Query 022139
Match_columns 302
No_of_seqs 217 out of 584
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 14:35:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 99.1 1.7E-10 5.8E-15 83.3 6.6 53 58-111 3-56 (58)
2 1n2d_C IQ2 and IQ3 motifs from 98.8 4.8E-09 1.6E-13 72.8 5.6 42 60-101 3-47 (48)
3 2dfs_A Myosin-5A; myosin-V, in 98.7 2.6E-08 8.9E-13 107.2 9.4 67 60-127 768-835 (1080)
4 2dfs_A Myosin-5A; myosin-V, in 98.7 2.4E-08 8.2E-13 107.5 7.8 67 58-125 814-881 (1080)
5 2l53_B CAM, voltage-gated sodi 98.0 3.1E-06 1.1E-10 55.3 2.9 24 57-80 3-26 (31)
6 1n2d_C IQ2 and IQ3 motifs from 97.9 1.8E-05 6.1E-10 54.6 5.8 42 83-125 4-45 (48)
7 2kxw_B Sodium channel protein 97.9 3.8E-06 1.3E-10 53.3 1.9 22 57-78 3-24 (27)
8 2ix7_C Myosin-5A; contractIle 97.4 0.00031 1E-08 50.2 5.6 41 83-126 6-46 (58)
9 1wdc_A Scallop myosin; calcium 97.3 0.00041 1.4E-08 50.7 5.7 41 60-100 6-50 (64)
10 2bl0_A Major plasmodial myosin 97.2 0.00041 1.4E-08 50.6 4.6 39 61-99 5-47 (63)
11 2bl0_A Major plasmodial myosin 96.9 0.0014 4.7E-08 47.8 5.5 42 84-125 6-47 (63)
12 1wdc_A Scallop myosin; calcium 96.9 0.0016 5.4E-08 47.6 5.8 42 84-125 8-49 (64)
13 1kk8_A Myosin heavy chain, str 96.9 0.00077 2.6E-08 71.2 5.3 42 60-101 779-824 (837)
14 3gn4_A Myosin-VI; unconvention 96.6 0.0019 6.5E-08 55.6 4.4 34 59-92 44-78 (148)
15 1i84_S Smooth muscle myosin he 95.8 0.0065 2.2E-07 65.8 4.9 40 61-100 793-836 (1184)
16 1kk8_A Myosin heavy chain, str 94.2 0.082 2.8E-06 55.9 7.4 42 84-125 781-822 (837)
17 4dck_A Sodium channel protein 93.1 0.059 2E-06 47.1 3.5 26 56-81 126-151 (168)
18 1i84_S Smooth muscle myosin he 91.8 0.27 9.4E-06 53.3 7.3 43 84-126 794-836 (1184)
19 1w7j_A Myosin VA; motor protei 91.1 0.12 4.1E-06 54.4 3.5 25 60-84 768-792 (795)
20 4anj_A Unconventional myosin-V 87.5 0.61 2.1E-05 50.6 5.7 42 59-101 774-816 (1052)
21 3gn4_A Myosin-VI; unconvention 73.8 4.6 0.00016 34.5 5.2 35 84-118 47-81 (148)
22 4anj_A Unconventional myosin-V 55.7 17 0.00058 39.5 6.5 43 81-126 773-815 (1052)
23 3dvk_B Voltage-dependent R-typ 41.0 11 0.00038 22.9 1.3 16 61-76 7-22 (23)
24 3bxl_B CAM, voltage-dependent 36.5 24 0.00084 21.9 2.3 18 61-78 3-20 (26)
25 2f3y_B Voltage-dependent L-typ 35.9 23 0.00078 22.0 2.1 18 62-79 4-21 (26)
26 2be6_D Voltage-dependent L-typ 34.0 31 0.0011 23.1 2.7 19 61-79 12-30 (37)
27 1w7j_A Myosin VA; motor protei 25.5 53 0.0018 34.6 4.1 17 109-125 769-785 (795)
28 1m46_B IQ4, IQ4 motif from MYO 23.1 65 0.0022 19.6 2.5 21 81-101 2-22 (26)
29 3dve_B Voltage-dependent N-typ 22.1 12 0.00042 22.7 -0.8 16 61-76 6-21 (23)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.09 E-value=1.7e-10 Score=83.28 Aligned_cols=53 Identities=23% Similarity=0.219 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHhhhh-hhhhhhhhhhhhHHHHHHHhhhhHHHHH
Q 022139 58 VEDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTW 111 (302)
Q Consensus 58 ree~AAV~IQsafRGylARr~lr~LK-giVrLQAlvRG~~VRrQa~~tlr~~~A~ 111 (302)
..+.|||.||+.||||++|+.|..++ +++.||+.+||+++|+.+.. ++..+++
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~-~r~~~aA 56 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKF-LRRTKAA 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCc
Confidence 46789999999999999999999886 89999999999999999854 4444443
No 2
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.83 E-value=4.8e-09 Score=72.80 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhhh---hhhhhhhhhhhhHHHHHH
Q 022139 60 DVAAIRIQTAFRAYKARKTFRRLK---GTIRLQGVSQRHSVQKQA 101 (302)
Q Consensus 60 e~AAV~IQsafRGylARr~lr~LK---giVrLQAlvRG~~VRrQa 101 (302)
..|||.||+.||||++|+.|..++ +++.+|+.+||+++|+.+
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 358999999999999999999664 788999999999999875
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.71 E-value=2.6e-08 Score=107.24 Aligned_cols=67 Identities=25% Similarity=0.249 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhhh-hhhhhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhh
Q 022139 60 DVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMVK 127 (302)
Q Consensus 60 e~AAV~IQsafRGylARr~lr~LK-giVrLQAlvRG~~VRrQa~~tlr~~~A~vrIQa~iRarr~R~s~ 127 (302)
..||+.||++||||++|+.|+.++ +++.||+.+||+++|+.+. .++...|++.||+.+|++.+|+.-
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~lr~~~AAi~IQs~~Rg~~~Rk~y 835 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYAT-FLRRTRAAIIIQKFQRMYVVRKRY 835 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhccc-ccccchhHHHHHHHHhhHHHHHHH
Confidence 579999999999999999999775 8899999999999999984 467788999999999999988743
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.67 E-value=2.4e-08 Score=107.50 Aligned_cols=67 Identities=25% Similarity=0.248 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHhhhh-hhhhhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhh
Q 022139 58 VEDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM 125 (302)
Q Consensus 58 ree~AAV~IQsafRGylARr~lr~LK-giVrLQAlvRG~~VRrQa~~tlr~~~A~vrIQa~iRarr~R~ 125 (302)
++..||+.||++||||++|+.|..++ +++.||+.+||+++|+.+.. ++...+++.||+.+|+..+|+
T Consensus 814 r~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~-lr~~~aav~IQ~~~Rg~l~R~ 881 (1080)
T 2dfs_A 814 RRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQM-MLREHKSIIIQKHVRGWLARV 881 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTHHHH
T ss_pred ccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777776554 56667777777777766643 233345555555555554443
No 5
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=98.01 E-value=3.1e-06 Score=55.27 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.7
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHh
Q 022139 57 PVEDVAAIRIQTAFRAYKARKTFR 80 (302)
Q Consensus 57 ~ree~AAV~IQsafRGylARr~lr 80 (302)
.+||.||+.||.|||+||.|+.+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 579999999999999999998765
No 6
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=97.93 E-value=1.8e-05 Score=54.60 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=36.4
Q ss_pred hhhhhhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhh
Q 022139 83 KGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM 125 (302)
Q Consensus 83 KgiVrLQAlvRG~~VRrQa~~tlr~~~A~vrIQa~iRarr~R~ 125 (302)
++++.||+.+||+++|+.+.. ++...+++.||+.+||..+|.
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~-~~~~~aai~IQ~~~Rg~~~Rk 45 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVND-EMKVNCATLLQAAYRGHSIRA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHH
Confidence 478999999999999999954 555679999999999998875
No 7
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=97.91 E-value=3.8e-06 Score=53.27 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=20.0
Q ss_pred chhHHHHHHHHHHhhhHHHHHH
Q 022139 57 PVEDVAAIRIQTAFRAYKARKT 78 (302)
Q Consensus 57 ~ree~AAV~IQsafRGylARr~ 78 (302)
.+||.||+.||.|||+||+|+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999999865
No 8
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=97.36 E-value=0.00031 Score=50.19 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=35.7
Q ss_pred hhhhhhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhh
Q 022139 83 KGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMV 126 (302)
Q Consensus 83 KgiVrLQAlvRG~~VRrQa~~tlr~~~A~vrIQa~iRarr~R~s 126 (302)
..++.||+.+||+++|+.+... ..+++.||+.+||..+|+.
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~~~~---r~aai~IQ~~~Rg~~aR~~ 46 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRYLCM---QRAAITVQRYVRGYQARCY 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999443 5799999999999998864
No 9
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.29 E-value=0.00041 Score=50.70 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhh---h-hhhhhhhhhhhhHHHHH
Q 022139 60 DVAAIRIQTAFRAYKARKTFRRL---K-GTIRLQGVSQRHSVQKQ 100 (302)
Q Consensus 60 e~AAV~IQsafRGylARr~lr~L---K-giVrLQAlvRG~~VRrQ 100 (302)
...++.||++.|||++|+.|..+ + ++..+|.-+|+++.++.
T Consensus 6 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 6 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34567777777777777777644 2 44456666666666553
No 10
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.17 E-value=0.00041 Score=50.62 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhhHHHHHHHhhh---h-hhhhhhhhhhhhHHHH
Q 022139 61 VAAIRIQTAFRAYKARKTFRRL---K-GTIRLQGVSQRHSVQK 99 (302)
Q Consensus 61 ~AAV~IQsafRGylARr~lr~L---K-giVrLQAlvRG~~VRr 99 (302)
..++.||++.|||++|+.|..+ + ++..+|.-+|+++.++
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr 47 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK 47 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455566666666666665533 1 3334455555554443
No 11
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.93 E-value=0.0014 Score=47.81 Aligned_cols=42 Identities=14% Similarity=-0.045 Sum_probs=37.6
Q ss_pred hhhhhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhh
Q 022139 84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM 125 (302)
Q Consensus 84 giVrLQAlvRG~~VRrQa~~tlr~~~A~vrIQa~iRarr~R~ 125 (302)
-++.||+.+||+++|+.+...+....|+..||.-+|+...++
T Consensus 6 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr 47 (63)
T 2bl0_A 6 IVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK 47 (63)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467899999999999999988888889999999999988765
No 12
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.92 E-value=0.0016 Score=47.56 Aligned_cols=42 Identities=14% Similarity=-0.047 Sum_probs=37.6
Q ss_pred hhhhhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhh
Q 022139 84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM 125 (302)
Q Consensus 84 giVrLQAlvRG~~VRrQa~~tlr~~~A~vrIQa~iRarr~R~ 125 (302)
-++.|||.+||+++|+.+...+....|+..||.-+|+....+
T Consensus 8 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~ 49 (64)
T 1wdc_A 8 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 577899999999999999988888889999999999987765
No 13
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.88 E-value=0.00077 Score=71.20 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhh----hhhhhhhhhhhhhHHHHHH
Q 022139 60 DVAAIRIQTAFRAYKARKTFRRL----KGTIRLQGVSQRHSVQKQA 101 (302)
Q Consensus 60 e~AAV~IQsafRGylARr~lr~L----KgiVrLQAlvRG~~VRrQa 101 (302)
..+|+.||+++|||++|+.|..+ .+++.+|..+||+++||..
T Consensus 779 ~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 779 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 35789999999999999999866 3678888888888888765
No 14
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=96.56 E-value=0.0019 Score=55.57 Aligned_cols=34 Identities=18% Similarity=0.488 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHhhhHHHHHHHh-hhhhhhhhhhhh
Q 022139 59 EDVAAIRIQTAFRAYKARKTFR-RLKGTIRLQGVS 92 (302)
Q Consensus 59 ee~AAV~IQsafRGylARr~lr-~LKgiVrLQAlv 92 (302)
...|+|.||+++||||+|+.++ .+.|++++.+|.
T Consensus 44 R~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4578999999999999999999 678888776654
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.81 E-value=0.0065 Score=65.79 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhhHHHHHHHhhh----hhhhhhhhhhhhhHHHHH
Q 022139 61 VAAIRIQTAFRAYKARKTFRRL----KGTIRLQGVSQRHSVQKQ 100 (302)
Q Consensus 61 ~AAV~IQsafRGylARr~lr~L----KgiVrLQAlvRG~~VRrQ 100 (302)
.+|+.||+++|||++|+.|..+ .+++.+|..+||++.|+.
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999999966 378899999999999975
No 16
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=94.16 E-value=0.082 Score=55.90 Aligned_cols=42 Identities=14% Similarity=-0.047 Sum_probs=36.9
Q ss_pred hhhhhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhh
Q 022139 84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM 125 (302)
Q Consensus 84 giVrLQAlvRG~~VRrQa~~tlr~~~A~vrIQa~iRarr~R~ 125 (302)
.++.||+.+||+++|+.+...+....|++.||..+|++..++
T Consensus 781 ~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r 822 (837)
T 1kk8_A 781 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 822 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567899999999999999776666789999999999988775
No 17
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=93.11 E-value=0.059 Score=47.06 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.7
Q ss_pred cchhHHHHHHHHHHhhhHHHHHHHhh
Q 022139 56 MPVEDVAAIRIQTAFRAYKARKTFRR 81 (302)
Q Consensus 56 ~~ree~AAV~IQsafRGylARr~lr~ 81 (302)
..+++.||+.||.|||.|+.|+.+..
T Consensus 126 ~~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 126 RKHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Confidence 36789999999999999999987764
No 18
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=91.78 E-value=0.27 Score=53.25 Aligned_cols=43 Identities=14% Similarity=-0.008 Sum_probs=37.3
Q ss_pred hhhhhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhh
Q 022139 84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMV 126 (302)
Q Consensus 84 giVrLQAlvRG~~VRrQa~~tlr~~~A~vrIQa~iRarr~R~s 126 (302)
.++.||+.+||+++|+.+...+....+++.||+.+|++..++.
T Consensus 794 ~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 794 VIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678999999999999998766667899999999999987653
No 19
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=91.12 E-value=0.12 Score=54.40 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhhhh
Q 022139 60 DVAAIRIQTAFRAYKARKTFRRLKG 84 (302)
Q Consensus 60 e~AAV~IQsafRGylARr~lr~LKg 84 (302)
..+|+.||+++|||++|+.|+.++.
T Consensus 768 ~~~~~~iQ~~~Rg~l~R~~~~~~r~ 792 (795)
T 1w7j_A 768 RAACIRIQKTIRGWLMRKKYMRMRR 792 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999998764
No 20
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=87.47 E-value=0.61 Score=50.58 Aligned_cols=42 Identities=7% Similarity=0.176 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhhhHHHHHHHhhhh-hhhhhhhhhhhhHHHHHH
Q 022139 59 EDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQA 101 (302)
Q Consensus 59 ee~AAV~IQsafRGylARr~lr~LK-giVrLQAlvRG~~VRrQa 101 (302)
.+.+|+.||. +|||++|+.|+.++ +++.+|.+-|+...|+..
T Consensus 774 ~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 774 PDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3567777775 79999999998775 677777777776655443
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=73.77 E-value=4.6 Score=34.55 Aligned_cols=35 Identities=11% Similarity=0.180 Sum_probs=24.0
Q ss_pred hhhhhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHH
Q 022139 84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEI 118 (302)
Q Consensus 84 giVrLQAlvRG~~VRrQa~~tlr~~~A~vrIQa~i 118 (302)
.++.+|..|||+++|+++..-+..+.-+..+...+
T Consensus 47 ~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~~~~ 81 (148)
T 3gn4_A 47 ACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLKKRL 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 46788999999999999976654444444444333
No 22
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=55.67 E-value=17 Score=39.51 Aligned_cols=43 Identities=2% Similarity=-0.220 Sum_probs=30.8
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhh
Q 022139 81 RLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMV 126 (302)
Q Consensus 81 ~LKgiVrLQAlvRG~~VRrQa~~tlr~~~A~vrIQa~iRarr~R~s 126 (302)
.+..++.+|..+||+++|+++.. ...+++.||...|.++.|..
T Consensus 773 ~~~~~~~~iq~~r~~l~r~~~~k---~~~~a~~i~~~~r~~~~r~~ 815 (1052)
T 4anj_A 773 DPDHLAELVKRVNHWLICSRWKK---VQWCSLSVIKLKNKIKYRAE 815 (1052)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 44556667667999999999943 35677788877777665543
No 23
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=41.05 E-value=11 Score=22.85 Aligned_cols=16 Identities=25% Similarity=0.355 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhhHHHH
Q 022139 61 VAAIRIQTAFRAYKAR 76 (302)
Q Consensus 61 ~AAV~IQsafRGylAR 76 (302)
-|+..||-.||-+..|
T Consensus 7 YA~llI~d~~r~~k~r 22 (23)
T 3dvk_B 7 YAAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 5899999999998876
No 24
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=36.46 E-value=24 Score=21.91 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 022139 61 VAAIRIQTAFRAYKARKT 78 (302)
Q Consensus 61 ~AAV~IQsafRGylARr~ 78 (302)
-||..||-.||-+..||.
T Consensus 3 YAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hHHHHHHHHHHHHHhhhh
Confidence 489999999999999875
No 25
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=35.91 E-value=23 Score=22.02 Aligned_cols=18 Identities=44% Similarity=0.567 Sum_probs=15.2
Q ss_pred HHHHHHHHhhhHHHHHHH
Q 022139 62 AAIRIQTAFRAYKARKTF 79 (302)
Q Consensus 62 AAV~IQsafRGylARr~l 79 (302)
|-..||-.||.|..|+.-
T Consensus 4 at~LIqdyfRkfkkrke~ 21 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQ 21 (26)
T ss_pred hhhhHHHHHHHHHHhHHh
Confidence 567899999999998764
No 26
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=33.99 E-value=31 Score=23.07 Aligned_cols=19 Identities=42% Similarity=0.518 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhhHHHHHHH
Q 022139 61 VAAIRIQTAFRAYKARKTF 79 (302)
Q Consensus 61 ~AAV~IQsafRGylARr~l 79 (302)
-|-..||-.||.|..|+.-
T Consensus 12 YatfLIQdyFRkfkkrke~ 30 (37)
T 2be6_D 12 YATFLIQEYFRKFKKRKEQ 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999864
No 27
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=25.52 E-value=53 Score=34.56 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhhh
Q 022139 109 HTWSKLQAEIRARRLCM 125 (302)
Q Consensus 109 ~A~vrIQa~iRarr~R~ 125 (302)
.+++.||+.+|++.+|+
T Consensus 769 ~~~~~iQ~~~Rg~l~R~ 785 (795)
T 1w7j_A 769 AACIRIQKTIRGWLMRK 785 (795)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555666666555553
No 28
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=23.10 E-value=65 Score=19.61 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=15.5
Q ss_pred hhhhhhhhhhhhhhhHHHHHH
Q 022139 81 RLKGTIRLQGVSQRHSVQKQA 101 (302)
Q Consensus 81 ~LKgiVrLQAlvRG~~VRrQa 101 (302)
.|+.|..||.-||-.+-.+|.
T Consensus 2 vlrtitnlqkkirkelkqrql 22 (26)
T 1m46_B 2 VLRTITNLQKKIRKELKQRQL 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888877777775
No 29
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=22.05 E-value=12 Score=22.67 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhhHHHH
Q 022139 61 VAAIRIQTAFRAYKAR 76 (302)
Q Consensus 61 ~AAV~IQsafRGylAR 76 (302)
-||..||-.||-+..|
T Consensus 6 YAallI~d~~r~~k~~ 21 (23)
T 3dve_B 6 YAALMIFDFYKQNKTS 21 (26)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhhc
Confidence 5899999999987654
Done!