455677655543 3455555544 46789999999999988777777766667777766644
No 467
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.69 E-value=3.1e+02 Score=26.14 Aligned_cols=119 Identities=11% Similarity=0.136 Sum_probs=66.8
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCC---CcccHHHHHHHHHHHHhcccCCcc--h-----hhHHHHHHHHHHHHHH-
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERG---VEPNVVTYNVLLNGVCRRASLHPS--E-----RFEKTIRNAEKVFDEM- 70 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~~--~-----~~~~~~~~a~~~~~~~- 70 (302)
|..|+..|...|+.++|+++|.+..... ..--..-+..+++-+.+.+..... . -+..+.+...++|-.-
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 7789999999999999999999987631 111112233344433332211000 0 0012223333333330
Q ss_pred --HhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhc
Q 022131 71 --RVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS 126 (302)
Q Consensus 71 --~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 126 (302)
....+.+ ..+-.|......+.+..+++.+....-.++....+.++..|+.
T Consensus 587 ~~~~~sis~------~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISR------DDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCH------HHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 0011111 1223456677788899999998777656677778888888774
No 468
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.68 E-value=3e+02 Score=26.00 Aligned_cols=153 Identities=12% Similarity=0.009 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
|..++..+.+.+++++|++++..- .....--..-..++ ...+.+....|..+.+.. +..-
T Consensus 533 ~~~vv~~~~q~e~yeeaLevL~~~--~~~el~yk~ap~Li---------------~~~p~~tV~~wm~~~d~~---~~~l 592 (911)
T KOG2034|consen 533 YEFVVSYWIQQENYEEALEVLLNQ--RNPELFYKYAPELI---------------THSPKETVSAWMAQKDLD---PNRL 592 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--cchhhHHHhhhHHH---------------hcCcHHHHHHHHHccccC---chhh
Q ss_pred HHHHHHHHHhc---CCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 022131 82 FSIVLHVYSRA---HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158 (302)
Q Consensus 82 ~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (302)
...+++.+.+. .....+...++.....-..-+...++.++..|++..+-+.-..+-......+. ...-....++.
T Consensus 593 i~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~--~~YDl~~alRl 670 (911)
T KOG2034|consen 593 IPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSR--VHYDLDYALRL 670 (911)
T ss_pred hHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhcccc--ceecHHHHHHH
Q ss_pred HHccCCchHHHHHHHHHH
Q 022131 159 YRGRKDANGAMKLYRQMK 176 (302)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~ 176 (302)
|.+.+....+..++..+.
T Consensus 671 c~~~~~~ra~V~l~~~l~ 688 (911)
T KOG2034|consen 671 CLKFKKTRACVFLLCMLN 688 (911)
T ss_pred HHHhCccceeeeHHHHHH
No 469
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.46 E-value=44 Score=20.54 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCC
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIERG 29 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~ 29 (302)
+++..+.++.--++|+++++.|.++|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 56788888999999999999999987
No 470
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=41.76 E-value=46 Score=16.33 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHCCCCCchhhHHH
Q 022131 236 WKEACQYFVEMIEKGLLPQKVTFET 260 (302)
Q Consensus 236 ~~~a~~~~~~~~~~~~~p~~~~~~~ 260 (302)
++.|..+|++.+. +.|+..+|..
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wik 25 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWIK 25 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHHH
Confidence 4555666666554 2455555443
No 471
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=41.23 E-value=3.1e+02 Score=25.78 Aligned_cols=84 Identities=11% Similarity=0.024 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---C----------CCCHHHHHHHHHHHH
Q 022131 166 NGAMKLYRQMKED-GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG---L----------GPDLDSYTMLIHGLC 231 (302)
Q Consensus 166 ~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~----------~~~~~~~~~li~~~~ 231 (302)
++..+.+.++.+. ++ ..+......+.. ...|++..|+.++++....+ + .++...+..++.+ +
T Consensus 181 eeIv~~L~~Il~~EgI-~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~a-L 256 (830)
T PRK07003 181 GHIVSHLERILGEERI-AFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDA-L 256 (830)
T ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHH-H
Confidence 4555666665443 43 455555555544 34688888888877755432 1 1233334444443 3
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC
Q 022131 232 EKQKWKEACQYFVEMIEKGLLP 253 (302)
Q Consensus 232 ~~g~~~~a~~~~~~~~~~~~~p 253 (302)
..|++.+++.+++++...|+.+
T Consensus 257 ~~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 257 AAGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred HcCCHHHHHHHHHHHHHhCCCH
Confidence 4477888888888887776644
No 472
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=40.98 E-value=84 Score=19.18 Aligned_cols=14 Identities=0% Similarity=0.202 Sum_probs=6.5
Q ss_pred HhcCCHHHHHHHHH
Q 022131 196 MALNRMDMVREIWN 209 (302)
Q Consensus 196 ~~~~~~~~a~~~~~ 209 (302)
++.|+++.+..+++
T Consensus 5 ~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 5 AQNGNLEILKFLLE 18 (89)
T ss_dssp HHTTTHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 44555544444444
No 473
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=40.93 E-value=91 Score=19.57 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=28.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
++|+-....|+..|...|..++....-+=-++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666666777777777776666555566666666666653
No 474
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=40.84 E-value=1.1e+02 Score=20.40 Aligned_cols=40 Identities=15% Similarity=0.038 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV 44 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 44 (302)
++|..+.++...++|+++.+.|.++| ..+...-+.|-..+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 46788889999999999999999987 33444444444333
No 475
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=40.40 E-value=2.3e+02 Score=24.15 Aligned_cols=30 Identities=7% Similarity=-0.003 Sum_probs=20.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 022131 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145 (302)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 145 (302)
++..-|+.+.|.+++..|-.+-+++++.+.
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel~p 331 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLELNP 331 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCC
Confidence 455666777788888888888888877654
No 476
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=39.93 E-value=2.7e+02 Score=24.78 Aligned_cols=133 Identities=14% Similarity=0.180 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 022131 128 GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN-MHSYNILIGMFMALNRMDMVRE 206 (302)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 206 (302)
|++++|+...+.....+...-+.-..+.+.-++...........+..+...+ |+ ..+...++..+.. ...+.+
T Consensus 323 ~~l~eal~~~e~~c~~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~---P~~~~~le~l~~~~~~---~~~~~~ 396 (547)
T PF14929_consen 323 GRLKEALNELEKFCISSTCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKD---PTMSYSLERLILLHQK---DYSAEQ 396 (547)
T ss_pred ccHHHHHHHHHHhccCCCccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCC---CcHHHHHHHHHhhhhh---HHHHHH
Confidence 7788888777776554321112222222333344556677788888888774 43 2333333333322 456666
Q ss_pred HHHHH-HhCCCCCCHHHHHHHHHHHHH-cC-------CHHHHHHHHHHHHHC-CCCCchhhHHHHHHHHh
Q 022131 207 IWNDV-KGSGLGPDLDSYTMLIHGLCE-KQ-------KWKEACQYFVEMIEK-GLLPQKVTFETLYRGLI 266 (302)
Q Consensus 207 ~~~~~-~~~~~~~~~~~~~~li~~~~~-~g-------~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 266 (302)
+++.+ ......|...+|--+..++.+ .+ +...+..++-.+.+. +..-+...|..+.+..-
T Consensus 397 Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~ 466 (547)
T PF14929_consen 397 LLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLP 466 (547)
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhh
Confidence 66644 233455888899888888877 22 344555555555543 34455566665554444
No 477
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=39.81 E-value=2.1e+02 Score=23.50 Aligned_cols=87 Identities=14% Similarity=0.162 Sum_probs=38.4
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHH-HHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIE-DAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 163 (302)
+...+++.++.+.+..+-+.+... | .....++..++-...-.+ -+..+.+.+... ||......++++.+...
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~l---P-~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~ 244 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHL---P-PEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAP 244 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhC---C-hHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCC
Confidence 344555555555444444333332 1 223334444443333222 233333333332 56666666666665555
Q ss_pred CchHHHHHHHHHHhC
Q 022131 164 DANGAMKLYRQMKED 178 (302)
Q Consensus 164 ~~~~a~~~~~~~~~~ 178 (302)
........+..+...
T Consensus 245 ~~~~~~~~i~~~L~~ 259 (340)
T PF12069_consen 245 ASDLVAILIDALLQS 259 (340)
T ss_pred chhHHHHHHHHHhcC
Confidence 444444444454444
No 478
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=39.80 E-value=3.5e+02 Score=26.00 Aligned_cols=198 Identities=12% Similarity=0.093 Sum_probs=100.3
Q ss_pred chHHHHHHHHHhCCCccc-HHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcC
Q 022131 16 DMAERFLGEMIERGVEPN-VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS-RAH 93 (302)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~ 93 (302)
+++.++|+.+++. -|| ...+...+..+.... +...+..+++++.+++-+...+. .|... |.+.|+ +..
T Consensus 1092 e~~~k~~~~l~s~--ypd~lpll~~~l~kl~~~s--D~~kE~~~ki~eIl~~A~~Vi~~---~D~ea---L~~y~~~k~D 1161 (1304)
T KOG1114|consen 1092 EEAEKIYNYLKSS--YPDYLPLLEVRLAKLMQKS--DAVKETNKKIEEILSAADSVIQE---IDTEA---LARYYALKED 1161 (1304)
T ss_pred HHHHHHHHHHHHh--CcccchHHHHHHHHhhhhc--ccchHHHHHHHHHHHHHHHHHHh---hcHHH---HHHHHhcccC
Confidence 4588888888765 232 122222222222211 22222234444444444443332 13333 222333 233
Q ss_pred CchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHH
Q 022131 94 QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYR 173 (302)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 173 (302)
.-..|..+-.+|... -.+++.++.+.|. |+.-++.+... ..-|.. -.....+...+.|.
T Consensus 1162 ~r~da~klk~~me~q--------k~tli~AL~kKg~---a~ak~e~l~g~-~e~dae---------ee~s~ld~~~e~y~ 1220 (1304)
T KOG1114|consen 1162 TRPDAVKLKKKMEKQ--------KDTLIDALVKKGE---AFAKYEALKGH-KEQDAE---------EELSKLDSYNENYQ 1220 (1304)
T ss_pred CcchHHHHHHHHHHH--------HHHHHHHHHHhhh---HHhhhhhhccc-ccccch---------hhhhhhhhHHHHHH
Confidence 334577777777654 2457777776553 22222222211 111111 11122344555555
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022131 174 QMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG-SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246 (302)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 246 (302)
++.+--. ..|..++..-...+...|++..+.+++.++.+ .|-.++...|-.++..+...|.- ....+++.+
T Consensus 1221 el~kw~d-~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~~~ 1292 (1304)
T KOG1114|consen 1221 ELLKWLD-ASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVKNW 1292 (1304)
T ss_pred HHHHHhh-cCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHhhh
Confidence 5554322 45666777777777788888888888887765 45667777787777777777754 333444444
No 479
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=39.65 E-value=1.4e+02 Score=26.02 Aligned_cols=107 Identities=16% Similarity=0.088 Sum_probs=71.7
Q ss_pred HHHhcCCchhHHHHHHHHH---hcCCCcC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHH-------CCCCCC----
Q 022131 88 VYSRAHQPQLSLDKLNFMK---EKGICPT-----VATYSSVVKCLCSCGRIEDAEELLGEMVR-------NGVCPS---- 148 (302)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~---~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~~~---- 148 (302)
.+...|++.+|.+++...- ..|...+ -..||.+.-.+.+.|.+..+..+|.+..+ .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3445788888888876542 2232222 22346666667777888777777776654 354443
Q ss_pred -------hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 022131 149 -------AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197 (302)
Q Consensus 149 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (302)
..+||+=+ .|...|++-.|.+.|.+....- ..++..|-.+..+|..
T Consensus 329 ls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHH
Confidence 23455433 4678899999999999988775 6788899999988874
No 480
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.86 E-value=2.4e+02 Score=23.88 Aligned_cols=162 Identities=9% Similarity=0.032 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCC--CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC---------CCCCC
Q 022131 80 TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGI--CPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN---------GVCPS 148 (302)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 148 (302)
..+.-+...|...|+++.|++.|.+....-- .-....|..+|..-.-.|+|.....+..+.... .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4677888899999999999999999765421 113445666666666778887777776666543 12233
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHH-----HHHHHhCCCCC
Q 022131 149 AETYNCFFKEYRGRKDANGAMKLYRQMKED-----GLCVPNMHSYNILIGMFMALNRMDMVREI-----WNDVKGSGLGP 218 (302)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-----~~~~~~~~~~~ 218 (302)
...+..+...+.+ .+..|.+.|-..... +++.|+..+....+.+..--++-+--..+ |+...+ .
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle----l 304 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE----L 304 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh----c
Confidence 3344444443333 556655555433222 11233333333333343333332222222 233332 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 022131 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 219 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 249 (302)
.+..+..+..-| .+++...+++++++...
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhccc
Confidence 334444444433 35677777777776543
No 481
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=38.39 E-value=2.3e+02 Score=23.39 Aligned_cols=131 Identities=11% Similarity=0.139 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 022131 15 IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ 94 (302)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 94 (302)
.+++..++++....+. |.+......|.++-....... ..+|.....+|+-+... .|++.+--.-..+..+..-
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~ae----dtDW~~I~aLYdaL~~~--apSPvV~LNRAVAla~~~G 344 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAE----DTDWPAIDALYDALEQA--APSPVVTLNRAVALAMREG 344 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccC----CCChHHHHHHHHHHHHh--CCCCeEeehHHHHHHHhhh
Q ss_pred chhHHHHHHHHHhc-CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhH
Q 022131 95 PQLSLDKLNFMKEK-GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY 152 (302)
Q Consensus 95 ~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 152 (302)
++.++...+-+... ++.--...+..-...+.+.|+.++|..-|++.......+....|
T Consensus 345 p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 345 PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
No 482
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=38.02 E-value=3.1e+02 Score=24.79 Aligned_cols=198 Identities=9% Similarity=0.035 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHH
Q 022131 36 TYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA 115 (302)
Q Consensus 36 ~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 115 (302)
.|..|+..+.. -+.++..++++++.... .....+..++.+....|-.+.+.-+.+.+....+. +..
T Consensus 348 ~f~~Lv~~lr~-----------l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~-~~e 413 (618)
T PF01347_consen 348 KFSRLVRLLRT-----------LSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLT-DDE 413 (618)
T ss_dssp HHHHHHHHHTT-----------S-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S--HHH
T ss_pred HHHHHHHHHhc-----------CCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC-HHH
Confidence 46666665544 34566777787776542 35778899999999999866666566665554433 333
Q ss_pred HHHHHHHHHhcc-CCHHHHHHHHHHHHHC-CCCCC-------hhhHHHHHHHHHccC------------CchHHHHHHHH
Q 022131 116 TYSSVVKCLCSC-GRIEDAEELLGEMVRN-GVCPS-------AETYNCFFKEYRGRK------------DANGAMKLYRQ 174 (302)
Q Consensus 116 ~~~~ll~~~~~~-~~~~~a~~~~~~~~~~-~~~~~-------~~~~~~l~~~~~~~~------------~~~~a~~~~~~ 174 (302)
.-..+.....-. .--.+.++.+..+.+. ....+ ..++..++.-++... -.++....+..
T Consensus 414 a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~ 493 (618)
T PF01347_consen 414 AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQ 493 (618)
T ss_dssp HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHH
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHH
Confidence 334444433333 2233444444444432 11122 224556666666653 11222222222
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH
Q 022131 175 MKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC--EKQKWKEACQYFVEMIE 248 (302)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~ 248 (302)
.........+...-...+.++...|... +...+..........+...-...+.++. .....+++..++-.+-.
T Consensus 494 ~l~~~~~~~~~~~~~~~LkaLgN~g~~~-~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~ 568 (618)
T PF01347_consen 494 ELKEAVSRGDEEEKIVYLKALGNLGHPE-SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFM 568 (618)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHT-GG-GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH
T ss_pred HHHHHhhccCHHHHHHHHHHhhccCCch-hhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhc
Confidence 2221111334555666778888888764 4444444333322333444444555554 44556666666665543
No 483
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=37.84 E-value=3.5e+02 Score=26.80 Aligned_cols=149 Identities=14% Similarity=0.081 Sum_probs=81.4
Q ss_pred hcCCcchHHH------HHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHH-------HHhcCCCC
Q 022131 11 KINRIDMAER------FLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDE-------MRVRGIEP 77 (302)
Q Consensus 11 ~~g~~~~a~~------~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~-------~~~~~~~~ 77 (302)
..|.+.+|.+ ++...-..-.++....|..+-..+.+ .++.++|+..=.. +...+..-
T Consensus 944 ~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~----------~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 944 LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNR----------LGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhh----------hcchHHHHHhcccceeeechhccCCCHH
Confidence 3455555555 55422222134445566666666666 5666666554332 23222233
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhc-----C--CCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-----CC
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK-----G--ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN-----GV 145 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~ 145 (302)
+...|..+............|...+.+.... | .+|...+++.+-..+...++.+.|.+..+..... |.
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 4455666666666666778888877766543 2 2344444555555555567888888888877653 11
Q ss_pred --CCChhhHHHHHHHHHccCCchHHH
Q 022131 146 --CPSAETYNCFFKEYRGRKDANGAM 169 (302)
Q Consensus 146 --~~~~~~~~~l~~~~~~~~~~~~a~ 169 (302)
-.+..++..+.+.+...+++..+.
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al 1119 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNAL 1119 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHH
Confidence 124455556655555555554433
No 484
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=37.66 E-value=3.9e+02 Score=25.86 Aligned_cols=194 Identities=6% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCchhHHHHHHHH---HhcCCCcCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHCCCCCChhhHHHHH---
Q 022131 84 IVLHVYSRAHQPQLSLDKLNFM---KEKGICPTVATYSSVVKCLCSC-GRIEDAEELLGEMVRNGVCPSAETYNCFF--- 156 (302)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--- 156 (302)
..++-+...+++.+|..+.++= ...=..-++..|-.=+..+.+. ++.+---.++..+.+.++ +...|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDv--t~tmY~~~~~~~ 776 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDV--TKTMYKDTYPPS 776 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccc--cccccccccccc
Q ss_pred ---------HHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 022131 157 ---------KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN--RMDMVREIWNDVKGSGLGPDLDSYTM 225 (302)
Q Consensus 157 ---------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (302)
......++....-+.+....+.. .....-+..++.+|++.+ ++++|+.....+.+.+...-......
T Consensus 777 ~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~--~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alky 854 (928)
T PF04762_consen 777 SEAQPNSNSSTASSESKVNKICDAIRKALEKP--KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKY 854 (928)
T ss_pred cccccccccCCCccccHHHHHHHHHHHHhccc--ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhH
Q ss_pred HHHHHHHcCCHHHHHHHHH----HHHHCCCCCchhhHHHHHHHHhh-------------cchHHHHHHHHHhc
Q 022131 226 LIHGLCEKQKWKEACQYFV----EMIEKGLLPQKVTFETLYRGLIQ-------------SDMLRTWRRLKKKL 281 (302)
Q Consensus 226 li~~~~~~g~~~~a~~~~~----~~~~~~~~p~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~ 281 (302)
|+-.---+.-++.|+.+|+ .|+.+.-.-|+.-|-.+++-+.+ .+++++|.+-+.++
T Consensus 855 l~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 855 LCFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred heeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhh
No 485
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.07 E-value=1.2e+02 Score=19.74 Aligned_cols=48 Identities=8% Similarity=0.078 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHH
Q 022131 58 KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFM 105 (302)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 105 (302)
.+.+...+-+++....+....+-....|.-.|++.|+.+.|.+-|+.=
T Consensus 51 ~Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetE 98 (121)
T COG4259 51 AQTAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETE 98 (121)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHh
Confidence 334444455555554443222233334444556666666666655543
No 486
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=36.44 E-value=89 Score=21.71 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=19.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHH
Q 022131 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263 (302)
Q Consensus 231 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 263 (302)
.+.|-..+...++++|.++|+..+...++..++
T Consensus 120 k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 120 KSKGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred HHcCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 344555556666666666666666666655543
No 487
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=35.98 E-value=4.5e+02 Score=26.15 Aligned_cols=135 Identities=14% Similarity=0.058 Sum_probs=85.1
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHHH-------HHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhC-----
Q 022131 111 CPTVATYSSVVKCLCSCGRIEDAEELLGEM-------VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED----- 178 (302)
Q Consensus 111 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 178 (302)
++....|..+...+.+.|+.++|...=... ......-+...|..+...+...++...+...+.+....
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc
Confidence 345667888888889999999888765432 21222223455666665566666777777777666443
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 022131 179 G-LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG----L---GPDLDSYTMLIHGLCEKQKWKEACQYFVE 245 (302)
Q Consensus 179 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 245 (302)
| .-+|...+++.+-..+...+..+.|.+..+.+.+.. . -.+..++..+.+.+...+++..|....+.
T Consensus 1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 1 114444555555555556688888988888876531 1 13556777787777777877776665443
No 488
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.59 E-value=2.1e+02 Score=22.25 Aligned_cols=168 Identities=10% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 022131 6 IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV 85 (302)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (302)
|..|...-+|.-|-...++..+ ...+--++++ |.+ ..+-+--.++.+-....+++-+..-...+
T Consensus 137 MEiyS~ttRFalaCN~s~KIiE-----PIQSRCAiLR-ysk----------lsd~qiL~Rl~~v~k~Ekv~yt~dgLeai 200 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKIIE-----PIQSRCAILR-YSK----------LSDQQILKRLLEVAKAEKVNYTDDGLEAI 200 (333)
T ss_pred HHHHcccchhhhhhcchhhhhh-----hHHhhhHhhh-hcc----------cCHHHHHHHHHHHHHHhCCCCCcchHHHh
Q ss_pred HHHHHhcCCchhHHHHHHHHHhc------------CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHH
Q 022131 86 LHVYSRAHQPQLSLDKLNFMKEK------------GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153 (302)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (302)
+ +...||..+|+..++.-... --.|.+.....++..|.+ +++++|.+++.++-+.|. ......+
T Consensus 201 i--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgy-sp~Dii~ 276 (333)
T KOG0991|consen 201 I--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGY-SPEDIIT 276 (333)
T ss_pred h--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCC-CHHHHHH
Q ss_pred HHHHHHHccCCchHHH--HHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 022131 154 CFFKEYRGRKDANGAM--KLYRQMKEDGLCVPNMHSYNILIGMFM 196 (302)
Q Consensus 154 ~l~~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (302)
.+.+.+-... ..+-. ++++++--.. ..=....+++++.+.
T Consensus 277 ~~FRv~K~~~-~~E~~rlE~ikeig~th--mrI~eGv~s~LQl~g 318 (333)
T KOG0991|consen 277 TLFRVVKNMD-VAESLRLEFIKEIGLTH--MRILEGVNSLLQLSG 318 (333)
T ss_pred HHHHHHHhcc-HHHHHHHHHHHHHhhHH--hHHHhhHhHHHHHHH
No 489
>PRK10941 hypothetical protein; Provisional
Probab=35.51 E-value=2.2e+02 Score=22.50 Aligned_cols=77 Identities=8% Similarity=-0.054 Sum_probs=54.1
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 022131 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS-GLGPDLDSYTMLIHGLC 231 (302)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~ 231 (302)
+.+-.+|.+.++++.|+++.+.+..-. +.++.-+.--.-.|.+.|.+..|..=++...+. --.|+.......+....
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 445567788888888888888888875 556666666667788888888888887777654 23455555555555543
No 490
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=35.43 E-value=2.6e+02 Score=23.13 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022131 166 NGAMKLYRQMKEDGLCVPNM----HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230 (302)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 230 (302)
+++..++..+... .|+. .-|..++......|.++.++.+|++....|..|-...-..++..+
T Consensus 120 eei~~~L~~li~~---IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 120 EEILATLSDLIKN---IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3444455544443 3442 234455555555566666666666666665555554444444443
No 491
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=35.23 E-value=1.2e+02 Score=21.10 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=23.9
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 022131 124 LCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158 (302)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (302)
+.+.|-..+...+++++.+.|+..+...++.+++-
T Consensus 119 ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 119 AKSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred HHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 34446677777777777777777777777766654
No 492
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=35.17 E-value=3.5e+02 Score=27.04 Aligned_cols=157 Identities=10% Similarity=0.061 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHH
Q 022131 96 QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175 (302)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (302)
+.|.++.+.+........ ...++.-|.-..+-.-|+-.+-+..-+ .||..|-..||+=-...++|.. .+
T Consensus 50 ~~a~~l~~~~r~~~~~~~---~~~~~~e~~l~~~eg~~lm~laeallr--~pd~~t~d~li~dk~~~~~w~~------h~ 118 (1208)
T PRK11905 50 ERARKLVEALRAKRKGTG---VEALLQEYSLSSQEGVALMCLAEALLR--IPDTATRDALIRDKIAPGDWKS------HL 118 (1208)
T ss_pred HHHHHHHHHHHcCCCccc---HHHHHHhcCCCcHHHHHHHHHHHHhhc--CCChHHHHHHHHHHhccCChhh------hc
Confidence 556777777765542222 667777776665544454444444433 4888888888887777777632 12
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 022131 176 KEDGLCVPNMHSYNILIGMFMAL-NRMDMVREIWNDVKGSGLGPDLDS-----YTMLIHGLCEKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~g~~~~a~~~~~~~~~~ 249 (302)
-++...-.|..+|..++.+-.-. .+-......+..+.++.-.|-... ...|-+-|+--...++|++..+++.+.
T Consensus 119 ~~~~~~~vna~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~am~~~~~qFv~Geti~eal~~~~~l~~~ 198 (1208)
T PRK11905 119 GGSKSLFVNAATWGLMLTGKLLSTVNDRGLSAALTRLIARLGEPVIRKAVDMAMRMMGEQFVTGETIEEALKRARELEAR 198 (1208)
T ss_pred CCCCcceeeHHHHHHHHhceecCccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHhCeeccCCCHHHHHHHHHHHHhC
Confidence 22222245677887777654332 122333456666666533332221 123333445556789999999999888
Q ss_pred CCCCchhhHHHHHHHHh
Q 022131 250 GLLPQKVTFETLYRGLI 266 (302)
Q Consensus 250 ~~~p~~~~~~~l~~~~~ 266 (302)
|+. .++..+..+-.
T Consensus 199 G~~---~s~D~LGE~~~ 212 (1208)
T PRK11905 199 GYR---YSYDMLGEAAR 212 (1208)
T ss_pred CCE---EEEEeccCCcC
Confidence 876 44555554433
No 493
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.11 E-value=2.2e+02 Score=22.33 Aligned_cols=83 Identities=12% Similarity=0.071 Sum_probs=39.0
Q ss_pred CChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 022131 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226 (302)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 226 (302)
-++.....+...|.+.+++.+|...|-.-. .|+...+..++..+...|...++ +... ...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-----~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi-~Ra 147 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGT-----DPSAFAYVMLLEEWSTKGYPSEA--------------DLFI-ARA 147 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHHHHHTSS--H--------------HHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcC-----ChhHHHHHHHHHHHHHhcCCcch--------------hHHH-HHH
Confidence 355666677777777777776665443211 22333332233333333332222 1111 222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC
Q 022131 227 IHGLCEKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 227 i~~~~~~g~~~~a~~~~~~~~~~ 249 (302)
+--|...++...|...+....+.
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 33355567777777777666543
No 494
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.82 E-value=1.9e+02 Score=21.43 Aligned_cols=20 Identities=5% Similarity=0.031 Sum_probs=10.0
Q ss_pred HHHccCCchHHHHHHHHHHh
Q 022131 158 EYRGRKDANGAMKLYRQMKE 177 (302)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~ 177 (302)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 44455555555555555444
No 495
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=34.52 E-value=1.8e+02 Score=21.19 Aligned_cols=107 Identities=11% Similarity=0.208 Sum_probs=46.1
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022131 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
..++..+.+.|.-.|...-...+..-.+.| ..-..+..++.+.|+ +..+....+..+......+.|..++.+-..
T Consensus 55 e~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi---~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~ 129 (174)
T COG2137 55 EEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI---DDEIIEEALELIDEEDEQERARKVLRKKFK 129 (174)
T ss_pred HHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC---CHHHHHHHHhccchHHHHHHHHHHHHHHhC
Confidence 334444444444444443344444444444 344455555555553 333444444444444444455554444333
Q ss_pred C-CCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 022131 214 S-GLGPDLDSYTMLIHGLCEKQ-KWKEACQYFVE 245 (302)
Q Consensus 214 ~-~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~ 245 (302)
. +.+|+..-...+...+...| .++.+..++..
T Consensus 130 ~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~ 163 (174)
T COG2137 130 RENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNE 163 (174)
T ss_pred ccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 23344333444444444333 23333333333
No 496
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=34.32 E-value=2.2e+02 Score=21.96 Aligned_cols=17 Identities=6% Similarity=0.020 Sum_probs=11.0
Q ss_pred cCCHHHHHHHHHHHHHC
Q 022131 233 KQKWKEACQYFVEMIEK 249 (302)
Q Consensus 233 ~g~~~~a~~~~~~~~~~ 249 (302)
.++...|..++++..+.
T Consensus 191 ~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 191 AETLQLALALLQRAFQL 207 (230)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 34566777777777653
No 497
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=34.19 E-value=2.3e+02 Score=27.30 Aligned_cols=60 Identities=10% Similarity=0.100 Sum_probs=35.9
Q ss_pred ccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 022131 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220 (302)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (302)
......+++++|..|...|+..-....|......+.+.+.+.+|..+|+.-.+....|-.
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~ 149 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLE 149 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 444556666666666666654444455555556666666666776666666555444443
No 498
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=34.16 E-value=70 Score=19.68 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=22.3
Q ss_pred cCCHHHHHHHHHHHHH---CCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccc
Q 022131 233 KQKWKEACQYFVEMIE---KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 233 ~g~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
.|+.+.|+..|+..++ .|+..... .......++.|.++-++|.+
T Consensus 21 ~g~~e~Al~~Y~~gi~~l~eg~ai~~~-------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 21 WGDKEQALAHYRKGLRELEEGIAVPVP-------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCC-------cccccHHHHHHHHHHHHHHH
Confidence 3666666666665433 23322221 22334456666666666654
No 499
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.99 E-value=2.9e+02 Score=23.42 Aligned_cols=165 Identities=9% Similarity=0.002 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhc-----
Q 022131 36 TYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG--IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK----- 108 (302)
Q Consensus 36 ~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 108 (302)
.+.-+...|.. .|+++.|++.|.+....- .+-.+..|-.+|..-.-.|+|.....+..+..+.
T Consensus 152 a~~Dl~dhy~~----------cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 152 ALEDLGDHYLD----------CGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHH----------hccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 45666666777 888999999998865431 1223455666777777788988877777776554
Q ss_pred ----CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-CC-----CCCChhhHHHHHHHHHccCCchHHHHHHHHHHhC
Q 022131 109 ----GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR-NG-----VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178 (302)
Q Consensus 109 ----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (302)
.+++-...+..+.....+ ++..|...|-.... .. +.|...+....+.+.+..++-+--..+.....-.
T Consensus 222 ~~~q~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk 299 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFK 299 (466)
T ss_pred hHHHhcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhh
Confidence 123333344444444433 55555544433221 11 2344444444455555544443333332222111
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022131 179 GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214 (302)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (302)
......+..+..+...| .+++..+.++++++...
T Consensus 300 ~flel~Pqlr~il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 300 LFLELEPQLREILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred hHHhcChHHHHHHHHHh--hhhHHHHHHHHHHhccc
Confidence 11122334445555444 34678888888877653
No 500
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=33.83 E-value=15 Score=20.70 Aligned_cols=30 Identities=27% Similarity=0.480 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 022131 61 RNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90 (302)
Q Consensus 61 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (302)
++.+.+|+.|..+...|....|+-.+.-|.
T Consensus 9 ~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~ 38 (55)
T PF07443_consen 9 EELIAVFKQMPSRNYDPKTRKWNFSLEDYS 38 (55)
T ss_pred HHHHHHHHcCcccccCccceeeeeeHHHHH
Confidence 567889999999888888877777666553
Done!