Query 022138
Match_columns 302
No_of_seqs 38 out of 40
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 14:34:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_F Photosystem I reaction 10.6 1.3E+02 0.0043 27.6 2.3 27 131-157 160-189 (231)
2 3lw5_F Photosystem I reaction 9.6 2E+02 0.007 24.9 3.1 22 134-155 86-110 (154)
3 4iao_C Regulatory protein SIR4 7.5 1.1E+02 0.0038 26.6 0.6 58 19-86 8-65 (159)
4 2l8s_A Integrin alpha-1; trans 5.4 4.7E+02 0.016 18.9 2.9 21 278-298 26-46 (54)
5 2l5b_A Activator of apoptosis 4.9 67 0.0023 21.2 -1.7 20 189-208 7-26 (32)
6 1wrg_A LH-1, light-harvesting 4.2 1E+03 0.034 17.2 3.9 33 120-152 18-50 (55)
7 2v2f_A Penicillin binding prot 3.9 3.9E+02 0.013 15.5 1.3 19 39-57 5-23 (26)
8 3s8f_C Cytochrome C oxidase po 3.8 9.9E+02 0.034 15.8 3.3 25 256-280 7-33 (34)
9 3d31_C Sulfate/molybdate ABC t 3.7 2.4E+02 0.0081 24.3 0.3 45 61-107 14-59 (295)
10 2kv5_A FST, putative uncharact 3.4 1.1E+03 0.037 15.6 3.3 21 201-222 7-27 (33)
No 1
>2wsc_F Photosystem I reaction center subunit III, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_F* 2wsf_F*
Probab=10.60 E-value=1.3e+02 Score=27.64 Aligned_cols=27 Identities=22% Similarity=0.156 Sum_probs=19.8
Q ss_pred HHHHHHHHHHh---hhccccccCccccCCC
Q 022138 131 FNIGATLFLLM---ADSCARSKNTTRACNS 157 (302)
Q Consensus 131 FyiGatlFLlm---aD~~~Rp~~~~~s~~~ 157 (302)
|.+=.-+||++ +.|++|.|.+......
T Consensus 160 F~IPgllFLYIAGwIGW~GR~YL~av~~~k 189 (231)
T 2wsc_F 160 FITPGILFLYIAGWIGWVGRSYLIAIRDEK 189 (231)
T ss_dssp TSHHHHHHHHHTTTTTTTTTTTTTTCSCSS
T ss_pred eeechhhHHHHhcccccccHHHHHHhccCC
Confidence 55666789999 5569999998855433
No 2
>3lw5_F Photosystem I reaction center subunit III, chloro; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_F*
Probab=9.64 E-value=2e+02 Score=24.86 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=16.5
Q ss_pred HHHHHHHhhhc---cccccCccccC
Q 022138 134 GATLFLLMADS---CARSKNTTRAC 155 (302)
Q Consensus 134 GatlFLlmaD~---~~Rp~~~~~s~ 155 (302)
=..+||++|.+ ++|.|.+....
T Consensus 86 Pg~lFLYIAGwIGW~GRsYL~a~~~ 110 (154)
T 3lw5_F 86 PGILFLYIAGWIGWVGRSYLIAIRD 110 (154)
T ss_dssp HHHHHHHHTTTTTTTTTTTTTTCSC
T ss_pred hhHHHHHHhhhhhhhhHHHHHHHhc
Confidence 34679999876 89999887443
No 3
>4iao_C Regulatory protein SIR4; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=7.55 E-value=1.1e+02 Score=26.58 Aligned_cols=58 Identities=28% Similarity=0.342 Sum_probs=6.5
Q ss_pred eeccccceeecccccccCCcccccccccccceeeeccCCCCCCCCCCCccchhhccCcccccchhhhh
Q 022138 19 TLPRSMRLVNFKTSHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKW 86 (302)
Q Consensus 19 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~q~~k~ 86 (302)
.||-.|.| +|.+.-|++.+- +.+.+=.|.+.+.+..|+.++|+-|--.+++ |.|.-||
T Consensus 8 ~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~a~~~ 65 (159)
T 4iao_C 8 THPGKMEL-----VYVSDSDDSSSD-NDSLTDLESLSSGESNEIKVTNDLDTSAEKD----QIQAGKW 65 (159)
T ss_dssp CCTTBCEE-----CC-----------------------------------------------------
T ss_pred cCCCceEE-----EEEecCCccccc-ccchhhhhhhccCCCCceEEecccccccccc----hhhcccc
Confidence 56766665 577766664443 3335678999999999999998888766665 4555444
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=5.40 E-value=4.7e+02 Score=18.92 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=15.1
Q ss_pred HHHHHHhhhccccccccCCCC
Q 022138 278 LMRVAWFAGFTSQARRQQSPA 298 (302)
Q Consensus 278 LMr~aW~~g~~~~~~~~~~~~ 298 (302)
+.=+.|-.||-.|.++++...
T Consensus 26 ii~~LwK~GFFKR~~~~~~~~ 46 (54)
T 2l8s_A 26 LILALWKIGFFKRPLKKKMEK 46 (54)
T ss_dssp HHHHHHHHHHTTSCCSCCCCC
T ss_pred HHHHHHHcCcccCCCcchhhH
Confidence 344568889999998876544
No 5
>2l5b_A Activator of apoptosis harakiri; BCL-2, BH3-only, transmembrane domain; NMR {Synthetic}
Probab=4.89 E-value=67 Score=21.21 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=13.5
Q ss_pred cccCCCCChhHHHHHHHHHH
Q 022138 189 FLQPQLPFIPFAVLLGPYLL 208 (302)
Q Consensus 189 ~~wP~l~~~a~~vaL~PYLv 208 (302)
..|||++-++-.++|+-.|+
T Consensus 7 ~yw~wlcaaa~vaalaawll 26 (32)
T 2l5b_A 7 TYWPWLCAAAQVAALAAWLL 26 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 46888887666566666554
No 6
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=4.22 E-value=1e+03 Score=17.16 Aligned_cols=33 Identities=9% Similarity=0.006 Sum_probs=26.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhhccccccCcc
Q 022138 120 SLLSLIGLDCIFNIGATLFLLMADSCARSKNTT 152 (302)
Q Consensus 120 ~lLsLf~~ealFyiGatlFLlmaD~~~Rp~~~~ 152 (302)
+|=..|..-..+|.+++++-.+.-+.|||-.+-
T Consensus 18 EfH~~f~~~~~~F~~iAvvAH~L~~~wrPWl~g 50 (55)
T 1wrg_A 18 EFHKIFTSSILVFFGVAAFAHLLVWIWRPWVPG 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 445566667788999999999999999987654
No 7
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=3.95 E-value=3.9e+02 Score=15.52 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=12.9
Q ss_pred ccccccccccceeeeccCC
Q 022138 39 ADYKILNKNSNIFETLSSD 57 (302)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~ 57 (302)
.+..|.+++++++.++.++
T Consensus 5 ~ss~IYD~~g~~i~~lg~e 23 (26)
T 2v2f_A 5 TSSKIYDNKNQLIADLGSE 23 (26)
T ss_pred CCCEEEeCCCCEeeecccc
Confidence 3456777788888877543
No 8
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=3.77 E-value=9.9e+02 Score=15.75 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=17.0
Q ss_pred chHHHHHHHHH--HHHHHHHHHHHHHH
Q 022138 256 PAWIVHTVRGL--VCWWILILGVQLMR 280 (302)
Q Consensus 256 ~~wv~~q~lGl--vc~WsL~lg~fLMr 280 (302)
.+|....++|+ +..|..+++.|+-|
T Consensus 7 GTl~~V~ilg~~I~i~W~~vf~lFl~R 33 (34)
T 3s8f_C 7 GALAVILVLTLTILVFWLGVYAVFFAR 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceehHHHHHHHHHHHHHHHHHeeeecC
Confidence 35665555554 45688888888876
No 9
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=3.74 E-value=2.4e+02 Score=24.32 Aligned_cols=45 Identities=7% Similarity=-0.082 Sum_probs=11.2
Q ss_pred CCCCCCccchhhccCcccccchhhhhhhHhhhhHHhhhh-cccccccc
Q 022138 61 EAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGT-GMVPTLWL 107 (302)
Q Consensus 61 ~~~~~~~~~~~e~~~~~~~~~q~~k~~lWLlGP~vLvaS-~i~P~l~L 107 (302)
|++.+..+|++..+++...... .+...++.|.++++. .++|-+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~P~~~~ 59 (295)
T 3d31_C 14 SGENLYFQGHMKAKNRKTRKFE--PLTFVFSFLLLVLFLFIFLTLSNM 59 (295)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCcccc--chHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555554444332222 223345667655433 34565554
No 10
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=3.44 E-value=1.1e+03 Score=15.64 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 022138 201 VLLGPYLLLLSIQILTEMLTWH 222 (302)
Q Consensus 201 vaL~PYLvgL~VQi~~E~lt~~ 222 (302)
..++|.++|+++-. ++.-+.+
T Consensus 7 ~IIaPivVGvvl~L-~d~WLn~ 27 (33)
T 2kv5_A 7 LVIAPIFVGLVLEM-ISRVLDE 27 (33)
T ss_dssp HHHHHHHHHHHHHH-HHHHTTC
T ss_pred HHHHHHHHHHHHHH-HHHHHcc
Confidence 57899999998764 4444443
Done!