Your job contains 1 sequence.
>022140
MGLPNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASAD
GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVA
KQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP
TVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEE
SIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME
ID
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022140
(302 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2202705 - symbol:AT1G60080 "AT1G60080" species... 1043 2.2e-105 1
RGD|1306169 - symbol:Exosc8 "exosome component 8" species... 439 2.2e-41 1
UNIPROTKB|Q96B26 - symbol:EXOSC8 "Exosome complex compone... 435 5.9e-41 1
UNIPROTKB|E2R7U8 - symbol:EXOSC8 "Uncharacterized protein... 432 1.2e-40 1
MGI|MGI:1916889 - symbol:Exosc8 "exosome component 8" spe... 430 2.0e-40 1
UNIPROTKB|E1BUV1 - symbol:LOC100858560 "Uncharacterized p... 429 2.6e-40 1
UNIPROTKB|Q2KHU3 - symbol:EXOSC8 "Exosome complex compone... 422 1.4e-39 1
POMBASE|SPBC17D1.03c - symbol:SPBC17D1.03c "exosome subun... 329 1.0e-29 1
TAIR|locus:2089215 - symbol:RRP45a "AT3G12990" species:37... 235 9.2e-20 1
UNIPROTKB|F1RSQ6 - symbol:EXOSC8 "Uncharacterized protein... 232 1.9e-19 1
TAIR|locus:2103316 - symbol:CER7 "AT3G60500" species:3702... 231 9.1e-19 1
UNIPROTKB|F1S1T6 - symbol:EXOSC9 "Uncharacterized protein... 221 1.2e-17 1
RGD|1307888 - symbol:Exosc9 "exosome component 9" species... 220 1.5e-17 1
MGI|MGI:1355319 - symbol:Exosc9 "exosome component 9" spe... 220 1.5e-17 1
UNIPROTKB|F1MB54 - symbol:EXOSC9 "Exosome complex compone... 216 4.2e-17 1
UNIPROTKB|Q3SWZ4 - symbol:EXOSC9 "Exosome complex compone... 216 4.2e-17 1
TAIR|locus:2077522 - symbol:AT3G07750 "AT3G07750" species... 209 5.3e-17 1
UNIPROTKB|Q06265 - symbol:EXOSC9 "Exosome complex compone... 215 5.4e-17 1
WB|WBGene00018154 - symbol:exos-9 species:6239 "Caenorhab... 190 5.7e-13 1
UNIPROTKB|F1NJI1 - symbol:EXOSC9 "Uncharacterized protein... 187 1.1e-12 1
FB|FBgn0034065 - symbol:Rrp42 "Rrp42" species:7227 "Droso... 183 1.2e-12 1
POMBASE|SPCC757.08 - symbol:SPCC757.08 "exosome subunit R... 173 2.5e-11 1
GENEDB_PFALCIPARUM|PF13_0340 - symbol:PF13_0340 "exosome ... 172 1.4e-10 1
UNIPROTKB|Q8ID62 - symbol:PF13_0340 "Exosome complex exon... 172 1.4e-10 1
UNIPROTKB|Q15024 - symbol:EXOSC7 "Exosome complex compone... 164 3.5e-10 1
ASPGD|ASPL0000004691 - symbol:AN6111 species:162425 "Emer... 162 6.6e-10 1
MGI|MGI:1913696 - symbol:Exosc7 "exosome component 7" spe... 155 4.5e-09 1
ZFIN|ZDB-GENE-050417-47 - symbol:exosc7 "exosome componen... 155 4.5e-09 1
SGD|S000002688 - symbol:RRP45 "Exosome non-catalytic core... 139 4.3e-07 1
RGD|1309758 - symbol:Exosc7 "exosome component 7" species... 135 7.7e-07 1
FB|FBgn0030789 - symbol:Rrp45 "Rrp45" species:7227 "Droso... 139 8.2e-07 1
GENEDB_PFALCIPARUM|MAL13P1.204 - symbol:MAL13P1.204 "exor... 115 1.7e-06 2
UNIPROTKB|Q8IDT4 - symbol:MAL13P1.204 "Exoribonuclease PH... 115 1.7e-06 2
UNIPROTKB|Q8MPG3 - symbol:EAP2 "Exosome-associated protei... 132 2.6e-06 1
WB|WBGene00009289 - symbol:exos-7 species:6239 "Caenorhab... 118 0.00012 1
UNIPROTKB|G5EI70 - symbol:MGCH7_ch7g406 "Exosome complex ... 83 0.00031 2
>TAIR|locus:2202705 [details] [associations]
symbol:AT1G60080 "AT1G60080" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0042991
"transcription factor import into nucleus" evidence=RCA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AC005966 SUPFAM:SSF55666 eggNOG:COG2123
HOGENOM:HOG000229504 KO:K12586 OMA:ECINRAT EMBL:BT004614
EMBL:AK227971 IPI:IPI00541560 PIR:D96625 RefSeq:NP_176216.1
UniGene:At.36723 ProteinModelPortal:Q9ZUI4 SMR:Q9ZUI4 IntAct:Q9ZUI4
STRING:Q9ZUI4 PaxDb:Q9ZUI4 PRIDE:Q9ZUI4 EnsemblPlants:AT1G60080.1
GeneID:842303 KEGG:ath:AT1G60080 TAIR:At1g60080 InParanoid:Q9ZUI4
PhylomeDB:Q9ZUI4 ProtClustDB:CLSN2679723 Genevestigator:Q9ZUI4
Uniprot:Q9ZUI4
Length = 302
Score = 1043 (372.2 bits), Expect = 2.2e-105, P = 2.2e-105
Identities = 208/306 (67%), Positives = 248/306 (81%)
Query: 1 MGLPNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASAD 60
MG+P+A++DLS+EMEVDAFRR+FPLR+FERHL+ES+RPD R L +AR+T +++G V++AD
Sbjct: 1 MGIPDAAQDLSTEMEVDAFRRIFPLRFFERHLSESLRPDGRQLGKARDTIVNLGLVSTAD 60
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVA 120
GSALAKIGSTTMLAAI+MEVMTPS +SPDEGC++I+FHMPPICSP VRPGRPAEAAPV++
Sbjct: 61 GSALAKIGSTTMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVIS 120
Query: 121 KQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIP 180
K+LSDTI SSGMI+LKEL LV GKAAWM YLDIYC +AVAAFSNLQIP
Sbjct: 121 KRLSDTILSSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQIP 180
Query: 181 TVSLDD-GKIVMLPXXXXXXXXXXXP---VNKEKRKLTLGGIPFSLTCILHKNYILADPT 236
V+L+D G+IV + VNKEKRKLTL IPFSLTCILHKNYILADPT
Sbjct: 181 IVALNDNGRIVAVTGEKDQDNALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYILADPT 240
Query: 237 SEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+EEESIM+TLVTVVLDSS+Q+VS YK GGA LAY+SA++ C+ L R+R KEL QIL E
Sbjct: 241 TEEESIMDTLVTVVLDSSDQMVSFYKSGGAALAYSSAIKSCVELARKRAKELKQILGE-- 298
Query: 297 SGMEID 302
M+ID
Sbjct: 299 --MDID 302
>RGD|1306169 [details] [associations]
symbol:Exosc8 "exosome component 8" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0017091 "AU-rich element binding" evidence=ISO]
[GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1306169
InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725 SUPFAM:SSF55666
GeneTree:ENSGT00530000063093 OMA:QAASQFI OrthoDB:EOG47M1ZJ
EMBL:CH474003 IPI:IPI00372206 UniGene:Rn.93933
Ensembl:ENSRNOT00000017993 UCSC:RGD:1306169 Uniprot:D4AE98
Length = 276
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 94/284 (33%), Positives = 158/284 (55%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 5 FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKA 64
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E P +++PD G V + +PP+CS R G P E A V ++ ++D I +S +I ++L
Sbjct: 65 EFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVIENSQIIKKEDL 124
Query: 139 SLVGGKAAWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXXXX 198
+ GK AW++Y D+ C + +AA N+Q+P V++++
Sbjct: 125 CISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINE------------ 172
Query: 199 XXXXXXPVN-KEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
VN K+K L + P + + + ++ DPT EEE + +TVV+D +
Sbjct: 173 -ETALAEVNLKKKSYLNVRANPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++L+E I M+
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVSKLLDEVIQSMK 274
>UNIPROTKB|Q96B26 [details] [associations]
symbol:EXOSC8 "Exosome complex component RRP43"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0000178 "exosome (RNase
complex)" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0004532 "exoribonuclease activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005829
GO:GO:0005634 GO:GO:0010467 GO:GO:0005730 EMBL:CH471075
GO:GO:0017091 GO:GO:0000178 EMBL:AL138706 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG2123 HOGENOM:HOG000229504
CTD:11340 HOVERGEN:HBG051522 KO:K12586 OMA:QAASQFI
OrthoDB:EOG47M1ZJ EMBL:BC020773 EMBL:AF025438 IPI:IPI00552920
RefSeq:NP_852480.1 UniGene:Hs.294041 ProteinModelPortal:Q96B26
SMR:Q96B26 IntAct:Q96B26 STRING:Q96B26 PhosphoSite:Q96B26
DMDM:21759409 SWISS-2DPAGE:Q96B26 PaxDb:Q96B26 PeptideAtlas:Q96B26
PRIDE:Q96B26 DNASU:11340 Ensembl:ENST00000389704 GeneID:11340
KEGG:hsa:11340 UCSC:uc001uwa.3 GeneCards:GC13P037572
HGNC:HGNC:17035 MIM:606019 neXtProt:NX_Q96B26 PharmGKB:PA134922251
InParanoid:Q96B26 EvolutionaryTrace:Q96B26 GenomeRNAi:11340
NextBio:43089 ArrayExpress:Q96B26 Bgee:Q96B26 CleanEx:HS_EXOSC8
Genevestigator:Q96B26 GermOnline:ENSG00000120699 Uniprot:Q96B26
Length = 276
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 92/284 (32%), Positives = 158/284 (55%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 5 FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKA 64
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E PS ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++L
Sbjct: 65 EFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124
Query: 139 SLVGGKAAWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXXXX 198
+ GK W++Y D+ C + +AA N+Q+P V++++
Sbjct: 125 CISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINE------------ 172
Query: 199 XXXXXXPVN-KEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
VN K+K L + P + + + ++ DPT EEE + +T+V+D +
Sbjct: 173 -ETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E I M+
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 274
>UNIPROTKB|E2R7U8 [details] [associations]
symbol:EXOSC8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005634 GO:GO:0005737 GO:GO:0017091 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725 SUPFAM:SSF55666
GeneTree:ENSGT00530000063093 CTD:11340 KO:K12586 EMBL:AAEX03014203
RefSeq:XP_534492.2 Ensembl:ENSCAFT00000009898 GeneID:477300
KEGG:cfa:477300 NextBio:20852818 Uniprot:E2R7U8
Length = 276
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 94/284 (33%), Positives = 157/284 (55%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ IK
Sbjct: 5 FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKA 64
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E P ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++L
Sbjct: 65 EFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124
Query: 139 SLVGGKAAWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXXXX 198
+ GK +W++Y DI C + +AA N Q+P V++++
Sbjct: 125 CISPGKLSWVLYCDIICLDYDGNILDACTFALLAALKNAQLPEVTINE------------ 172
Query: 199 XXXXXXPVN-KEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
VN K+K L + P + + + ++ DPT EEE + +TVV+D +
Sbjct: 173 -ETGLAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E I M+
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 274
>MGI|MGI:1916889 [details] [associations]
symbol:Exosc8 "exosome component 8" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 MGI:MGI:1916889 Pfam:PF01138
GO:GO:0005737 GO:GO:0005730 GO:GO:0017091 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG2123 GeneTree:ENSGT00530000063093
CTD:11340 HOVERGEN:HBG051522 KO:K12586 OMA:QAASQFI
OrthoDB:EOG47M1ZJ EMBL:AK009584 IPI:IPI00109639 RefSeq:NP_081424.3
UniGene:Mm.29253 ProteinModelPortal:Q9D753 SMR:Q9D753 STRING:Q9D753
PhosphoSite:Q9D753 PaxDb:Q9D753 PRIDE:Q9D753
Ensembl:ENSMUST00000029316 GeneID:69639 KEGG:mmu:69639
InParanoid:Q9D753 NextBio:329962 Bgee:Q9D753 CleanEx:MM_EXOSC8
Genevestigator:Q9D753 GermOnline:ENSMUSG00000027752 Uniprot:Q9D753
Length = 276
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 93/283 (32%), Positives = 156/283 (55%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 5 FKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKA 64
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E P +++PD G V + +PP+CS R G P E A V ++ ++D + +S +I ++L
Sbjct: 65 EFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDL 124
Query: 139 SLVGGKAAWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXXXX 198
+ GK AW++Y D+ C + +AA N+Q+P V++++
Sbjct: 125 CISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINE------------ 172
Query: 199 XXXXXXPVN-KEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
VN K+K L + P + + + ++ DPT EEE + +TVV D +
Sbjct: 173 -ETALAEVNLKKKSYLNVRTNPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
L L+KPGG+ L + +QDC++ R KE+ ++L+E I M
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVSKLLDEVIQSM 273
>UNIPROTKB|E1BUV1 [details] [associations]
symbol:LOC100858560 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634
GO:GO:0005737 GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 Pfam:PF03725 SUPFAM:SSF55666
GeneTree:ENSGT00530000063093 OMA:QAASQFI EMBL:AADN02005299
IPI:IPI00580554 Ensembl:ENSGALT00000027544 Uniprot:E1BUV1
Length = 277
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 92/286 (32%), Positives = 161/286 (56%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
AF+ + PL Y+ R L E+ RPD R L R TT+++G++ +ADGSAL K+G+TT++ +K
Sbjct: 4 AFKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSITTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E+ P+L+S ++G + + +P +CS R G P E A ++ ++D I +S +I ++
Sbjct: 64 AELAAPALDSANKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADVIENSQVIAKED 123
Query: 138 LSLVGGKAAWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXXX 197
L + GK AW++Y DI C + +AA N+Q+P+V++++
Sbjct: 124 LCIADGKLAWVLYCDIICLDYDGNILDASTFALLAALKNVQLPSVTINE----------- 172
Query: 198 XXXXXXXPVN-KEKRKLTLGGIPFSLTCIL--HKNYILADPTSEEESIMETLVTVVLDSS 254
VN K+K L + P + + + ++ DPT+EEE + VTVV D
Sbjct: 173 --ETGLSEVNLKQKNPLVIRKHPVATSFAIFDESTLLIVDPTAEEEDLATGTVTVVTDED 230
Query: 255 NQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
++L S++KPGG+ L + +QDCI+ R KE+ +++++ I ++
Sbjct: 231 DRLCSVHKPGGSPLT-GAKLQDCISRAITRHKEVKKLIDKVIKSIK 275
>UNIPROTKB|Q2KHU3 [details] [associations]
symbol:EXOSC8 "Exosome complex component RRP43"
species:9913 "Bos taurus" [GO:0000178 "exosome (RNase complex)"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG2123 HOGENOM:HOG000229504 GeneTree:ENSGT00530000063093
EMBL:BC112881 IPI:IPI00692861 RefSeq:NP_001073074.1
UniGene:Bt.55156 ProteinModelPortal:Q2KHU3 SMR:Q2KHU3 STRING:Q2KHU3
Ensembl:ENSBTAT00000015733 GeneID:532080 KEGG:bta:532080 CTD:11340
HOVERGEN:HBG051522 InParanoid:Q2KHU3 KO:K12586 OMA:QAASQFI
OrthoDB:EOG47M1ZJ NextBio:20875602 Uniprot:Q2KHU3
Length = 276
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 92/284 (32%), Positives = 155/284 (54%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
F+ + PL Y+ R L E+ RPD R L R TT+++G++ +ADGSAL K+G+TT++ IK
Sbjct: 5 FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKA 64
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E P ++PD+G V + + P+CS R G P E A V ++ ++D I +S +I ++L
Sbjct: 65 EFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124
Query: 139 SLVGGKAAWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXXXX 198
+ GK AW++Y D+ C + +AA N+Q+P V++++
Sbjct: 125 CISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINE------------ 172
Query: 199 XXXXXXPVN-KEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
VN K+K L + P + + + ++ DPT EEE + +TVV+D +
Sbjct: 173 -ETALAEVNLKKKSCLNIRTHPVATSFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEEGR 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E M+
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVFKSMK 274
>POMBASE|SPBC17D1.03c [details] [associations]
symbol:SPBC17D1.03c "exosome subunit Rrp43 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=ISO] [GO:0070651 "nonfunctional
rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR001247 PomBase:SPBC17D1.03c InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0071035 GO:GO:0071038
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 Pfam:PF03725 eggNOG:COG2123
HOGENOM:HOG000229504 KO:K12586 PIR:T39706 RefSeq:NP_596385.1
ProteinModelPortal:Q10205 STRING:Q10205 EnsemblFungi:SPBC17D1.03c.1
GeneID:2540189 KEGG:spo:SPBC17D1.03c OMA:ECINRAT OrthoDB:EOG4WHCW5
NextBio:20801321 Uniprot:Q10205
Length = 270
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 78/266 (29%), Positives = 134/266 (50%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
F+++ P +Y L + +R D RS+S R I+ +++A+GSA+ + G + IK
Sbjct: 17 FKKITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKA 76
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ P SP+EG + + + P+CS +PG P++ A VV+++L T+ S +INL+ L
Sbjct: 77 EIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSL 136
Query: 139 SLVGGKAAWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXXXX 198
+ KAAW++Y DI C + AA +++PT D+ ++
Sbjct: 137 CIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPTAVWDEDLERVI-----C 191
Query: 199 XXXXXXPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLV 258
PV +L+ FS + K +LADPT EEE + +T++L+SS +V
Sbjct: 192 ASTLTRPV-----QLSTEVRSFSWSVFDDK--LLADPTDEEEDLSTEFLTIMLNSSKNIV 244
Query: 259 SLYKPGGAVLAYTSAVQDCIALTRQR 284
+ K GG + ++ CI + R +
Sbjct: 245 KIIKLGGTHIQ-PLLLKKCIEVARSK 269
>TAIR|locus:2089215 [details] [associations]
symbol:RRP45a "AT3G12990" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IGI;ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM;IDA] [GO:0006396 "RNA
processing" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0010025 "wax biosynthetic process" evidence=IGI]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GO:GO:0010025 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG2123 KO:K03678 EMBL:AB026645 EMBL:BT003077 EMBL:AK227231
IPI:IPI00533330 RefSeq:NP_001030684.1 RefSeq:NP_001189874.1
RefSeq:NP_566441.1 UniGene:At.11988 ProteinModelPortal:Q9LDM2
SMR:Q9LDM2 STRING:Q9LDM2 PRIDE:Q9LDM2 DNASU:820485
EnsemblPlants:AT3G12990.1 EnsemblPlants:AT3G12990.2
EnsemblPlants:AT3G12990.3 GeneID:820485 KEGG:ath:AT3G12990
TAIR:At3g12990 InParanoid:Q9LDM2 OMA:HEFRDIS PhylomeDB:Q9LDM2
ProtClustDB:CLSN2688326 Genevestigator:Q9LDM2 Uniprot:Q9LDM2
Length = 307
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 68/275 (24%), Positives = 124/275 (45%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ E L +R D R L R TI G GS+ ++G T ++A + +++ P
Sbjct: 17 KFVESALQSELRVDGRGLYDYRKLTIKFG---KEYGSSQVQLGQTHVMAFVTAQLVQPYK 73
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P EG SI P+ P PG P E+A + + + + S ++ + L ++ GK
Sbjct: 74 DRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRAVDTESLCVLAGKL 133
Query: 146 AWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIP--TVSLDDGKIVMLPXXXXXXXXXX 203
W V +D++ +A+AA + P TV D+ + V++
Sbjct: 134 VWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVII----------H 183
Query: 204 XPVNKEKRKLTLGGIPFSLTC-ILHKNYILA-DPTSEEESIMETLVTVVLDSSNQLVSLY 261
P +E L + +P + T +K IL DPT EE++M +TV ++++ + ++
Sbjct: 184 PPEEREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDICAIQ 243
Query: 262 KPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
KPG + S + C+ L R +I+ +A+
Sbjct: 244 KPGEEGVNQ-SVILHCLRLASSRASATTKIIRDAV 277
>UNIPROTKB|F1RSQ6 [details] [associations]
symbol:EXOSC8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000178 "exosome (RNase complex)" evidence=IEA]
InterPro:IPR001247 Pfam:PF01138 GO:GO:0005634 GO:GO:0005737
GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GeneTree:ENSGT00530000063093 EMBL:CU024873
Ensembl:ENSSSCT00000010255 Uniprot:F1RSQ6
Length = 113
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 43/109 (39%), Positives = 69/109 (63%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
F+ + PL Y+ R L E+ RPD R L R TT+++G++ +ADGS+L K+G+TT++ IK
Sbjct: 5 FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSSLVKLGNTTVICGIKA 64
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI 127
E P ++PD+G + + + P+CS R G P E A V ++ ++D I
Sbjct: 65 EFGAPPTDAPDKGYIVPNVDLSPLCSWRFRSGPPGEEAQVASQFIADVI 113
>TAIR|locus:2103316 [details] [associations]
symbol:CER7 "AT3G60500" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IGI;ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM;IDA] [GO:0006396 "RNA
processing" evidence=IEA;ISS] [GO:0010025 "wax biosynthetic
process" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL138646
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 Pfam:PF03725
SUPFAM:SSF55666 HOGENOM:HOG000229504 KO:K03678 EMBL:BT004196
EMBL:BT005701 EMBL:DQ869270 IPI:IPI00517590 PIR:T47861
RefSeq:NP_001190143.1 RefSeq:NP_191609.1 RefSeq:NP_974466.1
UniGene:At.34436 ProteinModelPortal:Q9M209 SMR:Q9M209 IntAct:Q9M209
STRING:Q9M209 PRIDE:Q9M209 EnsemblPlants:AT3G60500.1
EnsemblPlants:AT3G60500.2 EnsemblPlants:AT3G60500.3 GeneID:825221
KEGG:ath:AT3G60500 TAIR:At3g60500 InParanoid:Q9M209 OMA:KEAACLD
PhylomeDB:Q9M209 ProtClustDB:CLSN2685053 Genevestigator:Q9M209
Uniprot:Q9M209
Length = 438
Score = 231 (86.4 bits), Expect = 9.1e-19, P = 9.1e-19
Identities = 67/276 (24%), Positives = 128/276 (46%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ E L +R D R L R TI G GS+ ++G T ++ + +++ P
Sbjct: 17 KFVETALQSELRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMGFVTAQLVQPYK 73
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P+EG +SI P+ P PGRP E+A + + + + S ++ + L ++ GK
Sbjct: 74 DRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKM 133
Query: 146 AWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIP--TVSLDDGKIVMLPXXXXXXXXXX 203
W V +D++ +A+AA + P TV ++G+ V++
Sbjct: 134 VWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVII----------- 182
Query: 204 XPVN-KEKRKLTLGGIPFSLTC-ILHK-NYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
P+ +E L + +P + T +K N ++ DPT EE++M +TV ++++ + ++
Sbjct: 183 HPLEEREPLPLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAI 242
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
KPG + S + C+ L R +I+ E +
Sbjct: 243 QKPGEEGVNQ-SVILHCLRLASSRAAATTKIIREEV 277
>UNIPROTKB|F1S1T6 [details] [associations]
symbol:EXOSC9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071028 "nuclear mRNA
surveillance" evidence=IEA] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634 GO:GO:0005737
GO:GO:0030307 GO:GO:0017091 GO:GO:0000178 GO:GO:0071035
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0043928 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 GeneTree:ENSGT00530000063093
OMA:YRNIRIS EMBL:CU861488 EMBL:AEMK01190186
Ensembl:ENSSSCT00000009962 Uniprot:F1S1T6
Length = 442
Score = 221 (82.9 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 55/273 (20%), Positives = 124/273 (45%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXXXXXXXXXXP 205
W + +D++ +A+ A + + P VS+ ++ + P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLY-----------TP 177
Query: 206 VNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
++ L++ +P ++ + Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 178 EERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVLEITELIQKAL 269
>RGD|1307888 [details] [associations]
symbol:Exosc9 "exosome component 9" species:10116 "Rattus
norvegicus" [GO:0000176 "nuclear exosome (RNase complex)"
evidence=ISO] [GO:0000178 "exosome (RNase complex)"
evidence=ISO;ISS] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO] [GO:0030307
"positive regulation of cell growth" evidence=IEA;ISO] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA;ISO] [GO:0071028
"nuclear mRNA surveillance" evidence=IEA;ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA;ISO]
[GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1307888
GO:GO:0005737 GO:GO:0030307 GO:GO:0005730 GO:GO:0017091
GO:GO:0000178 GO:GO:0071035 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0006364 GO:GO:0043928 GO:GO:0071028 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG2123 HOGENOM:HOG000229504
GeneTree:ENSGT00530000063093 HSSP:O29756 CTD:5393
HOVERGEN:HBG051523 KO:K03678 OrthoDB:EOG43TZVZ OMA:YRNIRIS
EMBL:BC097413 IPI:IPI00206563 RefSeq:NP_001020577.1
UniGene:Rn.13826 STRING:Q4QR75 Ensembl:ENSRNOT00000020662
GeneID:294975 KEGG:rno:294975 UCSC:RGD:1307888 InParanoid:Q4QR75
NextBio:638811 Genevestigator:Q4QR75 Uniprot:Q4QR75
Length = 437
Score = 220 (82.5 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 58/273 (21%), Positives = 124/273 (45%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXXXXXXXXXXP 205
W + +D++ +A+ A + + P VS+ G+ V L P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQ-GEEVTL----------YTP 177
Query: 206 VNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
++ L++ +P ++ + Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 178 EERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L + C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVFR-CSKIAGVKVAEITELIQKAL 269
>MGI|MGI:1355319 [details] [associations]
symbol:Exosc9 "exosome component 9" species:10090 "Mus
musculus" [GO:0000176 "nuclear exosome (RNase complex)"
evidence=ISO] [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO;TAS] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=ISO] [GO:0030307 "positive regulation of
cell growth" evidence=ISO] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=ISO] [GO:0071028 "nuclear
mRNA surveillance" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 MGI:MGI:1355319 Pfam:PF01138
GO:GO:0005737 GO:GO:0030307 GO:GO:0005730 GO:GO:0017091
GO:GO:0004527 GO:GO:0090305 GO:GO:0000178 GO:GO:0071035
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0043928
GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG2123
HOGENOM:HOG000229504 GeneTree:ENSGT00530000063093 CTD:5393
HOVERGEN:HBG051523 KO:K03678 OrthoDB:EOG43TZVZ OMA:YRNIRIS
EMBL:AF152841 EMBL:AF152842 EMBL:BC005622 EMBL:BC052156
EMBL:AK011636 IPI:IPI00119442 RefSeq:NP_062266.1 UniGene:Mm.116711
ProteinModelPortal:Q9JHI7 SMR:Q9JHI7 STRING:Q9JHI7
PhosphoSite:Q9JHI7 PaxDb:Q9JHI7 PRIDE:Q9JHI7
Ensembl:ENSMUST00000029269 GeneID:50911 KEGG:mmu:50911
UCSC:uc008ozm.1 InParanoid:Q9JHI7 NextBio:307895 Bgee:Q9JHI7
CleanEx:MM_EXOSC9 Genevestigator:Q9JHI7
GermOnline:ENSMUSG00000027714 Uniprot:Q9JHI7
Length = 438
Score = 220 (82.5 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 58/273 (21%), Positives = 124/273 (45%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXXXXXXXXXXP 205
W + +D++ +A+ A + + P VS+ G+ V L P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQ-GEEVTL----------YTP 177
Query: 206 VNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
++ L++ +P ++ + Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 178 EERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L + C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVFR-CSKIAGVKVAEITELIQKAL 269
>UNIPROTKB|F1MB54 [details] [associations]
symbol:EXOSC9 "Exosome complex component RRP45"
species:9913 "Bos taurus" [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634 GO:GO:0005737
GO:GO:0030307 GO:GO:0017091 GO:GO:0000178 GO:GO:0071035
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0043928 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 GeneTree:ENSGT00530000063093
IPI:IPI00714906 UniGene:Bt.12557 OMA:YRNIRIS EMBL:DAAA02015230
Ensembl:ENSBTAT00000006502 Uniprot:F1MB54
Length = 440
Score = 216 (81.1 bits), Expect = 4.2e-17, P = 4.2e-17
Identities = 56/273 (20%), Positives = 124/273 (45%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXXXXXXXXXXP 205
W + +D++ +A+ A + + P VS+ ++ + P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLY------TLEERDP 182
Query: 206 VNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P ++ + Y+L DP+ EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVVEITELIQKAL 269
>UNIPROTKB|Q3SWZ4 [details] [associations]
symbol:EXOSC9 "Exosome complex component RRP45"
species:9913 "Bos taurus" [GO:0000178 "exosome (RNase complex)"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG2123 HOGENOM:HOG000229504 EMBL:BC104587 IPI:IPI00714906
RefSeq:NP_001030225.1 UniGene:Bt.12557 HSSP:O29756 STRING:Q3SWZ4
PRIDE:Q3SWZ4 GeneID:508005 KEGG:bta:508005 CTD:5393
HOVERGEN:HBG051523 InParanoid:Q3SWZ4 KO:K03678 OrthoDB:EOG43TZVZ
NextBio:20868308 Uniprot:Q3SWZ4
Length = 440
Score = 216 (81.1 bits), Expect = 4.2e-17, P = 4.2e-17
Identities = 56/273 (20%), Positives = 124/273 (45%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXXXXXXXXXXP 205
W + +D++ +A+ A + + P VS+ ++ + P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLY------TLEERDP 182
Query: 206 VNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P ++ + Y+L DP+ EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVVEITELIQKAL 269
>TAIR|locus:2077522 [details] [associations]
symbol:AT3G07750 "AT3G07750" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] [GO:0000478 "endonucleolytic cleavage involved in
rRNA processing" evidence=RCA] [GO:0001510 "RNA methylation"
evidence=RCA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
EMBL:CP002686 InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725
eggNOG:COG2123 KO:K12589 OMA:GRSCEDY HSSP:P50597 EMBL:AF325018
EMBL:BT020424 EMBL:AK119005 IPI:IPI00539704 RefSeq:NP_566318.1
RefSeq:NP_850537.1 UniGene:At.18345 ProteinModelPortal:Q9FPI0
SMR:Q9FPI0 IntAct:Q9FPI0 STRING:Q9FPI0 PaxDb:Q9FPI0 PRIDE:Q9FPI0
EnsemblPlants:AT3G07750.1 EnsemblPlants:AT3G07750.2 GeneID:819966
KEGG:ath:AT3G07750 TAIR:At3g07750 InParanoid:Q9FPI0
PhylomeDB:Q9FPI0 ProtClustDB:CLSN2688156 Genevestigator:Q9FPI0
Uniprot:Q9FPI0
Length = 286
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 69/274 (25%), Positives = 117/274 (42%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+A+ +R D R R + G + A+GSA +IG T ++A++K E+ PS PD+G
Sbjct: 15 IAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSLQPDKG 74
Query: 92 CVSIDFHMPPICSPLV--RPGRP--AEAAPVVAKQLSDTISSSGM-INLKELSLVGGKAA 146
V++ P P R G +E A + + L S +G INL L + GK
Sbjct: 75 KVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIKEGKVC 134
Query: 147 WMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXXXXXXXXXXPV 206
W +Y+D + AA +N IP V++
Sbjct: 135 WDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVS-------AEVADDEQPEIDIS 187
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
++E + +P +T + + D T+EEES M + V++ ++ + + L K G+
Sbjct: 188 DEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGLTKRSGS 247
Query: 267 VLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L S + D I++ + + L L+ IS E
Sbjct: 248 GLD-PSVILDMISVAKHVTETLMSKLDSEISAAE 280
>UNIPROTKB|Q06265 [details] [associations]
symbol:EXOSC9 "Exosome complex component RRP45"
species:9606 "Homo sapiens" [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0006364
"rRNA processing" evidence=NAS] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IDA;NAS] [GO:0006955 "immune response"
evidence=NAS] [GO:0000178 "exosome (RNase complex)" evidence=IDA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IMP] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IMP;TAS] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0004532
"exoribonuclease activity" evidence=IDA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP]
[GO:0071028 "nuclear mRNA surveillance" evidence=IMP] [GO:0030307
"positive regulation of cell growth" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005634 GO:GO:0030307
GO:GO:0006955 GO:GO:0005730 GO:GO:0017091 GO:GO:0071035
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AC079341 GO:GO:0006364
GO:GO:0000176 GO:GO:0000175 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6
GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG2123
HOGENOM:HOG000229504 CTD:5393 HOVERGEN:HBG051523 KO:K03678
OrthoDB:EOG43TZVZ EMBL:M58460 EMBL:U09215 EMBL:AJ505989
EMBL:AJ517294 IPI:IPI00029697 IPI:IPI00607722 IPI:IPI00654592
IPI:IPI00845426 PIR:G01425 RefSeq:NP_001029366.1 RefSeq:NP_005024.2
UniGene:Hs.91728 ProteinModelPortal:Q06265 SMR:Q06265 IntAct:Q06265
MINT:MINT-1036055 STRING:Q06265 PhosphoSite:Q06265 DMDM:147744559
PaxDb:Q06265 PRIDE:Q06265 Ensembl:ENST00000243498
Ensembl:ENST00000379663 GeneID:5393 KEGG:hsa:5393 UCSC:uc003idz.3
UCSC:uc003iea.3 GeneCards:GC04P122722 HGNC:HGNC:9137 HPA:HPA041838
MIM:606180 neXtProt:NX_Q06265 PharmGKB:PA33463 OMA:YRNIRIS
EvolutionaryTrace:Q06265 GenomeRNAi:5393 NextBio:20906
ArrayExpress:Q06265 Bgee:Q06265 CleanEx:HS_EXOSC9
Genevestigator:Q06265 GermOnline:ENSG00000123737 Uniprot:Q06265
Length = 439
Score = 215 (80.7 bits), Expect = 5.4e-17, P = 5.4e-17
Identities = 54/273 (19%), Positives = 123/273 (45%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + + + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXXXXXXXXXXP 205
W + +D++ +A+ A + + P VS+ ++ + P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLY-----------TP 177
Query: 206 VNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
++ L++ +P ++ + Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 178 EERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>WB|WBGene00018154 [details] [associations]
symbol:exos-9 species:6239 "Caenorhabditis elegans"
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0000003 InterPro:IPR020568 SUPFAM:SSF54211 EMBL:FO081316
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG2123
GeneTree:ENSGT00530000063093 KO:K12586 PIR:T28842
RefSeq:NP_741217.1 ProteinModelPortal:Q20128 SMR:Q20128
STRING:Q20128 PaxDb:Q20128 PRIDE:Q20128 EnsemblMetazoa:F37C12.13a.1
EnsemblMetazoa:F37C12.13a.2 EnsemblMetazoa:F37C12.13a.3
GeneID:176012 KEGG:cel:CELE_F37C12.13 UCSC:F37C12.13a.2 CTD:176012
WormBase:F37C12.13a HOGENOM:HOG000020941 InParanoid:Q20128
OMA:LESLCVA NextBio:890730 ArrayExpress:Q20128 Uniprot:Q20128
Length = 434
Score = 190 (71.9 bits), Expect = 5.7e-13, P = 5.7e-13
Identities = 60/268 (22%), Positives = 119/268 (44%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D RSL R+ + +GA G+A+ IG+T ++AA+ E+ PS P +G ++ID
Sbjct: 23 RFDFRSLEEFRDVKLVVGAEV---GTAICTIGNTKVMAAVSAEIAEPSSMRPHKGVINID 79
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCX 156
+ P+ + R + + L I S I+++ L + GK W + +D+
Sbjct: 80 VDLSPMANYANEHDRLGSKGMELIRLLELIIRDSRCIDVEALCIRAGKEIWKIRVDVRIL 139
Query: 157 XXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXXXXXXXXXXPVNKEKRKLTLG 216
+A+ A + + P V+L+ ++ PV L +
Sbjct: 140 DEDGSLLDCACLAAITALQHFRRPNVTLEPHHTLIY------SEYEKAPV-----PLNIY 188
Query: 217 GIPFSLTC-ILHKNYILA-DPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAV 274
+P T +L K I+ DPT +E + ++ + V + ++ +L++ +L+ T +
Sbjct: 189 HMPICTTIGLLDKGQIVVIDPTDKETACLDGSIVVACNKRREVCALHQSTNLILS-TKQI 247
Query: 275 QDCIALTRQRVKELHQILEEAISGMEID 302
+ C+ L R + L ++ + I +I+
Sbjct: 248 ERCVKLAMARAEALTAVVSDVIKQDQIE 275
>UNIPROTKB|F1NJI1 [details] [associations]
symbol:EXOSC9 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0071035
"nuclear polyadenylation-dependent rRNA catabolic process"
evidence=IEA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005634 GO:GO:0005737 GO:GO:0030307 GO:GO:0017091
GO:GO:0000178 GO:GO:0071035 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0043928 GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666
GeneTree:ENSGT00530000063093 OMA:YRNIRIS EMBL:AADN02008699
EMBL:AADN02009245 EMBL:AADN02009246 IPI:IPI00579597
Ensembl:ENSGALT00000019390 ArrayExpress:F1NJI1 Uniprot:F1NJI1
Length = 387
Score = 187 (70.9 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 46/229 (20%), Positives = 106/229 (46%)
Query: 72 MLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSG 131
+L + E++ P EG + + + P+ +P PGR +E V + + + +S
Sbjct: 2 VLGQVSCELVPPKPNRATEGILFCNLELSPMAAPGFEPGRQSELLVKVNRLIERCLRNSK 61
Query: 132 MINLKELSLVGGKAAWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVM 191
I+ + L +V G+ W + +D++ + + A + + P VS+ GK V
Sbjct: 62 CIDTESLCVVAGEKVWQIRVDLHLLNHDGNIVDAASIAGIVALCHFRRPDVSVQ-GKEVT 120
Query: 192 LPXXXXXXXXXXXPVNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTV 249
+ P ++ L++ +P ++ + Y+L DP EE +M+ L+ +
Sbjct: 121 V----------YSPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVI 170
Query: 250 VLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISG 298
++ ++ ++ GG +L ++ C +T +V E+ +++++A++G
Sbjct: 171 AMNKHREICTIQSSGGIMLLKDQVLR-CNKITAVKVAEITELIQKALNG 218
>FB|FBgn0034065 [details] [associations]
symbol:Rrp42 "Rrp42" species:7227 "Drosophila melanogaster"
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005652
"nuclear lamina" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
EMBL:AE013599 GO:GO:0005737 GO:GO:0022008 GO:GO:0016787
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0005652 GO:GO:0000176
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG2123 KO:K12589
GeneTree:ENSGT00530000063093 EMBL:BT024331 RefSeq:NP_725517.2
UniGene:Dm.16025 SMR:Q29QQ9 IntAct:Q29QQ9 STRING:Q29QQ9
EnsemblMetazoa:FBtr0087206 GeneID:36766 KEGG:dme:Dmel_CG8395
UCSC:CG8395-RA CTD:36766 FlyBase:FBgn0034065 InParanoid:Q29QQ9
OMA:DRNNKTP OrthoDB:EOG444J25 GenomeRNAi:36766 NextBio:800273
Uniprot:Q29QQ9
Length = 296
Score = 183 (69.5 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 64/278 (23%), Positives = 123/278 (44%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D RS R + G V++A GSA ++ +T +L +K E+ P+
Sbjct: 13 YILHGVEDDFRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPNPL 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRP-AEAAPVVAKQLSDTISSSGMINLKELSLVG 142
+P+ G ++F + CS P GR ++ A + L + S N + L L+
Sbjct: 73 TPEFG--KLEFFVD--CSANATPEFEGRGGSDLAQELILSLQNAYESPLAFNYRTLCLIP 128
Query: 143 GKAAWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXXXXXXXX 202
G+ W +Y+DI +A AA N ++P V+ ML
Sbjct: 129 GQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLPRVTA-----TMLDAGITDLIIS 183
Query: 203 XXPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEE--SIMETLVTVVLDSSNQLVS- 259
P + ++ + +P +T +Y+L DP++EEE S + +V+V + + +S
Sbjct: 184 DNPY--DCTRIGIETVPLLVTVCKIGDYVLVDPSAEEEVCSTVSMVVSVSMRNGQAFLSG 241
Query: 260 LYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
+ GG + + +++C+ L + L ++L + ++
Sbjct: 242 THLTGGGAM-HRDTMRNCLELGLAIGEHLDRLLTKMLN 278
>POMBASE|SPCC757.08 [details] [associations]
symbol:SPCC757.08 "exosome subunit Rrp45 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=ISO] [GO:0070651 "nonfunctional
rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR001247 PomBase:SPCC757.08 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 GO:GO:0071035 GO:GO:0071038
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 Pfam:PF03725 eggNOG:COG2123
HOGENOM:HOG000229504 KO:K03678 PIR:T41599 RefSeq:NP_587683.1
ProteinModelPortal:O74918 STRING:O74918 EnsemblFungi:SPCC757.08.1
GeneID:2539106 KEGG:spo:SPCC757.08 OMA:LIDASCI OrthoDB:EOG4X0R2H
NextBio:20800278 Uniprot:O74918
Length = 291
Score = 173 (66.0 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 60/289 (20%), Positives = 118/289 (40%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
+S +E + F L E+ L R D R LS R+ I G G G
Sbjct: 1 MSRHLETSLNNKEFVLNSLEKGL----RLDGRQLSDFRSLEIQFG---KEYGQVDVSFGH 53
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T ++A I E+ P + P +G SI + P+ GR ++ V+++ + +
Sbjct: 54 TRVMARITTEITKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRR 113
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKI 189
S ++ + L ++ G+ W V ++ + +AA + + P +++ ++
Sbjct: 114 SNALDTESLCIISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRPELTVVGEEV 173
Query: 190 VMLPXXXXXXXXXXXPVNKEKRKLTLGGIPFSLTCILHKNYILA--DPTSEEESIMETLV 247
+ P PV L++ +P +T N LA D T EEE + +
Sbjct: 174 TVHPVEERV------PV-----PLSILHMPICVTFSFFNNGELAIVDATLEEEDLCNGSM 222
Query: 248 TVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
T+ L+ + ++ +YK GG ++ S + C + ++++A+
Sbjct: 223 TITLNKNREVCQIYKAGGIIID-PSKIISCAKTAFDIAVSVCSVIQQAL 270
>GENEDB_PFALCIPARUM|PF13_0340 [details] [associations]
symbol:PF13_0340 "exosome complex exonuclease,
putative" species:5833 "Plasmodium falciparum" [GO:0000178 "exosome
(RNase complex)" evidence=ISS] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0004527 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AL844509 Pfam:PF03725
SUPFAM:SSF55666 RefSeq:XP_001350356.1 ProteinModelPortal:Q8ID62
EnsemblProtists:PF13_0340:mRNA GeneID:814299 KEGG:pfa:PF13_0340
EuPathDB:PlasmoDB:PF3D7_1364500 HOGENOM:HOG000281747 KO:K01149
OMA:RESIHEN ProtClustDB:CLSZ2433147 Uniprot:Q8ID62
Length = 477
Score = 172 (65.6 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 59/277 (21%), Positives = 117/277 (42%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
+ +F +++ ++IR D R+ +RN I+ G IG T ++ I E++ P
Sbjct: 8 VNHFWKNIKKNIRLDGRTFEDSRNVCINF---LKDYGHVEISIGFTKVICKITSEIVKPH 64
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGK 144
EG + I+ + ++ + + + +S +IN + L ++ GK
Sbjct: 65 DRKLKEGILKINLDIDNFIEDNENSDNMSDECLEIKNIIDRVLKTSNIINFESLCIIPGK 124
Query: 145 AAWMVYLDIYCXXXXXXXXXXXXXSAVAA---FSNLQIPTVSLDDGKIVMLPXXXXXXXX 201
W + ++I SA F N Q+ + +G I++
Sbjct: 125 KVWCICINIMVIENDGNLTDACYLSAYCGLVHFKNHQVRVIK--NGDIII---------- 172
Query: 202 XXXPVNKEKRKLTLGGIPFSLTCILHKNY--ILADPTSEEESIMETLVTVVLDSSNQLVS 259
+N L++ P T ++ + L DP EE M + +++ L+ + L+S
Sbjct: 173 DKEEINYSP--LSILNSPIVTTFAYYEEHDVCLIDPCLHEEEFMSSKISIALNKNGNLIS 230
Query: 260 LYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
L KPGG LA S + + I + ++R+ + +ILE+ +
Sbjct: 231 LLKPGGIPLA-CSHIMESIEIAKKRILTILKILEDTL 266
>UNIPROTKB|Q8ID62 [details] [associations]
symbol:PF13_0340 "Exosome complex exonuclease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000178 "exosome
(RNase complex)" evidence=ISS] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0004527 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AL844509 Pfam:PF03725
SUPFAM:SSF55666 RefSeq:XP_001350356.1 ProteinModelPortal:Q8ID62
EnsemblProtists:PF13_0340:mRNA GeneID:814299 KEGG:pfa:PF13_0340
EuPathDB:PlasmoDB:PF3D7_1364500 HOGENOM:HOG000281747 KO:K01149
OMA:RESIHEN ProtClustDB:CLSZ2433147 Uniprot:Q8ID62
Length = 477
Score = 172 (65.6 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 59/277 (21%), Positives = 117/277 (42%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
+ +F +++ ++IR D R+ +RN I+ G IG T ++ I E++ P
Sbjct: 8 VNHFWKNIKKNIRLDGRTFEDSRNVCINF---LKDYGHVEISIGFTKVICKITSEIVKPH 64
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGK 144
EG + I+ + ++ + + + +S +IN + L ++ GK
Sbjct: 65 DRKLKEGILKINLDIDNFIEDNENSDNMSDECLEIKNIIDRVLKTSNIINFESLCIIPGK 124
Query: 145 AAWMVYLDIYCXXXXXXXXXXXXXSAVAA---FSNLQIPTVSLDDGKIVMLPXXXXXXXX 201
W + ++I SA F N Q+ + +G I++
Sbjct: 125 KVWCICINIMVIENDGNLTDACYLSAYCGLVHFKNHQVRVIK--NGDIII---------- 172
Query: 202 XXXPVNKEKRKLTLGGIPFSLTCILHKNY--ILADPTSEEESIMETLVTVVLDSSNQLVS 259
+N L++ P T ++ + L DP EE M + +++ L+ + L+S
Sbjct: 173 DKEEINYSP--LSILNSPIVTTFAYYEEHDVCLIDPCLHEEEFMSSKISIALNKNGNLIS 230
Query: 260 LYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
L KPGG LA S + + I + ++R+ + +ILE+ +
Sbjct: 231 LLKPGGIPLA-CSHIMESIEIAKKRILTILKILEDTL 266
>UNIPROTKB|Q15024 [details] [associations]
symbol:EXOSC7 "Exosome complex component RRP42"
species:9606 "Homo sapiens" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000178 "exosome
(RNase complex)" evidence=IDA;TAS] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=TAS] [GO:0006364 "rRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006401 "RNA catabolic process" evidence=NAS] [GO:0004532
"exoribonuclease activity" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005730 GO:GO:0003723
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
GO:GO:0000175 EMBL:AC104165 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6
Pfam:PF03725 eggNOG:COG2123 KO:K12589 OMA:GRSCEDY EMBL:BC012831
EMBL:D29958 IPI:IPI00014198 RefSeq:NP_055819.2 UniGene:Hs.719958
ProteinModelPortal:Q15024 SMR:Q15024 IntAct:Q15024
MINT:MINT-1457458 STRING:Q15024 PhosphoSite:Q15024 DMDM:21362903
SWISS-2DPAGE:Q15024 PaxDb:Q15024 PeptideAtlas:Q15024 PRIDE:Q15024
DNASU:23016 Ensembl:ENST00000265564 GeneID:23016 KEGG:hsa:23016
UCSC:uc003coh.1 CTD:23016 GeneCards:GC03P045016 H-InvDB:HIX0003236
HGNC:HGNC:28112 HPA:HPA036182 MIM:606488 neXtProt:NX_Q15024
PharmGKB:PA134880567 HOGENOM:HOG000229504 HOVERGEN:HBG051521
InParanoid:Q15024 OrthoDB:EOG47SSF7 PhylomeDB:Q15024 ChiTaRS:EXOSC7
EvolutionaryTrace:Q15024 GenomeRNAi:23016 NextBio:43952
ArrayExpress:Q15024 Bgee:Q15024 Genevestigator:Q15024
GermOnline:ENSG00000075914 Uniprot:Q15024
Length = 291
Score = 164 (62.8 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 67/277 (24%), Positives = 117/277 (42%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAE-AAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 73 KPNEGY--LEFFVD--CSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISP 128
Query: 143 GKAAWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVS-LDDGKIVMLPXXXXXXXX 201
+ W++Y+D+ + AA N +IP V L+D +
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEE------GSKDIEL 182
Query: 202 XXXPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
P + +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 183 SDDPY--DCIRLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCM 239
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAI 296
K G L S + + T +RV K LH L+ +
Sbjct: 240 RKVGKGSLDPESIFE--MMETGKRVGKVLHASLQSVV 274
>ASPGD|ASPL0000004691 [details] [associations]
symbol:AN6111 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 EMBL:BN001301 EMBL:AACD01000104
GO:GO:0004519 InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725
eggNOG:COG2123 HOGENOM:HOG000229504 KO:K03678 OMA:LIDASCI
OrthoDB:EOG4X0R2H RefSeq:XP_663715.1 ProteinModelPortal:Q5B019
STRING:Q5B019 EnsemblFungi:CADANIAT00006901 GeneID:2871127
KEGG:ani:AN6111.2 Uniprot:Q5B019
Length = 295
Score = 162 (62.1 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 60/266 (22%), Positives = 112/266 (42%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E +R D R + R T+S G G ++G T+++ I EV P + P +G
Sbjct: 19 LREGVRLDGRGADQLRPLTLSFG---EEYGHVKVQLGKTSLVVRISAEVAKPHDDRPFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + + SP GR + V L I S ++ + L ++ G + W +
Sbjct: 76 IFNIAMELTAMGSPAWENGRQGDLETYVTNVLDRVIRHSNALDTESLCILKGVSCWTIRA 135
Query: 152 DIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXXXXXXXXXXPVNKEKR 211
D++ +A + + P + DG++++ P+N +
Sbjct: 136 DVHITDYDGNLIDASCIGVMAGLQHFRRPDAVVKDGQVIVY----GLDERVPAPLNITHK 191
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK-PGGAVLAY 270
L+ + F T K IL D T +EE E V + ++++ + L K G V A
Sbjct: 192 PLS---VTFH-TFDDGKLAIL-DATRKEEQASEADVVIGMNNAGDVCYLSKFQGSPVDAL 246
Query: 271 TSAVQDCIALTRQRVKELHQILEEAI 296
+ +AL ++VK ++ I+++A+
Sbjct: 247 VFITKTSLAL--EKVKYINGIIDKAL 270
>MGI|MGI:1913696 [details] [associations]
symbol:Exosc7 "exosome component 7" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 MGI:MGI:1913696 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 EMBL:CH466587 Pfam:PF03725
eggNOG:COG2123 KO:K12589 OMA:GRSCEDY CTD:23016 HOGENOM:HOG000229504
HOVERGEN:HBG051521 OrthoDB:EOG47SSF7 EMBL:AK004437 EMBL:AK011294
EMBL:AC134248 EMBL:BC094932 EMBL:BC132363 EMBL:BC145675
IPI:IPI00132723 IPI:IPI00387489 RefSeq:NP_001074657.1
UniGene:Mm.41562 ProteinModelPortal:Q9D0M0 STRING:Q9D0M0
PhosphoSite:Q9D0M0 PaxDb:Q9D0M0 PRIDE:Q9D0M0
Ensembl:ENSMUST00000026891 GeneID:66446 KEGG:mmu:66446
GeneTree:ENSGT00530000063093 InParanoid:Q9D0M0 NextBio:321717
CleanEx:MM_EXOSC7 Genevestigator:Q9D0M0
GermOnline:ENSMUSG00000025785 Uniprot:Q9D0M0
Length = 291
Score = 155 (59.6 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 63/276 (22%), Positives = 117/276 (42%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAE-AAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++L+ L +
Sbjct: 73 KPNEGY--LEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLRSLCISP 128
Query: 143 GKAAWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVS-LDDGKIVMLPXXXXXXXX 201
+ W++Y+D+ + AA N +IP V L+D +
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEE------GAKDIEL 182
Query: 202 XXXPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
P + +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 183 SDDPY--DCIRLSVENVPCIVTLCKIGCRHVV-DATLQEEACSLASLLVSVTSKGVVTCM 239
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
K G L S + + + +++ K LH L+ +
Sbjct: 240 RKVGKGSLDPES-IFEMMESSKRVGKVLHVSLQSLL 274
>ZFIN|ZDB-GENE-050417-47 [details] [associations]
symbol:exosc7 "exosome component 7" species:7955
"Danio rerio" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
ZFIN:ZDB-GENE-050417-47 InterPro:IPR020568 SUPFAM:SSF54211
Pfam:PF03725 KO:K12589 CTD:23016 HOVERGEN:HBG051521 EMBL:BC092997
IPI:IPI00507426 RefSeq:NP_001017585.1 UniGene:Dr.84480
ProteinModelPortal:Q561W8 SMR:Q561W8 STRING:Q561W8 GeneID:550247
KEGG:dre:550247 InParanoid:Q561W8 NextBio:20879510
ArrayExpress:Q561W8 Uniprot:Q561W8
Length = 291
Score = 155 (59.6 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 63/280 (22%), Positives = 116/280 (41%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + +R D R R+ I V++ DGSA +G T +L IK E+ P
Sbjct: 13 YIMHGVRDDLRLDGRGCEDYRHMEIETDVVSNTDGSAKISLGHTDVLVGIKAEIGKPRPM 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAEAAPV-VAKQLSDTISSSGMINLKELSLVG 142
PDEG ++F + CS P GR E V ++ L ++ ++L+ L +
Sbjct: 73 VPDEGY--LEFFVD--CSANATPEFEGRGGEELGVELSNTLYKVFNNRHSLDLRSLCICP 128
Query: 143 GKAAWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXXXXXXXX 202
G+ W++Y+D+ + AA N +IP V + + +
Sbjct: 129 GENCWVLYVDVLLLQCDGNLFDAISIAIKAALFNTRIPKVHISEDE-----EGGKEIELS 183
Query: 203 XXPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
P + +L + +P +T C + +++ D T +E++ + + + + + +
Sbjct: 184 DDPF--DCMRLNVENVPCIVTLCKIGHRHVV-DATLQEKACSVASLLIAVTHTGMVTCVR 240
Query: 262 KPGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAISGME 300
K GG L S + + +RV K LH L + + E
Sbjct: 241 KMGGGSLDPESIFE--MTEAGKRVGKSLHAPLMDLLQKEE 278
>SGD|S000002688 [details] [associations]
symbol:RRP45 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071038
"nuclear polyadenylation-dependent tRNA catabolic process"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0070651 "nonfunctional rRNA decay"
evidence=IC] [GO:0034473 "U1 snRNA 3'-end processing"
evidence=IGI;IMP] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay" evidence=IC]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IDA]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IGI;IMP] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IGI;IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IC]
[GO:0034427 "nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'" evidence=IC] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IC] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IC]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR001247
SGD:S000002688 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005730
EMBL:BK006938 GO:GO:0003723 GO:GO:0071035 GO:GO:0071038 EMBL:U51030
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176 GO:GO:0000177
GO:GO:0000467 GO:GO:0070651 GO:GO:0071042 GO:GO:0070478
GO:GO:0070481 GO:GO:0071051 Pfam:PF03725 eggNOG:COG2123
HOGENOM:HOG000229504 GeneTree:ENSGT00530000063093 KO:K03678
GO:GO:0034475 GO:GO:0034476 GO:GO:0034473 PDB:2WP8 PDBsum:2WP8
OMA:LIDASCI OrthoDB:EOG4X0R2H EMBL:AY557748 PIR:S70136
RefSeq:NP_010566.1 ProteinModelPortal:Q05636 SMR:Q05636
DIP:DIP-2084N IntAct:Q05636 MINT:MINT-555570 STRING:Q05636
PaxDb:Q05636 PeptideAtlas:Q05636 EnsemblFungi:YDR280W GeneID:851874
KEGG:sce:YDR280W CYGD:YDR280w EvolutionaryTrace:Q05636
NextBio:969829 Genevestigator:Q05636 GermOnline:YDR280W
Uniprot:Q05636
Length = 305
Score = 139 (54.0 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 53/292 (18%), Positives = 120/292 (41%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++ ++E+ A F L L ++ R D RS + R+ I+ G G K+G+
Sbjct: 1 MAKDIEISASESKFILEA----LRQNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMGN 53
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGR-PAEAAPVVAKQLSDTIS 128
T + I ++ P + P EG I + P+ G E + ++ + ++
Sbjct: 54 TKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVR 113
Query: 129 SSGMINLKELSLVGGKAAWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGK 188
SG ++++ L +V G W V D++ + +A + + P +++ +
Sbjct: 114 RSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQ 173
Query: 189 IVMLPXXXXX---XXXXXXPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMET 245
I++ P P+ ++ + + D T +EE + +
Sbjct: 174 IIVHPVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDG 233
Query: 246 LVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDC---IALTRQRVKELHQILEE 294
++TV L+ + ++V + K GG + + ++ C ++ + ++ Q+L+E
Sbjct: 234 VLTVTLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQILQLLKE 285
>RGD|1309758 [details] [associations]
symbol:Exosc7 "exosome component 7" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1309758
InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725 eggNOG:COG2123
KO:K12589 CTD:23016 HOGENOM:HOG000229504 HOVERGEN:HBG051521
OrthoDB:EOG47SSF7 EMBL:BC089995 IPI:IPI00210099
RefSeq:NP_001094195.1 UniGene:Rn.45886 ProteinModelPortal:Q5EB65
IntAct:Q5EB65 STRING:Q5EB65 GeneID:316098 KEGG:rno:316098
InParanoid:Q5EB65 NextBio:670427 Genevestigator:Q5EB65
Uniprot:Q5EB65
Length = 257
Score = 135 (52.6 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 57/252 (22%), Positives = 108/252 (42%)
Query: 51 ISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRP- 109
+ V++ GSA K+G T +L +K E+ TP LE P EG ++F + CS P
Sbjct: 3 VETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLERPSEGY--LEFFVD--CSANATPE 58
Query: 110 --GRPAE-AAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCXXXXXXXXXXX 166
GR + +A L ++ ++L+ L + + W++Y+D+
Sbjct: 59 FEGRGGDDLGTEIANTLYRIFNNKSSVDLRSLCISPREHCWVLYVDVLLLECGGNLFDAI 118
Query: 167 XXSAVAAFSNLQIPTVS-LDDGKIVMLPXXXXXXXXXXXPVNKEKRKLTLGGIPFSLT-C 224
+ AA N +IP V L+D + P + +L++ +P +T C
Sbjct: 119 SIAVKAALFNTRIPRVRVLEDEE------GSKDIELSDDPY--DCIRLSVENVPCIVTLC 170
Query: 225 ILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQR 284
+ +++ D T +EE+ + V + S + + K G L S + + + +++
Sbjct: 171 KIGCRHVV-DATLQEEACSLASLLVSVTSKGVVTCMRKVGKGSLDPES-IFEMMESSKRV 228
Query: 285 VKELHQILEEAI 296
K LH L+ +
Sbjct: 229 GKVLHMSLQSLL 240
>FB|FBgn0030789 [details] [associations]
symbol:Rrp45 "Rrp45" species:7227 "Drosophila melanogaster"
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0000176
"nuclear exosome (RNase complex)" evidence=ISS] [GO:0000178
"exosome (RNase complex)" evidence=ISS] InterPro:IPR001247
Pfam:PF01138 EMBL:AE014298 GO:GO:0016787 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG2123
GeneTree:ENSGT00530000063093 KO:K03678 OMA:LESLCVA EMBL:AY089277
RefSeq:NP_573163.1 UniGene:Dm.19725 SMR:Q8T4A9 IntAct:Q8T4A9
STRING:Q8T4A9 EnsemblMetazoa:FBtr0074355 GeneID:32665
KEGG:dme:Dmel_CG9606 UCSC:CG9606-RA CTD:32665 FlyBase:FBgn0030789
InParanoid:Q8T4A9 OrthoDB:EOG495X81 GenomeRNAi:32665 NextBio:779732
Uniprot:Q8T4A9
Length = 412
Score = 139 (54.0 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 58/278 (20%), Positives = 116/278 (41%)
Query: 24 PLRYF-ERHLAESIRPDARSLSRARNTTISMGAVASAD-GSALAKIGSTTMLAAIKMEVM 81
P R F + + ++ R D R + +R+ ++ G D GS +G T +LA + E+
Sbjct: 15 PERSFVQLAVKQNQRLDGRRSNESRDVELTFGK----DWGSVAVSMGDTKVLAQVTCEMG 70
Query: 82 TPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLV 141
P+L P+EG + ++ ++ + + + + L T SS I+L+ L +
Sbjct: 71 PPALSRPNEGKIHLNVYLGGVAFLDEAHTTHDQRSLKLNSLLERTFRSSRSIDLESLCVA 130
Query: 142 GGKAAWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXXXXXXX 201
K W + +++ + +AA + + P V DG++ +
Sbjct: 131 VEKHVWCIRVNVNVLNHDGNLYDASTIATLAALMHFRRPDVWYKDGELRIFKKK------ 184
Query: 202 XXXPVNKEKRKLTLGGIPFSLTCILHKNYI--LADPTSEEESIMETLVTVVLDSSNQLVS 259
+E L P S+T ++K+ + + DPT EE+ ++++ + +S +L S
Sbjct: 185 -----EREFIPLLFHHYPVSVTYCVYKSSVQPILDPTLLEENAADSVIVLSFNSFQELCS 239
Query: 260 LYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
L GG + C R K L + +A++
Sbjct: 240 L-TAGGTAPTNARIIMQCARNAAVRCKSLLNFVRKALA 276
>GENEDB_PFALCIPARUM|MAL13P1.204 [details] [associations]
symbol:MAL13P1.204 "exoribonuclease PH,
putative" species:5833 "Plasmodium falciparum" [GO:0008033 "tRNA
processing" evidence=ISS] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0008033 InterPro:IPR020568 SUPFAM:SSF54211
EMBL:AL844509 Pfam:PF03725 SUPFAM:SSF55666 KO:K12589
RefSeq:XP_001350126.1 ProteinModelPortal:Q8IDT4
EnsemblProtists:MAL13P1.204:mRNA GeneID:813762 KEGG:pfa:MAL13P1.204
EuPathDB:PlasmoDB:PF3D7_1340100 HOGENOM:HOG000283313 OMA:DELEYAR
ProtClustDB:CLSZ2433350 Uniprot:Q8IDT4
Length = 278
Score = 115 (45.5 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 32/130 (24%), Positives = 61/130 (46%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
L Y E + +IR D R+L R+ I+ + S DGS+ ++ IK+ ++TP
Sbjct: 4 LNYIEDSINCNIRIDGRTLLTYRSIEINKNILVSGDGSSSVINEENNVICGIKLSLITPD 63
Query: 85 LESPDEGCVSIDFHMPP-ICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGG 143
+++ DEG V++ P + + ++ ++ + IN K L ++ G
Sbjct: 64 VDTYDEGNVNLQIDCPASVAANRIKKDHLQTMTTIIYN-----LCIKNNINKKILCILPG 118
Query: 144 KAAWMVYLDI 153
K AW V +++
Sbjct: 119 KFAWSVDINV 128
Score = 56 (24.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 18/97 (18%), Positives = 42/97 (43%)
Query: 206 VNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
V E IP ++ N + D + EE +++ + V + S + V+ +K G
Sbjct: 182 VENEHVNFPYENIPICISIGEINNKYIYDMSKVEEELVQNIFVVAITSKGKCVAFHKLYG 241
Query: 266 AVLAYTSAV---QDCIALTRQRVKELHQILEEAISGM 299
+ +S + ++ ++ ++HQ L++ + M
Sbjct: 242 ISMEISSILNITENSSKISHTLFDKIHQALDKIHANM 278
>UNIPROTKB|Q8IDT4 [details] [associations]
symbol:MAL13P1.204 "Exoribonuclease PH, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0008033 "tRNA
processing" evidence=ISS] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0008033 InterPro:IPR020568 SUPFAM:SSF54211
EMBL:AL844509 Pfam:PF03725 SUPFAM:SSF55666 KO:K12589
RefSeq:XP_001350126.1 ProteinModelPortal:Q8IDT4
EnsemblProtists:MAL13P1.204:mRNA GeneID:813762 KEGG:pfa:MAL13P1.204
EuPathDB:PlasmoDB:PF3D7_1340100 HOGENOM:HOG000283313 OMA:DELEYAR
ProtClustDB:CLSZ2433350 Uniprot:Q8IDT4
Length = 278
Score = 115 (45.5 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 32/130 (24%), Positives = 61/130 (46%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
L Y E + +IR D R+L R+ I+ + S DGS+ ++ IK+ ++TP
Sbjct: 4 LNYIEDSINCNIRIDGRTLLTYRSIEINKNILVSGDGSSSVINEENNVICGIKLSLITPD 63
Query: 85 LESPDEGCVSIDFHMPP-ICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGG 143
+++ DEG V++ P + + ++ ++ + IN K L ++ G
Sbjct: 64 VDTYDEGNVNLQIDCPASVAANRIKKDHLQTMTTIIYN-----LCIKNNINKKILCILPG 118
Query: 144 KAAWMVYLDI 153
K AW V +++
Sbjct: 119 KFAWSVDINV 128
Score = 56 (24.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 18/97 (18%), Positives = 42/97 (43%)
Query: 206 VNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
V E IP ++ N + D + EE +++ + V + S + V+ +K G
Sbjct: 182 VENEHVNFPYENIPICISIGEINNKYIYDMSKVEEELVQNIFVVAITSKGKCVAFHKLYG 241
Query: 266 AVLAYTSAV---QDCIALTRQRVKELHQILEEAISGM 299
+ +S + ++ ++ ++HQ L++ + M
Sbjct: 242 ISMEISSILNITENSSKISHTLFDKIHQALDKIHANM 278
>UNIPROTKB|Q8MPG3 [details] [associations]
symbol:EAP2 "Exosome-associated protein 2" species:5691
"Trypanosoma brucei" [GO:0000178 "exosome (RNase complex)"
evidence=IDA] InterPro:IPR001247 Pfam:PF01138 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG2123 EMBL:AJ430833
ProteinModelPortal:Q8MPG3 IntAct:Q8MPG3 STRING:Q8MPG3
HOGENOM:HOG000259881 ProtClustDB:CLSZ2439596 Uniprot:Q8MPG3
Length = 294
Score = 132 (51.5 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 68/289 (23%), Positives = 119/289 (41%)
Query: 25 LRYFERH----LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEV 80
L F++H L ++ R D R L R I + DG + + + + V
Sbjct: 12 LASFQQHVHQFLVQNKRLDGRPLDALREPHILRDS-KGGDGLLASTLYTDNTGMCLNCTV 70
Query: 81 M----TPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLK 136
P + PDEG +++D P S + A A VA+ + TI S ++L
Sbjct: 71 SGVFGPPPSDQPDEGRLTVDVAAPFFQSHST--DQVAAALREVARFVRSTIISC--MDLT 126
Query: 137 ELSLVGGKAAWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXX 196
EL+++ G+A W++ +++ + VAA N+ +P L +G V
Sbjct: 127 ELNIINGEACWVLQVELVILNADGGLRAAALHAVVAAIHNMLLPRSRLPNGDEV--ESRR 184
Query: 197 XXXXXXXXPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
V KL G+ F L D + EES+++ L+TVVL N
Sbjct: 185 LRFHTIPVAVTIGVYKLGASGVRF-----------LMDTNAAEESVVDGLLTVVLSDENG 233
Query: 257 LVSLYKPGG---AVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
+++ + G + L T AV + AL ++ IL+ +++ +I+
Sbjct: 234 IITFVQSGSYSISSLLLTGAVNE-FALRSAALRAA--ILKPSVAAAKIN 279
>WB|WBGene00009289 [details] [associations]
symbol:exos-7 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR001247
Pfam:PF01138 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 InterPro:IPR020568 SUPFAM:SSF54211
KO:K12589 OMA:GRSCEDY GeneTree:ENSGT00530000063093 EMBL:Z92838
EMBL:Z92832 PIR:T21601 RefSeq:NP_508024.2 ProteinModelPortal:G5EDS8
SMR:G5EDS8 EnsemblMetazoa:F31D4.1.1 EnsemblMetazoa:F31D4.1.2
GeneID:180369 KEGG:cel:CELE_F31D4.1 CTD:180369 WormBase:F31D4.1
NextBio:909072 Uniprot:G5EDS8
Length = 312
Score = 118 (46.6 bits), Expect = 0.00012, P = 0.00012
Identities = 58/226 (25%), Positives = 92/226 (40%)
Query: 35 SIRPDARSLSRARNTTISMGAVASADGSALAKIGSTT-MLAAIKMEVMTPSLESPDEGCV 93
+IR D RS R + G ++ +GS ++G TT +LA IK+E+ + E+ E
Sbjct: 20 NIRNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKLELESYDAETEKEPKQ 79
Query: 94 SIDFHMP---PICSPLVRPGRPAEAAPVVAK-QLSDTISSSGMINLKELSLVGGKAAWMV 149
I+F++ S G A + A Q + + + M NL + L G W +
Sbjct: 80 PINFNVDFSANASSQFAGKGGDEYAEELSAAFQAAYSKALDIMPNLAKTQLADGYR-WKI 138
Query: 150 YLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPT--VSLDDG-KI-VMLPXXXXXXXXXXXP 205
+DI + + A S+L+ P V+ DDG K+ ++L
Sbjct: 139 NVDISVLQWDGSVSDAISIAIIGALSDLEFPEGDVAPDDGGKVRIVLKRPKVAGNVRDEN 198
Query: 206 VNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVL 251
V KL + P LT L D T EEE + + + V L
Sbjct: 199 VQVAMWKLDVMRCPLLLTISKIGTANLVDCTPEEECCIRSQLLVGL 244
>UNIPROTKB|G5EI70 [details] [associations]
symbol:MGCH7_ch7g406 "Exosome complex exonuclease RRP43"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001247 Pfam:PF01138
GO:GO:0004527 InterPro:IPR020568 SUPFAM:SSF54211 EMBL:CM000230
EMBL:CM001237 RefSeq:XP_003721099.1 ProteinModelPortal:G5EI70
EnsemblFungi:MGG_15024T0 GeneID:12984895 KEGG:mgr:MGG_15024
Uniprot:G5EI70
Length = 357
Score = 83 (34.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 19 FRRLFPLRYFERHLA--ESIRPDARSLSRA----RNTTISMGAVASADGSALAKIGSTTM 72
F +L P + +LA ++ P AR+ RA R ++ G+++ A GSA+ + G TT+
Sbjct: 19 FAKLSPHPFLLANLAPTDNSHPPARTNGRAQTESRVVNVNTGSLSHAQGSAVVRCGDTTV 78
Query: 73 LAAIKMEVMTPSLESPD 89
+ ++ E++ P P+
Sbjct: 79 ICGVRAEIL-PVASIPN 94
Score = 74 (31.1 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 34/161 (21%), Positives = 64/161 (39%)
Query: 144 KAAWMVYLDIYCXXXXXXXXXXXXXSAVAAFSNLQIPTVSLDDGKIVMLPXXXXXXXXXX 203
KA W +++D+ + +AA + ++P D+ + ++L
Sbjct: 204 KAFWTLFIDVLFISFDGNPFDVAWTAVLAALRDTKLPAAKWDEDREMVL-------CSRQ 256
Query: 204 XPVNKEKRKLTLGGIPFSLTCILHKN------------YILADPTSEEESIMETLVTVVL 251
P + L + G P + T + + ++L DP EE + + V+VV+
Sbjct: 257 APA----KPLGVSGFPVACTAAVVRRRRDDPDVAGDQYWVLVDPDRSEEELCDEFVSVVV 312
Query: 252 DSSN----QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKEL 288
DS +++SL K GG A + + L R KE+
Sbjct: 313 DSEGGDGTKILSLLKLGGTS-AGMEFINRLVTLAEGRWKEI 352
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.369 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 302 278 0.00081 115 3 11 22 0.37 34
33 0.41 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 36
No. of states in DFA: 606 (64 KB)
Total size of DFA: 169 KB (2099 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.16u 0.14s 20.30t Elapsed: 00:00:00
Total cpu time: 20.17u 0.14s 20.31t Elapsed: 00:00:00
Start: Sat May 11 07:38:10 2013 End: Sat May 11 07:38:10 2013