Query 022138
Match_columns 302
No_of_seqs 38 out of 40
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 08:19:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07668 hypothetical protein; 38.9 1.8E+02 0.0038 27.9 8.2 48 161-213 169-216 (254)
2 KOG4686 Predicted sugar transp 34.5 1.7E+02 0.0036 30.2 7.5 144 81-266 259-428 (459)
3 PF15348 GEMIN8: Gemini of Caj 26.9 38 0.00083 31.5 1.6 24 210-233 184-207 (209)
4 PF06643 DUF1158: Protein of u 26.4 71 0.0015 26.1 2.9 21 265-285 53-76 (82)
5 COG4858 Uncharacterized membra 25.8 1.4E+02 0.003 28.4 5.0 104 83-199 91-198 (226)
6 PF09973 DUF2208: Predicted me 25.2 92 0.002 29.5 3.9 107 48-167 62-170 (233)
7 KOG3882 Tetraspanin family int 23.5 4.5E+02 0.0097 23.3 7.7 89 123-221 12-100 (237)
8 KOG2694 Putative zinc transpor 23.4 1.9E+02 0.004 29.0 5.6 67 86-152 68-136 (361)
9 PF11137 DUF2909: Protein of u 22.7 1.7E+02 0.0038 22.6 4.3 57 121-190 4-60 (63)
10 PF12794 MscS_TM: Mechanosensi 21.0 2E+02 0.0044 27.9 5.4 21 81-101 126-146 (340)
No 1
>PRK07668 hypothetical protein; Validated
Probab=38.91 E-value=1.8e+02 Score=27.91 Aligned_cols=48 Identities=13% Similarity=0.007 Sum_probs=27.5
Q ss_pred cceeeehhhhhhhhhhHhHHHhhhcccCcccCCCCChhHHHHHHHHHHHHHHH
Q 022138 161 FSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQ 213 (302)
Q Consensus 161 ~~yr~w~~~a~vlG~viPlv~mfg~~~G~~wP~l~~~a~~vaL~PYLvgL~VQ 213 (302)
.-|+....-..++|.++=++++.+..+-.-|. ..++...|..+++..+
T Consensus 169 ~~~~ls~~qs~il~~~~~i~~~~~~~~~~~~~-----~~l~l~~p~~i~~~f~ 216 (254)
T PRK07668 169 PMLQFTQMQSYILAGLIFLITVIINIYFLGWF-----GLLYLIIPLSIMFLFK 216 (254)
T ss_pred eEEEecchHHHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHH
Confidence 55666656666777666665555333333332 3446777777776543
No 2
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=34.46 E-value=1.7e+02 Score=30.18 Aligned_cols=144 Identities=17% Similarity=0.316 Sum_probs=81.5
Q ss_pred chhhhhhhHhhh-hHHhhhhccccccccc---------hhhhcCCccHHHHHHHHhhhHHHHHHHHHHHHhhhccccccC
Q 022138 81 LQFLKWPMWLLG-PCILLGTGMVPTLWLP---------ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKN 150 (302)
Q Consensus 81 ~q~~k~~lWLlG-P~vLvaS~i~P~l~Lp---------issif~~~~la~lLsLf~~ealFyiGatlFLlmaD~~~Rp~~ 150 (302)
...+|-|+|++- =+++-.-.++|-.-+. +|+.-.++. -+.+-.+. -.--.+|=.+.|+-
T Consensus 259 v~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i-~s~vy~Is-----av~spvfg~i~Dk~----- 327 (459)
T KOG4686|consen 259 VNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNI-LSTVYGIS-----AVLSPVFGAISDKY----- 327 (459)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccch-hhhhhhhh-----hhhhhhHHHhHhhh-----
Confidence 456788999864 3455555555544443 555544433 12111111 11225667778854
Q ss_pred ccccCCCCCCcceeeehhhhhhhhhhHhHHHhhhcccCcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCceeee
Q 022138 151 TTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLV 230 (302)
Q Consensus 151 ~~~s~~~~~P~~yr~w~~~a~vlG~viPlv~mfg~~~G~~wP~l~~~a~~vaL~PYLvgL~VQi~~E~lt~~~kSpvWp~ 230 (302)
|+|.|.+.+-.+-.++ .+.|. .+ ..+-||..++..-..+-+++- +-||+
T Consensus 328 -----------G~n~~wv~~a~~~tl~-------~H~~l--------~F-t~lsPy~~m~~lGLsysllAc----slWP~ 376 (459)
T KOG4686|consen 328 -----------GFNLWWVASACILTLL-------GHSGL--------FF-TFLSPYTSMTFLGLSYSLLAC----SLWPC 376 (459)
T ss_pred -----------cceehhHHHHHHHHHH-------HhhhH--------Hh-hhccHHHHHHHHhhhHHHHHH----HHhhh
Confidence 4466666553322222 12222 12 577899988888888888882 35999
Q ss_pred eeeee------ehhHHHHhhhhhhh----------hcccccchHHHHHHHHH
Q 022138 231 TPVVY------ESYRVLQLMRGLKL----------GAELSAPAWIVHTVRGL 266 (302)
Q Consensus 231 VPiIy------evYRl~QL~RaaqL----------~ae~sa~~wv~~q~lGl 266 (302)
||.+- ..|-+.|-..-+-| ++..+...|+..-+.+.
T Consensus 377 va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~ 428 (459)
T KOG4686|consen 377 VASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII 428 (459)
T ss_pred hhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence 99875 46777776554444 34556667775555543
No 3
>PF15348 GEMIN8: Gemini of Cajal bodies-associated protein 8
Probab=26.85 E-value=38 Score=31.45 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhcCCceeeeeee
Q 022138 210 LSIQILTEMLTWHWQSPVWLVTPV 233 (302)
Q Consensus 210 L~VQi~~E~lt~~~kSpvWp~VPi 233 (302)
-++|+-|++..+..+..-||+||.
T Consensus 184 aalql~fd~~~D~~~P~~WP~IPL 207 (209)
T PF15348_consen 184 AALQLSFDKHCDRKQPKYWPVIPL 207 (209)
T ss_pred HHHHHHHHhhhcccCCCCCCCCCC
Confidence 468999999999999999999996
No 4
>PF06643 DUF1158: Protein of unknown function (DUF1158); InterPro: IPR010590 This family consists of several enterobacterial YbdJ proteins. The function of this family is unknown
Probab=26.38 E-value=71 Score=26.14 Aligned_cols=21 Identities=33% Similarity=0.906 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHH---HHHHHHHhh
Q 022138 265 GLVCWWILILGV---QLMRVAWFA 285 (302)
Q Consensus 265 Glvc~WsL~lg~---fLMr~aW~~ 285 (302)
-+.|+|-|.||. +..|+.|--
T Consensus 53 l~FClWFLlLGaiEy~viRfiwrR 76 (82)
T PF06643_consen 53 LVFCLWFLLLGAIEYFVIRFIWRR 76 (82)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 368999999985 788998854
No 5
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=25.78 E-value=1.4e+02 Score=28.44 Aligned_cols=104 Identities=23% Similarity=0.377 Sum_probs=53.0
Q ss_pred hhhhhhHhhhhHHhhhhccccccccc-hhhhcCC-ccHHHHHHHHhhhHHHHHHHHHHHHhhhccccccCccccCCCCCC
Q 022138 83 FLKWPMWLLGPCILLGTGMVPTLWLP-ISSIFLG-PNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPP 160 (302)
Q Consensus 83 ~~k~~lWLlGP~vLvaS~i~P~l~Lp-issif~~-~~la~lLsLf~~ealFyiGatlFLlmaD~~~Rp~~~~~s~~~~~P 160 (302)
+-+|.||+=+-...+..+. .+. +.++|.. -...++.+++.+-+ .|-..+..|=--.-|++. .++..|
T Consensus 91 tdp~lm~lDssLl~lg~~a----Llsgitaff~~nA~~~GlItlll~a~---vgGfamy~my~y~yr~~a----d~sqr~ 159 (226)
T COG4858 91 TDPWLMWLDSSLLFLGAMA----LLSGITAFFQKNAQVYGLITLLLTAV---VGGFAMYIMYYYAYRMRA----DNSQRP 159 (226)
T ss_pred CCceEEEecccHHHHHHHH----HHHHHHHHHhcCCcchhHHHHHHHHH---hhhHHHHHHHHHHHHhhc----ccccCC
Confidence 3468888754433332221 122 6666654 44556666655432 344445555444555554 245567
Q ss_pred cceeeehhhhhhhhhhHhHHHhh--hcccCcccCCCCChhH
Q 022138 161 FSYKFWNMVANTTGFIIPLLMLF--GSQKGFLQPQLPFIPF 199 (302)
Q Consensus 161 ~~yr~w~~~a~vlG~viPlv~mf--g~~~G~~wP~l~~~a~ 199 (302)
+++|+-.++ .++..+=+++|+ +..--.+=|+++|++.
T Consensus 160 ~~~K~~lv~--~~sm~lWi~v~i~t~~lPtslN~~L~pi~l 198 (226)
T COG4858 160 GTWKYLLVA--VLSMLLWIAVMIATVFLPTSLNPQLPPIAL 198 (226)
T ss_pred chHHHHHHH--HHHHHHHHHHHHHHhhCCCcCCcCCchHHH
Confidence 666654333 333333333333 3333456788998885
No 6
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=25.22 E-value=92 Score=29.51 Aligned_cols=107 Identities=19% Similarity=0.153 Sum_probs=53.3
Q ss_pred cceeeeccCCCCCCCCCCCccchhhccCcccccchhhhh-hhHhhhhHHhhhhccccccccchhhhcCCccHHHHHHHHh
Q 022138 48 SNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKW-PMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIG 126 (302)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~q~~k~-~lWLlGP~vLvaS~i~P~l~Lpissif~~~~la~lLsLf~ 126 (302)
..++| ||.+.+-..+|||.++|=++ |.-+- ..=+.-|++++...++=+...|+-+..++....+.+.-|.
T Consensus 62 ~~L~e----Ek~~~kl~~kD~el~~E~~~-----~~k~~~~~ll~~~i~ii~~~~~~~~v~p~~~~~~~~~~~~~~~rFl 132 (233)
T PF09973_consen 62 RPLFE----EKNANKLMEKDKELQKEYKK-----QMKASMMNLLILPIYIILFFLLYPYVPPFISSILGPSSNELLARFL 132 (233)
T ss_pred Ccccc----cccHHHHHHhCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcccccHHHHHHH
Confidence 55777 55555555788888776522 22222 2223445555555443333336444666666666665555
Q ss_pred hhHHHHHHHHHHHH-hhhccccccCccccCCCCCCcceeeeh
Q 022138 127 LDCIFNIGATLFLL-MADSCARSKNTTRACNSKPPFSYKFWN 167 (302)
Q Consensus 127 ~ealFyiGatlFLl-maD~~~Rp~~~~~s~~~~~P~~yr~w~ 167 (302)
.-.+.|-+..++.. +.-+.-|..++. --.|.+|+++.
T Consensus 133 ~yl~~Fe~~f~i~~~l~~~~~r~~~~~----~~i~~~y~Vte 170 (233)
T PF09973_consen 133 VYLAYFEIFFAISMFLYRRIMRMSKMM----PMIPRSYKVTE 170 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc----cccccceEEEe
Confidence 55444444443333 222222332221 12589999984
No 7
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=23.45 E-value=4.5e+02 Score=23.33 Aligned_cols=89 Identities=19% Similarity=0.191 Sum_probs=54.6
Q ss_pred HHHhhhHHHHHHHHHHHHhhhccccccCccccCCCCCCcceeeehhhhhhhhhhHhHHHhhhcccCcccCCCCChhHHHH
Q 022138 123 SLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVL 202 (302)
Q Consensus 123 sLf~~ealFyiGatlFLlmaD~~~Rp~~~~~s~~~~~P~~yr~w~~~a~vlG~viPlv~mfg~~~G~~wP~l~~~a~~va 202 (302)
.+|.+|.+|.+.-.+++.+.=+..-.+....... +..+........++|.++=++.++|-. |..+... -+
T Consensus 12 ~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~---~~~~~~~~~ili~~G~v~~~v~flGc~-Ga~~es~------~l 81 (237)
T KOG3882|consen 12 LLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLL---ESDFLVPAYILIAVGGVVFLVGFLGCC-GALRESR------CL 81 (237)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheeEeccchhhcc---ccchhcchhhhhhhhHHHHHHHHhhhh-hhHhhhH------HH
Confidence 4788899998887777777666555444443322 111222334446667777777776321 2322222 48
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 022138 203 LGPYLLLLSIQILTEMLTW 221 (302)
Q Consensus 203 L~PYLvgL~VQi~~E~lt~ 221 (302)
|..|.+.+.+-++.|...-
T Consensus 82 L~~y~~~l~l~~i~e~~~~ 100 (237)
T KOG3882|consen 82 LLSYFILLLLLFIAELAAG 100 (237)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999999998888764
No 8
>KOG2694 consensus Putative zinc transporter [Inorganic ion transport and metabolism]
Probab=23.42 E-value=1.9e+02 Score=28.98 Aligned_cols=67 Identities=22% Similarity=0.310 Sum_probs=50.8
Q ss_pred hhhHhhhhHHhhhhccccccccc--hhhhcCCccHHHHHHHHhhhHHHHHHHHHHHHhhhccccccCcc
Q 022138 86 WPMWLLGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTT 152 (302)
Q Consensus 86 ~~lWLlGP~vLvaS~i~P~l~Lp--issif~~~~la~lLsLf~~ealFyiGatlFLlmaD~~~Rp~~~~ 152 (302)
|..-|+|-++...|+++|.+.+| +-..++++-=.-.|-+...=++=-+-..+||++.-.+|...+++
T Consensus 68 Wi~sLlGs~~vglsGifPl~~iP~e~~~~l~s~ag~~rL~~LLsFAiGgLLgdVFLHLLPEAwe~~n~~ 136 (361)
T KOG2694|consen 68 WIYSLLGSSLVGLSGIFPLFLIPAEIHVLLSSSAGQRRLNLLLSFAIGGLLGDVFLHLLPEAWESNNQD 136 (361)
T ss_pred hHHHHhhhHHHhhcccceeeeechhhhhhccCchhHHHHHHHHHHHHhhHHHHHHHHhCHHHHhccCCC
Confidence 88889999999999999999999 66667776555444444443443444689999999999877666
No 9
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=22.74 E-value=1.7e+02 Score=22.64 Aligned_cols=57 Identities=23% Similarity=0.251 Sum_probs=34.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhccccccCccccCCCCCCcceeeehhhhhhhhhhHhHHHhhhcccCcc
Q 022138 121 LLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFL 190 (302)
Q Consensus 121 lLsLf~~ealFyiGatlFLlmaD~~~Rp~~~~~s~~~~~P~~yr~w~~~a~vlG~viPlv~mfg~~~G~~ 190 (302)
++.+.+.=.++++|-++|.++-|+. + + +.-.. +.+.=..++.++=++.++|.+-|..
T Consensus 4 ~iv~lll~ii~sL~saL~~l~kd~~-~------~---~rm~~---~L~~RV~lS~~l~~lil~~~~~G~i 60 (63)
T PF11137_consen 4 LIVLLLLAIIASLFSALFFLVKDKG-S------S---KRMVK---ALGRRVGLSALLFLLILIALYTGWI 60 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCC-C------C---chHHH---HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4556667789999999999999943 1 1 11000 1122244555555566667777877
No 10
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=21.00 E-value=2e+02 Score=27.86 Aligned_cols=21 Identities=24% Similarity=0.668 Sum_probs=17.9
Q ss_pred chhhhhhhHhhhhHHhhhhcc
Q 022138 81 LQFLKWPMWLLGPCILLGTGM 101 (302)
Q Consensus 81 ~q~~k~~lWLlGP~vLvaS~i 101 (302)
.+.+||..|.+.|.+.+..+.
T Consensus 126 r~~l~~~~~~~~pl~~~~~~~ 146 (340)
T PF12794_consen 126 RRQLRWLIWVLVPLLFISIFA 146 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 367899999999999988765
Done!