Query 022133
Match_columns 302
No_of_seqs 258 out of 2269
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 14:30:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 2.7E-27 9.1E-32 213.3 20.7 210 47-256 8-248 (491)
2 3o7q_A L-fucose-proton symport 99.9 1.9E-23 6.6E-28 185.3 20.2 181 49-231 24-234 (438)
3 1pw4_A Glycerol-3-phosphate tr 99.9 1.3E-23 4.4E-28 187.0 13.1 183 48-233 25-212 (451)
4 2gfp_A EMRD, multidrug resista 99.9 3E-22 1E-26 174.2 12.2 176 54-232 3-179 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.8 7.5E-20 2.6E-24 164.7 16.9 169 55-226 17-194 (491)
6 2xut_A Proton/peptide symporte 99.8 5.2E-18 1.8E-22 153.9 17.0 167 58-227 19-197 (524)
7 4gc0_A D-xylose-proton symport 99.8 1.2E-18 4.2E-23 156.6 11.7 183 61-255 287-481 (491)
8 1pw4_A Glycerol-3-phosphate tr 99.7 3.8E-15 1.3E-19 132.2 17.4 173 53-228 254-433 (451)
9 2cfq_A Lactose permease; trans 99.5 2E-14 7E-19 126.7 10.1 140 91-231 262-403 (417)
10 3o7q_A L-fucose-proton symport 99.5 5.7E-14 1.9E-18 124.2 12.4 163 61-228 268-432 (438)
11 2cfq_A Lactose permease; trans 99.5 9.9E-16 3.4E-20 135.1 0.2 169 58-230 14-189 (417)
12 4aps_A DI-OR tripeptide H+ sym 99.5 4.3E-13 1.5E-17 120.4 14.4 162 66-231 298-475 (491)
13 2gfp_A EMRD, multidrug resista 99.2 5.6E-12 1.9E-16 109.2 3.2 155 54-214 202-362 (375)
14 2xut_A Proton/peptide symporte 99.0 1.3E-09 4.6E-14 98.5 11.7 113 91-203 338-467 (524)
15 2g9p_A Antimicrobial peptide l 70.7 2 7E-05 19.7 1.2 14 107-120 2-15 (26)
16 4dve_A Biotin transporter BIOY 31.8 74 0.0025 24.2 4.9 25 94-118 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=2.7e-27 Score=213.33 Aligned_cols=210 Identities=27% Similarity=0.498 Sum_probs=179.1
Q ss_pred chhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCC------cchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 022133 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNG------NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120 (302)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~ 120 (302)
+..+...++..++.++.+++.++++..++.+.++++.+. +....|++.+++.+|.++|++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 334445556677889999999999999998888775432 22345789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh------------------hcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHH
Q 022133 121 FQLCALPMIIGASISA------------------TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFI 182 (302)
Q Consensus 121 ~~~~~~~~~i~~~~~~------------------~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~ 182 (302)
++++.++..++.++++ ++++++.++++|+++|++.|+..+..+.+++|+.|+++|++..++.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 9999999999999887 4678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccC-------cchHHHHHHhHHHHHHHHHHhhccCCChHHHHHhCCHHHHHHHHHHHhCCC
Q 022133 183 QIATCLGLMGSLLIGIPVKEIA-------GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGS 255 (302)
Q Consensus 183 ~~~~~~g~~~~~~~~~~~~~~~-------g~w~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (302)
+.+..+|.++++.++..+.... .+||..+.+..+..++.++..+++||+|+|+..+++.+++.+.+++...++
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 9999999999888877654322 238888888888888888889999999999999999999888888766544
Q ss_pred c
Q 022133 256 H 256 (302)
Q Consensus 256 ~ 256 (302)
+
T Consensus 248 ~ 248 (491)
T 4gc0_A 248 L 248 (491)
T ss_dssp H
T ss_pred h
Confidence 3
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.91 E-value=1.9e-23 Score=185.26 Aligned_cols=181 Identities=15% Similarity=0.176 Sum_probs=157.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 022133 49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128 (302)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~ 128 (302)
.+..+..+.+..+..++......+..|.+.+++|.+..+. |++.+++.++.+++++++|+++||+|||++++++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 3445666677777788888888899999999999887765 89999999999999999999999999999999999999
Q ss_pred HHHHHHH---hhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccc-ccC
Q 022133 129 IIGASIS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-EIA 204 (302)
Q Consensus 129 ~i~~~~~---~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~ 204 (302)
+++.+++ +++++++.++++|++.|++.+...+...++++|++|+++|++++++.+.+..+|.+++|.+++.+. +..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999988 788999999999999999999999999999999999999999999999999999999999999988 655
Q ss_pred cc------------------------hHHHHHHhHHHHHHHHHHhhc--cCCC
Q 022133 205 GW------------------------WRICFWVSIVPAAILCLAMVF--CAES 231 (302)
Q Consensus 205 g~------------------------w~~~~~~~~~~~~~~~~~~~~--~pe~ 231 (302)
+. ||+.|++.++..++..+..++ .||+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~ 234 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPAL 234 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 54 899997766555554444433 3554
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.90 E-value=1.3e-23 Score=187.02 Aligned_cols=183 Identities=13% Similarity=0.053 Sum_probs=160.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 022133 48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP 127 (302)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~ 127 (302)
..++.+....++.+..++....+.+.+|.+.+++ .+..+. |++.+++.++..++++++|+++||+|||++++++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH--HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 3455566777778888888888889999999998 777666 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----cchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccccc
Q 022133 128 MIIGASISAT----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI 203 (302)
Q Consensus 128 ~~i~~~~~~~----~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 203 (302)
.+++.+++++ +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 899999999999999999999999999999999999999999999999999999999999887765
Q ss_pred CcchHHHHHHhHHHHHHH-HHHhhccCCChH
Q 022133 204 AGWWRICFWVSIVPAAIL-CLAMVFCAESPH 233 (302)
Q Consensus 204 ~g~w~~~~~~~~~~~~~~-~~~~~~~pe~~~ 233 (302)
.+.||+.|++.+++.++. ++.++++||+|+
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 544899998877766654 445567888764
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.87 E-value=3e-22 Score=174.21 Aligned_cols=176 Identities=17% Similarity=0.227 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 022133 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (302)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~ 133 (302)
..+.+..+..++......+.+|.+.+++|.+..+. +++.+++.++..++++++|+++||+|||++++.+.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH--HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 34556667777777888888999999999877665 8999999999999999999999999999999999999999999
Q ss_pred HHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHH
Q 022133 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (302)
Q Consensus 134 ~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~ 213 (302)
+.+++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+ ||+.|++
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~ 159 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988777 9999998
Q ss_pred hHHHHHHHHH-HhhccCCCh
Q 022133 214 SIVPAAILCL-AMVFCAESP 232 (302)
Q Consensus 214 ~~~~~~~~~~-~~~~~pe~~ 232 (302)
.++..++..+ ..+++||++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHCcccC
Confidence 7777666555 456678763
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.83 E-value=7.5e-20 Score=164.65 Aligned_cols=169 Identities=15% Similarity=0.160 Sum_probs=140.0
Q ss_pred HHHHHHHHHHhhhhccchhhhhh-hhh-----cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHH
Q 022133 55 VATLSSFLFGYHLGVVNEPLESI-SLD-----LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALP 127 (302)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~Grr~~~~~~~~~ 127 (302)
.+.+..+...+........++.+ .++ +|.+..+. +++.+++.++.+++++++|+++|| +|||++++.+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~ 94 (491)
T 4aps_A 17 TLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATA--ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVL 94 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 33444444444444443444433 333 77766655 899999999999999999999999 8999999999999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCc--cchhHhHHHHHHHHHHHHHHHHhhcccccCc
Q 022133 128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAG 205 (302)
Q Consensus 128 ~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~--R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 205 (302)
.+++.++++++++++.++++|++.|++.+...+...++++|++|+++ |+.++++++.+..+|..++|.+++.+.+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 174 (491)
T 4aps_A 95 IMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG 174 (491)
T ss_dssp HHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999998 7777888999999999999999999988888
Q ss_pred chHHHHHHhHHHHHHHHHHhh
Q 022133 206 WWRICFWVSIVPAAILCLAMV 226 (302)
Q Consensus 206 ~w~~~~~~~~~~~~~~~~~~~ 226 (302)
||+.|++.++..+++++..+
T Consensus 175 -~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 175 -YHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 99999987766666555443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.78 E-value=5.2e-18 Score=153.92 Aligned_cols=167 Identities=16% Similarity=0.148 Sum_probs=139.5
Q ss_pred HHHHHHHhhhhccchhhhh-hhhhcc------cCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHH
Q 022133 58 LSSFLFGYHLGVVNEPLES-ISLDLG------FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMI 129 (302)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-Grr~~~~~~~~~~~ 129 (302)
+..++..+..+...+.++. +.+++| ++..+. +++.+++.++..++++++|+++||+ |||++++++.++.+
T Consensus 19 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~ 96 (524)
T 2xut_A 19 ASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVA--KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC 96 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTH--HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3344444444444445544 456677 776665 8999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhcc-hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhH---HHHHHHHHHHHHHHHhhcccccCc
Q 022133 130 IGASISATTR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF---IQIATCLGLMGSLLIGIPVKEIAG 205 (302)
Q Consensus 130 i~~~~~~~~~-~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~g 205 (302)
++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.+. ++.+..+|.+++|.+++.+.+..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 176 (524)
T 2xut_A 97 VGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG 176 (524)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999988 999999999999999999999999999999999999877666 888999999999999999888777
Q ss_pred chHHHHHHhHHHHHHHHHHhhc
Q 022133 206 WWRICFWVSIVPAAILCLAMVF 227 (302)
Q Consensus 206 ~w~~~~~~~~~~~~~~~~~~~~ 227 (302)
|++.|++.++..++.++..++
T Consensus 177 -~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 177 -AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHHHHHHHHHHHH
Confidence 999999887776666555444
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.77 E-value=1.2e-18 Score=156.65 Aligned_cols=183 Identities=20% Similarity=0.132 Sum_probs=123.5
Q ss_pred HHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc--
Q 022133 61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-- 138 (302)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-- 138 (302)
+......+.+..+.+.+.+..+.+.... ........+...++.++.+++.||+|||+.++.+..+.+++.+..+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~ 364 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 364 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSSCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHhcchHHHHhcCCCccch--hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence 3333344455667777777766654443 456666777888999999999999999999999988887777655432
Q ss_pred ---chhHHHHHHH-HHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCc-----chHH
Q 022133 139 ---RNLIGMLLGR-FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-----WWRI 209 (302)
Q Consensus 139 ---~~~~~~~~~r-~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g-----~w~~ 209 (302)
++...++... +..+++. +..++.+.+.+|++|++.|++++++......+|.++++.+.+.+.+... .+..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~ 443 (491)
T 4gc0_A 365 TQAPGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGF 443 (491)
T ss_dssp TTCCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCH
T ss_pred cccchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 2222222222 2222322 3346778999999999999999999999999999988888776654221 0334
Q ss_pred HHHHhHHHHHH-HHHHhhccCCChHHHHHhCCHHHHHHHHHHHhCCC
Q 022133 210 CFWVSIVPAAI-LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGS 255 (302)
Q Consensus 210 ~~~~~~~~~~~-~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (302)
.|++.++++++ .++.++++||| |+++.| +++++++++
T Consensus 444 ~~~i~~~~~~~~~i~~~~~~PET------kg~tLe---ei~~~f~~~ 481 (491)
T 4gc0_A 444 SYWIYGCMGVLAALFMWKFVPET------KGKTLE---ELEALWEPE 481 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCC------TTCCHH---HHGGGTC--
T ss_pred HHHHHHHHHHHHHHHHHheecCC------CCCCHH---HHHHHhCCC
Confidence 55555555444 45566789999 888877 666666543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.65 E-value=3.8e-15 Score=132.18 Aligned_cols=173 Identities=16% Similarity=0.166 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHhhhhccchhhhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhh--hHHHHHHHHHHHHH
Q 022133 53 VLVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQLCALPMI 129 (302)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--Grr~~~~~~~~~~~ 129 (302)
++...+..++..........+.|.+.++ +|.+..+. +++.+...++.+++.++.|+++||+ |||+.+..+..+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 3344444455555555566777777766 67765554 8899999999999999999999999 99999888877766
Q ss_pred -HHHHHHhhc--chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHH-HHHHHHHHhhcccccCc
Q 022133 130 -IGASISATT--RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEIAG 205 (302)
Q Consensus 130 -i~~~~~~~~--~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~g 205 (302)
++.++..+. .+.+.+.+..++.|++.+...+....++.|.+|++.|+++.++++....+ |..++|.+.+.+.+..|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 411 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 411 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666666665 36667777888899988888888889999999999999999999999999 99999999999998888
Q ss_pred chHHHHHHhHHHHHHHHHHhhcc
Q 022133 206 WWRICFWVSIVPAAILCLAMVFC 228 (302)
Q Consensus 206 ~w~~~~~~~~~~~~~~~~~~~~~ 228 (302)
|+..|++.+++.+++.+..++.
T Consensus 412 -~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 412 -WDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHHHH
Confidence 8899888777777766655544
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.54 E-value=2e-14 Score=126.70 Aligned_cols=140 Identities=13% Similarity=0.005 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcC
Q 022133 91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS 170 (302)
Q Consensus 91 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~ 170 (302)
++..++..++.+++.++.|+++||+|||+++..+.++.+++.+..++.++.+.+++..++.+++.+...+....+++|.+
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 67777777888899999999999999999999888888887777777777777777777788877766677788999999
Q ss_pred CCCccchhHhH-HHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHH-hhccCCC
Q 022133 171 PPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA-MVFCAES 231 (302)
Q Consensus 171 p~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~-~~~~pe~ 231 (302)
|++.|+++.++ ++....+|.+++|.+++.+.+..| +...|.+.++..+++.+. +++.||+
T Consensus 342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 99999999998 588889999999999999888777 778888777776666554 4446665
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.53 E-value=5.7e-14 Score=124.18 Aligned_cols=163 Identities=14% Similarity=0.046 Sum_probs=124.6
Q ss_pred HHHHhhhhccchhhhhh-hhhc-ccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 022133 61 FLFGYHLGVVNEPLESI-SLDL-GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT 138 (302)
Q Consensus 61 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~ 138 (302)
++..........+.|.+ .++. |.+.... ++..+...++.+++.++.|+++||+|||+.+..+.++.+++.++..+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 345 (438)
T 3o7q_A 268 FCYVGAQTACWSYLIRYAVEEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA 345 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc
Confidence 33333334455566666 5554 7665554 888999999999999999999999999999999999998888888888
Q ss_pred chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHH
Q 022133 139 RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA 218 (302)
Q Consensus 139 ~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~ 218 (302)
++...++. .++.|++.+...+....+..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..|.++..|++.+++.
T Consensus 346 ~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 422 (438)
T 3o7q_A 346 GGHVGLIA-LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCF 422 (438)
T ss_dssp CHHHHHHH-HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHH
T ss_pred CCcHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 77765444 48888999999999999999999977 888888766 5568999999999999887664677777655554
Q ss_pred HHHHHHhhcc
Q 022133 219 AILCLAMVFC 228 (302)
Q Consensus 219 ~~~~~~~~~~ 228 (302)
++.++..++.
T Consensus 423 ~~~~~~~~~~ 432 (438)
T 3o7q_A 423 AVIFIFARFR 432 (438)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHH
Confidence 4444443433
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.52 E-value=9.9e-16 Score=135.13 Aligned_cols=169 Identities=17% Similarity=0.125 Sum_probs=111.0
Q ss_pred HHHHHHHhhhhccchhhhhhh-hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH---H
Q 022133 58 LSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA---S 133 (302)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~---~ 133 (302)
...+..........+++|.+. +++|.+..+. |++.+++.++..++++++|+++||+|||++++++..+.+++. .
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~ 91 (417)
T 2cfq_A 14 LFFFFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF 91 (417)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTS--HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 333344444455566777654 4578887766 899999999999999999999999999999998887765422 1
Q ss_pred HHhhcchh-HHHHHHHHHHhhhhcchhhhHHHHhhhcCCC--CccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHH
Q 022133 134 ISATTRNL-IGMLLGRFVVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC 210 (302)
Q Consensus 134 ~~~~~~~~-~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~--~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~ 210 (302)
...+.+.. ..+...+.+.|++.+..++.....+.++.+. +.|+...+....+..+|..++|.+++.+.+. + |+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~-~~~~ 169 (417)
T 2cfq_A 92 IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-N-NQFV 169 (417)
T ss_dssp HHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-C-SHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-c-hhHH
Confidence 11222211 1123445566655554444333444444332 4567777777777888889999998887763 4 8999
Q ss_pred HHHhHHHHHHHHHHhhccCC
Q 022133 211 FWVSIVPAAILCLAMVFCAE 230 (302)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~pe 230 (302)
|++.++..++.++..++.+|
T Consensus 170 f~~~~~~~~~~~~~~~~~~~ 189 (417)
T 2cfq_A 170 FWLGSGCALILAVLLFFAKT 189 (417)
T ss_dssp HTTTTTTTTTHHHHSCSSCC
T ss_pred HHHHHHHHHHHHHHHHHcCc
Confidence 98876665555555555444
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.48 E-value=4.3e-13 Score=120.44 Aligned_cols=162 Identities=8% Similarity=-0.029 Sum_probs=114.2
Q ss_pred hhhccchhhhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH-----HHHHHHHHHHHHHhhc-
Q 022133 66 HLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ-----LCALPMIIGASISATT- 138 (302)
Q Consensus 66 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~-----~~~~~~~i~~~~~~~~- 138 (302)
........++.+..+ .+.+..+. ++..+...++..++.++.++++||+|||+... .+.++.+++.++....
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
T 4aps_A 298 IEEQGSVVLATFAAERVDSSWFPV--SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPG 375 (491)
T ss_dssp HHGGGGTHHHHHHHHSCCCSSSCS--GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHhhccHHHHHHHHHHhccCccCH--HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555443 45443333 67778888888899999999999999986554 6666666666555442
Q ss_pred --------chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHH
Q 022133 139 --------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC 210 (302)
Q Consensus 139 --------~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~ 210 (302)
.+...+++..++.|++.+...+....++.|.+|++.|+++.++++....+|..+++.+.+.+.+.. +...
T Consensus 376 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~--~~~~ 453 (491)
T 4aps_A 376 ALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS--EVAY 453 (491)
T ss_dssp HHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS--TTHH
T ss_pred HhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHH
Confidence 256667778889999999988899999999999999999999999999999999999999887654 4455
Q ss_pred HHHhHHHHHHHHH-HhhccCCC
Q 022133 211 FWVSIVPAAILCL-AMVFCAES 231 (302)
Q Consensus 211 ~~~~~~~~~~~~~-~~~~~pe~ 231 (302)
|++.+...+++.+ .+++.++.
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 454 FSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555554444 44444443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.19 E-value=5.6e-12 Score=109.19 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhhhhccchhhhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH-HHHH
Q 022133 54 LVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP-MIIG 131 (302)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~-~~i~ 131 (302)
....+..+...........+.|.+.++ +|.+.... +++.+...++..++.++.+++.||+|++. ..+..+ ...+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~ 277 (375)
T 2gfp_A 202 NCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTV--SILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAG 277 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHH--HHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 333444444444444555666766555 67765544 88899999999999999999999999833 233322 2222
Q ss_pred HH--HHhh--cchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcch
Q 022133 132 AS--ISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW 207 (302)
Q Consensus 132 ~~--~~~~--~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w 207 (302)
.. .... .++.+.+++..++.|++.+...+....++.|.+| ++|+++.++.+....+|..++|.+.+.+.+..+ +
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-~ 355 (375)
T 2gfp_A 278 LLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ-G 355 (375)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-H
T ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c
Confidence 21 1122 2356666777888999999989999999999998 899999999999999999999999888876555 6
Q ss_pred HHHHHHh
Q 022133 208 RICFWVS 214 (302)
Q Consensus 208 ~~~~~~~ 214 (302)
...+++.
T Consensus 356 ~~~~~~~ 362 (375)
T 2gfp_A 356 SLGLLMT 362 (375)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 6666553
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.03 E-value=1.3e-09 Score=98.46 Aligned_cols=113 Identities=13% Similarity=0.150 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh----hhhhHH----HHHHHHHHHHHHHHHHHhhc---------chhHHHHHHHHHHhh
Q 022133 91 GLVVSMCLGGAFIGSTLSGWIA----DGVGRR----RAFQLCALPMIIGASISATT---------RNLIGMLLGRFVVGT 153 (302)
Q Consensus 91 ~~~~~~~~~~~~i~~~~~g~l~----d~~Grr----~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~r~~~g~ 153 (302)
+++.+...++..++.++.+++. ||.|+| +.+.++.++.+++.++.++. .+.+.+++..++.|+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 417 (524)
T 2xut_A 338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF 417 (524)
T ss_dssp HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence 5555555566666777776654 555432 45667777777777666553 356667778899999
Q ss_pred hhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccccc
Q 022133 154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI 203 (302)
Q Consensus 154 ~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 203 (302)
+.+...+....++.|.+|++.||+++|+++....+|..++|.+.+.+.+.
T Consensus 418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999988764
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=70.74 E-value=2 Score=19.74 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=11.4
Q ss_pred HHHhhhhhhhHHHH
Q 022133 107 LSGWIADGVGRRRA 120 (302)
Q Consensus 107 ~~g~l~d~~Grr~~ 120 (302)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=31.76 E-value=74 Score=24.17 Aligned_cols=25 Identities=8% Similarity=-0.059 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHH
Q 022133 94 VSMCLGGAFIGSTLSGWIADGVGRR 118 (302)
Q Consensus 94 ~~~~~~~~~i~~~~~g~l~d~~Grr 118 (302)
+..|.+|+.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3557788889999999999987543
Done!