Query 022131
Match_columns 302
No_of_seqs 519 out of 1367
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 14:28:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.1E-36 1.1E-40 251.5 24.8 208 61-269 7-224 (501)
2 4g26_A Pentatricopeptide repea 100.0 5.4E-36 1.8E-40 250.0 22.5 195 2-198 29-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 3.2E-27 1.1E-31 203.6 30.1 268 2-286 308-581 (597)
4 2xpi_A Anaphase-promoting comp 100.0 4.3E-28 1.5E-32 209.0 20.7 266 2-285 275-546 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 3.1E-22 1.1E-26 163.5 30.8 276 2-285 70-369 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 5.4E-22 1.9E-26 162.1 31.4 267 2-284 36-334 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 4.1E-21 1.4E-25 159.8 30.1 263 2-283 29-357 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.1E-20 3.8E-25 157.2 30.0 256 2-266 63-374 (450)
9 3hym_B Cell division cycle pro 99.9 6.5E-20 2.2E-24 146.1 29.7 268 2-286 25-301 (330)
10 4eqf_A PEX5-related protein; a 99.9 1.2E-20 4.1E-25 152.8 23.4 264 2-280 68-352 (365)
11 1fch_A Peroxisomal targeting s 99.9 3.8E-20 1.3E-24 149.9 24.9 262 2-281 67-356 (368)
12 3cv0_A Peroxisome targeting si 99.9 1E-19 3.4E-24 144.9 25.1 265 2-283 24-314 (327)
13 3ieg_A DNAJ homolog subfamily 99.9 4.4E-18 1.5E-22 137.0 30.9 265 3-284 7-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 7.1E-18 2.4E-22 135.8 31.8 248 2-267 40-352 (359)
15 3spa_A Mtrpol, DNA-directed RN 99.9 1.8E-21 6.2E-26 168.5 10.3 148 1-163 129-286 (1134)
16 2gw1_A Mitochondrial precursor 99.9 1.3E-18 4.3E-23 147.1 27.3 94 3-109 10-103 (514)
17 3spa_A Mtrpol, DNA-directed RN 99.8 1.1E-20 3.6E-25 163.8 11.4 128 148-276 126-257 (1134)
18 1fch_A Peroxisomal targeting s 99.8 1.6E-18 5.3E-23 140.4 22.6 262 8-284 34-314 (368)
19 3mkr_A Coatomer subunit epsilo 99.8 3.1E-18 1.1E-22 134.0 23.0 254 6-286 6-266 (291)
20 4eqf_A PEX5-related protein; a 99.8 2.7E-18 9.3E-23 139.0 22.5 239 33-285 64-311 (365)
21 3hym_B Cell division cycle pro 99.8 9.9E-18 3.4E-22 133.5 25.0 241 30-286 18-267 (330)
22 2gw1_A Mitochondrial precursor 99.8 8.2E-18 2.8E-22 142.1 25.6 222 58-285 203-445 (514)
23 3fp2_A TPR repeat-containing p 99.8 3.4E-17 1.2E-21 139.2 28.9 264 2-285 28-408 (537)
24 3mkr_A Coatomer subunit epsilo 99.8 4.5E-17 1.5E-21 127.4 25.1 245 4-278 39-288 (291)
25 3fp2_A TPR repeat-containing p 99.8 1.2E-16 4.2E-21 135.7 30.0 222 58-286 216-459 (537)
26 3uq3_A Heat shock protein STI1 99.8 6.7E-17 2.3E-21 124.1 22.9 223 2-249 8-236 (258)
27 2pl2_A Hypothetical conserved 99.8 6.3E-17 2.2E-21 121.2 21.5 201 76-283 2-213 (217)
28 3cv0_A Peroxisome targeting si 99.8 1.2E-16 4.3E-21 126.9 23.0 237 33-286 20-271 (327)
29 3uq3_A Heat shock protein STI1 99.8 1.4E-16 4.9E-21 122.2 21.9 227 34-285 5-237 (258)
30 1b89_A Protein (clathrin heavy 99.8 1.3E-18 4.6E-23 139.8 9.3 222 11-284 15-236 (449)
31 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.1E-16 3.9E-21 124.0 17.6 247 11-278 17-269 (275)
32 2ho1_A Type 4 fimbrial biogene 99.7 2.1E-15 7.3E-20 115.4 24.3 203 79-285 37-239 (252)
33 2vq2_A PILW, putative fimbrial 99.7 3.7E-15 1.3E-19 111.8 24.9 201 34-248 8-210 (225)
34 1b89_A Protein (clathrin heavy 99.7 3.6E-17 1.2E-21 131.6 14.4 232 1-279 34-267 (449)
35 2pl2_A Hypothetical conserved 99.7 4.8E-16 1.6E-20 116.4 19.6 201 31-248 2-213 (217)
36 2ho1_A Type 4 fimbrial biogene 99.7 4.6E-15 1.6E-19 113.5 25.2 197 57-260 50-247 (252)
37 2h6f_A Protein farnesyltransfe 99.7 8.4E-15 2.9E-19 118.4 27.1 245 2-266 100-364 (382)
38 2vq2_A PILW, putative fimbrial 99.7 6.6E-15 2.3E-19 110.4 24.3 206 77-285 6-212 (225)
39 3u4t_A TPR repeat-containing p 99.7 4.5E-15 1.5E-19 114.9 22.7 231 4-249 8-250 (272)
40 2q7f_A YRRB protein; TPR, prot 99.7 1.9E-15 6.4E-20 115.0 19.9 201 33-249 22-222 (243)
41 1ouv_A Conserved hypothetical 99.7 5.5E-14 1.9E-18 109.0 28.3 226 33-287 5-254 (273)
42 2q7f_A YRRB protein; TPR, prot 99.7 1.9E-15 6.3E-20 115.0 19.5 208 2-226 26-233 (243)
43 3u4t_A TPR repeat-containing p 99.7 4.8E-15 1.6E-19 114.7 21.7 236 35-285 4-251 (272)
44 2h6f_A Protein farnesyltransfe 99.7 1.1E-14 3.9E-19 117.7 22.9 230 34-281 97-344 (382)
45 1xnf_A Lipoprotein NLPI; TPR, 99.7 1E-14 3.5E-19 113.0 21.7 222 57-285 18-245 (275)
46 4abn_A Tetratricopeptide repea 99.7 3.4E-14 1.2E-18 118.8 26.2 219 57-282 81-319 (474)
47 1ouv_A Conserved hypothetical 99.7 3.2E-13 1.1E-17 104.6 27.7 224 2-250 9-252 (273)
48 4a1s_A PINS, partner of inscut 99.7 1.5E-15 5.3E-20 124.7 15.4 270 4-284 53-372 (411)
49 2ond_A Cleavage stimulation fa 99.7 1.5E-13 5.1E-18 108.5 25.6 220 61-286 33-272 (308)
50 3vtx_A MAMA; tetratricopeptide 99.7 9.2E-14 3.2E-18 101.0 22.2 171 78-255 4-174 (184)
51 2ond_A Cleavage stimulation fa 99.7 3.3E-13 1.1E-17 106.5 26.4 226 16-249 33-270 (308)
52 3sf4_A G-protein-signaling mod 99.6 5E-15 1.7E-19 121.2 15.3 269 4-283 14-335 (406)
53 3ro2_A PINS homolog, G-protein 99.6 6.8E-15 2.3E-19 117.1 14.8 271 4-285 10-333 (338)
54 4g1t_A Interferon-induced prot 99.6 7.2E-13 2.5E-17 110.8 26.1 198 2-213 54-275 (472)
55 3vtx_A MAMA; tetratricopeptide 99.6 4.6E-13 1.6E-17 97.3 20.3 167 33-214 4-170 (184)
56 2xm6_A Protein corresponding t 99.6 1.3E-11 4.5E-16 103.8 31.9 210 58-286 201-434 (490)
57 2xm6_A Protein corresponding t 99.6 2.6E-11 8.7E-16 102.0 33.6 110 59-177 130-251 (490)
58 4abn_A Tetratricopeptide repea 99.6 6.3E-14 2.1E-18 117.2 17.4 214 15-246 84-318 (474)
59 3nf1_A KLC 1, kinesin light ch 99.6 1.1E-13 3.7E-18 109.1 17.8 206 78-283 26-306 (311)
60 3nf1_A KLC 1, kinesin light ch 99.6 9.3E-14 3.2E-18 109.5 16.2 208 31-248 24-306 (311)
61 4g1t_A Interferon-induced prot 99.6 1E-11 3.4E-16 103.9 27.7 269 2-284 97-401 (472)
62 2ooe_A Cleavage stimulation fa 99.5 1.6E-11 5.6E-16 104.2 28.3 217 62-284 256-492 (530)
63 1hz4_A MALT regulatory protein 99.5 8.4E-12 2.9E-16 101.1 25.0 268 6-283 21-321 (373)
64 3as5_A MAMA; tetratricopeptide 99.5 2.1E-12 7.1E-17 93.6 19.4 165 79-248 8-172 (186)
65 3edt_B KLC 2, kinesin light ch 99.5 3E-13 1E-17 104.9 15.1 226 57-283 21-280 (283)
66 2ooe_A Cleavage stimulation fa 99.5 4.4E-11 1.5E-15 101.6 28.7 265 2-284 16-385 (530)
67 3ulq_A Response regulator aspa 99.5 6.1E-12 2.1E-16 102.4 22.5 230 9-248 22-292 (383)
68 3as5_A MAMA; tetratricopeptide 99.5 3.2E-12 1.1E-16 92.6 18.2 167 114-285 8-174 (186)
69 3ulq_A Response regulator aspa 99.5 3E-12 1E-16 104.2 19.6 224 57-284 116-368 (383)
70 4i17_A Hypothetical protein; T 99.5 1.2E-11 3.9E-16 93.1 21.2 196 77-285 5-210 (228)
71 3sf4_A G-protein-signaling mod 99.5 4.5E-13 1.5E-17 109.6 14.4 260 2-271 50-363 (406)
72 4gyw_A UDP-N-acetylglucosamine 99.5 3.7E-12 1.2E-16 111.0 19.9 166 78-248 8-173 (723)
73 4a1s_A PINS, partner of inscut 99.5 4E-13 1.4E-17 110.3 12.4 239 35-284 49-332 (411)
74 1qqe_A Vesicular transport pro 99.5 1.1E-11 3.9E-16 96.9 19.6 239 16-284 2-269 (292)
75 4i17_A Hypothetical protein; T 99.5 2.7E-11 9.2E-16 91.1 20.5 155 112-271 5-169 (228)
76 1xi4_A Clathrin heavy chain; a 99.4 4.4E-11 1.5E-15 107.9 23.9 229 5-282 1055-1307(1630)
77 3ro2_A PINS homolog, G-protein 99.4 1.9E-12 6.6E-17 102.8 13.6 238 36-284 7-292 (338)
78 4gyw_A UDP-N-acetylglucosamine 99.4 1E-11 3.4E-16 108.3 18.9 166 33-213 8-173 (723)
79 3edt_B KLC 2, kinesin light ch 99.4 3.1E-12 1.1E-16 99.2 14.2 161 89-249 11-198 (283)
80 3q15_A PSP28, response regulat 99.4 3.9E-11 1.3E-15 97.4 19.2 228 7-248 109-364 (378)
81 3q15_A PSP28, response regulat 99.4 4.2E-11 1.4E-15 97.2 19.0 222 57-283 114-364 (378)
82 1xi4_A Clathrin heavy chain; a 99.4 3.3E-10 1.1E-14 102.5 25.5 227 11-279 1088-1340(1630)
83 3qky_A Outer membrane assembly 99.4 4.1E-11 1.4E-15 92.1 16.3 192 77-273 13-250 (261)
84 2fo7_A Synthetic consensus TPR 99.3 2E-10 6.7E-15 78.3 16.5 127 118-248 5-131 (136)
85 3mv2_B Coatomer subunit epsilo 99.3 7.5E-10 2.6E-14 85.6 21.2 164 78-248 99-281 (310)
86 3e4b_A ALGK; tetratricopeptide 99.3 1.5E-10 5.2E-15 96.1 18.2 157 116-286 178-353 (452)
87 3mv2_B Coatomer subunit epsilo 99.3 4.6E-10 1.6E-14 86.8 19.1 180 98-285 85-283 (310)
88 2fo7_A Synthetic consensus TPR 99.3 3.4E-10 1.2E-14 77.1 16.9 131 80-214 2-132 (136)
89 3urz_A Uncharacterized protein 99.3 2.6E-10 8.9E-15 84.5 16.9 173 80-260 5-195 (208)
90 3rjv_A Putative SEL1 repeat pr 99.3 2.3E-09 7.9E-14 79.6 21.6 176 62-251 4-199 (212)
91 3e4b_A ALGK; tetratricopeptide 99.3 9.8E-09 3.4E-13 85.3 26.6 223 36-283 178-420 (452)
92 1hz4_A MALT regulatory protein 99.3 2.1E-09 7.2E-14 87.0 21.8 227 57-283 27-281 (373)
93 1qqe_A Vesicular transport pro 99.3 5.6E-10 1.9E-14 87.2 17.2 208 14-248 32-268 (292)
94 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.6E-09 1.2E-13 79.3 19.2 188 78-287 3-216 (225)
95 3dra_A Protein farnesyltransfe 99.2 3.3E-08 1.1E-12 77.0 25.0 224 9-248 42-286 (306)
96 3rjv_A Putative SEL1 repeat pr 99.2 3.1E-09 1E-13 78.9 18.6 178 16-216 3-199 (212)
97 3qou_A Protein YBBN; thioredox 99.2 1E-09 3.5E-14 85.5 16.6 163 113-280 116-280 (287)
98 2pzi_A Probable serine/threoni 99.2 5.2E-10 1.8E-14 97.7 16.2 185 90-282 402-603 (681)
99 2yhc_A BAMD, UPF0169 lipoprote 99.2 6.6E-09 2.2E-13 77.9 20.2 170 57-249 17-213 (225)
100 2pzi_A Probable serine/threoni 99.2 2.8E-10 9.5E-15 99.4 14.2 171 57-235 404-583 (681)
101 3qky_A Outer membrane assembly 99.2 3.3E-09 1.1E-13 81.4 18.7 170 112-285 13-225 (261)
102 2r5s_A Uncharacterized protein 99.2 3.5E-10 1.2E-14 81.4 12.2 161 82-247 9-171 (176)
103 2ifu_A Gamma-SNAP; membrane fu 99.2 5.8E-09 2E-13 82.1 19.7 216 57-277 4-254 (307)
104 3urz_A Uncharacterized protein 99.2 3.3E-09 1.1E-13 78.5 16.8 167 114-286 4-188 (208)
105 2vsy_A XCC0866; transferase, g 99.2 2.1E-09 7.1E-14 92.1 17.7 154 57-215 2-158 (568)
106 4ga2_A E3 SUMO-protein ligase 99.1 1.3E-09 4.5E-14 76.1 13.1 139 57-200 10-149 (150)
107 3qou_A Protein YBBN; thioredox 99.1 2.5E-09 8.4E-14 83.3 16.1 168 76-248 114-283 (287)
108 4ga2_A E3 SUMO-protein ligase 99.1 2.7E-10 9.1E-15 79.7 9.5 112 89-204 7-118 (150)
109 2vsy_A XCC0866; transferase, g 99.1 2.6E-09 9E-14 91.4 17.4 153 92-249 2-157 (568)
110 3dra_A Protein farnesyltransfe 99.1 4.6E-08 1.6E-12 76.2 21.6 218 61-284 50-287 (306)
111 1hh8_A P67PHOX, NCF-2, neutrop 99.1 2.8E-08 9.5E-13 73.5 19.7 124 119-248 11-149 (213)
112 2r5s_A Uncharacterized protein 99.1 2.8E-09 9.7E-14 76.6 13.2 151 57-211 19-170 (176)
113 2ifu_A Gamma-SNAP; membrane fu 99.1 8.3E-09 2.8E-13 81.2 16.3 217 11-242 3-254 (307)
114 3u3w_A Transcriptional activat 99.1 4.8E-08 1.6E-12 76.3 19.9 162 86-247 82-264 (293)
115 4e6h_A MRNA 3'-END-processing 99.0 7.7E-08 2.6E-12 83.2 21.5 223 60-287 325-573 (679)
116 4e6h_A MRNA 3'-END-processing 99.0 8.1E-08 2.8E-12 83.1 21.5 235 16-266 326-585 (679)
117 3q7a_A Farnesyltransferase alp 99.0 5.7E-07 2E-11 71.0 24.0 223 11-249 66-331 (349)
118 3u3w_A Transcriptional activat 99.0 9.6E-08 3.3E-12 74.5 19.6 208 67-283 34-265 (293)
119 1hh8_A P67PHOX, NCF-2, neutrop 99.0 5.3E-08 1.8E-12 72.0 17.3 127 81-214 8-150 (213)
120 2qfc_A PLCR protein; TPR, HTH, 99.0 9.1E-08 3.1E-12 74.7 19.3 169 114-282 75-264 (293)
121 2qfc_A PLCR protein; TPR, HTH, 99.0 1.5E-07 5.2E-12 73.4 20.4 170 79-248 75-265 (293)
122 1a17_A Serine/threonine protei 99.0 6E-08 2E-12 68.5 16.2 93 118-213 17-109 (166)
123 2e2e_A Formate-dependent nitri 99.0 1.7E-08 6E-13 72.4 13.5 119 91-213 22-143 (177)
124 1a17_A Serine/threonine protei 99.0 7.6E-08 2.6E-12 68.0 16.4 131 149-283 13-145 (166)
125 2c2l_A CHIP, carboxy terminus 98.9 1.3E-08 4.5E-13 79.0 12.4 195 78-284 3-199 (281)
126 3gyz_A Chaperone protein IPGC; 98.9 1.2E-07 4.2E-12 65.9 16.1 102 149-255 36-137 (151)
127 1na0_A Designed protein CTPR3; 98.9 9.8E-08 3.4E-12 63.7 14.7 98 79-178 9-106 (125)
128 1na0_A Designed protein CTPR3; 98.9 1.2E-07 4E-12 63.3 15.1 96 115-213 10-105 (125)
129 4gco_A Protein STI-1; structur 98.9 1.2E-07 4E-12 63.9 14.5 93 153-248 17-109 (126)
130 3gw4_A Uncharacterized protein 98.9 2.5E-08 8.4E-13 73.1 12.1 159 90-249 3-176 (203)
131 4gco_A Protein STI-1; structur 98.9 1.3E-07 4.4E-12 63.7 14.6 96 81-178 15-110 (126)
132 2lni_A Stress-induced-phosphop 98.9 1E-07 3.5E-12 64.5 14.4 117 78-198 15-131 (133)
133 2e2e_A Formate-dependent nitri 98.9 7.1E-08 2.4E-12 69.2 13.9 119 126-248 22-143 (177)
134 2lni_A Stress-induced-phosphop 98.9 1.4E-07 4.9E-12 63.8 14.5 98 148-248 15-112 (133)
135 3q7a_A Farnesyltransferase alp 98.9 6.2E-07 2.1E-11 70.8 19.6 219 60-284 70-331 (349)
136 2vyi_A SGTA protein; chaperone 98.9 1.3E-07 4.4E-12 63.7 14.0 117 79-199 12-128 (131)
137 2vyi_A SGTA protein; chaperone 98.9 1.4E-07 4.7E-12 63.5 13.9 116 115-234 13-128 (131)
138 2vgx_A Chaperone SYCD; alterna 98.8 3.5E-08 1.2E-12 68.6 10.5 97 149-248 21-117 (148)
139 1p5q_A FKBP52, FK506-binding p 98.8 1.7E-07 5.7E-12 74.7 15.6 151 93-247 127-292 (336)
140 3gyz_A Chaperone protein IPGC; 98.8 2.1E-07 7.1E-12 64.8 14.3 98 114-214 36-133 (151)
141 1p5q_A FKBP52, FK506-binding p 98.8 1.8E-07 6.1E-12 74.5 15.6 132 78-212 146-292 (336)
142 3gw4_A Uncharacterized protein 98.8 6.9E-08 2.4E-12 70.7 12.3 156 57-213 5-175 (203)
143 3dss_A Geranylgeranyl transfer 98.8 1.6E-05 5.4E-10 62.5 26.0 232 8-248 38-303 (331)
144 2fbn_A 70 kDa peptidylprolyl i 98.8 2.1E-08 7.3E-13 73.4 8.7 164 87-275 12-176 (198)
145 2vgx_A Chaperone SYCD; alterna 98.8 6.2E-08 2.1E-12 67.3 9.7 97 114-213 21-117 (148)
146 4f3v_A ESX-1 secretion system 98.8 5.3E-07 1.8E-11 68.9 15.4 197 57-260 19-246 (282)
147 3dss_A Geranylgeranyl transfer 98.8 9.3E-06 3.2E-10 63.8 22.8 214 61-283 47-303 (331)
148 3upv_A Heat shock protein STI1 98.8 5E-07 1.7E-11 60.7 13.7 95 151-248 6-100 (126)
149 1elw_A TPR1-domain of HOP; HOP 98.7 9.7E-07 3.3E-11 58.1 14.6 97 80-178 5-101 (118)
150 2fbn_A 70 kDa peptidylprolyl i 98.7 4.5E-08 1.5E-12 71.7 8.5 99 186-285 39-152 (198)
151 4f3v_A ESX-1 secretion system 98.7 2.9E-07 1E-11 70.3 13.0 190 91-287 18-240 (282)
152 2c2l_A CHIP, carboxy terminus 98.7 1.1E-07 3.9E-12 73.7 10.9 194 33-248 3-198 (281)
153 3q49_B STIP1 homology and U bo 98.7 2E-06 7E-11 58.4 15.9 98 148-248 8-105 (137)
154 1elr_A TPR2A-domain of HOP; HO 98.7 4.1E-07 1.4E-11 61.2 12.1 109 150-262 5-119 (131)
155 1elw_A TPR1-domain of HOP; HOP 98.7 1.7E-06 5.7E-11 56.9 14.9 94 152-248 7-100 (118)
156 3upv_A Heat shock protein STI1 98.7 1E-06 3.4E-11 59.2 13.8 95 116-213 6-100 (126)
157 4gcn_A Protein STI-1; structur 98.7 6.7E-07 2.3E-11 60.2 12.8 104 151-258 10-119 (127)
158 2xcb_A PCRH, regulatory protei 98.7 1.1E-06 3.6E-11 60.5 14.0 96 150-248 19-114 (142)
159 3sz7_A HSC70 cochaperone (SGT) 98.7 1.8E-06 6E-11 61.0 15.2 96 150-248 12-107 (164)
160 4gcn_A Protein STI-1; structur 98.7 7.4E-07 2.5E-11 60.1 12.2 98 80-178 9-112 (127)
161 2kck_A TPR repeat; tetratricop 98.6 7.1E-07 2.4E-11 58.2 11.4 56 155-212 12-67 (112)
162 2kck_A TPR repeat; tetratricop 98.6 6.4E-07 2.2E-11 58.4 11.0 97 80-178 7-106 (112)
163 3sz7_A HSC70 cochaperone (SGT) 98.6 1.3E-06 4.5E-11 61.7 13.3 100 78-179 10-109 (164)
164 2xcb_A PCRH, regulatory protei 98.6 8.9E-07 3E-11 60.9 12.0 92 119-213 23-114 (142)
165 2uy1_A Cleavage stimulation fa 98.6 9.6E-05 3.3E-09 61.9 25.9 122 152-282 289-411 (493)
166 3q49_B STIP1 homology and U bo 98.6 2.2E-06 7.4E-11 58.3 13.5 98 113-213 8-105 (137)
167 1elr_A TPR2A-domain of HOP; HO 98.6 8E-07 2.7E-11 59.7 10.9 62 80-142 5-66 (131)
168 4b4t_Q 26S proteasome regulato 98.6 7.7E-06 2.6E-10 67.3 18.9 192 57-248 17-244 (434)
169 2dba_A Smooth muscle cell asso 98.6 3.5E-06 1.2E-10 57.9 14.4 98 78-178 27-128 (148)
170 2dba_A Smooth muscle cell asso 98.6 6.5E-06 2.2E-10 56.6 15.6 96 149-248 28-127 (148)
171 4b4t_Q 26S proteasome regulato 98.6 9.6E-06 3.3E-10 66.7 18.9 197 86-282 11-243 (434)
172 1hxi_A PEX5, peroxisome target 98.5 1.9E-06 6.4E-11 57.5 10.9 89 156-247 24-112 (121)
173 3ro3_A PINS homolog, G-protein 98.5 1.4E-06 4.9E-11 60.8 10.8 133 116-248 11-157 (164)
174 2xev_A YBGF; tetratricopeptide 98.5 8.6E-06 2.9E-10 54.6 13.6 91 155-248 8-104 (129)
175 1hxi_A PEX5, peroxisome target 98.5 3E-06 1E-10 56.5 11.0 92 119-213 22-113 (121)
176 3ro3_A PINS homolog, G-protein 98.4 2.6E-06 8.7E-11 59.5 10.5 135 149-283 9-157 (164)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 7E-06 2.4E-10 68.2 14.7 149 94-246 249-412 (457)
178 1wao_1 Serine/threonine protei 98.4 2.3E-06 7.7E-11 71.5 11.5 116 159-279 16-134 (477)
179 3k9i_A BH0479 protein; putativ 98.4 9.3E-07 3.2E-11 58.6 7.4 86 92-178 3-90 (117)
180 2xev_A YBGF; tetratricopeptide 98.4 2.6E-05 8.8E-10 52.2 14.7 92 120-214 8-105 (129)
181 3rkv_A Putative peptidylprolyl 98.4 8E-06 2.7E-10 57.4 12.6 121 114-256 11-131 (162)
182 1wao_1 Serine/threonine protei 98.4 1.5E-06 5.2E-11 72.6 10.1 119 122-244 14-134 (477)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 6.4E-06 2.2E-10 68.5 13.9 133 78-213 267-414 (457)
184 1ihg_A Cyclophilin 40; ppiase 98.4 1.1E-05 3.7E-10 65.1 14.4 120 152-276 226-362 (370)
185 1ihg_A Cyclophilin 40; ppiase 98.4 9.8E-06 3.3E-10 65.3 13.3 122 117-241 226-362 (370)
186 3k9i_A BH0479 protein; putativ 98.3 2.7E-06 9.3E-11 56.2 7.9 86 162-248 3-89 (117)
187 2uy1_A Cleavage stimulation fa 98.3 0.0002 6.9E-09 60.0 20.4 204 16-248 196-412 (493)
188 3rkv_A Putative peptidylprolyl 98.3 1.7E-05 5.7E-10 55.7 12.0 100 78-178 10-126 (162)
189 2if4_A ATFKBP42; FKBP-like, al 98.3 8.1E-06 2.8E-10 65.0 10.9 95 115-213 180-292 (338)
190 1klx_A Cysteine rich protein B 98.2 0.00013 4.5E-09 49.7 15.0 112 57-179 8-127 (138)
191 2if4_A ATFKBP42; FKBP-like, al 98.2 7.2E-06 2.5E-10 65.3 9.8 131 79-214 179-328 (338)
192 2kat_A Uncharacterized protein 98.2 4.6E-05 1.6E-09 50.0 11.4 79 167-248 3-81 (115)
193 1dce_A Protein (RAB geranylger 98.2 0.00057 1.9E-08 58.3 20.5 171 94-271 44-242 (567)
194 2l6j_A TPR repeat-containing p 98.2 4E-06 1.4E-10 54.6 5.9 65 184-249 3-67 (111)
195 1dce_A Protein (RAB geranylger 98.2 0.0002 6.7E-09 61.1 17.6 169 61-235 46-241 (567)
196 3n71_A Histone lysine methyltr 98.2 7.3E-06 2.5E-10 68.3 8.6 127 7-143 317-464 (490)
197 2hr2_A Hypothetical protein; a 98.2 5.4E-05 1.8E-09 52.4 11.5 28 116-143 13-40 (159)
198 1klx_A Cysteine rich protein B 98.1 5.8E-05 2E-09 51.4 11.4 113 12-145 8-128 (138)
199 3n71_A Histone lysine methyltr 98.1 2.7E-05 9.4E-10 64.9 11.2 126 158-283 318-463 (490)
200 2hr2_A Hypothetical protein; a 98.0 0.00013 4.3E-09 50.5 11.5 64 79-142 11-85 (159)
201 2kat_A Uncharacterized protein 98.0 5.8E-05 2E-09 49.4 9.1 62 79-141 19-80 (115)
202 1na3_A Designed protein CTPR2; 97.9 0.00017 5.9E-09 44.6 10.3 61 81-142 11-71 (91)
203 2l6j_A TPR repeat-containing p 97.9 5.9E-05 2E-09 48.8 8.2 64 149-214 4-67 (111)
204 1na3_A Designed protein CTPR2; 97.9 0.00024 8.3E-09 43.9 10.5 60 188-248 12-71 (91)
205 1zu2_A Mitochondrial import re 97.9 0.00013 4.4E-09 50.4 9.3 110 9-122 12-132 (158)
206 1zu2_A Mitochondrial import re 97.9 6.7E-05 2.3E-09 51.8 7.7 97 163-264 16-133 (158)
207 3ly7_A Transcriptional activat 97.9 0.0016 5.5E-08 51.6 16.3 141 30-178 190-339 (372)
208 3ma5_A Tetratricopeptide repea 97.8 0.0002 7E-09 45.5 9.1 66 182-248 4-69 (100)
209 3ma5_A Tetratricopeptide repea 97.7 0.00015 5.2E-09 46.1 7.5 63 78-141 6-68 (100)
210 3ly7_A Transcriptional activat 97.7 0.0011 3.8E-08 52.5 13.1 76 182-261 274-349 (372)
211 2kc7_A BFR218_protein; tetratr 97.4 0.0015 5.1E-08 41.1 8.5 58 191-249 6-64 (99)
212 3qwp_A SET and MYND domain-con 97.2 0.0011 3.9E-08 54.3 7.7 92 6-107 294-399 (429)
213 3qww_A SET and MYND domain-con 97.2 0.0011 3.6E-08 54.5 7.5 26 187-212 384-409 (433)
214 3u64_A Protein TP_0956; tetrat 97.2 0.031 1.1E-06 42.6 14.6 106 166-282 180-296 (301)
215 3qww_A SET and MYND domain-con 97.1 0.00083 2.8E-08 55.1 6.4 86 12-107 311-410 (433)
216 3bee_A Putative YFRE protein; 97.1 0.0068 2.3E-07 37.8 9.1 68 76-144 3-73 (93)
217 3u64_A Protein TP_0956; tetrat 97.1 0.021 7.3E-07 43.5 13.1 97 57-155 176-283 (301)
218 3qwp_A SET and MYND domain-con 97.1 0.003 1E-07 51.8 9.3 93 121-213 294-399 (429)
219 3mkq_A Coatomer beta'-subunit; 97.0 0.025 8.6E-07 50.4 15.4 130 83-246 633-762 (814)
220 2kc7_A BFR218_protein; tetratr 97.0 0.0062 2.1E-07 38.1 8.5 56 157-214 8-64 (99)
221 1pc2_A Mitochondria fission pr 96.9 0.011 3.7E-07 40.4 9.2 85 57-143 11-100 (152)
222 3bee_A Putative YFRE protein; 96.9 0.027 9.4E-07 35.0 10.4 46 202-248 26-71 (93)
223 1pc2_A Mitochondria fission pr 96.9 0.027 9.3E-07 38.4 11.0 78 168-248 17-99 (152)
224 2v5f_A Prolyl 4-hydroxylase su 96.7 0.027 9.4E-07 35.8 9.7 25 81-105 7-31 (104)
225 3mkq_B Coatomer subunit alpha; 96.6 0.11 3.6E-06 36.5 12.7 44 126-175 17-60 (177)
226 2v5f_A Prolyl 4-hydroxylase su 96.6 0.052 1.8E-06 34.4 10.4 70 184-255 4-79 (104)
227 4h7y_A Dual specificity protei 96.5 0.073 2.5E-06 36.0 10.5 100 78-179 12-124 (161)
228 3mkq_A Coatomer beta'-subunit; 96.4 0.048 1.6E-06 48.6 12.5 45 160-211 663-707 (814)
229 1wy6_A Hypothetical protein ST 96.4 0.11 3.9E-06 34.4 14.5 66 186-252 92-157 (172)
230 4h7y_A Dual specificity protei 95.9 0.18 6.3E-06 34.1 10.3 101 113-216 12-125 (161)
231 1nzn_A CGI-135 protein, fissio 95.9 0.19 6.5E-06 33.0 10.3 86 57-143 14-103 (126)
232 3mkq_B Coatomer subunit alpha; 95.9 0.27 9.3E-06 34.5 13.8 51 156-213 12-62 (177)
233 1wy6_A Hypothetical protein ST 95.9 0.21 7.2E-06 33.2 12.6 138 127-287 20-157 (172)
234 1nzn_A CGI-135 protein, fissio 95.8 0.074 2.5E-06 34.9 7.9 78 168-248 20-102 (126)
235 4gns_B Protein CSD3, chitin bi 95.5 0.15 5.2E-06 44.7 11.2 130 81-212 250-398 (754)
236 2ff4_A Probable regulatory pro 95.5 0.23 8E-06 40.1 11.7 73 188-261 174-251 (388)
237 4gns_B Protein CSD3, chitin bi 95.0 0.23 7.8E-06 43.6 10.7 125 4-140 253-397 (754)
238 2ff4_A Probable regulatory pro 94.9 0.75 2.6E-05 37.1 12.9 70 117-188 174-248 (388)
239 4ady_A RPN2, 26S proteasome re 94.2 3.1 0.0001 37.7 16.6 257 9-283 384-657 (963)
240 1v54_E Cytochrome C oxidase po 93.8 0.72 2.5E-05 28.8 9.0 30 183-212 43-72 (109)
241 1v54_E Cytochrome C oxidase po 93.3 0.89 3E-05 28.4 9.1 45 98-142 29-73 (109)
242 3o48_A Mitochondria fission 1 92.8 1.4 4.7E-05 29.2 10.0 46 97-142 61-106 (134)
243 2y69_E Cytochrome C oxidase su 92.6 1.5 5.1E-05 29.0 9.0 32 182-213 85-116 (152)
244 4fhn_B Nucleoporin NUP120; pro 92.1 6.3 0.00021 36.9 15.4 148 84-239 817-990 (1139)
245 4ady_A RPN2, 26S proteasome re 91.9 7.1 0.00024 35.4 15.6 180 61-248 471-657 (963)
246 3o48_A Mitochondria fission 1 91.6 2 6.7E-05 28.4 9.3 72 182-255 37-111 (134)
247 2y69_E Cytochrome C oxidase su 91.5 2 7E-05 28.4 9.1 49 130-178 69-117 (152)
248 3lvg_A Clathrin heavy chain 1; 91.2 0.032 1.1E-06 45.9 -0.5 213 2-241 86-325 (624)
249 3lvg_A Clathrin heavy chain 1; 91.1 7.4E-05 2.5E-09 60.8 -15.5 238 2-278 57-314 (624)
250 4b4t_P 26S proteasome regulato 90.9 5.9 0.0002 32.6 15.2 190 92-282 29-245 (445)
251 4b4t_R RPN7, 26S proteasome re 90.9 5.2 0.00018 32.7 12.3 100 80-179 132-238 (429)
252 3txn_A 26S proteasome regulato 90.4 6 0.00021 31.9 15.3 166 80-247 20-208 (394)
253 4b4t_P 26S proteasome regulato 90.4 6.6 0.00023 32.3 20.4 191 57-248 29-246 (445)
254 4fhn_B Nucleoporin NUP120; pro 90.0 6.6 0.00023 36.8 13.4 125 148-274 841-990 (1139)
255 3ffl_A Anaphase-promoting comp 89.5 2.7 9.3E-05 29.0 7.9 30 259-288 126-155 (167)
256 3lpz_A GET4 (YOR164C homolog); 89.5 6.4 0.00022 30.8 17.1 99 61-163 76-181 (336)
257 1y8m_A FIS1; mitochondria, unk 89.3 3.6 0.00012 27.6 11.4 67 77-143 37-106 (144)
258 4b4t_R RPN7, 26S proteasome re 88.9 6.1 0.00021 32.3 11.2 98 116-213 133-236 (429)
259 2wpv_A GET4, UPF0363 protein Y 88.8 6.9 0.00024 30.3 16.2 78 61-138 74-158 (312)
260 3esl_A Checkpoint serine/threo 86.6 7.1 0.00024 28.0 9.3 54 165-218 95-148 (202)
261 3ffl_A Anaphase-promoting comp 85.5 5.4 0.00019 27.5 7.5 23 153-175 67-89 (167)
262 1y8m_A FIS1; mitochondria, unk 85.2 6.6 0.00023 26.3 11.5 67 182-248 36-105 (144)
263 3txn_A 26S proteasome regulato 83.5 16 0.00055 29.4 21.5 169 4-177 24-209 (394)
264 1zbp_A Hypothetical protein VP 81.9 14 0.0005 27.8 10.2 114 157-284 5-129 (273)
265 3esl_A Checkpoint serine/threo 80.7 13 0.00045 26.6 9.6 56 93-148 93-149 (202)
266 2wvi_A Mitotic checkpoint seri 79.6 8.6 0.00029 26.5 6.8 51 168-218 79-129 (164)
267 2d2s_A Exocyst complex compone 78.2 18 0.00062 26.7 10.3 22 6-27 25-46 (235)
268 4a1g_A Mitotic checkpoint seri 78.1 14 0.00046 25.2 9.2 51 168-218 84-134 (152)
269 4b4t_S RPN3, 26S proteasome re 76.4 12 0.0004 31.4 7.8 66 2-73 234-299 (523)
270 1wdy_A 2-5A-dependent ribonucl 76.4 1.9 6.4E-05 32.5 3.1 246 4-290 7-281 (285)
271 3eiq_C Programmed cell death p 76.0 28 0.00095 27.6 10.3 64 223-287 220-285 (358)
272 2uwj_G Type III export protein 75.1 12 0.00043 23.2 6.0 7 92-98 52-58 (115)
273 2p58_C Putative type III secre 74.1 13 0.00046 23.1 7.3 77 164-249 22-98 (116)
274 1k1a_A B-cell lymphoma 3-encod 73.1 16 0.00056 26.4 7.6 187 85-289 12-210 (241)
275 2d2s_A Exocyst complex compone 72.6 24 0.00082 26.0 8.1 92 154-248 23-119 (235)
276 4aez_C MAD3, mitotic spindle c 71.8 13 0.00044 27.2 6.2 52 167-218 132-183 (223)
277 2uwj_G Type III export protein 69.4 18 0.00061 22.6 7.5 76 165-249 22-97 (115)
278 2p58_C Putative type III secre 68.2 19 0.00065 22.5 8.2 77 129-214 22-98 (116)
279 4a1g_A Mitotic checkpoint seri 67.5 26 0.00089 23.8 9.5 53 96-148 82-135 (152)
280 3eu9_A Huntingtin-interacting 66.4 7 0.00024 28.3 4.3 56 226-285 180-237 (240)
281 2xig_A Ferric uptake regulatio 64.4 30 0.001 23.3 7.2 14 95-108 42-55 (150)
282 1ug3_A EIF4GI, eukaryotic prot 64.3 50 0.0017 25.9 10.0 95 3-107 15-113 (339)
283 2fe3_A Peroxide operon regulat 62.3 30 0.001 23.1 6.4 8 133-140 40-47 (145)
284 2zu6_B Programmed cell death p 62.0 53 0.0018 25.4 11.4 76 189-265 170-247 (307)
285 3ltm_A Alpha-REP4; protein eng 61.6 40 0.0014 23.8 17.8 171 77-268 31-201 (211)
286 2ion_A PDCD4, programmed cell 61.5 35 0.0012 23.1 6.9 25 152-176 12-36 (152)
287 2wpv_A GET4, UPF0363 protein Y 60.7 57 0.0019 25.3 19.6 139 89-247 63-215 (312)
288 2wvi_A Mitotic checkpoint seri 59.2 41 0.0014 23.2 9.3 54 96-149 77-131 (164)
289 3kea_A K1L; tropism, ANK repea 58.9 45 0.0015 25.1 7.7 173 67-257 47-225 (285)
290 1mzb_A Ferric uptake regulatio 58.8 32 0.0011 22.6 6.0 30 130-159 34-63 (136)
291 4gq2_M Nucleoporin NUP120; bet 58.2 1E+02 0.0034 28.4 10.7 66 183-249 838-926 (950)
292 2w57_A Ferric uptake regulatio 58.1 36 0.0012 22.9 6.2 34 130-163 33-66 (150)
293 3lpz_A GET4 (YOR164C homolog); 58.0 66 0.0023 25.2 23.1 84 89-172 65-159 (336)
294 3eyy_A Putative iron uptake re 57.9 29 0.00099 23.2 5.7 12 132-143 35-46 (145)
295 3eiq_C Programmed cell death p 57.2 71 0.0024 25.3 14.7 24 3-26 58-81 (358)
296 2zu6_B Programmed cell death p 56.4 67 0.0023 24.8 9.5 65 151-217 168-234 (307)
297 4aez_C MAD3, mitotic spindle c 55.7 57 0.002 23.8 8.2 52 96-147 131-183 (223)
298 2nsz_A Programmed cell death p 55.0 41 0.0014 22.0 8.3 23 153-175 11-33 (129)
299 1wdy_A 2-5A-dependent ribonucl 54.3 13 0.00043 27.8 3.9 85 191-279 151-240 (285)
300 2o03_A Probable zinc uptake re 53.6 42 0.0014 21.9 5.9 47 4-50 15-61 (131)
301 4ets_A Ferric uptake regulatio 53.5 45 0.0015 22.8 6.1 14 129-142 47-60 (162)
302 2b7e_A PRE-mRNA processing pro 53.4 12 0.00041 20.6 2.5 29 131-159 3-31 (59)
303 3hra_A Ankyrin repeat family p 51.2 16 0.00054 25.6 3.8 61 193-255 111-173 (201)
304 2r9g_A AAA ATPase, central reg 51.1 65 0.0022 23.0 11.2 17 13-29 28-44 (204)
305 4ets_A Ferric uptake regulatio 50.9 56 0.0019 22.3 7.1 61 69-130 23-85 (162)
306 2nsz_A Programmed cell death p 50.3 50 0.0017 21.5 8.9 67 3-78 11-77 (129)
307 2keb_A DNA polymerase subunit 50.0 43 0.0015 20.7 6.2 32 204-235 28-59 (101)
308 3jxi_A Vanilloid receptor-rela 49.3 27 0.00092 25.7 5.0 58 85-142 8-74 (260)
309 3mwm_A ZUR, putative metal upt 49.1 40 0.0014 22.3 5.2 47 4-50 18-64 (139)
310 2ion_A PDCD4, programmed cell 48.8 60 0.002 22.0 8.9 24 3-26 13-36 (152)
311 2xig_A Ferric uptake regulatio 47.9 60 0.0021 21.8 8.6 64 102-166 15-78 (150)
312 3mwm_A ZUR, putative metal upt 47.6 34 0.0012 22.6 4.7 42 121-162 20-61 (139)
313 3bge_A Predicted ATPase; struc 47.1 75 0.0026 22.7 9.3 30 12-41 20-49 (201)
314 1mzb_A Ferric uptake regulatio 47.0 58 0.002 21.3 6.8 61 69-130 8-69 (136)
315 2o03_A Probable zinc uptake re 46.7 57 0.002 21.2 5.8 44 85-128 16-59 (131)
316 3d5l_A Regulatory protein RECX 46.5 82 0.0028 22.9 10.5 49 96-145 93-141 (221)
317 3eyy_A Putative iron uptake re 46.2 63 0.0022 21.5 6.5 60 68-129 8-67 (145)
318 1ug3_A EIF4GI, eukaryotic prot 45.5 1.1E+02 0.0037 24.0 8.6 62 83-145 15-77 (339)
319 2w57_A Ferric uptake regulatio 44.8 68 0.0023 21.5 7.1 62 68-130 6-68 (150)
320 3kea_A K1L; tropism, ANK repea 44.8 74 0.0025 23.9 6.9 187 85-291 34-224 (285)
321 3ltj_A Alpharep-4; protein eng 44.6 77 0.0026 22.0 19.3 170 77-267 26-195 (201)
322 2ijq_A Hypothetical protein; s 43.9 76 0.0026 21.8 7.5 50 163-213 46-103 (161)
323 3kae_A CDC27, possible protein 43.7 81 0.0028 22.1 6.7 79 57-141 46-141 (242)
324 2fe3_A Peroxide operon regulat 43.6 70 0.0024 21.3 8.0 62 68-130 11-72 (145)
325 2f6m_A Suppressor protein STP2 43.5 43 0.0015 18.8 5.9 47 35-92 3-49 (65)
326 2p22_A Suppressor protein STP2 42.6 77 0.0026 22.1 5.8 47 34-91 111-157 (174)
327 1qsa_A Protein (soluble lytic 41.6 1.7E+02 0.0059 25.3 22.7 114 129-247 229-346 (618)
328 1zbp_A Hypothetical protein VP 41.5 1.1E+02 0.0039 23.1 15.3 114 122-249 5-129 (273)
329 3aji_A 26S proteasome non-ATPa 41.5 50 0.0017 23.5 5.3 12 91-102 15-26 (231)
330 2rg8_A Programmed cell death p 41.1 60 0.002 22.3 5.2 65 188-255 13-79 (165)
331 3ctd_A Putative ATPase, AAA fa 40.7 1E+02 0.0034 22.3 10.5 59 57-115 48-111 (213)
332 1qsa_A Protein (soluble lytic 40.7 1.8E+02 0.0061 25.2 22.7 116 163-283 228-347 (618)
333 2ijq_A Hypothetical protein; s 40.5 87 0.003 21.5 7.5 50 93-142 46-103 (161)
334 2fu4_A Ferric uptake regulatio 39.3 56 0.0019 18.9 7.4 58 70-128 8-66 (83)
335 3ltm_A Alpha-REP4; protein eng 39.2 98 0.0033 21.7 16.7 167 96-283 18-184 (211)
336 3kae_A CDC27, possible protein 38.9 99 0.0034 21.7 6.9 23 258-280 117-139 (242)
337 4fke_A Aminopeptidase N; zinc 38.4 2.3E+02 0.008 25.9 16.6 24 153-176 762-785 (909)
338 3eu9_A Huntingtin-interacting 38.2 21 0.00072 25.6 2.8 147 85-246 79-233 (240)
339 2etb_A Transient receptor pote 37.4 68 0.0023 23.4 5.5 57 85-142 5-71 (256)
340 3bu8_A Telomeric repeat-bindin 36.2 1.2E+02 0.0042 22.0 11.1 21 158-178 123-143 (235)
341 3pvs_A Replication-associated 34.7 1.9E+02 0.0065 23.7 12.4 29 77-107 192-220 (447)
342 2p22_A Suppressor protein STP2 34.6 1.1E+02 0.0037 21.4 5.5 51 220-271 111-161 (174)
343 2rg8_A Programmed cell death p 34.6 1.1E+02 0.0038 21.0 6.1 24 3-26 14-37 (165)
344 3l6a_A Eukaryotic translation 34.0 1.8E+02 0.006 23.1 15.5 78 3-89 16-93 (364)
345 3e3v_A Regulatory protein RECX 33.1 1.2E+02 0.0042 21.0 9.1 22 225-246 141-163 (177)
346 3c1d_A Protein ORAA, regulator 32.1 1.2E+02 0.0041 20.6 12.1 48 131-180 47-94 (159)
347 3hra_A Ankyrin repeat family p 31.4 69 0.0024 22.1 4.5 93 193-290 77-173 (201)
348 2r9g_A AAA ATPase, central reg 30.9 1.5E+02 0.005 21.3 10.7 37 91-128 26-62 (204)
349 3pvs_A Replication-associated 29.8 2.3E+02 0.0079 23.2 13.0 55 197-251 267-326 (447)
350 3rjo_A Endoplasmic reticulum a 29.7 2.2E+02 0.0076 23.0 17.9 155 118-282 201-371 (419)
351 3lxu_X Tripeptidyl-peptidase 2 29.6 3.2E+02 0.011 26.4 9.2 77 166-246 1266-1342(1354)
352 1oai_A Nuclear RNA export fact 29.6 66 0.0023 17.6 3.1 21 233-253 33-53 (59)
353 2cos_A Serine/threonine protei 29.4 58 0.002 17.5 2.7 19 263-281 28-48 (54)
354 3qil_A Clathrin heavy chain 1; 29.3 49 0.0017 21.4 2.9 45 85-132 38-82 (125)
355 2rpa_A Katanin P60 ATPase-cont 28.6 93 0.0032 18.3 4.6 24 225-248 17-40 (78)
356 4b4t_S RPN3, 26S proteasome re 28.4 2.7E+02 0.0092 23.5 12.5 65 79-143 231-299 (523)
357 3i5p_A Nucleoporin NUP170; hel 28.3 2.7E+02 0.0093 23.5 10.6 37 184-220 216-252 (525)
358 3bge_A Predicted ATPase; struc 27.9 1.7E+02 0.0057 20.9 9.1 34 91-124 19-52 (201)
359 3t5v_B Nuclear mRNA export pro 27.6 1.6E+02 0.0056 24.2 6.4 63 81-143 178-249 (455)
360 2keb_A DNA polymerase subunit 27.1 1.2E+02 0.0039 18.8 6.9 31 63-93 28-58 (101)
361 1bd8_A P19INK4D CDK4/6 inhibit 26.7 82 0.0028 20.6 4.1 13 266-278 141-153 (156)
362 2pnn_A Transient receptor pote 26.7 93 0.0032 22.9 4.7 57 85-141 16-81 (273)
363 1k1a_A B-cell lymphoma 3-encod 26.2 1.8E+02 0.006 20.6 7.2 123 156-290 13-144 (241)
364 3e3v_A Regulatory protein RECX 25.9 1.7E+02 0.0057 20.3 11.1 12 100-111 54-65 (177)
365 3rjo_A Endoplasmic reticulum a 25.8 2.6E+02 0.009 22.5 16.6 26 152-177 270-295 (419)
366 2etb_A Transient receptor pote 25.2 1.6E+02 0.0056 21.2 5.8 89 121-210 6-112 (256)
367 2qx5_A Nucleoporin NIC96; mRNA 25.1 3.5E+02 0.012 23.7 10.5 42 4-46 157-198 (661)
368 1q02_A Sequestosome 1; helical 24.9 86 0.0029 16.6 4.9 36 206-243 12-47 (52)
369 2rfa_A Transient receptor pote 24.8 1.8E+02 0.0061 20.5 5.9 84 192-280 125-219 (232)
370 3lxu_X Tripeptidyl-peptidase 2 24.4 4.7E+02 0.016 25.3 9.3 79 201-283 1265-1344(1354)
371 2qq8_A TBC1 domain family memb 23.8 1.1E+02 0.0038 23.8 4.7 41 173-214 217-257 (334)
372 2fv2_A RCD1 required for cell 23.6 1.3E+02 0.0043 22.7 4.6 48 199-246 187-235 (268)
373 4g8k_A 2-5A-dependent ribonucl 23.6 2.1E+02 0.0073 21.8 6.4 84 192-290 243-329 (337)
374 3ljn_A Hypothetical protein; a 23.5 1.2E+02 0.0041 23.5 5.0 27 85-111 87-113 (364)
375 1bpo_A Protein (clathrin); cla 23.4 3.2E+02 0.011 22.7 12.3 128 108-246 355-482 (494)
376 1dvk_A PRP18; PRE-mRNA splicin 22.9 1.9E+02 0.0066 20.0 5.0 41 206-246 67-108 (173)
377 4fke_A Aminopeptidase N; zinc 22.6 4.5E+02 0.015 24.1 17.4 158 118-283 690-863 (909)
378 3d5l_A Regulatory protein RECX 22.5 2.2E+02 0.0076 20.5 8.9 49 131-180 93-141 (221)
379 3ltj_A Alpharep-4; protein eng 21.8 2E+02 0.0069 19.8 16.5 152 113-282 27-178 (201)
380 3ctd_A Putative ATPase, AAA fa 21.6 2.3E+02 0.008 20.4 10.0 55 91-145 47-106 (213)
381 3t8k_A Uncharacterized protein 21.3 2.1E+02 0.0071 19.7 8.4 29 120-148 41-69 (186)
382 1rw2_A ATP-dependent DNA helic 21.2 78 0.0027 21.4 2.9 50 235-287 73-126 (152)
383 3jxi_A Vanilloid receptor-rela 20.9 1.7E+02 0.0057 21.2 5.1 159 121-288 9-211 (260)
384 2jp7_A MRNA export factor MEX6 20.7 34 0.0012 18.6 0.9 21 13-34 33-53 (57)
385 3us6_A Histidine-containing ph 20.1 2.1E+02 0.0071 19.3 12.0 41 3-46 11-51 (153)
386 3ygs_P Procaspase 9; apoptosis 20.0 1.6E+02 0.0054 17.9 6.2 38 199-240 51-88 (97)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.1e-36 Score=251.46 Aligned_cols=208 Identities=14% Similarity=0.164 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCC---------H
Q 022131 61 RNAEKVFDEMRVRGIEPDV-TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR---------I 130 (302)
Q Consensus 61 ~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~ 130 (302)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3456667777777765444 46889999999999999999999999999999999999999999997664 6
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022131 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210 (302)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (302)
++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|. .||..+|+.+|.+|++.|++++|.++|++
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI-QPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcc
Q 022131 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD 269 (302)
Q Consensus 211 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 269 (302)
|.+.|+.||..+|+.||.+|++.|+.++|.+++++|++.|..|+..||+.++..|...+
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999887643
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.4e-36 Score=250.04 Aligned_cols=195 Identities=19% Similarity=0.276 Sum_probs=185.4
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
++.+|.+|++.|++++|.++|++|.+.|++||..+||.+|.+|++.+....... .+.+++|.++|++|...|+.||..|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~-~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSP-NPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSC-CHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhh-cchHHHHHHHHHHHHHhCCCCCHHH
Confidence 678899999999999999999999999999999999999999998766543322 5788999999999999999999999
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (302)
|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 022131 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL 198 (302)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (302)
.|+.++|.+++++|.+.+. .|+..||+.++..|...
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~-~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVR-QVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTS-SBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHHhcC
Confidence 9999999999999999998 99999999999998864
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.2e-27 Score=203.59 Aligned_cols=268 Identities=7% Similarity=-0.091 Sum_probs=235.6
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
|+.++..|.+.|++++|.++|+++.+.+ +.+..+++.++.++.+ .|++++|..+++++.... +.+..+
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~-~~~~~~ 375 (597)
T 2xpi_A 308 LLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHE----------SGEKNKLYLISNDLVDRH-PEKAVT 375 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHH----------HTCHHHHHHHHHHHHHHC-TTSHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHhhC-cccHHH
Confidence 6788899999999999999999998764 3477789999999998 888899999999998663 457889
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (302)
++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+. .+..+|..++.+|.+
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH
Confidence 9999999999999999999999998864 34688999999999999999999999999988753 578899999999999
Q ss_pred cCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCC
Q 022131 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS----GLGPD--LDSYTMLIHGLCEKQK 235 (302)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~ 235 (302)
.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|+
T Consensus 454 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 999999999999998876 678899999999999999999999999998875 66777 7899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccCC
Q 022131 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286 (302)
Q Consensus 236 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 286 (302)
+++|.+.++++.+.+ +.+..+|..+..+|...|++++|.++++++.+...
T Consensus 532 ~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 532 YDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 999999999998754 44788999999999999999999999999887644
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=4.3e-28 Score=209.01 Aligned_cols=266 Identities=11% Similarity=-0.004 Sum_probs=240.4
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
|+.++..|.+.|++++|.++|+++.+. +++..+|+.++..+.+ .|++++|.++|+++.+.+ +.+..+
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~-~~~~~~ 341 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFV----------RSRFIDVLAITTKILEID-PYNLDV 341 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-TTCCTT
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHH----------hcCHHHHHHHHHHHHHcC-cccHHH
Confidence 344466778899999999999999876 6899999999999999 889999999999999875 347889
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (302)
++.++.++.+.|++++|..+++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+... .+..+|+.++.+|.+
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 419 (597)
T 2xpi_A 342 YPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAI 419 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 9999999999999999999999998764 45788999999999999999999999999988643 468899999999999
Q ss_pred cCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 022131 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241 (302)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 241 (302)
.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.+
T Consensus 420 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 420 EGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp HTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999886 6788999999999999999999999999998863 4578999999999999999999999
Q ss_pred HHHHHHHC----CCCCc--hhhHHHHHHHHhhcchHHHHHHHHHhccccC
Q 022131 242 YFVEMIEK----GLLPQ--KVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 242 ~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (302)
+|+++.+. +..|+ ..+|..+..+|.+.|++++|.++++++.+.+
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 99999876 66787 6899999999999999999999999988765
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=3.1e-22 Score=163.53 Aligned_cols=276 Identities=12% Similarity=0.029 Sum_probs=185.1
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhh------------------------H
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERF------------------------E 57 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~------------------------~ 57 (302)
|+.+...+.+.|++++|++.|+++.+.. +.+..+|..+..++...|++..+... .
T Consensus 70 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 70 YSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 5677778888888888888888887652 33455677777777775544432211 3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHH
Q 022131 58 KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELL 137 (302)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 137 (302)
|++++|.+.|+++.... +.+..+|..+...+.+.|++++|...|+++.+.+. .+...+..+...+...|++++|...+
T Consensus 149 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45566666666666542 22455666666666666666666666666666542 24556666666666666666666666
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 022131 138 GEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217 (302)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 217 (302)
++..+... .+..++..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++++.+. .+
T Consensus 227 ~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p 302 (388)
T 1w3b_A 227 LRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CP 302 (388)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CT
T ss_pred HHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-Cc
Confidence 66665432 346667777777777777777777777777764 455667777777777777777777777777765 34
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccC
Q 022131 218 PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 218 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (302)
.+..++..+...+...|++++|...++++.+. .+.+..++..+..++.+.|++++|...++++.+..
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 303 THADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 56777777777777778888888887777653 23345667777777778888888888877776543
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=5.4e-22 Score=162.10 Aligned_cols=267 Identities=12% Similarity=0.029 Sum_probs=185.9
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
+..+...+...|++++|...++...+. .+.+..+|..+...+.+ .|++++|+..|+++.... +.+..+
T Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~----------~g~~~~A~~~~~~al~~~-p~~~~~ 103 (388)
T 1w3b_A 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKE----------RGQLQEAIEHYRHALRLK-PDFIDG 103 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHcC-cchHHH
Confidence 345667788999999999999998876 35678899999999999 888899999999888763 335567
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (302)
|..+..++.+.|++++|.+.++++.+... .+...+..+...+...|++++|...|+++.+... .+..+|..+...+..
T Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 181 (388)
T 1w3b_A 104 YINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNA 181 (388)
T ss_dssp HHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 88888888888888888888877776542 2344555566666666666666666666655422 234455555555555
Q ss_pred cCCchHHHHHHHHHHhCCC--------------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022131 162 RKDANGAMKLYRQMKEDGL--------------------------------CVPNMHSYNILIGMFMALNRMDMVREIWN 209 (302)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (302)
.|++++|...|+++.+... .+.+..++..+...+...|++++|.+.++
T Consensus 182 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 261 (388)
T 1w3b_A 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555554443320 03345666777777777777777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhcccc
Q 022131 210 DVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 210 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (302)
++.+.+ +.+..+|..+..++.+.|++++|...++++.+. .+.+..++..+...+...|++++|...++++.+.
T Consensus 262 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 262 RAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 777652 235667777777777888888888888877764 2446677777777888888888888888777654
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=4.1e-21 Score=159.84 Aligned_cols=263 Identities=10% Similarity=0.014 Sum_probs=138.6
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
|..+...+.+.|++++|+.+|+.+.+. .+.+..++..+..++.. .|++++|+..|+++.+.+ +.+..+
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~al~~~-p~~~~~ 96 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLA----------MGKSKAALPDLTKVIQLK-MDFTAA 96 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 455666677777777777777777654 23356666777777776 555666666666666553 224555
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCH---HHHHHH------------HHHHhccCCHHHHHHHHHHHHHCCCC
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV---ATYSSV------------VKCLCSCGRIEDAEELLGEMVRNGVC 146 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~ 146 (302)
+..+..++.+.|++++|...|+++.+.... +. ..+..+ ...+.+.|++++|...|+++.+...
T Consensus 97 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~- 174 (450)
T 2y4t_A 97 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV- 174 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 666666666666666666666666554311 22 333333 2224455555555555555544321
Q ss_pred CChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH------------------------------
Q 022131 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM------------------------------ 196 (302)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------------ 196 (302)
.+..++..+..+|...|++++|...++++.+.. +.+..++..+...+.
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 252 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 252 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 234444444455555555555555555444432 334444444444444
Q ss_pred ----------------hcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCch
Q 022131 197 ----------------ALNRMDMVREIWNDVKGSGLGPD-----LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255 (302)
Q Consensus 197 ----------------~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 255 (302)
..|++++|...++++.+. .|+ ...+..+..++.+.|++++|...++++.+.. +.+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~ 329 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccH
Confidence 445555555555544442 222 2244445555555555555555555554421 2234
Q ss_pred hhHHHHHHHHhhcchHHHHHHHHHhccc
Q 022131 256 VTFETLYRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
.++..+..+|...|++++|...+++..+
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5555555555555555555555555544
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.1e-20 Score=157.23 Aligned_cols=256 Identities=10% Similarity=0.023 Sum_probs=185.6
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchh--------------------------
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSER-------------------------- 55 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~-------------------------- 55 (302)
|..+..++...|++++|+..|+++.+.+ +.+...+..+...+...|++..+..
T Consensus 63 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 141 (450)
T 2y4t_A 63 YYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSD 141 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Confidence 4556666777777777777777776653 2345566666666666333321110
Q ss_pred -------------hHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHH
Q 022131 56 -------------FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVK 122 (302)
Q Consensus 56 -------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 122 (302)
-.+++++|+..|+++.... +.+..++..+..++.+.|++++|...++++.+.. +.+..++..+..
T Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 219 (450)
T 2y4t_A 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIST 219 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 0234556666666666543 3356677778888888888888888888887764 346788888888
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH------------HHHHHccCCchHHHHHHHHHHhCCCCCCC----HH
Q 022131 123 CLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF------------FKEYRGRKDANGAMKLYRQMKEDGLCVPN----MH 186 (302)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 186 (302)
+|...|++++|...|+++.+... .+...+..+ ...+...|++++|...++++.+.. +.+ ..
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~ 296 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVR 296 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHH
Confidence 99999999999999998887532 344445444 778889999999999999998864 223 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCch-hhHHHHHHHH
Q 022131 187 SYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK-VTFETLYRGL 265 (302)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~ 265 (302)
.+..+..++.+.|++++|...++++.+. .+.+...|..+..+|...|++++|...++++.+ +.|+. ..+..+..+.
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQ 373 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHH
Confidence 7888899999999999999999998875 244789999999999999999999999999987 45654 4444444433
Q ss_pred h
Q 022131 266 I 266 (302)
Q Consensus 266 ~ 266 (302)
.
T Consensus 374 ~ 374 (450)
T 2y4t_A 374 R 374 (450)
T ss_dssp H
T ss_pred H
Confidence 3
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=6.5e-20 Score=146.14 Aligned_cols=268 Identities=8% Similarity=-0.091 Sum_probs=229.8
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
+..+...+...|++++|+++|+++.+.. +.+...+..+...+.. .+++++|...++++.+.. +.+...
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~----------~~~~~~A~~~~~~~~~~~-~~~~~~ 92 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVE----------LNKANELFYLSHKLVDLY-PSNPVS 92 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHH----------HTCHHHHHHHHHHHHHHC-TTSTHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHH----------hhhHHHHHHHHHHHHHhC-cCCHHH
Confidence 3456778888999999999999998763 3455677777888888 888999999999999874 346788
Q ss_pred HHHHHHHHHhcC-CchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 022131 82 FSIVLHVYSRAH-QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160 (302)
Q Consensus 82 ~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (302)
+..+...+...| ++++|...++++.+.. +.+...+..+...+...|++++|...+++..+... .+...+..+...+.
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 999999999999 9999999999999875 33677899999999999999999999999998743 35677888999999
Q ss_pred ccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHH
Q 022131 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG--------LGPDLDSYTMLIHGLCE 232 (302)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~ 232 (302)
..|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. .+.+..++..+..++..
T Consensus 171 ~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 9999999999999999886 6778999999999999999999999999987631 13446789999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccCC
Q 022131 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286 (302)
Q Consensus 233 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 286 (302)
.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+...
T Consensus 249 ~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred hcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 999999999999998752 33567888999999999999999999999877553
No 10
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=1.2e-20 Score=152.85 Aligned_cols=264 Identities=10% Similarity=-0.000 Sum_probs=216.4
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
|..+...+.+.|++++|++.|+++.+.. +.+..+|..+...+.. .|++++|+..|+++.+.. +.+..+
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~----------~g~~~~A~~~~~~al~~~-p~~~~~ 135 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAE----------NENEQAAIVALQRCLELQ-PNNLKA 135 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 5567788999999999999999998863 4477889999999999 888999999999999874 346889
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCC---------cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CChhh
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFMKEKGIC---------PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC-PSAET 151 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 151 (302)
+..+..++...|++++|...++++.+.... .....+..+...+.+.|++++|...++++.+.... ++..+
T Consensus 136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 215 (365)
T 4eqf_A 136 LMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHH
Confidence 999999999999999999999999876311 01223344588899999999999999999987432 16889
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 022131 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231 (302)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 231 (302)
+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+. .+.+..++..+..+|.
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-QPGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHH
Confidence 9999999999999999999999999886 678899999999999999999999999999886 2346889999999999
Q ss_pred HcCCHHHHHHHHHHHHHCC---CC--------CchhhHHHHHHHHhhcchHHHHHHHHHh
Q 022131 232 EKQKWKEACQYFVEMIEKG---LL--------PQKVTFETLYRGLIQSDMLRTWRRLKKK 280 (302)
Q Consensus 232 ~~g~~~~a~~~~~~~~~~~---~~--------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (302)
..|++++|...|+++.+.. .. .+...|..+..++...|+.+.+..+.++
T Consensus 293 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999997641 01 1367889999999999999999988766
No 11
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=3.8e-20 Score=149.90 Aligned_cols=262 Identities=9% Similarity=-0.017 Sum_probs=215.3
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
|..+...+.+.|++++|...|+++.+.. +.+...+..+..++.. .|++++|...|+++.+.+ +.+..+
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~al~~~-~~~~~~ 134 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAE----------NEQELLAISALRRCLELK-PDNQTA 134 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH----------CcCHHHHHHHHHHHHhcC-CCCHHH
Confidence 4567778889999999999999998873 4467788888888888 788899999999998875 447888
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHH---------------HHHHHhccCCHHHHHHHHHHHHHCCCC
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS---------------VVKCLCSCGRIEDAEELLGEMVRNGVC 146 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~ 146 (302)
+..+...+...|++++|...++++.+.... +...+.. .+..+...|++++|...++++.+....
T Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 213 (368)
T 1fch_A 135 LMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT 213 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999999887532 2222221 233344889999999999999886432
Q ss_pred C-ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 022131 147 P-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTM 225 (302)
Q Consensus 147 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (302)
. +..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..
T Consensus 214 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~ 290 (368)
T 1fch_A 214 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL-QPGYIRSRYN 290 (368)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHH
Confidence 1 57888999999999999999999999998875 567889999999999999999999999998875 2456788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCc------------hhhHHHHHHHHhhcchHHHHHHHHHhc
Q 022131 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQ------------KVTFETLYRGLIQSDMLRTWRRLKKKL 281 (302)
Q Consensus 226 li~~~~~~g~~~~a~~~~~~~~~~~~~p~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 281 (302)
+..++...|++++|...++++.+. .|+ ..+|..+..++...|+.++|..++++-
T Consensus 291 l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 291 LGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 999999999999999999998764 222 578899999999999999999987753
No 12
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=1e-19 Score=144.89 Aligned_cols=265 Identities=10% Similarity=-0.021 Sum_probs=220.4
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
|..+...+...|++++|..+|+++.+.. +.+...+..+...+.. .+++++|...|+++.+.. +.+..+
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~----------~~~~~~A~~~~~~a~~~~-~~~~~~ 91 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAE----------NEKDGLAIIALNHARMLD-PKDIAV 91 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhcC-cCCHHH
Confidence 3456678889999999999999998763 3467788888888888 888999999999999874 447889
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHH--------------HH-HHhccCCHHHHHHHHHHHHHCCCC
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV--------------VK-CLCSCGRIEDAEELLGEMVRNGVC 146 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~ 146 (302)
+..+...+...|++++|.+.++++.+.... +...+..+ .. .+...|++++|...++++.+...
T Consensus 92 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~- 169 (327)
T 3cv0_A 92 HAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP- 169 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-
Confidence 999999999999999999999999887422 33333333 22 37788999999999999988743
Q ss_pred CChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 022131 147 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226 (302)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 226 (302)
.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 246 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNM 246 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 478899999999999999999999999999885 6678899999999999999999999999988763 4468889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-----------chhhHHHHHHHHhhcchHHHHHHHHHhccc
Q 022131 227 IHGLCEKQKWKEACQYFVEMIEKGLLP-----------QKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 227 i~~~~~~g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
..++...|++++|...++++.+..-.. +..++..+..++...|+.++|..++++..+
T Consensus 247 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 247 AVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999998742111 367888899999999999999999876543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=4.4e-18 Score=137.00 Aligned_cols=265 Identities=9% Similarity=-0.011 Sum_probs=133.6
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 022131 3 TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSF 82 (302)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (302)
..+...+...|++++|+..|+.+.+.. +.+...+..+...+.. .|++++|...|+++.+.. +.+...+
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~----------~~~~~~A~~~~~~~~~~~-~~~~~~~ 74 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLA----------MGKSKAALPDLTKVIALK-MDFTAAR 74 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH----------ccCHHHHHHHHHHHHHhC-CCcchHH
Confidence 344555666666666666666665542 2345556666666666 555556666665555542 2244555
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhcCCC--cCHHHHHHH------------HHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 022131 83 SIVLHVYSRAHQPQLSLDKLNFMKEKGIC--PTVATYSSV------------VKCLCSCGRIEDAEELLGEMVRNGVCPS 148 (302)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 148 (302)
..+...+...|++++|...++++.+.... .+...+..+ ...+...|++++|...++++.+... .+
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~ 153 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WD 153 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-Cc
Confidence 55555555556666666555555554210 122222222 3444455555555555555544322 23
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-------------------------------
Q 022131 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA------------------------------- 197 (302)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------------- 197 (302)
...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLK--SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 4444445555555555555555555554443 3344444444444444
Q ss_pred ---------------cCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhH
Q 022131 198 ---------------LNRMDMVREIWNDVKGSGLGPDL----DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258 (302)
Q Consensus 198 ---------------~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 258 (302)
.|++++|...++++.+... .+. ..+..+..++...|++++|...+++..+. .+.+..++
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~ 309 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHH
Confidence 4555555555544444311 111 12333445555556666666666655553 12244555
Q ss_pred HHHHHHHhhcchHHHHHHHHHhcccc
Q 022131 259 ETLYRGLIQSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 259 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (302)
..+...+...|++++|...+++..+.
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555666666666666666655543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=7.1e-18 Score=135.79 Aligned_cols=248 Identities=10% Similarity=0.024 Sum_probs=158.8
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCC------
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI------ 75 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------ 75 (302)
|..+...+...|++++|...++++.+.. +-+...+..+...+.. .|++++|...|+++.+...
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~----------~~~~~~A~~~~~~~~~~~~~~~~~~ 108 (359)
T 3ieg_A 40 YYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLK----------QGKLDEAEDDFKKVLKSNPSEQEEK 108 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHTSCCCHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHH----------cCChHHHHHHHHHHHhcCCcccChH
Confidence 4556677888888888888888887752 3355677777777777 5555566666655554421
Q ss_pred ------------------------------------------CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcC
Q 022131 76 ------------------------------------------EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPT 113 (302)
Q Consensus 76 ------------------------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 113 (302)
+.+...+..+...+...|++++|...++++.+.. +.+
T Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 187 (359)
T 3ieg_A 109 EAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDN 187 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 1233444444455555555555555555555443 224
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHH------------HHHHHHccCCchHHHHHHHHHHhCCCC
Q 022131 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC------------FFKEYRGRKDANGAMKLYRQMKEDGLC 181 (302)
Q Consensus 114 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~ 181 (302)
..++..+...+...|++++|...+++..+... .+...+.. +...+...|++++|...++++.+..
T Consensus 188 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-- 264 (359)
T 3ieg_A 188 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-- 264 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 45555555555555555555555555554421 22222221 1444666777777777777776654
Q ss_pred CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCc-hh
Q 022131 182 VPNM----HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ-KV 256 (302)
Q Consensus 182 ~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~ 256 (302)
+.+. ..+..+..++...|++++|...+++..+. .+.+...+..+..++...|++++|...|+++.+. .|+ ..
T Consensus 265 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~ 341 (359)
T 3ieg_A 265 PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQ 341 (359)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHH
T ss_pred CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChH
Confidence 2333 22445778899999999999999999886 3447889999999999999999999999999874 455 44
Q ss_pred hHHHHHHHHhh
Q 022131 257 TFETLYRGLIQ 267 (302)
Q Consensus 257 ~~~~l~~~~~~ 267 (302)
.+..+..+...
T Consensus 342 ~~~~l~~~~~~ 352 (359)
T 3ieg_A 342 IREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 15
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=1.8e-21 Score=168.54 Aligned_cols=148 Identities=13% Similarity=0.126 Sum_probs=123.1
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHHh---CCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 022131 1 MYTSLIYGWCKINRIDMAERFLGEMIE---RGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP 77 (302)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 77 (302)
|||+||.+||+.|++++|.++|++|.+ .|+.||+.|||+||.+|++ .|++++|.++|++|.+.|+.|
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck----------~G~~~eA~~Lf~eM~~~G~~P 198 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR----------QGAFKELVYVLFMVKDAGLTP 198 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh----------CCCHHHHHHHHHHHHHcCCCC
Confidence 599999999999999999999988764 4789999999999999999 889999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCc-hhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC------hh
Q 022131 78 DVTSFSIVLHVYSRAHQP-QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS------AE 150 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~ 150 (302)
|..|||++|.++++.|+. +.|.++|++|.+.|+.||..+|+.++..+.+. .+++..+++ ..+..|+ ..
T Consensus 199 DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~ 273 (1134)
T 3spa_A 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVN 273 (1134)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCC
T ss_pred cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCccccc
Confidence 999999999999999985 78999999999999999999999988765543 334444444 2234443 44
Q ss_pred hHHHHHHHHHccC
Q 022131 151 TYNCFFKEYRGRK 163 (302)
Q Consensus 151 ~~~~l~~~~~~~~ 163 (302)
+...|.+.|.+.+
T Consensus 274 t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 274 TSKLLRDVYAKDG 286 (1134)
T ss_dssp CCTTTHHHHCCCS
T ss_pred chHHHHHHHccCC
Confidence 5566667776655
No 16
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.3e-18 Score=147.11 Aligned_cols=94 Identities=9% Similarity=-0.016 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 022131 3 TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSF 82 (302)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (302)
......+.+.|++++|+..|+++...+ |+...|..+..++.. .|++++|+..|+++.+.+ +.+..++
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~----------~g~~~~A~~~~~~al~~~-p~~~~~~ 76 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVS----------VGDLKKVVEMSTKALELK-PDYSKVL 76 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHH----------HhhHHHHHHHHHHHhccC-hHHHHHH
Confidence 344566777888888888888887763 677778888888877 777777777777777664 3355677
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhcC
Q 022131 83 SIVLHVYSRAHQPQLSLDKLNFMKEKG 109 (302)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~~~~~ 109 (302)
..+..++...|++++|...|+++.+.+
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 777777777777777777777665543
No 17
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=163.83 Aligned_cols=128 Identities=17% Similarity=0.162 Sum_probs=100.0
Q ss_pred ChhhHHHHHHHHHccCCchHHHHHHHHHHh---CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 022131 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKE---DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224 (302)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (302)
...||+++|.+|++.|+.++|.++|.+|.+ .|. .||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~-~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK-LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT-TCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC-CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345788888888888888888888877654 344 7888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHH
Q 022131 225 MLIHGLCEKQK-WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276 (302)
Q Consensus 225 ~li~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 276 (302)
++|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.+..+.+-++.+.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrk 257 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGG
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHH
Confidence 88888888887 46788888888888888888888888765555544444333
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=1.6e-18 Score=140.41 Aligned_cols=262 Identities=11% Similarity=-0.049 Sum_probs=204.9
Q ss_pred HHHhcCCcchHHH-HHHHHHhCCC-cc--cHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 022131 8 GWCKINRIDMAER-FLGEMIERGV-EP--NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83 (302)
Q Consensus 8 ~~~~~g~~~~a~~-~~~~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (302)
++...|++++|.+ .+++...... .| +...+..+...+.. .|++++|...|+++.+.. +.+..++.
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~A~~~~~~al~~~-p~~~~~~~ 102 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ----------EGDLPNAVLLFEAAVQQD-PKHMEAWQ 102 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH----------TTCHHHHHHHHHHHHHSC-TTCHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 3445677888887 7776554311 11 34567788888888 888999999999999875 44788999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHH---------
Q 022131 84 IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC--------- 154 (302)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------- 154 (302)
.+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.... +...+..
T Consensus 103 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 180 (368)
T 1fch_A 103 YLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAG 180 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhc
Confidence 99999999999999999999999876 347889999999999999999999999999987432 2222221
Q ss_pred ------HHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 022131 155 ------FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228 (302)
Q Consensus 155 ------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 228 (302)
.+..+...|++++|...++++.+.....++..++..+...+...|++++|...++++... .+.+...+..+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~ 259 (368)
T 1fch_A 181 LGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPNDYLLWNKLGA 259 (368)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHHHHH
Confidence 233444889999999999999988521116889999999999999999999999998886 3446789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhcccc
Q 022131 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 229 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (302)
++...|++++|...++++.+.. +.+...+..+..++...|++++|...+++..+.
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 260 TLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998752 345678899999999999999999999987664
No 19
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=3.1e-18 Score=134.02 Aligned_cols=254 Identities=9% Similarity=0.022 Sum_probs=196.9
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCcccH--HHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 022131 6 IYGWCKINRIDMAERFLGEMIERGVEPNV--VTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFS 83 (302)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (302)
|.-....|+++.|+..++..... .|+. .....+.++|.. .|+++.|+..++. .-+|+..++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~----------~g~~~~al~~~~~----~~~~~~~a~~ 69 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLA----------QRKYGVVLDEIKP----SSAPELQAVR 69 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHH----------TTCHHHHHHHSCT----TSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHH----------CCCHHHHHHHhcc----cCChhHHHHH
Confidence 34556789999999988776544 3333 455666778888 7778888876644 2356778888
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 022131 84 IVLHVYSRAHQPQLSLDKLNFMKEKGICP-TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR 162 (302)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (302)
.+...+...++.++|++.++++...+..| +...+..+...+...|++++|+..+++ +.+...+..+...+.+.
T Consensus 70 ~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~ 143 (291)
T 3mkr_A 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKL 143 (291)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHC
Confidence 89999999999999999999998776434 566677777889999999999999987 46788899999999999
Q ss_pred CCchHHHHHHHHHHhCCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 022131 163 KDANGAMKLYRQMKEDGLCVPNMHSY---NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239 (302)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 239 (302)
|++++|...++++.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|
T Consensus 144 g~~~~A~~~l~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA 219 (291)
T 3mkr_A 144 DRLDLARKELKKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAA 219 (291)
T ss_dssp TCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999998874 442211 12234444568999999999999887 466888999999999999999999
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHH-HHHHHHhccccCC
Q 022131 240 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT-WRRLKKKLDEESI 286 (302)
Q Consensus 240 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~ 286 (302)
...+++..+.. +-+..++..++..+...|+.++ +.++++++.+...
T Consensus 220 ~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 220 EGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 99999988752 3366788888888999998865 6788887765543
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=2.7e-18 Score=138.96 Aligned_cols=239 Identities=11% Similarity=-0.028 Sum_probs=195.6
Q ss_pred cHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCc
Q 022131 33 NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP 112 (302)
Q Consensus 33 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (302)
+...+..+...+.+ .|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.
T Consensus 64 ~~~~~~~~~~~~~~----------~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 131 (365)
T 4eqf_A 64 DWPGAFEEGLKRLK----------EGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PN 131 (365)
T ss_dssp TCTTHHHHHHHHHH----------HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred chhHHHHHHHHHHH----------CCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 34557888888888 889999999999999875 4478899999999999999999999999999875 34
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---------ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCC
Q 022131 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP---------SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP 183 (302)
Q Consensus 113 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 183 (302)
+..++..+..+|...|++++|...++++.+..... ....+..+...+...|++++|...++++.+.....+
T Consensus 132 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 211 (365)
T 4eqf_A 132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI 211 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC
T ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc
Confidence 68899999999999999999999999998753210 122334457889999999999999999998852112
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHH
Q 022131 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 263 (302)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 263 (302)
+..++..+...+...|++++|...++++.+. .+.+..+|..+..+|...|++++|...|+++.+.. +.+..++..+..
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 289 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGI 289 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHH
Confidence 7889999999999999999999999999886 34578899999999999999999999999998752 334778899999
Q ss_pred HHhhcchHHHHHHHHHhccccC
Q 022131 264 GLIQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 264 ~~~~~g~~~~a~~~~~~~~~~~ 285 (302)
++...|++++|...+++..+..
T Consensus 290 ~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 290 SCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999876643
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=9.9e-18 Score=133.49 Aligned_cols=241 Identities=8% Similarity=-0.014 Sum_probs=205.9
Q ss_pred CcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 022131 30 VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG 109 (302)
Q Consensus 30 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 109 (302)
.+.+...+..+...+.. .|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+..
T Consensus 18 ~~~~~~~~~~~a~~~~~----------~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 86 (330)
T 3hym_B 18 LQENLDVVVSLAERHYY----------NCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY 86 (330)
T ss_dssp --CCCTTHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred chhhHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 45567778888888888 888999999999998874 3356677778889999999999999999998875
Q ss_pred CCcCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHH
Q 022131 110 ICPTVATYSSVVKCLCSCG-RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSY 188 (302)
Q Consensus 110 ~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (302)
+.+...+..+...+...| ++++|...|++..+... .+...|..+...+...|++++|...++++.+.. +.+...+
T Consensus 87 -~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~ 162 (330)
T 3hym_B 87 -PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPM 162 (330)
T ss_dssp -TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHH
T ss_pred -cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHH
Confidence 336788999999999999 99999999999998753 467889999999999999999999999999886 5566778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCchhhHHH
Q 022131 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG--------LLPQKVTFET 260 (302)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~p~~~~~~~ 260 (302)
..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|...++++.+.. ...+..++..
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALSI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHH
Confidence 88999999999999999999999986 34578899999999999999999999999997641 1334568889
Q ss_pred HHHHHhhcchHHHHHHHHHhccccCC
Q 022131 261 LYRGLIQSDMLRTWRRLKKKLDEESI 286 (302)
Q Consensus 261 l~~~~~~~g~~~~a~~~~~~~~~~~~ 286 (302)
+..++...|++++|...+++..+...
T Consensus 242 la~~~~~~g~~~~A~~~~~~a~~~~~ 267 (330)
T 3hym_B 242 LGHVCRKLKKYAEALDYHRQALVLIP 267 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhCc
Confidence 99999999999999999999876543
No 22
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.82 E-value=8.2e-18 Score=142.14 Aligned_cols=222 Identities=13% Similarity=0.048 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHh-----cCC--------CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q 022131 58 KTIRNAEKVFDEMRV-----RGI--------EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124 (302)
Q Consensus 58 ~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 124 (302)
+++++|...|+++.. ... +.+..++..+...+...|++++|...++++.+.... ..++..+...+
T Consensus 203 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~ 280 (514)
T 2gw1_A 203 ESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIM 280 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHH
Confidence 556666666666655 210 112345666666677777777777777777665422 56666677777
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 022131 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204 (302)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (302)
...|++++|...++++.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 281 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 281 ADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHH
T ss_pred HHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777766532 355666777777777777777777777777664 44566677777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCc----hhhHHHHHHHHhh---cchHHHHHH
Q 022131 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL-LPQ----KVTFETLYRGLIQ---SDMLRTWRR 276 (302)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~a~~ 276 (302)
...++++.+. .+.+...+..+...+...|++++|...++++.+..- .++ ...+..+...+.. .|++++|..
T Consensus 358 ~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~ 436 (514)
T 2gw1_A 358 ETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436 (514)
T ss_dssp HHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred HHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 7777777664 233556777777777777777777777777765310 111 2266777777777 777777777
Q ss_pred HHHhccccC
Q 022131 277 LKKKLDEES 285 (302)
Q Consensus 277 ~~~~~~~~~ 285 (302)
.+++..+..
T Consensus 437 ~~~~a~~~~ 445 (514)
T 2gw1_A 437 LLEKASKLD 445 (514)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 777766543
No 23
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=3.4e-17 Score=139.18 Aligned_cols=264 Identities=11% Similarity=0.033 Sum_probs=212.7
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
|..+...+.+.|++++|++.|+++.... +.+...+..+..++.. .|++++|++.|+++.+.+ +.+..+
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~----------~g~~~~A~~~~~~al~~~-p~~~~~ 95 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYIS----------TGDLEKVIEFTTKALEIK-PDHSKA 95 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhcC-CchHHH
Confidence 4456678889999999999999998763 4467888888888888 888899999999988875 346778
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHH--------------------------------------------------------
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFM-------------------------------------------------------- 105 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~-------------------------------------------------------- 105 (302)
+..+..++...|++++|...|+.+
T Consensus 96 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 96 LLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 888888888888888888766422
Q ss_pred -----------------------------------------------------HhcCCCcC--------HHHHHHHHHHH
Q 022131 106 -----------------------------------------------------KEKGICPT--------VATYSSVVKCL 124 (302)
Q Consensus 106 -----------------------------------------------------~~~~~~~~--------~~~~~~ll~~~ 124 (302)
.+. .|+ ..++..+...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHH
Confidence 111 111 22455566677
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 022131 125 CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204 (302)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (302)
...|++++|...+++..+.. |+...+..+...+...|++++|...+.++.+.. +.+..++..+...+...|++++|
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHH
Confidence 78899999999999998864 557888889999999999999999999998876 56788899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhcccc
Q 022131 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (302)
...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999988763 3456788899999999999999999999998752 335668888899999999999999999987654
Q ss_pred C
Q 022131 285 S 285 (302)
Q Consensus 285 ~ 285 (302)
.
T Consensus 408 ~ 408 (537)
T 3fp2_A 408 E 408 (537)
T ss_dssp H
T ss_pred C
Confidence 3
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=4.5e-17 Score=127.39 Aligned_cols=245 Identities=11% Similarity=0.107 Sum_probs=198.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCC-CHHHH
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEP-DVTSF 82 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 82 (302)
.+..+|...|+++.|+..++. .-+|+..++..+...+.. .++.++|++.++++...+..| +...+
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~----------~~~~~~A~~~l~~ll~~~~~P~~~~~~ 104 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLAS----------HSRRDAIVAELDREMSRSVDVTNTTFL 104 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHC----------STTHHHHHHHHHHHHHSCCCCSCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcC----------CCcHHHHHHHHHHHHhcccCCCCHHHH
Confidence 357889999999999986654 246677888888888888 778899999999998876444 56677
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhH---HHHHHHH
Q 022131 83 SIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETY---NCFFKEY 159 (302)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~ 159 (302)
..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...++++.+.. |+.... ..++..+
T Consensus 105 ~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~ 176 (291)
T 3mkr_A 105 LMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLA 176 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHH
Confidence 7788999999999999999987 4578899999999999999999999999999874 443211 2233445
Q ss_pred HccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-
Q 022131 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE- 238 (302)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~- 238 (302)
...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++.... -+-+..++..++..+...|+.++
T Consensus 177 ~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-~p~~~~~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-DSGHPETLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred hCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCCHHH
Confidence 56699999999999999985 788999999999999999999999999998886 24578899999999999999876
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHH
Q 022131 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278 (302)
Q Consensus 239 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 278 (302)
+.++++++.+ +.|+.... .+...+.+.++++..-|
T Consensus 254 a~~~~~~~~~--~~P~~~~~---~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 254 TNRYLSQLKD--AHRSHPFI---KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHH--HCTTCHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCChHH---HHHHHHHHHHHHHHHHc
Confidence 6789999887 45665433 34466777777765543
No 25
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.81 E-value=1.2e-16 Score=135.73 Aligned_cols=222 Identities=11% Similarity=0.008 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCH
Q 022131 58 KTIRNAEKVFDEMRVRGIEPD-------VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130 (302)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 130 (302)
+++++|..+|+++.+.... + ..++..+...+...|++++|...++++.+.. |+..++..+...+...|++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCH
Confidence 3677778888887765322 2 2356777788889999999999999999874 5578899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022131 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWND 210 (302)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (302)
++|...++++.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++
T Consensus 293 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 369 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNE 369 (537)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999988753 468889999999999999999999999999876 55678899999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCchhhHHHHHHHHhhc----------chHHHHH
Q 022131 211 VKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL-----LPQKVTFETLYRGLIQS----------DMLRTWR 275 (302)
Q Consensus 211 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~----------g~~~~a~ 275 (302)
+.+. .+.+...+..+...+...|++++|...++++.+..- ......+......+... |++++|.
T Consensus 370 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~ 448 (537)
T 3fp2_A 370 TKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI 448 (537)
T ss_dssp HHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHH
T ss_pred HHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHH
Confidence 9886 345677899999999999999999999999876421 11112234445667777 9999999
Q ss_pred HHHHhccccCC
Q 022131 276 RLKKKLDEESI 286 (302)
Q Consensus 276 ~~~~~~~~~~~ 286 (302)
..+++..+...
T Consensus 449 ~~~~~a~~~~p 459 (537)
T 3fp2_A 449 KLLTKACELDP 459 (537)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHhCC
Confidence 99999877543
No 26
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=6.7e-17 Score=124.07 Aligned_cols=223 Identities=14% Similarity=0.067 Sum_probs=191.0
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCC--CC-
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIE--PD- 78 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~- 78 (302)
|..+...+...|++++|...|++..+.. .+...+..+..++.. .+++++|...+++..+.... |+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~----------~~~~~~A~~~~~~a~~~~~~~~~~~ 75 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYE----------KGEYETAISTLNDAVEQGREMRADY 75 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHH----------cccHHHHHHHHHHHHHhCcccccch
Confidence 5667888999999999999999999886 788899999999999 88889999999998875311 12
Q ss_pred ---HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 022131 79 ---VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155 (302)
Q Consensus 79 ---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (302)
..++..+...+...|++++|...+++..+.. |+. ..+.+.|++++|...++++..... .+...+..+
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 145 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLE 145 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHH
Confidence 5788999999999999999999999998864 443 345666889999999999988643 356788889
Q ss_pred HHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 022131 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235 (302)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 235 (302)
...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 146 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 146 GKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999876 6678899999999999999999999999998863 4468889999999999999
Q ss_pred HHHHHHHHHHHHHC
Q 022131 236 WKEACQYFVEMIEK 249 (302)
Q Consensus 236 ~~~a~~~~~~~~~~ 249 (302)
+++|...+++..+.
T Consensus 223 ~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 223 YASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 27
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.79 E-value=6.3e-17 Score=121.18 Aligned_cols=201 Identities=8% Similarity=-0.065 Sum_probs=164.5
Q ss_pred CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 022131 76 EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF 155 (302)
Q Consensus 76 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (302)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+..+ .+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 5677888999999999999999999999999876 34788899999999999999999999999998753 467888999
Q ss_pred HHHHHcc-----------CCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 022131 156 FKEYRGR-----------KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224 (302)
Q Consensus 156 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (302)
..++... |++++|...+++..+.. +.+...+..+..++...|++++|...|++..+.. .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 9999999 99999999999999886 6678899999999999999999999999999876 7889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccc
Q 022131 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 225 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
.+..++...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++...
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999998752 33567788889999999999999999887643
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=1.2e-16 Score=126.92 Aligned_cols=237 Identities=8% Similarity=-0.060 Sum_probs=197.2
Q ss_pred cHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCc
Q 022131 33 NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP 112 (302)
Q Consensus 33 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (302)
+...+..+...+.. .+++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.
T Consensus 20 ~~~~~~~~a~~~~~----------~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~ 87 (327)
T 3cv0_A 20 YHENPMEEGLSMLK----------LANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PK 87 (327)
T ss_dssp GSSCHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred hhHHHHHHHHHHHH----------hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cC
Confidence 44456667777777 788999999999998874 3477889999999999999999999999998875 34
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH--------------HH-HHHccCCchHHHHHHHHHHh
Q 022131 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCF--------------FK-EYRGRKDANGAMKLYRQMKE 177 (302)
Q Consensus 113 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~ 177 (302)
+..++..+...+...|++++|...++++.+... .+...+..+ .. .+...|++++|...++++.+
T Consensus 88 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 166 (327)
T 3cv0_A 88 DIAVHAALAVSHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE 166 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh
Confidence 788899999999999999999999999998643 233333333 22 37788899999999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhh
Q 022131 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257 (302)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 257 (302)
.. +.+...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|...++++.+.. +.+..+
T Consensus 167 ~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 242 (327)
T 3cv0_A 167 MN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRV 242 (327)
T ss_dssp HS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 86 568899999999999999999999999999876 34468889999999999999999999999998752 335678
Q ss_pred HHHHHHHHhhcchHHHHHHHHHhccccCC
Q 022131 258 FETLYRGLIQSDMLRTWRRLKKKLDEESI 286 (302)
Q Consensus 258 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 286 (302)
+..+...+...|++++|.+.+++..+...
T Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQV 271 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 88999999999999999999998776543
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.4e-16 Score=122.20 Aligned_cols=227 Identities=10% Similarity=0.031 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCC--
Q 022131 34 VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-- 111 (302)
Q Consensus 34 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-- 111 (302)
...+..+...+.. .|++++|+..|++..+.. .+...+..+..++...|++++|...+++..+....
T Consensus 5 a~~~~~~g~~~~~----------~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 72 (258)
T 3uq3_A 5 ADKEKAEGNKFYK----------ARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR 72 (258)
T ss_dssp HHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH----------hccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence 4567777888888 888999999999999887 68899999999999999999999999998775321
Q ss_pred cC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHH
Q 022131 112 PT----VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187 (302)
Q Consensus 112 ~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 187 (302)
++ ..++..+...+...|++++|...+++..+.. |+. ..+...|+++++...++.+.... +.+...
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 141 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN--PEKAEE 141 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC--HHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC--cchHHH
Confidence 12 5788999999999999999999999999863 443 34666788999999999999875 566778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhh
Q 022131 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267 (302)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 267 (302)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++..
T Consensus 142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHH
Confidence 8999999999999999999999998863 4578899999999999999999999999998753 3357788889999999
Q ss_pred cchHHHHHHHHHhccccC
Q 022131 268 SDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 268 ~g~~~~a~~~~~~~~~~~ 285 (302)
.|++++|...+++..+..
T Consensus 220 ~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 220 VKEYASALETLDAARTKD 237 (258)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhC
Confidence 999999999999877654
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=1.3e-18 Score=139.82 Aligned_cols=222 Identities=11% Similarity=0.131 Sum_probs=85.9
Q ss_pred hcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 022131 11 KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90 (302)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (302)
+.|++++|.++++++. ++.+|..+..++.+ .+++++|++.|.+. +|..+|..++..+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~----------~g~~~eAIdsfika------~D~~~y~~V~~~ae 72 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQ----------KGMVKEAIDSYIKA------DDPSSYMEVVQAAN 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHH----------cCCHHHHHHHHHcC------CCHHHHHHHHHHHH
Confidence 5677888888888882 33588888888888 78888888888652 47778888888888
Q ss_pred hcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHH
Q 022131 91 RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMK 170 (302)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (302)
..|++++|+.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..
T Consensus 73 ~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~ 143 (449)
T 1b89_A 73 TSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKL 143 (449)
T ss_dssp --------------------------------------CHHHHTTTTT-------CC----------------CTTTHHH
T ss_pred hCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 889999999877776664 3456778888889999999888887774 2677788889999999999999998
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 022131 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250 (302)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 250 (302)
.|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|......+
T Consensus 144 ~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L---- 203 (449)
T 1b89_A 144 LYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI---- 203 (449)
T ss_dssp HHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT----
T ss_pred HHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH----
Confidence 88866 25788888889999999998888887 27788888889999999998886554432
Q ss_pred CCCchhhHHHHHHHHhhcchHHHHHHHHHhcccc
Q 022131 251 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 251 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (302)
..++.-...++..|.+.|.+++|..+++.....
T Consensus 204 -~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 204 -VVHADELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred -HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 233333556788888888888888888775543
No 31
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.75 E-value=1.1e-16 Score=124.05 Aligned_cols=247 Identities=9% Similarity=-0.025 Sum_probs=193.4
Q ss_pred hcCCcchHHHHHHHHHhCCC---cccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 022131 11 KINRIDMAERFLGEMIERGV---EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH 87 (302)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (302)
..|++++|++.|+++.+... +.+..++..+...+.. .|++++|...|+++.+.. +.+..++..+..
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~A~~~~~~al~~~-~~~~~~~~~la~ 85 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDS----------LGLRALARNDFSQALAIR-PDMPEVFNYLGI 85 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH----------cccHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 45789999999999988632 2246678888888888 888999999999999874 346889999999
Q ss_pred HHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchH
Q 022131 88 VYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANG 167 (302)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 167 (302)
.+...|++++|...++++.+... .+..++..+..+|.+.|++++|...++++.+.. |+.......+..+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~ 162 (275)
T 1xnf_A 86 YLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQ 162 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHH
Confidence 99999999999999999998753 367889999999999999999999999998863 454445555556677899999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 022131 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP---DLDSYTMLIHGLCEKQKWKEACQYFV 244 (302)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~ 244 (302)
|...+.+..... +++...+. ++..+...++.++|...+.......... +...+..+..++...|++++|...|+
T Consensus 163 A~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 239 (275)
T 1xnf_A 163 AKEVLKQHFEKS--DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK 239 (275)
T ss_dssp HHHHHHHHHHHS--CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999998887764 44544444 6777778888899999999887642111 25788889999999999999999999
Q ss_pred HHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHH
Q 022131 245 EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278 (302)
Q Consensus 245 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 278 (302)
+..+. .|+. +.....++...|++++|.+.+
T Consensus 240 ~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 240 LAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 99874 4533 233455778889999887765
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.74 E-value=2.1e-15 Score=115.40 Aligned_cols=203 Identities=10% Similarity=-0.026 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 022131 79 VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158 (302)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (302)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 4566677777777777777777777777654 33566777777777777777777777777776532 356677777777
Q ss_pred HHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 022131 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238 (302)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 238 (302)
+...|++++|...++++.+.+..+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777777622213355666777777777777777777777776652 3356677777777777777777
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccC
Q 022131 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 239 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (302)
|...++++.+. .+.+...+..+...+...|+.++|.++++++.+..
T Consensus 194 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 77777777653 23345566666777777777777777777766543
No 33
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.74 E-value=3.7e-15 Score=111.83 Aligned_cols=201 Identities=7% Similarity=-0.035 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcC
Q 022131 34 VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPT 113 (302)
Q Consensus 34 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 113 (302)
...+..+...+.. .|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+
T Consensus 8 ~~~~~~~~~~~~~----------~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 75 (225)
T 2vq2_A 8 SNIKTQLAMEYMR----------GQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDS 75 (225)
T ss_dssp HHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCC
Confidence 3445555555555 555666666666665543 2245556666666666666666666666665543 224
Q ss_pred HHHHHHHHHHHhcc-CCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHH
Q 022131 114 VATYSSVVKCLCSC-GRIEDAEELLGEMVRNGVCP-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNIL 191 (302)
Q Consensus 114 ~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 191 (302)
..++..+...+... |++++|...++++.+.+..| +...+..+...+...|++++|...+.++.+.. +.+...+..+
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 153 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKEL 153 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHH
Confidence 55556666666666 66666666666665521112 24455555566666666666666666665553 3445555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 192 IGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
...+...|++++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 154 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666666666666666666655542113455555555555666666666666665544
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=3.6e-17 Score=131.60 Aligned_cols=232 Identities=9% Similarity=0.024 Sum_probs=110.5
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 022131 1 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVT 80 (302)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (302)
+|+.|..++.+.|++++|++.|.+. +|..+|..++.++.. .|++++|++.++...+. .+++.
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~----------~g~~EeAi~yl~~ark~--~~~~~ 95 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANT----------SGNWEELVKYLQMARKK--ARESY 95 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHh--Cccch
Confidence 5889999999999999999999653 577799999999988 89999999988777664 45678
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (302)
+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.++.
T Consensus 96 i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~ 159 (449)
T 1b89_A 96 VETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLV 159 (449)
T ss_dssp -------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHH
Confidence 89999999999999999988885 367789999999999999999999999976 48999999999
Q ss_pred ccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 022131 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240 (302)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 240 (302)
+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +..++.....++..|.+.|.+++|.
T Consensus 160 ~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 160 HLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp TTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHH
Confidence 999999999999988 2678999999999999999999665443 2334555667999999999999999
Q ss_pred HHHHHHHHCCCCCchhhHHHHHHHHh--hcchHHHHHHHHH
Q 022131 241 QYFVEMIEKGLLPQKVTFETLYRGLI--QSDMLRTWRRLKK 279 (302)
Q Consensus 241 ~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~ 279 (302)
.+++...... +-....|+-+..+++ +.++..+..+.|.
T Consensus 228 ~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 228 TMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999886543 334455665555555 4455555555543
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.74 E-value=4.8e-16 Score=116.35 Aligned_cols=201 Identities=13% Similarity=0.019 Sum_probs=162.8
Q ss_pred cccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCC
Q 022131 31 EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGI 110 (302)
Q Consensus 31 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 110 (302)
+++...+..+...+.+ .|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+...
T Consensus 2 p~~~~~~~~lg~~~~~----------~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P 70 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYA----------LGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70 (217)
T ss_dssp --CCHHHHHHHHHHHH----------TTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCcHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5677788888888888 888999999999999875 44788999999999999999999999999998863
Q ss_pred CcCHHHHHHHHHHHhcc-----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCC
Q 022131 111 CPTVATYSSVVKCLCSC-----------GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179 (302)
Q Consensus 111 ~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (302)
.+...+..+..++.+. |++++|+..+++..+..+ -+...+..+..++...|++++|...|++..+..
T Consensus 71 -~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 71 -RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp -TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 3778899999999999 999999999999998743 467889999999999999999999999999885
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
.+...+..+..++...|++++|...+++..+. .+.+...+..+...+...|++++|+..+++...
T Consensus 149 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 149 ---DTPEIRSALAELYLSMGRLDEALAQYAKALEQ-APKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp ---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTC----------------
T ss_pred ---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 67888999999999999999999999999886 244778889999999999999999999987643
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.74 E-value=4.6e-15 Score=113.52 Aligned_cols=197 Identities=10% Similarity=0.063 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 136 (302)
.+++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...
T Consensus 50 ~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~ 127 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYEQKRYEEAYQR 127 (252)
T ss_dssp TTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456788999999998874 44788999999999999999999999999988753 3788899999999999999999999
Q ss_pred HHHHHHCCCCC-ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 022131 137 LGEMVRNGVCP-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215 (302)
Q Consensus 137 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (302)
++++.+.+..| +...+..+...+...|++++|...+.++.+.. +.+...+..+...+...|++++|...++.+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 204 (252)
T 2ho1_A 128 LLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQG- 204 (252)
T ss_dssp HHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 99998832334 56788888999999999999999999999875 567889999999999999999999999999886
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHH
Q 022131 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260 (302)
Q Consensus 216 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 260 (302)
.+.+...+..+...+...|++++|.+.++++.+. .|+...+..
T Consensus 205 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~ 247 (252)
T 2ho1_A 205 GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQE 247 (252)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHH
T ss_pred CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHH
Confidence 3457788889999999999999999999999874 465544443
No 37
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=8.4e-15 Score=118.43 Aligned_cols=245 Identities=9% Similarity=0.029 Sum_probs=197.4
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHH-HHHHHHHHHHHHhcCCCCCHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKT-IRNAEKVFDEMRVRGIEPDVT 80 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~ 80 (302)
|+.+...+.+.|++++|++.+++.+... +-+...|+.+..++.. .++ +++|+..|++...... -+..
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~----------~g~d~~eAl~~~~~al~l~P-~~~~ 167 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKS----------LQKDLHEEMNYITAIIEEQP-KNYQ 167 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----------TTCCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHH----------cccCHHHHHHHHHHHHHHCC-CCHH
Confidence 5567778888999999999999998863 3356788888888888 775 8999999999998753 3788
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (302)
.|+.+..++...|++++|+..|+++.+.... +...|..+..++.+.|++++|+..++++++... -+...|+.+..++.
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 9999999999999999999999999988643 788999999999999999999999999998754 47888999999988
Q ss_pred c-cCCchHH-----HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 022131 161 G-RKDANGA-----MKLYRQMKEDGLCVPNMHSYNILIGMFMALN--RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232 (302)
Q Consensus 161 ~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 232 (302)
. .|..++| +..+++..+.. +-+...|..+...+...| +.++|.+.+.++ +. .+.+...+..+..+|.+
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYED 321 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHH
Confidence 8 6665777 48888888875 667888999888888888 688999999888 33 34567788888888888
Q ss_pred cC---------CHHHHHHHHHHH-HHCCCCCch-hhHHHHHHHHh
Q 022131 233 KQ---------KWKEACQYFVEM-IEKGLLPQK-VTFETLYRGLI 266 (302)
Q Consensus 233 ~g---------~~~~a~~~~~~~-~~~~~~p~~-~~~~~l~~~~~ 266 (302)
.| ..++|+++++++ .+ +.|.. ..|..+...+.
T Consensus 322 ~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 322 MLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 64 358999999998 55 34544 34444444443
No 38
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.73 E-value=6.6e-15 Score=110.44 Aligned_cols=206 Identities=9% Similarity=-0.053 Sum_probs=175.5
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 022131 77 PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156 (302)
Q Consensus 77 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 156 (302)
.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence 356788889999999999999999999998875 34688899999999999999999999999988643 4678899999
Q ss_pred HHHHcc-CCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 022131 157 KEYRGR-KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235 (302)
Q Consensus 157 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 235 (302)
..+... |++++|...++++.+.+..+.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 999999 99999999999999833213446788899999999999999999999988863 3468889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccC
Q 022131 236 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 236 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (302)
+++|...++++.+..-..+...+..+...+...|+.+++..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99999999999875211466677777888889999999999999887543
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=4.5e-15 Score=114.90 Aligned_cols=231 Identities=10% Similarity=0.035 Sum_probs=167.6
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCC--HHH
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPD--VTS 81 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 81 (302)
.....+...|++++|+..|++..+.. +.+...+..+...+.. .|++++|+..+++..+.+..|+ ...
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~----------~~~~~~A~~~~~~a~~~~~~~~~~~~~ 76 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYE----------LAKYDLAQKDIETYFSKVNATKAKSAD 76 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHH----------TTCHHHHHHHHHHHHTTSCTTTCCHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHhccCchhHHHHH
Confidence 44566778888888888888887763 2344577777777777 7778888888888887432222 334
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (302)
|..+...+...|++++|...+++..+... .+..++..+...|...|++++|...+++..+.. +.+...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH
Confidence 77888888888888888888888877653 356778888888888888888888888887763 2456666666634444
Q ss_pred cCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHH
Q 022131 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR---MDMVREIWNDVKGSG-LGPD------LDSYTMLIHGLC 231 (302)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~ 231 (302)
.+++++|...++++.+.. +.+...+..+...+...|+ +++|...+++..+.. ..|+ ...|..+...|.
T Consensus 155 ~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 558888888888888775 4557777777777777777 777877777766531 1122 256777778888
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 022131 232 EKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 232 ~~g~~~~a~~~~~~~~~~ 249 (302)
..|++++|.+.+++..+.
T Consensus 233 ~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 233 INRDKVKADAAWKNILAL 250 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 888888888888888774
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=1.9e-15 Score=114.97 Aligned_cols=201 Identities=9% Similarity=0.047 Sum_probs=131.2
Q ss_pred cHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCc
Q 022131 33 NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP 112 (302)
Q Consensus 33 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (302)
....|..+...+.. .+++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.
T Consensus 22 ~~~~~~~~a~~~~~----------~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~ 89 (243)
T 2q7f_A 22 ASMTGGQQMGRGSE----------FGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SS 89 (243)
T ss_dssp ------------------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHHH----------hhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Cc
Confidence 34445555555655 677777777777777653 3356677777777777888888888887777664 23
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 022131 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192 (302)
Q Consensus 113 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 192 (302)
+..++..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 166 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFG 166 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHH
Confidence 566777777777777888888888877776542 456677777777777888888888887777664 45667777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 022131 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 249 (302)
..+...|++++|...++++.+. .+.+..++..+..++...|++++|...++++.+.
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 167 MCLANEGMLDEALSQFAAVTEQ-DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777778888888877777665 2345667777777777778888888887777663
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.71 E-value=5.5e-14 Score=108.98 Aligned_cols=226 Identities=11% Similarity=-0.018 Sum_probs=196.3
Q ss_pred cHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCchhHHHHHHHHHhc
Q 022131 33 NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR----AHQPQLSLDKLNFMKEK 108 (302)
Q Consensus 33 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~ 108 (302)
+..++..+-..+.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+.
T Consensus 5 ~~~a~~~lg~~~~~----------~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 71 (273)
T 1ouv_A 5 DPKELVGLGAKSYK----------EKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 71 (273)
T ss_dssp CHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence 55667777777877 778899999999998843 56788889999999 99999999999999988
Q ss_pred CCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCchHHHHHHHHHHhCCC
Q 022131 109 GICPTVATYSSVVKCLCS----CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG----RKDANGAMKLYRQMKEDGL 180 (302)
Q Consensus 109 ~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 180 (302)
+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+
T Consensus 72 ~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~- 144 (273)
T 1ouv_A 72 N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN- 144 (273)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-
T ss_pred C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-
Confidence 6 67888899999999 999999999999999874 77888999999998 999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC
Q 022131 181 CVPNMHSYNILIGMFMA----LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE----KQKWKEACQYFVEMIEKGLL 252 (302)
Q Consensus 181 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~ 252 (302)
+...+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+
T Consensus 145 ---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-- 216 (273)
T 1ouv_A 145 ---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-- 216 (273)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--
T ss_pred ---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--
Confidence 55677888888888 899999999999998863 56788889999999 999999999999998864
Q ss_pred CchhhHHHHHHHHhh----cchHHHHHHHHHhccccCCC
Q 022131 253 PQKVTFETLYRGLIQ----SDMLRTWRRLKKKLDEESIT 287 (302)
Q Consensus 253 p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 287 (302)
+...+..+...+.. .++.++|.+.+++..+.+..
T Consensus 217 -~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 217 -NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp -CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred -CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 25677778888888 99999999999998877654
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=1.9e-15 Score=114.99 Aligned_cols=208 Identities=10% Similarity=0.020 Sum_probs=164.8
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
|..+...+...|++++|...|+++.+.. +.+...+..+...+.. .+++++|+..|+++.+.. +.+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~----------~~~~~~A~~~~~~~~~~~-~~~~~~ 93 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSS----------VNELERALAFYDKALELD-SSAATA 93 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHcC-CcchHH
Confidence 4556777889999999999999998863 4467788888888888 888999999999998874 347888
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (302)
+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+... .+...+..+...+..
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHH
Confidence 9999999999999999999999998875 34788899999999999999999999999988643 467889999999999
Q ss_pred cCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 022131 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTML 226 (302)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 226 (302)
.|++++|...+.++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+...+..+
T Consensus 172 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp HTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 999999999999998885 5678899999999999999999999999998852 2344444433
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=4.8e-15 Score=114.73 Aligned_cols=236 Identities=10% Similarity=-0.028 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCc--
Q 022131 35 VTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP-- 112 (302)
Q Consensus 35 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-- 112 (302)
..+......+.. .|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+....+
T Consensus 4 ~~~~~~a~~~~~----------~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 72 (272)
T 3u4t_A 4 DVEFRYADFLFK----------NNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA 72 (272)
T ss_dssp -CHHHHHHHHHT----------TTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC
T ss_pred HHHHHHHHHHHH----------hcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH
Confidence 344555566777 788999999999999874 3356688889999999999999999999998843222
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 022131 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192 (302)
Q Consensus 113 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 192 (302)
...+|..+...+...|++++|...+++..+... .+..++..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~ 149 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELG 149 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHH
Confidence 244588999999999999999999999998743 467889999999999999999999999998875 66778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCch------hhHHHHH
Q 022131 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK---WKEACQYFVEMIEKG-LLPQK------VTFETLY 262 (302)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~p~~------~~~~~l~ 262 (302)
..+...+++++|.+.++++.+.. +.+...+..+..++...|+ +++|...+++..+.. -.|+. .++..+.
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 34445569999999999998862 3457788888888888888 888999999887641 22432 5777888
Q ss_pred HHHhhcchHHHHHHHHHhccccC
Q 022131 263 RGLIQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~~~~~~ 285 (302)
..+...|++++|.+.+++..+..
T Consensus 229 ~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 229 YYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Confidence 89999999999999999987655
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=1.1e-14 Score=117.67 Aligned_cols=230 Identities=9% Similarity=0.003 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-chhHHHHHHHHHhcCCCc
Q 022131 34 VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ-PQLSLDKLNFMKEKGICP 112 (302)
Q Consensus 34 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~ 112 (302)
...|..+...+.. .+++++|+..|++..... +-+...|+.+..++...|+ +++|+..++++.+....
T Consensus 97 ~~a~~~lg~~~~~----------~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~- 164 (382)
T 2h6f_A 97 RDVYDYFRAVLQR----------DERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK- 164 (382)
T ss_dssp HHHHHHHHHHHHH----------TCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHH----------CCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-
Confidence 3567777777777 677899999999999875 3368899999999999997 99999999999998644
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 022131 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192 (302)
Q Consensus 113 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 192 (302)
+...|..+..++.+.|++++|+..|+++++... -+...|..+..++...|++++|+..++++.+.. +.+...|+.+.
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg 241 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRY 241 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 788999999999999999999999999998754 478899999999999999999999999999987 67889999999
Q ss_pred HHHHh-cCCHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCchhhHHHHHHH
Q 022131 193 GMFMA-LNRMDMV-----REIWNDVKGSGLGPDLDSYTMLIHGLCEKQ--KWKEACQYFVEMIEKGLLPQKVTFETLYRG 264 (302)
Q Consensus 193 ~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 264 (302)
.++.. .|..++| ...+++..... +-+...|+.+...+...| ++++|++.+.++ + ....+...+..+...
T Consensus 242 ~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~ 318 (382)
T 2h6f_A 242 FVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDI 318 (382)
T ss_dssp HHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHH
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHH
Confidence 99999 6665777 48888887752 346788888888888888 689999999888 3 233456778888888
Q ss_pred Hhhcc---------hHHHHHHHHHhc
Q 022131 265 LIQSD---------MLRTWRRLKKKL 281 (302)
Q Consensus 265 ~~~~g---------~~~~a~~~~~~~ 281 (302)
+.+.| ..++|.++++++
T Consensus 319 ~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 319 YEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHHH
Confidence 88874 358999999998
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.69 E-value=1e-14 Score=113.00 Aligned_cols=222 Identities=7% Similarity=-0.097 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGI---EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDA 133 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 133 (302)
.+++++|+..|+++.+... +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 6899999999999998632 1246788899999999999999999999999875 34788999999999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022131 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
...+++..+... .+..++..+...+...|++++|...++++.+.. |+.......+..+...|++++|...+++...
T Consensus 97 ~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999998743 467889999999999999999999999999874 4434444455566777999999999988777
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C-chhhHHHHHHHHhhcchHHHHHHHHHhccccC
Q 022131 214 SGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL--P-QKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 214 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (302)
. .+++...+ .++..+...++.++|...+.+..+.... | +..++..+...+...|++++|...+++..+..
T Consensus 173 ~-~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 173 K-SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp H-SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred c-CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 5 23444444 4777778888999999999988653211 1 15778889999999999999999999988765
No 46
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.69 E-value=3.4e-14 Score=118.80 Aligned_cols=219 Identities=9% Similarity=0.002 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP-QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEE 135 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 135 (302)
.+.++++++.+++..... +.+...+..+...+...|++ ++|.+.|++..+... .+...|..+..+|.+.|++++|..
T Consensus 81 ~~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 566788888888876653 34788999999999999999 999999999988753 368899999999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHcc---------CCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--------
Q 022131 136 LLGEMVRNGVCPSAETYNCFFKEYRGR---------KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL-------- 198 (302)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 198 (302)
.|++..+.. |+...+..+...+... |++++|...+++..+.. +.+...|..+..+|...
T Consensus 159 ~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 159 CFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhcccc
Confidence 999999874 6678899999999999 99999999999999886 67789999999999998
Q ss_pred CCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHH
Q 022131 199 NRMDMVREIWNDVKGSGLG--PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR 276 (302)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 276 (302)
|++++|...|++..+.... .+...|..+..+|...|++++|.+.|++..+.. +-+...+..+..++...|+.++|.+
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999885210 378899999999999999999999999998752 2345678888899999999999987
Q ss_pred HHHhcc
Q 022131 277 LKKKLD 282 (302)
Q Consensus 277 ~~~~~~ 282 (302)
.+.++.
T Consensus 314 ~~~~~~ 319 (474)
T 4abn_A 314 SKGKTK 319 (474)
T ss_dssp HTTTCC
T ss_pred Hhcccc
Confidence 665543
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=3.2e-13 Score=104.62 Aligned_cols=224 Identities=10% Similarity=0.021 Sum_probs=188.9
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
+..+-..+...|++++|.+.|++..+.+ +...+..+...+...... .+++++|...|++..+.+ +...
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~------~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGV------EKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS------CCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc------CCCHHHHHHHHHHHHHCC---CHHH
Confidence 3456677888999999999999998843 445666666666651110 456789999999999875 7888
Q ss_pred HHHHHHHHHh----cCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhhHH
Q 022131 82 FSIVLHVYSR----AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS----CGRIEDAEELLGEMVRNGVCPSAETYN 153 (302)
Q Consensus 82 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (302)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8999999999 999999999999999875 67888999999998 999999999999999875 567788
Q ss_pred HHHHHHHc----cCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 022131 154 CFFKEYRG----RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA----LNRMDMVREIWNDVKGSGLGPDLDSYTM 225 (302)
Q Consensus 154 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (302)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 88888888 999999999999998874 45778888899999 999999999999998864 3678888
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHCC
Q 022131 226 LIHGLCE----KQKWKEACQYFVEMIEKG 250 (302)
Q Consensus 226 li~~~~~----~g~~~~a~~~~~~~~~~~ 250 (302)
+...|.. .+++++|.+.|++..+.|
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8899988 999999999999998864
No 48
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.67 E-value=1.5e-15 Score=124.69 Aligned_cols=270 Identities=11% Similarity=-0.004 Sum_probs=204.9
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCcccH----HHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc----C-
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIERGVEPNV----VTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR----G- 74 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~- 74 (302)
.+...+...|++++|+..|+++.+.+.. +. ..+..+...+.. .|++++|+..|++..+. +
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~----------~g~~~~A~~~~~~al~~~~~~~~ 121 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFY----------LGDYNKAMQYHKHDLTLAKSMND 121 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHccC
Confidence 4556778999999999999999886322 22 467778888888 77888888888877653 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhc----C-CCcCHHHHHHHHHHHhccCC-----------------HHH
Q 022131 75 IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK----G-ICPTVATYSSVVKCLCSCGR-----------------IED 132 (302)
Q Consensus 75 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~~~-----------------~~~ 132 (302)
.+....++..+...+...|++++|...+++..+. + .+....++..+...|...|+ +++
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 1224567888999999999999999999988654 1 12235578888999999999 999
Q ss_pred HHHHHHHHHHC----CC-CCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHH
Q 022131 133 AEELLGEMVRN----GV-CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN----MHSYNILIGMFMALNRMDM 203 (302)
Q Consensus 133 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 203 (302)
|...+++..+. +. .....++..+...+...|++++|...+++..+.....++ ...+..+...+...|++++
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 99999887643 11 112457788889999999999999999988765210112 2377888999999999999
Q ss_pred HHHHHHHHHhCCC--C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CchhhHHHHHHHHhhcchHHH
Q 022131 204 VREIWNDVKGSGL--G---PDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLL-PQKVTFETLYRGLIQSDMLRT 273 (302)
Q Consensus 204 a~~~~~~~~~~~~--~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~ 273 (302)
|...+++...... . ....++..+...+...|++++|...+++..+. +.. ....++..+...+...|++++
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 361 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHER 361 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHH
Confidence 9999998775311 0 12467888899999999999999999998753 111 123477888899999999999
Q ss_pred HHHHHHhcccc
Q 022131 274 WRRLKKKLDEE 284 (302)
Q Consensus 274 a~~~~~~~~~~ 284 (302)
|.+.+++..+.
T Consensus 362 A~~~~~~al~~ 372 (411)
T 4a1s_A 362 ALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999886654
No 49
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=1.5e-13 Score=108.51 Aligned_cols=220 Identities=10% Similarity=0.033 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCc-------hhHHHHHHHHHhcCCCcCHHHHHHHHHHHhc
Q 022131 61 RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR-------AHQP-------QLSLDKLNFMKEKGICPTVATYSSVVKCLCS 126 (302)
Q Consensus 61 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 126 (302)
++|..+|++..... +.+...|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888999988863 4477888888887763 5886 8999999999984123367789999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-hh-hHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-hcCCHHH
Q 022131 127 CGRIEDAEELLGEMVRNGVCPS-AE-TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFM-ALNRMDM 203 (302)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 203 (302)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.. +++...|........ ..|+.++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999985 343 33 89999999999999999999999999875 455555554444322 3699999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCc--hhhHHHHHHHHhhcchHHHHHHHHHh
Q 022131 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG-LLPQ--KVTFETLYRGLIQSDMLRTWRRLKKK 280 (302)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (302)
|..+|++..+. .+-+...|..++..+.+.|++++|..+|++..+.. +.|+ ...|..++......|+.++|..++++
T Consensus 188 A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998875 34478899999999999999999999999999863 4553 46788888889999999999999998
Q ss_pred ccccCC
Q 022131 281 LDEESI 286 (302)
Q Consensus 281 ~~~~~~ 286 (302)
+.+...
T Consensus 267 a~~~~p 272 (308)
T 2ond_A 267 RFTAFR 272 (308)
T ss_dssp HHHHTT
T ss_pred HHHHcc
Confidence 776543
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.66 E-value=9.2e-14 Score=101.04 Aligned_cols=171 Identities=16% Similarity=0.085 Sum_probs=141.1
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 157 (302)
++.+|..+...+.+.|++++|++.|++..+... -+..++..+..+|.+.|++++|...++....... .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 677888899999999999999999999888753 3777888888999999999999999988887643 45677777778
Q ss_pred HHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 022131 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237 (302)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 237 (302)
.+...++++.+...+.+..... +.+...+..+...+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 8888899999999998888875 5677888888888999999999999999888752 346778888888899999999
Q ss_pred HHHHHHHHHHHCCCCCch
Q 022131 238 EACQYFVEMIEKGLLPQK 255 (302)
Q Consensus 238 ~a~~~~~~~~~~~~~p~~ 255 (302)
+|++.|++..+. .|+.
T Consensus 159 ~A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHHHHT--THHH
T ss_pred HHHHHHHHHHhC--CccC
Confidence 999999988773 4543
No 51
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.65 E-value=3.3e-13 Score=106.52 Aligned_cols=226 Identities=8% Similarity=-0.012 Sum_probs=179.8
Q ss_pred chHHHHHHHHHhCCCcccHHHHHHHHHHHHhc-------ccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 022131 16 DMAERFLGEMIERGVEPNVVTYNVLLNGVCRR-------ASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88 (302)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 88 (302)
++|..+|++.... .+-+...|..+...+... |+.... .+..++|..+|++....-.+.+...|..++..
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~---~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA---KLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHH---HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhc---ccchHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 6888999999876 245677888888777542 322111 34468999999999983123356789999999
Q ss_pred HHhcCCchhHHHHHHHHHhcCCCcCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-ccCCch
Q 022131 89 YSRAHQPQLSLDKLNFMKEKGICPTVA-TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR-GRKDAN 166 (302)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ 166 (302)
+.+.|++++|..+|+++.+.... +.. +|..++..+.+.|++++|..+|++..+... ++...|........ ..|+.+
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHH
T ss_pred HHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999986422 343 899999999999999999999999998743 34555554443322 379999
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 022131 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG-LGP--DLDSYTMLIHGLCEKQKWKEACQYF 243 (302)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~ 243 (302)
+|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++..... .+| ....|..++......|+.+.|..++
T Consensus 187 ~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 187 VAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998875 5678899999999999999999999999999863 354 4678999999999999999999999
Q ss_pred HHHHHC
Q 022131 244 VEMIEK 249 (302)
Q Consensus 244 ~~~~~~ 249 (302)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.64 E-value=5e-15 Score=121.22 Aligned_cols=269 Identities=10% Similarity=-0.003 Sum_probs=202.3
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCccc----HHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc----CC
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIERGVEPN----VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR----GI 75 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~ 75 (302)
.....+...|++++|...|++..+.+. .+ ...+..+...+.. .|++++|...+++.... +.
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~al~~~~~~~~ 82 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFY----------LHDYAKALEYHHHDLTLARTIGD 82 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHH----------hcCHHHHHHHHHHHHHHHHhccc
Confidence 455678899999999999999988632 22 3567778888888 67778888888776542 21
Q ss_pred CC-CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCC-----CcCHHHHHHHHHHHhccCC--------------------
Q 022131 76 EP-DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGI-----CPTVATYSSVVKCLCSCGR-------------------- 129 (302)
Q Consensus 76 ~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~-------------------- 129 (302)
.| ...++..+...+...|++++|...+++..+... .....++..+...|...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 22 255788889999999999999999998865411 1124478888899999999
Q ss_pred HHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCC
Q 022131 130 IEDAEELLGEMVRN----GV-CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN----MHSYNILIGMFMALNR 200 (302)
Q Consensus 130 ~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~ 200 (302)
+++|...+++..+. +. .....++..+...+...|++++|...+++..+.....++ ..++..+...+...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999887643 11 112457788888999999999999999988754210122 3378888899999999
Q ss_pred HHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-chhhHHHHHHHHhhcch
Q 022131 201 MDMVREIWNDVKGSGL-GPD----LDSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLLP-QKVTFETLYRGLIQSDM 270 (302)
Q Consensus 201 ~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~ 270 (302)
+++|...+++...... .++ ..++..+...+...|++++|...+++..+. +-.+ ...++..+...+...|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 9999999998765311 011 567888899999999999999999998753 1111 14577888899999999
Q ss_pred HHHHHHHHHhccc
Q 022131 271 LRTWRRLKKKLDE 283 (302)
Q Consensus 271 ~~~a~~~~~~~~~ 283 (302)
+++|.+.+++..+
T Consensus 323 ~~~A~~~~~~al~ 335 (406)
T 3sf4_A 323 HDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888654
No 53
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.63 E-value=6.8e-15 Score=117.10 Aligned_cols=271 Identities=11% Similarity=-0.004 Sum_probs=201.4
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCccc----HHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc----CC
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIERGVEPN----VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR----GI 75 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~ 75 (302)
.....+...|++++|...|+++.+... .+ ...+..+...+.. .|++++|.+.+++.... +.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~al~~~~~~~~ 78 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFY----------LHDYAKALEYHHHDLTLARTIGD 78 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHhhcccc
Confidence 345677899999999999999988632 22 3567778888888 67778888887776542 11
Q ss_pred C-CCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCC-CcC----HHHHHHHHHHHhccCC--------------------
Q 022131 76 E-PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGI-CPT----VATYSSVVKCLCSCGR-------------------- 129 (302)
Q Consensus 76 ~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~-------------------- 129 (302)
. ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 1 2356788899999999999999999998765411 112 3478888899999999
Q ss_pred HHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCC
Q 022131 130 IEDAEELLGEMVRN----GV-CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP----NMHSYNILIGMFMALNR 200 (302)
Q Consensus 130 ~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~ 200 (302)
+++|...+++.... +. .....++..+...+...|++++|...+++..+.....+ ...++..+...+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 99999999886542 11 11245778888899999999999999998865421011 13377888899999999
Q ss_pred HHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CchhhHHHHHHHHhhcch
Q 022131 201 MDMVREIWNDVKGSGL-GPD----LDSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLL-PQKVTFETLYRGLIQSDM 270 (302)
Q Consensus 201 ~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~ 270 (302)
+++|...+++..+... .++ ..++..+...+...|++++|...+++..+. +-. ....++..+...+...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 9999999998765311 111 567788889999999999999999988653 111 123467788899999999
Q ss_pred HHHHHHHHHhccccC
Q 022131 271 LRTWRRLKKKLDEES 285 (302)
Q Consensus 271 ~~~a~~~~~~~~~~~ 285 (302)
+++|...+++..+..
T Consensus 319 ~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 319 HDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999876543
No 54
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=7.2e-13 Score=110.78 Aligned_cols=198 Identities=11% Similarity=-0.045 Sum_probs=106.4
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhC-----C---CcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIER-----G---VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~-----~---~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 73 (302)
||.|-..+...|++++|++.|++..+. + .+....+|+.+..+|.. .|++++|...+++....
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~----------~g~~~~A~~~~~ka~~i 123 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH----------MGRLSDVQIYVDKVKHV 123 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH----------cCChHHHHHHHHHHHHH
Confidence 788889999999999999999987542 1 22345678888888888 45555555555544331
Q ss_pred -----C--CCCCHHHHHHHHHHHHhc--CCchhHHHHHHHHHhcCCCcCHHHHHHHHHH---HhccCCHHHHHHHHHHHH
Q 022131 74 -----G--IEPDVTSFSIVLHVYSRA--HQPQLSLDKLNFMKEKGICPTVATYSSVVKC---LCSCGRIEDAEELLGEMV 141 (302)
Q Consensus 74 -----~--~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~ 141 (302)
+ ......+++.+..++... +++++|+..|++..+.... +...+..+..+ +...++.++|+..+++..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al 202 (472)
T 4g1t_A 124 CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI 202 (472)
T ss_dssp HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH
T ss_pred hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 0 011234444444444332 3466666666666655321 33344333333 223345555555555555
Q ss_pred HCCCCCChhhHHHHHHHHH----ccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022131 142 RNGVCPSAETYNCFFKEYR----GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
+... .+..++..+...+. ..++.++|.+.+++..... +.+...+..+...+...|++++|...+++..+
T Consensus 203 ~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 203 RLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 4422 23333333333322 2344455555555555543 44455555555556666666666655555554
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=4.6e-13 Score=97.31 Aligned_cols=167 Identities=10% Similarity=0.068 Sum_probs=149.8
Q ss_pred cHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCc
Q 022131 33 NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP 112 (302)
Q Consensus 33 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (302)
++..|..+-..+.. .|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+........ .
T Consensus 4 ~~~iy~~lG~~~~~----------~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~ 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKRT----------KGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-T 71 (184)
T ss_dssp CHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-C
T ss_pred HHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-h
Confidence 56788899999999 899999999999999875 33788999999999999999999999999988753 3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 022131 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192 (302)
Q Consensus 113 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 192 (302)
+...+..+...+...++++.|...+++..+... .+...+..+...+...|++++|++.|++..+.. +.+..++..+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg 148 (184)
T 3vtx_A 72 SAEAYYILGSANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIG 148 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHH
Confidence 677888888999999999999999999988643 467889999999999999999999999999886 67889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 022131 193 GMFMALNRMDMVREIWNDVKGS 214 (302)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~ 214 (302)
.++.+.|++++|.+.|++..+.
T Consensus 149 ~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 149 LAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999874
No 56
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.60 E-value=1.3e-11 Score=103.79 Aligned_cols=210 Identities=12% Similarity=0.074 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhc----cCC
Q 022131 58 KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR----AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS----CGR 129 (302)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~ 129 (302)
++.++|.+.|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .++
T Consensus 201 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d 274 (490)
T 2xm6_A 201 RNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKE 274 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCC
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCC
Confidence 34455555555555443 34444555555543 455666666666655543 33444455555554 566
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc-----CCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC---CH
Q 022131 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR-----KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN---RM 201 (302)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~ 201 (302)
.++|..+|++..+.| +...+..+...|... +++++|...+++..+.+ +...+..+...|...| +.
T Consensus 275 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~~g~~~~~ 347 (490)
T 2xm6_A 275 PLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG----DATAQANLGAIYFRLGSEEEH 347 (490)
T ss_dssp HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCcccH
Confidence 666666666666542 344555556666555 67777777777766654 3345555666665545 66
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhh----cchHHH
Q 022131 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCE----KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRT 273 (302)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 273 (302)
++|.+.|++..+. .+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .++.++
T Consensus 348 ~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~ 421 (490)
T 2xm6_A 348 KKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQ 421 (490)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 7777777777765 356677777777777 678888888888877754 45566667777766 678888
Q ss_pred HHHHHHhccccCC
Q 022131 274 WRRLKKKLDEESI 286 (302)
Q Consensus 274 a~~~~~~~~~~~~ 286 (302)
|..++++..+.+.
T Consensus 422 A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 422 AWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCC
Confidence 8888887776663
No 57
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.59 E-value=2.6e-11 Score=102.01 Aligned_cols=110 Identities=12% Similarity=0.032 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhc----cCCH
Q 022131 59 TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR----AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS----CGRI 130 (302)
Q Consensus 59 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~ 130 (302)
++++|...|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 3444444444444433 33334444444443 344444555444444432 33344444444443 4444
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCchHHHHHHHHHHh
Q 022131 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRG----RKDANGAMKLYRQMKE 177 (302)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 177 (302)
++|..+|++..+.| +...+..+...|.. .+++++|...|++..+
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 44444444444432 23333333333332 3444444444444443
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.59 E-value=6.3e-14 Score=117.20 Aligned_cols=214 Identities=8% Similarity=-0.040 Sum_probs=181.7
Q ss_pred cchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 022131 15 IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTI-RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93 (302)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 93 (302)
++++++.++..... .+.+...+..+...+.. .+++ ++|++.|++..+.. +.+...|..+..+|.+.|
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~----------~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g 151 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNV----------TPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKG 151 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTS----------SSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHh----------ccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC
Confidence 55666666665544 23467788888888888 7788 99999999998874 336889999999999999
Q ss_pred CchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc--
Q 022131 94 QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC---------GRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR-- 162 (302)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 162 (302)
++++|.+.|++..+.. |+...+..+...+... |++++|+..+++..+... .+...|..+..+|...
T Consensus 152 ~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 152 DVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYF 228 (474)
T ss_dssp CHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHH
Confidence 9999999999999875 6678899999999999 999999999999998743 4688899999999988
Q ss_pred ------CCchHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 022131 163 ------KDANGAMKLYRQMKEDGLCV---PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK 233 (302)
Q Consensus 163 ------~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 233 (302)
|++++|...|++..+.. + .+...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++...
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFL 305 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hhccccchHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Confidence 99999999999999874 4 588999999999999999999999999998862 34667888899999999
Q ss_pred CCHHHHHHHHHHH
Q 022131 234 QKWKEACQYFVEM 246 (302)
Q Consensus 234 g~~~~a~~~~~~~ 246 (302)
|++++|++.+.++
T Consensus 306 g~~~eAi~~~~~~ 318 (474)
T 4abn_A 306 SRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHhccc
Confidence 9999998866543
No 59
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=1.1e-13 Score=109.06 Aligned_cols=206 Identities=13% Similarity=0.061 Sum_probs=152.0
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhc-------CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC------C
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK-------GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN------G 144 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 144 (302)
+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567788888888888888888888888763 22334566778888888888888888888887654 1
Q ss_pred -CCCChhhHHHHHHHHHccCCchHHHHHHHHHHhC------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 022131 145 -VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED------GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS--- 214 (302)
Q Consensus 145 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 214 (302)
.+....++..+...+...|++++|...+.+..+. +..+.....+..+...+...|++++|.+.++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223567777888888888888888888887764 211233456777888888888888888888887653
Q ss_pred ---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----------------------------------------
Q 022131 215 ---GLGP-DLDSYTMLIHGLCEKQKWKEACQYFVEMIEK----------------------------------------- 249 (302)
Q Consensus 215 ---~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------------------------------------- 249 (302)
+..| ...++..+..++...|++++|...++++.+.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 2456777888888888998888888887652
Q ss_pred -------CCCCchhhHHHHHHHHhhcchHHHHHHHHHhccc
Q 022131 250 -------GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 250 -------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
..+.+..++..+..+|...|++++|.+++++..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1122446788889999999999999999988654
No 60
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=9.3e-14 Score=109.45 Aligned_cols=208 Identities=12% Similarity=0.021 Sum_probs=164.5
Q ss_pred cccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCchhHHHHHH
Q 022131 31 EPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR-------GIEPDVTSFSIVLHVYSRAHQPQLSLDKLN 103 (302)
Q Consensus 31 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 103 (302)
+.+..++..+...+.. .|++++|...|+++.+. ..+.....+..+...+...|++++|...++
T Consensus 24 ~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 93 (311)
T 3nf1_A 24 PARLRTLHNLVIQYAS----------QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLN 93 (311)
T ss_dssp CHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3356678888888888 77788888888887763 223356788899999999999999999999
Q ss_pred HHHhc------CC-CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC------CC-CCChhhHHHHHHHHHccCCchHHH
Q 022131 104 FMKEK------GI-CPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN------GV-CPSAETYNCFFKEYRGRKDANGAM 169 (302)
Q Consensus 104 ~~~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~ 169 (302)
+..+. +. +....++..+...|...|++++|...+++..+. +. +.....+..+...+...|++++|.
T Consensus 94 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 173 (311)
T 3nf1_A 94 DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE 173 (311)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88764 22 234567889999999999999999999998764 21 224567888889999999999999
Q ss_pred HHHHHHHhC------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------------------------
Q 022131 170 KLYRQMKED------GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS----------------------------- 214 (302)
Q Consensus 170 ~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------------- 214 (302)
..+++..+. +..+....++..+...+...|++++|.+.++++.+.
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK 253 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc
Confidence 999998775 211334567888999999999999999999988752
Q ss_pred -------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 215 -------------------GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 215 -------------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
..+.+..++..+..+|...|++++|...+++..+
T Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 254 QKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1122456788899999999999999999999875
No 61
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=1e-11 Score=103.86 Aligned_cols=269 Identities=11% Similarity=0.000 Sum_probs=191.2
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhC-----C-Cc-ccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcC
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIER-----G-VE-PNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG 74 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~-----~-~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 74 (302)
|+.+...|...|++++|...+++..+. + .. ....++.....++...+ .+++++|+..|++..+..
T Consensus 97 ~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~--------~~~y~~A~~~~~kal~~~ 168 (472)
T 4g1t_A 97 WGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCG--------GNQNERAKVCFEKALEKK 168 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHC--------TTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHc--------cccHHHHHHHHHHHHHhC
Confidence 667788899999999999999987653 1 11 12345555554555422 467899999999999874
Q ss_pred CCCCHHHHHHHHHH---HHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCC
Q 022131 75 IEPDVTSFSIVLHV---YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS----CGRIEDAEELLGEMVRNGVCP 147 (302)
Q Consensus 75 ~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 147 (302)
. -+...+..+..+ +...++.++|++.+++..+... .+..++..+...+.. .+++++|...+++...... .
T Consensus 169 p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~ 245 (472)
T 4g1t_A 169 P-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-G 245 (472)
T ss_dssp T-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-S
T ss_pred C-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-c
Confidence 2 245555555544 3456778899999999888753 356666666555443 4678899999999887643 5
Q ss_pred ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHH
Q 022131 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL-------------------NRMDMVREIW 208 (302)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~ 208 (302)
+..++..+...|...|++++|...+.+..+.. +.+..++..+..+|... +..+.|...+
T Consensus 246 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 323 (472)
T 4g1t_A 246 VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHL 323 (472)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 67888999999999999999999999999885 56677777776665432 2356778888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchh--hHHHHHH-HHhhcchHHHHHHHHHhcccc
Q 022131 209 NDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV--TFETLYR-GLIQSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 209 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~ 284 (302)
++..+.. +.+...+..+...+...|++++|...|++..+....|... .+..+.. .....|+.++|...+++..+.
T Consensus 324 ~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 324 KKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred HHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8777652 3456778889999999999999999999998864333221 2222222 234678999999998876553
No 62
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=1.6e-11 Score=104.21 Aligned_cols=217 Identities=10% Similarity=0.047 Sum_probs=151.1
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCch-------hHHHHHHHHHhcCCCcCHHHHHHHHHHHhcc
Q 022131 62 NAEKVFDEMRVRGIEPDVTSFSIVLHVYSR-------AHQPQ-------LSLDKLNFMKEKGICPTVATYSSVVKCLCSC 127 (302)
Q Consensus 62 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 127 (302)
++..+|++..... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4455666666542 3356677777776665 57776 7888888887622233577788888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhcCCHHHH
Q 022131 128 GRIEDAEELLGEMVRNGVCPS--AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM-FMALNRMDMV 204 (302)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a 204 (302)
|++++|..+|+++.+. .|+ ...|..++..+.+.|+.++|..+|++..+.. +.+...+...... +...|+.++|
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHcCChhHH
Confidence 8888888888888875 333 2478888888888888888888888888764 2333333332222 3357888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCc--hhhHHHHHHHHhhcchHHHHHHHHHhc
Q 022131 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG-LLPQ--KVTFETLYRGLIQSDMLRTWRRLKKKL 281 (302)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 281 (302)
..+|+...+. .+.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+..+.+++
T Consensus 411 ~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 411 FKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888887765 23467788888888888888888888888887752 2232 236667777777788888888887776
Q ss_pred ccc
Q 022131 282 DEE 284 (302)
Q Consensus 282 ~~~ 284 (302)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 63
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.54 E-value=8.4e-12 Score=101.14 Aligned_cols=268 Identities=9% Similarity=-0.047 Sum_probs=189.2
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCcccHH----HHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCC-CCC--
Q 022131 6 IYGWCKINRIDMAERFLGEMIERGVEPNVV----TYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI-EPD-- 78 (302)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-- 78 (302)
...+...|++++|...+++........+.. .++.+...+.. .|++++|...+++...... .++
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~al~~~~~~~~~~ 90 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC----------KGELTRSLALMQQTEQMARQHDVWH 90 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHh----------cCcHHHHHHHHHHHHHHHHhcCcHH
Confidence 345667899999999999988763222222 34555566666 7788888888888765311 112
Q ss_pred --HHHHHHHHHHHHhcCCchhHHHHHHHHHhc----CCC--c-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--
Q 022131 79 --VTSFSIVLHVYSRAHQPQLSLDKLNFMKEK----GIC--P-TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP-- 147 (302)
Q Consensus 79 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-- 147 (302)
..++..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+.....
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 234667888899999999999999988654 221 2 34456778888999999999999999987643211
Q ss_pred --ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCC-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 022131 148 --SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN-MHSYN----ILIGMFMALNRMDMVREIWNDVKGSGLGPD- 219 (302)
Q Consensus 148 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 219 (302)
...++..+...+...|++++|...+++.......... ..... ..+..+...|+.++|...++........++
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 250 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 250 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch
Confidence 2356777888899999999999999998754210111 11111 233457789999999999998876432211
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCch-hhHHHHHHHHhhcchHHHHHHHHHhccc
Q 022131 220 --LDSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLLPQK-VTFETLYRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 220 --~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
...+..+...+...|++++|...+++..+. |..++. ..+..+..++...|+.++|...+++..+
T Consensus 251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 251 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 234667788899999999999999988643 222233 3566677888899999999998887554
No 64
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.54 E-value=2.1e-12 Score=93.56 Aligned_cols=165 Identities=13% Similarity=0.036 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 022131 79 VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158 (302)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (302)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3456666777777788888888777776553 23566777777777777888888887777776532 356667777777
Q ss_pred HHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 022131 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238 (302)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 238 (302)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 777777777777777777664 4566677777777777777777777777766652 3456677777777777777777
Q ss_pred HHHHHHHHHH
Q 022131 239 ACQYFVEMIE 248 (302)
Q Consensus 239 a~~~~~~~~~ 248 (302)
|...++++.+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777655
No 65
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.53 E-value=3e-13 Score=104.94 Aligned_cols=226 Identities=13% Similarity=0.050 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhc------CC-CcCHHHHHHHHHHHhccCC
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK------GI-CPTVATYSSVVKCLCSCGR 129 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~~ 129 (302)
...+++|++++++....+.+....++..+...+...|++++|...++++.+. +- +....++..+...|...|+
T Consensus 21 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 100 (283)
T 3edt_B 21 VPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100 (283)
T ss_dssp HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc
Confidence 5567778888887775443445678999999999999999999999998765 22 2345678899999999999
Q ss_pred HHHHHHHHHHHHHC------C-CCCChhhHHHHHHHHHccCCchHHHHHHHHHHhC------CCCCCCHHHHHHHHHHHH
Q 022131 130 IEDAEELLGEMVRN------G-VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED------GLCVPNMHSYNILIGMFM 196 (302)
Q Consensus 130 ~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~ 196 (302)
+++|...+++..+. . .+....++..+...+...|++++|...+++..+. +..+....++..+...+.
T Consensus 101 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 180 (283)
T 3edt_B 101 YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL 180 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999998764 1 1234677888899999999999999999998775 111334567888999999
Q ss_pred hcCCHHHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCC------HHHHHHHHHHHHHCCCCCchhhHHHHH
Q 022131 197 ALNRMDMVREIWNDVKGS-------GLGPD-LDSYTMLIHGLCEKQK------WKEACQYFVEMIEKGLLPQKVTFETLY 262 (302)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~li~~~~~~g~------~~~a~~~~~~~~~~~~~p~~~~~~~l~ 262 (302)
..|++++|...+++..+. ...+. ...+..+.......+. +..+...++.... ..+....++..+.
T Consensus 181 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la 259 (283)
T 3edt_B 181 KQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLG 259 (283)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 999999999999987753 11222 2333333333333222 2222222222111 1122345778888
Q ss_pred HHHhhcchHHHHHHHHHhccc
Q 022131 263 RGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~~~~ 283 (302)
..+...|++++|..++++..+
T Consensus 260 ~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 260 ALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999988654
No 66
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=4.4e-11 Score=101.59 Aligned_cols=265 Identities=11% Similarity=0.123 Sum_probs=175.2
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
|..++. +.+.|++++|..+|+++.+. .|-+...|..++..+.+ .+++++|..+|+++... .|+...
T Consensus 16 w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~----------~~~~~~a~~~~~ral~~--~p~~~l 81 (530)
T 2ooe_A 16 WSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIK----------AKNYDKVEKLFQRCLMK--VLHIDL 81 (530)
T ss_dssp HHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHTTT--CCCHHH
T ss_pred HHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhc--CCChHH
Confidence 555666 46789999999999999876 45567788999988888 77888999999998876 357777
Q ss_pred HHHHHHHH-HhcCCchhHHH----HHHHHHhc-CCC-cCHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHHCCC
Q 022131 82 FSIVLHVY-SRAHQPQLSLD----KLNFMKEK-GIC-PTVATYSSVVKCLCS---------CGRIEDAEELLGEMVRNGV 145 (302)
Q Consensus 82 ~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~ 145 (302)
|...+... ...|+.+.|.+ +|+..... |.. ++...|...+....+ .|+++.|..+|++..+...
T Consensus 82 w~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~ 161 (530)
T 2ooe_A 82 WKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM 161 (530)
T ss_dssp HHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh
Confidence 77766533 34567776655 56655443 433 245666666665543 5677777777777665211
Q ss_pred CCChhhHHH-----------------------------------------------------------------HHHHHH
Q 022131 146 CPSAETYNC-----------------------------------------------------------------FFKEYR 160 (302)
Q Consensus 146 ~~~~~~~~~-----------------------------------------------------------------l~~~~~ 160 (302)
.+....|.. .+....
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 000122211 111100
Q ss_pred cc----CCc----hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCC
Q 022131 161 GR----KDA----NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA-------LNRMD-------MVREIWNDVKGSGLGP 218 (302)
Q Consensus 161 ~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~ 218 (302)
.. ++. ..+..+|++..... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 00 111 13445555555543 4566677777776665 67776 8888888887631344
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCch--hhHHHHHHHHhhcchHHHHHHHHHhcccc
Q 022131 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK--VTFETLYRGLIQSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 219 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (302)
+...|..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|+.++|..++++..+.
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 6778888888888888899999988888873 4542 46777777778888888888888887664
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.52 E-value=6.1e-12 Score=102.39 Aligned_cols=230 Identities=8% Similarity=-0.026 Sum_probs=127.9
Q ss_pred HHhcCCcchHHHHHHHHHhC--CCccc--HHHHHHHHHHHHhcccCCcchhhHHHHHHHH-----------HHHHHHHhc
Q 022131 9 WCKINRIDMAERFLGEMIER--GVEPN--VVTYNVLLNGVCRRASLHPSERFEKTIRNAE-----------KVFDEMRVR 73 (302)
Q Consensus 9 ~~~~g~~~~a~~~~~~~~~~--~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~-----------~~~~~~~~~ 73 (302)
+.+.+++++|..+++++.+. .++.| ...|-.++..-...- .+.++.+. +.++.+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~--------~~~~~~~~~~~~e~~~~~~~~~~~i~~~ 93 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLM--------LEYLEPLEKMRIEEQPRLSDLLLEIDKK 93 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH--------HHHHGGGGGSCGGGSCCHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH--------HhhcCcccccccccccchhhHHHHHHhc
Confidence 45789999999999998765 23233 334444443322100 23333333 444444332
Q ss_pred CCCCCHHH------HHHHHHHHHhcCCchhHHHHHHHHHhc----CCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 022131 74 GIEPDVTS------FSIVLHVYSRAHQPQLSLDKLNFMKEK----GICP-TVATYSSVVKCLCSCGRIEDAEELLGEMVR 142 (302)
Q Consensus 74 ~~~~~~~~------~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 142 (302)
. ++... +......+...|++++|...+++..+. +-++ ...++..+...|...|++++|...+++..+
T Consensus 94 ~--~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~ 171 (383)
T 3ulq_A 94 Q--ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE 171 (383)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C--CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 11111 122445566677777777777776553 1111 234566666777777777777777766654
Q ss_pred CCCC-C-----ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022131 143 NGVC-P-----SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN----MHSYNILIGMFMALNRMDMVREIWNDVK 212 (302)
Q Consensus 143 ~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (302)
.... + ...+++.+...|...|++++|...+.+..+.....++ ..++..+...|...|++++|.+.+++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 251 (383)
T 3ulq_A 172 IYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251 (383)
T ss_dssp HHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3100 1 1345566666677777777777777666543110111 2356666667777777777777776665
Q ss_pred hC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 213 GS----GL-GPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 213 ~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
+. +. +....++..+...+...|++++|...+++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 51 22 22345566666777777777777777766543
No 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.51 E-value=3.2e-12 Score=92.60 Aligned_cols=167 Identities=13% Similarity=0.047 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 022131 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193 (302)
Q Consensus 114 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (302)
...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 45677788899999999999999999887643 467888999999999999999999999998875 667889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHH
Q 022131 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT 273 (302)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 273 (302)
.+...|++++|.+.++++.+. .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998876 34578889999999999999999999999998753 3456788889999999999999
Q ss_pred HHHHHHhccccC
Q 022131 274 WRRLKKKLDEES 285 (302)
Q Consensus 274 a~~~~~~~~~~~ 285 (302)
|...+++..+..
T Consensus 163 A~~~~~~~~~~~ 174 (186)
T 3as5_A 163 ALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC
Confidence 999999876643
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.50 E-value=3e-12 Score=104.19 Aligned_cols=224 Identities=11% Similarity=0.028 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcC--C----CcCHHHHHHHHHHHh
Q 022131 57 EKTIRNAEKVFDEMRVR----GIEP-DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG--I----CPTVATYSSVVKCLC 125 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~~ll~~~~ 125 (302)
.|++++|...|++..+. +-.+ ...++..+...+...|+++.|...+++..+.. . +....++..+...|.
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 195 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 78899999999998764 1111 34678899999999999999999999886541 1 112457888999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCC-C----ChhhHHHHHHHHHccCCchHHHHHHHHHHh-----CCCCCCCHHHHHHHHHHH
Q 022131 126 SCGRIEDAEELLGEMVRNGVC-P----SAETYNCFFKEYRGRKDANGAMKLYRQMKE-----DGLCVPNMHSYNILIGMF 195 (302)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~l~~~~ 195 (302)
..|++++|...+++..+.... + ...++..+...|...|++++|...+++..+ ... +....++..+...+
T Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~ 274 (383)
T 3ulq_A 196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL-PSLPQAYFLITQIH 274 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHH
Confidence 999999999999988754111 1 124788899999999999999999999887 321 23466788899999
Q ss_pred HhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCc-hhhHHHHHHHHhh
Q 022131 196 MALNRMDMVREIWNDVKGS----GLGPDLDSYTMLIHGLCEKQK---WKEACQYFVEMIEKGLLPQ-KVTFETLYRGLIQ 267 (302)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 267 (302)
.+.|++++|...+++..+. +.+.....+..+...+...|+ +++|+.++++. +..|+ ...+..+...|..
T Consensus 275 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 275 YKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHH
Confidence 9999999999999987653 111223345667778888888 77777777665 33333 3567778899999
Q ss_pred cchHHHHHHHHHhcccc
Q 022131 268 SDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 268 ~g~~~~a~~~~~~~~~~ 284 (302)
.|++++|...+++..+.
T Consensus 352 ~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 352 RKNFQKASAYFLKVEQV 368 (383)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999886653
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.50 E-value=1.2e-11 Score=93.14 Aligned_cols=196 Identities=10% Similarity=-0.012 Sum_probs=141.3
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 022131 77 PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156 (302)
Q Consensus 77 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 156 (302)
.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|+..+++..+... .+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 356788888888999999999999999988876546777777788889999999999999999887643 3567888888
Q ss_pred HHHHccCCchHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHH
Q 022131 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNM-------HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD---LDSYTML 226 (302)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 226 (302)
.++...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.+++..+. .|+ ...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 89999999999999999988875 4455 45777778888889999999999998875 454 5667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccC
Q 022131 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 227 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (302)
..++...|+. .++++...+ ..+...+.... ....+.+++|...+++..+..
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-----HHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 7777655443 333333321 11222232222 234455667777766655543
No 71
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=4.5e-13 Score=109.58 Aligned_cols=260 Identities=11% Similarity=-0.015 Sum_probs=190.3
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhC----CCcc-cHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcC--
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIER----GVEP-NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRG-- 74 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-- 74 (302)
|..+...+...|++++|...+++.... +..| ...++..+...+.. .|++++|...+++.....
T Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----------~g~~~~A~~~~~~al~~~~~ 119 (406)
T 3sf4_A 50 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV----------LGNFDEAIVCCQRHLDISRE 119 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHh
Confidence 556778899999999999999987543 2222 24567777778888 677788888877766531
Q ss_pred --C-CCCHHHHHHHHHHHHhcCC--------------------chhHHHHHHHHHhc----CC-CcCHHHHHHHHHHHhc
Q 022131 75 --I-EPDVTSFSIVLHVYSRAHQ--------------------PQLSLDKLNFMKEK----GI-CPTVATYSSVVKCLCS 126 (302)
Q Consensus 75 --~-~~~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~ 126 (302)
. .....++..+...+...|+ +++|...+++..+. +. +....++..+...|..
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 199 (406)
T 3sf4_A 120 LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL 199 (406)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 0 1124578889999999999 99999998877543 21 1124468888999999
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHh
Q 022131 127 CGRIEDAEELLGEMVRNGV-CPS----AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN----MHSYNILIGMFMA 197 (302)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 197 (302)
.|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+.....++ ..++..+...+..
T Consensus 200 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 279 (406)
T 3sf4_A 200 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 279 (406)
T ss_dssp HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence 9999999999998875411 112 347888889999999999999999988654210111 5677888999999
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-chhhHHHHHHHHhh
Q 022131 198 LNRMDMVREIWNDVKGSGL-GPD----LDSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLLP-QKVTFETLYRGLIQ 267 (302)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~ 267 (302)
.|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+. +..+ ...++..+...+..
T Consensus 280 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (406)
T 3sf4_A 280 LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMV 359 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 9999999999998765311 112 567888899999999999999999987653 2122 23556667777777
Q ss_pred cchH
Q 022131 268 SDML 271 (302)
Q Consensus 268 ~g~~ 271 (302)
.|+.
T Consensus 360 ~g~~ 363 (406)
T 3sf4_A 360 LGLS 363 (406)
T ss_dssp HHTT
T ss_pred hhHh
Confidence 7765
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.49 E-value=3.7e-12 Score=111.01 Aligned_cols=166 Identities=13% Similarity=0.103 Sum_probs=149.4
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 157 (302)
+...++.|...+.+.|++++|++.|++..+.... +..++..+..+|.+.|++++|+..|++..+... -+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 4678999999999999999999999999988533 688999999999999999999999999998743 46789999999
Q ss_pred HHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 022131 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237 (302)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 237 (302)
++...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.|++..+.. +-+...+..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999886 6778999999999999999999999999998862 346788999999999999999
Q ss_pred HHHHHHHHHHH
Q 022131 238 EACQYFVEMIE 248 (302)
Q Consensus 238 ~a~~~~~~~~~ 248 (302)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 73
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.47 E-value=4e-13 Score=110.27 Aligned_cols=239 Identities=10% Similarity=0.041 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCchhHHHHHHHHHhc--
Q 022131 35 VTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDV----TSFSIVLHVYSRAHQPQLSLDKLNFMKEK-- 108 (302)
Q Consensus 35 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 108 (302)
..+..+...+.. .|++++|+..|+++.+.+.. +. ..+..+...+...|++++|...+++..+.
T Consensus 49 ~~l~~~g~~~~~----------~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 117 (411)
T 4a1s_A 49 LELALEGERLCN----------AGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK 117 (411)
T ss_dssp HHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------hCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 344445556666 78899999999999987422 33 57888999999999999999999988654
Q ss_pred --C-CCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----C-CCCChhhHHHHHHHHHccCC----------------
Q 022131 109 --G-ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN----G-VCPSAETYNCFFKEYRGRKD---------------- 164 (302)
Q Consensus 109 --~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~---------------- 164 (302)
+ .+....++..+...|...|++++|...+++..+. + ......++..+...|...|+
T Consensus 118 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~ 197 (411)
T 4a1s_A 118 SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE 197 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH
Confidence 1 1224567888999999999999999999987754 1 11234578888889999999
Q ss_pred -chHHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcC
Q 022131 165 -ANGAMKLYRQMKED----GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL-GPD----LDSYTMLIHGLCEKQ 234 (302)
Q Consensus 165 -~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g 234 (302)
+++|...+.+..+. +.......++..+...+...|++++|...+++..+... .++ ...+..+...+...|
T Consensus 198 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (411)
T 4a1s_A 198 ALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLG 277 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCc
Confidence 99999988876543 11012234778888999999999999999998776311 012 237888899999999
Q ss_pred CHHHHHHHHHHHHHCCC----C-CchhhHHHHHHHHhhcchHHHHHHHHHhcccc
Q 022131 235 KWKEACQYFVEMIEKGL----L-PQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 235 ~~~~a~~~~~~~~~~~~----~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (302)
++++|...+++..+..- . ....++..+...+...|++++|...+++..+.
T Consensus 278 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999998875311 0 12467788889999999999999999886553
No 74
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.47 E-value=1.1e-11 Score=96.90 Aligned_cols=239 Identities=13% Similarity=0.037 Sum_probs=166.4
Q ss_pred chHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCc
Q 022131 16 DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95 (302)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 95 (302)
.+|.+++.+..+. .+++...| .++ +.. . .+++++|...|++. ...|...|++
T Consensus 2 ~~a~~~~~~a~k~-~~~~~~~~-~~~----~~~--~-----~~~~~~A~~~~~~a---------------~~~~~~~g~~ 53 (292)
T 1qqe_A 2 SDPVELLKRAEKK-GVPSSGFM-KLF----SGS--D-----SYKFEEAADLCVQA---------------ATIYRLRKEL 53 (292)
T ss_dssp CCHHHHHHHHHHH-SSCCCTHH-HHH----SCC--S-----HHHHHHHHHHHHHH---------------HHHHHHTTCT
T ss_pred CcHHHHHHHHHHH-hCcCCCcc-hhc----CCC--C-----CccHHHHHHHHHHH---------------HHHHHHcCCH
Confidence 4677888877765 23322233 332 210 0 23488888888776 3457788999
Q ss_pred hhHHHHHHHHHhc----CCCcC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC---C--ChhhHHHHHHHHHcc-CC
Q 022131 96 QLSLDKLNFMKEK----GICPT-VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC---P--SAETYNCFFKEYRGR-KD 164 (302)
Q Consensus 96 ~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~-~~ 164 (302)
++|...|.+..+. |-+++ ..+|+.+..+|.+.|++++|+..+++..+.... + ...++..+...|... |+
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~ 133 (292)
T 1qqe_A 54 NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD 133 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999887654 32222 567899999999999999999999988754111 1 145788888899996 99
Q ss_pred chHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcC
Q 022131 165 ANGAMKLYRQMKEDGLCVPN----MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL------DSYTMLIHGLCEKQ 234 (302)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g 234 (302)
+++|...|++..+......+ ..++..+...+.+.|++++|...+++..+....... ..|..+..++...|
T Consensus 134 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g 213 (292)
T 1qqe_A 134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT 213 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcC
Confidence 99999999998765210111 356888899999999999999999999885332221 15677888899999
Q ss_pred CHHHHHHHHHHHHHCCCCCchh------hHHHHHHHHh--hcchHHHHHHHHHhcccc
Q 022131 235 KWKEACQYFVEMIEKGLLPQKV------TFETLYRGLI--QSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 284 (302)
++++|...+++..+ +.|+.. .+..++.++. ..+++++|...++++.+.
T Consensus 214 ~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 214 DAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp CHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred CHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 99999999999865 334321 3444556664 456788888888776543
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=2.7e-11 Score=91.10 Aligned_cols=155 Identities=6% Similarity=-0.115 Sum_probs=131.6
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHH
Q 022131 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNIL 191 (302)
Q Consensus 112 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 191 (302)
.|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHH
Confidence 35678888999999999999999999999987654677888889999999999999999999999886 5677889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCc---hhhHHHH
Q 022131 192 IGMFMALNRMDMVREIWNDVKGSGLGPDL-------DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ---KVTFETL 261 (302)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l 261 (302)
...+...|++++|...+++..+.. +.+. ..|..+...+...|++++|+..|++..+. .|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 999999999999999999998852 2344 45778888889999999999999999774 565 4667777
Q ss_pred HHHHhhcchH
Q 022131 262 YRGLIQSDML 271 (302)
Q Consensus 262 ~~~~~~~g~~ 271 (302)
..++...|+.
T Consensus 160 ~~~~~~~~~~ 169 (228)
T 4i17_A 160 GVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777665
No 76
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.45 E-value=4.4e-11 Score=107.94 Aligned_cols=229 Identities=10% Similarity=0.052 Sum_probs=149.2
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 022131 5 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI 84 (302)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (302)
+...+...|.+++|..+|++... .....+.++. . .+++++|.++.++.. +..+|..
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~----------i~nldrAiE~Aervn------~p~vWsq 1110 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---H----------IGNLDRAYEFAERCN------EPAVWSQ 1110 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---H----------HhhHHHHHHHHHhcC------CHHHHHH
Confidence 34566778888888888887631 2222333333 3 667777777777542 4677778
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD 164 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (302)
+..++.+.|++++|.+.|.+. -|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|++.++
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcC
Confidence 888888888888888877553 266677778888888888888888887766653 233333346777777776
Q ss_pred chHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 022131 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244 (302)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 244 (302)
+++...+. . .++...+..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.++
T Consensus 1183 leele~fI----~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1183 LAELEEFI----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred HHHHHHHH----h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 66533332 1 345555666677777777777777777664 366666666666666666666665
Q ss_pred HHHHC------------------------CCCCchhhHHHHHHHHhhcchHHHHHHHHHhcc
Q 022131 245 EMIEK------------------------GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282 (302)
Q Consensus 245 ~~~~~------------------------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (302)
+..+. ++..++..+..++..|.+.|.+++|+.+++.-.
T Consensus 1246 KA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1246 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 54211 122345566677888888888888888886654
No 77
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=1.9e-12 Score=102.81 Aligned_cols=238 Identities=12% Similarity=0.034 Sum_probs=178.1
Q ss_pred HHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCchhHHHHHHHHHhc---
Q 022131 36 TYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPD----VTSFSIVLHVYSRAHQPQLSLDKLNFMKEK--- 108 (302)
Q Consensus 36 ~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 108 (302)
.+......+.. .|++++|...|+++.+.... + ...+..+...+...|++++|...+++..+.
T Consensus 7 ~l~~~g~~~~~----------~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 75 (338)
T 3ro2_A 7 ELALEGERLCK----------SGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 75 (338)
T ss_dssp HHHHHHHHHHH----------TTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------hccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Confidence 34444555666 78899999999999887422 3 367888999999999999999999887543
Q ss_pred -CCC-cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHccCC-----------------
Q 022131 109 -GIC-PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV-CPS----AETYNCFFKEYRGRKD----------------- 164 (302)
Q Consensus 109 -~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~----------------- 164 (302)
+.. ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 76 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 76 IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred ccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 212 2355788889999999999999999998765311 112 3477888889999999
Q ss_pred ---chHHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHH
Q 022131 165 ---ANGAMKLYRQMKED----GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL-GPD----LDSYTMLIHGLCE 232 (302)
Q Consensus 165 ---~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~ 232 (302)
+++|...+.+.... +..+.....+..+...+...|++++|...+++..+... .++ ..++..+...+..
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 235 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 89999888876543 11012245678888899999999999999998765310 111 3478888899999
Q ss_pred cCCHHHHHHHHHHHHHC----CCCC-chhhHHHHHHHHhhcchHHHHHHHHHhcccc
Q 022131 233 KQKWKEACQYFVEMIEK----GLLP-QKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 233 ~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (302)
.|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+.
T Consensus 236 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 236 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999988653 1111 1456778889999999999999999886543
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.44 E-value=1e-11 Score=108.28 Aligned_cols=166 Identities=12% Similarity=0.015 Sum_probs=148.5
Q ss_pred cHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCc
Q 022131 33 NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP 112 (302)
Q Consensus 33 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (302)
+...|+.+-..+.+ .|++++|++.|++..+.. +-+..++..+..++.+.|++++|+..|++..+... -
T Consensus 8 ~a~al~nLG~~~~~----------~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~ 75 (723)
T 4gyw_A 8 HADSLNNLANIKRE----------QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-T 75 (723)
T ss_dssp HHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred cHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence 46788999999999 889999999999999874 33678999999999999999999999999998863 3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 022131 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192 (302)
Q Consensus 113 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 192 (302)
+...|..+..++.+.|++++|++.|++..+... -+..+|..+..+|...|++++|+..|++..+.. +-+...+..+.
T Consensus 76 ~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~ 152 (723)
T 4gyw_A 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLA 152 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhh
Confidence 688999999999999999999999999998743 467899999999999999999999999999886 66788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 022131 193 GMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~ 213 (302)
.++...|++++|.+.++++.+
T Consensus 153 ~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 153 HCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHTTCCTTHHHHHHHHHH
T ss_pred hHHHhcccHHHHHHHHHHHHH
Confidence 999999999999998887654
No 79
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.43 E-value=3.1e-12 Score=99.16 Aligned_cols=161 Identities=13% Similarity=0.051 Sum_probs=125.6
Q ss_pred HHhcCCchhHHHHHHHHHhc-------CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC------CC-CCChhhHHH
Q 022131 89 YSRAHQPQLSLDKLNFMKEK-------GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN------GV-CPSAETYNC 154 (302)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 154 (302)
....|++++|...+++..+. ..+....++..+...|...|++++|...+++..+. +. +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34567888888888777552 22334667889999999999999999999998764 11 234567888
Q ss_pred HHHHHHccCCchHHHHHHHHHHhC------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHH
Q 022131 155 FFKEYRGRKDANGAMKLYRQMKED------GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS------GLGP-DLD 221 (302)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~ 221 (302)
+...|...|++++|...+.+.... ...+....++..+...+...|++++|...+++..+. +..| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999998765 110334677888999999999999999999988764 1122 356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 022131 222 SYTMLIHGLCEKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 222 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 249 (302)
++..+..++...|++++|...+++..+.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888999999999999999999998763
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=3.9e-11 Score=97.43 Aligned_cols=228 Identities=7% Similarity=-0.062 Sum_probs=158.0
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCC-cc----cHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc----CC-C
Q 022131 7 YGWCKINRIDMAERFLGEMIERGV-EP----NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR----GI-E 76 (302)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~-~ 76 (302)
..+...|++++|+..|++..+... .+ ...++..+...+.. .++++.|...+++..+. +. .
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~----------~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH----------MKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH----------cCCcHHHHHHHHHHHHHHHhCCCch
Confidence 345788999999999999876511 12 24567777778888 66777777777776542 11 1
Q ss_pred -CCHHHHHHHHHHHHhcCCchhHHHHHHHHHhc----CCC-cCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----CCC
Q 022131 77 -PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK----GIC-PTVATYSSVVKCLCSCGRIEDAEELLGEMVR-----NGV 145 (302)
Q Consensus 77 -~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~ 145 (302)
....+++.+...|...|++++|...+++..+. +.+ ....++..+..+|...|++++|...+++..+ ...
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 12457888899999999999999999887653 211 1234677888889999999999999988876 322
Q ss_pred CCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-
Q 022131 146 CPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC---VPNMHSYNILIGMFMALNR---MDMVREIWNDVKGSGLGP- 218 (302)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~- 218 (302)
....++..+...+...|++++|...+++..+.... +.....+..+...+...++ ..+|...+++. +..|
T Consensus 259 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~ 334 (378)
T 3q15_A 259 -LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAY 334 (378)
T ss_dssp -GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHH
T ss_pred -hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhH
Confidence 33667778888888889999998888888765321 1223345555556666677 66666666552 2222
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 219 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
....+..+...|...|++++|...|++..+
T Consensus 335 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 335 IEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234556677788888888888888887754
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=4.2e-11 Score=97.24 Aligned_cols=222 Identities=10% Similarity=-0.037 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHHHHhcCC-CC----CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcC----C-C-cCHHHHHHHHHHHh
Q 022131 57 EKTIRNAEKVFDEMRVRGI-EP----DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKG----I-C-PTVATYSSVVKCLC 125 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~-~~~~~~~~ll~~~~ 125 (302)
.|++++|+..|++..+... .+ ...++..+...|...|+++.|...+++..+.. . . ....+++.+...|.
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 6788999999999876421 12 24578889999999999999999999886541 1 1 12457888999999
Q ss_pred ccCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHccCCchHHHHHHHHHHh-----CCCCCCCHHHHHHHHHHH
Q 022131 126 SCGRIEDAEELLGEMVRN----GVC-PSAETYNCFFKEYRGRKDANGAMKLYRQMKE-----DGLCVPNMHSYNILIGMF 195 (302)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~l~~~~ 195 (302)
..|++++|...+++..+. +.. ....++..+...|...|++++|...+.+..+ .. +....++..+...+
T Consensus 194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~la~~~ 271 (378)
T 3q15_A 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP--DLLPKVLFGLSWTL 271 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC--hhHHHHHHHHHHHH
Confidence 999999999999987763 111 1235678888999999999999999999887 43 34477888999999
Q ss_pred HhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCc-hhhHHHHHHHHhh
Q 022131 196 MALNRMDMVREIWNDVKGSG----LGPDLDSYTMLIHGLCEKQK---WKEACQYFVEMIEKGLLPQ-KVTFETLYRGLIQ 267 (302)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 267 (302)
.+.|++++|...+++..+.. .+.....+..+...+...++ +.+|+..+++ .+..|+ ...+..+...|..
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHH
Confidence 99999999999999987632 22223455666666677788 7777777765 333333 3456678889999
Q ss_pred cchHHHHHHHHHhccc
Q 022131 268 SDMLRTWRRLKKKLDE 283 (302)
Q Consensus 268 ~g~~~~a~~~~~~~~~ 283 (302)
.|++++|...+++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988654
No 82
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.39 E-value=3.3e-10 Score=102.48 Aligned_cols=227 Identities=13% Similarity=0.139 Sum_probs=139.0
Q ss_pred hcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 022131 11 KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 90 (302)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (302)
..|++++|.++.++.. +..+|..+..++.. .|++++|+..|.+. -|...|..++.++.
T Consensus 1088 ~i~nldrAiE~Aervn------~p~vWsqLAKAql~----------~G~~kEAIdsYiKA------dD~say~eVa~~~~ 1145 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQ----------KGMVKEAIDSYIKA------DDPSSYMEVVQAAN 1145 (1630)
T ss_pred HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHh----------CCCHHHHHHHHHhc------CChHHHHHHHHHHH
Confidence 6677777777776542 35667777777777 66777777777553 26667777777777
Q ss_pred hcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHH
Q 022131 91 RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMK 170 (302)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (302)
+.|++++|.+.+....+.. ++....+.++.+|++.+++++..... + .++...|..+...|...|++++|..
T Consensus 1146 ~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~ 1216 (1630)
T 1xi4_A 1146 TSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKL 1216 (1630)
T ss_pred HcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 7777777777777666553 22223334666667666666433332 1 2344555556666666666666666
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------------------------CCCCCHHHHHHH
Q 022131 171 LYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS------------------------GLGPDLDSYTML 226 (302)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------~~~~~~~~~~~l 226 (302)
+|... ..|..+..++.+.|++++|.+.+++..+. ++..+...+..+
T Consensus 1217 ~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeel 1286 (1630)
T 1xi4_A 1217 LYNNV----------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEEL 1286 (1630)
T ss_pred HHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHH
Confidence 66653 24556666666666666666665544221 122355667788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHh--hcchHHHHHHHHH
Q 022131 227 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI--QSDMLRTWRRLKK 279 (302)
Q Consensus 227 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~ 279 (302)
+..|.+.|.+++|+.+++...... +-....|+-+...++ +.++..++.++|.
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 888999999999999998776432 223344544444444 3445555544443
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.36 E-value=4.1e-11 Score=92.10 Aligned_cols=192 Identities=6% Similarity=-0.015 Sum_probs=143.7
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC--CChhh
Q 022131 77 PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPT---VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC--PSAET 151 (302)
Q Consensus 77 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 151 (302)
.+...+-.+...+.+.|++++|...|+++.+.... + ...+..+..+|.+.|++++|...|++..+.... .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45677778888899999999999999999887422 3 678888999999999999999999999986321 22456
Q ss_pred HHHHHHHHHc--------cCCchHHHHHHHHHHhCCCCCCCHHHH-----------------HHHHHHHHhcCCHHHHHH
Q 022131 152 YNCFFKEYRG--------RKDANGAMKLYRQMKEDGLCVPNMHSY-----------------NILIGMFMALNRMDMVRE 206 (302)
Q Consensus 152 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a~~ 206 (302)
+..+..++.. .|++++|...|+++.+.. +.+.... ..+...|.+.|++++|..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 7777788888 999999999999998874 3333333 456788889999999999
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCchh----hHHHHHHHHhhcch
Q 022131 207 IWNDVKGSGLGP--DLDSYTMLIHGLCEK----------QKWKEACQYFVEMIEKGLLPQKV----TFETLYRGLIQSDM 270 (302)
Q Consensus 207 ~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~ 270 (302)
.|+++.+..... ....+..+..+|... |++++|...++++.+. .|+.. ....+-..+.+.++
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHHHH
Confidence 999988752111 245677778888766 8899999999999874 45543 33334444444454
Q ss_pred HHH
Q 022131 271 LRT 273 (302)
Q Consensus 271 ~~~ 273 (302)
+++
T Consensus 248 ~~~ 250 (261)
T 3qky_A 248 LEG 250 (261)
T ss_dssp HHT
T ss_pred hhh
Confidence 443
No 84
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.33 E-value=2e-10 Score=78.32 Aligned_cols=127 Identities=15% Similarity=0.197 Sum_probs=57.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 022131 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197 (302)
Q Consensus 118 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (302)
..+...+...|++++|..+++++.+... .+...+..+...+...|++++|...++++.... +.+...+..+...+..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHH
Confidence 3334444444444444444444443321 233344444444444444444444444444433 2334444444444555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 198 LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555444431 22344444445555555555555555554443
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.33 E-value=7.5e-10 Score=85.58 Aligned_cols=164 Identities=7% Similarity=0.016 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCC-CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-----Chhh
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGI-CPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP-----SAET 151 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~ 151 (302)
+..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~ 176 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEM 176 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHH
Confidence 344444555555566666666666665544432 124445555556666666666666666665543 23 2333
Q ss_pred HHHHHHHH--HccC--CchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C----CCC
Q 022131 152 YNCFFKEY--RGRK--DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS-----G----LGP 218 (302)
Q Consensus 152 ~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~----~~~ 218 (302)
...+..++ ...| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+. + -+-
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 44444332 2222 556666666665444 343222233333555566666666666544431 0 022
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 219 DLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 219 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
++.+...+|......|+ +|.+++.++.+
T Consensus 254 ~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 254 KPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 44444344444444454 55556655555
No 86
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.32 E-value=1.5e-10 Score=96.13 Aligned_cols=157 Identities=10% Similarity=0.034 Sum_probs=89.2
Q ss_pred HHHHHHHHHhccC---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc----CCchHHHHHHHHHHhCCCCCCCHHHH
Q 022131 116 TYSSVVKCLCSCG---RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR----KDANGAMKLYRQMKEDGLCVPNMHSY 188 (302)
Q Consensus 116 ~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (302)
.+..+...|...| +.++|+..|++..+.|. ++...+..+...|... +++++|...|++.. .+ +...+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g----~~~a~ 251 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG----YPASW 251 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG----STHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC----CHHHH
Confidence 5555556666666 66666666666666653 3444444555555443 56666666666665 32 23344
Q ss_pred HHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCchhhHHH
Q 022131 189 NILIGM-F--MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ-----KWKEACQYFVEMIEKGLLPQKVTFET 260 (302)
Q Consensus 189 ~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~p~~~~~~~ 260 (302)
..+... + ...++.++|.+.|++..+.| +...+..+...|. .| ++++|...|++.. . -+......
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~ 323 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYY 323 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHH
Confidence 444444 2 34566677777776666654 5555555655555 44 6777777766654 2 23444455
Q ss_pred HHHHHhh----cchHHHHHHHHHhccccCC
Q 022131 261 LYRGLIQ----SDMLRTWRRLKKKLDEESI 286 (302)
Q Consensus 261 l~~~~~~----~g~~~~a~~~~~~~~~~~~ 286 (302)
|...|.. ..+.++|..++++..+.|.
T Consensus 324 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 324 LGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 5544444 2367777777777666554
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.31 E-value=4.6e-10 Score=86.78 Aligned_cols=180 Identities=9% Similarity=0.041 Sum_probs=138.6
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHccCCchHHHHHHHHHH
Q 022131 98 SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV-CPSAETYNCFFKEYRGRKDANGAMKLYRQMK 176 (302)
Q Consensus 98 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (302)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778888877665 45666777888999999999999999999877653 2367788899999999999999999999998
Q ss_pred hCCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022131 177 EDGLCVP-----NMHSYNILIGMFM--ALN--RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247 (302)
Q Consensus 177 ~~~~~~~-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 247 (302)
+. .| +..+...++.++. ..| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 87 56 3666677776633 334 899999999999875 4553444445558999999999999999765
Q ss_pred HCC---------CCCchhhHHHHHHHHhhcchHHHHHHHHHhccccC
Q 022131 248 EKG---------LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 248 ~~~---------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (302)
+.- -+-|+.++..++......|+ ++.++++++.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 420 13356677667666666776 8888888887655
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.31 E-value=3.4e-10 Score=77.09 Aligned_cols=131 Identities=12% Similarity=0.119 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 022131 80 TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159 (302)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (302)
..+..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+.+. .+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHH
Confidence 356778888999999999999999998775 33677888899999999999999999999987643 4677888899999
Q ss_pred HccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022131 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214 (302)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (302)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++...
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999999998875 567888899999999999999999999998764
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.30 E-value=2.6e-10 Score=84.45 Aligned_cols=173 Identities=9% Similarity=0.029 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHH----------------HHHHHhccCCHHHHHHHHHHHHHC
Q 022131 80 TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSS----------------VVKCLCSCGRIEDAEELLGEMVRN 143 (302)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~ 143 (302)
..+-.....+...|++++|...|++..+... -+...+.. +..+|.+.|++++|+..|++..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3344455567788899999999998887642 24455666 888899999999999999999887
Q ss_pred CCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHH
Q 022131 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR--MDMVREIWNDVKGSGLGPDLD 221 (302)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 221 (302)
.+ .+...+..+..++...|++++|...|++..+.. +.+...+..+..++...|. .+.+...+..... ..|...
T Consensus 84 ~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 84 AP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 43 467888999999999999999999999999886 6678888888888766554 3445555555532 222223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHH
Q 022131 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260 (302)
Q Consensus 222 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 260 (302)
.+.....++...|++++|...|++.++ +.|+......
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~ 195 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 334455566778899999999999876 5677654443
No 90
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.29 E-value=2.3e-09 Score=79.57 Aligned_cols=176 Identities=10% Similarity=0.032 Sum_probs=140.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccC----CHHHHHHHH
Q 022131 62 NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG----RIEDAEELL 137 (302)
Q Consensus 62 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~ 137 (302)
+|++.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4677788877765 77888888889989999999999999998876 56777888888887 6 899999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHc----cCCchHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHh----cCCHHHHHHH
Q 022131 138 GEMVRNGVCPSAETYNCFFKEYRG----RKDANGAMKLYRQMKEDGLCVP--NMHSYNILIGMFMA----LNRMDMVREI 207 (302)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~a~~~ 207 (302)
++..+.| +...+..+...|.. .+++++|...|++..+.+ ++ +...+..|...|.. .++.++|...
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9998764 56777788888877 789999999999998875 21 26778888888888 7889999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCCC
Q 022131 208 WNDVKGSGLGPDLDSYTMLIHGLCEK-Q-----KWKEACQYFVEMIEKGL 251 (302)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~~ 251 (302)
|++..+. ..+...+..|...|... | ++++|...|++..+.|.
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9998875 23555677777777653 3 89999999998887764
No 91
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.27 E-value=9.8e-09 Score=85.27 Aligned_cols=223 Identities=13% Similarity=0.051 Sum_probs=121.8
Q ss_pred HHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCchhHHHHHHHHHhcCCC
Q 022131 36 TYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA----HQPQLSLDKLNFMKEKGIC 111 (302)
Q Consensus 36 ~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~ 111 (302)
.+..+-..|...|. ..+.++|++.|++..+.| .++...+..+...|... +++++|...|++.. .|
T Consensus 178 a~~~Lg~~~~~~g~-------~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g-- 246 (452)
T 3e4b_A 178 CYVELATVYQKKQQ-------PEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG-- 246 (452)
T ss_dssp HHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG--
T ss_pred HHHHHHHHHHHcCC-------cccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC--
Confidence 55555555555221 236677777777776665 33445445555555443 56667777776665 32
Q ss_pred cCHHHHHHHHHH-H--hccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC-----CchHHHHHHHHHHhCCCCCC
Q 022131 112 PTVATYSSVVKC-L--CSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK-----DANGAMKLYRQMKEDGLCVP 183 (302)
Q Consensus 112 ~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~ 183 (302)
+...+..+... + ...+++++|+.+|++..+.| +...+..+...|. .| ++++|...|++.. .|
T Consensus 247 -~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---- 316 (452)
T 3e4b_A 247 -YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---- 316 (452)
T ss_dssp -STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT----
T ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC----
Confidence 34444555544 3 34667777777777766654 4555555555555 33 6667777766665 32
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCch
Q 022131 184 NMHSYNILIGMFMA----LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE----KQKWKEACQYFVEMIEKGLLPQK 255 (302)
Q Consensus 184 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~ 255 (302)
+......|...|.. ..+.++|...|++..+.|. ......|...|.. ..+.++|...|+...+.|. ++.
T Consensus 317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a 392 (452)
T 3e4b_A 317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEA 392 (452)
T ss_dssp CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHH
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHH
Confidence 34455555555554 2366777777777666542 3344444444442 3467777777777666553 222
Q ss_pred hhHHHHHHHHhhcchHHHHHHHHHhccc
Q 022131 256 VTFETLYRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
......+......++..++.++.++..+
T Consensus 393 ~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 393 NDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 2222223333344455566665554433
No 92
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.27 E-value=2.1e-09 Score=86.96 Aligned_cols=227 Identities=11% Similarity=-0.012 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCchhHHHHHHHHHhcCC-CcC----HHHHHHHHHHHhcc
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDV----TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGI-CPT----VATYSSVVKCLCSC 127 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~ 127 (302)
.|++++|...+++........+. ..++.+...+...|++++|...+++..+... ..+ ..++..+...+...
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 67889999999998876422222 2566777888899999999999998765311 112 23456778889999
Q ss_pred CCHHHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCC--C-CCHHHHHHHHHHHHh
Q 022131 128 GRIEDAEELLGEMVRN----GVC--P-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC--V-PNMHSYNILIGMFMA 197 (302)
Q Consensus 128 ~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~~l~~~~~~ 197 (302)
|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... . ....++..+...+..
T Consensus 107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 186 (373)
T 1hz4_A 107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA 186 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Confidence 9999999999987753 221 2 2345666788899999999999999998765320 1 124567788889999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCC---chhhHHHHHHHHhhc
Q 022131 198 LNRMDMVREIWNDVKGSGLGPD-LDSYT-----MLIHGLCEKQKWKEACQYFVEMIEKGLLP---QKVTFETLYRGLIQS 268 (302)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~ 268 (302)
.|++++|...+++.......++ ...+. ..+..+...|++++|...+++..+....+ ....+..+...+...
T Consensus 187 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~ 266 (373)
T 1hz4_A 187 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 266 (373)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHc
Confidence 9999999999998765311111 11222 23344778999999999999876532111 122456777889999
Q ss_pred chHHHHHHHHHhccc
Q 022131 269 DMLRTWRRLKKKLDE 283 (302)
Q Consensus 269 g~~~~a~~~~~~~~~ 283 (302)
|++++|...+++..+
T Consensus 267 g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 267 GEFEPAEIVLEELNE 281 (373)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999887654
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.25 E-value=5.6e-10 Score=87.24 Aligned_cols=208 Identities=10% Similarity=-0.007 Sum_probs=149.0
Q ss_pred CcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHH
Q 022131 14 RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR----GIE-PDVTSFSIVLHV 88 (302)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~ 88 (302)
++++|.+.|+.. ...+.. .|++++|...|++.... |.+ ....+|+.+..+
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~----------~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~ 86 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRL----------RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKC 86 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHH----------TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHH----------cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 488888888776 234556 45555666665555432 222 238999999999
Q ss_pred HHhcCCchhHHHHHHHHHhcCC---Cc--CHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHCCCCC-C----hhhHHHHHH
Q 022131 89 YSRAHQPQLSLDKLNFMKEKGI---CP--TVATYSSVVKCLCSC-GRIEDAEELLGEMVRNGVCP-S----AETYNCFFK 157 (302)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~ 157 (302)
|.+.|++++|+..+++..+... .+ ...++..+...|... |++++|+..|++..+..... + ..++..+..
T Consensus 87 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~ 166 (292)
T 1qqe_A 87 FKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD 166 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 9999999999999998865421 11 145788899999996 99999999999987642111 1 356888899
Q ss_pred HHHccCCchHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHH
Q 022131 158 EYRGRKDANGAMKLYRQMKEDGLCVPNM-----HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL------DSYTML 226 (302)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l 226 (302)
.+...|++++|...|++..+.....+.. ..+..+..++...|++++|...+++..+. .|+. ..+..+
T Consensus 167 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l 244 (292)
T 1qqe_A 167 LKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSL 244 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHH
Confidence 9999999999999999998874212221 25777888899999999999999998763 3332 234455
Q ss_pred HHHHH--HcCCHHHHHHHHHHHHH
Q 022131 227 IHGLC--EKQKWKEACQYFVEMIE 248 (302)
Q Consensus 227 i~~~~--~~g~~~~a~~~~~~~~~ 248 (302)
+.++. ..+++++|+..|+++..
T Consensus 245 ~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 245 IDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHcCCHHHHHHHHHHhccCCc
Confidence 66664 45679999999877643
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.21 E-value=3.6e-09 Score=79.32 Aligned_cols=188 Identities=7% Similarity=0.014 Sum_probs=118.5
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCc--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh--hhHH
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP--TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA--ETYN 153 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 153 (302)
+...+..+...+.+.|++++|...|+++.+..... ....+..+..+|.+.|++++|+..|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44556667778888999999999999988764221 2356777888899999999999999998876432111 2344
Q ss_pred HHHHHHHc------------------cCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 022131 154 CFFKEYRG------------------RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215 (302)
Q Consensus 154 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (302)
.+..++.. .|++++|...|+++.+.. +-+...+....... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----------~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----------FLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----------HHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----------HHHHHH----
Confidence 44444443 344555555555555542 11211111110000 000000
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCch----hhHHHHHHHHhhcchHHHHHHHHHhccccCCC
Q 022131 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK----VTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287 (302)
Q Consensus 216 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 287 (302)
......+...+.+.|++++|+..|+++.+. .|+. ..+..+..++.+.|+.++|.+.++.+...+..
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 001124566778899999999999998874 3432 46777888999999999999999888776544
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.21 E-value=3.3e-08 Score=77.04 Aligned_cols=224 Identities=9% Similarity=0.052 Sum_probs=154.7
Q ss_pred HHhcCCc-chHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHH--HHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 022131 9 WCKINRI-DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK--TIRNAEKVFDEMRVRGIEPDVTSFSIV 85 (302)
Q Consensus 9 ~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (302)
..+.|.. ++|+++++.++..+ +-+...|+.--..+.. .+ .++++++.++.+...+.+ +..+|+.-
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~----------l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R 109 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKN----------LPNRNLYDELDWCEEIALDNEK-NYQIWNYR 109 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT----------CTTSCHHHHHHHHHHHHHHCTT-CCHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHH----------cccccHHHHHHHHHHHHHHCcc-cHHHHHHH
Confidence 3344544 57888888887763 2244566776666666 44 678888888888876433 55666655
Q ss_pred HHHH----Hhc---CCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHH--HHHHHHHHHHHCCCCCChhhHHHHH
Q 022131 86 LHVY----SRA---HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIE--DAEELLGEMVRNGVCPSAETYNCFF 156 (302)
Q Consensus 86 l~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~ 156 (302)
-..+ ... +++++++.+++.+.+...+ +..+|+.-...+.+.|.++ ++++.++++.+..+ -+...|+.-.
T Consensus 110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~ 187 (306)
T 3dra_A 110 QLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 5444 444 6778888888888877543 7777777777777777777 88888888887654 4677777666
Q ss_pred HHHHccCC------chHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHH
Q 022131 157 KEYRGRKD------ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM-VREIWNDVKGSG--LGPDLDSYTMLI 227 (302)
Q Consensus 157 ~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~li 227 (302)
..+...+. ++++++.+..+.... +-|...|+.+-..+.+.|+... +..+..++.+.+ -+.+...+..+.
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la 265 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLA 265 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 66666665 677888888777775 6777888777777777776433 455666555432 134667777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 022131 228 HGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~~~~ 248 (302)
.++.+.|+.++|.++++.+.+
T Consensus 266 ~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 266 KIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHh
Confidence 888888888888888888765
No 96
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.21 E-value=3.1e-09 Score=78.89 Aligned_cols=178 Identities=12% Similarity=0.052 Sum_probs=145.9
Q ss_pred chHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--
Q 022131 16 DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH-- 93 (302)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-- 93 (302)
.+|.+.|++..+.| ++..+..+-..+.. .+++++|+..|++..+.| +...+..|...|.. +
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~----------~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~ 65 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVS----------SGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQ 65 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STT
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCC
Confidence 36788888888775 67778888888888 889999999999999876 67788888888887 7
Q ss_pred --CchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHc----c
Q 022131 94 --QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS----CGRIEDAEELLGEMVRNGVC-PSAETYNCFFKEYRG----R 162 (302)
Q Consensus 94 --~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~ 162 (302)
++++|...|++..+.| +...+..+...|.. .+++++|+.+|++..+.|.. .++..+..|...|.. .
T Consensus 66 ~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~ 142 (212)
T 3rjv_A 66 QADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGP 142 (212)
T ss_dssp SCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSS
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCC
Confidence 8999999999998875 67788888888887 88999999999999987531 127788888888888 8
Q ss_pred CCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCCC
Q 022131 163 KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL-N-----RMDMVREIWNDVKGSGL 216 (302)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~ 216 (302)
+++++|...|++..+.+ .+...+..|...|... | +.++|...|+...+.|.
T Consensus 143 ~d~~~A~~~~~~A~~~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 143 EDDVKASEYFKGSSSLS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp CCHHHHHHHHHHHHHTS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 89999999999998872 3444677777777653 3 89999999999888753
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.21 E-value=1e-09 Score=85.51 Aligned_cols=163 Identities=10% Similarity=-0.026 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHH-
Q 022131 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNIL- 191 (302)
Q Consensus 113 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l- 191 (302)
+...+..+...+.+.|++++|...|++..+... .+...+..+...+...|++++|...++++.... |+.......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---QDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---CSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh---cchHHHHHHH
Confidence 334444455555555555555555555554422 234455555555555555555555555554442 232222111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CchhhHHHHHHHHhhcch
Q 022131 192 IGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL-PQKVTFETLYRGLIQSDM 270 (302)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~ 270 (302)
...+...++.+.|...+++.... -+.+...+..+...+...|++++|...+.++.+..-. .+...+..+...+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE-NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 12233444455555555555443 1234455555555555555555555555555543110 113345555555555555
Q ss_pred HHHHHHHHHh
Q 022131 271 LRTWRRLKKK 280 (302)
Q Consensus 271 ~~~a~~~~~~ 280 (302)
.++|...+++
T Consensus 271 ~~~a~~~~r~ 280 (287)
T 3qou_A 271 GDALASXYRR 280 (287)
T ss_dssp TCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 5555554443
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.20 E-value=5.2e-10 Score=97.65 Aligned_cols=185 Identities=14% Similarity=0.021 Sum_probs=147.3
Q ss_pred HhcCCchhHHHHHHHHH--------hcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 022131 90 SRAHQPQLSLDKLNFMK--------EKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG 161 (302)
Q Consensus 90 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (302)
...|++++|++.+++.. +.. +.+...+..+...+.+.|++++|+..|++..+... .+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 67889999999999988 432 34667888888999999999999999999887643 467888888899999
Q ss_pred cCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 022131 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241 (302)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 241 (302)
.|++++|...|++..+.. +.+...+..+..++.+.|++++ .+.|++..+.. +.+...|..+..++...|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998886 5677888899999999999999 99999988752 3467888899999999999999999
Q ss_pred HHHHHHHCCCCCc-hhhHHHHHHHHhhc--------chHHHHHHHHHhcc
Q 022131 242 YFVEMIEKGLLPQ-KVTFETLYRGLIQS--------DMLRTWRRLKKKLD 282 (302)
Q Consensus 242 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~ 282 (302)
.|++..+ +.|+ ...+..+..++... +++++|.+.+..+.
T Consensus 556 ~~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 556 TLDEVPP--TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHTSCT--TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHhhcc--cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 9998865 3554 45666667776553 34666666665553
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.20 E-value=6.6e-09 Score=77.86 Aligned_cols=170 Identities=11% Similarity=-0.005 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCH--HHHHHHHHHHhc------
Q 022131 57 EKTIRNAEKVFDEMRVRGIE-P-DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV--ATYSSVVKCLCS------ 126 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~------ 126 (302)
.|++++|+..|+++...... | ....+..+..++.+.|++++|...|+++.+....... ..+..+..++..
T Consensus 17 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~ 96 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSAL 96 (225)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhh
Confidence 67889999999999986422 1 1357888899999999999999999999887533111 244455555543
Q ss_pred ------------cCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 022131 127 ------------CGRIEDAEELLGEMVRNGVCPSA-ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193 (302)
Q Consensus 127 ------------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (302)
.|++++|...|+++.+.. |+. ..+...... ..+...+. .....+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~---------~~~~~~a~ 155 (225)
T 2yhc_A 97 QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA---------KYEYSVAE 155 (225)
T ss_dssp -----------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH---------HHHHHHHH
T ss_pred hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH---------HHHHHHHH
Confidence 578999999999999863 332 233221110 01111111 11234567
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 022131 194 MFMALNRMDMVREIWNDVKGSGLGPD----LDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 249 (302)
.+.+.|++++|...|+++.+. .|+ ...+..+..++.+.|++++|.+.++.+...
T Consensus 156 ~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 156 YYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 788899999999999998875 233 256778888999999999999999988775
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.20 E-value=2.8e-10 Score=99.40 Aligned_cols=171 Identities=9% Similarity=-0.096 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccC
Q 022131 57 EKTIRNAEKVFDEMR--------VRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 128 (302)
.+++++|++.+++.. +.. +.+...+..+...+.+.|++++|...++++.+... .+...|..+..++...|
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHcC
Confidence 567899999999988 432 44677889999999999999999999999988753 37889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 022131 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208 (302)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (302)
++++|+..|++..+... .+...+..+..++...|++++ .+.|++..+.. +.+...+..+..++.+.|++++|.+.|
T Consensus 482 ~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp CHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998743 467888999999999999999 99999999886 678889999999999999999999999
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHHcCC
Q 022131 209 NDVKGSGLGPD-LDSYTMLIHGLCEKQK 235 (302)
Q Consensus 209 ~~~~~~~~~~~-~~~~~~li~~~~~~g~ 235 (302)
++..+. .|+ ...+..+..++...++
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC----
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCC
Confidence 998875 454 5677777777766554
No 101
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.20 E-value=3.3e-09 Score=81.36 Aligned_cols=170 Identities=10% Similarity=-0.014 Sum_probs=134.9
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCC-CCHHH
Q 022131 112 PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS---AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCV-PNMHS 187 (302)
Q Consensus 112 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 187 (302)
.+...+..+...+.+.|++++|...|+++.+... .+ ...+..+..++...|++++|...|+++.+..... .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 4567778888899999999999999999998643 23 6778889999999999999999999999873101 22556
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHH
Q 022131 188 YNILIGMFMA--------LNRMDMVREIWNDVKGSGLGPDLDSY-----------------TMLIHGLCEKQKWKEACQY 242 (302)
Q Consensus 188 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~ 242 (302)
+..+..++.. .|++++|...|+++.+.. +.+.... ..+...|...|++++|+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 7778888888 999999999999998752 2222333 4567888999999999999
Q ss_pred HHHHHHCCCCCc----hhhHHHHHHHHhhc----------chHHHHHHHHHhccccC
Q 022131 243 FVEMIEKGLLPQ----KVTFETLYRGLIQS----------DMLRTWRRLKKKLDEES 285 (302)
Q Consensus 243 ~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~ 285 (302)
|+++.+. .|+ ...+..+..++... |++++|...++++.+..
T Consensus 171 ~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 171 YEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 9999874 343 34667777788766 89999999999987654
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.19 E-value=3.5e-10 Score=81.37 Aligned_cols=161 Identities=12% Similarity=0.066 Sum_probs=105.6
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HH
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE-YR 160 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 160 (302)
+..+...+.+.|++++|...+++..+.. +.+...+..+...+.+.|++++|+..+++..... |+...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4455666777888888888888776653 2356677778888888888888888888776543 233333222211 12
Q ss_pred ccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 022131 161 GRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP-DLDSYTMLIHGLCEKQKWKEA 239 (302)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a 239 (302)
..+...++...+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2223344677777777664 4567777777777778888888888887777653222 245677777777777777777
Q ss_pred HHHHHHHH
Q 022131 240 CQYFVEMI 247 (302)
Q Consensus 240 ~~~~~~~~ 247 (302)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.18 E-value=5.8e-09 Score=82.08 Aligned_cols=216 Identities=13% Similarity=0.077 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHHhc------CCCCCH----HHHHHHHHHHHhcCCchhHHHHHHHHHhc----CCC-cCHHHHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVR------GIEPDV----TSFSIVLHVYSRAHQPQLSLDKLNFMKEK----GIC-PTVATYSSVV 121 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~------~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll 121 (302)
.+++++|.+++++..+. +..++. ..|......|...|++++|...+.+..+. +-. .-..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67788888888877652 112342 36777888899999999999999887654 211 1245788899
Q ss_pred HHHhccCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCC--CC--CHHHHHHHH
Q 022131 122 KCLCSCGRIEDAEELLGEMVRN----GVCP-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC--VP--NMHSYNILI 192 (302)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~~l~ 192 (302)
..|.+.|++++|+..|++..+. |-.. ...++..+...|.. |++++|+..+++..+.... .+ ...++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 9999999999999999987653 2111 14577788888888 9999999999988764210 11 146788889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCch------hhHHHH
Q 022131 193 GMFMALNRMDMVREIWNDVKGS----GLGPD-LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK------VTFETL 261 (302)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~l 261 (302)
..+.+.|++++|...|++.... +..++ ...+..+..++...|++++|...|++.. . .|+. .....+
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l 239 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDL 239 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHH
Confidence 9999999999999999998763 11111 2356667777888899999999999987 3 3322 234445
Q ss_pred HHHHhhcchHHHHHHH
Q 022131 262 YRGLIQSDMLRTWRRL 277 (302)
Q Consensus 262 ~~~~~~~g~~~~a~~~ 277 (302)
+.++ ..|+.+.+.++
T Consensus 240 ~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 240 LQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHH-HTTCHHHHHHH
T ss_pred HHHH-HhcCHHHHHHH
Confidence 5555 56776666663
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.17 E-value=3.3e-09 Score=78.49 Aligned_cols=167 Identities=10% Similarity=0.049 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHH----------------HHHHHHccCCchHHHHHHHHHHh
Q 022131 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC----------------FFKEYRGRKDANGAMKLYRQMKE 177 (302)
Q Consensus 114 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~ 177 (302)
...+......+...|++++|+..|++..+..+ .+...|.. +..++...|++++|...+++..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445556677889999999999999988632 24556666 88899999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCch
Q 022131 178 DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK--WKEACQYFVEMIEKGLLPQK 255 (302)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~ 255 (302)
.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..+|...|+ ...+...+..... ..|..
T Consensus 83 ~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 157 (208)
T 3urz_A 83 KA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQ 157 (208)
T ss_dssp HC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHH
T ss_pred HC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchh
Confidence 86 6788999999999999999999999999999863 3467888888888866554 4455556655532 22333
Q ss_pred hhHHHHHHHHhhcchHHHHHHHHHhccccCC
Q 022131 256 VTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286 (302)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 286 (302)
..+.....++...|++++|...+++..+...
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3444455667788999999999999876544
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.16 E-value=2.1e-09 Score=92.11 Aligned_cols=154 Identities=8% Similarity=-0.059 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 136 (302)
.+++++|++.|++..+.. +.+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 578899999999988764 3367889999999999999999999999998875 33688899999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 022131 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL---NRMDMVREIWNDVKG 213 (302)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 213 (302)
+++..+... .+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++..+
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999988743 467888999999999999999999999998885 56788889999999999 999999999999888
Q ss_pred CC
Q 022131 214 SG 215 (302)
Q Consensus 214 ~~ 215 (302)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 63
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.15 E-value=1.3e-09 Score=76.15 Aligned_cols=139 Identities=6% Similarity=-0.101 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEEL 136 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 136 (302)
.+++++|++.++...... +-+...+-.+...|.+.|++++|++.|++..+... -+..+|..+..+|.+.|++++|+..
T Consensus 10 ~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHHH
Confidence 788888888888876542 11334556678888888888888888888887753 3677888888888888888888888
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHH-HHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 022131 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL-YRQMKEDGLCVPNMHSYNILIGMFMALNR 200 (302)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (302)
|++..+... -+..++..+...|...|+.+++... +++..+.. |.+..+|......+...|+
T Consensus 88 ~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 88 YRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCc
Confidence 888887643 3567788888888888887765554 46666654 5566677766666665553
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.15 E-value=2.5e-09 Score=83.34 Aligned_cols=168 Identities=10% Similarity=-0.038 Sum_probs=139.0
Q ss_pred CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHH-
Q 022131 76 EPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNC- 154 (302)
Q Consensus 76 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 154 (302)
+.+...+..+...+.+.|++++|...|++..+... -+...+..+...+.+.|++++|...++++.... |+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 44667788888999999999999999999988753 377889999999999999999999999987753 44443332
Q ss_pred HHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHc
Q 022131 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLG-PDLDSYTMLIHGLCEK 233 (302)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 233 (302)
....+...++.+++...+++..... +.+...+..+...+...|++++|...+.++.+.... .+...+..+...+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 2334667788888999999998886 778899999999999999999999999999886321 1267899999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 022131 234 QKWKEACQYFVEMIE 248 (302)
Q Consensus 234 g~~~~a~~~~~~~~~ 248 (302)
|+.++|...+++...
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999987653
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.15 E-value=2.7e-10 Score=79.68 Aligned_cols=112 Identities=7% Similarity=-0.041 Sum_probs=52.8
Q ss_pred HHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHH
Q 022131 89 YSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGA 168 (302)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 168 (302)
+...|++++|+..++...... +.+...+..+...|.+.|++++|+..|++..+... -+..+|..+..+|...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHH
Confidence 334444555555554443321 11222334445555555555555555555554422 2444555555555555555555
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 022131 169 MKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204 (302)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (302)
...|++..+.. +.+...+..+...+.+.|+.++|
T Consensus 85 ~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 85 VECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHH
Confidence 55555555443 33444555555555555554443
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.14 E-value=2.6e-09 Score=91.44 Aligned_cols=153 Identities=7% Similarity=-0.072 Sum_probs=115.8
Q ss_pred cCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHH
Q 022131 92 AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKL 171 (302)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 171 (302)
.|++++|.+.+++..+.. +.+...+..+...+.+.|++++|...+++..+... .+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999999887764 33678888999999999999999999999988743 4678888899999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Q 022131 172 YRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK---QKWKEACQYFVEMIE 248 (302)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~ 248 (302)
+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+++..+
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99998875 5678889999999999999999999999988762 34678888899999999 999999999999877
Q ss_pred C
Q 022131 249 K 249 (302)
Q Consensus 249 ~ 249 (302)
.
T Consensus 157 ~ 157 (568)
T 2vsy_A 157 Q 157 (568)
T ss_dssp H
T ss_pred c
Confidence 5
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.11 E-value=4.6e-08 Score=76.23 Aligned_cols=218 Identities=8% Similarity=-0.020 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CchhHHHHHHHHHhcCCCcCHHHHHHHHHHH----hcc---CCHH
Q 022131 61 RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH--QPQLSLDKLNFMKEKGICPTVATYSSVVKCL----CSC---GRIE 131 (302)
Q Consensus 61 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---~~~~ 131 (302)
++|+++++.+...+ +-+...|+.--..+...+ +++++++.++.+.....+ +..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 67999999999875 336778888888888888 999999999999988644 556666555555 444 7899
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCch--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC------HHH
Q 022131 132 DAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN--GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR------MDM 203 (302)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~ 203 (302)
+++.+++++.+... -+..+|+.-...+...|.++ ++++.+.++.+.. +.|...|+.......+.+. +++
T Consensus 128 ~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 99999999998754 58888988888888889888 9999999999987 6888999888777777776 889
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCchhhHHHHHHHHhhcchHHHHHHHHHh
Q 022131 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE-ACQYFVEMIEKG--LLPQKVTFETLYRGLIQSDMLRTWRRLKKK 280 (302)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (302)
+.+.++++.... +-|...|+..-..+.+.|+... +..+..++.+.+ -..++..+..+..++.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999988763 4588899988888888887444 555666654432 134667888899999999999999999999
Q ss_pred cccc
Q 022131 281 LDEE 284 (302)
Q Consensus 281 ~~~~ 284 (302)
+.+.
T Consensus 284 l~~~ 287 (306)
T 3dra_A 284 LKSK 287 (306)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 8753
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.11 E-value=2.8e-08 Score=73.54 Aligned_cols=124 Identities=10% Similarity=0.011 Sum_probs=64.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 022131 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL 198 (302)
Q Consensus 119 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (302)
.+...+...|++++|...|++.. .|+...+..+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHc
Confidence 34444445555555555554442 2344455555555555555555555555555443 34445555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 199 NRMDMVREIWNDVKGSGLG--------------P-DLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
|++++|.+.+++..+.... | ....+..+..++...|++++|...|++..+
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555555555543110 0 114555566666666666666666666654
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.09 E-value=2.8e-09 Score=76.57 Aligned_cols=151 Identities=11% Similarity=0.013 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHH-HhccCCHHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKC-LCSCGRIEDAEE 135 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~ 135 (302)
.|++++|...|++..+.. +.+...+..+...+...|++++|...++...+... +...+...... +...+...+|..
T Consensus 19 ~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~a~~ 95 (176)
T 2r5s_A 19 QGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQAAESPELK 95 (176)
T ss_dssp TTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhcccchHHH
Confidence 344444444444444331 11334444444444445555555544444433321 22221111111 111111222444
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022131 136 LLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211 (302)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (302)
.+++..+..+ .+...+..+...+...|++++|...|+++.+......+...+..+...+...|+.++|...|++.
T Consensus 96 ~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 96 RLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 4444444321 23444444455555555555555555555444210011334444455555555555555554443
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.07 E-value=8.3e-09 Score=81.19 Aligned_cols=217 Identities=9% Similarity=0.003 Sum_probs=150.0
Q ss_pred hcCCcchHHHHHHHHHhC------CCcccH----HHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc----CCC
Q 022131 11 KINRIDMAERFLGEMIER------GVEPNV----VTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR----GIE 76 (302)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~------~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~ 76 (302)
..|++++|.+++++..+. +..++. ..|+.....|.. .+++++|...|.+.... +-.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----------~g~~~~A~~~~~~al~~~~~~~~~ 72 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKN----------AKQLEQAKDAYLQEAEAHANNRSL 72 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHcCCH
Confidence 357788898888877652 112332 245555566666 66777888777776543 111
Q ss_pred -CCHHHHHHHHHHHHhcCCchhHHHHHHHHHhc----CCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---
Q 022131 77 -PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK----GICP-TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP--- 147 (302)
Q Consensus 77 -~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--- 147 (302)
.-..+|+.+...|.+.|++++|...+++..+. |-.. ...++..+...|.. |++++|+..|++..+.....
T Consensus 73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~ 151 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL 151 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence 12457888999999999999999999987654 2111 24578888899988 99999999999887641111
Q ss_pred --ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--
Q 022131 148 --SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC---VPN-MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD-- 219 (302)
Q Consensus 148 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 219 (302)
...++..+...|...|++++|...|++..+.... .++ ...+..+..++...|++++|...|++.. . .|+
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~ 228 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFS 228 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTST
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCC
Confidence 1467888899999999999999999998764210 111 2356677778888899999999999988 4 232
Q ss_pred -H---HHHHHHHHHHHHcCCHHHHHHH
Q 022131 220 -L---DSYTMLIHGLCEKQKWKEACQY 242 (302)
Q Consensus 220 -~---~~~~~li~~~~~~g~~~~a~~~ 242 (302)
. .....++.++ ..|+.+.+.++
T Consensus 229 ~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 229 GSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp TSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 1 2344455554 56777666653
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.06 E-value=4.8e-08 Score=76.28 Aligned_cols=162 Identities=9% Similarity=-0.081 Sum_probs=85.3
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCC-CcCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----hhhHHHH
Q 022131 86 LHVYSRAHQPQLSLDKLNFMKEKGI-CPTV----ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC-PS----AETYNCF 155 (302)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 155 (302)
+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|+..+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666677777776666655321 1121 12223455555566666666666666653211 11 1245666
Q ss_pred HHHHHccCCchHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHH
Q 022131 156 FKEYRGRKDANGAMKLYRQMKED-----GLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS----GLGPD-LDSYTM 225 (302)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ 225 (302)
...|...|++++|...++++.+. +..+....++..+...|.+.|++++|...+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66666666666666666666521 100111234556666666666666666666654431 11111 445555
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHH
Q 022131 226 LIHGLCEKQ-KWKEACQYFVEMI 247 (302)
Q Consensus 226 li~~~~~~g-~~~~a~~~~~~~~ 247 (302)
+..++...| ++++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 666666666 3466666666554
No 115
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.03 E-value=7.7e-08 Score=83.22 Aligned_cols=223 Identities=9% Similarity=-0.011 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHH-HHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHH
Q 022131 60 IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSL-DKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLG 138 (302)
Q Consensus 60 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 138 (302)
.+.+..+|++..... +-+...|-..+..+...|+.++|. ++|++..... +.+...|...+...-+.|+++.|..+|+
T Consensus 325 ~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iye 402 (679)
T 4e6h_A 325 KARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTIL 402 (679)
T ss_dssp HHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 344567788887763 447788888888888999999997 9999998753 4577778888999999999999999999
Q ss_pred HHHHCCC---------CCC------------hhhHHHHHHHHHccCCchHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHH
Q 022131 139 EMVRNGV---------CPS------------AETYNCFFKEYRGRKDANGAMKLYRQMKED-GLCVPNMHSYNILIGMFM 196 (302)
Q Consensus 139 ~~~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 196 (302)
++.+... .|+ ...|...++...+.|+.+.|..+|....+. + ......|...+..-.
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~--~~~~~lyi~~A~lE~ 480 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK--LVTPDIYLENAYIEY 480 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG--GSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHH
Confidence 9886410 132 346888888888899999999999999887 4 233344444333333
Q ss_pred hc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--chhhHHHHHHHHhhcchHHH
Q 022131 197 AL-NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP--QKVTFETLYRGLIQSDMLRT 273 (302)
Q Consensus 197 ~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 273 (302)
+. ++.+.|..+|+...+. .+-+...|...+......|+.+.|..+|++.......+ ....|...++--.+.|+.+.
T Consensus 481 ~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 481 HISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred HhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44 4589999999998886 45577778888888888999999999999998753211 33577778887788999999
Q ss_pred HHHHHHhccccCCC
Q 022131 274 WRRLKKKLDEESIT 287 (302)
Q Consensus 274 a~~~~~~~~~~~~~ 287 (302)
+..+.+++.+....
T Consensus 560 ~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 560 VRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCC
Confidence 99999998876644
No 116
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.02 E-value=8.1e-08 Score=83.08 Aligned_cols=235 Identities=10% Similarity=-0.026 Sum_probs=174.6
Q ss_pred chHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 022131 16 DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAE-KVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ 94 (302)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 94 (302)
+++..+|++++.. .+-+...|......+.. .++.++|. ++|++.... .+.+...|-..+...-+.|+
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~----------~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~ 393 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGE----------KNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTK 393 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHH----------HSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHh----------cCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCC
Confidence 3456778887765 34466778777777776 44556776 899998875 34566677888888899999
Q ss_pred chhHHHHHHHHHhcCC---------Cc------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHH
Q 022131 95 PQLSLDKLNFMKEKGI---------CP------------TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153 (302)
Q Consensus 95 ~~~a~~~~~~~~~~~~---------~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (302)
++.|.++|+.+.+... .| ...+|...+....+.|..+.|..+|.+..+.-.......|.
T Consensus 394 ~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi 473 (679)
T 4e6h_A 394 IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYL 473 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHH
Confidence 9999999999876410 13 23468888888889999999999999998761112334444
Q ss_pred HHHHHHHcc-CCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 022131 154 CFFKEYRGR-KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP--DLDSYTMLIHGL 230 (302)
Q Consensus 154 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~ 230 (302)
..+..-.+. ++.+.|..+|+...+.- +.+...+...++.....|+.+.|..+|+........+ ....|...+..-
T Consensus 474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE 551 (679)
T 4e6h_A 474 ENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFE 551 (679)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 333333343 55899999999998873 5677778888888888999999999999998863322 356788888888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHh
Q 022131 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 266 (302)
Q Consensus 231 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 266 (302)
...|+.+.+..+.+++.+. .|+......+++-|.
T Consensus 552 ~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 552 SKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhc
Confidence 8999999999999999874 566666666655554
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.01 E-value=5.7e-07 Score=70.95 Aligned_cols=223 Identities=10% Similarity=0.093 Sum_probs=147.2
Q ss_pred hcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 022131 11 KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEK-TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY 89 (302)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 89 (302)
+.+..++|+++++.++..+ +-+..+|+.--..+.. .+ .++++++.++.+..... -+..+|+.-...+
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~----------l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL 133 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTS----------LNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLL 133 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----------TTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHH----------hhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 3344567888888887763 2245567776666665 44 47788888888887753 3677787777766
Q ss_pred Hhc-C-CchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHH--------HHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 022131 90 SRA-H-QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIE--------DAEELLGEMVRNGVCPSAETYNCFFKEY 159 (302)
Q Consensus 90 ~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (302)
... + ++++++++++.+.+...+ +..+|+.-...+.+.|.++ ++++.++++.+..+ -|...|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 666 6 778888888888876533 6777776665555555555 78888888887654 4777787777777
Q ss_pred HccCC-------chHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHH
Q 022131 160 RGRKD-------ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM--------------------DMVREIWNDVK 212 (302)
Q Consensus 160 ~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~ 212 (302)
.+.+. ++++++.+.+..... +-|...|+-+-..+.+.|.. .....+...+.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMP 289 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHH
Confidence 77665 467777777777765 66777777766666665543 22333333332
Q ss_pred hCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 022131 213 GSG-----LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 213 ~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 249 (302)
..+ -.++......++..|...|+.++|.++++.+.+.
T Consensus 290 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 290 SDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp C-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 221 1356677777888888888888888888887643
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.00 E-value=9.6e-08 Score=74.55 Aligned_cols=208 Identities=9% Similarity=0.042 Sum_probs=142.6
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHH---HHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 022131 67 FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA---TYSSVVKCLCSCGRIEDAEELLGEMVRN 143 (302)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 143 (302)
+.++......|+..+...+...+.-.- . .+.......+.. .+...+..+...|++++|..++++..+.
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~-----~----~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPI-----I----HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCT-----H----HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCH-----H----HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 344443335677777777776664221 1 111111122222 2334467788999999999999999875
Q ss_pred CC-CCCh----hhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 022131 144 GV-CPSA----ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN----MHSYNILIGMFMALNRMDMVREIWNDVKG- 213 (302)
Q Consensus 144 ~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 213 (302)
.. .|+. ..+..+...+...+++++|...+.+........++ ..+++.+...|...|++++|...++++.+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32 1221 13334666777888999999999999885321333 33689999999999999999999999874
Q ss_pred ---C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCc-hhhHHHHHHHHhhcc-hHHHHHHHHHhcc
Q 022131 214 ---S-GLGP-DLDSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLLPQ-KVTFETLYRGLIQSD-MLRTWRRLKKKLD 282 (302)
Q Consensus 214 ---~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~ 282 (302)
. +..+ ...++..+...|...|++++|...+++..+. +..+. ..++..+..++...| .+++|.+.+++..
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 1122 2347888999999999999999999988653 22222 567888889999999 4689988887754
Q ss_pred c
Q 022131 283 E 283 (302)
Q Consensus 283 ~ 283 (302)
+
T Consensus 265 ~ 265 (293)
T 3u3w_A 265 F 265 (293)
T ss_dssp H
T ss_pred H
Confidence 3
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.00 E-value=5.3e-08 Score=72.04 Aligned_cols=127 Identities=11% Similarity=-0.042 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (302)
.+..+...+...|++++|...+++.. .|+...+..+...+.+.|++++|...+++..+... .+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 44556777888999999999998773 56788999999999999999999999999887643 46788889999999
Q ss_pred ccCCchHHHHHHHHHHhCCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022131 161 GRKDANGAMKLYRQMKEDGLCVPN----------------MHSYNILIGMFMALNRMDMVREIWNDVKGS 214 (302)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (302)
..|++++|...+++..+.. +.+ ...+..+..++...|++++|...+++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC--CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999998864 222 377888999999999999999999999885
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.00 E-value=9.1e-08 Score=74.66 Aligned_cols=169 Identities=9% Similarity=0.021 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCC--CCC--
Q 022131 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS-----AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC--VPN-- 184 (302)
Q Consensus 114 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~-- 184 (302)
...+...+..+...|++++|.+.+++..+...... ...+..+...+...|++++|...+.+..+.... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34556677788889999999999988877532211 122344556677888999999999988754211 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCC-
Q 022131 185 MHSYNILIGMFMALNRMDMVREIWNDVKG---S-GLGP--DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG----LLP- 253 (302)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~p- 253 (302)
..+++.+...|...|++++|...+++..+ . +..+ ...++..+...|...|++++|+..+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45788888999999999999999988763 2 1111 12578888899999999999999999886531 111
Q ss_pred chhhHHHHHHHHhhcchHHHH-HHHHHhcc
Q 022131 254 QKVTFETLYRGLIQSDMLRTW-RRLKKKLD 282 (302)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 282 (302)
-..++..+..++...|+.++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 146778888889999999988 66666543
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.99 E-value=1.5e-07 Score=73.40 Aligned_cols=170 Identities=9% Similarity=-0.106 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC---CC--
Q 022131 79 VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPT-----VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC---PS-- 148 (302)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~-- 148 (302)
...+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|+..+++..+.... +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 44556677888999999999999998877643211 123445666778889999999999998864221 11
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHHHHH---hCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-
Q 022131 149 AETYNCFFKEYRGRKDANGAMKLYRQMK---EDGLCVP--NMHSYNILIGMFMALNRMDMVREIWNDVKGS----GLGP- 218 (302)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 218 (302)
..+++.+...|...|++++|...+.+.. +.....+ ...++..+...|...|++++|...+++..+. +...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4578899999999999999999999987 3221011 1258889999999999999999999987653 1111
Q ss_pred CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 022131 219 DLDSYTMLIHGLCEKQKWKEA-CQYFVEMIE 248 (302)
Q Consensus 219 ~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~ 248 (302)
-..+|..+..+|...|++++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 157788899999999999999 777887653
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.98 E-value=6e-08 Score=68.53 Aligned_cols=93 Identities=13% Similarity=0.024 Sum_probs=38.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 022131 118 SSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA 197 (302)
Q Consensus 118 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (302)
..+...+...|++++|...|++..+... .+..++..+...+...|++++|...+.+..+.. +.+...+..+..++..
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHH
Confidence 3334444444444444444444443321 233334444444444444444444444444332 2333344444444444
Q ss_pred cCCHHHHHHHHHHHHh
Q 022131 198 LNRMDMVREIWNDVKG 213 (302)
Q Consensus 198 ~~~~~~a~~~~~~~~~ 213 (302)
.|++++|...+++..+
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444443
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.98 E-value=1.7e-08 Score=72.40 Aligned_cols=119 Identities=9% Similarity=0.072 Sum_probs=54.8
Q ss_pred hcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHccCCc--hH
Q 022131 91 RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE-YRGRKDA--NG 167 (302)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 167 (302)
..|++++|...++...+.. +.+...+..+...|...|++++|...|++..+... .+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHH
Confidence 3445555555555554443 22444555555555555555555555555544321 233444444444 4444554 55
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022131 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
|...+++..+.. +.+...+..+...+...|++++|...++++.+
T Consensus 100 A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555555554443 33344444444444455555555555544444
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.97 E-value=7.6e-08 Score=67.96 Aligned_cols=131 Identities=12% Similarity=0.032 Sum_probs=107.5
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 022131 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228 (302)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 228 (302)
...+..+...+...|++++|...+.+..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 4567777888899999999999999998875 5678899999999999999999999999988863 456788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCchhhHHH--HHHHHhhcchHHHHHHHHHhccc
Q 022131 229 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFET--LYRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 229 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
++...|++++|...+++..+.. +.+...+.. ....+...|++++|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999998752 223344433 34447788999999999877543
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.94 E-value=1.3e-08 Score=78.96 Aligned_cols=195 Identities=8% Similarity=-0.031 Sum_probs=134.2
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 157 (302)
+...+..+...+.+.|++++|...|++..+... .+...+..+..+|.+.|++++|+..+++..+... .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 567788888999999999999999999988753 3788899999999999999999999999988743 46788899999
Q ss_pred HHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 022131 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWK 237 (302)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 237 (302)
++...|++++|...|.+..+.. +.+...+...+....+. ..+. -+........+.+......+.. + ..|+.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 9999999999999999887653 11111111112211111 1111 1222223334445555444433 2 368899
Q ss_pred HHHHHHHHHHHCCCCCchhhH-HHHHHHHhhc-chHHHHHHHHHhcccc
Q 022131 238 EACQYFVEMIEKGLLPQKVTF-ETLYRGLIQS-DMLRTWRRLKKKLDEE 284 (302)
Q Consensus 238 ~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~-g~~~~a~~~~~~~~~~ 284 (302)
+|++.+++..+. .|+.... ..+...+.+. +.++++.++|.+..+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999988887653 5554333 3333334444 6788999999988764
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.94 E-value=1.2e-07 Score=65.93 Aligned_cols=102 Identities=9% Similarity=0.052 Sum_probs=73.5
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 022131 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228 (302)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 228 (302)
...+..+...+...|++++|...|+++.... +.+...|..+..++...|++++|...|++..... +.+...|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 4456666667777777788887777777765 5667777777777777888888888887777652 335667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCch
Q 022131 229 GLCEKQKWKEACQYFVEMIEKGLLPQK 255 (302)
Q Consensus 229 ~~~~~g~~~~a~~~~~~~~~~~~~p~~ 255 (302)
+|...|++++|...|++..+. .|+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCH
Confidence 777888888888888777763 4554
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.92 E-value=9.8e-08 Score=63.69 Aligned_cols=98 Identities=12% Similarity=0.134 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 022131 79 VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158 (302)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (302)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...++++.+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 3445555555555666666666666555543 22444555555555555555555555555554422 234445555555
Q ss_pred HHccCCchHHHHHHHHHHhC
Q 022131 159 YRGRKDANGAMKLYRQMKED 178 (302)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~ 178 (302)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555555544
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.92 E-value=1.2e-07 Score=63.31 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 022131 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194 (302)
Q Consensus 115 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (302)
..+..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHH
Confidence 3444444445555555555555555444321 233444444444444444444444444444432 2334444444444
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 022131 195 FMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~ 213 (302)
+...|++++|...++++.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 4444444444444444443
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.90 E-value=1.2e-07 Score=63.95 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=44.8
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 022131 153 NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232 (302)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 232 (302)
......|.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...|..+..++..
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 333444444455555555554444443 3344445555555555555555555555544431 2234445555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 022131 233 KQKWKEACQYFVEMIE 248 (302)
Q Consensus 233 ~g~~~~a~~~~~~~~~ 248 (302)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555544
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.90 E-value=2.5e-08 Score=73.15 Aligned_cols=159 Identities=10% Similarity=0.023 Sum_probs=100.7
Q ss_pred HhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHccCC
Q 022131 90 SRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN----GV-CPSAETYNCFFKEYRGRKD 164 (302)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~ 164 (302)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +. .....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4567888888855554432 2235667778888888888888888888877652 11 1234566677777888888
Q ss_pred chHHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcC
Q 022131 165 ANGAMKLYRQMKEDGLCVP-----NMHSYNILIGMFMALNRMDMVREIWNDVKGSGL-GPD----LDSYTMLIHGLCEKQ 234 (302)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g 234 (302)
+++|...+.+..+.....+ ....+..+...+...|++++|...+++...... ..+ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 8888888877655310011 234466677777788888888888877653210 111 233566677777788
Q ss_pred CHHHHHHHHHHHHHC
Q 022131 235 KWKEACQYFVEMIEK 249 (302)
Q Consensus 235 ~~~~a~~~~~~~~~~ 249 (302)
++++|.+.+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888887777664
No 131
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.90 E-value=1.3e-07 Score=63.73 Aligned_cols=96 Identities=11% Similarity=0.027 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR 160 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (302)
.+......+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|+..+++.++... .+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHH
Confidence 44455555555566666666665555543 22455555555555555555555555555555432 23445555555555
Q ss_pred ccCCchHHHHHHHHHHhC
Q 022131 161 GRKDANGAMKLYRQMKED 178 (302)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~ 178 (302)
..|++++|...|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 555555555555555554
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.90 E-value=1e-07 Score=64.51 Aligned_cols=117 Identities=11% Similarity=-0.008 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 157 (302)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+... .+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 45566666777777777777777777776653 22566666666777777777777777777666532 34556666666
Q ss_pred HHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 022131 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL 198 (302)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (302)
++...|++++|...+++..+.. +.+...+..+..++...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHh
Confidence 6666666666666666666553 23344444444444433
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.89 E-value=7.1e-08 Score=69.18 Aligned_cols=119 Identities=13% Similarity=0.204 Sum_probs=62.4
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 022131 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM-FMALNRM--D 202 (302)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 202 (302)
..|++++|...+++..+... .+...+..+...|...|++++|...+++..+.. +.+...+..+..+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34555555555555554422 344555555555666666666666666555543 3445555555555 4455555 6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 203 MVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
+|...+++..... +.+...+..+...+...|++++|...++++.+
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 6666665555531 22345555555555666666666666665554
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.88 E-value=1.4e-07 Score=63.77 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=59.7
Q ss_pred ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 022131 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227 (302)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 227 (302)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 34455555566666666666666666665553 3455566666666666666666666666665542 23455666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 022131 228 HGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~~~~ 248 (302)
.++...|++++|...+++..+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666666655
No 135
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.87 E-value=6.2e-07 Score=70.75 Aligned_cols=219 Identities=10% Similarity=0.007 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhcc-C-CHHHHHHH
Q 022131 60 IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH-QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC-G-RIEDAEEL 136 (302)
Q Consensus 60 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~~ 136 (302)
.++|+++++.+...+. -+..+|+.--..+...| .+++++.+++.+.....+ +..+|+.-...+.+. + ++++++.+
T Consensus 70 se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3679999999998753 36778888888888888 599999999999988644 788888877777776 6 88999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCCch--------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-------H
Q 022131 137 LGEMVRNGVCPSAETYNCFFKEYRGRKDAN--------GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR-------M 201 (302)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~ 201 (302)
++++.+... -+..+|+.-...+...+.++ ++++.+.++.+.. +.|...|+.....+.+.+. +
T Consensus 148 ~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 148 IHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHHH
Confidence 999998754 47788877766666666666 8999999999886 6789999998888888776 6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHCC-----CCCchh
Q 022131 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW--------------------KEACQYFVEMIEKG-----LLPQKV 256 (302)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~p~~~ 256 (302)
+++.+.+++.... .+-|...|+.+-..+.+.|.. ....+...++...+ -.+++.
T Consensus 225 ~eELe~~~~aI~~-~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 225 QDELIYILKSIHL-IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 8888988888875 345778888777777666653 33333333333221 135677
Q ss_pred hHHHHHHHHhhcchHHHHHHHHHhcccc
Q 022131 257 TFETLYRGLIQSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 257 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (302)
.+..++..|...|+.++|.++++.+.+.
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 8888999999999999999999998654
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.87 E-value=1.3e-07 Score=63.70 Aligned_cols=117 Identities=9% Similarity=-0.033 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 022131 79 VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKE 158 (302)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (302)
...+..+...+...|+++.|...+++..+.. +.+...+..+...+...|++++|...+++..+... .+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 3444455555555555555555555555443 22444555555555555555555555555554321 234444555555
Q ss_pred HHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 022131 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN 199 (302)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (302)
+...|++++|...+.+..+.. +.+...+..+..++.+.|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHh
Confidence 555555555555555554443 334444444444444443
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.86 E-value=1.4e-07 Score=63.54 Aligned_cols=116 Identities=9% Similarity=-0.020 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 022131 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM 194 (302)
Q Consensus 115 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (302)
..+..+...+...|++++|...+++...... .+...+..+...+...|++++|...+.+..+.. +.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHH
Confidence 3444555555555555555555555554321 234444555555555555555555555554443 3334444455555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 022131 195 FMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234 (302)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 234 (302)
+...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 555555555555555544431 123334444444444333
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.84 E-value=3.5e-08 Score=68.63 Aligned_cols=97 Identities=9% Similarity=-0.097 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 022131 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228 (302)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 228 (302)
...+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...|++..... +.+...+..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 4455555666667777777777777766654 4566666667777777777777777777766642 234566666777
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 022131 229 GLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 229 ~~~~~g~~~~a~~~~~~~~~ 248 (302)
++...|++++|...|++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777665
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.84 E-value=1.7e-07 Score=74.70 Aligned_cols=151 Identities=10% Similarity=-0.032 Sum_probs=108.5
Q ss_pred CCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--------------hhhHHHHHHH
Q 022131 93 HQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS--------------AETYNCFFKE 158 (302)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 158 (302)
+++++|...++...+.. +-+...+..+...+.+.|++++|...|++..+...... ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44555665555443321 11456778888888888999999999888887643221 4677788888
Q ss_pred HHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 022131 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238 (302)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 238 (302)
+...|++++|...+++..+.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..++...|+.++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888775 5677788888888888888888888888877752 3356777777788888888877
Q ss_pred H-HHHHHHHH
Q 022131 239 A-CQYFVEMI 247 (302)
Q Consensus 239 a-~~~~~~~~ 247 (302)
| ...++.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7 44555554
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.84 E-value=2.1e-07 Score=64.76 Aligned_cols=98 Identities=15% Similarity=0.048 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 022131 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193 (302)
Q Consensus 114 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (302)
...+..+...+.+.|++++|+..|++..+..+ .+...|..+..+|...|++++|...|++..+.. +.+...+..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHH
Confidence 44566666677777777777777777776533 356667777777777777777777777777665 455666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 022131 194 MFMALNRMDMVREIWNDVKGS 214 (302)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~ 214 (302)
++...|++++|...|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777664
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.83 E-value=1.8e-07 Score=74.54 Aligned_cols=132 Identities=10% Similarity=-0.039 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcC--------------HHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPT--------------VATYSSVVKCLCSCGRIEDAEELLGEMVRN 143 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 143 (302)
+...+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466788899999999999999999999988753322 588999999999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 022131 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV-REIWNDVK 212 (302)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 212 (302)
.. .+...+..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.+++ ...++.|.
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 478899999999999999999999999999886 66788899999999999999988 44666654
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.83 E-value=6.9e-08 Score=70.70 Aligned_cols=156 Identities=10% Similarity=0.001 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhc----CCC-cCHHHHHHHHHHHhccCCHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK----GIC-PTVATYSSVVKCLCSCGRIE 131 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~ 131 (302)
.|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +.. ....++..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 56667777744444332 2234566777777777777777777777766542 111 13345666667777777777
Q ss_pred HHHHHHHHHHHC----CCCC--ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCH
Q 022131 132 DAEELLGEMVRN----GVCP--SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN----MHSYNILIGMFMALNRM 201 (302)
Q Consensus 132 ~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~ 201 (302)
+|...+++..+. +..+ ....+..+...+...|++++|...+++.........+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777766543 1111 1334566666777777777777777766532110112 22345666667777777
Q ss_pred HHHHHHHHHHHh
Q 022131 202 DMVREIWNDVKG 213 (302)
Q Consensus 202 ~~a~~~~~~~~~ 213 (302)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666554
No 143
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.83 E-value=1.6e-05 Score=62.50 Aligned_cols=232 Identities=8% Similarity=-0.016 Sum_probs=159.2
Q ss_pred HHHhcCCcc-hHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 022131 8 GWCKINRID-MAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL 86 (302)
Q Consensus 8 ~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (302)
...+.|.++ +|+++++.+...+ +-+...|+.--..+...+...........+++++.+++.+..... -+..+|+.-.
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~ 115 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRC 115 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 344667766 7999999998873 234556776655555422100001112337889999999988753 4788898888
Q ss_pred HHHHhcCC--chhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc-
Q 022131 87 HVYSRAHQ--PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR-IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR- 162 (302)
Q Consensus 87 ~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 162 (302)
..+...++ +++++.+++.+.+.... +..+|+.-...+...|. ++++++.++++.+..+ -|..+|+.....+...
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHS
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhh
Confidence 88888774 78999999999988744 88888888888888888 5899999999998765 5777887776666554
Q ss_pred -------------CCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCC
Q 022131 163 -------------KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL-----------NRMDMVREIWNDVKGSGLGP 218 (302)
Q Consensus 163 -------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 218 (302)
+.++++++.+....... +-|...|+-+-..+.+. +.++++++.++++.+. .|
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~p 269 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EP 269 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CT
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cc
Confidence 34677888888888775 67778887655555544 3467788888887774 35
Q ss_pred CHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHH
Q 022131 219 DLDSYTMLIHGL-----CEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 219 ~~~~~~~li~~~-----~~~g~~~~a~~~~~~~~~ 248 (302)
+. .|+.+..+. -..|..+++...+.++++
T Consensus 270 d~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 270 EN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp TC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 43 333222111 134666777777777766
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.80 E-value=2.1e-08 Score=73.43 Aligned_cols=164 Identities=7% Similarity=-0.104 Sum_probs=71.1
Q ss_pred HHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCch
Q 022131 87 HVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166 (302)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 166 (302)
......|+++.+.+.++.-.... ......+..+...+.+.|++++|+..|++..+.... +. .+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~-~~~~~----------- 77 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TE-EWDDQ----------- 77 (198)
T ss_dssp ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CT-TCCCH-----------
T ss_pred hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cc-ccchh-----------
Confidence 33444555555555554322221 113445666666777777777777777777664211 11 00000
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022131 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246 (302)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 246 (302)
....-.. ......+..+..++...|++++|...+++..+. .+.+...+..+..++...|++++|...|++.
T Consensus 78 ----~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 78 ----ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp ----HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ----hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000000 001234445555555555555555555555543 1234455555555555555555555555555
Q ss_pred HHCCCCC-chhhHHHHHHHHhhcchHHHHH
Q 022131 247 IEKGLLP-QKVTFETLYRGLIQSDMLRTWR 275 (302)
Q Consensus 247 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~ 275 (302)
.+. .| +...+..+..++...++.+++.
T Consensus 149 l~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 149 ASL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 442 22 3334444444444555544444
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.77 E-value=6.2e-08 Score=67.33 Aligned_cols=97 Identities=7% Similarity=-0.063 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 022131 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193 (302)
Q Consensus 114 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (302)
...+..+...+.+.|++++|+..|++...... .+...|..+..++...|++++|...|++..... +.+...+..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHH
Confidence 33445555555566666666666666555432 345555555556666666666666666655553 344555555666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 022131 194 MFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~ 213 (302)
++...|++++|...|++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665554
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.76 E-value=5.3e-07 Score=68.87 Aligned_cols=197 Identities=11% Similarity=-0.018 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHhcCCchhHHHHHHHHHhc------------CCC------
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIV-------LHVYSRAHQPQLSLDKLNFMKEK------------GIC------ 111 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~------------~~~------ 111 (302)
.++...|.+.|.++.... +-....|..+ ...+.+.++..+++..+..-... |.-
T Consensus 19 ~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred CCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 567889999999999875 3367788877 46666666666666666655441 100
Q ss_pred --cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCC--HHH
Q 022131 112 --PTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN--MHS 187 (302)
Q Consensus 112 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 187 (302)
--......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~~a 173 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAGAA 173 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHHHH
Confidence 002234556778888999999999999888654 443355566668899999999999998654431 121 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHH
Q 022131 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPD--LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET 260 (302)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 260 (302)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++... .|+......
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~a 246 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAA 246 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHH
Confidence 77888899999999999999999986433253 346667778889999999999999999884 566333333
No 147
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.76 E-value=9.3e-06 Score=63.78 Aligned_cols=214 Identities=11% Similarity=-0.018 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------chhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccC--
Q 022131 61 RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ----------PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG-- 128 (302)
Q Consensus 61 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-- 128 (302)
++|+.+++.+...+. -+..+|+.--..+...+. +++++.+++.+.....+ +..+|+.-...+.+.+
T Consensus 47 ~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 47 ESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcc
Confidence 578999999998742 255667765544444333 57889999999887644 7888888877787777
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC-chHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---------
Q 022131 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKD-ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL--------- 198 (302)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 198 (302)
++++++.+++.+.+... -+..+|+.-..++...|. ++++++.+..+.+.. +.|...|+.....+.+.
T Consensus 125 ~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 125 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC-----
T ss_pred cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhccccccc
Confidence 48999999999998765 588888888888888888 489999999999887 67888888877766655
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCCCCCchhhHHHHH
Q 022131 199 -----NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK-----------QKWKEACQYFVEMIEKGLLPQKVTFETLY 262 (302)
Q Consensus 199 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 262 (302)
+.++++.+.+...... .+-|...|+-+-..+.+. +.++++++.++++.+ +.||. .|..+.
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~-~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~ 277 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN-KWCLLT 277 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc-chHHHH
Confidence 4578899999988875 345777777555554444 457899999999987 45765 343322
Q ss_pred -----HHHhhcchHHHHHHHHHhccc
Q 022131 263 -----RGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 263 -----~~~~~~g~~~~a~~~~~~~~~ 283 (302)
.+....|..+++...+.++.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 278 IILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHH
Confidence 223346677788888888764
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.75 E-value=5e-07 Score=60.67 Aligned_cols=95 Identities=14% Similarity=0.059 Sum_probs=55.8
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022131 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230 (302)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 230 (302)
.+......+...|++++|...|.+..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 44445555556666666666666655553 4455566666666666666666666666655542 22455566666666
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 022131 231 CEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 231 ~~~g~~~~a~~~~~~~~~ 248 (302)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666666654
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.74 E-value=9.7e-07 Score=58.07 Aligned_cols=97 Identities=10% Similarity=-0.089 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 022131 80 TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEY 159 (302)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (302)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+... .+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 344445555555555555555555554443 12444455555555555555555555555544321 2344444444555
Q ss_pred HccCCchHHHHHHHHHHhC
Q 022131 160 RGRKDANGAMKLYRQMKED 178 (302)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~ 178 (302)
...|++++|...+.+..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5555555555555555444
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.73 E-value=4.5e-08 Score=71.68 Aligned_cols=99 Identities=7% Similarity=-0.028 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 022131 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLG-P--------------DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG 250 (302)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~--------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 250 (302)
..+..+...+...|++++|...|++....... | ....+..+..++...|++++|+..+++..+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34444555555555666666555555543111 0 13688889999999999999999999998752
Q ss_pred CCCchhhHHHHHHHHhhcchHHHHHHHHHhccccC
Q 022131 251 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 251 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (302)
+.+...+..+..++...|++++|...+++..+..
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 3456788888999999999999999999877654
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.73 E-value=2.9e-07 Score=70.28 Aligned_cols=190 Identities=11% Similarity=-0.095 Sum_probs=140.2
Q ss_pred hcCCchhHHHHHHHHHhcCCCcCHHHHHHH-------HHHHhccCCHHHHHHHHHHHHHCCCCCC---------------
Q 022131 91 RAHQPQLSLDKLNFMKEKGICPTVATYSSV-------VKCLCSCGRIEDAEELLGEMVRNGVCPS--------------- 148 (302)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 148 (302)
..++...|.+.|.++.+.... ....|..+ ...+.+.++..+++..++.-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 579999999999999988633 56777777 4555555555666555555444 1111
Q ss_pred -------hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--
Q 022131 149 -------AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD-- 219 (302)
Q Consensus 149 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 219 (302)
......+...+...|++++|.+.|..+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG---SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 2234556777889999999999999998764 444366666778899999999999998665531 111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCc--hhhHHHHHHHHhhcchHHHHHHHHHhccccCCC
Q 022131 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ--KVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT 287 (302)
Q Consensus 220 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 287 (302)
...+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|...++++......
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 24677788899999999999999999975433253 345666778899999999999999998876554
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=1.1e-07 Score=73.65 Aligned_cols=194 Identities=9% Similarity=-0.002 Sum_probs=130.8
Q ss_pred cHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCc
Q 022131 33 NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP 112 (302)
Q Consensus 33 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (302)
+...+..+...+.. .|++++|+..|++..... +.+...+..+..++.+.|++++|...+++..+.. +.
T Consensus 3 ~a~~~~~~g~~~~~----------~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~ 70 (281)
T 2c2l_A 3 SAQELKEQGNRLFV----------GRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQ 70 (281)
T ss_dssp CHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TT
T ss_pred hHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence 45667777778888 888999999999999874 3378899999999999999999999999998875 34
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 022131 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192 (302)
Q Consensus 113 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 192 (302)
+...+..+..++...|++++|...|++..+.... +...+...+....+. ..... +........ +.+......+.
T Consensus 71 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~-~~~~~i~~~l~ 144 (281)
T 2c2l_A 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRI-HQESELHSYLT 144 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCC-CCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHH-hhhHHHHHHHH
Confidence 7788999999999999999999999998765221 111111111111111 11111 222223322 44444444433
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 022131 193 GMFMALNRMDMVREIWNDVKGSGLGPDL-DSYTMLIHGLCEK-QKWKEACQYFVEMIE 248 (302)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~-g~~~~a~~~~~~~~~ 248 (302)
. + ..|+.++|.+.++...+. .|+. .....+-..+.+. +.+++|.++|.+..+
T Consensus 145 ~-l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 145 R-L-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp H-H-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred H-H-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 2 2 368899999988887765 4544 3334444444444 678899999988754
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.71 E-value=2e-06 Score=58.44 Aligned_cols=98 Identities=10% Similarity=-0.012 Sum_probs=65.4
Q ss_pred ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 022131 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLI 227 (302)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 227 (302)
+...+..+...+...|++++|...|....... +.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 45566666666666777777777776666654 4556666677777777777777777777766642 23556666777
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 022131 228 HGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~~~~ 248 (302)
.++...|++++|...|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777777654
No 154
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.70 E-value=4.1e-07 Score=61.21 Aligned_cols=109 Identities=16% Similarity=0.209 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHH
Q 022131 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL--GPD----LDSY 223 (302)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 223 (302)
..+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|...+++...... .++ ...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 344455555566666666666666665553 34555566666666666666666666666554311 111 4556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHH
Q 022131 224 TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY 262 (302)
Q Consensus 224 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 262 (302)
..+..++...|++++|...|++..+. .|+......+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 66666677777777777777776653 34444444333
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.70 E-value=1.7e-06 Score=56.92 Aligned_cols=94 Identities=11% Similarity=-0.032 Sum_probs=42.9
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 022131 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLC 231 (302)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 231 (302)
+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3334444444444444444444444432 2334444444444444455555555554444431 123444444444555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 022131 232 EKQKWKEACQYFVEMIE 248 (302)
Q Consensus 232 ~~g~~~~a~~~~~~~~~ 248 (302)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555554443
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.69 E-value=1e-06 Score=59.16 Aligned_cols=95 Identities=12% Similarity=0.003 Sum_probs=52.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 022131 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF 195 (302)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (302)
.+..+...+.+.|++++|+..|++..+... .+...|..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence 444455555555555555555555554422 244555555555555555555555555555553 34455555555566
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 022131 196 MALNRMDMVREIWNDVKG 213 (302)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~ 213 (302)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666655554
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.69 E-value=6.7e-07 Score=60.25 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=57.6
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HHHHH
Q 022131 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG--LGPD----LDSYT 224 (302)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~ 224 (302)
++..+...+.+.|++++|+..|.+..+.. +.+...|..+..+|...|++++|.+.+++..+.. ..++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34445555555666666666666555543 4455556666666666666666666666554421 0111 13455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhH
Q 022131 225 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF 258 (302)
Q Consensus 225 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 258 (302)
.+..++...|++++|++.|++..+ ..||+.+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHH
Confidence 556666667777777777776655 24554443
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.69 E-value=1.1e-06 Score=60.53 Aligned_cols=96 Identities=7% Similarity=-0.150 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022131 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229 (302)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 229 (302)
..+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...|++..... +.+...+..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 344455556666677777777777666654 4566666666677777777777777777766642 3345566666677
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 022131 230 LCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 230 ~~~~g~~~~a~~~~~~~~~ 248 (302)
+...|++++|...|++..+
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776655
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.67 E-value=1.8e-06 Score=60.98 Aligned_cols=96 Identities=15% Similarity=0.032 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022131 150 ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHG 229 (302)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 229 (302)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344444555555555555555555555543 3345555555555555555555555555555532 2235555555555
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 022131 230 LCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 230 ~~~~g~~~~a~~~~~~~~~ 248 (302)
+...|++++|...|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 5566666666666655554
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.66 E-value=7.4e-07 Score=60.05 Aligned_cols=98 Identities=7% Similarity=0.039 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC--CC----hhhHH
Q 022131 80 TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC--PS----AETYN 153 (302)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 153 (302)
..+..+...+.+.|++++|+..|++..+... .+...|..+..+|.+.|++++|+..+++.++.... ++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3455666677777777777777777766542 25666777777777777777777777766553210 11 12444
Q ss_pred HHHHHHHccCCchHHHHHHHHHHhC
Q 022131 154 CFFKEYRGRKDANGAMKLYRQMKED 178 (302)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (302)
.+..++...|++++|.+.|++....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555555666666666666665554
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.64 E-value=7.1e-07 Score=58.17 Aligned_cols=56 Identities=9% Similarity=0.002 Sum_probs=21.7
Q ss_pred HHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022131 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212 (302)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (302)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333334444444444444333332 2233333333334444444444444444433
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.63 E-value=6.4e-07 Score=58.38 Aligned_cols=97 Identities=11% Similarity=-0.031 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHH
Q 022131 80 TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP--SAETYNCFFK 157 (302)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 157 (302)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+... . +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHHH
Confidence 344445555555555555555555554443 12344455555555555555555555555554321 2 3444445555
Q ss_pred HHHcc-CCchHHHHHHHHHHhC
Q 022131 158 EYRGR-KDANGAMKLYRQMKED 178 (302)
Q Consensus 158 ~~~~~-~~~~~a~~~~~~~~~~ 178 (302)
++... |++++|.+.+......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 55555 5555555555555444
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.63 E-value=1.3e-06 Score=61.66 Aligned_cols=100 Identities=11% Similarity=-0.014 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFK 157 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 157 (302)
+...+..+...+.+.|++++|+..|++..+... .+...|..+..+|.+.|++++|+..+++..+... .+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 456777788888888888888888888877653 3677788888888888888888888888887643 35777888888
Q ss_pred HHHccCCchHHHHHHHHHHhCC
Q 022131 158 EYRGRKDANGAMKLYRQMKEDG 179 (302)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~ 179 (302)
++...|++++|...|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888887764
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.62 E-value=8.9e-07 Score=60.92 Aligned_cols=92 Identities=9% Similarity=-0.013 Sum_probs=42.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 022131 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL 198 (302)
Q Consensus 119 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (302)
.+...+.+.|++++|...|++...... .+...|..+..++...|++++|...|++..... +.+...+..+..++...
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHc
Confidence 334444444444444444444444322 234444444444444444444444444444443 33344444444444555
Q ss_pred CCHHHHHHHHHHHHh
Q 022131 199 NRMDMVREIWNDVKG 213 (302)
Q Consensus 199 ~~~~~a~~~~~~~~~ 213 (302)
|++++|...|+...+
T Consensus 100 g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 100 GDLDGAESGFYSARA 114 (142)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555544443
No 165
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.60 E-value=9.6e-05 Score=61.93 Aligned_cols=122 Identities=7% Similarity=-0.067 Sum_probs=63.6
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022131 152 YNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMA-LNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGL 230 (302)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 230 (302)
|...+....+.++.+.|..+|... +.. ..+...|......-.. .++.+.|..+|+...+. .+-+...+...+...
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 333334444455566666666666 221 2233333322221112 22466777777766654 222344445555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhcc
Q 022131 231 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282 (302)
Q Consensus 231 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (302)
...|+.+.|..+|+++. .....|...+.--...|+.+.+..++++..
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66677777777776651 134455555555555677777766665544
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.60 E-value=2.2e-06 Score=58.31 Aligned_cols=98 Identities=11% Similarity=0.006 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 022131 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192 (302)
Q Consensus 113 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 192 (302)
+...+..+...+...|++++|...|++...... .+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHHH
Confidence 344555555555555555555555555554422 234555555555555566666665555555543 34455555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 022131 193 GMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~ 213 (302)
.++...|++++|...|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666655544
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.59 E-value=8e-07 Score=59.73 Aligned_cols=62 Identities=10% Similarity=0.025 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 022131 80 TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR 142 (302)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 142 (302)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 344445555555555555555555554443 22344445555555555555555555555443
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.59 E-value=7.7e-06 Score=67.32 Aligned_cols=192 Identities=13% Similarity=0.061 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCC-CcCH----H
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPD----------------VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGI-CPTV----A 115 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~ 115 (302)
.|++++|++.|.++.+...... ...+..+...|...|++++|.+.+..+...-. .++. .
T Consensus 17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 7889999999999987532211 12477889999999999999999988765311 1121 2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCC----CCCCHH
Q 022131 116 TYSSVVKCLCSCGRIEDAEELLGEMVRN----GVCP-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL----CVPNMH 186 (302)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~ 186 (302)
+.+.+-..+...|+.+.|..+++..... +..+ -..++..+...+...|++++|..++.++...-. .+....
T Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 176 (434)
T 4b4t_Q 97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVD 176 (434)
T ss_dssp HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHH
Confidence 3344445556678999999999887642 2222 356778899999999999999999998865311 022355
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC-C-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 187 SYNILIGMFMALNRMDMVREIWNDVKGS--GLG-P-D--LDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
++..++..|...|++++|..++++.... .+. | . ...+..+...+...|++++|...|.+..+
T Consensus 177 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 177 VHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7888899999999999999999887642 121 1 1 24566667777888999999998887754
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=3.5e-06 Score=57.93 Aligned_cols=98 Identities=7% Similarity=-0.073 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHH
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPT----VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN 153 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (302)
+...+..+...+...|++++|...|++..+.. |+ ...+..+..+|...|++++|...+++..+... .+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHH
Confidence 45566666666666777777777777666553 33 45566666666666666666666666665422 2455555
Q ss_pred HHHHHHHccCCchHHHHHHHHHHhC
Q 022131 154 CFFKEYRGRKDANGAMKLYRQMKED 178 (302)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (302)
.+..++...|++++|...+++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666666666666666666655
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=6.5e-06 Score=56.59 Aligned_cols=96 Identities=14% Similarity=0.014 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 022131 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN----MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYT 224 (302)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (302)
...+..+...+...|++++|...|++..+.. |+ ...+..+..++...|++++|...+++..+. .+.+...+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 103 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKALY 103 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHHHH
Confidence 4445555555555666666666666555542 33 455555666666666666666666665554 122455566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 225 MLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 225 ~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
.+..++...|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666666655
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.57 E-value=9.6e-06 Score=66.73 Aligned_cols=197 Identities=8% Similarity=-0.080 Sum_probs=140.1
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCCCcC----------------HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC
Q 022131 86 LHVYSRAHQPQLSLDKLNFMKEKGICPT----------------VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVC-PS 148 (302)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 148 (302)
.+.+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+...-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4456778999999999999987632211 134778999999999999999999987653111 12
Q ss_pred h----hhHHHHHHHHHccCCchHHHHHHHHHHh----CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC--
Q 022131 149 A----ETYNCFFKEYRGRKDANGAMKLYRQMKE----DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS--GL-- 216 (302)
Q Consensus 149 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-- 216 (302)
. .+.+.+-..+...|+.+.+..++..... .+....-..++..+...+...|++++|..+++.+... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1233333444567889999998887653 2321233567788999999999999999999987642 11
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC-C-c--hhhHHHHHHHHhhcchHHHHHHHHHhcc
Q 022131 217 GP-DLDSYTMLIHGLCEKQKWKEACQYFVEMIEK--GLL-P-Q--KVTFETLYRGLIQSDMLRTWRRLKKKLD 282 (302)
Q Consensus 217 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~-p-~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (302)
++ ....+..++..|...|++++|..++++.... .+. | . ...+..+...+...|++++|...+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 2467888999999999999999999987643 121 1 1 2455666777888999999988776654
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.52 E-value=1.9e-06 Score=57.49 Aligned_cols=89 Identities=7% Similarity=-0.071 Sum_probs=39.5
Q ss_pred HHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 022131 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235 (302)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 235 (302)
...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 334444444444444444444443 3344444444444444444444444444444431 1133344444444444444
Q ss_pred HHHHHHHHHHHH
Q 022131 236 WKEACQYFVEMI 247 (302)
Q Consensus 236 ~~~a~~~~~~~~ 247 (302)
+++|...+++..
T Consensus 101 ~~~A~~~~~~al 112 (121)
T 1hxi_A 101 ANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.51 E-value=1.4e-06 Score=60.80 Aligned_cols=133 Identities=10% Similarity=-0.013 Sum_probs=61.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCC----CHH
Q 022131 116 TYSSVVKCLCSCGRIEDAEELLGEMVRNGVC-PS----AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVP----NMH 186 (302)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~ 186 (302)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.....+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444444555555555555444332100 00 12344444455555555555555554433210001 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 187 SYNILIGMFMALNRMDMVREIWNDVKGS----GLG-PDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
.+..+...+...|++++|.+.+++..+. +.. .....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4455555666666666666666554432 100 0123445555566666666666666665543
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.47 E-value=8.6e-06 Score=54.61 Aligned_cols=91 Identities=12% Similarity=0.021 Sum_probs=52.1
Q ss_pred HHHHHHccCCchHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 022131 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNM---HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD---LDSYTMLIH 228 (302)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~ 228 (302)
+...+...|++++|...|..+.+.. +.+. ..+..+..++...|++++|...++...+.. +.+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3444555666666666666665543 2222 355555566666666666666666665532 112 445556666
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 022131 229 GLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 229 ~~~~~g~~~~a~~~~~~~~~ 248 (302)
++...|++++|...|+++.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666655
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.47 E-value=3e-06 Score=56.49 Aligned_cols=92 Identities=4% Similarity=-0.080 Sum_probs=49.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 022131 119 SVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL 198 (302)
Q Consensus 119 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (302)
.+...+.+.|++++|...|++..+... .+...|..+..++...|++++|...+++..+.. +.+...+..+..++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 344445555555555555555554422 244555555555555555555555555555543 33455555555555555
Q ss_pred CCHHHHHHHHHHHHh
Q 022131 199 NRMDMVREIWNDVKG 213 (302)
Q Consensus 199 ~~~~~a~~~~~~~~~ 213 (302)
|++++|...+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.43 E-value=2.6e-06 Score=59.49 Aligned_cols=135 Identities=10% Similarity=-0.037 Sum_probs=102.1
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-C
Q 022131 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN----MHSYNILIGMFMALNRMDMVREIWNDVKGS----GLGP-D 219 (302)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 219 (302)
..++..+...+...|++++|...+.+..+.....++ ..++..+...+...|++++|.+.+++..+. +.++ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 356778888899999999999999988764210112 246788889999999999999999987653 1111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-chhhHHHHHHHHhhcchHHHHHHHHHhccc
Q 022131 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLLP-QKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 220 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
...+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456778888999999999999999988653 2111 235677788899999999999999987654
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.43 E-value=7e-06 Score=68.23 Aligned_cols=149 Identities=8% Similarity=-0.008 Sum_probs=95.3
Q ss_pred CchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--------------hhhHHHHHHHH
Q 022131 94 QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS--------------AETYNCFFKEY 159 (302)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~ 159 (302)
++++|...|+...+.. +-....+..+...+.+.|++++|...|++..+...... ...|..+..+|
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554433321 11345677788888888888888888888876532111 46667777777
Q ss_pred HccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 022131 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEA 239 (302)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 239 (302)
.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...++.+++
T Consensus 328 ~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777765 5567777777777777777777777777777642 22445666666666666666655
Q ss_pred HH-HHHHH
Q 022131 240 CQ-YFVEM 246 (302)
Q Consensus 240 ~~-~~~~~ 246 (302)
.+ .+..|
T Consensus 405 ~~~~~~~~ 412 (457)
T 1kt0_A 405 DRRIYANM 412 (457)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 53 34444
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.42 E-value=2.3e-06 Score=71.54 Aligned_cols=116 Identities=13% Similarity=0.058 Sum_probs=65.8
Q ss_pred HHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 022131 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238 (302)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 238 (302)
+...|++++|.+.+++..+.. +.+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+..+|...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 445566666666666666553 4456666666666666666666666666666642 2345566666666666667777
Q ss_pred HHHHHHHHHHCCCCC-chhhHHHHHHH--HhhcchHHHHHHHHH
Q 022131 239 ACQYFVEMIEKGLLP-QKVTFETLYRG--LIQSDMLRTWRRLKK 279 (302)
Q Consensus 239 a~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~a~~~~~ 279 (302)
|.+.+++..+. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77666666553 23 22333334333 556666666666665
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.41 E-value=9.3e-07 Score=58.55 Aligned_cols=86 Identities=9% Similarity=0.005 Sum_probs=40.6
Q ss_pred cCCchhHHHHHHHHHhcC--CCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHH
Q 022131 92 AHQPQLSLDKLNFMKEKG--ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAM 169 (302)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 169 (302)
.|++++|+..|++..+.+ -+.+...+..+..+|...|++++|+..|++..+... -+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555442 112333445555555555555555555555554422 23444555555555555555555
Q ss_pred HHHHHHHhC
Q 022131 170 KLYRQMKED 178 (302)
Q Consensus 170 ~~~~~~~~~ 178 (302)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555444
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.41 E-value=2.6e-05 Score=52.20 Aligned_cols=92 Identities=11% Similarity=0.016 Sum_probs=46.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCC---HHHHHHHHH
Q 022131 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPSA---ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN---MHSYNILIG 193 (302)
Q Consensus 120 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~ 193 (302)
+...+...|++++|...|+++.+... .+. ..+..+..++...|++++|...++++.+.. +.+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 33444455555555555555554321 111 244445555555555555555555555443 222 344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 022131 194 MFMALNRMDMVREIWNDVKGS 214 (302)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~ 214 (302)
++...|++++|...|+.+.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555556666666655555543
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.41 E-value=8e-06 Score=57.40 Aligned_cols=121 Identities=10% Similarity=0.071 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 022131 114 VATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIG 193 (302)
Q Consensus 114 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (302)
...+......+.+.|++++|+..|++..+.- +. .....++.... +..+ . +.+...+..+..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~--~~----------~~~~~~~~~~~--~~~~---~--~~~~~~~~nla~ 71 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRL--DT----------LILREKPGEPE--WVEL---D--RKNIPLYANMSQ 71 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------HHHTSCTTSHH--HHHH---H--HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HH----------hcccCCCCHHH--HHHH---H--HHHHHHHHHHHH
Confidence 4456666667777777777777777665430 00 00000000000 0000 1 334567777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchh
Q 022131 194 MFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV 256 (302)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 256 (302)
++.+.|++++|...+++..... +.+...|..+..++...|++++|...|++..+. .|+..
T Consensus 72 ~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 72 CYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 8888888888888888887752 346778888888888888888888888888773 45543
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.41 E-value=1.5e-06 Score=72.57 Aligned_cols=119 Identities=13% Similarity=0.015 Sum_probs=68.5
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH
Q 022131 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRM 201 (302)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (302)
..+.+.|++++|+..+++..+... .+..++..+..+|...|++++|...+++..+.. +.+...+..+..+|...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCH
Confidence 344556666666666666665422 245666666666666666666666666666664 45566666666666777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 022131 202 DMVREIWNDVKGSGLGPDLDSYTMLIHG--LCEKQKWKEACQYFV 244 (302)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 244 (302)
++|.+.+++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777776666542 1123344444444 566667777776666
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.41 E-value=6.4e-06 Score=68.45 Aligned_cols=133 Identities=8% Similarity=-0.062 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcC--------------HHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPT--------------VATYSSVVKCLCSCGRIEDAEELLGEMVRN 143 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 143 (302)
....+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 355778888999999999999999999988642211 578999999999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHh
Q 022131 144 GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE-IWNDVKG 213 (302)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~ 213 (302)
.. .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.++.+++.+ .+..|..
T Consensus 347 ~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 347 DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 478889999999999999999999999999885 5677788888888888888887764 4454443
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.39 E-value=1.1e-05 Score=65.07 Aligned_cols=120 Identities=8% Similarity=-0.008 Sum_probs=88.3
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHh----------------CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 022131 152 YNCFFKEYRGRKDANGAMKLYRQMKE----------------DGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSG 215 (302)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (302)
+..+...+.+.|++++|...|++..+ .. +.+...|..+..++.+.|++++|.+.+++..+..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~--~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ--PVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH--HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 44445555566666666666655554 21 3456778888899999999999999999998863
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-chhhHHHHHHHHhhcchHHHHHH
Q 022131 216 LGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP-QKVTFETLYRGLIQSDMLRTWRR 276 (302)
Q Consensus 216 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 276 (302)
+.+...+..+..+|...|++++|...|++..+. .| +...+..+..++...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888999999999999999999998874 44 45566667777777777776654
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.35 E-value=9.8e-06 Score=65.31 Aligned_cols=122 Identities=11% Similarity=-0.063 Sum_probs=79.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHC---------------CCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCC
Q 022131 117 YSSVVKCLCSCGRIEDAEELLGEMVRN---------------GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLC 181 (302)
Q Consensus 117 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 181 (302)
+..+...+.+.|++++|+..|++..+. -.+.+...|..+..+|.+.|++++|...+++..+..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-- 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--
Confidence 455555566666666666666655541 011234567777777778888888888888877764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 022131 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQ 241 (302)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 241 (302)
+.+...+..+..++...|++++|...|++..+.. +.+...+..+..++...++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777778888888888888888777652 2355566666666666665555543
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.32 E-value=2.7e-06 Score=56.24 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=50.3
Q ss_pred cCCchHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 022131 162 RKDANGAMKLYRQMKEDGLC-VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240 (302)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 240 (302)
.|++++|...|++..+.+.. +.+...+..+..++...|++++|...+++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666666655210 2334556666666666777777777777666642 234566666666667777777777
Q ss_pred HHHHHHHH
Q 022131 241 QYFVEMIE 248 (302)
Q Consensus 241 ~~~~~~~~ 248 (302)
..+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766655
No 187
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.30 E-value=0.0002 Score=59.97 Aligned_cols=204 Identities=6% Similarity=-0.068 Sum_probs=138.2
Q ss_pred chHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCc
Q 022131 16 DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP 95 (302)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 95 (302)
+++..+|+++... .+-+...|...+..+.+ .++++.|..+|++.... +.+...+. .|....+.
T Consensus 196 ~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~----------~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 196 SRMHFIHNYILDS-FYYAEEVYFFYSEYLIG----------IGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence 3466788887765 34456778877777777 67789999999999987 33433332 22222222
Q ss_pred hhHHHHHHHHHhcC------------CCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-c
Q 022131 96 QLSLDKLNFMKEKG------------ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRG-R 162 (302)
Q Consensus 96 ~~a~~~~~~~~~~~------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 162 (302)
++. ++.+.+.- .......|...+....+.++.+.|..+|++. +. ...+...|......-.. .
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHC
Confidence 222 33332210 0112345777777777888999999999999 32 22344445432222222 3
Q ss_pred CCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 022131 163 KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242 (302)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 242 (302)
++.+.|..+|+...+.. +.+...+...++.....|+.+.|..+|+.+. .....|...+..=...|+.+.+..+
T Consensus 334 ~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v 406 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFREL 406 (493)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 36999999999998864 3345566777887888999999999999973 2578888888877888999999999
Q ss_pred HHHHHH
Q 022131 243 FVEMIE 248 (302)
Q Consensus 243 ~~~~~~ 248 (302)
+++..+
T Consensus 407 ~~~~~~ 412 (493)
T 2uy1_A 407 VDQKMD 412 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988864
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.29 E-value=1.7e-05 Score=55.72 Aligned_cols=100 Identities=11% Similarity=0.095 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhc--------CC---------CcCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK--------GI---------CPTVATYSSVVKCLCSCGRIEDAEELLGEM 140 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 140 (302)
....+......+.+.|++++|+..|.+..+. .. +.+...|..+..+|.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4567888899999999999999999998765 00 112234455555555555555555555555
Q ss_pred HHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhC
Q 022131 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178 (302)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (302)
++... .+...|..+..++...|++++|...|.+..+.
T Consensus 90 l~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 54422 23445555555555555555555555555544
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.27 E-value=8.1e-06 Score=64.98 Aligned_cols=95 Identities=11% Similarity=-0.061 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChh------------------hHHHHHHHHHccCCchHHHHHHHHHH
Q 022131 115 ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE------------------TYNCFFKEYRGRKDANGAMKLYRQMK 176 (302)
Q Consensus 115 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (302)
..+..+...+.+.|++++|...|++..... |+.. .|..+..+|.+.|++++|...+++..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666667777777777777766531 2222 33444444444444444444444444
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022131 177 EDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
+.. +.+...+..+..+|...|++++|...|++..+
T Consensus 258 ~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 258 TEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 432 23344444444444444444444444444433
No 190
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.23 E-value=0.00013 Score=49.66 Aligned_cols=112 Identities=11% Similarity=-0.016 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhc----cCCHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS----CGRIED 132 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~ 132 (302)
.+++++|++.|++..+.| .|+.. |...|...+..++|.+.|++..+.| +...+..+...|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 678888888888888876 33333 6666777777788888888888775 56677777777776 778888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCchHHHHHHHHHHhCC
Q 022131 133 AEELLGEMVRNGVCPSAETYNCFFKEYRG----RKDANGAMKLYRQMKEDG 179 (302)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 179 (302)
|..+|++..+.| ++..+..+...|.. .++.++|...|++..+.|
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 888888887763 55666777777776 677888888888777765
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.23 E-value=7.2e-06 Score=65.28 Aligned_cols=131 Identities=7% Similarity=-0.016 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHH------------------HHHHHHHHHhccCCHHHHHHHHHHH
Q 022131 79 VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVA------------------TYSSVVKCLCSCGRIEDAEELLGEM 140 (302)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~ll~~~~~~~~~~~a~~~~~~~ 140 (302)
...+..+...+.+.|++++|...|++..+.. |+.. .|..+..+|.+.|++++|+..+++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456677788889999999999999987763 3332 7888999999999999999999999
Q ss_pred HHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhC
Q 022131 141 VRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGM-FMALNRMDMVREIWNDVKGS 214 (302)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~ 214 (302)
.+... .+...|..+..+|...|++++|...|++..+.. +.+...+..+... ....+..+.+...|..+...
T Consensus 257 l~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 257 LTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 88643 477899999999999999999999999998764 3444555555544 23345667777788877654
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.17 E-value=4.6e-05 Score=49.96 Aligned_cols=79 Identities=13% Similarity=-0.002 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022131 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246 (302)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 246 (302)
.+...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+..++...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556666666654 4566677777777777777777777777776642 335666777777777777777777777777
Q ss_pred HH
Q 022131 247 IE 248 (302)
Q Consensus 247 ~~ 248 (302)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.16 E-value=0.00057 Score=58.29 Aligned_cols=171 Identities=8% Similarity=-0.055 Sum_probs=135.0
Q ss_pred CchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCC----------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 022131 94 QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR----------IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163 (302)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 163 (302)
..++|++.++.+...+.. +..+|+.--.++...|+ +++++..++.+.+... -+..+|+.-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcc
Confidence 346789999999887643 66677776666666666 8999999999998754 47888888888888888
Q ss_pred --CchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-------
Q 022131 164 --DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALN-RMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK------- 233 (302)
Q Consensus 164 --~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------- 233 (302)
+++++++.++++.+.. +.+...|+.-..+..+.| .++++.+.++++.+.. +-|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 6699999999999987 688999998888888888 8999999999988863 34778888877776653
Q ss_pred -------CCHHHHHHHHHHHHHCCCCC-chhhHHHHHHHHhhcchH
Q 022131 234 -------QKWKEACQYFVEMIEKGLLP-QKVTFETLYRGLIQSDML 271 (302)
Q Consensus 234 -------g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 271 (302)
+.++++++.+++.... .| |...|..+-..+.+.++.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCc
Confidence 5679999999998874 45 556777766666666653
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.16 E-value=4e-06 Score=54.56 Aligned_cols=65 Identities=6% Similarity=0.003 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 022131 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 249 (302)
+...+..+...+...|++++|...+++..+. .+.+...+..+..++...|++++|+..+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4456666777777777777777777777665 2335667777777777778888888777777653
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.16 E-value=0.0002 Score=61.11 Aligned_cols=169 Identities=9% Similarity=-0.029 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------chhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccC--
Q 022131 61 RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQ----------PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG-- 128 (302)
Q Consensus 61 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-- 128 (302)
++|++.++++...+. -+..+|+.--.++...|+ ++++++.++.+.+...+ +..+|+.-...+.+.+
T Consensus 46 eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 678999999998753 366788877777777777 89999999999988754 8888998888889999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC-CchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---------
Q 022131 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK-DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL--------- 198 (302)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 198 (302)
++++++..++++.+... -+..+|+.-..++...| .++++++.+.++.+.. +.|...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 124 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhccccccccc
Confidence 77999999999999865 47888988888888888 8899999999999886 67888998887777663
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 022131 199 -----NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235 (302)
Q Consensus 199 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 235 (302)
+.++++.+.+++..... +-|...|+..-..+.+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 55789999998888752 3467788877776666665
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.15 E-value=7.3e-06 Score=68.30 Aligned_cols=127 Identities=8% Similarity=-0.111 Sum_probs=91.3
Q ss_pred HHHHhcCCcchHHHHHHHHHhC-----C--CcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc-----C
Q 022131 7 YGWCKINRIDMAERFLGEMIER-----G--VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR-----G 74 (302)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~ 74 (302)
..+...|++++|+.++++.++. | .+-...+++.+..+|.. .|++++|+.++++..+. |
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~----------~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY----------LQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----------hcCHHHHHHHHHHHHHHHHHHcC
Confidence 3456789999999999988653 1 22235688999999999 66667777766665432 2
Q ss_pred --CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhc-----CCC-c-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 022131 75 --IEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK-----GIC-P-TVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143 (302)
Q Consensus 75 --~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 143 (302)
.+-...+++.|...|...|++++|..++++..+. |.. | ...+...+-.++...+.+++|+.++..+.+.
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223467899999999999999999999887543 321 2 2334566667777888899999999888764
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.15 E-value=5.4e-05 Score=52.39 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=16.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 022131 116 TYSSVVKCLCSCGRIEDAEELLGEMVRN 143 (302)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 143 (302)
.+......+.+.|++++|+..|++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l 40 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI 40 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 3444555556666666666666666654
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.12 E-value=5.8e-05 Score=51.45 Aligned_cols=113 Identities=6% Similarity=-0.100 Sum_probs=91.7
Q ss_pred cCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 022131 12 INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91 (302)
Q Consensus 12 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (302)
.+++++|.+.|++..+.|. |+.. +-..|.. .+.+++|.+.|++..+.| +...+..|...|..
T Consensus 8 ~~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~----------g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~ 69 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE-MFGC----LSLVSNS----------QINKQKLFQYLSKACELN---SGNGCRFLGDFYEN 69 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TTHH----HHHHTCT----------TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHc----------CCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHc
Confidence 4578999999999998873 3332 4444444 344566999999999875 67888888888888
Q ss_pred ----cCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCC
Q 022131 92 ----AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCS----CGRIEDAEELLGEMVRNGV 145 (302)
Q Consensus 92 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~ 145 (302)
.+++++|...|++..+.| +...+..+...|.. .++.++|..+|++..+.|.
T Consensus 70 G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 70 GKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 889999999999999886 66778888888888 8999999999999998864
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.11 E-value=2.7e-05 Score=64.86 Aligned_cols=126 Identities=10% Similarity=-0.049 Sum_probs=95.1
Q ss_pred HHHccCCchHHHHHHHHHHhC-----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CC-CHHHHH
Q 022131 158 EYRGRKDANGAMKLYRQMKED-----GLCVP-NMHSYNILIGMFMALNRMDMVREIWNDVKG-----SGL-GP-DLDSYT 224 (302)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~-~~~~~~ 224 (302)
.+...|++++|..++++..+. |...| ...+++.|..+|...|++++|..++++... .|. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356889999999999887653 11122 346789999999999999999999988664 121 12 346789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCch-hhHHHHHHHHhhcchHHHHHHHHHhccc
Q 022131 225 MLIHGLCEKQKWKEACQYFVEMIEK-----GL-LPQK-VTFETLYRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 225 ~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
.|...|...|++++|..++++..+- |- .|+. .+...+-.++...+.+++|+.++.++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987642 21 2322 3455666788899999999999998876
No 200
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.03 E-value=0.00013 Score=50.54 Aligned_cols=64 Identities=6% Similarity=-0.132 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCc------CH-----HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 022131 79 VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP------TV-----ATYSSVVKCLCSCGRIEDAEELLGEMVR 142 (302)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 142 (302)
...+......+.+.|++++|+..|++..+..... +. ..|..+..++.+.|++++|+..+++.++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445666777888999999999999998764321 12 2566666666666676666666666655
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.99 E-value=5.8e-05 Score=49.43 Aligned_cols=62 Identities=13% Similarity=0.014 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 022131 79 VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141 (302)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 141 (302)
...+..+...+...|++++|...+++..+... .+...|..+..++...|++++|...|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444444444321 133344444444444444444444444433
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.94 E-value=0.00017 Score=44.59 Aligned_cols=61 Identities=8% Similarity=0.087 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR 142 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 142 (302)
.+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33334444444444444444444443332 11333333444444444444444444444333
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.93 E-value=5.9e-05 Score=48.83 Aligned_cols=64 Identities=11% Similarity=-0.043 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022131 149 AETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214 (302)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (302)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+++..+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3344455555555555555555555555543 344555555555566666666666666655553
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.90 E-value=0.00024 Score=43.91 Aligned_cols=60 Identities=13% Similarity=0.226 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3334444444444444444444443321 12333444444444444444444444444433
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.88 E-value=0.00013 Score=50.37 Aligned_cols=110 Identities=9% Similarity=0.055 Sum_probs=80.4
Q ss_pred HHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 022131 9 WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV 88 (302)
Q Consensus 9 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 88 (302)
..+.+.+++|++.++...+.. +-+...|..+-.++...+.+.......+.+++|+..|++..+.+. .+..+|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP-~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc-CcHHHHHHHHHH
Confidence 346678999999999998773 447788888888888854444333233457799999999998753 367788889999
Q ss_pred HHhcC-----------CchhHHHHHHHHHhcCCCcCHHHHHHHHH
Q 022131 89 YSRAH-----------QPQLSLDKLNFMKEKGICPTVATYSSVVK 122 (302)
Q Consensus 89 ~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 122 (302)
|...| ++++|++.|++..+. .|+...|...+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 98764 788888888888876 455555544443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.87 E-value=6.7e-05 Score=51.80 Aligned_cols=97 Identities=6% Similarity=0.030 Sum_probs=55.5
Q ss_pred CCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 022131 163 KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR----------MDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232 (302)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 232 (302)
+.+++|...++...+.. +.+...|..+..++...++ +++|+..|++..+.. +-+...|..+-.+|..
T Consensus 16 ~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 34455555555555554 4455555555555554443 346666666666542 2244566666666655
Q ss_pred c-----------CCHHHHHHHHHHHHHCCCCCchhhHHHHHHH
Q 022131 233 K-----------QKWKEACQYFVEMIEKGLLPQKVTFETLYRG 264 (302)
Q Consensus 233 ~-----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 264 (302)
. |++++|++.|++.++ +.|+...|...+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 4 478888888888877 46766655554443
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.86 E-value=0.0016 Score=51.57 Aligned_cols=141 Identities=10% Similarity=-0.016 Sum_probs=63.4
Q ss_pred CcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cC-Cc-hhHH---HH
Q 022131 30 VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR---AH-QP-QLSL---DK 101 (302)
Q Consensus 30 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~-~~-~~a~---~~ 101 (302)
.+.+...|...+++........ .....+|..+|++..+.... ....+..+.-+|.. .+ .. .... ..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~-----~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGD-----DKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCS-----HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence 3556677777776655422211 45667788888888876311 34444444444331 00 00 0000 01
Q ss_pred HHHHHh-cCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhC
Q 022131 102 LNFMKE-KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178 (302)
Q Consensus 102 ~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (302)
++.... ...+.+..++..+...+...|++++|...+++....+ |+...|..+...+...|++++|.+.+.+....
T Consensus 264 ~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 111000 0112344444444444444455555555555554442 34444444444444555555555555444444
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.82 E-value=0.0002 Score=45.53 Aligned_cols=66 Identities=9% Similarity=0.070 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
+.+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|.+.+++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455666677777777777777777777766642 23455667777777777777777777776654
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.74 E-value=0.00015 Score=46.14 Aligned_cols=63 Identities=16% Similarity=0.077 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 141 (302)
+...+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|...|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555555555555555544321 33445555555555555555555555444
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.69 E-value=0.0011 Score=52.48 Aligned_cols=76 Identities=16% Similarity=0.027 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHH
Q 022131 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL 261 (302)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 261 (302)
+.+..++..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++... +.|...+|...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 5677788887777777899999999999988864 7877777778888889999999999998877 46777776543
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.38 E-value=0.0015 Score=41.10 Aligned_cols=58 Identities=12% Similarity=0.208 Sum_probs=38.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 022131 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLD-SYTMLIHGLCEKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~ 249 (302)
....+...|++++|...+++..+.. +.+.. .+..+..++...|++++|...|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445566777777777777776642 23445 6667777777777777777777777663
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.18 E-value=0.0011 Score=54.28 Aligned_cols=92 Identities=7% Similarity=-0.081 Sum_probs=68.3
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCC-------CcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc-----
Q 022131 6 IYGWCKINRIDMAERFLGEMIERG-------VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR----- 73 (302)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----- 73 (302)
+..+.+.|++++|++++++.++.. .+....+++.+..+|.. .|++++|+.++++....
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~----------~g~~~eA~~~~~~~L~i~~~~l 363 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN----------LGLLEEALFYGTRTMEPYRIFF 363 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh----------hccHHHHHHHHHHHHHhHHHHc
Confidence 455668899999999999987641 22235678889999998 77777777777766542
Q ss_pred C-CCC-CHHHHHHHHHHHHhcCCchhHHHHHHHHHh
Q 022131 74 G-IEP-DVTSFSIVLHVYSRAHQPQLSLDKLNFMKE 107 (302)
Q Consensus 74 ~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 107 (302)
| ..| ...+++.|...|...|++++|..++++..+
T Consensus 364 g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2 122 345788889999999999999988887754
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.18 E-value=0.0011 Score=54.47 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022131 187 SYNILIGMFMALNRMDMVREIWNDVK 212 (302)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (302)
+++.|...|...|++++|..++++..
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34555555555555555555555443
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.16 E-value=0.031 Score=42.63 Aligned_cols=106 Identities=13% Similarity=0.135 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCH
Q 022131 166 NGAMKLYRQMKEDGLCVPN---MHSYNILIGMFMAL-----NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK-QKW 236 (302)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 236 (302)
..+...+++..+.. |+ ...|..+...|.+. |+.++|.+.|++....+..-+..++......++.. |+.
T Consensus 180 ~~A~a~lerAleLD---P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACDLW---PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHC---TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHhC---CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 56778888888874 44 67889999999984 99999999999999853322478888888888884 999
Q ss_pred HHHHHHHHHHHHCCCC--CchhhHHHHHHHHhhcchHHHHHHHHHhcc
Q 022131 237 KEACQYFVEMIEKGLL--PQKVTFETLYRGLIQSDMLRTWRRLKKKLD 282 (302)
Q Consensus 237 ~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (302)
+++.+.+++.++.... |+... ...+.-++|..++++..
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~l--------an~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKL--------LVILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHH--------HHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhH--------HHHHHHHHHHHHHHHhH
Confidence 9999999999986555 54332 23334456666665543
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.14 E-value=0.00083 Score=55.10 Aligned_cols=86 Identities=6% Similarity=-0.157 Sum_probs=62.9
Q ss_pred cCCcchHHHHHHHHHhC-----C--CcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc-----C-CCC-
Q 022131 12 INRIDMAERFLGEMIER-----G--VEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR-----G-IEP- 77 (302)
Q Consensus 12 ~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~- 77 (302)
.|++++|+.++++.++. | .+....+++.+..+|.. .|++++|+.++++..+. | -.|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~----------~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 380 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY----------MQDWEGALKYGQKIIKPYSKHYPVYSLN 380 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh----------hcCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 47889999999987653 1 22234688999999999 66777777777766542 2 122
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHh
Q 022131 78 DVTSFSIVLHVYSRAHQPQLSLDKLNFMKE 107 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 107 (302)
...+++.|...|...|++++|..++++..+
T Consensus 381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 381 VASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345788888999999999999988887754
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.10 E-value=0.0068 Score=37.77 Aligned_cols=68 Identities=10% Similarity=-0.047 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---chhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 022131 76 EPDVTSFSIVLHVYSRAHQ---PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNG 144 (302)
Q Consensus 76 ~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 144 (302)
+.|...+..+..++...++ .++|..++++..+.... +......+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3456666666666654444 57777777777776533 66677777777777788888888887777763
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.09 E-value=0.021 Score=43.52 Aligned_cols=97 Identities=9% Similarity=0.087 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHh-----cCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhcc-
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPD---VTSFSIVLHVYSR-----AHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSC- 127 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~- 127 (302)
......|...+++..+. .|+ -..|..+...|.+ -|+.++|.+.|++.++.+..-+..++......+++.
T Consensus 176 l~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 176 PDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT
T ss_pred HHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Confidence 66778888888888887 344 4578888888888 489999999999998876433467777888888884
Q ss_pred CCHHHHHHHHHHHHHCCCC--CChhhHHHH
Q 022131 128 GRIEDAEELLGEMVRNGVC--PSAETYNCF 155 (302)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 155 (302)
|+.+++.+.+++....... |+....+.+
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 8999999999999987655 555444443
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.09 E-value=0.003 Score=51.82 Aligned_cols=93 Identities=6% Similarity=-0.068 Sum_probs=61.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCC---CCC----ChhhHHHHHHHHHccCCchHHHHHHHHHHhC-----CCCCCC-HHH
Q 022131 121 VKCLCSCGRIEDAEELLGEMVRNG---VCP----SAETYNCFFKEYRGRKDANGAMKLYRQMKED-----GLCVPN-MHS 187 (302)
Q Consensus 121 l~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~-~~~ 187 (302)
+.-+.+.|++++|+.++++..+.. +.| ...+++.+..+|...|++++|+.++++.... |...|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334456677888888887776531 112 2456777777888888888887777766432 211232 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022131 188 YNILIGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77778888888888888888777554
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.01 E-value=0.025 Score=50.40 Aligned_cols=130 Identities=9% Similarity=0.112 Sum_probs=71.6
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 022131 83 SIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR 162 (302)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (302)
..++..+.+.|.++.|.++.+. .. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 5555555556665555544421 10 1122334456666666664332 3556677777777777
Q ss_pred CCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 022131 163 KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQY 242 (302)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 242 (302)
++++.|.+.|.++.. |..+...+...|+.+...++-+.....| -++....+|.+.|++++|+++
T Consensus 695 ~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~ 758 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDL 758 (814)
T ss_dssp TCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHH
Confidence 777777777766532 2234444455666666555555554432 223344456667777777777
Q ss_pred HHHH
Q 022131 243 FVEM 246 (302)
Q Consensus 243 ~~~~ 246 (302)
+.++
T Consensus 759 ~~~~ 762 (814)
T 3mkq_A 759 LIKS 762 (814)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 6655
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.00 E-value=0.0062 Score=38.11 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=32.5
Q ss_pred HHHHccCCchHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022131 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMH-SYNILIGMFMALNRMDMVREIWNDVKGS 214 (302)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (302)
..+...|++++|...+++..+.. +.+.. .+..+..++...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455566666666666665553 33445 5555666666666666666666665553
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.90 E-value=0.011 Score=40.39 Aligned_cols=85 Identities=12% Similarity=0.043 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CchhHHHHHHHHHhcCCCc--CHHHHHHHHHHHhccCCHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH---QPQLSLDKLNFMKEKGICP--TVATYSSVVKCLCSCGRIE 131 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~ 131 (302)
...+..+.+-|.+..+.|. ++..+...+..++++++ +.++++.+++...+.+ .| ....+-.+.-+|.+.|+++
T Consensus 11 ~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHH
Confidence 5566777777777776654 57777777777888877 5668888888888764 23 3445556677778888888
Q ss_pred HHHHHHHHHHHC
Q 022131 132 DAEELLGEMVRN 143 (302)
Q Consensus 132 ~a~~~~~~~~~~ 143 (302)
+|.+.++.+.+.
T Consensus 89 ~A~~y~~~lL~i 100 (152)
T 1pc2_A 89 KALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 888888888875
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.88 E-value=0.027 Score=34.97 Aligned_cols=46 Identities=11% Similarity=0.136 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 202 DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
++|..++++..+. -+-++.....+...+.+.|++++|+..|+++.+
T Consensus 26 ~~A~~~l~~AL~~-dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQL-EPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444443 112333334444444444444444444444443
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.87 E-value=0.027 Score=38.44 Aligned_cols=78 Identities=12% Similarity=0.111 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 022131 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALN---RMDMVREIWNDVKGSGLGP--DLDSYTMLIHGLCEKQKWKEACQY 242 (302)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~ 242 (302)
+.+-|.+....+ +++..+...+..++++.+ +.+++..+++...+.. .| +...+-.+.-+|.+.|++++|.+.
T Consensus 17 ~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 17 FEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 344444444444 455555556666666655 4446666666655542 12 234444455556666666666666
Q ss_pred HHHHHH
Q 022131 243 FVEMIE 248 (302)
Q Consensus 243 ~~~~~~ 248 (302)
++.+.+
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666665
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.70 E-value=0.027 Score=35.76 Aligned_cols=25 Identities=4% Similarity=-0.312 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHH
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFM 105 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~ 105 (302)
.+..+...+.+.++++.|...|+..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~A 31 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQA 31 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHH
Confidence 3334444444444444444444444
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.11 Score=36.50 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=20.5
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHH
Q 022131 126 SCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175 (302)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (302)
..|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444433 23444555555555555555555444443
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.57 E-value=0.052 Score=34.42 Aligned_cols=70 Identities=9% Similarity=-0.020 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCch
Q 022131 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGS------GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255 (302)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 255 (302)
+..-+..+...+.+.++++.|...++...+. .-.+....+..+..++.+.|+++.|...++++.+ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 4445556666666777777777776665542 0123456667777777777777777777777765 34544
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.46 E-value=0.073 Score=36.05 Aligned_cols=100 Identities=13% Similarity=0.076 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCCc------hhHHHHHHHHHhcCCCcCHH-HHHHHHHHH------hccCCHHHHHHHHHHHHHCC
Q 022131 78 DVTSFSIVLHVYSRAHQP------QLSLDKLNFMKEKGICPTVA-TYSSVVKCL------CSCGRIEDAEELLGEMVRNG 144 (302)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~------~~~~~~~~a~~~~~~~~~~~ 144 (302)
|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|...+... ...++.++|.++|+.+...+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 556666666666666666 5666666666553 344310 111111111 11244455555555544332
Q ss_pred CCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCC
Q 022131 145 VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDG 179 (302)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (302)
-.. ...|....+.-.+.|+...|.+++......+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 111 3344444444444455555555555544443
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.38 E-value=0.048 Score=48.61 Aligned_cols=45 Identities=9% Similarity=-0.002 Sum_probs=22.8
Q ss_pred HccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022131 160 RGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDV 211 (302)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (302)
...|+++.|.++.+. ..+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~-------~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD-------ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTT-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh-------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555554321 134445555555555555555555555554
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.35 E-value=0.11 Score=34.42 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 022131 186 HSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL 252 (302)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 252 (302)
..+...++.....|.-|+-.++...+.. +.+|++...-.+..+|.+.|+..+|.+++.+..+.|++
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4456666777777777777777777544 24667777777777777777777777777777777653
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.92 E-value=0.18 Score=34.12 Aligned_cols=101 Identities=6% Similarity=0.066 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHhccCCH------HHHHHHHHHHHHCCCCCCh-hhHHHHHHH------HHccCCchHHHHHHHHHHhCC
Q 022131 113 TVATYSSVVKCLCSCGRI------EDAEELLGEMVRNGVCPSA-ETYNCFFKE------YRGRKDANGAMKLYRQMKEDG 179 (302)
Q Consensus 113 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~ 179 (302)
|..+|-..+...-+.|+. ++..++|++.... ++|+. ..|...+.. +...++.++|.++|+.+...+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555555555555655 5566666666554 33331 111111111 112245555555555554442
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 022131 180 LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGL 216 (302)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (302)
+-=...|....+.=.+.|+++.|.+++......+.
T Consensus 91 --KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 91 --KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp --TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 22244444444444555555555555555555443
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.92 E-value=0.19 Score=33.00 Aligned_cols=86 Identities=12% Similarity=0.010 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchh---HHHHHHHHHhcCCC-cCHHHHHHHHHHHhccCCHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQL---SLDKLNFMKEKGIC-PTVATYSSVVKCLCSCGRIED 132 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~ 132 (302)
...+..+.+-|.+....|. |+..+--.+..++.++.+... .+.+++.+.+.+.+ -.....-.+.-++.+.|++++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 4455556666666655543 566666666667777766555 77777777665411 123334455667778888888
Q ss_pred HHHHHHHHHHC
Q 022131 133 AEELLGEMVRN 143 (302)
Q Consensus 133 a~~~~~~~~~~ 143 (302)
|.+.++.+.+.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888887775
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.27 Score=34.47 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=42.1
Q ss_pred HHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022131 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
+......|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+..+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 34456889999999997766 3677899999999999999999999987654
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.87 E-value=0.21 Score=33.19 Aligned_cols=138 Identities=11% Similarity=0.036 Sum_probs=90.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 022131 127 CGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVRE 206 (302)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (302)
.|.+++..++..+.... .+..-+|.++--....-+-+-..++++.+-.. .|. ...|+...+..
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki----FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY----FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----SCG----------GGCSCTHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh----cCc----------HhhhcHHHHHH
Confidence 45666666666665553 34445555554444444444444444444332 111 12344444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccCC
Q 022131 207 IWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 286 (302)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 286 (302)
.+-.+- .+....+..+.....+|+-++-.+++..+.. +-+|++...-.+..||.+.|+..++.+++++.-+.|+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 433322 3556778888899999999999999999644 3578888999999999999999999999999999887
Q ss_pred C
Q 022131 287 T 287 (302)
Q Consensus 287 ~ 287 (302)
.
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 5
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.77 E-value=0.074 Score=34.93 Aligned_cols=78 Identities=13% Similarity=0.100 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 022131 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDM---VREIWNDVKGSGLGP--DLDSYTMLIHGLCEKQKWKEACQY 242 (302)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~ 242 (302)
+.+-|......+ .++..+-..+..++.+..+... ++.+++.+.+.+ .| .....-.+.-++.+.|++++|.+.
T Consensus 20 ~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 20 FEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 333444443433 3555555555556665555444 555566555542 12 223333455556666666666666
Q ss_pred HHHHHH
Q 022131 243 FVEMIE 248 (302)
Q Consensus 243 ~~~~~~ 248 (302)
++.+.+
T Consensus 97 ~~~lL~ 102 (126)
T 1nzn_A 97 VRGLLQ 102 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666665
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.15 Score=44.70 Aligned_cols=130 Identities=13% Similarity=0.072 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhcCC-chhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHC------CCCC-Ch--
Q 022131 81 SFSIVLHVYSRAHQ-PQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR-IEDAEELLGEMVRN------GVCP-SA-- 149 (302)
Q Consensus 81 ~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~-- 149 (302)
....+++.+...++ .+.|..+++++.......+......++..+.+.++ --+|.+++.+..+. ...+ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34556666666766 48899999999887433222223344544444442 23455555554321 1111 11
Q ss_pred --------hhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022131 150 --------ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVK 212 (302)
Q Consensus 150 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (302)
.....=.+.+...|+++.|+.+-++..... +.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 111222345678999999999999998885 6678899999999999999999999998874
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.51 E-value=0.23 Score=40.07 Aligned_cols=73 Identities=12% Similarity=-0.021 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCchhhHHHH
Q 022131 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE-----KGLLPQKVTFETL 261 (302)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~l 261 (302)
...++..+...|+.+++...+..+... .+.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 455667777888888888888877664 355777888888888888888888888887654 3888887664443
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.23 Score=43.64 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=77.5
Q ss_pred HHHHHHHhcCC-cchHHHHHHHHHhCCCcccHHH--HHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHh-------c
Q 022131 4 SLIYGWCKINR-IDMAERFLGEMIERGVEPNVVT--YNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRV-------R 73 (302)
Q Consensus 4 ~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~ 73 (302)
.++..+...|+ .+.|..+|+++... .|.... ...++..+...+ ..+ -+|.+++.+..+ .
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~--------~~E-v~av~ll~~~l~~~~~~~~~ 321 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIE--------TKE-LDMITILNETLDPLLSLLND 321 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCG--------GGH-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhh--------hhh-HHHHHHHHHHHHHhhhhhhh
Confidence 34555555666 58899999999886 343332 223333322211 112 223333333321 1
Q ss_pred CCCCCH----------HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 022131 74 GIEPDV----------TSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEM 140 (302)
Q Consensus 74 ~~~~~~----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 140 (302)
-...+. ...+.-...+...|+++.|+++-++..... +.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 322 l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 322 LPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 111121 122223445667899999999999998874 346779999999999999999999999876
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.88 E-value=0.75 Score=37.10 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=43.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHh-----CCCCCCCHHHH
Q 022131 117 YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKE-----DGLCVPNMHSY 188 (302)
Q Consensus 117 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 188 (302)
...++..+...|+++++...++.+.... +.+...+..+|.++...|+..+|++.|+.+.+ .|. .|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~-~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI-DPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC-CCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC-CCCHHHH
Confidence 4455666666777777776666666543 24666777777777777777777777666533 354 6665543
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.23 E-value=3.1 Score=37.68 Aligned_cols=257 Identities=7% Similarity=-0.022 Sum_probs=122.8
Q ss_pred HHhcCCcchHHHHHHHHHhCCCcccHHHH--HHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCC-------CCCH
Q 022131 9 WCKINRIDMAERFLGEMIERGVEPNVVTY--NVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGI-------EPDV 79 (302)
Q Consensus 9 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~ 79 (302)
....|+.++++.+++.....+-..+..+- ..+.-+....| ...++..++.......- .+..
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag----------~~~~~~~lL~~~L~~~~~~~~~~~~~~i 453 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAG----------FGRDTTDYLKNIIVENSGTSGDEDVDVL 453 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTT----------TTHHHHHHHHHHHHHHSSCCSCHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCC----------CcHHHHHHHHHHHcCccccccccccHHH
Confidence 45567778887777665542101122222 22222233322 11246666665554311 0112
Q ss_pred HHHHHHHHHHHhcCC-chhHHHHHHHHHhcCCCcCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHH--H
Q 022131 80 TSFSIVLHVYSRAHQ-PQLSLDKLNFMKEKGICPTV--ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYN--C 154 (302)
Q Consensus 80 ~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ 154 (302)
..-..+.-+.+-.|. -+++...+..+....- +.. ..-.++...+.-.|+.+....++..+.+.. +..... .
T Consensus 454 r~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aa 529 (963)
T 4ady_A 454 LHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLA 529 (963)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHH
Confidence 222233333332332 2455666665554321 111 111233344556777777777777766541 222222 3
Q ss_pred HHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 022131 155 FFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYN--ILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCE 232 (302)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 232 (302)
+.-++...|+.+.+..+.+.+.... .|....-. .+.-+|+..|+.....++++.+.+. ...++.....+.-++..
T Consensus 530 lgLGll~~g~~e~~~~li~~L~~~~--dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~ 606 (963)
T 4ady_A 530 VGLALINYGRQELADDLITKMLASD--ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVL 606 (963)
T ss_dssp HHHHHHTTTCGGGGHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHT
T ss_pred HHHHhhhCCChHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhc
Confidence 3334457788888888888887653 33333222 3334566778877777788877764 12223322223333344
Q ss_pred cCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchH-HHHHHHHHhccc
Q 022131 233 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKKKLDE 283 (302)
Q Consensus 233 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 283 (302)
.|+.+.+.+++..+.+.+ .|...--..+.-+....|.. .++...+..+..
T Consensus 607 ~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 607 LRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 566555566665544432 33333333333333333332 455556655543
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.77 E-value=0.72 Score=28.77 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022131 183 PNMHSYNILIGMFMALNRMDMVREIWNDVK 212 (302)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (302)
|++....+.+++|-+.+++..|.++++.++
T Consensus 43 P~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 43 PEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444444444444444444333
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.28 E-value=0.89 Score=28.35 Aligned_cols=45 Identities=9% Similarity=0.092 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 022131 98 SLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR 142 (302)
Q Consensus 98 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 142 (302)
..+-++.+....+-|++.+..+.+++|.|.+++..|.++|+-++.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444555555555555555555555555555555543
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.80 E-value=1.4 Score=29.19 Aligned_cols=46 Identities=9% Similarity=0.037 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 022131 97 LSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVR 142 (302)
Q Consensus 97 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 142 (302)
+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444433211223333444445555555555555555544
No 243
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.56 E-value=1.5 Score=29.04 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022131 182 VPNMHSYNILIGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
.|++......+.+|-+.+++..|.++++.++.
T Consensus 85 VPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 85 VPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.09 E-value=6.3 Score=36.93 Aligned_cols=148 Identities=7% Similarity=-0.055 Sum_probs=99.4
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----C---------------
Q 022131 84 IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN----G--------------- 144 (302)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~--------------- 144 (302)
.++..+...+..+.+.++.... +.+...--.+..++...|++++|...|++.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3445555666666655544332 224444455677888999999999999765221 0
Q ss_pred ---CCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 022131 145 ---VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN----MHSYNILIGMFMALNRMDMVREIWNDVKGSGLG 217 (302)
Q Consensus 145 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 217 (302)
...-..-|..++..+.+.+.++.+.++-....+... +.+ ...|..+..++...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~-~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCC-SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 001123477888889999999999988877766532 222 12578889999999999999999988876533
Q ss_pred CCHHHHHHHHHHHHHcCCHHHH
Q 022131 218 PDLDSYTMLIHGLCEKQKWKEA 239 (302)
Q Consensus 218 ~~~~~~~~li~~~~~~g~~~~a 239 (302)
-......++...+..|+.+.-
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhh
Confidence 456677787777766655443
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.91 E-value=7.1 Score=35.42 Aligned_cols=180 Identities=13% Similarity=0.101 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHH--HHHHhccCCHHHHHHH
Q 022131 61 RNAEKVFDEMRVRGIEPDVTSFS--IVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSV--VKCLCSCGRIEDAEEL 136 (302)
Q Consensus 61 ~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~ 136 (302)
+++.+.+..+.... .+...... .|...+...|+.+....++..+.+.. +..+...+ .-++...|+.+.+..+
T Consensus 471 eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~l 546 (963)
T 4ady_A 471 IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDL 546 (963)
T ss_dssp HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHH
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHH
Confidence 34555666655532 11111122 23344556777777777777776542 33333333 3344477899999999
Q ss_pred HHHHHHCCCCCChhhH--HHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022131 137 LGEMVRNGVCPSAETY--NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214 (302)
Q Consensus 137 ~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (302)
++.+.... .|....- .++.-+|+..|+.....+++..+.... ..++.....+.-+....|+.+.+.++++.+.+.
T Consensus 547 i~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~--~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~ 623 (963)
T 4ady_A 547 ITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS--NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS 623 (963)
T ss_dssp HHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc
Confidence 99888641 1222222 233446778889888888999988763 334443333334455567777778887766665
Q ss_pred CCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 022131 215 GLGPDLDSYTMLIHGLCEKQKW-KEACQYFVEMIE 248 (302)
Q Consensus 215 ~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~ 248 (302)
+ .|.+..-..+.-+....|.. .++++++..+..
T Consensus 624 ~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 624 H-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp S-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred C-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 3 34444444444444545543 677888888764
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.64 E-value=2 Score=28.44 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCch
Q 022131 182 VPNMHSYNILIGMFMALNRM---DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255 (302)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 255 (302)
.|+..+--....++.+..+. ..++.+++.+.+.+..-....+-.+.-++.+.|++++|.++.+.+.+ +.|+-
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 46666655555566655443 35566666665543111234455566666777777777777777765 34543
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.53 E-value=2 Score=28.41 Aligned_cols=49 Identities=12% Similarity=0.248 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhC
Q 022131 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKED 178 (302)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (302)
.-+..+-++.+...++.|++....+.+++|.+.+++..|.++++-++..
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3344444445544555555555555555555555555555555555544
No 248
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.19 E-value=0.032 Score=45.86 Aligned_cols=213 Identities=11% Similarity=0.058 Sum_probs=130.8
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
|.-+|.+..+.|++++-+..+....+..-.| ..=+.|+-+|++.+++.+.+.+. -.||..-
T Consensus 86 y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~~rL~elEefl-----------------~~~N~A~ 146 (624)
T 3lvg_A 86 YMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFI-----------------NGPNNAH 146 (624)
T ss_dssp SSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTSCSSSTTTSTT-----------------SCCSSSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhhCcHHHHHHHH-----------------cCCCccc
Confidence 5567778888888888888886665553333 33457888888877765543330 1234444
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhc--------------------CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFMKEK--------------------GICPTVATYSSVVKCLCSCGRIEDAEELLGEMV 141 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 141 (302)
...+..-|...|.++.|.-+|..+..- .-.-+..||..+-.+|...+.+.-|.-.--.+.
T Consensus 147 iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI 226 (624)
T 3lvg_A 147 IQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV 226 (624)
T ss_dssp THHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc
Confidence 444555555555555555444433111 012256678888888888887776655544444
Q ss_pred HCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC--
Q 022131 142 RNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS-GLGP-- 218 (302)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-- 218 (302)
-. +.....++..|-..|.+++.+.+++.-.... ......|+-|.-.|++- ++++..+.++..-.+ +++-
T Consensus 227 vh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE--rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvi 298 (624)
T 3lvg_A 227 VH-----ADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVL 298 (624)
T ss_dssp CC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST--TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTH
T ss_pred cc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC--chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHH
Confidence 22 2223345666788899999999888887544 67888899988888876 345544444432221 2221
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHHHH
Q 022131 219 ----DLDSYTMLIHGLCEKQKWKEACQ 241 (302)
Q Consensus 219 ----~~~~~~~li~~~~~~g~~~~a~~ 241 (302)
....|.-++-.|.+-.+++.|..
T Consensus 299 racE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 299 RAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 34567778888888888876654
No 249
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.07 E-value=7.4e-05 Score=60.76 Aligned_cols=238 Identities=10% Similarity=0.015 Sum_probs=133.5
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS 81 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (302)
|+.|-.+..+.+++.+|++-|-+. -|+..|..++.+..+ .+.+++-.+.+....+..- +...
T Consensus 57 Ws~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~----------~~~~edLv~yL~MaRk~~k--e~~I 118 (624)
T 3lvg_A 57 WSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANT----------SGNWEELVKYLQMARKKAR--ESYV 118 (624)
T ss_dssp SSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTT----------SSCCTTHHHHHHTTSTTCC--STTT
T ss_pred HHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHhc--cccc
Confidence 555556666666666665544211 145556677777766 3444445555544443322 3333
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC------------------
Q 022131 82 FSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN------------------ 143 (302)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------------------ 143 (302)
=+.|+-+|++.++..+..+++. .|+..-...+.+-|...|.++.|.-+|..+...
T Consensus 119 DteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVd 191 (624)
T 3lvg_A 119 ETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVD 191 (624)
T ss_dssp THHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTT
T ss_pred HHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777655443322 133333445555555555555555554433211
Q ss_pred --CCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 022131 144 --GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD 221 (302)
Q Consensus 144 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 221 (302)
.-..++.||-.+-.+|...+++.-|.-.--.+.-.. + -...++..|...|.+++.+.+++.-... -.....
T Consensus 192 aArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvha----d--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmG 264 (624)
T 3lvg_A 192 GARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA----D--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMG 264 (624)
T ss_dssp TTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS----S--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHH
T ss_pred HHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccH----H--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHH
Confidence 012467788888888888888877655544444321 1 1234677788889999988888887754 346778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHH
Q 022131 222 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK 278 (302)
Q Consensus 222 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 278 (302)
.|+-|.-.|++- ++++..+.++..-. +. -.-.++++|.+...|.++.=++
T Consensus 265 mFTELaILYsKY-~PeKlmEHlklf~s---ri---NipKviracE~ahLW~ElvfLY 314 (624)
T 3lvg_A 265 MFTELAILYSKF-KPQKMREHLELFWS---RV---NIPKVLRAAEQAHLWAELVFLY 314 (624)
T ss_dssp HHHHHHHHHHSS-CTTHHHHHHTTSSS---SS---CCTTTHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHH---hc---cHHHHHHHHHHHhhHHHHHHHH
Confidence 888888888775 45554444433211 11 1223455555555555444443
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.93 E-value=5.9 Score=32.60 Aligned_cols=190 Identities=10% Similarity=0.091 Sum_probs=118.5
Q ss_pred cCCchhHHHHHHHHHhc-----CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----cc
Q 022131 92 AHQPQLSLDKLNFMKEK-----GICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYR----GR 162 (302)
Q Consensus 92 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 162 (302)
.|+++.|++.+-.+.+. +...+......++..|...|+++...+.+..+.+.... .......+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 47888898887766543 34456777889999999999999998888777654222 2233344444332 23
Q ss_pred CCchHH--HHHHHHHH--hCCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHH
Q 022131 163 KDANGA--MKLYRQMK--EDGLCVP---NMHSYNILIGMFMALNRMDMVREIWNDVKGS--GLGPD---LDSYTMLIHGL 230 (302)
Q Consensus 163 ~~~~~a--~~~~~~~~--~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~ 230 (302)
...+.. ..+...+. ..|..-. .......|...+...|++.+|.+++..+... |..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 332221 11111111 1111111 2234467788899999999999999997642 22111 35677788899
Q ss_pred HHcCCHHHHHHHHHHHHHC----CCCCch--hhHHHHHHHHhhcchHHHHHHHHHhcc
Q 022131 231 CEKQKWKEACQYFVEMIEK----GLLPQK--VTFETLYRGLIQSDMLRTWRRLKKKLD 282 (302)
Q Consensus 231 ~~~g~~~~a~~~~~~~~~~----~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (302)
...+++.+|..++.++... ...|+. ..+...+..+...+++.+|.+.|.+.-
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999999987532 112221 334555666777788887777666543
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.92 E-value=5.2 Score=32.70 Aligned_cols=100 Identities=9% Similarity=-0.050 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcC--CCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC---CCCCChhh--H
Q 022131 80 TSFSIVLHVYSRAHQPQLSLDKLNFMKEKG--ICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN---GVCPSAET--Y 152 (302)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 152 (302)
.+...+...|.+.|+++.|.+.+.++.... ..--...+-..++.+...+++..+...+++.... +..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356778899999999999999999997752 3334567888899999999999999999887643 22222211 1
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHhCC
Q 022131 153 NCFFKEYRGRKDANGAMKLYRQMKEDG 179 (302)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (302)
..-...+...+++..|...|-+.....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 111223456788999888888776554
No 252
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.41 E-value=6 Score=31.88 Aligned_cols=166 Identities=11% Similarity=0.066 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhc-CCCc---CHHHHHHHHHHHhccC-CHHHHHHHHHHHHHCCCCCChhhH--
Q 022131 80 TSFSIVLHVYSRAHQPQLSLDKLNFMKEK-GICP---TVATYSSVVKCLCSCG-RIEDAEELLGEMVRNGVCPSAETY-- 152 (302)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~-- 152 (302)
.....|...|.+.|+.++..+++...... +.-+ .......++..+.... ..+.-.++..+..+..- -...+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34566788888888888888887766432 1111 3344667777777643 34444444444443211 111233
Q ss_pred ----HHHHHHHHccCCchHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH
Q 022131 153 ----NCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN-----MHSYNILIGMFMALNRMDMVREIWNDVKGS--GLGPDLD 221 (302)
Q Consensus 153 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 221 (302)
..++..|...|++.+|..++..+.+.-. ..| ..++..-++.|...++..++...+...... .+.+++.
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~-~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELK-KLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 3678888999999999888888876422 212 334555667788889999998888776542 2324443
Q ss_pred HHHHH----HHHHH-HcCCHHHHHHHHHHHH
Q 022131 222 SYTML----IHGLC-EKQKWKEACQYFVEMI 247 (302)
Q Consensus 222 ~~~~l----i~~~~-~~g~~~~a~~~~~~~~ 247 (302)
.-..+ ...+. ..++|..|...|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 32222 12234 6788888888776653
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.37 E-value=6.6 Score=32.29 Aligned_cols=191 Identities=7% Similarity=0.073 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHH----hcc
Q 022131 57 EKTIRNAEKVFDEMRVR-----GIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL----CSC 127 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~ 127 (302)
.++++.|++.+-.+.+. +...+......++..|...++++...+.+..+....... ......+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 56677777776665532 244466778889999999999999888777665442221 22233344333 222
Q ss_pred CCHHH--HHHHHHHHHHC--C-CCC---ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCC----HHHHHHHHHHH
Q 022131 128 GRIED--AEELLGEMVRN--G-VCP---SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPN----MHSYNILIGMF 195 (302)
Q Consensus 128 ~~~~~--a~~~~~~~~~~--~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~ 195 (302)
...+. -..+.+.+... | +-. .......|...+...|++.+|.+++..+...-....+ ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32222 11222111110 1 111 1234467788899999999999999998643210122 34566778889
Q ss_pred HhcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 196 MALNRMDMVREIWNDVKG----SGLGPD--LDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
...+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999988643 212222 24566777778888999988888877653
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.98 E-value=6.6 Score=36.76 Aligned_cols=125 Identities=12% Similarity=-0.029 Sum_probs=81.9
Q ss_pred ChhhHHHHHHHHHccCCchHHHHHHHHHHhCCC---------------------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 022131 148 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL---------------------CVPNMHSYNILIGMFMALNRMDMVRE 206 (302)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (302)
++...-.+..++...|++++|.+.|.+.-..-. ...-..-|..++..+.+.+.++.+.+
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444444566778899999999999976521100 01112346777888888888888888
Q ss_pred HHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHH
Q 022131 207 IWNDVKGSGLGPDL----DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTW 274 (302)
Q Consensus 207 ~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 274 (302)
+-....+...+.+. ..|..+.+++...|++++|...+-.+.+...+ ...+..|+..++..|..+..
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhh
Confidence 87776654222221 25788889999999999999888877654332 35566677666666554443
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.54 E-value=2.7 Score=29.01 Aligned_cols=30 Identities=7% Similarity=-0.171 Sum_probs=20.6
Q ss_pred HHHHHHHhhcchHHHHHHHHHhccccCCCc
Q 022131 259 ETLYRGLIQSDMLRTWRRLKKKLDEESITF 288 (302)
Q Consensus 259 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 288 (302)
-.+..++.+.++.++|..+++.+....-++
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~ 155 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIPSRQRTP 155 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCGGGCCH
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCCchhcCH
Confidence 335667778888888888887765554444
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.49 E-value=6.4 Score=30.83 Aligned_cols=99 Identities=20% Similarity=0.087 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCch-hHHHHHHHH----HhcC--CCcCHHHHHHHHHHHhccCCHHHH
Q 022131 61 RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ-LSLDKLNFM----KEKG--ICPTVATYSSVVKCLCSCGRIEDA 133 (302)
Q Consensus 61 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~ll~~~~~~~~~~~a 133 (302)
+-+.-+.+-..+.++++|......++..+.....-+ .-.++++.+ .+.| ..-|+.....+...|.+.+++.+|
T Consensus 76 DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~A 155 (336)
T 3lpz_A 76 DLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAA 155 (336)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 445455566666777888888888887776655322 112233332 2222 334677778888888888888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 022131 134 EELLGEMVRNGVCPSAETYNCFFKEYRGRK 163 (302)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 163 (302)
+..|- .|..++...+..++.-+...+
T Consensus 156 e~H~i----lg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 156 EKHLV----LGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HHHHT----TSCTTHHHHHHHHHHHHHHTS
T ss_pred HHHHH----hcCCchHHHHHHHHHHHHHhc
Confidence 77662 233333456655554444333
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.30 E-value=3.6 Score=27.62 Aligned_cols=67 Identities=7% Similarity=-0.004 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHhcCCc---hhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 022131 77 PDVTSFSIVLHVYSRAHQP---QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRN 143 (302)
Q Consensus 77 ~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 143 (302)
|+..+--.+..++.++.+. .+++.+++.+.+.+..-.....-.+.-++.+.|++++|.+..+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4444444444444444432 345555555555432222333334445566666666666666666654
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.85 E-value=6.1 Score=32.29 Aligned_cols=98 Identities=9% Similarity=-0.021 Sum_probs=69.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHH--
Q 022131 116 TYSSVVKCLCSCGRIEDAEELLGEMVRN--GVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNIL-- 191 (302)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-- 191 (302)
+...+...|.+.|+++.|.+.+.++... +...-...+-.+++.+...+++..+...+.++...-...++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5677899999999999999999999875 233345678888999999999999999998875432112332222221
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHh
Q 022131 192 --IGMFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 192 --~~~~~~~~~~~~a~~~~~~~~~ 213 (302)
...+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 1123356888888887777654
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.83 E-value=6.9 Score=30.34 Aligned_cols=78 Identities=9% Similarity=-0.021 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCch-hHHHHHHHH----HhcC--CCcCHHHHHHHHHHHhccCCHHHH
Q 022131 61 RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQ-LSLDKLNFM----KEKG--ICPTVATYSSVVKCLCSCGRIEDA 133 (302)
Q Consensus 61 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~ll~~~~~~~~~~~a 133 (302)
+-+.-+.+-..+.+.+++......++..+......+ .-.++++.+ .+.| ..-++.....+...|.+.|++.+|
T Consensus 74 DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A 153 (312)
T 2wpv_A 74 DLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEA 153 (312)
T ss_dssp HHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHH
Confidence 334445555566677777777777777765533221 123333333 2222 123666777777777777777777
Q ss_pred HHHHH
Q 022131 134 EELLG 138 (302)
Q Consensus 134 ~~~~~ 138 (302)
+..|-
T Consensus 154 ~~H~i 158 (312)
T 2wpv_A 154 ERYFM 158 (312)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 260
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=86.60 E-value=7.1 Score=27.97 Aligned_cols=54 Identities=7% Similarity=0.028 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 022131 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218 (302)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 218 (302)
.....++|..|...++..--...|..-...+...|++.+|.++|+.-++.+..|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 446666666666665545555556666666666666666666666666665555
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.47 E-value=5.4 Score=27.54 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=11.3
Q ss_pred HHHHHHHHccCCchHHHHHHHHH
Q 022131 153 NCFFKEYRGRKDANGAMKLYRQM 175 (302)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~ 175 (302)
..+.+++...+++..|...|++.
T Consensus 67 ~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 67 VYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 34444445555555555555543
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.20 E-value=6.6 Score=26.34 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 182 VPNMHSYNILIGMFMALNRM---DMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
.|+..+--....++.+..+. .++..+++.+...+..-.....-.+.-++.+.|++++|.++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555555555555555443 34555555555432211233334455566666666666666666665
No 263
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.48 E-value=16 Score=29.43 Aligned_cols=169 Identities=6% Similarity=-0.093 Sum_probs=105.8
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhC-CCcc---cHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCC-CC
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIER-GVEP---NVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIE-PD 78 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 78 (302)
.|...|.+.|+.++..+++.....- +.-| .......+++.+....... ...++-..+.++......-. ..
T Consensus 24 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 24 QQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGT-----GIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCH-----HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999998876543 2122 3344667777776642211 33445555555555443100 00
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCC-----cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCChhh
Q 022131 79 VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGIC-----PTVATYSSVVKCLCSCGRIEDAEELLGEMVRN--GVCPSAET 151 (302)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 151 (302)
...=..++..|...|++.+|.+++..+.+.--. .-...+..-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 011236788999999999999999988764111 12345666778888999999999999887643 22233332
Q ss_pred HHHH----HHHHH-ccCCchHHHHHHHHHHh
Q 022131 152 YNCF----FKEYR-GRKDANGAMKLYRQMKE 177 (302)
Q Consensus 152 ~~~l----~~~~~-~~~~~~~a~~~~~~~~~ 177 (302)
...+ ...+. ..+++..|...|-+..+
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 2211 22345 78999999888877653
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.95 E-value=14 Score=27.81 Aligned_cols=114 Identities=11% Similarity=0.037 Sum_probs=77.9
Q ss_pred HHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHH
Q 022131 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD----LDSYTMLIHGLCE 232 (302)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~ 232 (302)
....+.|+.++++.....-.+.. +-|...-..+++.+|-.|+++.|.+-++...+. .|+ ...|..+|.+=
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHH--
Confidence 45678899999999988888886 788888899999999999999999998888774 333 33444444431
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-----chhhHHHHHHHHh--hcchHHHHHHHHHhcccc
Q 022131 233 KQKWKEACQYFVEMIEKGLLP-----QKVTFETLYRGLI--QSDMLRTWRRLKKKLDEE 284 (302)
Q Consensus 233 ~g~~~~a~~~~~~~~~~~~~p-----~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 284 (302)
..=.+...-+-.| ...-...++.+.. ..|+.++|..+..+..+.
T Consensus 79 --------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 --------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp --------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1111222222222 2234455666555 568999999998887554
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.73 E-value=13 Score=26.58 Aligned_cols=56 Identities=23% Similarity=0.199 Sum_probs=39.9
Q ss_pred CCchhHHHHHHHHHhcCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 022131 93 HQPQLSLDKLNFMKEKGICP-TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148 (302)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 148 (302)
+....+..+|..|...|+-. -...|......+...|++.+|..+|+.-++.+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 33567788888887775432 355577777777888888888888888887766553
No 266
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=79.57 E-value=8.6 Score=26.53 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 022131 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218 (302)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 218 (302)
..++|..|...++..--...|..-...+...|++.+|.++|+.-++.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 334444444444433334444444444444455555555555444444444
No 267
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=78.22 E-value=18 Score=26.69 Aligned_cols=22 Identities=18% Similarity=-0.102 Sum_probs=15.8
Q ss_pred HHHHHhcCCcchHHHHHHHHHh
Q 022131 6 IYGWCKINRIDMAERFLGEMIE 27 (302)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~ 27 (302)
++.+....+|++|.+++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4566777788888888777654
No 268
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=78.06 E-value=14 Score=25.16 Aligned_cols=51 Identities=10% Similarity=0.140 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 022131 168 AMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218 (302)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 218 (302)
..++|..|...++..--...|..-...+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 555555555555444445555555555555566666666666555554444
No 269
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.45 E-value=12 Score=31.44 Aligned_cols=66 Identities=8% Similarity=0.055 Sum_probs=41.0
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhc
Q 022131 2 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVR 73 (302)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 73 (302)
+|.++..|...+.++.|..+..+..- +.+...-+....-+.-.|++... .+++.+|.+.+......
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~~f---P~~~~sn~q~~rY~YY~GRI~a~---q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKLEY---PHTDVSSSLEARYFFYLSKINAI---QLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHHCS---CTTTSCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHccCcHHHHHHHHhcCcC---CcccCCHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHh
Confidence 68899999999999999999988742 21211222222222221111111 66788888888887765
No 270
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.37 E-value=1.9 Score=32.50 Aligned_cols=246 Identities=12% Similarity=0.102 Sum_probs=108.6
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCcccH----HHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCH
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIERGVEPNV----VTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDV 79 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 79 (302)
+.+...++.|+++.+..++ +.|..++. .-++.+.. .+. .++. ++++.+.+.|..++.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~-A~~----------~g~~----~~v~~Ll~~g~~~~~ 67 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHN-AVQ----------MSRE----DIVELLLRHGADPVL 67 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHH-HHH----------TTCH----HHHHHHHHTTCCTTC
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHH-HHH----------cCCH----HHHHHHHHcCCCCcc
Confidence 4566667788876555554 44433332 22233333 333 2333 344555555554432
Q ss_pred H--HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChh----
Q 022131 80 T--SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV---ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAE---- 150 (302)
Q Consensus 80 ~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 150 (302)
. .-.+.+...+..|+.+ +++.+.+.|..++. .-.+ .+...+..|+.+- ++.+.+.|..++..
T Consensus 68 ~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~ 138 (285)
T 1wdy_A 68 RKKNGATPFLLAAIAGSVK----LLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKA----LKFLYKRGANVNLRRKTK 138 (285)
T ss_dssp CCTTCCCHHHHHHHHTCHH----HHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHH----HHHHHHTTCCTTCCCCCC
T ss_pred cCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHH----HHHHHHhCCCcccccccH
Confidence 1 1112333444556544 44455555544331 1122 2333445566543 44445555443321
Q ss_pred ---------hHHHHHHHHHccCCchHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 022131 151 ---------TYNCFFKEYRGRKDANGAMKLYRQMKEDGL--CVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPD 219 (302)
Q Consensus 151 ---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (302)
-.+. +...+..|+.+-+..+++.. +. ...+....+.+. ..+..+......++.+.+.+.|..++
T Consensus 139 ~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 139 EDQERLRKGGATA-LMDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHTTCCCCCH-HHHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHHhhccCCCcH-HHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCC
Confidence 1122 23334556654444433321 21 012222223333 33445665555667777777776654
Q ss_pred HHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchh---hHHHHHHHHhhcchHHHHHHHHHhccccCCCccc
Q 022131 220 LDS--YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV---TFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290 (302)
Q Consensus 220 ~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 290 (302)
... -...+...+..|+.+-+..+++. .|..++.. -.+.+ ....+.|..+ +.+.+.+.|..++.
T Consensus 214 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~l-~~A~~~~~~~----i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 214 VRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTAL-LLAVELKLKK----IAELLCKRGASTDC 281 (285)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHHSSCSCC
T ss_pred CcCCCCCcHHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcHH-HHHHHcCcHH----HHHHHHHcCCCCCc
Confidence 321 11233444566776554444331 44444322 22222 3334455543 34445555655543
No 271
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=75.96 E-value=28 Score=27.64 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcc--hHHHHHHHHHhccccCCC
Q 022131 223 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD--MLRTWRRLKKKLDEESIT 287 (302)
Q Consensus 223 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~ 287 (302)
.+.++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.+ ..+...+++..+.+.|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 466677777777888888777777321111 1223334444444432 345566666666655543
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.12 E-value=12 Score=23.24 Aligned_cols=7 Identities=14% Similarity=-0.102 Sum_probs=2.6
Q ss_pred cCCchhH
Q 022131 92 AHQPQLS 98 (302)
Q Consensus 92 ~~~~~~a 98 (302)
.|++++|
T Consensus 52 rG~Yq~A 58 (115)
T 2uwj_G 52 QGRYQEA 58 (115)
T ss_dssp TTCHHHH
T ss_pred chhHHHH
Confidence 3333333
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.13 E-value=13 Score=23.14 Aligned_cols=77 Identities=12% Similarity=0.019 Sum_probs=41.2
Q ss_pred CchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 022131 164 DANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243 (302)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 243 (302)
..++|..|-+.+...+ . ...+-.+-+..+...|++++|..+.+... .||...|-.|-. .+.|..+++..-+
T Consensus 22 ~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 4466666666666553 2 22222233445556677776666655432 466666654433 3566666666655
Q ss_pred HHHHHC
Q 022131 244 VEMIEK 249 (302)
Q Consensus 244 ~~~~~~ 249 (302)
.++-.+
T Consensus 93 ~~la~s 98 (116)
T 2p58_C 93 NRLARS 98 (116)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 555443
No 274
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=73.05 E-value=16 Score=26.36 Aligned_cols=187 Identities=10% Similarity=0.025 Sum_probs=84.1
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCcCHHH--HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHH
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKGICPTVAT--YSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA---ETYNCFFKEY 159 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~ 159 (302)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++. .-.+. +...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTA-AHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCH-HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCH-HHHH
Confidence 34455667888777777776666654433211 112333445566654 34444555544432 12222 3333
Q ss_pred HccCCchHHHHHHHHHHhCC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcC
Q 022131 160 RGRKDANGAMKLYRQMKEDG--LCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS---YTMLIHGLCEKQ 234 (302)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g 234 (302)
+..|+.+-+..+++.....+ ....+....+. +...+..|+.+.+..++ +.|..++... -...+...+..|
T Consensus 87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQETVQLLL----ERGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHHHHHHHH----HcCCCcccccccCCCcHHHHHHHcC
Confidence 45666655555544432110 00112222222 33344566665544444 3444433211 122334445667
Q ss_pred CHHHHHHHHHHHHHCCCCCchhh--HHHHHHHHhhcchHHHHHHHHHhccccCCCcc
Q 022131 235 KWKEACQYFVEMIEKGLLPQKVT--FETLYRGLIQSDMLRTWRRLKKKLDEESITFG 289 (302)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 289 (302)
+.+- ++.+.+.|..++... -...+......|..+-+..+ .+.|..++
T Consensus 162 ~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~ga~~~ 210 (241)
T 1k1a_A 162 SLSM----VQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL----VRSGADSS 210 (241)
T ss_dssp CHHH----HHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHH----HHTTCCTT
T ss_pred CHHH----HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH----HhcCCCCC
Confidence 7654 344445565554321 11223334556665544444 34455443
No 275
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=72.59 E-value=24 Score=26.04 Aligned_cols=92 Identities=9% Similarity=0.015 Sum_probs=53.1
Q ss_pred HHHHHHHccCCchHHHHHHHHHHhC--CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 022131 154 CFFKEYRGRKDANGAMKLYRQMKED--GLCVP---NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIH 228 (302)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 228 (302)
--++.+....++++|..++++..+. +...+ ........+..-.....-.-+..+.+.+.. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3467778888888888888776543 11011 112222333333333333444445555532 455666677777
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 022131 229 GLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 229 ~~~~~g~~~~a~~~~~~~~~ 248 (302)
.+.+.|+.++|.++|-+.+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 88888888888888877654
No 276
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=71.76 E-value=13 Score=27.15 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 022131 167 GAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP 218 (302)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 218 (302)
...++|..|...++..--...|..-...+...|++.+|.++|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3344444444444433334444444444444444444444444444443333
No 277
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=69.37 E-value=18 Score=22.57 Aligned_cols=76 Identities=11% Similarity=0.011 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 022131 165 ANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFV 244 (302)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 244 (302)
.++|..|-+.+...+ . ...+-.+-+..+...|++++|..+.+... .||...|-.|-. .+.|..+++..-+.
T Consensus 22 HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 22 HEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp HHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 345555555554443 1 22222222334455556655555444332 355555544432 35555555555554
Q ss_pred HHHHC
Q 022131 245 EMIEK 249 (302)
Q Consensus 245 ~~~~~ 249 (302)
++-.+
T Consensus 93 ~la~s 97 (115)
T 2uwj_G 93 GLGGS 97 (115)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 44443
No 278
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=68.22 E-value=19 Score=22.47 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 022131 129 RIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIW 208 (302)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (302)
..++|..+-+-+...+. ...+-.+-+..+...|++++|..+.+.+ +.||...|..|.. .+.|..+++..-+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL-----AYPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS-----CCGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 44555555555544322 1111111222344555555555544322 2455554444422 3445555555444
Q ss_pred HHHHhC
Q 022131 209 NDVKGS 214 (302)
Q Consensus 209 ~~~~~~ 214 (302)
..+..+
T Consensus 93 ~~la~s 98 (116)
T 2p58_C 93 NRLARS 98 (116)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 444443
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=67.52 E-value=26 Score=23.78 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHhcCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 022131 96 QLSLDKLNFMKEKGICP-TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPS 148 (302)
Q Consensus 96 ~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 148 (302)
+.+..+|..|...|+-. -...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 44777777777775432 344567777777777888888888887777765553
No 280
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=66.42 E-value=7 Score=28.31 Aligned_cols=56 Identities=11% Similarity=0.006 Sum_probs=27.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhH--HHHHHHHhhcchHHHHHHHHHhccccC
Q 022131 226 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF--ETLYRGLIQSDMLRTWRRLKKKLDEES 285 (302)
Q Consensus 226 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (302)
.+...+..|+.+-+..+ .+.|..++.... ...+....+.|+.+-+..+++...+.+
T Consensus 180 ~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 180 ALHWAVLAGNTTVISLL----LEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHHHHHTCHHHHHHH----HHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 34445567776644433 444555543211 123445567777777777766655544
No 281
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=64.38 E-value=30 Score=23.32 Aligned_cols=14 Identities=7% Similarity=0.017 Sum_probs=5.6
Q ss_pred chhHHHHHHHHHhc
Q 022131 95 PQLSLDKLNFMKEK 108 (302)
Q Consensus 95 ~~~a~~~~~~~~~~ 108 (302)
.-.|.++++.+.+.
T Consensus 42 ~~sa~ei~~~l~~~ 55 (150)
T 2xig_A 42 HLSPEEITHSIRQK 55 (150)
T ss_dssp CBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 33344444444333
No 282
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=64.26 E-value=50 Score=25.89 Aligned_cols=95 Identities=8% Similarity=0.052 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH-
Q 022131 3 TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTS- 81 (302)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 81 (302)
..++.-|...|+.++|...++++...... ...+...+..++-+. ...-+.+..++..+.+.|+-+....
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~---------~~~re~~~~Ll~~L~~~~~is~~~~~ 84 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERS---------AIAREHMGQLLHQLLCAGHLSTAQYY 84 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTC---------HHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 46888999999999999988887532111 111222222222221 3445667777888877665433333
Q ss_pred --HHHHHHHHHhc-CCchhHHHHHHHHHh
Q 022131 82 --FSIVLHVYSRA-HQPQLSLDKLNFMKE 107 (302)
Q Consensus 82 --~~~ll~~~~~~-~~~~~a~~~~~~~~~ 107 (302)
|..++...-.. =|...|...+..+..
T Consensus 85 ~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~ 113 (339)
T 1ug3_A 85 QGLYEILELAEDMEIDIPHVWLYLAELVT 113 (339)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHHHHHG
T ss_pred HHHHHHHhhChHhhcCccchHHHHHHHHH
Confidence 22222222221 144555555555543
No 283
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=62.31 E-value=30 Score=23.10 Aligned_cols=8 Identities=13% Similarity=0.513 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 022131 133 AEELLGEM 140 (302)
Q Consensus 133 a~~~~~~~ 140 (302)
|.++++.+
T Consensus 40 a~ei~~~l 47 (145)
T 2fe3_A 40 ADDIYKAL 47 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 284
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=61.97 E-value=53 Score=25.39 Aligned_cols=76 Identities=8% Similarity=0.081 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCchhhHHHHHHHH
Q 022131 189 NILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK--WKEACQYFVEMIEKGLLPQKVTFETLYRGL 265 (302)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 265 (302)
..++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+.+.|+.+.......+-+.+
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 55666777777777777777777531110 11222233333333222 345666777776666555444433333333
No 285
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=61.63 E-value=40 Score=23.82 Aligned_cols=171 Identities=8% Similarity=-0.113 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 022131 77 PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156 (302)
Q Consensus 77 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 156 (302)
++...-...+..+.+.++. .+...+..+... ++...-...+.++.+.++.+ +...+..+.. .++...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 4666666667777777763 444444444443 46666666777777777643 3344444443 26777777778
Q ss_pred HHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 022131 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236 (302)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 236 (302)
.++...++.+.. ..+..+.. .++..+-...+.++.+.+..+ +...+..+.+ .++..+-...+.++.+.+.
T Consensus 103 ~aL~~~~~~~~~-~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~- 172 (211)
T 3ltm_A 103 VALGQIGDERAV-EPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG- 172 (211)
T ss_dssp HHHHHHCCGGGH-HHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-
T ss_pred HHHHHhCcHHHH-HHHHHHHh----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-
Confidence 888888775444 44444443 467677777777888777654 4444444543 3577777777888887776
Q ss_pred HHHHHHHHHHHHCCCCCchhhHHHHHHHHhhc
Q 022131 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268 (302)
Q Consensus 237 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 268 (302)
..+...+..+.+. ++..+-...+.++...
T Consensus 173 ~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 173 ERVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 4455555555542 4444444445554443
No 286
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=61.48 E-value=35 Score=23.13 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=16.1
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHH
Q 022131 152 YNCFFKEYRGRKDANGAMKLYRQMK 176 (302)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (302)
...++.-|...|+.++|.+.++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4556666666667777766666664
No 287
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=60.72 E-value=57 Score=25.31 Aligned_cols=139 Identities=12% Similarity=0.030 Sum_probs=69.7
Q ss_pred HHhcCCchhHHH----HHHHHHhcCCCcCHHHHHHHHHHHhccCCHH-HHHHHHHHHHH----CC--CCCChhhHHHHHH
Q 022131 89 YSRAHQPQLSLD----KLNFMKEKGICPTVATYSSVVKCLCSCGRIE-DAEELLGEMVR----NG--VCPSAETYNCFFK 157 (302)
Q Consensus 89 ~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~ 157 (302)
+.+.|+...|-+ +++-..+.+.+++......++..+.....-+ .=.++++++.+ .| ...++.....+..
T Consensus 63 ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~ 142 (312)
T 2wpv_A 63 FLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGS 142 (312)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 444555544443 3444555677777777777777766543211 12333333332 22 2235566667777
Q ss_pred HHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 022131 158 EYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMAL---NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQ 234 (302)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 234 (302)
.|.+.+++.+|...|-. +. ..|...+..++.-+... |...++--+ . ...+-.|...|
T Consensus 143 ~~~~e~~~~~A~~H~i~----~~-~~s~~~~a~~l~~w~~~~~~~~~~e~dlf--------------~-~RaVL~yL~l~ 202 (312)
T 2wpv_A 143 KLLEGDFVYEAERYFML----GT-HDSMIKYVDLLWDWLCQVDDIEDSTVAEF--------------F-SRLVFNYLFIS 202 (312)
T ss_dssp HHHHTTCHHHHHHHHHT----SC-HHHHHHHHHHHHHHHHHTTCCCHHHHHHH--------------H-HHHHHHHHHTT
T ss_pred HHhhcCCHHHHHHHHHh----CC-CccHHHHHHHHHHHHHhcCCCCcchHHHH--------------H-HHHHHHHHHhc
Confidence 77777777776665531 10 11334444444433333 332222111 1 11222345567
Q ss_pred CHHHHHHHHHHHH
Q 022131 235 KWKEACQYFVEMI 247 (302)
Q Consensus 235 ~~~~a~~~~~~~~ 247 (302)
+...|..+++...
T Consensus 203 n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 203 NISFAHESKDIFL 215 (312)
T ss_dssp BHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7888888777664
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.21 E-value=41 Score=23.18 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHhcCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh
Q 022131 96 QLSLDKLNFMKEKGICP-TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA 149 (302)
Q Consensus 96 ~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 149 (302)
+.+..+|..|...|+-. -...|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 44667777777765432 3445666777777777888888888777777655543
No 289
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=58.89 E-value=45 Score=25.08 Aligned_cols=173 Identities=6% Similarity=0.018 Sum_probs=79.9
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 022131 67 FDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTV---ATYSSVVKCLCSCGRIEDAEELLGEMVRN 143 (302)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 143 (302)
.+.+.+.|..++...-.+.+...+..|+.+-+. .+.+.|..++. .-.+ .+...+..|+.+-+..+++.
T Consensus 47 v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~---- 117 (285)
T 3kea_A 47 VCTLLNAGALKNLLENEFPLHQAATLEDTKIVK----ILLFSGLDDSQFDDKGNT-ALYYAVDSGNMQTVKLFVKK---- 117 (285)
T ss_dssp HHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHH----HHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHH----
T ss_pred HHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHHhc----
Confidence 344444454433322233455566677765444 34445544332 1222 23344556776655444443
Q ss_pred CCCCCh---hhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 022131 144 GVCPSA---ETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220 (302)
Q Consensus 144 ~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (302)
|..++. .-+...+...+..|+.+ +.+.+.+.|....+...-.+.+...+..|+.+-+..+++.-...... +.
T Consensus 118 ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~ 192 (285)
T 3kea_A 118 NWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NS 192 (285)
T ss_dssp CGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT-CC
T ss_pred CCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcc-cC
Confidence 433332 12123333445566654 34444444431222212234445556788888777777664432211 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhh
Q 022131 221 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT 257 (302)
Q Consensus 221 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 257 (302)
.-.+..+...+..|+. ++.+.+.+.|..|+...
T Consensus 193 ~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 193 LLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp CBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred CCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 1112223333455664 34555566777776654
No 290
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=58.79 E-value=32 Score=22.62 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 022131 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEY 159 (302)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (302)
.-.|.++++.+.+.+...+..|...-+..+
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L 63 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQF 63 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 334444444444433333333333333333
No 291
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=58.18 E-value=1e+02 Score=28.39 Aligned_cols=66 Identities=9% Similarity=-0.005 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------------------CHHHHHHHHHHHHHcCCHHHH
Q 022131 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP-----------------------DLDSYTMLIHGLCEKQKWKEA 239 (302)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------------~~~~~~~li~~~~~~g~~~~a 239 (302)
.+...--.+..+|...|++++|.+.|++... |+.. ...-|..++..+-+.+.++.+
T Consensus 838 ~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~v 916 (950)
T 4gq2_M 838 SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDA 916 (950)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHH
Confidence 3433334456667777777777777765432 1110 112456666666666777777
Q ss_pred HHHHHHHHHC
Q 022131 240 CQYFVEMIEK 249 (302)
Q Consensus 240 ~~~~~~~~~~ 249 (302)
.++.+..++.
T Consensus 917 i~fA~lAI~~ 926 (950)
T 4gq2_M 917 LEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 7666666653
No 292
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=58.06 E-value=36 Score=22.93 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 022131 130 IEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRK 163 (302)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 163 (302)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444433333333333333333333
No 293
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=58.04 E-value=66 Score=25.24 Aligned_cols=84 Identities=18% Similarity=0.124 Sum_probs=48.8
Q ss_pred HHhcCCchhHHH----HHHHHHhcCCCcCHHHHHHHHHHHhccCCHH-HHHHHHHHHHH----CC--CCCChhhHHHHHH
Q 022131 89 YSRAHQPQLSLD----KLNFMKEKGICPTVATYSSVVKCLCSCGRIE-DAEELLGEMVR----NG--VCPSAETYNCFFK 157 (302)
Q Consensus 89 ~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~ 157 (302)
+.+.|+...+-+ +++-..+.++++|......++..+.....-+ .=..+.+++.+ .| ..-|+.....+..
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~ 144 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGT 144 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 344455544433 3455556677788887777887777665321 12233333332 22 3345666677777
Q ss_pred HHHccCCchHHHHHH
Q 022131 158 EYRGRKDANGAMKLY 172 (302)
Q Consensus 158 ~~~~~~~~~~a~~~~ 172 (302)
.|.+.+++.+|...|
T Consensus 145 ~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 145 LYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHccCCHHHHHHHH
Confidence 888888877776655
No 294
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=57.85 E-value=29 Score=23.20 Aligned_cols=12 Identities=25% Similarity=0.709 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHC
Q 022131 132 DAEELLGEMVRN 143 (302)
Q Consensus 132 ~a~~~~~~~~~~ 143 (302)
.|.++++.+.+.
T Consensus 35 ta~ei~~~l~~~ 46 (145)
T 3eyy_A 35 TPDDILGEVRKT 46 (145)
T ss_dssp CHHHHHHHHHTT
T ss_pred CHHHHHHHHHhh
Confidence 344444444333
No 295
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=57.18 E-value=71 Score=25.34 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHH
Q 022131 3 TSLIYGWCKINRIDMAERFLGEMI 26 (302)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~ 26 (302)
..+|.-|...|+.++|...++++.
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 457778888888888888887764
No 296
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=56.41 E-value=67 Score=24.82 Aligned_cols=65 Identities=14% Similarity=0.182 Sum_probs=40.8
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 022131 151 TYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNR--MDMVREIWNDVKGSGLG 217 (302)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 217 (302)
....++.-|...|+.++|.+.++++.... -....+...+..+.-+.++ .+.+..++..+.+.|+-
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~--f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPH--FHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGG--GHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCc--chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 34677888999999999999999986321 1122333444444444333 45566777777765543
No 297
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=55.72 E-value=57 Score=23.80 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHhcCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 022131 96 QLSLDKLNFMKEKGICP-TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCP 147 (302)
Q Consensus 96 ~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 147 (302)
+.+..+|..|...|+-. -...|......+...|++.+|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45556666666554322 33345555566666666666666666666554444
No 298
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.05 E-value=41 Score=21.96 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=11.7
Q ss_pred HHHHHHHHccCCchHHHHHHHHH
Q 022131 153 NCFFKEYRGRKDANGAMKLYRQM 175 (302)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~ 175 (302)
..++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34444455555555555555554
No 299
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=54.29 E-value=13 Score=27.77 Aligned_cols=85 Identities=11% Similarity=0.017 Sum_probs=42.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhh--HHHHHHHH
Q 022131 191 LIGMFMALNRMDMVREIWNDVKGSGLGPD---LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT--FETLYRGL 265 (302)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~ 265 (302)
.+...+..|+.+.+..+++. .|..++ ....+.+.. .+..|+.....++++.+.+.|..++... -...+...
T Consensus 151 ~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A 226 (285)
T 1wdy_A 151 ALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 34445566776655554442 133332 222233333 3445665555667777777777665432 12234444
Q ss_pred hhcchHHHHHHHHH
Q 022131 266 IQSDMLRTWRRLKK 279 (302)
Q Consensus 266 ~~~g~~~~a~~~~~ 279 (302)
...|..+-+..+++
T Consensus 227 ~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 227 VEKKHLGLVQRLLE 240 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 56677665555544
No 300
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=53.58 E-value=42 Score=21.85 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccC
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL 50 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 50 (302)
.++..+...+..-.|.++++.+.+.+...+..|....|+.+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 46777777788899999999999887777787877777777775554
No 301
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=53.49 E-value=45 Score=22.83 Aligned_cols=14 Identities=21% Similarity=0.131 Sum_probs=5.5
Q ss_pred CHHHHHHHHHHHHH
Q 022131 129 RIEDAEELLGEMVR 142 (302)
Q Consensus 129 ~~~~a~~~~~~~~~ 142 (302)
..-.|.++++.+.+
T Consensus 47 ~h~sA~eI~~~l~~ 60 (162)
T 4ets_A 47 THYTPESLYMEIKQ 60 (162)
T ss_dssp SCBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 33334444444433
No 302
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=53.37 E-value=12 Score=20.60 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 022131 131 EDAEELLGEMVRNGVCPSAETYNCFFKEY 159 (302)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (302)
++|+..|.+|++..-.++..+|...|+.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45555555555433234455565555555
No 303
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=51.18 E-value=16 Score=25.59 Aligned_cols=61 Identities=15% Similarity=0.032 Sum_probs=28.7
Q ss_pred HHHHhcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCch
Q 022131 193 GMFMALNRMDMVREIWNDV-KGSGLGPDLDSYTMLIHGLCEKQK-WKEACQYFVEMIEKGLLPQK 255 (302)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~p~~ 255 (302)
...+..|+.+.+..+++.- .... ..+..-.+.+..+. ..++ ...-.++++.+.+.|..|+.
T Consensus 111 ~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~-~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 111 IPAAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAV-GLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHH-HSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHH-HhccchhhHHHHHHHHHHCCCCCCc
Confidence 3445667776665555543 1111 12222333343333 3333 33335566666677766654
No 304
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=51.11 E-value=65 Score=23.05 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=9.0
Q ss_pred CCcchHHHHHHHHHhCC
Q 022131 13 NRIDMAERFLGEMIERG 29 (302)
Q Consensus 13 g~~~~a~~~~~~~~~~~ 29 (302)
.+.+.|+-.+.+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44555555555555555
No 305
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=50.94 E-value=56 Score=22.32 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=44.2
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhc--CCCcCHHHHHHHHHHHhccCCH
Q 022131 69 EMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEK--GICPTVATYSSVVKCLCSCGRI 130 (302)
Q Consensus 69 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~ 130 (302)
.+.+.|.+++.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 23 ~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 23 ILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 345567776554 355677777778889999999999887 7667777766667777776654
No 306
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=50.30 E-value=50 Score=21.55 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q 022131 3 TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPD 78 (302)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 78 (302)
+.++.-|...|+.++|...++++...... ...+...+..++-+.+ ....+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~--------~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTG--------ESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCS--------SHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCC--------hHHHHHHHHHHHHHHHCCCcCH
Confidence 46778888888888888888887521111 1122233333333310 1334556667777766654433
No 307
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=50.02 E-value=43 Score=20.67 Aligned_cols=32 Identities=9% Similarity=0.072 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 022131 204 VREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK 235 (302)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 235 (302)
|.++.++....|+.|+..+...++..|...+.
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l 59 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ 59 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 44555555566677777666777766665553
No 308
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=49.35 E-value=27 Score=25.68 Aligned_cols=58 Identities=21% Similarity=0.132 Sum_probs=36.0
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCcCHH-------HHHHHHHHHh--ccCCHHHHHHHHHHHHH
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKGICPTVA-------TYSSVVKCLC--SCGRIEDAEELLGEMVR 142 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 142 (302)
.+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-..
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~ 74 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEK 74 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhccc
Confidence 3445567888888888888777766554422 2234444432 56777777777766543
No 309
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=49.05 E-value=40 Score=22.30 Aligned_cols=47 Identities=9% Similarity=0.126 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccC
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL 50 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 50 (302)
.++..+...+..-.|.++++.+.+.+...+..|...-|..+.+.|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 46677777777889999999999887777888877777777776554
No 310
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.82 E-value=60 Score=21.98 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHH
Q 022131 3 TSLIYGWCKINRIDMAERFLGEMI 26 (302)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~ 26 (302)
+.+|.-|...|+.++|...++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 457777888888888888888774
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=47.94 E-value=60 Score=21.78 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=45.7
Q ss_pred HHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCch
Q 022131 102 LNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDAN 166 (302)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 166 (302)
.+.+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 15 ~~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 15 RMSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 34566778775443 44566677667778889999999988877778888888888888877654
No 312
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=47.58 E-value=34 Score=22.63 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=17.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 022131 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGR 162 (302)
Q Consensus 121 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (302)
+..+...++.-.|.++++.+.+.+...+..|...-+..+...
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~ 61 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADA 61 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 333333333444444444444443333333333333333333
No 313
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=47.12 E-value=75 Score=22.66 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=16.5
Q ss_pred cCCcchHHHHHHHHHhCCCcccHHHHHHHH
Q 022131 12 INRIDMAERFLGEMIERGVEPNVVTYNVLL 41 (302)
Q Consensus 12 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 41 (302)
-.+.+.|+-.+.+|++.|-.|.-..-..++
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi 49 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLA 49 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 356666666666666666544433333333
No 314
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=47.01 E-value=58 Score=21.34 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=41.8
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcC-CchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCH
Q 022131 69 EMRVRGIEPDVTSFSIVLHVYSRAH-QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130 (302)
Q Consensus 69 ~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 130 (302)
.+.+.|.+++..- ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3556777766544 34555666666 6788999999999887777777766666666665543
No 315
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=46.73 E-value=57 Score=21.20 Aligned_cols=44 Identities=9% Similarity=0.146 Sum_probs=23.2
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccC
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 128 (302)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444455566666666666554455555444455555444
No 316
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=46.45 E-value=82 Score=22.88 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 022131 96 QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGV 145 (302)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 145 (302)
+.+..++..+.+.|.--|..--...+....+.+.+ ....+-+++.+.|+
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI 141 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGI 141 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCC
Confidence 33445555555555543333333444433331111 23334445555554
No 317
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=46.22 E-value=63 Score=21.52 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=41.3
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCC
Q 022131 68 DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR 129 (302)
Q Consensus 68 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 129 (302)
+.+.+.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34556777766543 33455555566 77899999999988777777776666666666554
No 318
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=45.52 E-value=1.1e+02 Score=24.00 Aligned_cols=62 Identities=11% Similarity=0.143 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHCCC
Q 022131 83 SIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG-RIEDAEELLGEMVRNGV 145 (302)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~ 145 (302)
..++.-|...|+.++|.+.++++..-... ...+...+..++-+.. ..+.+..++..+.+.|+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 45677777788888887777776422111 1222233333332221 23445556666665544
No 319
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=44.84 E-value=68 Score=21.51 Aligned_cols=62 Identities=15% Similarity=0.159 Sum_probs=43.7
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcC-CchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCH
Q 022131 68 DEMRVRGIEPDVTSFSIVLHVYSRAH-QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130 (302)
Q Consensus 68 ~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 130 (302)
+.+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34566787766554 34555665666 6788999999999887777777766667777766644
No 320
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.83 E-value=74 Score=23.85 Aligned_cols=187 Identities=10% Similarity=-0.020 Sum_probs=84.1
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHc
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA---ETYNCFFKEYRG 161 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 161 (302)
.+...+..|+.+-+..+ .+.|..++...-.+.+...+..|+.+-+..+ .+.|..++. .-++.+.. .+.
T Consensus 34 ~L~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t~L~~-A~~ 104 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTL----LNAGALKNLLENEFPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNTALYY-AVD 104 (285)
T ss_dssp HHHHHHHTTCHHHHHHH----HHTTGGGSCCTTCCHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCCHHHH-HHH
T ss_pred HHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCcHHHH-HHH
Confidence 34445556776554444 4444333322122344455667776654444 445544432 22333333 345
Q ss_pred cCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 022131 162 RKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGP-DLDSYTMLIHGLCEKQKWKEAC 240 (302)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~ 240 (302)
.|+.+-+..+++.-.... ..+...+.+.+...+..|+.+-+..++ +.|..+ +...-...+...+..|+.+-+.
T Consensus 105 ~g~~~~v~~Ll~~ga~~~--~~~~~g~~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~g~t~L~~A~~~g~~~~v~ 178 (285)
T 3kea_A 105 SGNMQTVKLFVKKNWRLM--FYGKTGWKTSFYHAVMLNDVSIVSYFL----SEIPSTFDLAILLSCIHITIKNGHVDMMI 178 (285)
T ss_dssp TTCHHHHHHHHHHCGGGG--GCSSSGGGSHHHHHHHTTCHHHHHHHH----TTSCTTCCCSTHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHhcCCCCC--ccCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCccccccCCccHHHHHHHcChHHHHH
Confidence 666655544444311111 122222234455556677766554444 444333 2212233444556778877666
Q ss_pred HHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccccCCCcccc
Q 022131 241 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSE 291 (302)
Q Consensus 241 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 291 (302)
-+++.-.+-.. .|..-.+..+......|.. ++.+.+.+.|..++..
T Consensus 179 ~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 179 LLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTT
T ss_pred HHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCC
Confidence 66655333221 1111122222223344553 3444555666665544
No 321
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=44.61 E-value=77 Score=22.04 Aligned_cols=170 Identities=7% Similarity=-0.133 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 022131 77 PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFF 156 (302)
Q Consensus 77 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 156 (302)
+|..+-...+..+.+.++.+ +...+..+.. .++...-...+.++.+.++.+. ...+..+.. .++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHH
Confidence 45666666666666666543 3333334433 2466666666677777776543 334444443 26777777778
Q ss_pred HHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 022131 157 KEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKW 236 (302)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 236 (302)
.++...++.+.... +..+.. .++..+-...+.++.+.++.+ +...+..+.. .++..+-...+.++...|..
T Consensus 98 ~aL~~~~~~~~~~~-L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~ 168 (201)
T 3ltj_A 98 VALGQIGDERAVEP-LIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE 168 (201)
T ss_dssp HHHHHHCCGGGHHH-HHHHTT----CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH
T ss_pred HHHHHhCcHHHHHH-HHHHHc----CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch
Confidence 88888877554433 444443 457667777777777777643 4444444444 25777777778888777764
Q ss_pred HHHHHHHHHHHHCCCCCchhhHHHHHHHHhh
Q 022131 237 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 267 (302)
Q Consensus 237 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 267 (302)
++...+..+.+. ++...-...+.++.+
T Consensus 169 -~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 169 -RVRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp -HHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 455555555542 344444444444443
No 322
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=43.90 E-value=76 Score=21.77 Aligned_cols=50 Identities=4% Similarity=-0.027 Sum_probs=24.7
Q ss_pred CCchHHHHHHHHHHhCCCCCC--CHHHHHHHHH------HHHhcCCHHHHHHHHHHHHh
Q 022131 163 KDANGAMKLYRQMKEDGLCVP--NMHSYNILIG------MFMALNRMDMVREIWNDVKG 213 (302)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~ 213 (302)
|++-+|.++++.+-.... .+ ....|..||+ ...+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~-~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYG-RGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTC-SSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555555555555554432 23 2334444444 12245666666666665543
No 323
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=43.74 E-value=81 Score=22.09 Aligned_cols=79 Identities=9% Similarity=-0.001 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCc----------------C-HHHHHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICP----------------T-VATYSS 119 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------------~-~~~~~~ 119 (302)
.|.+.+++-++.... ..+..-|..| +|-+..++..|...++.+....+.. | ...++.
T Consensus 46 ngEY~R~Lf~L~~lN----T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l 119 (242)
T 3kae_A 46 NGEYTRALFHLHKLN----TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESL 119 (242)
T ss_dssp TTCHHHHHHHHHTCC----BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHH
T ss_pred cchHhHHHHHHHhcc----hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHH
Confidence 556666665553321 1122223333 5677889999999999998554431 2 234455
Q ss_pred HHHHHhccCCHHHHHHHHHHHH
Q 022131 120 VVKCLCSCGRIEDAEELLGEMV 141 (302)
Q Consensus 120 ll~~~~~~~~~~~a~~~~~~~~ 141 (302)
+...+.+.|+.++|+..+..--
T Consensus 120 ~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 120 LGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhhhHhhhhc
Confidence 5666666777777776665443
No 324
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=43.56 E-value=70 Score=21.27 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=43.4
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCH
Q 022131 68 DEMRVRGIEPDVTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRI 130 (302)
Q Consensus 68 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 130 (302)
+.+.+.|.+++..- ..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34566787766543 345555666677888999999998887777777766667777666543
No 325
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=43.46 E-value=43 Score=18.84 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 022131 35 VTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA 92 (302)
Q Consensus 35 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 92 (302)
..++.++..+++ ...+++++-.+.+..+.| ..+..+|---.+..++.
T Consensus 3 pl~~Qll~l~Ae----------d~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 3 DGLNQLYNLVAQ----------DYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH----------HHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 346677777777 778888888888888887 34666766666665543
No 326
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=42.57 E-value=77 Score=22.06 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 022131 34 VVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 91 (302)
Q Consensus 34 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (302)
...++.++..++. ..-+++++-.+.+....|. .+..+|---.+.+++
T Consensus 111 ~~l~~Qll~l~Ae----------d~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaR 157 (174)
T 2p22_A 111 TDGLNQLYNLVAQ----------DYALTDTIECLSRMLHRGT-IPLDTFVKQGRELAR 157 (174)
T ss_dssp SHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3445666666666 5566666666666666653 345555544444443
No 327
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=41.63 E-value=1.7e+02 Score=25.26 Aligned_cols=114 Identities=8% Similarity=-0.012 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHH----HHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 022131 129 RIEDAEELLGEMVRNGVCPSAETYNCF----FKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMV 204 (302)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (302)
+.+.|...+....+... .+......+ .......+...++...+...... .++.......+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 66777777777754322 233222222 22223334244555556554443 34444455555555667888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022131 205 REIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMI 247 (302)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 247 (302)
...|..|..... ......-.+..++...|+.++|..+|..+-
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888877765311 123334445566667788888887777654
No 328
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=41.50 E-value=1.1e+02 Score=23.08 Aligned_cols=114 Identities=17% Similarity=0.117 Sum_probs=74.2
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHH----HHHHHHHHHHh
Q 022131 122 KCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMH----SYNILIGMFMA 197 (302)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 197 (302)
....+.|++++++.....-++..+ -|...-..+++.+|-.|++++|.+-++...+. .|+.. .|..+|.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~---- 76 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVK---- 76 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHH----
Confidence 345677888888888887777644 57888888889999999999998888877776 34432 2333332
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHC
Q 022131 198 LNRMDMVREIWNDVKGSGLGP-----DLDSYTMLIHGLC--EKQKWKEACQYFVEMIEK 249 (302)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~ 249 (302)
|+..-.++...+-.| ...-...++.+.. ..|+.++|.++-..+.+.
T Consensus 77 ------aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 77 ------AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 222223333332222 2334455666553 469999999998888654
No 329
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=41.50 E-value=50 Score=23.54 Aligned_cols=12 Identities=0% Similarity=-0.020 Sum_probs=4.7
Q ss_pred hcCCchhHHHHH
Q 022131 91 RAHQPQLSLDKL 102 (302)
Q Consensus 91 ~~~~~~~a~~~~ 102 (302)
+.|+.+....++
T Consensus 15 ~~g~~~~v~~ll 26 (231)
T 3aji_A 15 YSGKLDELKERI 26 (231)
T ss_dssp HHTCHHHHHHHH
T ss_pred HhCCHHHHHHHH
Confidence 344444333333
No 330
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=41.06 E-value=60 Score=22.33 Aligned_cols=65 Identities=8% Similarity=0.124 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCch
Q 022131 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK--WKEACQYFVEMIEKGLLPQK 255 (302)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~ 255 (302)
...++.-|...++.++|...++++..... .......+|......++ -+.+..++..+.. ++-+..
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~--~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~ 79 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTT 79 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSGG--GGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHH
Confidence 45677778888888888888888763211 12222333333333332 2345556666533 443333
No 331
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=40.70 E-value=1e+02 Score=22.28 Aligned_cols=59 Identities=7% Similarity=0.011 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCc-----hhHHHHHHHHHhcCCCcCHH
Q 022131 57 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHQP-----QLSLDKLNFMKEKGICPTVA 115 (302)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~ 115 (302)
..+.+.|+-++-+|.+.|-.|....-..++-+.-..|.- ..|...++.....|.+--..
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i 111 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLF 111 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 455677777777777777777777777777776665543 23455556666666543333
No 332
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=40.66 E-value=1.8e+02 Score=25.17 Aligned_cols=116 Identities=9% Similarity=-0.022 Sum_probs=72.8
Q ss_pred CCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 022131 163 KDANGAMKLYRQMKEDGLCVPNMHSYNILIGMF----MALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKE 238 (302)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 238 (302)
.+.+.|...+....+.. ..+......+-... ...+...++...+...... .++.......+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ--QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc--CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHH
Confidence 37788888888887654 23433333332222 2334244566666655443 3455455556666678899999
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHHhccc
Q 022131 239 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 239 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
|...|..|..... ....-.--+.+++...|+.++|..+++.+.+
T Consensus 304 a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999998854311 1233233456788889999999999988765
No 333
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.48 E-value=87 Score=21.48 Aligned_cols=50 Identities=8% Similarity=-0.124 Sum_probs=28.4
Q ss_pred CCchhHHHHHHHHHhcCCCc--CHHHHHHHHH-H-----HhccCCHHHHHHHHHHHHH
Q 022131 93 HQPQLSLDKLNFMKEKGICP--TVATYSSVVK-C-----LCSCGRIEDAEELLGEMVR 142 (302)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 142 (302)
|++=+|.++++..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666777776665543333 3445555555 2 2245666666666666544
No 334
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.34 E-value=56 Score=18.93 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=26.2
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcC-CchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccC
Q 022131 70 MRVRGIEPDVTSFSIVLHVYSRAH-QPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128 (302)
Q Consensus 70 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 128 (302)
+.+.|+..+..- ..++..+...+ ..-.+.++.+.+.+.+...+..|....+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334454444333 23334443333 34455555555555544444444444444444433
No 335
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=39.18 E-value=98 Score=21.69 Aligned_cols=167 Identities=10% Similarity=-0.076 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHH
Q 022131 96 QLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQM 175 (302)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (302)
.++...+....+ .++...-...+..+.+.+..+ +...+..+... ++...-...+.++...++.+.. ..+..+
T Consensus 18 ~~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~-~~L~~~ 89 (211)
T 3ltm_A 18 PEKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDERAV-EPLIKA 89 (211)
T ss_dssp GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGGH-HHHHHH
T ss_pred HhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHHH-HHHHHH
Confidence 344444444443 246666666677777777643 34444444432 5777777777888887765444 444444
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCch
Q 022131 176 KEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK 255 (302)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 255 (302)
.. .++..+-...+.+..+.++.+. ...+..+.+ .++...-...+.++...|+.+ +...+..+.+ .++.
T Consensus 90 l~----~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~ 157 (211)
T 3ltm_A 90 LK----DEDGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDG 157 (211)
T ss_dssp TT----CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSH
T ss_pred Hc----CCCHHHHHHHHHHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCH
Confidence 43 4677777788888888887544 444444543 367777777888888887743 4455555543 3566
Q ss_pred hhHHHHHHHHhhcchHHHHHHHHHhccc
Q 022131 256 VTFETLYRGLIQSDMLRTWRRLKKKLDE 283 (302)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (302)
.+-...+.++.+.+.. ++...+..+.+
T Consensus 158 ~vr~~a~~aL~~~~~~-~~~~~L~~~l~ 184 (211)
T 3ltm_A 158 WVRQSAADALGEIGGE-RVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHHHHCSH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHh
Confidence 6667777777777763 44444444433
No 336
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=38.85 E-value=99 Score=21.68 Aligned_cols=23 Identities=9% Similarity=-0.338 Sum_probs=14.8
Q ss_pred HHHHHHHHhhcchHHHHHHHHHh
Q 022131 258 FETLYRGLIQSDMLRTWRRLKKK 280 (302)
Q Consensus 258 ~~~l~~~~~~~g~~~~a~~~~~~ 280 (302)
++.+...|.+.|+.++|+..+..
T Consensus 117 y~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 117 ESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHhhhHhhh
Confidence 34445566677777777776654
No 337
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=38.35 E-value=2.3e+02 Score=25.85 Aligned_cols=24 Identities=0% Similarity=-0.205 Sum_probs=10.5
Q ss_pred HHHHHHHHccCCchHHHHHHHHHH
Q 022131 153 NCFFKEYRGRKDANGAMKLYRQMK 176 (302)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~ 176 (302)
..++.+++...+.+...+++....
T Consensus 762 ~~ll~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 762 DKLRSALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHh
Confidence 334444444444444444444433
No 338
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.22 E-value=21 Score=25.64 Aligned_cols=147 Identities=9% Similarity=0.051 Sum_probs=63.3
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCcCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHH
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKGICPTV---ATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSA---ETYNCFFKE 158 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~ 158 (302)
.+...+..|+.+ +++.+.+.|..++. ...+ .+...+..|+.+ +++.+.+.|..++. .-.+.+..+
T Consensus 79 ~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a 149 (240)
T 3eu9_A 79 PLHWATRQGHLS----MVVQLMKYGADPSLIDGEGCS-CIHLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWA 149 (240)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred hhHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCC-HHHHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHH
Confidence 344445566654 34444555544332 1122 333445556655 34444455543332 222334433
Q ss_pred HHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCH
Q 022131 159 YRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSY--TMLIHGLCEKQKW 236 (302)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~ 236 (302)
.. .+......+++.+....-. ..+...-.+.+...+..|+.+-+..+++. |..++.... ..-+....+.|+.
T Consensus 150 ~~-~~~~~~~~~~L~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~l~~A~~~~~~ 223 (240)
T 3eu9_A 150 AY-RTHSVDPTRLLLTFNVSVN-LGDKYHKNTALHWAVLAGNTTVISLLLEA----GANVDAQNIKGESALDLAKQRKNV 223 (240)
T ss_dssp HH-HCCSSTTHHHHHHTTCCTT-CCCTTTCCCHHHHHHHHTCHHHHHHHHHH----TCCTTCBCTTSCBHHHHHHHTTCH
T ss_pred HH-hCChHHHHHHHHhcCCCcc-hhhccCCCcHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCcH
Confidence 33 3333334444333221110 11110112334555677777765555543 444432211 1234444667777
Q ss_pred HHHHHHHHHH
Q 022131 237 KEACQYFVEM 246 (302)
Q Consensus 237 ~~a~~~~~~~ 246 (302)
+-+..+++..
T Consensus 224 ~~v~~L~~~~ 233 (240)
T 3eu9_A 224 WMINHLQEAR 233 (240)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 6655555443
No 339
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=37.42 E-value=68 Score=23.38 Aligned_cols=57 Identities=14% Similarity=0.003 Sum_probs=34.7
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCcCH-------HHHHHHHHHHhcc---CCHHHHHHHHHHHHH
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKGICPTV-------ATYSSVVKCLCSC---GRIEDAEELLGEMVR 142 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~ 142 (302)
.+...++.|+.+.+..+++.+.+.|..++. .-.+.|..+ +.. |+.+-+..+++.-..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCc
Confidence 345566788888888888877777654432 223344333 333 777777777666544
No 340
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=36.19 E-value=1.2e+02 Score=21.98 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=10.6
Q ss_pred HHHccCCchHHHHHHHHHHhC
Q 022131 158 EYRGRKDANGAMKLYRQMKED 178 (302)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~ 178 (302)
.|.+.|.+++|.+++++....
T Consensus 123 VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHhcchHHHHHHHHHHhcC
Confidence 444555555555555555443
No 341
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=34.66 E-value=1.9e+02 Score=23.71 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHh
Q 022131 77 PDVTSFSIVLHVYSRAHQPQLSLDKLNFMKE 107 (302)
Q Consensus 77 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 107 (302)
.+......++.. ..|+...+..+++.+..
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 344555555544 35666666666665543
No 342
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=34.62 E-value=1.1e+02 Score=21.36 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchH
Q 022131 220 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 271 (302)
Q Consensus 220 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 271 (302)
...++.++..++...-.+.++-.+.++.+.|. .+..+|..-++.+++..-+
T Consensus 111 ~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaReQF~ 161 (174)
T 2p22_A 111 TDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQQFL 161 (174)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHH
Confidence 34456666666665556666666666665553 4455555555555544433
No 343
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=34.58 E-value=1.1e+02 Score=20.98 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHH
Q 022131 3 TSLIYGWCKINRIDMAERFLGEMI 26 (302)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~ 26 (302)
..+|.-|...|+.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 457788888888888888888875
No 344
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=34.02 E-value=1.8e+02 Score=23.15 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 022131 3 TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPSERFEKTIRNAEKVFDEMRVRGIEPDVTSF 82 (302)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (302)
..+|.-|...|+.++|...++++..-+.--....+..+..++-+. ...-+.+-.++..+...++-+.....
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~---------~~~re~~~~LL~~L~~~~~ls~~~~~ 86 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRS---------DEDKEKASSLISLLKQEGIATSDNFM 86 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSC---------HHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCC---------hHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 468899999999999999999985311000122333333333332 34446677777777776655444444
Q ss_pred HHHHHHH
Q 022131 83 SIVLHVY 89 (302)
Q Consensus 83 ~~ll~~~ 89 (302)
..+...+
T Consensus 87 ~Gf~~ll 93 (364)
T 3l6a_A 87 QAFLNVL 93 (364)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 345
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=33.08 E-value=1.2e+02 Score=21.02 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=8.6
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHH
Q 022131 225 MLIHGLCEKQ-KWKEACQYFVEM 246 (302)
Q Consensus 225 ~li~~~~~~g-~~~~a~~~~~~~ 246 (302)
.++..+.+.| .++.+..+++.+
T Consensus 141 K~~~~L~rrGF~~~~I~~vl~~l 163 (177)
T 3e3v_A 141 KIKQSLLTKGFSYDIIDTIIQEL 163 (177)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHC
Confidence 3333333333 333334444433
No 346
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.05 E-value=1.2e+02 Score=20.57 Aligned_cols=48 Identities=15% Similarity=0.296 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCC
Q 022131 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180 (302)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 180 (302)
+.+..+++.+.+.|.-.|...-...+....+.| .....+-.++...|+
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI 94 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGI 94 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCC
Confidence 444555566666665444444444444444433 234455566666654
No 347
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.44 E-value=69 Score=22.09 Aligned_cols=93 Identities=10% Similarity=-0.023 Sum_probs=40.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC---chhhHHHHHHHHhhc
Q 022131 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG-LLP---QKVTFETLYRGLIQS 268 (302)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p---~~~~~~~l~~~~~~~ 268 (302)
...+..|+.+-+..+++.-...-...+....+. +...+..|+.+-+..+++ .| ..+ |..-.+.+..++...
T Consensus 77 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~ 151 (201)
T 3hra_A 77 LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNA-LIPAAEKGHIDNVKLLLE----DGREDIDFQNDFGYTALIEAVGLR 151 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCS-HHHHHHTTCHHHHHHHHH----HCCCCTTCCCTTSCCHHHHHHHSS
T ss_pred HHHHHcCCHHHHHHHHhccCcccccccCCCCcH-HHHHHHcCCHHHHHHHHH----cCCCCcCCCCCCCCCHHHHHHHhc
Confidence 344556777666665543211000111111122 333456677655444443 33 222 233334444444333
Q ss_pred chHHHHHHHHHhccccCCCccc
Q 022131 269 DMLRTWRRLKKKLDEESITFGS 290 (302)
Q Consensus 269 g~~~~a~~~~~~~~~~~~~~~~ 290 (302)
.....-.++.+.+.+.|..++.
T Consensus 152 ~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 152 EGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp CCSHHHHHHHHHHHHTTCCTTC
T ss_pred cchhhHHHHHHHHHHCCCCCCc
Confidence 2233335556666666666553
No 348
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.90 E-value=1.5e+02 Score=21.27 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=20.9
Q ss_pred hcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccC
Q 022131 91 RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCG 128 (302)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 128 (302)
+..|++.|+-.+.+|.+.| .|.-..-..++-+.-..|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4566777777777777777 544444444444444333
No 349
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=29.77 E-value=2.3e+02 Score=23.20 Aligned_cols=55 Identities=11% Similarity=-0.043 Sum_probs=28.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHCCC
Q 022131 197 ALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQK-----WKEACQYFVEMIEKGL 251 (302)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~ 251 (302)
+.++.+.|...+..|.+.|..|....-..++.+.-.-|. ...|...++-...-|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 446777777777777777665554444444444433332 2334444444444443
No 350
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=29.72 E-value=2.2e+02 Score=22.96 Aligned_cols=155 Identities=9% Similarity=0.072 Sum_probs=75.9
Q ss_pred HHHHHHHhccCC---HHHHHHHHHHHHHCC----CCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHH
Q 022131 118 SSVVKCLCSCGR---IEDAEELLGEMVRNG----VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190 (302)
Q Consensus 118 ~~ll~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 190 (302)
..++...|..|+ .++|.+.|+.....+ ++|+... .+...-.+ ..++-..+++..... .+..--..
T Consensus 201 ~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~--~Vy~~~~~--~~~~~~~l~~~y~~s----~~~~ek~~ 272 (419)
T 3rjo_A 201 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL--AVFAVGAQ--STEGWDFLYSKYQFS----LSSTEKSQ 272 (419)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHH--HHHHHHTT--SHHHHHHHHHHHHHC----CCHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcce--eEEeeeeC--CHHHHHHHHHHHhcC----CCHHHHHH
Confidence 455566666665 456777777766542 3344322 11111112 233333444444443 34444567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHH----HHHCCCCCchhhHHHHHHHH
Q 022131 191 LIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEK-QKWKEACQYFVE----MIEKGLLPQKVTFETLYRGL 265 (302)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~----~~~~~~~p~~~~~~~l~~~~ 265 (302)
++.+++...+.....++++......+-....... ++.+...+ --.+.|.+.+.+ +.+. +.++...+..++.+.
T Consensus 273 ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~-~~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~i~~~ 350 (419)
T 3rjo_A 273 IEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQ-ILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMVMGT 350 (419)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHH-HHHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHT
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHH-HHHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHHHHHH
Confidence 7777777777777777777776543212222222 33333322 223445554432 3222 233445566666554
Q ss_pred hh----cchHHHHHHHHHhcc
Q 022131 266 IQ----SDMLRTWRRLKKKLD 282 (302)
Q Consensus 266 ~~----~g~~~~a~~~~~~~~ 282 (302)
.. ..+.++..++++.-.
T Consensus 351 ~~~~~t~~~l~e~~~Ff~~~~ 371 (419)
T 3rjo_A 351 TNQFSTRTRLEEVKGFFSSLK 371 (419)
T ss_dssp TTTCCSHHHHHHHHHHHHTTT
T ss_pred hhcCCCHHHHHHHHHHHHhCc
Confidence 43 345556666665443
No 351
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=29.59 E-value=3.2e+02 Score=26.38 Aligned_cols=77 Identities=8% Similarity=-0.057 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 022131 166 NGAMKLYRQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVE 245 (302)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 245 (302)
+...+.|.++.+--- .-|.......+....+.+++..|.+++.++.+. +|+...|..++..+...|- +....+.++
T Consensus 1266 ~~~~~~~~el~k~~d-~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~w-~h~~~~~~~ 1341 (1354)
T 3lxu_X 1266 AEINELYTEIIKFVD-ANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALGH-EHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHTTSSC-TTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHSC-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc-cCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcCC-HHHHHHHHh
Confidence 344555555554421 223333333333334567777777777777764 3677777777776655553 333344444
Q ss_pred H
Q 022131 246 M 246 (302)
Q Consensus 246 ~ 246 (302)
+
T Consensus 1342 ~ 1342 (1354)
T 3lxu_X 1342 M 1342 (1354)
T ss_dssp H
T ss_pred h
Confidence 3
No 352
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=29.58 E-value=66 Score=17.61 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=15.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCC
Q 022131 233 KQKWKEACQYFVEMIEKGLLP 253 (302)
Q Consensus 233 ~g~~~~a~~~~~~~~~~~~~p 253 (302)
.-|++.|...|.++...|-.|
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP 53 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIP 53 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSC
T ss_pred CCCHHHHHHHHHHHHHcCCCC
Confidence 348888999998887654333
No 353
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.42 E-value=58 Score=17.46 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=9.6
Q ss_pred HHHhhcch--HHHHHHHHHhc
Q 022131 263 RGLIQSDM--LRTWRRLKKKL 281 (302)
Q Consensus 263 ~~~~~~g~--~~~a~~~~~~~ 281 (302)
.++...|. ++.|.+++.+|
T Consensus 28 ~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 28 RALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHh
Confidence 34444444 55555555554
No 354
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=29.26 E-value=49 Score=21.43 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=20.8
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCCHHH
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGRIED 132 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 132 (302)
.|...+.+++.+-|.++++...+.| +...|.+.+-.|...=+++-
T Consensus 38 AietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDv 82 (125)
T 3qil_A 38 AMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDV 82 (125)
T ss_dssp HHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHH
Confidence 3344444555555555555555443 34444444444444433333
No 355
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=28.58 E-value=93 Score=18.25 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=18.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 022131 225 MLIHGLCEKQKWKEACQYFVEMIE 248 (302)
Q Consensus 225 ~li~~~~~~g~~~~a~~~~~~~~~ 248 (302)
.+.+-|+..|+++.|..+|+-..+
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHH
Confidence 355667778888888888887765
No 356
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.36 E-value=2.7e+02 Score=23.50 Aligned_cols=65 Identities=12% Similarity=0.089 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCC-CcCH--HHHH-HHHHHHhccCCHHHHHHHHHHHHHC
Q 022131 79 VTSFSIVLHVYSRAHQPQLSLDKLNFMKEKGI-CPTV--ATYS-SVVKCLCSCGRIEDAEELLGEMVRN 143 (302)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~ 143 (302)
...+|.+++.|...+.++.|..+..+..--.. .++. ..|. .+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56789999999999999999999998742100 1111 1222 3455667788999999998888765
No 357
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=28.30 E-value=2.7e+02 Score=23.51 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 022131 184 NMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDL 220 (302)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (302)
+......|-+.|.+.+++-.|-+++..+...+..++.
T Consensus 216 ~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~~i~L 252 (525)
T 3i5p_A 216 SLKISNILWVYYSRRSKFFESAEILYRLATSNFDITL 252 (525)
T ss_dssp --CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSSCCCH
T ss_pred chhHHHHHHHHHHHcccHHHHHHHHHHHHhCCCCCCH
Confidence 4445567788899999999999999888877554443
No 358
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.92 E-value=1.7e+02 Score=20.94 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=18.6
Q ss_pred hcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q 022131 91 RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCL 124 (302)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 124 (302)
+..|++.|+-.+.+|++.|-.|.-..-..++-+.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3456666666677776666554433333333333
No 359
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=27.59 E-value=1.6e+02 Score=24.24 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCcC--------HHHHH-HHHHHHhccCCHHHHHHHHHHHHHC
Q 022131 81 SFSIVLHVYSRAHQPQLSLDKLNFMKEKGICPT--------VATYS-SVVKCLCSCGRIEDAEELLGEMVRN 143 (302)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~ 143 (302)
..|.+.+.|.+.++.+.+..++..+...+..|+ ..+|. -+...+...+++.+|.+.+....+.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 567888999999999999999999987765222 33444 3445667788999999888776654
No 360
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=27.08 E-value=1.2e+02 Score=18.82 Aligned_cols=31 Identities=10% Similarity=0.273 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 022131 63 AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH 93 (302)
Q Consensus 63 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 93 (302)
+.++.++....|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4445555555566666666666666555544
No 361
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=26.75 E-value=82 Score=20.57 Aligned_cols=13 Identities=15% Similarity=0.046 Sum_probs=6.0
Q ss_pred hhcchHHHHHHHH
Q 022131 266 IQSDMLRTWRRLK 278 (302)
Q Consensus 266 ~~~g~~~~a~~~~ 278 (302)
...|+.+-+.-++
T Consensus 141 ~~~~~~~~v~~Ll 153 (156)
T 1bd8_A 141 LQRGAQDLVDILQ 153 (156)
T ss_dssp HHSCCHHHHHHHH
T ss_pred HHcCcHHHHHHHH
Confidence 3445554444443
No 362
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=26.72 E-value=93 Score=22.93 Aligned_cols=57 Identities=12% Similarity=0.029 Sum_probs=35.5
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCc-------CHHHHHHHHHHHh--ccCCHHHHHHHHHHHH
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKGICP-------TVATYSSVVKCLC--SCGRIEDAEELLGEMV 141 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~ 141 (302)
.+...++.|+.+.+..+++...+.+... +..-.+.|..++. +.|+.+-+..+++.-.
T Consensus 16 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga 81 (273)
T 2pnn_A 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR 81 (273)
T ss_dssp HHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence 4445567889998888888777665332 2233445555543 3577777777777643
No 363
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=26.18 E-value=1.8e+02 Score=20.64 Aligned_cols=123 Identities=12% Similarity=0.031 Sum_probs=62.1
Q ss_pred HHHHHccCCchHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHH
Q 022131 156 FKEYRGRKDANGAMKLYRQMKEDGLCVPN---MHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLD---SYTMLIHG 229 (302)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~ 229 (302)
+...+..|+.+.+..+++.+.+.+. .++ ....+ .+...+..|+.+-+..+ .+.|..++.. ..+ .+..
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~~~~g~t-~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t-~l~~ 85 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGR-ELDIYNNLRQT-PLHLAVITTLPSVVRLL----VTAGASPMALDRHGQT-AAHL 85 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTC-CSCCCCTTSCC-HHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCC-HHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-CCCcccccCCC-HHHHHHHcCCHHHHHHH----HHcCCCccccCCCCCC-HHHH
Confidence 3444677888888888777666653 333 22223 34455667777544444 4455554432 223 3344
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC---chhhHHHHHHHHhhcchHHHHHHHHHhccccCCCccc
Q 022131 230 LCEKQKWKEACQYFVEMIEKGLLP---QKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGS 290 (302)
Q Consensus 230 ~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 290 (302)
.+..|+.+-+..+++.....++.+ +..-.+.+. ..+..|..+-+.. +.+.|..++.
T Consensus 86 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~----Ll~~g~~~~~ 144 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH-VAVNTECQETVQL----LLERGADIDA 144 (241)
T ss_dssp HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHH-HHHHHTCHHHHHH----HHHTTCCTTC
T ss_pred HHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHH-HHHHcCCHHHHHH----HHHcCCCccc
Confidence 456777765555544432211222 233344444 4445566544444 4445555443
No 364
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=25.93 E-value=1.7e+02 Score=20.31 Aligned_cols=12 Identities=8% Similarity=0.196 Sum_probs=4.7
Q ss_pred HHHHHHHhcCCC
Q 022131 100 DKLNFMKEKGIC 111 (302)
Q Consensus 100 ~~~~~~~~~~~~ 111 (302)
.++..+.+.|.-
T Consensus 54 ~vl~~L~~~g~l 65 (177)
T 3e3v_A 54 EIINKLIDLDLI 65 (177)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHHcCCC
Confidence 334444444433
No 365
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=25.79 E-value=2.6e+02 Score=22.52 Aligned_cols=26 Identities=4% Similarity=-0.175 Sum_probs=11.7
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHh
Q 022131 152 YNCFFKEYRGRKDANGAMKLYRQMKE 177 (302)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (302)
-..++.+++...+.+...++++....
T Consensus 270 k~~ll~aL~~s~d~~ll~~~L~~~l~ 295 (419)
T 3rjo_A 270 KSQIEFALCRTQNKEKLQWLLDESFK 295 (419)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhC
Confidence 34444444444444444444444443
No 366
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=25.18 E-value=1.6e+02 Score=21.22 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=49.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHc--cCCchHHHHHHHHHHhCCCCC---------
Q 022131 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSA-------ETYNCFFKEYRG--RKDANGAMKLYRQMKEDGLCV--------- 182 (302)
Q Consensus 121 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~--------- 182 (302)
+...++.|+.+.+..+++.+.+.|..++. .-.+.|..+... .|+.+-+..+++.-...+...
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence 44456778888888888887777654433 334455444432 377777777776554432100
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022131 183 PNMHSYNILIGMFMALNRMDMVREIWND 210 (302)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (302)
.|....+. +...+..|+.+-+..+++.
T Consensus 86 ~d~~g~t~-L~~A~~~g~~~~v~~Ll~~ 112 (256)
T 2etb_A 86 EFYQGHSA-LHIAIEKRSLQCVKLLVEN 112 (256)
T ss_dssp TTTTTCCH-HHHHHHTTCHHHHHHHHHT
T ss_pred ccccCCCH-HHHHHHcCCHHHHHHHHHc
Confidence 11122233 3444567777665555543
No 367
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=25.11 E-value=3.5e+02 Score=23.70 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHh
Q 022131 4 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR 46 (302)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 46 (302)
++|-.|.++|++++|.++.++.... +.--...|...+..|+.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 4678889999999999999776533 11122456667777764
No 368
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=24.93 E-value=86 Score=16.63 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=16.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 022131 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYF 243 (302)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 243 (302)
+.+..|...|+.-...-...++. .+.|++..|++++
T Consensus 12 ~al~qMl~MGF~negGWLt~LL~--~k~gDI~~aLD~l 47 (52)
T 1q02_A 12 ESLSQMLSMGFSDEGGWLTRLLQ--TKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHTTTCCCTTSHHHHHHH--HTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCccccHHHHHHH--HccCCHHHHHHHh
Confidence 34445555555433333333433 2455555555544
No 369
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.81 E-value=1.8e+02 Score=20.53 Aligned_cols=84 Identities=12% Similarity=0.128 Sum_probs=46.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---------chhhHHH
Q 022131 192 IGMFMALNRMDMVREIWNDVKGSGLGPDLDS--YTMLIHGLCEKQKWKEACQYFVEMIEKGLLP---------QKVTFET 260 (302)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---------~~~~~~~ 260 (302)
+...+..|+.+-+..++ +.|..++... -..-+...+..|+.+-+..+++.+.+.|..+ |..-.+.
T Consensus 125 L~~A~~~~~~~~v~~Ll----~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp 200 (232)
T 2rfa_A 125 LSFAACVGSEEIVRLLI----EHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP 200 (232)
T ss_dssp HHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH
T ss_pred HHHHHHcCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH
Confidence 34445566765554444 4444443211 1123444567788888888888888876543 2333333
Q ss_pred HHHHHhhcchHHHHHHHHHh
Q 022131 261 LYRGLIQSDMLRTWRRLKKK 280 (302)
Q Consensus 261 l~~~~~~~g~~~~a~~~~~~ 280 (302)
+......|..+-+..++++
T Consensus 201 -l~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 201 -FKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp -HHHHHHHTCHHHHHHHHHH
T ss_pred -HHHHHHcCCHHHHHHHHhc
Confidence 3444566776666555554
No 370
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=24.38 E-value=4.7e+02 Score=25.33 Aligned_cols=79 Identities=11% Similarity=0.160 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHHHHHHHHH
Q 022131 201 MDMVREIWNDVKGSGLGP-DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKK 279 (302)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 279 (302)
.+...+.|.++.+. +.+ |.......+.--...+++..|++++.++.+. +|+...|..++..+...| |+....+.+
T Consensus 1265 ~~~~~~~~~el~k~-~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~-w~h~~~~~~ 1340 (1354)
T 3lxu_X 1265 LAEINELYTEIIKF-VDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALG-HEHIRTVIN 1340 (1354)
T ss_dssp HHHHHHHHHHHTTS-SCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-cccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 45566777777775 222 3333333333334789999999999999875 478888888887776555 455555555
Q ss_pred hccc
Q 022131 280 KLDE 283 (302)
Q Consensus 280 ~~~~ 283 (302)
++.-
T Consensus 1341 ~~~~ 1344 (1354)
T 3lxu_X 1341 RMMI 1344 (1354)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 5543
No 371
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=23.80 E-value=1.1e+02 Score=23.81 Aligned_cols=41 Identities=15% Similarity=0.380 Sum_probs=19.6
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022131 173 RQMKEDGLCVPNMHSYNILIGMFMALNRMDMVREIWNDVKGS 214 (302)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (302)
..+.+.++ .|...++..++..+.+.=.++.+.++|+.+...
T Consensus 217 ~hL~~~~i-~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e 257 (334)
T 2qq8_A 217 AHFKKNNL-TPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD 257 (334)
T ss_dssp HHHHHTTC-CGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-CccchHHHHHHHHhcccCCHHHHHHHHHHHHHc
Confidence 33344443 444444445555454444455555555554443
No 372
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=23.57 E-value=1.3e+02 Score=22.66 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022131 199 NRMDMVREIWNDVKGS-GLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246 (302)
Q Consensus 199 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 246 (302)
.++.....++..|... .-.|+......++++|.+.-+-.+|.+.++..
T Consensus 187 eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~ 235 (268)
T 2fv2_A 187 ERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 235 (268)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 3444444444444431 23456666666666666666666666665543
No 373
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=23.57 E-value=2.1e+02 Score=21.75 Aligned_cols=84 Identities=12% Similarity=0.008 Sum_probs=44.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhc
Q 022131 192 IGMFMALNRMDMVREIWNDVKGSGLGPD---LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 268 (302)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 268 (302)
+...+..|..+.+..++.. .|..++ ..-.+.|.. .+..|+.+ +.+.+++.|..+|..+ . +....+.
T Consensus 243 L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~-A~~~g~~~----iv~~Ll~~GAd~n~~~--~-L~~A~~~ 311 (337)
T 4g8k_A 243 LILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLL-AVELKLKK----IAELLCKRGASTDCGD--L-VMTARRN 311 (337)
T ss_dssp HHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHH-HHHTTCHH----HHHHHHTTSCSSTTCC--H-HHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHH-HHHcCCHH----HHHHHHHCCCCCCCCC--H-HHHHHHc
Confidence 4455677887766655432 233222 222223333 34567654 4455567788787765 2 3334556
Q ss_pred chHHHHHHHHHhccccCCCccc
Q 022131 269 DMLRTWRRLKKKLDEESITFGS 290 (302)
Q Consensus 269 g~~~~a~~~~~~~~~~~~~~~~ 290 (302)
|+.+ +.+.+.+.|-.++.
T Consensus 312 ~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 312 YDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp TCHH----HHHHHHHTTCCC--
T ss_pred CCHH----HHHHHHHCcCCCCC
Confidence 6654 45556667766654
No 374
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.49 E-value=1.2e+02 Score=23.54 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=15.1
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCC
Q 022131 85 VLHVYSRAHQPQLSLDKLNFMKEKGIC 111 (302)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~~~~ 111 (302)
.+...+..|+.+-+..+++.....|..
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQM 113 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCC
Confidence 344445667766666666655444443
No 375
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.36 E-value=3.2e+02 Score=22.72 Aligned_cols=128 Identities=9% Similarity=0.123 Sum_probs=64.5
Q ss_pred cCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHH
Q 022131 108 KGICPTVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHS 187 (302)
Q Consensus 108 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 187 (302)
.|++--...|..-.+.+...|++++|-++--...+ |+--+..|.+.+-.+=..-|+..-.+.+|..+.+.| +.+..-
T Consensus 355 ~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g--~Ln~~E 431 (494)
T 1bpo_A 355 NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG--QLNKYE 431 (494)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS--CCCHHH
T ss_pred cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC--ccchHH
Confidence 34444444455555666666777777665544332 233455555554444444555666666666666666 455444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022131 188 YNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEM 246 (302)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 246 (302)
-.-+++.-...|+.+-....+.+ ..+..+...=..+ +..+...|+.+|.+.
T Consensus 432 SlEl~r~vL~q~r~~llekWl~e---~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 432 SLELCRPVLQQGRKQLLEKWLKE---DKLECSEELGDLV-----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHHHHHHH-----HHHCSHHHHHHHHHH
T ss_pred hhHHhHHHHhccHHHHHHHHHhc---CCccccHHhHhhh-----hhcCHHHHHHHHHHc
Confidence 44445555555555444443332 2233443332222 333455555555544
No 376
>1dvk_A PRP18; PRE-mRNA splicing factor, X-RAY crystallography, RNA binding protein; 2.15A {Saccharomyces cerevisiae} SCOP: a.72.1.1
Probab=22.91 E-value=1.9e+02 Score=20.02 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=18.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q 022131 206 EIWNDVKGSGLGPDLDSYTMLIHGLCEK-QKWKEACQYFVEM 246 (302)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~ 246 (302)
-+|..+.+..++.+...--.-|--++.. +++-+|.+.|-+|
T Consensus 67 PL~~~Lr~~~L~~dil~~L~~Iv~~~q~~r~y~~And~Yl~L 108 (173)
T 1dvk_A 67 PLLLQLRRNQLAPDLLISLATVLYHLQQPKEINLAVQSYMKL 108 (173)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTSGGGHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3445555544433332222222223344 5566666655555
No 377
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=22.61 E-value=4.5e+02 Score=24.06 Aligned_cols=158 Identities=11% Similarity=0.137 Sum_probs=87.9
Q ss_pred HHHHHHHhccCC---HHHHHHHHHHHHHCC----CCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHH
Q 022131 118 SSVVKCLCSCGR---IEDAEELLGEMVRNG----VCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNI 190 (302)
Q Consensus 118 ~~ll~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 190 (302)
..++...|+.|. .+.|.+.|+.....+ ++|+.. ..+...-.+.|..++-..+++...... +..--..
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~----~~~ek~~ 763 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ----LVNEADK 763 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC----SHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC----CHHHHHH
Confidence 346666777776 456788888876542 444433 333333456677777667777776653 4444567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH---CCCCCchhhHHHHHHHH
Q 022131 191 LIGMFMALNRMDMVREIWNDVKGSG-LGPDLDSYTMLIHGLCEKQ-KWKEACQYFVEMIE---KGLLPQKVTFETLYRGL 265 (302)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~ 265 (302)
++.+++...+.....++++...... +++ .... .++.+...+. ..+.|.+.+.+=-+ ..+......+..++.+.
T Consensus 764 ll~aL~~~~d~~~l~~~L~~~l~~~~ir~-qd~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~ 841 (909)
T 4fke_A 764 LRSALACSNEVWLLNRYLGYTLNPDLIRK-QDAT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGV 841 (909)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTCTTTSCG-GGHH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHhCCCCCch-hhHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 8888888888888888888776543 222 2222 2333433322 23444454443211 12333445667777665
Q ss_pred hh----cchHHHHHHHHHhccc
Q 022131 266 IQ----SDMLRTWRRLKKKLDE 283 (302)
Q Consensus 266 ~~----~g~~~~a~~~~~~~~~ 283 (302)
.. ..+.++..++++.-.+
T Consensus 842 ~~~~~t~~~~~~~~~f~~~~~~ 863 (909)
T 4fke_A 842 TRRFSSEFELQQLEQFKKNNMD 863 (909)
T ss_dssp HTTCCSHHHHHHHHHHHTTCSS
T ss_pred HHhcCCHHHHHHHHHHHhhCCc
Confidence 53 3355556666554333
No 378
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=22.50 E-value=2.2e+02 Score=20.55 Aligned_cols=49 Identities=10% Similarity=0.198 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCC
Q 022131 131 EDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGL 180 (302)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 180 (302)
+.+..+++.+.+.|.-.|...-...++...+.+. .....+-.++...|+
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~-~G~~~I~~eL~~KGI 141 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTMINTDL-KGPGIIRQHLRQKGI 141 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHcCC
Confidence 4455666777777775555544555555444222 235556677777775
No 379
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=21.82 E-value=2e+02 Score=19.77 Aligned_cols=152 Identities=11% Similarity=-0.051 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 022131 113 TVATYSSVVKCLCSCGRIEDAEELLGEMVRNGVCPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDGLCVPNMHSYNILI 192 (302)
Q Consensus 113 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 192 (302)
+...-...+..+.+.+..+....+. ++.. .++...-...+.++...+..+.. ..+..+.. .++..+-...+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~----d~~~~vr~~a~ 97 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK----DEDGWVRQSAA 97 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT----CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc----CCCHHHHHHHH
Confidence 4444445555555555433333333 3333 25666666667777777765444 34444443 46777777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHhhcchHH
Q 022131 193 GMFMALNRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR 272 (302)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 272 (302)
.++.+.++.+.. ..+..+.. .++...-...+.++...++. .+...+..+.+ .++..+-...+.++...|..
T Consensus 98 ~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~- 168 (201)
T 3ltj_A 98 VALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGGE- 168 (201)
T ss_dssp HHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-
T ss_pred HHHHHhCcHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-
Confidence 888888876443 44444443 36777777778888887764 34444555443 35666777777777777764
Q ss_pred HHHHHHHhcc
Q 022131 273 TWRRLKKKLD 282 (302)
Q Consensus 273 ~a~~~~~~~~ 282 (302)
++...+..+.
T Consensus 169 ~~~~~L~~~l 178 (201)
T 3ltj_A 169 RVRAAMEKLA 178 (201)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3444444443
No 380
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.57 E-value=2.3e+02 Score=20.43 Aligned_cols=55 Identities=22% Similarity=0.193 Sum_probs=32.4
Q ss_pred hcCCchhHHHHHHHHHhcCCCcCHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHCCC
Q 022131 91 RAHQPQLSLDKLNFMKEKGICPTVATYSSVVKCLCSCGR-----IEDAEELLGEMVRNGV 145 (302)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 145 (302)
+..+++.|+-.+.+|++.|-.|.-..-..++-+.-..|. ...|...++.....|.
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 457788888888888888766554444444444444442 2334445555555555
No 381
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.29 E-value=2.1e+02 Score=19.71 Aligned_cols=29 Identities=7% Similarity=-0.028 Sum_probs=17.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 022131 120 VVKCLCSCGRIEDAEELLGEMVRNGVCPS 148 (302)
Q Consensus 120 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 148 (302)
.+...+..|+.+.-.++.+.+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 34444555666655666666666665544
No 382
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=21.22 E-value=78 Score=21.45 Aligned_cols=50 Identities=12% Similarity=0.237 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHCCCC-CchhhHHHHHHHHhh---cchHHHHHHHHHhccccCCC
Q 022131 235 KWKEACQYFVEMIEKGLL-PQKVTFETLYRGLIQ---SDMLRTWRRLKKKLDEESIT 287 (302)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~ 287 (302)
.+++|.+++..|++.-+. -.+..||.++..+.. .++. ..++..+.+.++.
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l---~~FW~~Iv~~~lg 126 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGIT 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCC---HHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcc
Confidence 567888888877754222 245667777766653 2333 4444455555544
No 383
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=20.91 E-value=1.7e+02 Score=21.24 Aligned_cols=159 Identities=10% Similarity=0.005 Sum_probs=80.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCChh-------hHHHHHHHHH--ccCCchHHHHHHHHHHhCC---------CCC
Q 022131 121 VKCLCSCGRIEDAEELLGEMVRNGVCPSAE-------TYNCFFKEYR--GRKDANGAMKLYRQMKEDG---------LCV 182 (302)
Q Consensus 121 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~~ 182 (302)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-...+ ...
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 344566789998888888877766555533 3344544432 5677777777766543311 001
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----------------HHHHHHHHHHcCCHHHHHHHHHHH
Q 022131 183 PNMHSYNILIGMFMALNRMDMVREIWNDVKGSGLGPDLDS----------------YTMLIHGLCEKQKWKEACQYFVEM 246 (302)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~li~~~~~~g~~~~a~~~~~~~ 246 (302)
.|....+ .+...+..|+.+-+..+++ .|..++... -...+...+..|+.+ +.+.+
T Consensus 89 ~d~~g~t-~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~----~v~~L 159 (260)
T 3jxi_A 89 VYYRGQT-ALHIAIERRCKHYVELLVE----KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH----IVHYL 159 (260)
T ss_dssp SSEESBC-HHHHHHHTTCHHHHHHHHH----TTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHH----HHHHH
T ss_pred cccCCCC-HHHHHHHcCCHHHHHHHHh----CCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHH----HHHHH
Confidence 1111222 3344456788765555544 454444332 122334445667755 44444
Q ss_pred HH---CCCCCch---hhHHHHHHHHhhc----chHHHHHHHHHhccccCCCc
Q 022131 247 IE---KGLLPQK---VTFETLYRGLIQS----DMLRTWRRLKKKLDEESITF 288 (302)
Q Consensus 247 ~~---~~~~p~~---~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~ 288 (302)
.+ .|..++. .-.+.|..++... +..+...++.+.+.+.|..+
T Consensus 160 l~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~ 211 (260)
T 3jxi_A 160 TENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL 211 (260)
T ss_dssp HHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence 55 5554433 2334444444321 12333345555565555444
No 384
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=20.73 E-value=34 Score=18.64 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=15.6
Q ss_pred CCcchHHHHHHHHHhCCCcccH
Q 022131 13 NRIDMAERFLGEMIERGVEPNV 34 (302)
Q Consensus 13 g~~~~a~~~~~~~~~~~~~~~~ 34 (302)
-+++.|...|.+. +..++|+.
T Consensus 33 Wd~~~A~~~F~~~-~~~IP~eA 53 (57)
T 2jp7_A 33 WNYEVAIKGFQSS-MNGIPREA 53 (57)
T ss_dssp TCSHHHHHHHHHS-TTTSCHHH
T ss_pred CCHHHHHHHHHHH-HcCCCHHH
Confidence 3789999999986 44577654
No 385
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=20.14 E-value=2.1e+02 Score=19.26 Aligned_cols=41 Identities=10% Similarity=-0.100 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCcccHHHHHHHHHHHHh
Q 022131 3 TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR 46 (302)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 46 (302)
+.++..+...|-+++. |..+....-.-+...+..++..|..
T Consensus 11 ~~~~~~l~~~g~LD~~---f~qL~~L~~~~~~~~~~ell~~Fl~ 51 (153)
T 3us6_A 11 VDYIKSMFMEGFLDGQ---FLQLQQLQDENNPEFVFEVVSLFFD 51 (153)
T ss_dssp HHHHHHHHHTTSCCHH---HHHHHHTCBTTBTTHHHHHHHHHHH
T ss_pred HHHHHhcccccchHHH---HHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 4556666666766633 4444443222345556666666654
No 386
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.05 E-value=1.6e+02 Score=17.91 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 022131 199 NRMDMVREIWNDVKGSGLGPDLDSYTMLIHGLCEKQKWKEAC 240 (302)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 240 (302)
...+.|.++++.+..+| ...|..++.++...|+...|.
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHH
Confidence 35566666666666553 235666666665555544443
Done!