BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022138
         (302 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P44225|VG29_HAEIN Mu-like prophage FluMu protein gp29 OS=Haemophilus influenzae
           (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1501
           PE=4 SV=1
          Length = 520

 Score = 36.2 bits (82), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 222 HWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCW 269
           HW+ P W +TP    +   L+L  G   GAE+    W+ H  R    +
Sbjct: 158 HWRDPAWFMTPAYQRN--SLRLRDGTPEGAEMQQFGWVKHVARAKTGY 203


>sp|Q9ULW8|PADI3_HUMAN Protein-arginine deiminase type-3 OS=Homo sapiens GN=PADI3 PE=1
           SV=2
          Length = 664

 Score = 32.7 bits (73), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 8/78 (10%)

Query: 95  ILLGTGM-VPTLWLPI--SSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNT 151
           ++LG  + +P  + PI      L   + SLL  +GL C F    T + ++        N 
Sbjct: 591 LVLGKHLGIPKPFGPIINGCCCLEEKVRSLLEPLGLHCTFIDDFTPYHMLHGEVHCGTNV 650

Query: 152 TRACNSKPPFSYKFWNMV 169
            R      PFS+K+WNMV
Sbjct: 651 CRK-----PFSFKWWNMV 663


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.136    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,043,954
Number of Sequences: 539616
Number of extensions: 4388162
Number of successful extensions: 12120
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 12117
Number of HSP's gapped (non-prelim): 5
length of query: 302
length of database: 191,569,459
effective HSP length: 117
effective length of query: 185
effective length of database: 128,434,387
effective search space: 23760361595
effective search space used: 23760361595
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)