Your job contains 1 sequence.
>022136
MAVEATSSFLSCSSKTHFLFNLRASSSPSSWKKFTQSANFAAKNRHVCRNERPNVSCSAA
AFAVQETLEKTRESVMASSAKEMMPKIDKSGRFCSPRAARELALLVVYAACLEGSDPIRL
FEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAEVLS
APPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMS
EITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEVPS
EV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022136
(302 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2131428 - symbol:AT4G26370 species:3702 "Arabi... 891 2.8e-89 1
UNIPROTKB|P65582 - symbol:nusB "N utilization substance p... 104 3.4e-05 1
UNIPROTKB|Q9KPU5 - symbol:nusB "N utilization substance p... 109 7.7e-05 1
TIGR_CMR|VC_2267 - symbol:VC_2267 "N utilization substanc... 109 7.7e-05 1
TIGR_CMR|CJE_0431 - symbol:CJE_0431 "transcription antite... 97 0.00020 1
TIGR_CMR|CPS_1532 - symbol:CPS_1532 "transcription termin... 89 0.00048 2
TIGR_CMR|GSU_1692 - symbol:GSU_1692 "N utilization substa... 90 0.00054 2
>TAIR|locus:2131428 [details] [associations]
symbol:AT4G26370 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009073 "aromatic amino acid
family biosynthetic process" evidence=RCA] [GO:0010103 "stomatal
complex morphogenesis" evidence=RCA] [GO:0016226 "iron-sulfur
cluster assembly" evidence=RCA] [GO:0042793 "transcription from
plastid promoter" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR006027
Pfam:PF01029 GO:GO:0009507 EMBL:CP002687 GO:GO:0006355
GO:GO:0003723 Gene3D:1.10.940.10 SUPFAM:SSF48013 EMBL:AY054564
EMBL:BT008707 IPI:IPI00535428 RefSeq:NP_567745.1 UniGene:At.2177
ProteinModelPortal:Q93XY7 SMR:Q93XY7 STRING:Q93XY7 PRIDE:Q93XY7
EnsemblPlants:AT4G26370.1 GeneID:828743 KEGG:ath:AT4G26370
TAIR:At4g26370 HOGENOM:HOG000240288 InParanoid:Q93XY7 OMA:PPKLVYS
PhylomeDB:Q93XY7 ProtClustDB:CLSN2689621 Genevestigator:Q93XY7
Uniprot:Q93XY7
Length = 301
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 186/300 (62%), Positives = 221/300 (73%)
Query: 3 VEATSSFLSCSSKTHFLFNLRASSSPSSWKK--FTQSANFAAKNRHVCRNERPNVSCSAA 60
+E T S L S ++ + ++ SP S + FT + N R S S+
Sbjct: 1 MEGTFSPLCLRSSSNLCY-FSSNVSPDSHRSIGFTLVDSLRPTNLVSLRTGNKRSSSSSL 59
Query: 61 AFAVQETLEKTRE-SVMASSAKEM-MPKIDKSGRFCSPRAARELALLVVYAACLEGSDPI 118
+ T R ++ A K++ MPKIDKSGR SPRAARELAL+++YAACLEGSDPI
Sbjct: 60 RLFLSPTRSALRTPTISAEEVKDVPMPKIDKSGRLSSPRAARELALVILYAACLEGSDPI 119
Query: 119 RLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAEV 178
RLFEKR+N+RREPGYEFDKSSLLEYNHMSFGGPPV TET EE DEL+R DE+ES IEAEV
Sbjct: 120 RLFEKRINARREPGYEFDKSSLLEYNHMSFGGPPVKTETKEEEDELVRHDEKESKIEAEV 179
Query: 179 LSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLA 238
LSAPPKLVYSKL+LRF +KLL AVVDKWD+HV II+K+ PP WK PAGRILE SILHLA
Sbjct: 180 LSAPPKLVYSKLVLRFAKKLLAAVVDKWDSHVVIIEKISPPDWKSAPAGRILEFSILHLA 239
Query: 239 MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEV 298
MSE+ V+ TRH IVINEAVDLAKRFCDG+APRIINGCLRTFV++ T+ +A + +EV
Sbjct: 240 MSEVAVLETRHPIVINEAVDLAKRFCDGSAPRIINGCLRTFVKDRATTSTPQALELKQEV 299
>UNIPROTKB|P65582 [details] [associations]
symbol:nusB "N utilization substance protein B homolog"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00073 InterPro:IPR006027
InterPro:IPR011605 Pfam:PF01029 GO:GO:0006355 GO:GO:0003723
EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0006353
eggNOG:COG0781 HOGENOM:HOG000281867 KO:K03625 ProtClustDB:PRK00202
Gene3D:1.10.940.10 PANTHER:PTHR11078 SUPFAM:SSF48013
TIGRFAMs:TIGR01951 PIR:B95050 RefSeq:NP_344955.1
ProteinModelPortal:P65582 EnsemblBacteria:EBSTRT00000026414
GeneID:930369 KEGG:spn:SP_0433 PATRIC:19705211 OMA:TGVKDHE
Uniprot:P65582
Length = 140
Score = 104 (41.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 229 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 280
++E ++L L + EIT T + +NEA++LAK F D + R ING L FV
Sbjct: 85 LVERNLLRLGVFEITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFV 136
>UNIPROTKB|Q9KPU5 [details] [associations]
symbol:nusB "N utilization substance protein B homolog"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0006353 "DNA-dependent transcription, termination"
evidence=ISS] HAMAP:MF_00073 InterPro:IPR006027 InterPro:IPR011605
Pfam:PF01029 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003723 GO:GO:0006353 eggNOG:COG0781 KO:K03625
ProtClustDB:PRK00202 Gene3D:1.10.940.10 PANTHER:PTHR11078
SUPFAM:SSF48013 TIGRFAMs:TIGR01951 OMA:IPYKVVI PIR:B82098
RefSeq:NP_231898.1 ProteinModelPortal:Q9KPU5 SMR:Q9KPU5
DNASU:2613189 GeneID:2613189 KEGG:vch:VC2267 PATRIC:20083575
Uniprot:Q9KPU5
Length = 156
Score = 109 (43.4 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 39/126 (30%), Positives = 64/126 (50%)
Query: 153 VTTETVEEADE-LLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVH 211
+T E V +E L S + + E E +A P L + + + R LL VV H
Sbjct: 26 ITKENVATIEEQFLTSGKYD---EEEHRAAEPALAAPETDVSYFRDLLAGVVLN---HNE 79
Query: 212 IIDKVVPPIWKDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGAAPR 270
+ K+ P + + ++EL++L LAM E+T +++VINEA++LAK F + +
Sbjct: 80 LDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHK 139
Query: 271 IINGCL 276
+NG L
Sbjct: 140 FVNGVL 145
>TIGR_CMR|VC_2267 [details] [associations]
symbol:VC_2267 "N utilization substance protein B"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006353
"DNA-dependent transcription, termination" evidence=ISS]
HAMAP:MF_00073 InterPro:IPR006027 InterPro:IPR011605 Pfam:PF01029
GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0006353 eggNOG:COG0781 KO:K03625 ProtClustDB:PRK00202
Gene3D:1.10.940.10 PANTHER:PTHR11078 SUPFAM:SSF48013
TIGRFAMs:TIGR01951 OMA:IPYKVVI PIR:B82098 RefSeq:NP_231898.1
ProteinModelPortal:Q9KPU5 SMR:Q9KPU5 DNASU:2613189 GeneID:2613189
KEGG:vch:VC2267 PATRIC:20083575 Uniprot:Q9KPU5
Length = 156
Score = 109 (43.4 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 39/126 (30%), Positives = 64/126 (50%)
Query: 153 VTTETVEEADE-LLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVH 211
+T E V +E L S + + E E +A P L + + + R LL VV H
Sbjct: 26 ITKENVATIEEQFLTSGKYD---EEEHRAAEPALAAPETDVSYFRDLLAGVVLN---HNE 79
Query: 212 IIDKVVPPIWKDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGAAPR 270
+ K+ P + + ++EL++L LAM E+T +++VINEA++LAK F + +
Sbjct: 80 LDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHK 139
Query: 271 IINGCL 276
+NG L
Sbjct: 140 FVNGVL 145
>TIGR_CMR|CJE_0431 [details] [associations]
symbol:CJE_0431 "transcription antitermination factor
NusB" species:195099 "Campylobacter jejuni RM1221" [GO:0006353
"DNA-dependent transcription, termination" evidence=ISS]
HAMAP:MF_00073 InterPro:IPR006027 InterPro:IPR011605 Pfam:PF01029
GO:GO:0006355 GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0006353 eggNOG:COG0781 HOGENOM:HOG000281867 KO:K03625
ProtClustDB:PRK00202 Gene3D:1.10.940.10 PANTHER:PTHR11078
SUPFAM:SSF48013 TIGRFAMs:TIGR01951 RefSeq:YP_178450.1
ProteinModelPortal:Q5HW85 STRING:Q5HW85 PRIDE:Q5HW85 GeneID:3231193
KEGG:cjr:CJE0431 PATRIC:20042562 OMA:QMPGVDK
BioCyc:CJEJ195099:GJC0-436-MONOMER Uniprot:Q5HW85
Length = 132
Score = 97 (39.2 bits), Expect = 0.00020, P = 0.00020
Identities = 27/90 (30%), Positives = 45/90 (50%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRI--LELSILHLAMSEITVVGTRHQI 251
FT L ++D +++ ID+ + D + +E +IL L E+ T I
Sbjct: 44 FTLNLYNGILD----NLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTDTPSAI 99
Query: 252 VINEAVDLAKRFCDGAAPRIINGCLRTFVR 281
VINEA++LAK + +P+ ING L ++
Sbjct: 100 VINEAIELAKELANDNSPKFINGVLDALIK 129
>TIGR_CMR|CPS_1532 [details] [associations]
symbol:CPS_1532 "transcription termination/antitermination
factor NusB" species:167879 "Colwellia psychrerythraea 34H"
[GO:0006353 "DNA-dependent transcription, termination"
evidence=ISS] HAMAP:MF_00073 InterPro:IPR006027 InterPro:IPR011605
Pfam:PF01029 GO:GO:0006355 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006353 eggNOG:COG0781 KO:K03625
Gene3D:1.10.940.10 PANTHER:PTHR11078 SUPFAM:SSF48013
TIGRFAMs:TIGR01951 RefSeq:YP_268274.1 HSSP:Q9X286
ProteinModelPortal:Q485J1 SMR:Q485J1 STRING:Q485J1 GeneID:3519785
KEGG:cps:CPS_1532 PATRIC:21466271 HOGENOM:HOG000281868 OMA:IPYKVVI
BioCyc:CPSY167879:GI48-1613-MONOMER Uniprot:Q485J1
Length = 138
Score = 89 (36.4 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 213 IDKVVPPIWKDQPAGRI--LELSILHLAMSEIT-VVGTRHQIVINEAVDLAKRFCDGAAP 269
ID+ + P + D+P I +E +IL +A+ E+ +++VINEA++LAK F +
Sbjct: 62 IDEAIIP-YVDRPLDDIDQVEKAILRVAVFELKDCTDVPYRVVINEAIELAKSFAADDSH 120
Query: 270 RIINGCLRTFVR 281
+ +NG L V+
Sbjct: 121 KFVNGVLDKTVK 132
Score = 45 (20.9 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 95 SPRA-ARELALLVVYAACLEGSDPIRLFEKRL---NSRREPGYEFDKSSLLEYNHMSFGG 150
SPR ARELA+ VY+ + +P+ E NS+R FD +EY + G
Sbjct: 4 SPRRKARELAVQAVYSWQVS-KNPVNDIEVNFIADNSKRR----FD----IEYFQLLLRG 54
Query: 151 PPVTTETVEEA 161
+++EA
Sbjct: 55 VTTNIGSIDEA 65
>TIGR_CMR|GSU_1692 [details] [associations]
symbol:GSU_1692 "N utilization substance protein B"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006353
"DNA-dependent transcription, termination" evidence=ISS]
HAMAP:MF_00073 InterPro:IPR006027 InterPro:IPR011605 Pfam:PF01029
GO:GO:0006355 GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0006353 eggNOG:COG0781 HOGENOM:HOG000281867 KO:K03625
Gene3D:1.10.940.10 PANTHER:PTHR11078 SUPFAM:SSF48013
TIGRFAMs:TIGR01951 OMA:QMPGVDK HSSP:Q9X286 RefSeq:NP_952743.1
ProteinModelPortal:Q74CI1 GeneID:2685421 KEGG:gsu:GSU1692
PATRIC:22026233 ProtClustDB:CLSK828489
BioCyc:GSUL243231:GH27-1722-MONOMER Uniprot:Q74CI1
Length = 138
Score = 90 (36.7 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 209 HVHIIDKVVPPIWKDQPAGRI--LELSILHLAMSEITVVGT-RHQIVINEAVDLAKRFCD 265
H ID + K+ GR+ ++LSIL +AM E+ + INEA+++AK+F
Sbjct: 57 HRQEIDTAITGASKNWSIGRMARVDLSILRMAMYELLFRSDIPKNVTINEAIEVAKKFGT 116
Query: 266 GAAPRIINGCL 276
+P ING L
Sbjct: 117 EDSPAFINGIL 127
Score = 43 (20.2 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 97 RAARELALLVVYAACLEGSDPIRLFEKRLNSRREPG 132
R RELAL ++Y+ + L E L+ EPG
Sbjct: 5 RLGRELALQMLYSRDYAAGEAAPLLELVLDES-EPG 39
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.130 0.371 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 302 302 0.00097 115 3 11 22 0.39 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 618 (66 KB)
Total size of DFA: 204 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.69u 0.13s 24.82t Elapsed: 00:00:01
Total cpu time: 24.69u 0.13s 24.82t Elapsed: 00:00:01
Start: Sat May 11 07:33:11 2013 End: Sat May 11 07:33:12 2013