Query 022136
Match_columns 302
No_of_seqs 183 out of 1670
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 14:32:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r2d_A Protein NUSB, N utiliza 100.0 9.8E-35 3.3E-39 247.7 12.4 138 95-290 4-142 (149)
2 1tzv_A NUSB protein, N utiliza 100.0 1.3E-34 4.4E-39 243.8 12.8 134 94-287 3-138 (142)
3 3d3b_A Protein NUSB, N utiliza 100.0 6.9E-34 2.4E-38 239.1 12.9 131 95-285 7-138 (141)
4 1eyv_A NUSB protein, N-utilizi 100.0 4.6E-33 1.6E-37 238.9 11.5 134 94-283 8-142 (156)
5 1sqg_A SUN protein, FMU protei 99.9 8.3E-24 2.8E-28 203.2 13.9 125 98-284 6-130 (429)
6 2yxl_A PH0851 protein, 450AA l 99.9 7E-24 2.4E-28 205.5 9.9 131 91-282 5-140 (450)
7 1q8c_A Hypothetical protein Mg 63.6 26 0.00088 29.2 7.5 55 224-279 96-150 (151)
8 1v54_E Cytochrome C oxidase po 19.3 1.1E+02 0.0036 25.0 3.9 49 231-279 25-75 (109)
9 2zc2_A DNAD-like replication p 15.7 87 0.003 22.6 2.4 32 250-282 37-68 (78)
10 2i5u_A DNAD domain protein; st 13.6 96 0.0033 22.9 2.2 32 250-282 42-73 (83)
No 1
>3r2d_A Protein NUSB, N utilization substance protein B; cross species NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB: 2jr0_A 3r2c_A* 4eya_A
Probab=100.00 E-value=9.8e-35 Score=247.66 Aligned_cols=138 Identities=25% Similarity=0.416 Sum_probs=117.4
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccCCCCCccchhhhhhhhcccCCCCCCcccchhhHHHhhhhhhHHHHH
Q 022136 95 SPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAI 174 (302)
Q Consensus 95 ~R~~ARe~Avq~LYq~e~~g~~~~e~l~~~l~~~~~~~~e~d~~~l~e~~~~~~g~~~~~~~~~ee~~~l~~~~~~~~~~ 174 (302)
.|+++|++|+|+||+++.+|.+++++++.++... .
T Consensus 4 ~R~~aR~~A~q~L~~~~~~~~~~~~~l~~~~~~~------------------~--------------------------- 38 (149)
T 3r2d_A 4 YRKGARDTAFLVLYRWDLRGENPGELFKEVVEEK------------------N--------------------------- 38 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH------------------T---------------------------
T ss_pred cHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhc------------------c---------------------------
Confidence 6899999999999999999999999988766410 0
Q ss_pred HHhhhcCCCcccccHHHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCCCCCcchhHHHHHHHHHHHhhhcc-CCChhhHH
Q 022136 175 EAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVV-GTRHQIVI 253 (302)
Q Consensus 175 ~~~~~~~~~~l~~~~~Drafa~eLV~GVlr~~~~LD~iI~~~L~k~W~leRL~~vLDRaILRlAlyELl~~-diP~~VaI 253 (302)
..+..|++|+++||+||++|+..||++|++++ ++|+++||+++ +++|||+|+|||+|+ ++|++|+|
T Consensus 39 -----------~~~~~dr~~~~~lv~gvl~~~~~lD~~i~~~l-~~w~~~rl~~~-~r~iLrla~yEl~~~~~iP~~vaI 105 (149)
T 3r2d_A 39 -----------IKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHL-KGWSIDRLGYV-ERNALRLGVAELIFLKSKEPGRVF 105 (149)
T ss_dssp -----------CCCHHHHHHHHHHHHHHHHTHHHHHHHHHTTC----CGGGSCHH-HHHHHHHHHHHHTTSCCSCHHHHH
T ss_pred -----------cCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-cCCCccccCHH-HHHHHHHHHHHHHHcCCCCCeehH
Confidence 02357899999999999999999999999999 68999999999 799999999999998 79999999
Q ss_pred HHHHHHHHhhCCCCCCCchhHHHhHHHhhhhcccccc
Q 022136 254 NEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIE 290 (302)
Q Consensus 254 NEAVELAKky~~~~s~gFVNAVLrkI~R~l~~~e~~~ 290 (302)
||||+|||.|++++++||||||||++.++.++.+.+.
T Consensus 106 nEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~~~~~~ 142 (149)
T 3r2d_A 106 IDIVDLVKKYADEKAGKFVNGVLSAIYKAYITSSKEE 142 (149)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhCCCCccccchHHhhHHHHhhccccccc
Confidence 9999999999999999999999999999998876643
No 2
>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A*
Probab=100.00 E-value=1.3e-34 Score=243.79 Aligned_cols=134 Identities=17% Similarity=0.311 Sum_probs=120.0
Q ss_pred CCcHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHhccCCCCCccchhhhhhhhcccCCCCCCcccchhhHHHhhhhhhHHH
Q 022136 94 CSPRAARELALLVVYAACLEGS-DPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEES 172 (302)
Q Consensus 94 ~~R~~ARe~Avq~LYq~e~~g~-~~~e~l~~~l~~~~~~~~e~d~~~l~e~~~~~~g~~~~~~~~~ee~~~l~~~~~~~~ 172 (302)
.+|+.+|+.|+|+||+++.+|. +++++++.++. . .
T Consensus 3 ~~r~~aR~~A~~~L~~~~~~~~~~~~~~l~~~~~-~------------------~------------------------- 38 (142)
T 1tzv_A 3 TPRRRMRLAVFKALFQHEFRRDEDLEQILEEILD-E------------------T------------------------- 38 (142)
T ss_dssp CCHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHCC-T------------------T-------------------------
T ss_pred CchHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-h------------------c-------------------------
Confidence 3688999999999999999998 88888765442 0 0
Q ss_pred HHHHhhhcCCCcccccHHHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCCCCCcchhHHHHHHHHHHHhhhcc-CCChhh
Q 022136 173 AIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVV-GTRHQI 251 (302)
Q Consensus 173 ~~~~~~~~~~~~l~~~~~Drafa~eLV~GVlr~~~~LD~iI~~~L~k~W~leRL~~vLDRaILRlAlyELl~~-diP~~V 251 (302)
+++.|++|+++|++||++|+..||++|++++ ++|+++|++++ +++|||+|+|||+|+ ++|++|
T Consensus 39 --------------l~~~d~~~~~~Lv~gvl~~~~~lD~~I~~~l-~~w~l~rl~~~-~r~iLrla~yEl~~~~~iP~~v 102 (142)
T 1tzv_A 39 --------------YDKKAKEDARRYIRGIKENLSMIDDLISRYL-EKWSLNRLSVV-DRNVLRLATYELLFEKDIPIEV 102 (142)
T ss_dssp --------------SCHHHHHHHHHHHHHHHHTHHHHHHHHHTTC-SSSCGGGSCHH-HHHHHHHHHHHHHHCTTSCHHH
T ss_pred --------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCChHHCCHH-HHHHHHHHHHHHHhcCCCCchh
Confidence 2346899999999999999999999999999 57999999999 799999999999997 699999
Q ss_pred HHHHHHHHHHhhCCCCCCCchhHHHhHHHhhhhccc
Q 022136 252 VINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 287 (302)
Q Consensus 252 aINEAVELAKky~~~~s~gFVNAVLrkI~R~l~~~e 287 (302)
+|||||+|||+|++++++||||||||++.+..+..+
T Consensus 103 aInEaVelaK~~~~~~~~~fVNgVL~~i~r~~~~~~ 138 (142)
T 1tzv_A 103 TIDEAIEIAKRYGTENSGKFVNGILDRIAKEHAPKE 138 (142)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHCCCcchhhHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999887654
No 3
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A
Probab=100.00 E-value=6.9e-34 Score=239.07 Aligned_cols=131 Identities=22% Similarity=0.291 Sum_probs=117.5
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccCCCCCccchhhhhhhhcccCCCCCCcccchhhHHHhhhhhhHHHHH
Q 022136 95 SPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAI 174 (302)
Q Consensus 95 ~R~~ARe~Avq~LYq~e~~g~~~~e~l~~~l~~~~~~~~e~d~~~l~e~~~~~~g~~~~~~~~~ee~~~l~~~~~~~~~~ 174 (302)
.|+.+|++|+|+||+++..|.+.++++..++... .
T Consensus 7 ~R~~aR~~A~~~L~~~~~~~~~~~~~~~~~~~~~------------------~--------------------------- 41 (141)
T 3d3b_A 7 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ------------------D--------------------------- 41 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHS------------------C---------------------------
T ss_pred hHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHhc------------------c---------------------------
Confidence 6889999999999999999988988876655310 0
Q ss_pred HHhhhcCCCcccccHHHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCCCCCcchhHHHHHHHHHHHhhhcc-CCChhhHH
Q 022136 175 EAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVV-GTRHQIVI 253 (302)
Q Consensus 175 ~~~~~~~~~~l~~~~~Drafa~eLV~GVlr~~~~LD~iI~~~L~k~W~leRL~~vLDRaILRlAlyELl~~-diP~~VaI 253 (302)
+++.|++|+++||+||++|+..||++|++++ + |+++|++++ +++|||+|+|||+|+ ++|++|+|
T Consensus 42 ------------l~~~d~~~~~~Lv~gvl~~~~~lD~~I~~~l-~-~~l~rl~~~-~r~iLrla~yEll~~~~iP~~vaI 106 (141)
T 3d3b_A 42 ------------VKDVDVLYFRELLAGVATNTAYLDGLMKPYL-S-RLLEELGQV-EKAVLRIALYELSKRSDVPYKVAI 106 (141)
T ss_dssp ------------CTTSCHHHHHHHHHHHHHTHHHHHHHHGGGG-T-TCSSCCCHH-HHHHHHHHHHHHHHCTTSCHHHHH
T ss_pred ------------CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHc-C-CCHHHcCHH-HHHHHHHHHHHHHhCCCCCchhhH
Confidence 1235789999999999999999999999999 4 999999999 799999999999997 79999999
Q ss_pred HHHHHHHHhhCCCCCCCchhHHHhHHHhhhhc
Q 022136 254 NEAVDLAKRFCDGAAPRIINGCLRTFVRNLEG 285 (302)
Q Consensus 254 NEAVELAKky~~~~s~gFVNAVLrkI~R~l~~ 285 (302)
||||+|||+|+++++++|||||||++.+.+++
T Consensus 107 nEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~ 138 (141)
T 3d3b_A 107 NEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 138 (141)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998765
No 4
>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1
Probab=100.00 E-value=4.6e-33 Score=238.93 Aligned_cols=134 Identities=20% Similarity=0.276 Sum_probs=113.2
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccCCCCCccchhhhhhhhcccCCCCCCcccchhhHHHhhhhhhHHHH
Q 022136 94 CSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESA 173 (302)
Q Consensus 94 ~~R~~ARe~Avq~LYq~e~~g~~~~e~l~~~l~~~~~~~~e~d~~~l~e~~~~~~g~~~~~~~~~ee~~~l~~~~~~~~~ 173 (302)
.+|+++|++|+|+||+++.+|.+.++++...... .+
T Consensus 8 ~~R~~aR~~Alq~L~~~~~~~~~~~~~l~~~~~l-------------~~------------------------------- 43 (156)
T 1eyv_A 8 RGRHQARKRAVALLFEAEVRGISAAEVVDTRAAL-------------AE------------------------------- 43 (156)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH-------------HH-------------------------------
T ss_pred cchHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhc-------------cc-------------------------------
Confidence 3689999999999999999999888877654210 00
Q ss_pred HHHhhhcCCCcccccHHHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCCCCCcchhHHHHHHHHHHHhhhcc-CCChhhH
Q 022136 174 IEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVV-GTRHQIV 252 (302)
Q Consensus 174 ~~~~~~~~~~~l~~~~~Drafa~eLV~GVlr~~~~LD~iI~~~L~k~W~leRL~~vLDRaILRlAlyELl~~-diP~~Va 252 (302)
.+ . ....+++|+++|++||++|+..||++|++++ ++|+++|++++ +++|||+|+|||+|+ ++|++++
T Consensus 44 --~d--~------~~~~~~~~~~~lv~gvl~~~~~lD~~i~~~l-~~w~l~rl~~~-~r~iLrla~yel~~~~~iP~~v~ 111 (156)
T 1eyv_A 44 --AK--P------DIARLHPYTAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAV-DRAILRVSVWELLHAADVPEPVV 111 (156)
T ss_dssp --HC--T------TSCCCCHHHHHHHHHHHHTHHHHHHHHHTTS-TTCCGGGSCHH-HHHHHHHHHHHHHHCTTSCHHHH
T ss_pred --cc--c------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-cCCChhhCCHH-HHHHHHHHHHHHHHcCCCCchhH
Confidence 00 0 0124589999999999999999999999999 68999999999 799999999999998 6999999
Q ss_pred HHHHHHHHHhhCCCCCCCchhHHHhHHHhhh
Q 022136 253 INEAVDLAKRFCDGAAPRIINGCLRTFVRNL 283 (302)
Q Consensus 253 INEAVELAKky~~~~s~gFVNAVLrkI~R~l 283 (302)
|||||+|||+|+++++++|||||||++.+..
T Consensus 112 InEaVelak~~~~~~~~~fVNgVLr~i~r~~ 142 (156)
T 1eyv_A 112 VDEAVQLAKELSTDDSPGFVNGVLGQVMLVT 142 (156)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHhH
Confidence 9999999999999999999999999998653
No 5
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=99.90 E-value=8.3e-24 Score=203.24 Aligned_cols=125 Identities=17% Similarity=0.162 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhccCCCCCccchhhhhhhhcccCCCCCCcccchhhHHHhhhhhhHHHHHHHh
Q 022136 98 AARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAE 177 (302)
Q Consensus 98 ~ARe~Avq~LYq~e~~g~~~~e~l~~~l~~~~~~~~e~d~~~l~e~~~~~~g~~~~~~~~~ee~~~l~~~~~~~~~~~~~ 177 (302)
.+|+.|+|+||+++.+|.++++++......
T Consensus 6 ~aR~~A~~~L~~~~~~~~~~~~~l~~~~~~-------------------------------------------------- 35 (429)
T 1sqg_A 6 NLRSMAAQAVEQVVEQGQSLSNILPPLQQK-------------------------------------------------- 35 (429)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHHHHHHHTT--------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhh--------------------------------------------------
Confidence 489999999999999999999887653210
Q ss_pred hhcCCCcccccHHHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCCCCCcchhHHHHHHHHHHHhhhccCCChhhHHHHHH
Q 022136 178 VLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVVGTRHQIVINEAV 257 (302)
Q Consensus 178 ~~~~~~~l~~~~~Drafa~eLV~GVlr~~~~LD~iI~~~L~k~W~leRL~~vLDRaILRlAlyELl~~diP~~VaINEAV 257 (302)
++..|++|+++||+||++|+..||++|+.+++ + +++|++++ +++|||+|+|||+|+++|++++|||+|
T Consensus 36 ---------~~~~dr~~~~~lv~gvlr~~~~ld~~i~~~~~-~-~~~~~~~~-~~~iLrl~~yel~~~~~p~~~~ineaV 103 (429)
T 1sqg_A 36 ---------VSDKDKALLQELCFGVLRTLSQLDWLINKLMA-R-PMTGKQRT-VHYLIMVGLYQLLYTRIPPHAALAETV 103 (429)
T ss_dssp ---------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-S-CCCGGGHH-HHHHHHHHHHHHHHCCSCHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC-C-ChhhcCHH-HHHHHHHHHHHHhhCCCCchHhhHHHH
Confidence 23478999999999999999999999999994 4 88999999 799999999999999999999999999
Q ss_pred HHHHhhCCCCCCCchhHHHhHHHhhhh
Q 022136 258 DLAKRFCDGAAPRIINGCLRTFVRNLE 284 (302)
Q Consensus 258 ELAKky~~~~s~gFVNAVLrkI~R~l~ 284 (302)
++||+|+.+++++|||||||++.+...
T Consensus 104 elak~~~~~~~~~fvN~vL~~~~r~~~ 130 (429)
T 1sqg_A 104 EGAIAIKRPQLKGLINGVLRQFQRQQE 130 (429)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhhHHHHHHHHHHhhh
Confidence 999999988899999999999988653
No 6
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=99.89 E-value=7e-24 Score=205.49 Aligned_cols=131 Identities=10% Similarity=-0.019 Sum_probs=114.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccCCCCCccchhhhhhhhcccCCCCCCcccchhhHHHhhhhhhH
Q 022136 91 GRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEE 170 (302)
Q Consensus 91 ~~~~~R~~ARe~Avq~LYq~e~~g~~~~e~l~~~l~~~~~~~~e~d~~~l~e~~~~~~g~~~~~~~~~ee~~~l~~~~~~ 170 (302)
+|+++++.+|+.|+++||+++.+|...+.++..++... .
T Consensus 5 ~~~~~~~~~R~~A~~~L~~v~~~~~~~~~~l~~~~~~~------------------~----------------------- 43 (450)
T 2yxl_A 5 KKKLSIPPKGIRAIIEAIRLGEIIKPSQYAKREAFKKH------------------D----------------------- 43 (450)
T ss_dssp -CCBCCCHHHHHHHHHHHHHTTTSSSTHHHHHHHHHHT------------------T-----------------------
T ss_pred ccccCcchHHHHHHHHHHHHHhcCCcHHHHHHHHHHhc------------------c-----------------------
Confidence 44456778999999999999998888888877665410 0
Q ss_pred HHHHHHhhhcCCCcccccH-HHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCCCCCcchhHHHHHHHHHHHhhhccCCCh
Q 022136 171 ESAIEAEVLSAPPKLVYSK-LLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVVGTRH 249 (302)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~~-~Drafa~eLV~GVlr~~~~LD~iI~~~L~k~W~leRL~~vLDRaILRlAlyELl~~diP~ 249 (302)
++. .|++|+++||+||+||+..||++|+.+++ + ++++++++ +++|||+|+|||+| ++|+
T Consensus 44 ----------------l~~~~dr~~~~~lv~gvlr~~~~ld~~i~~~~~-~-~~~~~~~~-~~~iLrla~yell~-~ip~ 103 (450)
T 2yxl_A 44 ----------------VEEAWLNRVLTMIFYDIMKKQGLIDKVIKEIVG-V-TPLILDPW-LRAALRVAVDIALF-HDPS 103 (450)
T ss_dssp ----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-S-CGGGSCHH-HHHHHHHHHHHHHH-SCBC
T ss_pred ----------------CCcHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc-C-ChhhcCHH-HHHHHHHHHHHHhc-CCCc
Confidence 123 68999999999999999999999999994 3 88999999 79999999999999 9999
Q ss_pred hhHHH----HHHHHHHhhCCCCCCCchhHHHhHHHhh
Q 022136 250 QIVIN----EAVDLAKRFCDGAAPRIINGCLRTFVRN 282 (302)
Q Consensus 250 ~VaIN----EAVELAKky~~~~s~gFVNAVLrkI~R~ 282 (302)
+++|| |||++||+|+.+.+++|||||||++.+.
T Consensus 104 ~~ain~~~~eaVelak~~~~~~~~~fvNgvL~~~~r~ 140 (450)
T 2yxl_A 104 SQTIKNLRWKASDFISSRTHPYVGMYFWDLLDKIFEY 140 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTC
T ss_pred hHHhccccHHHHHHHHhccccccccchHHHHHHHhhc
Confidence 99999 9999999999888899999999999886
No 7
>1q8c_A Hypothetical protein Mg027; structural genomics, NUSB, GI 3 BSGC structure funded by NIH, protein structure initiative; 2.00A {Mycoplasma genitalium} SCOP: a.79.1.2
Probab=63.57 E-value=26 Score=29.20 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=42.7
Q ss_pred CCcchhHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHhhCCCCCCCchhHHHhHH
Q 022136 224 QPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTF 279 (302)
Q Consensus 224 eRL~~vLDRaILRlAlyELl~~diP~~VaINEAVELAKky~~~~s~gFVNAVLrkI 279 (302)
.+++.. ..++...|+.|-.-..+.....|+||+-+-..|+.....+=.+|+||++
T Consensus 96 kkidll-t~avilcalseq~a~~tdkplliseallimdhysq~~ekkqthalldkl 150 (151)
T 1q8c_A 96 KKIDLL-TTAVVLCALSEQKAHNTDKPLLISEALLIMDHYSQGAEKKQTHALLDKL 150 (151)
T ss_dssp --CCHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCCCTTSCSCTTTSCC
T ss_pred chhhHH-HHHHHHHHhhHHHhhcCCCchhHHHHHHHHHHhhhchhHHHHHHHHHhh
Confidence 345665 5777888888876667888899999999999998777777778888764
No 8
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=19.30 E-value=1.1e+02 Score=24.98 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhhccC-CChhhHHHHHHHHHHhhCC-CCCCCchhHHHhHH
Q 022136 231 ELSILHLAMSEITVVG-TRHQIVINEAVDLAKRFCD-GAAPRIINGCLRTF 279 (302)
Q Consensus 231 DRaILRlAlyELl~~d-iP~~VaINEAVELAKky~~-~~s~gFVNAVLrkI 279 (302)
|..-+|-|+-.|.-.| ||...||.-|+..|++..+ .-+.+|+-||=.+.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 4456899999988888 9999999999999998754 22445555555443
No 9
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=15.74 E-value=87 Score=22.57 Aligned_cols=32 Identities=16% Similarity=0.056 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHhhCCCCCCCchhHHHhHHHhh
Q 022136 250 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 282 (302)
Q Consensus 250 ~VaINEAVELAKky~~~~s~gFVNAVLrkI~R~ 282 (302)
.-+|++|++.|-..+ ..+.++|++||.+=.+.
T Consensus 37 ~elI~~A~~~a~~~~-~~s~~Yi~~Il~~W~~~ 68 (78)
T 2zc2_A 37 PDLVRSALREAVFNG-KTNWNYIQAILRNWRHE 68 (78)
T ss_dssp HHHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 457788888886443 45689999999987654
No 10
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=13.63 E-value=96 Score=22.93 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHhhCCCCCCCchhHHHhHHHhh
Q 022136 250 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 282 (302)
Q Consensus 250 ~VaINEAVELAKky~~~~s~gFVNAVLrkI~R~ 282 (302)
.-+|-+|++.|..-+ ..+.++|++||.+=.+.
T Consensus 42 ~elI~~A~~~av~~~-~~~~~Yi~~IL~~W~~~ 73 (83)
T 2i5u_A 42 EQLIVKAIEIAIDAN-ARNYNYINAILKDWEQR 73 (83)
T ss_dssp HHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 346667777776554 34678999999987653
Done!