BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>022138
MASLAQAPSAMSTVGVLWTLPRSMRLVNFKTSHAPTDDADYKILNKNSNIFETLSSDNTA
EAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIAS
LLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLL
MLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRV
LQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASA
DG

High Scoring Gene Products

Symbol, full name Information P value
AT3G60590 protein from Arabidopsis thaliana 2.4e-92
AT5G63040 protein from Arabidopsis thaliana 4.5e-08
AT1G48460 protein from Arabidopsis thaliana 8.0e-05

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  022138
        (302 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2103326 - symbol:AT3G60590 species:3702 "Arabi...   920  2.4e-92   1
TAIR|locus:2166330 - symbol:AT5G63040 "AT5G63040" species...   150  4.5e-08   1
TAIR|locus:2198070 - symbol:AT1G48460 "AT1G48460" species...   121  8.0e-05   1


>TAIR|locus:2103326 [details] [associations]
            symbol:AT3G60590 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009706 "chloroplast
            inner membrane" evidence=IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009536
            "plastid" evidence=IDA] EMBL:CP002686 GO:GO:0009706 IPI:IPI00528384
            RefSeq:NP_974468.1 UniGene:At.19770 PRIDE:F4JBW0
            EnsemblPlants:AT3G60590.3 GeneID:825230 KEGG:ath:AT3G60590
            OMA:WFAGFTA PhylomeDB:F4JBW0 ArrayExpress:F4JBW0 Uniprot:F4JBW0
        Length = 404

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 168/270 (62%), Positives = 213/270 (78%)

Query:    33 HAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLG 92
             HA  ++A   +L+K +N+FE++ S++  E    K +    A  +   Q+Q LKWP+WLLG
Sbjct:   136 HASAEEAADIVLDKTANVFESIVSESAEEE---KVD--MSAQQRTNSQVQVLKWPIWLLG 190

Query:    93 PCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTT 152
             P +LL +GM PTLWLP+SS+FLG N+ SLLSLIGLDCIFN+GATLFLLMADSCAR K+ +
Sbjct:   191 PSVLLTSGMAPTLWLPLSSVFLGSNVVSLLSLIGLDCIFNLGATLFLLMADSCARPKDPS 250

Query:   153 RACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFL---QPQLPFIPFAVLLGPYLLL 209
             ++CNSKPPFSYKFWNM +   GF++P+L+LFGSQ G L   QPQ+PF+  AV+L PY +L
Sbjct:   251 QSCNSKPPFSYKFWNMFSLIIGFLVPMLLLFGSQSGLLASLQPQIPFLSSAVILFPYFIL 310

Query:   210 LSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCW 269
             L++Q LTE+LTWHWQSPVWLVTPVVYE+YR+LQLMRGL L AE++AP W+VH +RGLV W
Sbjct:   311 LAVQTLTEILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAPVWVVHMLRGLVSW 370

Query:   270 WILILGVQLMRVAWFAGFTSQARRQQSPAS 299
             W+LILG+QLMRVAWFAGF S+    Q P S
Sbjct:   371 WVLILGMQLMRVAWFAGFASRTTTGQQPQS 400


>TAIR|locus:2166330 [details] [associations]
            symbol:AT5G63040 "AT5G63040" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] EMBL:CP002688 GO:GO:0009507 EMBL:BT024743
            IPI:IPI00521354 RefSeq:NP_568963.1 UniGene:At.29017 PRIDE:Q29Q13
            EnsemblPlants:AT5G63040.1 GeneID:836424 KEGG:ath:AT5G63040
            TAIR:At5g63040 OMA:ISIWSIS Genevestigator:Q3E868 Uniprot:Q29Q13
        Length = 366

 Score = 150 (57.9 bits), Expect = 4.5e-08, P = 4.5e-08
 Identities = 56/228 (24%), Positives = 98/228 (42%)

Query:    31 TSHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWL 90
             T   P DD      N+N      +S  N    P  KTE++      P  Q  + +  +WL
Sbjct:   102 TEATPRDDDSTIQYNRNDGKPGFISFYN----PRNKTEDIIIP---PETQSPWGRL-LWL 153

Query:    91 LGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARS 148
             +GP +L+ + ++P ++L   +S++F    +   L L   + +F  G   FLL+ D   + 
Sbjct:   154 IGPAVLVSSFILPPVYLRRIVSAVFEDSLLTDFLILFFTEALFYCGVAAFLLIIDRSRKG 213

Query:   149 KNTTRACNSKPP-FSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFA-VLLGPY 206
                       P     +  ++       +IP++ +     GF+ P     P A   L PY
Sbjct:   214 SGKVPQNRINPSQLGQRISSVATLVLSLMIPMVTM-----GFVWPWTG--PAASATLAPY 266

Query:   207 LLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELS 254
             L+ + +Q   E    +  SP   + P++++ YR+ QL R  +L   LS
Sbjct:   267 LVGIVVQFAFEQYARYRNSPSSPIIPIIFQVYRLHQLNRAAQLVTALS 314


>TAIR|locus:2198070 [details] [associations]
            symbol:AT1G48460 "AT1G48460" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009536 "plastid" evidence=IDA] EMBL:CP002684 GO:GO:0009941
            EMBL:BT020308 EMBL:BT020516 IPI:IPI00533239 RefSeq:NP_175279.1
            UniGene:At.38414 STRING:Q5PNY9 PaxDb:Q5PNY9 PRIDE:Q5PNY9
            EnsemblPlants:AT1G48460.1 GeneID:841267 KEGG:ath:AT1G48460
            TAIR:At1g48460 eggNOG:NOG270538 InParanoid:Q5PNY9 OMA:RGSSCWP
            PhylomeDB:Q5PNY9 ProtClustDB:CLSN2682225 Genevestigator:Q5PNY9
            Uniprot:Q5PNY9
        Length = 340

 Score = 121 (47.7 bits), Expect = 8.0e-05, P = 8.0e-05
 Identities = 51/241 (21%), Positives = 99/241 (41%)

Query:    16 VLWTLPRSMRLVNFKTSHAPTDDADYKILNKNSNIF--ETLSSDNTAEAPATKTEEVTDA 73
             +LW  P+  R V    S + +D    K  +  SN    E     + + +    T ++ + 
Sbjct:    47 LLWNKPQLSR-VRVACSSSQSDSRPEKKQSDKSNYARAELFRGKSGSVSFNGLTHQLVEE 105

Query:    74 NNQPLVQLQFLKWP-MWLLGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCI 130
             +       Q  K   +W+L P +L+ + ++P  +L   I + F    +A +++    + +
Sbjct:   106 SKLVSAPFQEEKGSFLWVLAPVVLISSLILPQFFLSGIIEATFKNDTVAEIVTSFCFETV 165

Query:   131 FNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQ---K 187
             F  G  +FL + D   R             FS K W ++    G++    +  G +    
Sbjct:   166 FYAGLAIFLSVTDRVQRPYLD---------FSSKRWGLITGLRGYLTSAFLTMGLKVVVP 216

Query:   188 GF-LQPQLPFIPFAVLLG--PYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLM 244
              F +    P +    L+   P+L+  ++Q + E       S  W + P+V+E YR+ Q+ 
Sbjct:   217 VFAVYMTWPALGIDALIAVLPFLVGCAVQRVFEARLERRGSSCWPIVPIVFEVYRLYQVT 276

Query:   245 R 245
             R
Sbjct:   277 R 277


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.438    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      302       302   0.00097  115 3  11 22  0.47    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  620 (66 KB)
  Total size of DFA:  225 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.80u 0.12s 24.92t   Elapsed:  00:00:01
  Total cpu time:  24.80u 0.12s 24.92t   Elapsed:  00:00:01
  Start:  Sat May 11 07:35:30 2013   End:  Sat May 11 07:35:31 2013

Back to top