BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022140
(302 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255582593|ref|XP_002532079.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
gi|223528261|gb|EEF30313.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
Length = 303
Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust.
Identities = 246/303 (81%), Positives = 273/303 (90%), Gaps = 1/303 (0%)
Query: 1 MGLPNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASAD 60
MGLPN S DLS+EME DAFRRLFPL + ERHLAESIRPD RSL RAR+TT+++GAV SAD
Sbjct: 1 MGLPNVSGDLSTEMEADAFRRLFPLLFHERHLAESIRPDGRSLGRARDTTLALGAVVSAD 60
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVA 120
GSA+AKIGSTTM+AAIKMEVMTPS ESPDEGC++IDFHMPPICSPLVRPGRPAEAAPVV+
Sbjct: 61 GSAIAKIGSTTMMAAIKMEVMTPSSESPDEGCIAIDFHMPPICSPLVRPGRPAEAAPVVS 120
Query: 121 KQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP 180
KQLSDTI SS MI+LKELSLV GKAAWM YLDIYCLDADG+LFDAAL SAVAAF+NLQIP
Sbjct: 121 KQLSDTIMSSAMIDLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALFSAVAAFTNLQIP 180
Query: 181 TVSL-DDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEE 239
VSL DDGK+V++ +E + EKE VNKEKRKLTL +PFSLTC+LHKNYILADPT+EE
Sbjct: 181 IVSLNDDGKVVVVSDENEGGKREKEAVNKEKRKLTLRSLPFSLTCVLHKNYILADPTAEE 240
Query: 240 ESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
ESIMETLVTVVLDSS +LVS YKPGG VLAYTSAVQDC+ALTRQRVKEL IL+EA+SGM
Sbjct: 241 ESIMETLVTVVLDSSARLVSFYKPGGPVLAYTSAVQDCVALTRQRVKELQNILDEALSGM 300
Query: 300 EID 302
+ID
Sbjct: 301 QID 303
>gi|224138050|ref|XP_002322717.1| predicted protein [Populus trichocarpa]
gi|222867347|gb|EEF04478.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 252/319 (78%), Positives = 275/319 (86%), Gaps = 21/319 (6%)
Query: 1 MGLPNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASAD 60
MG+P+AS DLSSEMEVDAFR LFPLRYFERHL+ESIRPDAR L RAR+TT+++GAVASA
Sbjct: 1 MGVPDASGDLSSEMEVDAFRHLFPLRYFERHLSESIRPDARPLGRARDTTLALGAVASAH 60
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVA 120
GSALAKIGSTTMLAAIKMEVMTPS ESPDEGC++IDFHMPPICSP+VRPGRPAEAAPV++
Sbjct: 61 GSALAKIGSTTMLAAIKMEVMTPSTESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVIS 120
Query: 121 KQLSDTISS--------------------SGMINLKELSLVGGKAAWMVYLDIYCLDADG 160
KQLSDTIS SGMINLKELSLV GKAAWM YLDIYCLDADG
Sbjct: 121 KQLSDTISRQVKFSASIDSPQRLILHAEISGMINLKELSLVSGKAAWMAYLDIYCLDADG 180
Query: 161 ALFDAALLSAVAAFSNLQIPTVSL-DDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIP 219
ALFDAALLSAVAAFS+LQIP VSL DDGKIV++ EE + EKEPVNKEKRKLTL IP
Sbjct: 181 ALFDAALLSAVAAFSHLQIPIVSLNDDGKIVLVSEEDEGAKLEKEPVNKEKRKLTLSSIP 240
Query: 220 FSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIA 279
FSLTCILHKNYILADPT+EEESIMETLVTVVLDSS +LVS YKPGG+V AYTSAV+DC+A
Sbjct: 241 FSLTCILHKNYILADPTAEEESIMETLVTVVLDSSARLVSFYKPGGSVFAYTSAVKDCVA 300
Query: 280 LTRQRVKELHQILEEAISG 298
LTRQRVKEL +IL+EAIS
Sbjct: 301 LTRQRVKELQEILDEAISA 319
>gi|224090167|ref|XP_002308947.1| predicted protein [Populus trichocarpa]
gi|222854923|gb|EEE92470.1| predicted protein [Populus trichocarpa]
Length = 318
Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust.
Identities = 253/318 (79%), Positives = 277/318 (87%), Gaps = 16/318 (5%)
Query: 1 MGLPNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASAD 60
MG+P+AS DLSSEMEVDAFRRLFPLRYFERHL+ESIRPDAR L RAR+TT+++GAVASA
Sbjct: 1 MGVPDASGDLSSEMEVDAFRRLFPLRYFERHLSESIRPDARPLGRARDTTLALGAVASAH 60
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVA 120
GSALAKIGSTTMLAAIKMEVMTPS ESP+EG ++IDFHMPPICSP+VRPGRPAEAAPV++
Sbjct: 61 GSALAKIGSTTMLAAIKMEVMTPSTESPEEGSIAIDFHMPPICSPIVRPGRPAEAAPVIS 120
Query: 121 KQLSDTIS---SSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSN- 176
KQLSDTIS +SGMINLKELSLV GKAAWM YLDIYCLDADGALFDAALLSAV AFS+
Sbjct: 121 KQLSDTISRQVNSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAVGAFSHS 180
Query: 177 -----------LQIPTVSL-DDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTC 224
+QIP VSL DDGKIV++ EE E+EPVNKEKRKLTL IPFSLTC
Sbjct: 181 AFIYYRSLICAVQIPIVSLNDDGKIVLVSEEDDGTKLEEEPVNKEKRKLTLSSIPFSLTC 240
Query: 225 ILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQR 284
ILHKNYILADPT+EEESIMETLVTVVLDSS++LVS YKPGG VLA TSAVQDC+ALTRQR
Sbjct: 241 ILHKNYILADPTAEEESIMETLVTVVLDSSSRLVSFYKPGGPVLAQTSAVQDCVALTRQR 300
Query: 285 VKELHQILEEAISGMEID 302
VKEL IL+E ISGMEID
Sbjct: 301 VKELQDILDETISGMEID 318
>gi|356526509|ref|XP_003531860.1| PREDICTED: exosome complex component RRP43-like [Glycine max]
Length = 302
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 245/303 (80%), Positives = 273/303 (90%), Gaps = 2/303 (0%)
Query: 1 MGLPNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASAD 60
MGLPN SEDLSSEMEVDAFRRLFPLRYFERHLAESIRPD R L +AR T+I +GAVASA+
Sbjct: 1 MGLPNVSEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDGRPLGKARETSIFLGAVASAN 60
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVA 120
GSAL KIGSTT+L AIKMEVMTPSLESPDEGC++IDFHMPPICSP+VRPGRPAEA+PVV+
Sbjct: 61 GSALVKIGSTTILTAIKMEVMTPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVS 120
Query: 121 KQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP 180
KQLSDTISSS MI+LKELSLV GKAAWM YLDIYCLDADGALFDAALLSAVA+ S+LQIP
Sbjct: 121 KQLSDTISSSKMIDLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAVASLSHLQIP 180
Query: 181 TVSL-DDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEE 239
V++ DDGKIV++ EE ++ E+EPVNKEKRKLTL IPFSLTCILHKNYILADPT+EE
Sbjct: 181 VVAMNDDGKIVLVSEEDGQKR-EQEPVNKEKRKLTLRSIPFSLTCILHKNYILADPTAEE 239
Query: 240 ESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
ESIMET VTVVLD+S QL+SLYKPGG VLAYTSA+QDC ALTRQRVKEL L++A S M
Sbjct: 240 ESIMETHVTVVLDTSGQLISLYKPGGPVLAYTSAIQDCAALTRQRVKELKSFLDKANSAM 299
Query: 300 EID 302
E++
Sbjct: 300 EVE 302
>gi|356552650|ref|XP_003544676.1| PREDICTED: exosome complex component RRP43-like [Glycine max]
Length = 299
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 239/302 (79%), Positives = 266/302 (88%), Gaps = 6/302 (1%)
Query: 1 MGLPNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASAD 60
MGL NASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPD R L +AR T+I +GAVASA+
Sbjct: 1 MGLSNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDGRPLGKARETSIFLGAVASAN 60
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVA 120
GSAL KIGSTTML AIKMEVMTPSLESPDEGC++IDFHMPPICSP+VRPGRPAEA+PVV+
Sbjct: 61 GSALVKIGSTTMLTAIKMEVMTPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVS 120
Query: 121 KQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP 180
KQLSDTISSS MI+LKELSLVGGKAAWM YLDIYCLDADGALFDAAL+SAVAA S+LQIP
Sbjct: 121 KQLSDTISSSRMIDLKELSLVGGKAAWMAYLDIYCLDADGALFDAALISAVAALSHLQIP 180
Query: 181 TVSL-DDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEE 239
V++ DDGKIV++ E + +PVNKEKRKLTL IPFSLTCILHKNYILADPT+EE
Sbjct: 181 AVAMNDDGKIVLVSGEDGQ-----KPVNKEKRKLTLRSIPFSLTCILHKNYILADPTAEE 235
Query: 240 ESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
ESIMET VT+VLD+S QL+SLYKPGG LAYTSA+QDC+ LT QRVKEL L++ S M
Sbjct: 236 ESIMETHVTIVLDTSGQLISLYKPGGPALAYTSAIQDCVGLTGQRVKELKSYLDKENSAM 295
Query: 300 EI 301
E+
Sbjct: 296 EV 297
>gi|449463354|ref|XP_004149399.1| PREDICTED: exosome complex component RRP43-like [Cucumis sativus]
gi|449503802|ref|XP_004162184.1| PREDICTED: exosome complex component RRP43-like [Cucumis sativus]
Length = 304
Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust.
Identities = 245/304 (80%), Positives = 278/304 (91%), Gaps = 2/304 (0%)
Query: 1 MGLPNA-SEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASA 59
MGLPNA S DLSS+MEVDAFRRLFP++++ERHL ESIRPD RSL +AR+TTI++G V+SA
Sbjct: 1 MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSA 60
Query: 60 DGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVV 119
+GSALAKIGSTTMLAAIKMEVMTPS+ESPDEGC+++DFHMPP+CSP+VRPGRPAEAAPV+
Sbjct: 61 NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120
Query: 120 AKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQI 179
+KQLSDTISSSGMI+L+ELSLV GKAAWM YLDIYCLDADG+LFDAALLSA AAFS+LQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
Query: 180 PTVSL-DDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSE 238
P V+L DDGK+V + EE+ EN EKEPVNKE RKL L IPFSLTC+LHK YILADPT+E
Sbjct: 181 PVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAE 240
Query: 239 EESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISG 298
EES+MET+VTVVLDSS QLVS YKPGG+VLAYTSAVQDCIALTRQR KEL IL+EAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 300
Query: 299 MEID 302
MEID
Sbjct: 301 MEID 304
>gi|83283957|gb|ABC01886.1| 3'-5'-exoribonuclease/RNA binding protein-like protein [Solanum
tuberosum]
Length = 314
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/302 (76%), Positives = 259/302 (85%), Gaps = 1/302 (0%)
Query: 1 MGLPNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASAD 60
M N S DLSSEMEVDAFRRLFPLRY E HL +S+RPDAR L AR+TT+++GAVASAD
Sbjct: 1 MAAANGSSDLSSEMEVDAFRRLFPLRYHEHHLLKSVRPDARKLGSARDTTLALGAVASAD 60
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVA 120
GSALAKIGSTTMLAAIKMEVMTP++E PDEG ++I+FHMPPICSPLVRPGRPAEAA V++
Sbjct: 61 GSALAKIGSTTMLAAIKMEVMTPTVECPDEGSIAIEFHMPPICSPLVRPGRPAEAASVIS 120
Query: 121 KQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP 180
KQLSDTI SSGMI+LKEL LVGGKAAWM YLDIYCLDADGALFD ALLSAVAAFS+L IP
Sbjct: 121 KQLSDTILSSGMIDLKELCLVGGKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHLNIP 180
Query: 181 TVSL-DDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEE 239
VSL DDG+IV++ E+ EKEPVN EKRKL L +PFSLTCILHKNYILADPT+EE
Sbjct: 181 VVSLNDDGRIVLVSEDTVRLKLEKEPVNTEKRKLKLNSLPFSLTCILHKNYILADPTAEE 240
Query: 240 ESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
E IMET+VTVVLDSS+QLVSL KPGG VL++TS +QDCI L R+R KEL +L EAIS M
Sbjct: 241 EPIMETIVTVVLDSSHQLVSLNKPGGPVLSHTSVIQDCIGLARRRAKELQSVLNEAISDM 300
Query: 300 EI 301
E+
Sbjct: 301 EV 302
>gi|356568754|ref|XP_003552575.1| PREDICTED: exosome complex component RRP43-like [Glycine max]
Length = 301
Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/302 (77%), Positives = 271/302 (89%), Gaps = 2/302 (0%)
Query: 1 MGLPNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASAD 60
MGLPN SEDLSSE+EVDAF+R+FPLRYFERHLAESIR D R L +AR T+I +GAVA A+
Sbjct: 1 MGLPNVSEDLSSEVEVDAFKRIFPLRYFERHLAESIRADGRPLGKARETSIFLGAVAFAN 60
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVA 120
GSAL KIGSTTML AIKME+MTPSLESPDEGC++IDFHMPPICSP+VRPGRPAEA+P+V+
Sbjct: 61 GSALVKIGSTTMLTAIKMEIMTPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPMVS 120
Query: 121 KQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP 180
KQLS+TISSS M +LKELSLV GKAAWM YLDIYCLDADGALFDAALLSA+AA S+LQIP
Sbjct: 121 KQLSNTISSSRMTDLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAIAALSHLQIP 180
Query: 181 TVSL-DDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEE 239
++++ DDGKIV++ +E ++ ++ EPVNKEKRKLTL IPFSLTCILHKNYILADPT+EE
Sbjct: 181 SIAMNDDGKIVLVSDEDGQKRAQ-EPVNKEKRKLTLRSIPFSLTCILHKNYILADPTAEE 239
Query: 240 ESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
ESIMET VTVVLD+S QL+SLYKPGG VLAYTSA+QDC ALTRQRVKEL+ L++A S M
Sbjct: 240 ESIMETHVTVVLDTSGQLISLYKPGGPVLAYTSAIQDCAALTRQRVKELNNFLDKANSAM 299
Query: 300 EI 301
E+
Sbjct: 300 EV 301
>gi|83283987|gb|ABC01901.1| 3'-5'-exoribonuclease/RNA binding-like protein [Solanum tuberosum]
Length = 303
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/303 (73%), Positives = 260/303 (85%), Gaps = 1/303 (0%)
Query: 1 MGLPNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASAD 60
M N S DL SEMEVDAFRRLFPLRY E+HL +S+RPDAR L AR+TT+++GAVASA+
Sbjct: 1 MAAANGSSDLYSEMEVDAFRRLFPLRYHEQHLLKSVRPDARKLGSARDTTLALGAVASAE 60
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVA 120
GSALAKIGSTTMLAAIKME+MTP++E PDEG ++I+FHMPPICSPLVRPGRPAE A V++
Sbjct: 61 GSALAKIGSTTMLAAIKMEIMTPTVECPDEGSIAIEFHMPPICSPLVRPGRPAEVASVIS 120
Query: 121 KQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP 180
KQLSDTI SSGMI+LKEL LVGGKAAWM YLDIYCLDADG+LFDAALLS VAAFS+L IP
Sbjct: 121 KQLSDTILSSGMIDLKELCLVGGKAAWMAYLDIYCLDADGSLFDAALLSTVAAFSHLNIP 180
Query: 181 TVSLD-DGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEE 239
VSL+ DG+IV++ E+ + EK+PVN EKRKL L PFSLTC+LHKNYILADPT+EE
Sbjct: 181 VVSLNEDGRIVLVSEDNIQLKLEKQPVNTEKRKLKLNSPPFSLTCLLHKNYILADPTAEE 240
Query: 240 ESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
ESIMET VTVVLDSS QLVSLYKPGG V A+TS +QDC+AL ++RVKEL +L EAIS M
Sbjct: 241 ESIMETAVTVVLDSSYQLVSLYKPGGPVHAHTSVIQDCVALAKRRVKELQSVLNEAISDM 300
Query: 300 EID 302
E++
Sbjct: 301 EVE 303
>gi|225441838|ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-like [Vitis vinifera]
Length = 303
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/299 (80%), Positives = 268/299 (89%), Gaps = 1/299 (0%)
Query: 5 NASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSAL 64
N S DLSSEMEVDAFRRLFPLRY ER L +SIRPDAR L RAR+T++++GAVASADGSAL
Sbjct: 5 NVSGDLSSEMEVDAFRRLFPLRYHERFLLDSIRPDARPLGRARDTSLALGAVASADGSAL 64
Query: 65 AKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLS 124
AKIG TTMLAA+KMEVMTP ESPDEG ++I+F+MPPICSPLVRPGRPAE APVV+KQLS
Sbjct: 65 AKIGCTTMLAAVKMEVMTPPKESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSKQLS 124
Query: 125 DTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL 184
DTI SSGMINLKELSLV GKAAWM YLDIYCLDADG+LFDAALL+AVAAFS+L+IP VSL
Sbjct: 125 DTILSSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSHLRIPVVSL 184
Query: 185 D-DGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIM 243
+ +G++V++ EE +E SEKEPVNK KRKLTL +PFSLTCILHKNYILADPT+EEESIM
Sbjct: 185 NEEGRVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYILADPTAEEESIM 244
Query: 244 ETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
ETLVTVVLDSS QLVSLYKPGG VLAY SAVQDCIALTRQRVKEL IL EAIS ME+D
Sbjct: 245 ETLVTVVLDSSGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSILNEAISDMEVD 303
>gi|297837509|ref|XP_002886636.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297332477|gb|EFH62895.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 302
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/306 (71%), Positives = 265/306 (86%), Gaps = 8/306 (2%)
Query: 1 MGLPNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASAD 60
MGL ++S+DLS+EMEVDAFRR+FPLR+FERHL+ES+RPD R L +AR+T +++G V++AD
Sbjct: 1 MGLQDSSQDLSTEMEVDAFRRIFPLRFFERHLSESLRPDGRQLGKARDTIVNLGLVSTAD 60
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVA 120
GSALAKIGSTTMLAAI+MEVMTPS +SPDEGC++++FHMPPICSP VRPGRPA+AAPV++
Sbjct: 61 GSALAKIGSTTMLAAIRMEVMTPSTDSPDEGCIALEFHMPPICSPTVRPGRPADAAPVIS 120
Query: 121 KQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP 180
K+LSDTI SSGMI+LKEL LV GKAAWM YLDIYCLDADGALFDAALLSAVAAFSNLQIP
Sbjct: 121 KRLSDTILSSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLSAVAAFSNLQIP 180
Query: 181 TVSL-DDGKIVMLPEEQKEEN---SEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPT 236
V+L D+G+IV + + ++N +EKE VNKEKRKLTL IPFSLTCILHK YILADPT
Sbjct: 181 VVALNDNGRIVAITGGKDQDNASITEKEAVNKEKRKLTLKNIPFSLTCILHKTYILADPT 240
Query: 237 SEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+EEESIM+TLVTVVLDSS+Q+VS YK GG LAY+ A++ C+ L R+R KE+ QIL E
Sbjct: 241 TEEESIMDTLVTVVLDSSDQMVSFYKSGGTALAYSPAIKSCVELARKRAKEVKQILGE-- 298
Query: 297 SGMEID 302
M+ID
Sbjct: 299 --MDID 302
>gi|297739657|emb|CBI29839.3| unnamed protein product [Vitis vinifera]
Length = 311
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 242/307 (78%), Positives = 268/307 (87%), Gaps = 9/307 (2%)
Query: 5 NASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSAL 64
N S DLSSEMEVDAFRRLFPLRY ER L +SIRPDAR L RAR+T++++GAVASADGSAL
Sbjct: 5 NVSGDLSSEMEVDAFRRLFPLRYHERFLLDSIRPDARPLGRARDTSLALGAVASADGSAL 64
Query: 65 AKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLS 124
AKIG TTMLAA+KMEVMTP ESPDEG ++I+F+MPPICSPLVRPGRPAE APVV+KQLS
Sbjct: 65 AKIGCTTMLAAVKMEVMTPPKESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSKQLS 124
Query: 125 DTI--------SSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSN 176
DTI S SGMINLKELSLV GKAAWM YLDIYCLDADG+LFDAALL+AVAAFS+
Sbjct: 125 DTILRHVNVVTSFSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSH 184
Query: 177 LQIPTVSLD-DGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADP 235
L+IP VSL+ +G++V++ EE +E SEKEPVNK KRKLTL +PFSLTCILHKNYILADP
Sbjct: 185 LRIPVVSLNEEGRVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYILADP 244
Query: 236 TSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEA 295
T+EEESIMETLVTVVLDSS QLVSLYKPGG VLAY SAVQDCIALTRQRVKEL IL EA
Sbjct: 245 TAEEESIMETLVTVVLDSSGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSILNEA 304
Query: 296 ISGMEID 302
IS ME+D
Sbjct: 305 ISDMEVD 311
>gi|15218985|ref|NP_176216.1| 3' exoribonuclease domain 1-containing protein [Arabidopsis
thaliana]
gi|4249388|gb|AAD14485.1| Similar to gb|AF025438 Opa-interacting protein (OIP2) from Homo
sapiens [Arabidopsis thaliana]
gi|28416659|gb|AAO42860.1| At1g60080 [Arabidopsis thaliana]
gi|110735926|dbj|BAE99938.1| hypothetical protein [Arabidopsis thaliana]
gi|332195536|gb|AEE33657.1| 3' exoribonuclease domain 1-containing protein [Arabidopsis
thaliana]
Length = 302
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 226/306 (73%), Positives = 270/306 (88%), Gaps = 8/306 (2%)
Query: 1 MGLPNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASAD 60
MG+P+A++DLS+EMEVDAFRR+FPLR+FERHL+ES+RPD R L +AR+T +++G V++AD
Sbjct: 1 MGIPDAAQDLSTEMEVDAFRRIFPLRFFERHLSESLRPDGRQLGKARDTIVNLGLVSTAD 60
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVA 120
GSALAKIGSTTMLAAI+MEVMTPS +SPDEGC++I+FHMPPICSP VRPGRPAEAAPV++
Sbjct: 61 GSALAKIGSTTMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVIS 120
Query: 121 KQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP 180
K+LSDTI SSGMI+LKEL LV GKAAWM YLDIYCLDADGALFDAALL+AVAAFSNLQIP
Sbjct: 121 KRLSDTILSSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQIP 180
Query: 181 TVSL-DDGKIVMLPEEQKEEN---SEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPT 236
V+L D+G+IV + E+ ++N +EKE VNKEKRKLTL IPFSLTCILHKNYILADPT
Sbjct: 181 IVALNDNGRIVAVTGEKDQDNALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYILADPT 240
Query: 237 SEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+EEESIM+TLVTVVLDSS+Q+VS YK GGA LAY+SA++ C+ L R+R KEL QIL E
Sbjct: 241 TEEESIMDTLVTVVLDSSDQMVSFYKSGGAALAYSSAIKSCVELARKRAKELKQILGE-- 298
Query: 297 SGMEID 302
M+ID
Sbjct: 299 --MDID 302
>gi|357152306|ref|XP_003576076.1| PREDICTED: exosome complex component RRP43-like [Brachypodium
distachyon]
Length = 307
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/299 (60%), Positives = 240/299 (80%), Gaps = 4/299 (1%)
Query: 5 NASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSAL 64
AS L+ EMEV+A+RRLFPL + ERHL ES+RPDAR L+ AR TT+++GAV+SA GSAL
Sbjct: 9 TASGGLAGEMEVEAYRRLFPLAFLERHLRESVRPDARRLAEARPTTVALGAVSSAHGSAL 68
Query: 65 AKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLS 124
++G T MLA+IK+EVM+P E+PDEG V+++FHMPPICSPLVRPGRPAE APV++K L
Sbjct: 69 IRLGDTAMLASIKLEVMSPPTETPDEGSVAVEFHMPPICSPLVRPGRPAEMAPVLSKALE 128
Query: 125 DTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL 184
D + SSGMINLKEL L+ GKA+W+ YLD+YCL+ADG+LFDAAL+SAVAAF++L+IP VS+
Sbjct: 129 DVLMSSGMINLKELCLISGKASWLAYLDVYCLNADGSLFDAALISAVAAFTHLEIPLVSV 188
Query: 185 -DDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIM 243
DDG++ + E ++ E VN+EKRKLTL IPF+LTC LHK+ +LADPT+EEESI+
Sbjct: 189 GDDGRVFTV--GGNEGKTKYELVNREKRKLTLKDIPFALTCALHKDNVLADPTAEEESII 246
Query: 244 ETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
ET VTV LDSS++LVS+ KPGG V + + ++ CI L ++R +L +IL +++ ME+D
Sbjct: 247 ETFVTVALDSSDRLVSIQKPGGGVTSMAT-IKTCITLAKERRHKLQEILMDSVEAMEVD 304
>gi|326508906|dbj|BAJ86846.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/294 (61%), Positives = 239/294 (81%), Gaps = 4/294 (1%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
L+ EMEV+A+RRLFPL + ERHL ES+RPDAR L+ AR TT+++GAV+SA GSAL ++G
Sbjct: 13 LAGEMEVEAYRRLFPLAFLERHLRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGD 72
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T MLA+IK+EVM+P E+PD+G V+++FHMPPICSPLVRPGRPAEAAPV++K L D + S
Sbjct: 73 TAMLASIKLEVMSPPAETPDQGSVAVEFHMPPICSPLVRPGRPAEAAPVISKALEDVLMS 132
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL-DDGK 188
SGM+NLKEL L+ GKA+W+ YLD+YCL+ADG+LFDAAL+S VAAF++L+IP VS+ DDG+
Sbjct: 133 SGMLNLKELCLISGKASWVAYLDVYCLNADGSLFDAALISVVAAFTHLEIPLVSVGDDGR 192
Query: 189 IVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVT 248
+ + E ++ E VN+EKRKLTLG IPF LTC LHK+ IL DPT+EEESI+ET VT
Sbjct: 193 VFTV--GGNEGKTKYELVNREKRKLTLGDIPFPLTCALHKDSILVDPTAEEESIIETSVT 250
Query: 249 VVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
VVLDSS +LVS+ KPGG V + +A++ CI L ++R ++L +IL ++I ME+D
Sbjct: 251 VVLDSSGRLVSIQKPGGGVTSM-AAIKACIGLAKERGQKLKEILTDSIEAMEVD 303
>gi|108864299|gb|ABG22460.1| 3' exoribonuclease family domain 1-containing protein, putative,
expressed [Oryza sativa Japonica Group]
gi|215706902|dbj|BAG93362.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215736842|dbj|BAG95771.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218185641|gb|EEC68068.1| hypothetical protein OsI_35924 [Oryza sativa Indica Group]
gi|222615895|gb|EEE52027.1| hypothetical protein OsJ_33746 [Oryza sativa Japonica Group]
Length = 306
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/294 (60%), Positives = 241/294 (81%), Gaps = 4/294 (1%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
L+ EMEV+A+RRLFPL + ERHL ES+RPDAR + AR TT+++ AV+SA GSAL ++G
Sbjct: 13 LAGEMEVEAYRRLFPLAFLERHLRESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGD 72
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T MLA+IK+EVM+PS E+PDEG ++++FHMPPICSPLVRPGRPAE APV++K L D + S
Sbjct: 73 TAMLASIKLEVMSPSGEAPDEGSIAVEFHMPPICSPLVRPGRPAEVAPVISKNLEDILMS 132
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL-DDGK 188
SGM+NLKEL L+ GKA+W+ YLD+YCL+ADG+LFDAAL+SAVAAF++L+IP VS+ DDG+
Sbjct: 133 SGMLNLKELCLISGKASWLAYLDVYCLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGR 192
Query: 189 IVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVT 248
+ + E ++ E VN+EKRKLT+ +PFSLTC LHK+ +LADPT+EEESI+ET VT
Sbjct: 193 VFTV--GGNEGKAKYELVNREKRKLTITNVPFSLTCALHKDNVLADPTAEEESIIETSVT 250
Query: 249 VVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
+VLDSS+Q+VS+ KPGGAV + T+ +++CI+L + R ++L +IL + + ME+D
Sbjct: 251 IVLDSSDQIVSIQKPGGAVTSMTT-IKECISLAKDRRRKLREILMDNVEAMEVD 303
>gi|212721556|ref|NP_001131768.1| exosome complex exonuclease RRP43 [Zea mays]
gi|194692484|gb|ACF80326.1| unknown [Zea mays]
gi|195623954|gb|ACG33807.1| exosome complex exonuclease RRP43 [Zea mays]
gi|414869688|tpg|DAA48245.1| TPA: exosome complex exonuclease RRP43 [Zea mays]
Length = 306
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/300 (59%), Positives = 241/300 (80%), Gaps = 4/300 (1%)
Query: 4 PNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSA 63
P A+ ++ EMEV+A+RRLFP+ + ERHL ES+R DAR L AR TT+++GAV+SA GSA
Sbjct: 7 PAAASGVAGEMEVEAYRRLFPVAFLERHLGESVRIDARRLREARPTTVALGAVSSAHGSA 66
Query: 64 LAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQL 123
LA++G T MLA++K+EVM+P E PDEG V+++FHMPPICSPLVRPGRP + APV++K L
Sbjct: 67 LARLGDTAMLASVKLEVMSPPAEHPDEGSVAVEFHMPPICSPLVRPGRPTDVAPVISKAL 126
Query: 124 SDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS 183
D ++SSGM+NLK+L L+ GKA+W+ YLDIYCL+ADG+LFDAAL+SAVAAF++L+IP VS
Sbjct: 127 EDVLTSSGMLNLKDLCLITGKASWLAYLDIYCLNADGSLFDAALISAVAAFTHLEIPLVS 186
Query: 184 L-DDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESI 242
+ DDG++ + + ++ E VN+EKRKLTLG IP SLTC LHK+ ILADPTSEEESI
Sbjct: 187 VGDDGRLFTVG--GNDGKNKFELVNREKRKLTLGAIPLSLTCALHKDEILADPTSEEESI 244
Query: 243 METLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
+ET VTVV+DSS++LVSL K GGAV + +++CI+L ++R + L +IL ++I ME+D
Sbjct: 245 IETYVTVVVDSSDRLVSLQKLGGAVTCMAT-IKECISLAKERRRSLREILLDSIKAMEVD 303
>gi|294461855|gb|ADE76485.1| unknown [Picea sitchensis]
Length = 302
Score = 367 bits (941), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 178/294 (60%), Positives = 246/294 (83%), Gaps = 3/294 (1%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
L+ E+EV+AFRRL+PL+++ERHL +++RPDAR L RAR T++++G V +ADGSA+AKIG
Sbjct: 7 LAGEIEVEAFRRLYPLQFYERHLNDNVRPDARPLGRARATSLALGTVPTADGSAMAKIGH 66
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
TTMLA +K+EVMTP+ E+ DEG +++DF MPPICSP VRPGRP +AA V+++QLS+ ++S
Sbjct: 67 TTMLAGVKLEVMTPAAEALDEGRIAVDFQMPPICSPDVRPGRPVDAAAVISEQLSNVLAS 126
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL-DDGK 188
SG+INLKELS+ G+AAWM YLDIYCLDADGALFDAALL+A+ AF++L+ P VS+ ++GK
Sbjct: 127 SGVINLKELSISKGQAAWMAYLDIYCLDADGALFDAALLAAIGAFAHLRFPAVSMTEEGK 186
Query: 189 IVMLPEEQ--KEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETL 246
++ L + ++ N E+ V +++++LTLG +PFSLTC+L+K +ILADPT+EEES+ +T
Sbjct: 187 VIPLSGDTVLEDGNKEQPKVQEQRQQLTLGKVPFSLTCMLYKKHILADPTAEEESVFQTT 246
Query: 247 VTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
+TVVLD S +LVS YKPGG+ LA TS +QDC+ALT+ RVKEL +IL+EA+S ME
Sbjct: 247 ITVVLDPSGRLVSFYKPGGSALASTSTIQDCVALTKYRVKELQKILDEALSEME 300
>gi|223945461|gb|ACN26814.1| unknown [Zea mays]
gi|413921676|gb|AFW61608.1| exosome complex exonuclease RRP43 [Zea mays]
Length = 306
Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 178/300 (59%), Positives = 236/300 (78%), Gaps = 4/300 (1%)
Query: 4 PNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSA 63
P A+ ++ EMEV+A+RRLFP+ + ERHL ES+R DAR L AR TT+++GAV+SA GSA
Sbjct: 7 PAAAIGVAGEMEVEAYRRLFPVAFLERHLGESVRIDARRLREARTTTVALGAVSSAHGSA 66
Query: 64 LAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQL 123
L ++G T MLA++K+EVM+PS E PDEG VS++FHMPPICSPLVRPGR AE APV++K L
Sbjct: 67 LVRVGDTAMLASVKLEVMSPSAEYPDEGSVSVEFHMPPICSPLVRPGRSAEVAPVISKAL 126
Query: 124 SDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS 183
D + SS M+NLK+L L+ GKA+W+ YLDIYCL+ADG+LFDAAL+SAVAAF++L+IP VS
Sbjct: 127 EDVLMSSRMLNLKDLCLITGKASWLAYLDIYCLNADGSLFDAALISAVAAFTHLEIPLVS 186
Query: 184 L-DDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESI 242
+ DDGK+ + + ++ E VN+EKRKLTLG IP SLTC LHK IL DPTSEEESI
Sbjct: 187 VGDDGKLFTVG--GNDGKNKFELVNREKRKLTLGDIPLSLTCALHKGSILTDPTSEEESI 244
Query: 243 METLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
+ET VTVV+DSS++LVSL K GG V + + +++CI+L ++R L +IL +++ ME+D
Sbjct: 245 IETYVTVVVDSSDRLVSLQKVGGTVTSMAT-IKECISLAKERRLRLREILIDSVKAMEVD 303
>gi|226494746|ref|NP_001148711.1| exosome complex exonuclease RRP43 [Zea mays]
gi|195621578|gb|ACG32619.1| exosome complex exonuclease RRP43 [Zea mays]
Length = 306
Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 177/300 (59%), Positives = 236/300 (78%), Gaps = 4/300 (1%)
Query: 4 PNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSA 63
P A+ ++ EMEV+A+RRLFP+ + ERHL ES+R DAR L AR TT+++GAV+SA GSA
Sbjct: 7 PAAAIGVAGEMEVEAYRRLFPVAFLERHLGESVRIDARRLREARTTTVALGAVSSAHGSA 66
Query: 64 LAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQL 123
L ++G T MLA++K+EVM+PS E PDEG VS++FHMPPICSPLVRPGR AE APV++K L
Sbjct: 67 LVRVGDTAMLASVKLEVMSPSAEYPDEGSVSVEFHMPPICSPLVRPGRSAEVAPVISKAL 126
Query: 124 SDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS 183
D + SS M+NLK+L L+ GKA+W+ YLDIYCL+ADG+LFDAAL+SAV+AF++L+IP VS
Sbjct: 127 EDVLMSSRMLNLKDLCLITGKASWLAYLDIYCLNADGSLFDAALISAVSAFTHLEIPLVS 186
Query: 184 L-DDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESI 242
+ DDGK+ + + ++ E VN+EKRKLTLG IP SLTC LHK IL DPTSEEESI
Sbjct: 187 VGDDGKLFTVG--GNDGKNKFELVNREKRKLTLGDIPLSLTCALHKGCILTDPTSEEESI 244
Query: 243 METLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
+ET VTVV+DSS++LVSL K GG V + + +++CI+L ++R L +IL +++ ME+D
Sbjct: 245 IETYVTVVVDSSDRLVSLQKVGGTVTSMAT-IKECISLAKERRLRLREILIDSVKAMEVD 303
>gi|242082071|ref|XP_002445804.1| hypothetical protein SORBIDRAFT_07g026060 [Sorghum bicolor]
gi|241942154|gb|EES15299.1| hypothetical protein SORBIDRAFT_07g026060 [Sorghum bicolor]
Length = 306
Score = 363 bits (931), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 176/294 (59%), Positives = 236/294 (80%), Gaps = 4/294 (1%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++ EMEV+A+RRLFP+ + ERHL ES+R DAR L AR TTI++GAV+SA GSAL ++G
Sbjct: 13 VAGEMEVEAYRRLFPVAFLERHLGESVRIDARRLREARPTTIALGAVSSAHGSALVRLGD 72
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T MLA++K+EVM+P E PDEG V+++FHMPPICSPLVRPGR AE APV++K L D + S
Sbjct: 73 TAMLASVKLEVMSPPAEHPDEGSVAVEFHMPPICSPLVRPGRSAEVAPVISKALEDVLMS 132
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL-DDGK 188
SGM+NLK+L L+ GKA+W+ YLDIYCL+ADG+LFDAAL+SAVAAF++L+IP VS+ DDG+
Sbjct: 133 SGMLNLKDLCLITGKASWLAYLDIYCLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGR 192
Query: 189 IVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVT 248
+ + + ++ E VN+EKRKLTL IP SLTC LHK+ ILADPTSEEESI+ET VT
Sbjct: 193 LFTVG--GNDGKNKFELVNREKRKLTLCDIPLSLTCALHKDSILADPTSEEESIIETYVT 250
Query: 249 VVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
VV+DSS++LVSL K GGAV + + +++CI+L ++R + L +IL +++ ME+D
Sbjct: 251 VVVDSSDRLVSLQKVGGAVTSMAT-IKECISLAKERRQSLREILIDSVKAMEVD 303
>gi|115485229|ref|NP_001067758.1| Os11g0311300 [Oryza sativa Japonica Group]
gi|113644980|dbj|BAF28121.1| Os11g0311300, partial [Oryza sativa Japonica Group]
Length = 300
Score = 362 bits (930), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 170/283 (60%), Positives = 231/283 (81%), Gaps = 4/283 (1%)
Query: 21 RLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEV 80
RLFPL + ERHL ES+RPDAR + AR TT+++ AV+SA GSAL ++G T MLA+IK+EV
Sbjct: 18 RLFPLAFLERHLRESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEV 77
Query: 81 MTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSL 140
M+PS E+PDEG ++++FHMPPICSPLVRPGRPAE APV++K L D + SSGM+NLKEL L
Sbjct: 78 MSPSGEAPDEGSIAVEFHMPPICSPLVRPGRPAEVAPVISKNLEDILMSSGMLNLKELCL 137
Query: 141 VGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL-DDGKIVMLPEEQKEE 199
+ GKA+W+ YLD+YCL+ADG+LFDAAL+SAVAAF++L+IP VS+ DDG++ + E
Sbjct: 138 ISGKASWLAYLDVYCLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGRVFTV--GGNEG 195
Query: 200 NSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVS 259
++ E VN+EKRKLT+ +PFSLTC LHK+ +LADPT+EEESI+ET VT+VLDSS+Q+VS
Sbjct: 196 KAKYELVNREKRKLTITNVPFSLTCALHKDNVLADPTAEEESIIETSVTIVLDSSDQIVS 255
Query: 260 LYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
+ KPGGAV + T+ +++CI+L + R ++L +IL + + ME+D
Sbjct: 256 IQKPGGAVTSMTT-IKECISLAKDRRRKLREILMDNVEAMEVD 297
>gi|147852316|emb|CAN82224.1| hypothetical protein VITISV_011872 [Vitis vinifera]
Length = 1621
Score = 343 bits (879), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 201/305 (65%), Positives = 225/305 (73%), Gaps = 16/305 (5%)
Query: 5 NASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSAL 64
N S DLSSEMEVDAFRRLFPLRY ER L +SIRPDAR L RAR+T++++GAVASADGSAL
Sbjct: 5 NVSGDLSSEMEVDAFRRLFPLRYHERFLLDSIRPDARPLGRARDTSLALGAVASADGSAL 64
Query: 65 AKIGSTT---MLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPG-----RPAEAA 116
AKIG T + + CV I H PG A+
Sbjct: 65 AKIGCTQNECQYGGERGLGLCGXGXLQYYLCVGIFGH-------FWGPGPHGTITNADFT 117
Query: 117 PVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSN 176
V + + SGMINLKELSLV GKAAWM YLDIYCLDADG+LFDAALL+AVAAFS+
Sbjct: 118 KAVVPYWASVLQGSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSH 177
Query: 177 LQIPTVSLDD-GKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADP 235
L+IP VSL++ G++V++ EE +E SEKEPVNK KRKLTL +PFSLTCILHKNYILADP
Sbjct: 178 LRIPVVSLNEEGRVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYILADP 237
Query: 236 TSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEA 295
T+EEESIMETLVTVVLDSS QLVSLYKPGG VLAY SAVQDCIALTRQRVKEL IL EA
Sbjct: 238 TAEEESIMETLVTVVLDSSGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSILNEA 297
Query: 296 ISGME 300
IS ME
Sbjct: 298 ISDME 302
>gi|168006598|ref|XP_001755996.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692926|gb|EDQ79281.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 319
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/294 (52%), Positives = 228/294 (77%), Gaps = 9/294 (3%)
Query: 11 SSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGST 70
S+ MEV+A++RL+PL+++ERHL +RPD R L+RAR T++++G++A+ADGSAL KIG+T
Sbjct: 14 SATMEVEAYKRLYPLQFYERHLDSDVRPDGRPLTRARPTSVNLGSIATADGSALVKIGNT 73
Query: 71 TMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSS 130
TMLA +K+EV+TPS SP++G V++DF MP ICSPLVRPGRPAEAA VV++QLS+ + SS
Sbjct: 74 TMLAGVKLEVITPSTASPNQGQVAVDFQMPSICSPLVRPGRPAEAAWVVSEQLSNALVSS 133
Query: 131 GMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL-DDGKI 189
+NL++L +V GKAAW+ Y+D+YCLDADG+L DAALL+AVAA ++LQ+P V + + G++
Sbjct: 134 NFVNLQQLCIVPGKAAWIAYVDVYCLDADGSLLDAALLAAVAALTHLQLPAVKVTETGRV 193
Query: 190 VMLPEEQKEENSE--------KEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEES 241
V L + E ++ + K +++L +P +LTC+ H+ ++LADP++EEES
Sbjct: 194 VPLKNHNGDAGQEVDSIAKKNEDQIVKSRQRLERSSMPIALTCVSHRKHLLADPSAEEES 253
Query: 242 IMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEA 295
I++ +TV++D+S +L+S YKPGGAV A ++ V+DCI LT++RV E++ I EEA
Sbjct: 254 ILQMSLTVIMDTSGRLISFYKPGGAVAATSATVKDCIELTKKRVAEVNSIFEEA 307
>gi|302795634|ref|XP_002979580.1| hypothetical protein SELMODRAFT_233365 [Selaginella moellendorffii]
gi|300152828|gb|EFJ19469.1| hypothetical protein SELMODRAFT_233365 [Selaginella moellendorffii]
Length = 291
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 148/288 (51%), Positives = 222/288 (77%), Gaps = 3/288 (1%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++ ++EVDAF+RL+P ++ ER+L S+RPD R L+R+R T++S AV+SADGSAL KIG+
Sbjct: 1 MADDVEVDAFKRLYPAQFLERYLDASVRPDGRPLTRSRPTSVSFNAVSSADGSALVKIGN 60
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
TTMLA K+E M P+ ++PD+GC+S+DF MPPICSP VRPGRPAE A V+ +QL + + S
Sbjct: 61 TTMLAGAKLETMEPAADTPDQGCLSVDFVMPPICSPRVRPGRPAEEAYVITEQLQNALLS 120
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL-DDGK 188
SG+++L+ELS+V GKAAWM+YLD+YCLDADG+L DAALL++VAA ++LQ+P + + +GK
Sbjct: 121 SGVVDLRELSIVSGKAAWMIYLDVYCLDADGSLLDAALLASVAALAHLQVPAICVRSEGK 180
Query: 189 IVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVT 248
I P + + + E + R+L LG PF+LT +++ ++ADPT+EEE+I++T +
Sbjct: 181 ITKAPPDAQASSDGIE--FTQPRRLNLGEFPFALTVAMNQKSLIADPTAEEEAILDTKMI 238
Query: 249 VVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
V+L+SS ++++L+K GG+ A T+ +QDC+AL +R K L ++LEEA+
Sbjct: 239 VILNSSQKIIALHKAGGSTTASTATIQDCLALAMRRRKTLQKVLEEAL 286
>gi|302791854|ref|XP_002977693.1| hypothetical protein SELMODRAFT_176463 [Selaginella moellendorffii]
gi|300154396|gb|EFJ21031.1| hypothetical protein SELMODRAFT_176463 [Selaginella moellendorffii]
Length = 291
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 148/288 (51%), Positives = 222/288 (77%), Gaps = 3/288 (1%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++ ++EVDAF+RL+P ++ ER+L S+RPD R L+R+R T++S AV+SADGSAL KIG+
Sbjct: 1 MADDVEVDAFKRLYPAQFLERYLDASVRPDGRPLTRSRPTSVSFNAVSSADGSALVKIGN 60
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
TTMLA K+E M P+ ++PD+GC+S+DF MPPICSP VRPGRPAE A V+ +QL + + S
Sbjct: 61 TTMLAGAKLETMEPAADTPDQGCLSVDFVMPPICSPRVRPGRPAEEAYVITEQLQNALLS 120
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL-DDGK 188
SG+++L+ELS+V GKAAWM+YLD+YCLDADG+L DAALL++VAA ++LQ+P + + +GK
Sbjct: 121 SGVVDLRELSIVSGKAAWMIYLDVYCLDADGSLLDAALLASVAALAHLQVPAICVRSEGK 180
Query: 189 IVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVT 248
I P + + + E + R+L LG PF+LT +++ ++ADPT+EEE+I++T +
Sbjct: 181 ITKAPPDAQASSDGIE--FTQPRRLNLGEFPFALTVAMNQKSLIADPTAEEEAILDTKMI 238
Query: 249 VVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
V+L+SS ++++L+K GG+ A T+ +QDC+AL +R K L ++LEEA+
Sbjct: 239 VILNSSQKIIALHKAGGSTTASTATIQDCLALAMRRRKTLQKVLEEAL 286
>gi|357436289|ref|XP_003588420.1| Exosome complex exonuclease RRP43 [Medicago truncatula]
gi|355477468|gb|AES58671.1| Exosome complex exonuclease RRP43 [Medicago truncatula]
Length = 180
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 138/166 (83%), Positives = 152/166 (91%), Gaps = 2/166 (1%)
Query: 1 MGLPNA--SEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVAS 58
M +PNA +EDLSSEMEVDAFRRLFPLRYFERHLAESIR D R L AR+T+I +GAVAS
Sbjct: 1 MSVPNAAATEDLSSEMEVDAFRRLFPLRYFERHLAESIRSDGRPLREARDTSIFLGAVAS 60
Query: 59 ADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPV 118
A+GSAL KIGSTTML AIKMEVM PSLESPDEGC++IDFHMPPICSP+VRPGRPAEA PV
Sbjct: 61 ANGSALVKIGSTTMLTAIKMEVMIPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEAEPV 120
Query: 119 VAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFD 164
V+KQLSDTI+SSGMI+L+ELSLVGGKAAWM YLDIYCLDADG+LFD
Sbjct: 121 VSKQLSDTITSSGMIDLRELSLVGGKAAWMAYLDIYCLDADGSLFD 166
>gi|194694796|gb|ACF81482.1| unknown [Zea mays]
gi|414869689|tpg|DAA48246.1| TPA: hypothetical protein ZEAMMB73_220271 [Zea mays]
Length = 218
Score = 266 bits (681), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 128/212 (60%), Positives = 172/212 (81%), Gaps = 4/212 (1%)
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
CV+++FHMPPICSPLVRPGRP + APV++K L D ++SSGM+NLK+L L+ GKA+W+ YL
Sbjct: 7 CVAVEFHMPPICSPLVRPGRPTDVAPVISKALEDVLTSSGMLNLKDLCLITGKASWLAYL 66
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSL-DDGKIVMLPEEQKEENSEKEPVNKEK 210
DIYCL+ADG+LFDAAL+SAVAAF++L+IP VS+ DDG++ + + ++ E VN+EK
Sbjct: 67 DIYCLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGRLFTVG--GNDGKNKFELVNREK 124
Query: 211 RKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAY 270
RKLTLG IP SLTC LHK+ ILADPTSEEESI+ET VTVV+DSS++LVSL K GGAV
Sbjct: 125 RKLTLGAIPLSLTCALHKDEILADPTSEEESIIETYVTVVVDSSDRLVSLQKLGGAVTCM 184
Query: 271 TSAVQDCIALTRQRVKELHQILEEAISGMEID 302
+ +++CI+L ++R + L +IL ++I ME+D
Sbjct: 185 AT-IKECISLAKERRRSLREILLDSIKAMEVD 215
>gi|255644374|gb|ACU22692.1| unknown [Glycine max]
Length = 170
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/171 (75%), Positives = 151/171 (88%), Gaps = 2/171 (1%)
Query: 132 MINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL-DDGKIV 190
M +LKELSLV GKAAWM YLDIYCLDADGALFDAALLSA+AA S+LQIP++++ DDGKIV
Sbjct: 1 MTDLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAIAALSHLQIPSIAMNDDGKIV 60
Query: 191 MLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVV 250
++ +E ++ ++ EPVNKEKRKLTL IPFSLTCILHKNYILADPT+EEESIMET VTVV
Sbjct: 61 LVSDEDGQKRAQ-EPVNKEKRKLTLRSIPFSLTCILHKNYILADPTAEEESIMETHVTVV 119
Query: 251 LDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEI 301
LD+S QL+SLYKPGG VLAYTSA+QDC ALTRQRVKEL+ L++A S ME+
Sbjct: 120 LDTSGQLISLYKPGGPVLAYTSAIQDCAALTRQRVKELNNFLDKANSAMEV 170
>gi|196005309|ref|XP_002112521.1| hypothetical protein TRIADDRAFT_25085 [Trichoplax adhaerens]
gi|190584562|gb|EDV24631.1| hypothetical protein TRIADDRAFT_25085, partial [Trichoplax
adhaerens]
Length = 266
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 171/278 (61%), Gaps = 16/278 (5%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
FR L P +++R +AE+IRPD R+ + R TT+++G++ +A+GSAL KIG+TTML IK
Sbjct: 1 FRTLRPKEFYDRFIAENIRPDRRTFKQFRKTTVNVGSITTANGSALVKIGNTTMLCGIKT 60
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E P L+SPD G + + +PP+CS RPG P E A V ++ L+D I S +INLK+L
Sbjct: 61 EFAVPKLDSPDHGYIVPNVDLPPLCSYRFRPGPPGEQAQVCSQYLADIIKSCNLINLKDL 120
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+V K AW++Y+D+ CLD DG + DA++++ +AA + + P V +D
Sbjct: 121 CIVKEKLAWVIYIDLLCLDCDGNVLDASVIAMLAALRSAKFPKVEID------------- 167
Query: 199 ENSEKEPVNK-EKRKLTLGGIPFSLTCILH-KNYILADPTSEEESIMETLVTVVLDSSNQ 256
E +K V+K E L + P S T +L KN ILADPTSEEE++ +T+ +++ +
Sbjct: 168 EEVDKPIVSKDESFSLNVNDCPISSTFVLFDKNLILADPTSEEENLSSGYLTITVNNDDG 227
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEE 294
L ++ KPGG + + + +CI L +R +++ +L +
Sbjct: 228 LSNVLKPGGRGVN-DAELNECITLAIKRARDMRDLLSK 264
>gi|302830011|ref|XP_002946572.1| hypothetical protein VOLCADRAFT_86657 [Volvox carteri f.
nagariensis]
gi|300268318|gb|EFJ52499.1| hypothetical protein VOLCADRAFT_86657 [Volvox carteri f.
nagariensis]
Length = 311
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/293 (40%), Positives = 170/293 (58%), Gaps = 5/293 (1%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
LS +++ DAF+RL+P +Y++R LAE +RPD R L RAR TI GA+ SADGSAL KIG
Sbjct: 9 LSDDVDADAFKRLYPDQYYDRFLAEGVRPDGRPLGRARAVTIGAGAITSADGSALVKIGR 68
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
TT+L +++E++ P +P +G ++++ + P S RPGR + V ++L+ + +
Sbjct: 69 TTVLGGVRLEIIRPDETAPSQGQLALNVELAPFSSQDYRPGRQPDHVSAVTEKLTSALLT 128
Query: 130 SG-MINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTV-SLDDG 187
G + L L + GKAAW LD+Y LDADG + D ALL+A AA N +IP V S +G
Sbjct: 129 GGDAVQLSSLCIAEGKAAWRASLDLYVLDADGCVLDTALLAATAALRNTRIPAVRSTREG 188
Query: 188 KIVMLPEEQKEENSEKEPVNKEKRKLT---LGGIPFSLTCILHKNYILADPTSEEESIME 244
V + T +G P LTC L++NYIL DPT+EEE +
Sbjct: 189 HYVAVGAGSSGSGGAGGDGGLVAGSPTAVGMGRCPLGLTCCLYRNYILVDPTAEEERLAA 248
Query: 245 TLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
V+VVLD +L +YK GG VLA + + C R R +EL +LE+++S
Sbjct: 249 CSVSVVLDQHGRLQGVYKAGGKVLADAATLVKCTEAARLRYRELSGLLEQSLS 301
>gi|62733253|gb|AAX95370.1| 3' exoribonuclease family, domain 1, putative [Oryza sativa
Japonica Group]
Length = 185
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 92/146 (63%), Positives = 120/146 (82%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
L+ EMEV+A+RRLFPL + ERHL ES+RPDAR + AR TT+++ AV+SA GSAL ++G
Sbjct: 13 LAGEMEVEAYRRLFPLAFLERHLRESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGD 72
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T MLA+IK+EVM+PS E+PDEG ++++FHMPPICSPLVRPGRPAE APV++K L D + S
Sbjct: 73 TAMLASIKLEVMSPSGEAPDEGSIAVEFHMPPICSPLVRPGRPAEVAPVISKNLEDILMS 132
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYC 155
SGM+NLKEL L+ GKA+W+ YL +
Sbjct: 133 SGMLNLKELCLISGKASWLAYLAYWA 158
>gi|327264085|ref|XP_003216847.1| PREDICTED: exosome complex exonuclease RRP43-like [Anolis
carolinensis]
Length = 277
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 169/283 (59%), Gaps = 13/283 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
FR + P+ Y+ R L E+ RPD R L R TTI++G++ +ADGSAL K+G+TT++ IK
Sbjct: 6 GFRTVEPVEYYRRFLKENCRPDGRDLGEFRTTTINIGSITTADGSALVKLGNTTVVCGIK 65
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P +S ++G + + +PP+CS RPG P E A ++ ++D I +S ++ ++
Sbjct: 66 AEFAAPLADSSNKGYIVPNVDLPPLCSSRFRPGPPGEEAQAASQFVADVIENSQVVMKED 125
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L +V GK AW++Y DI CLD DG L DA + + +AA N+Q+P V+++
Sbjct: 126 LCIVDGKIAWVLYCDIICLDYDGNLLDACMCAFLAALRNVQLPAVTIN------------ 173
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
EE E KEK LT+ P + + IL ++ DPT+EEE + ++T+V D +L
Sbjct: 174 EETGLAEVNLKEKIPLTIRKEPVATSFILFDTVMIVDPTAEEEDLATGMLTIVTDEEGKL 233
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
S++KPGG+ L + +QDCI+ R KE+ +++++ I ++
Sbjct: 234 CSVHKPGGSALT-GAKLQDCISRATARYKEVKKLIDKVIKSVK 275
>gi|387018402|gb|AFJ51319.1| Exosome complex exonuclease RRP43-like [Crotalus adamanteus]
Length = 276
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 170/282 (60%), Gaps = 13/282 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
AFR + PL Y+ R L E+ RPD R L R TTI++G++ +ADGSAL K+G+TT++ IK
Sbjct: 8 AFRTVEPLEYYRRFLKENCRPDGRDLGEFRTTTINIGSITTADGSALVKLGNTTVICGIK 67
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E TP+++S ++G + + +PP+CS RPG P E A ++ ++D I +S MI ++
Sbjct: 68 AEFATPTVDSSNKGYIIPNVDLPPLCSSRFRPGPPCEEAQAASQFIADIIENSQMIMKED 127
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L ++ GK W++Y DI CLD DG L DA + + +AA N+ +P V+++
Sbjct: 128 LCILDGKIVWVLYCDIICLDYDGNLLDACICAFLAALKNVLLPVVAIN------------ 175
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
E E KEK LT+ P + + +L ++ DPT+EEE + +T+V+ +++L
Sbjct: 176 AETGLVEVNLKEKNPLTIKKQPVATSFVLFDTLVVVDPTAEEEDLASGTLTIVIIENDKL 235
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
S++KPGG + + +QDCI+ + R KE+ +++++ I +
Sbjct: 236 CSVHKPGGRTIT-EAKLQDCISRAKTRHKEVQKLMDKIIKNV 276
>gi|149635838|ref|XP_001511768.1| PREDICTED: exosome complex component RRP43-like [Ornithorhynchus
anatinus]
Length = 276
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/284 (36%), Positives = 167/284 (58%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++P++G V + +PP+CS RPG P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFTAPPGDAPNKGYVVPNVDLPPLCSSRFRPGPPGEEAQVASQFINDVIENSQLIAKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG + DA + +AA N+Q+P V ++
Sbjct: 124 LCISKGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPAVVIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYIL-ADPTSEEESIMETLVTVVLDSSNQ 256
EE E K+K L + P + + + N IL DPT EEE++ +TVV+D +
Sbjct: 172 EETGLAEVNFKQKTPLNIRAYPIATSFAIFDNTILIVDPTGEEENLATGTLTVVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ LA T +QDC++ R KE+ +++E I ++
Sbjct: 232 LCCLHKPGGSALAGTK-LQDCLSRAVTRHKEVKVLMDEVIQSVK 274
>gi|354499904|ref|XP_003512044.1| PREDICTED: exosome complex component RRP43-like, partial
[Cricetulus griseus]
Length = 284
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 103/284 (36%), Positives = 168/284 (59%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
FR + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ IK
Sbjct: 12 CFRTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIK 71
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P L++PD G V + +PP+CS R G P E A V ++ ++D + +S +I ++
Sbjct: 72 AEFAAPPLDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVLENSQIIKKED 131
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 132 LCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 179
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +T+V+D +
Sbjct: 180 EETALAEVNLKKKSYLNVRTNPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTIVMDEEGK 239
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L SL+KPGG+ L + +QDC++ R KE++++L+E I M+
Sbjct: 240 LCSLHKPGGSGLT-GAKLQDCMSRAVSRHKEVNKLLDEVIQSMK 282
>gi|384248099|gb|EIE21584.1| 3'-5'-exoribonuclease/RNA binding-like protein [Coccomyxa
subellipsoidea C-169]
Length = 293
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 178/288 (61%), Gaps = 11/288 (3%)
Query: 11 SSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGST 70
S+E++ +AF+RL+P Y+ + +++S+RPD R L AR TTI + + S SAL KIG+T
Sbjct: 9 SNELQAEAFKRLYPNEYYAKFISKSLRPDGRPLGGARATTIGIHPLESTSSSALVKIGNT 68
Query: 71 TMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSS 130
T +A IK++ S + P EG ++++ M S RPGRP++AA V +Q+ + ++
Sbjct: 69 TAMAGIKLQHFAISSDQPVEGTLAVNMEMAAFASSETRPGRPSDAAQCVQEQIRTALRTA 128
Query: 131 GMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD-GKI 189
G + L+EL+ + AW V+LDIY LDADG L D LL+AVAA LQ+P V ++D G++
Sbjct: 129 GAVKLEELA-IDKSHAWAVFLDIYVLDADGCLLDVCLLAAVAALLGLQLPRVEVNDQGQV 187
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTV 249
V P +S R+ L +P +LTC L+ ++ADPTSEEE+++ +LV+
Sbjct: 188 VTKPISGSASDS---------RRFGLKAVPMALTCGLYSGSLIADPTSEEEALVASLVST 238
Query: 250 VLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
++D+S LV LYK GG A + C+ T+ R KEL +L++A++
Sbjct: 239 IVDASGSLVGLYKAGGHATADEGLLLQCMEATKLRYKELMILLKQALA 286
>gi|291226456|ref|XP_002733208.1| PREDICTED: exosome component 8-like [Saccoglossus kowalevskii]
Length = 275
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 176/283 (62%), Gaps = 14/283 (4%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
F+ P+ Y+ + L + +RPD R L R+T +++G++++A+GSAL K+G+TT++ IK
Sbjct: 5 FKTAQPVEYYRQFLKKDVRPDGRELGEIRSTIVNIGSISTAEGSALVKLGNTTVICGIKA 64
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ TP+ + P +G V + +PP+CSP RPG P+E A VV++ ++D + S M+N ++L
Sbjct: 65 ELCTPTNDEPKKGFVVPNVDLPPLCSPRFRPGPPSEQAQVVSQFIADVLKDSKMVNHEDL 124
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+ GK W++Y D+ CLD DG + DA ++S +AA N+ +P++ +D E
Sbjct: 125 CIAEGKIVWVLYCDMMCLDYDGNVIDACIISLLAALRNVALPSIEVD------------E 172
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYIL-ADPTSEEESIMETLVTVVLDSSNQL 257
E ++ + + +T+ +P S + + N IL ADPT+EEE++ +VTVV + +L
Sbjct: 173 ETAKPKLTSSTSSTMTVQSLPVSTSFAIFDNSILIADPTNEEENLATGVVTVVTNECGEL 232
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
+L+KPGG+ L+ S +Q+C+ + R E+ ++L+E + ++
Sbjct: 233 CALHKPGGSSLS-ESQIQECVKRSFSRGDEIRKLLDETFNSLD 274
>gi|344281856|ref|XP_003412693.1| PREDICTED: exosome complex component RRP43-like [Loxodonta
africana]
Length = 282
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 166/284 (58%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ IK
Sbjct: 10 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIK 69
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G + + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 70 AEFAAPPTDAPDKGYIVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 129
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG + DA+ + +AA N+Q+P V+++
Sbjct: 130 LCISQGKLAWVLYCDLICLDYDGNILDASTFALLAALKNVQLPEVNIN------------ 177
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + I ++ DPT EEE + +TVV D +
Sbjct: 178 EETALAEVNLKKKTHLNIRNYPVATSFAIFDDTLLIVDPTGEEEHLATGTLTVVTDEGGR 237
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E I M+
Sbjct: 238 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIQSMK 280
>gi|149064770|gb|EDM14921.1| exosome component 8 (predicted), isoform CRA_a [Rattus norvegicus]
Length = 276
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 166/284 (58%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P +++PD G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVIENSQIIKKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 124 LCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +TVV+D +
Sbjct: 172 EETALAEVNLKKKSYLNVRANPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++L+E I M+
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVSKLLDEVIQSMK 274
>gi|355754637|gb|EHH58538.1| Exosome complex exonuclease RRP43, partial [Macaca fascicularis]
Length = 272
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 100/283 (35%), Positives = 166/283 (58%), Gaps = 14/283 (4%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
FR + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 1 FRTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKA 60
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E P ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++L
Sbjct: 61 EFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 120
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+ GK AW++Y D+ CLD DG + DA + +AA N+Q+P V+++ E
Sbjct: 121 CISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------E 168
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
E + E K+K L + P + + + ++ DPT EEE + +T+V+D +L
Sbjct: 169 ETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKL 228
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L+KPGG+ L + +QDC++ R KE+ ++++E I M+
Sbjct: 229 CCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 270
>gi|301791884|ref|XP_002930910.1| PREDICTED: exosome complex exonuclease RRP43-like [Ailuropoda
melanoleuca]
Length = 276
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 165/284 (58%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ IK
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFAAPPTDTPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK +W++Y DI CLD DG + DA + +AA N+Q+P V+++
Sbjct: 124 LCISPGKLSWVLYCDIICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE E K+K L + P + + + ++ DPT EEE + +TVV+D +
Sbjct: 172 EETGLAEVHLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E I M+
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 274
>gi|387915884|gb|AFK11551.1| exosome complex component RRP43 [Callorhinchus milii]
Length = 291
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 169/284 (59%), Gaps = 16/284 (5%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ + L E+ RPD R L R TT+++G++ +ADGSAL K+G+TT++ IK
Sbjct: 4 GFKTVEPLEYYRKFLKENCRPDGRELGEFRTTTLNIGSITTADGSALVKLGNTTVVCGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
ME P++++P++G V + +PP+CS RPG P E A ++ ++D I +S + ++
Sbjct: 64 MEFAVPTVDAPNKGYVVPNVDLPPLCSSRFRPGPPGEQAQAASQFIADVIENSQFLQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDGKIVMLPEE 195
L + GK W+VY D+ CLD DG L DA +++ +AA N+Q+P ++S++ G + +
Sbjct: 124 LCIEKGKLVWVVYCDMMCLDYDGNLLDACIIALLAALKNVQLPPVSISVETGLAEVDMNQ 183
Query: 196 QKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSN 255
+ + N K PV F+ I + DPT+EEE++ + T+V+D +
Sbjct: 184 KNQLNIRKHPV----------ATSFA---IFDDTIFIVDPTAEEETLASGMATIVVDEED 230
Query: 256 QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
+L +++KPGG+ A +QDCI + R +E++++L E + +
Sbjct: 231 RLCAVHKPGGSG-ASGEKLQDCIVRAQTRHREVYKLLSEVMKSV 273
>gi|303286137|ref|XP_003062358.1| 3' exoribonuclease [Micromonas pusilla CCMP1545]
gi|226455875|gb|EEH53177.1| 3' exoribonuclease [Micromonas pusilla CCMP1545]
Length = 301
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 169/305 (55%), Gaps = 22/305 (7%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTML 73
ME A++RL+P Y+ + LAE RPD R L+RAR+ +++ G V SADGSAL KIG TT L
Sbjct: 1 MEAAAYKRLYPHEYYRKFLAEETRPDGRPLARARDVSVANGVVTSADGSALVKIGRTTAL 60
Query: 74 AAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMI 133
AA K+E P +PD G V + +PP+C+ RPGRP E + A+++ D + + ++
Sbjct: 61 AAAKLEPAPPEPTAPDVGVVEVTVELPPMCAASARPGRPTEESQRCARRIEDVLRDANVV 120
Query: 134 NLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD-GKIVML 192
+L++L + G AW V +D+Y LD DG + DAAL + V A + ++P V +DD GK+V
Sbjct: 121 DLRKLCIKRGVYAWRVCVDVYVLDHDGGILDAALCAVVGALKDAKVPRVDVDDRGKLVWG 180
Query: 193 PEEQKEENSEKEPVNKEKRK----------------LTLGGIPFSLTCILHKNYILADPT 236
E+ E+ P + + + + P SLT + ++ DP
Sbjct: 181 GGER-----ERRPGDADADADANGDGDASTSAAACVVDVASHPLSLTIGQYDGKLVVDPN 235
Query: 237 SEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
EEE++ME++V+VV+ LV + KPGG A S + CIA R R + ++A
Sbjct: 236 FEEEALMESVVSVVMREDGDLVCVSKPGGTREASESTLIKCIAAARLRYPGCKKAFDDAF 295
Query: 297 SGMEI 301
+E+
Sbjct: 296 DAVEV 300
>gi|355700935|gb|EHH28956.1| Exosome complex exonuclease RRP43, partial [Macaca mulatta]
Length = 272
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/283 (35%), Positives = 166/283 (58%), Gaps = 14/283 (4%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
FR + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 1 FRTVEPLEYYRRFLLENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKA 60
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E P ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++L
Sbjct: 61 EFAAPPTDAPDKGYVVPNVDLPPLCSSRFRAGPPGEEAQVASQFIADVIENSQIIQKEDL 120
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+ GK AW++Y D+ CLD DG + DA + +AA N+Q+P V+++ E
Sbjct: 121 CISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------E 168
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
E + E K+K L + P + + + ++ DPT EEE + +T+V+D +L
Sbjct: 169 ETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKL 228
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L+KPGG+ L + +QDC++ R KE+ ++++E I M+
Sbjct: 229 CCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 270
>gi|395861770|ref|XP_003803149.1| PREDICTED: exosome complex component RRP43 [Otolemur garnettii]
Length = 280
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 165/284 (58%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 8 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVK 67
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 68 AEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 127
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG + DA + +AA N+Q+P V ++
Sbjct: 128 LCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVIIN------------ 175
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +T+V+D +
Sbjct: 176 EETALAEVNLKKKSYLNIRTYPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGK 235
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KEL ++++E I M+
Sbjct: 236 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKELKKLMDEVIKSMK 278
>gi|31415882|ref|NP_852480.1| exosome complex component RRP43 [Homo sapiens]
gi|21759409|sp|Q96B26.1|EXOS8_HUMAN RecName: Full=Exosome complex component RRP43; AltName:
Full=Exosome component 8; AltName: Full=Opa-interacting
protein 2; Short=OIP-2; AltName: Full=Ribosomal
RNA-processing protein 43; AltName: Full=p9
gi|18088472|gb|AAH20773.1| Exosome component 8 [Homo sapiens]
gi|123992916|gb|ABM84060.1| exosome component 8 [synthetic construct]
gi|123999809|gb|ABM87413.1| exosome component 8 [synthetic construct]
gi|208966244|dbj|BAG73136.1| exosome component 8 [synthetic construct]
Length = 276
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/284 (34%), Positives = 166/284 (58%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E PS ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK W++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 124 LCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +T+V+D +
Sbjct: 172 EETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E I M+
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 274
>gi|122920909|pdb|2NN6|C Chain C, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 278
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/284 (34%), Positives = 166/284 (58%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 6 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVK 65
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E PS ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 66 AEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 125
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK W++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 126 LCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 173
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +T+V+D +
Sbjct: 174 EETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGK 233
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E I M+
Sbjct: 234 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 276
>gi|291408704|ref|XP_002720651.1| PREDICTED: exosome component 8 [Oryctolagus cuniculus]
Length = 276
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 166/284 (58%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ IK
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFAAPPADAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSRIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 124 LCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +TVV+D +
Sbjct: 172 EETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E I M+
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 274
>gi|73993245|ref|XP_534492.2| PREDICTED: exosome complex component RRP43 isoform 1 [Canis lupus
familiaris]
Length = 276
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 164/284 (57%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ IK
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK +W++Y DI CLD DG + DA + +AA N Q+P V+++
Sbjct: 124 LCISPGKLSWVLYCDIICLDYDGNILDACTFALLAALKNAQLPEVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE E K+K L + P + + + ++ DPT EEE + +TVV+D +
Sbjct: 172 EETGLAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E I M+
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 274
>gi|449549379|gb|EMD40344.1| hypothetical protein CERSUDRAFT_148276 [Ceriporiopsis subvermispora
B]
Length = 291
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/281 (35%), Positives = 164/281 (58%), Gaps = 17/281 (6%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTML 73
+ F+RL P Y ER L E++RPD R L R+ ++ +G++++ADGSAL ++G TT++
Sbjct: 20 LRAQTFQRLHPKAYLERFLQENVRPDGRELDEWRDVSVHVGSISTADGSALVRLGDTTIV 79
Query: 74 AAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMI 133
+K E+ P L+SP+ G + + +P ICSP +PG P E A V++ +L++ + ++G++
Sbjct: 80 CGVKAEIAEPELDSPEAGFIVPNLDLPAICSPKFKPGPPTEEAQVISDRLNEVLVTAGIV 139
Query: 134 NLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLP 193
+ L + GKAAW++Y+D C++ DG FDA LL+ VAA N ++P D
Sbjct: 140 SPSSLCIQPGKAAWVLYIDATCINYDGNAFDATLLAMVAALKNTRLPKARFD-------- 191
Query: 194 EEQKEENSEKEPVNKEKRKLTLGGIPFSLTC-ILHKNYILADPTSEEESIMETLVTVVLD 252
EE K K L +G +P ++T I ++L+DPTS EE +++T+++V +D
Sbjct: 192 ----EEAGRTVCSRKVKEPLHIGRLPTAMTFGIFDGTHVLSDPTSFEEPLLDTVLSVTVD 247
Query: 253 SSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRV----KELH 289
S LVS+ + G V+ + CI+ +QR K+LH
Sbjct: 248 ESGGLVSVTQVGLGVIGKQDILPQCISAAKQRCSILAKQLH 288
>gi|332242319|ref|XP_003270334.1| PREDICTED: exosome complex component RRP43 [Nomascus leucogenys]
Length = 276
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/284 (34%), Positives = 166/284 (58%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G + + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFAAPPTDAPDKGYIVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 124 LCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +TVV+D +
Sbjct: 172 EETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E I M+
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 274
>gi|386782149|ref|NP_001247467.1| exosome component 8 [Macaca mulatta]
gi|402901796|ref|XP_003913826.1| PREDICTED: exosome complex component RRP43 [Papio anubis]
gi|384945128|gb|AFI36169.1| exosome complex component RRP43 [Macaca mulatta]
Length = 276
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/284 (34%), Positives = 166/284 (58%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 124 LCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +T+V+D +
Sbjct: 172 EETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E I M+
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 274
>gi|403418833|emb|CCM05533.1| predicted protein [Fibroporia radiculosa]
Length = 286
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 170/295 (57%), Gaps = 21/295 (7%)
Query: 1 MGLPNASEDLSSEMEVDA-----FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGA 55
M P+ S +S+ E DA F+RL P Y ER LAE++RPD R R+ ++++G+
Sbjct: 1 MSQPSTS---TSQTEQDALRAATFQRLHPKVYLERFLAENVRPDGRGFEEWRDVSVNVGS 57
Query: 56 VASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEA 115
+++ADGSAL ++G TT++ +K E+ P L+SP +G + + +P ICSP +PG P E
Sbjct: 58 ISTADGSALVRLGDTTIVCGVKAEIAEPELDSPGDGFLVPNLDLPAICSPKFKPGPPTEE 117
Query: 116 APVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFS 175
A V++ +L++ + +SG++ L + GKA W++Y+D C++ DG FDA LL+ VAA
Sbjct: 118 AQVLSDRLNEALIASGILPTSSLCIARGKAVWVLYVDATCINYDGNAFDATLLAMVAALK 177
Query: 176 NLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTC-ILHKNYILAD 234
N Q+P + D EE K K+ L LG P S++ I ++LAD
Sbjct: 178 NTQLPEATYD------------EETGRTTCSRKVKQPLQLGRSPTSMSFGIFDSTHVLAD 225
Query: 235 PTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELH 289
PTS EE +++T ++VV+D + LVS+ + G V+ + CIA ++ ++
Sbjct: 226 PTSFEEPLLDTTLSVVVDENGDLVSVAQLGLTVVGGQDVLTQCIATAKENHSRIY 280
>gi|148703331|gb|EDL35278.1| exosome component 8, isoform CRA_f [Mus musculus]
Length = 283
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 164/283 (57%), Gaps = 14/283 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
FR + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 11 CFRTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVK 70
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P +++PD G V + +PP+CS R G P E A V ++ ++D + +S +I ++
Sbjct: 71 AEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKED 130
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 131 LCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 178
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +TVV D +
Sbjct: 179 EETALAEVNLKKKSYLNVRTNPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGK 238
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
L L+KPGG+ L + +QDC++ R KE+ ++L+E I M
Sbjct: 239 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVSKLLDEVIQSM 280
>gi|226372912|gb|ACO52081.1| Exosome complex exonuclease RRP43 [Rana catesbeiana]
Length = 272
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 161/278 (57%), Gaps = 16/278 (5%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ + L E RPD R LS R TTI++G++ +ADGSAL KIG+ T++ IK
Sbjct: 4 GFKSVEPLEYYRKFLKEKCRPDGRDLSEFRTTTINVGSITTADGSALVKIGNCTVICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E TP +++P++G + + + P+CSP RPG P E A V ++ ++D I +S MI ++
Sbjct: 64 AEFATPPIDAPNKGYIVPNVELTPLCSPRFRPGPPGEEAQVASQFIADVIENSQMILKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD G L D + + VA+ N ++P+V ++
Sbjct: 124 LCIENGKLAWVLYCDLICLDYGGNLLDTCMCALVASLRNARLPSVKIN------------ 171
Query: 198 EENSEKEPVNKEKRK-LTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSN 255
E + VN R L + P S + I +IL DPT+EEES+ L+T+V D
Sbjct: 172 -EETGLAQVNLSTRNALKIHKHPLSTSFAIFDNKHILVDPTNEEESLATGLMTIVTDEDG 230
Query: 256 QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILE 293
+L ++ KPGG+ L+ +QDCI+ R KE+ +L+
Sbjct: 231 RLCTIRKPGGSALS-AEKLQDCISRAITRHKEVQNLLD 267
>gi|149730159|ref|XP_001495596.1| PREDICTED: exosome complex component RRP43-like [Equus caballus]
Length = 276
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 165/284 (58%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ IK
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG + DA + +AA N+Q+P V++
Sbjct: 124 LCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTI------------S 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +TVV+D +
Sbjct: 172 EETALAEVNLKKKSFLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E + M+
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVVKSMK 274
>gi|114649397|ref|XP_522661.2| PREDICTED: exosome complex component RRP43 isoform 4 [Pan
troglodytes]
gi|397513274|ref|XP_003826944.1| PREDICTED: exosome complex component RRP43 [Pan paniscus]
Length = 276
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 165/284 (58%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK W++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 124 LCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +T+V+D +
Sbjct: 172 EETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E I M+
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 274
>gi|403286361|ref|XP_003934463.1| PREDICTED: exosome complex component RRP43 [Saimiri boliviensis
boliviensis]
Length = 276
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 166/284 (58%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFAVPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 124 LCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +T+V+D +
Sbjct: 172 EETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E I ++
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSIK 274
>gi|254692991|ref|NP_081424.3| exosome complex component RRP43 isoform 2 [Mus musculus]
gi|21759414|sp|Q9D753.1|EXOS8_MOUSE RecName: Full=Exosome complex component RRP43; AltName:
Full=Exosome component 8; AltName: Full=Ribosomal
RNA-processing protein 43
gi|22208743|emb|CAD43467.1| CBP-interacting protein 3 [Mus musculus]
gi|148703329|gb|EDL35276.1| exosome component 8, isoform CRA_d [Mus musculus]
Length = 276
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 100/283 (35%), Positives = 164/283 (57%), Gaps = 14/283 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P +++PD G V + +PP+CS R G P E A V ++ ++D + +S +I ++
Sbjct: 64 AEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 124 LCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +TVV D +
Sbjct: 172 EETALAEVNLKKKSYLNVRTNPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
L L+KPGG+ L + +QDC++ R KE+ ++L+E I M
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVSKLLDEVIQSM 273
>gi|432896001|ref|XP_004076251.1| PREDICTED: exosome complex component RRP43-like [Oryzias latipes]
Length = 277
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 103/283 (36%), Positives = 169/283 (59%), Gaps = 12/283 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ PL Y L E+ RPD R LS R TT+++G++++ADGSAL K+GSTT++ IK
Sbjct: 4 GFKTAEPLEYHMSFLKENCRPDGRELSEFRTTTLNIGSISTADGSALVKLGSTTVICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E+ P++E+P +G + + +PP+CS RPG P E A ++ ++D I SS +I ++
Sbjct: 64 AELANPTVEAPGKGYIVPNVDLPPLCSSRFRPGPPGEQAQASSQFIADVIESSEIIKPED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK W++Y DI CLD DG + DA +++ +AA N ++P V+++ K PE
Sbjct: 124 LCIDRGKLCWVLYCDIMCLDYDGNILDACIIALLAALKNTRLPKVTVN--KATCKPEIDL 181
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
+E E PV+K G F CI + ++ DPT++EES+ + ++VV D +L
Sbjct: 182 KERHEL-PVHKHPV-----GTSF---CIFQDSILIVDPTADEESLSTSRLSVVTDEEERL 232
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
SL+KPGG L+ +Q CI R +E+ +++E+ ++ ++
Sbjct: 233 CSLHKPGGTSLS-AEKLQTCINRATARQREIQKLIEKVLNSVK 274
>gi|148225933|ref|NP_001079391.1| exosome component 8 [Xenopus laevis]
gi|27371055|gb|AAH41271.1| MGC52847 protein [Xenopus laevis]
gi|76779666|gb|AAI06634.1| MGC52847 protein [Xenopus laevis]
Length = 276
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 105/284 (36%), Positives = 166/284 (58%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L+ R TTI++G++ +ADGSAL K+G+ T+L +K
Sbjct: 4 GFKTVEPLEYYRRFLKEACRPDGRELTEFRTTTINVGSITTADGSALVKLGNCTVLCGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E+ P +SPD+G V + + P+CS RPG P E A V ++ ++D I +S M+ ++
Sbjct: 64 AELAAPPADSPDKGYVVPNVDLTPLCSSQFRPGPPGEEAQVASQFMADVIDNSQMLLKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG L D + + VAA N+++P+V ++
Sbjct: 124 LCIAHGKLAWVLYCDLICLDYDGNLLDTCMCALVAALQNVRLPSVKIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKNY-ILADPTSEEESIMETLVTVVLDSSNQ 256
EE E K K L + P + + L + +L DPT EEES+ L+TVV D +
Sbjct: 172 EETGLAEVNLKTKCALKILKHPVATSFALFDDTSLLVDPTGEEESLASGLLTVVTDEDER 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L + KPGG+ L+ +Q+CI+ R KE+ +L+EA++ ++
Sbjct: 232 LCATRKPGGSALS-AEKLQECISRAITRHKEVTNLLQEALASVK 274
>gi|363729290|ref|XP_003640625.1| PREDICTED: exosome complex component RRP43-like [Gallus gallus]
Length = 276
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 169/284 (59%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
AF+ + PL Y+ R L E+ RPD R L R TT+++G++ +ADGSAL K+G+TT++ +K
Sbjct: 4 AFKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSITTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E+ P+L+S ++G + + +P +CS R G P E A ++ ++D I +S +I ++
Sbjct: 64 AELAAPALDSANKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADVIENSQVIAKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y DI CLD DG + DA+ + +AA N+Q+P+V+++
Sbjct: 124 LCIADGKLAWVLYCDIICLDYDGNILDASTFALLAALKNVQLPSVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE E K+K L + P + + I ++ DPT+EEE + VTVV D ++
Sbjct: 172 EETGLSEVNLKQKNPLVIRKHPVATSFAIFDDTLLIVDPTAEEEDLATGTVTVVTDEDDR 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L S++KPGG+ L + +QDCI+ R KE+ +++++ I ++
Sbjct: 232 LCSVHKPGGSPLT-GAKLQDCISRAITRHKEVKKLIDKVIKSIK 274
>gi|348583439|ref|XP_003477480.1| PREDICTED: exosome complex component RRP43-like [Cavia porcellus]
Length = 276
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 163/284 (57%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ IK
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFAVPPADAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG + DA + +AA N+Q+P V ++
Sbjct: 124 LCISSGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVRIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +TVV++ +
Sbjct: 172 EETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTVVMNEEGR 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L +QDC+ R KE+ ++++E I M+
Sbjct: 232 LCCLHKPGGSGLT-GPKLQDCMGRAVTRHKEVKKLMDEVIRSMK 274
>gi|297693867|ref|XP_002824217.1| PREDICTED: exosome complex component RRP43 [Pongo abelii]
Length = 276
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 165/284 (58%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSISTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFAAPPTDAPDTGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK W++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 124 LCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +T+V+D +
Sbjct: 172 EETALAEVNLKKKSYLNVRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E I+ M+
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVINSMK 274
>gi|37589850|gb|AAH59089.1| Exosome component 8 [Mus musculus]
Length = 276
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 100/283 (35%), Positives = 164/283 (57%), Gaps = 14/283 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P +++PD G V + +PP+CS R G P E A V ++ ++D + +S +I ++
Sbjct: 64 AEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 124 LCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +TVV D +
Sbjct: 172 EETALAEVNLKKKSYLNVRTNPVAASFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
L L+KPGG+ L + +QDC++ R KE+ ++L+E I M
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVSKLLDEVIQSM 273
>gi|395520931|ref|XP_003764575.1| PREDICTED: exosome complex component RRP43 [Sarcophilus harrisii]
Length = 276
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 99/284 (34%), Positives = 165/284 (58%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TTI++G++ +ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTINIGSITTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++S ++G + + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFAAPPVDSLNKGYIVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 124 LCISHGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPAVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE E K+K L + P + + I ++ DPT EEE + +TVV+D +
Sbjct: 172 EETGLAEVNFKKKSHLNIRTHPIATSFAIFDDTLLIVDPTGEEEHLATGTLTVVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE++++++E I ++
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEINKLMDEVIESVK 274
>gi|60359866|dbj|BAD90152.1| mKIAA4013 protein [Mus musculus]
Length = 308
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 164/284 (57%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 36 GFKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVK 95
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P +++PD G V + +PP+CS R G P E A V ++ ++D + +S +I ++
Sbjct: 96 AEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKED 155
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 156 LCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 203
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +TVV D +
Sbjct: 204 EETALAEVNLKKKSYLNVRTNPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGK 263
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++L+E I M
Sbjct: 264 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVSKLLDEVIQSMR 306
>gi|56118510|ref|NP_001007919.1| exosome component 8 [Xenopus (Silurana) tropicalis]
gi|51513372|gb|AAH80360.1| exosc8 protein [Xenopus (Silurana) tropicalis]
gi|89269528|emb|CAJ82996.1| exosome component 8 [Xenopus (Silurana) tropicalis]
Length = 276
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 164/284 (57%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ + L E+ RPD R L+ R TTI++G++ +ADGSAL K+G+ T+L +K
Sbjct: 4 GFKTVEPLEYYRKFLKEACRPDGRELTEFRTTTINVGSITTADGSALVKLGNCTVLCGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++P++G V + + P+CS RPG P E A V ++ ++D I +S M+ ++
Sbjct: 64 AEFTAPPADAPNKGYVVPNVDLTPLCSSQFRPGPPGEEAQVASQFIADVIDNSQMLLKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG L D + + VAA N+++P+V ++
Sbjct: 124 LCIAHGKLAWVLYCDLICLDYDGNLLDTCMCALVAALQNVRLPSVKIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE E K K L + P + + + ++L DPT EEE + L+TVV D +
Sbjct: 172 EETGLAEVNLKTKHALKILKHPVATSFAVFDDTFLLVDPTGEEEGLASGLLTVVTDEDER 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L + KPGG+ LA +Q+CI+ R KE+ +L+EA++ ++
Sbjct: 232 LCATRKPGGSALA-AEKLQECISRAITRHKEVTNLLQEALASVK 274
>gi|426375219|ref|XP_004054442.1| PREDICTED: exosome complex component RRP43 [Gorilla gorilla
gorilla]
Length = 276
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 164/284 (57%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK W++Y D+ CLD DG + DA + +AA N+Q+P V ++
Sbjct: 124 LCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVIIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +T+V+D +
Sbjct: 172 EETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E I M+
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 274
>gi|224043308|ref|XP_002196618.1| PREDICTED: exosome complex component RRP43 [Taeniopygia guttata]
Length = 276
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/283 (34%), Positives = 166/283 (58%), Gaps = 14/283 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
AF+ + PL Y+ R L E+ RPD R L R TT+++G++ +ADGSAL K+G+TT++ +K
Sbjct: 4 AFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSITTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E+ P+ +S ++G + + +P +C+ R G P E A ++ ++D I +S MI ++
Sbjct: 64 AELAAPAADSANKGYIVPNVELPSLCAERFRSGPPGEEAQAASQFIADVIENSQMIVKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y DI CLD DG L DA++ + +AA N+Q+P+V+++
Sbjct: 124 LCIANGKLAWVLYCDIICLDYDGNLLDASVFALLAALKNVQLPSVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE E K+K L + P + + I ++ DPT+EEE + VT+V D +
Sbjct: 172 EETGLSEVNLKQKNPLIIRKHPVATSFAIFDDTLLIVDPTAEEEDLATGTVTIVTDEEGR 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
L S++KPGG+ L + +QDCI R KE+ +++++ I +
Sbjct: 232 LCSVHKPGGSPLT-GAKLQDCITRAITRHKEVKKLIDKVIKSI 273
>gi|119628986|gb|EAX08581.1| exosome component 8, isoform CRA_c [Homo sapiens]
Length = 275
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/285 (34%), Positives = 165/285 (57%), Gaps = 17/285 (5%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E PS ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK W++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 124 LCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +T+V+D +
Sbjct: 172 EETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSA-VQDCIALTRQRVKELHQILEEAISGME 300
L L+KPG + T A +QDC++ R KE+ ++++E I M+
Sbjct: 232 LCCLHKPG---IGLTGAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 273
>gi|126327460|ref|XP_001368047.1| PREDICTED: exosome complex component RRP43-like [Monodelphis
domestica]
Length = 276
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/284 (34%), Positives = 163/284 (57%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++ +ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSITTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++S ++G + + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 GEFAAPPVDSLNKGYIVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG + DA + +AA N+Q+P V ++
Sbjct: 124 LCISHGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPAVIIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE E K+K L + P + + I ++ DPT EEE + +TVV+D +
Sbjct: 172 EETGLAEVNLKKKSHLNIRTHPIATSFAIFDDTLLIVDPTGEEEHLATGTLTVVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E I M+
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 274
>gi|159464609|ref|XP_001690534.1| hypothetical protein CHLREDRAFT_114378 [Chlamydomonas reinhardtii]
gi|158280034|gb|EDP05793.1| predicted protein [Chlamydomonas reinhardtii]
Length = 302
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 170/293 (58%), Gaps = 8/293 (2%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++ +++ +AF+RL+P +Y++R LAE +RPD R + RAR TI G + +ADGSAL K+G
Sbjct: 13 VTDDVDAEAFKRLYPDQYYQRFLAEGVRPDGRPIGRARAVTIGAGTITTADGSALVKVGR 72
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
TT+LA +++E+M P +P G + + M P S RPGR + V ++LS +
Sbjct: 73 TTVLAGVRLEIMRPDETAPAAGALVLSVEMAPFSSADYRPGRAPDHVSAVVEKLSSALLG 132
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTV-SLDDGK 188
SG L + GKAAW LD+Y LDADG + DAALL+AVAA + +IP V + +G
Sbjct: 133 SG----AALCIAEGKAAWRALLDVYVLDADGCVLDAALLAAVAALRDTRIPAVRNTREGH 188
Query: 189 IV---MLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMET 245
+ + E V + LG +P +LTC L+ ++L DPT++EE +
Sbjct: 189 YYAARGAGGRKGGKAGEAGLVEGSPTAVGLGRLPLALTCCLYGKHVLVDPTADEERLAGC 248
Query: 246 LVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISG 298
VTVV+D + QL LYK GG VLA T+ + C R R +EL +L+ ++ G
Sbjct: 249 GVTVVVDGAGQLQGLYKAGGRVLADTATLVRCTEAARLRHRELSALLDASLVG 301
>gi|296203741|ref|XP_002749024.1| PREDICTED: uncharacterized protein LOC100407072 [Callithrix
jacchus]
Length = 276
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 165/284 (58%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 124 LCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTING----------- 172
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
E + E K+K L + P + + + ++ DPT EEE + +T+V+D +
Sbjct: 173 -ETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E I ++
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSIK 274
>gi|318083345|ref|NP_001187695.1| exosome complex exonuclease rrp43 [Ictalurus punctatus]
gi|308323723|gb|ADO28997.1| exosome complex exonuclease rrp43 [Ictalurus punctatus]
Length = 277
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 164/284 (57%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ PL Y L E+ RPD R L R TT++ G++++ADGSAL KIG+ T++ IK
Sbjct: 4 GFKTAEPLEYHRSFLKENCRPDGRELGEFRPTTLNTGSISTADGSALVKIGNATVICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E+ TP+ ++PD+G + + +PP+CS RPG P E A V ++ ++D I S +I ++
Sbjct: 64 AELATPTADAPDKGYIVPNVDLPPLCSSRFRPGPPGEQAQVASQFIADIIDDSNIIKKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + K W++Y DI CLD DG L DA +++ +AA N Q+P V+++ K LPE
Sbjct: 124 LCIGKSKLCWVLYCDIMCLDYDGNLPDACIITLLAALKNAQLPKVTIN--KETDLPEVDV 181
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
+ KR L + P + + + I+ DPT+EEES+ L+T V D ++Q
Sbjct: 182 Q----------HKRHLQINKHPVASSFAVFDDEVIIVDPTTEEESLATALITAVTDENDQ 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L + +KPGG+ L+ +Q CI+ R +E++++++ ++
Sbjct: 232 LCAFHKPGGSSLS-AEKLQGCISRAVTRNREINKLIDRVTESIK 274
>gi|45595709|gb|AAH67250.1| Exosc8 protein, partial [Mus musculus]
Length = 270
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 161/277 (58%), Gaps = 14/277 (5%)
Query: 24 PLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTP 83
PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K E P
Sbjct: 4 PLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAP 63
Query: 84 SLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGG 143
+++PD G V + +PP+CS R G P E A V ++ ++D + +S +I ++L + G
Sbjct: 64 PVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCISPG 123
Query: 144 KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEK 203
K AW++Y D+ CLD DG + DA + +AA N+Q+P V+++ EE +
Sbjct: 124 KLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------EETALA 171
Query: 204 EPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
E K+K L + P + + + ++ DPT EEE + +TVV D +L L+K
Sbjct: 172 EVNLKKKSYLNVRTNPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHK 231
Query: 263 PGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
PGG+ L + +QDC++ R KE+ ++L+E I M
Sbjct: 232 PGGSGLT-GAKLQDCMSRAVTRHKEVSKLLDEVIQSM 267
>gi|389740648|gb|EIM81838.1| hypothetical protein STEHIDRAFT_171488 [Stereum hirsutum FP-91666
SS1]
Length = 287
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 174/290 (60%), Gaps = 11/290 (3%)
Query: 5 NASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSAL 64
+ S+ ++ F+RL P Y ER +AES+RPD R+ R+ ++++G++ +A+GS+L
Sbjct: 7 STSDPQQGDLNAKIFQRLHPRIYLERFIAESVRPDGRTFDDWRDLSVNVGSIGTANGSSL 66
Query: 65 AKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLS 124
++G TT++ +K E+ P L+ PDEG + + +PPICSP +PG P++ A ++ +L
Sbjct: 67 VRLGDTTIVCGVKAEIAEPDLDRPDEGWIVPNIDLPPICSPKFKPGPPSDEAQALSDRLF 126
Query: 125 DTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL 184
D+++SS ++ L L + GK+AW++Y+D C++ DG +FDAAL++ V+A N +P +
Sbjct: 127 DSLTSSNVLPLSSLCIEPGKSAWVLYVDATCINYDGNVFDAALVAMVSALKNTLLPKATF 186
Query: 185 DDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG-GIPFSLTCILHKNYILADPTSEEESIM 243
D P+ ++ S K+ + L L G+P SL+ L + ILADPTS EE ++
Sbjct: 187 D-------PDTERTTCSRKKEL---MSPLELSEGLPISLSFGLFDSNILADPTSFEEPLL 236
Query: 244 ETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILE 293
+T +++ L++S + + G LA + V CI ++R+++ I E
Sbjct: 237 DTTISITLNTSTKQLLAVSQLGEGLAGSDVVGKCIQEAKRRLEDGSSIYE 286
>gi|119628984|gb|EAX08579.1| exosome component 8, isoform CRA_a [Homo sapiens]
Length = 316
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 169/298 (56%), Gaps = 17/298 (5%)
Query: 5 NASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSAL 64
+A E E + R + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL
Sbjct: 32 SAEEGTPEEPQSPGERTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSAL 91
Query: 65 AKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLS 124
K+G+TT++ +K E PS ++PD+G V + +PP+CS R G P E A V ++ ++
Sbjct: 92 VKLGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIA 151
Query: 125 DTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL 184
D I +S +I ++L + GK W++Y D+ CLD DG + DA + +AA N+Q+P V++
Sbjct: 152 DVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTI 211
Query: 185 DDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIM 243
+ EE + E K+K L + P + + + ++ DPT EEE +
Sbjct: 212 N------------EETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLA 259
Query: 244 ETLVTVVLDSSNQLVSLYKPGGAVLAYTSA-VQDCIALTRQRVKELHQILEEAISGME 300
+T+V+D +L L+KPG + T A +QDC++ R KE+ ++++E I M+
Sbjct: 260 TGTLTIVMDEEGKLCCLHKPG---IGLTGAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 314
>gi|307111676|gb|EFN59910.1| hypothetical protein CHLNCDRAFT_132943 [Chlorella variabilis]
Length = 301
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 176/297 (59%), Gaps = 35/297 (11%)
Query: 11 SSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGST 70
S+E++ D+F+RL+P +Y A+ T+I +G V++AD SAL K+GST
Sbjct: 7 SAELQADSFKRLYPDQYL-----------------AKPTSIGLGVVSTADASALVKVGST 49
Query: 71 TMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSS 130
LA IK EVM S ++P+EG +++ + P+CS RPGRP+EAA V+ +QLS + +
Sbjct: 50 AALAGIKCEVMPASADTPEEGRLALQVELAPLCSADTRPGRPSEAAAVLTEQLSSLLEGA 109
Query: 131 GMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD-GKI 189
G+++ ++L + GKAAW VY+D+Y LDADG+L DA LL+ +AA S+L++ V++DD G+I
Sbjct: 110 GVVDRRQLCIDPGKAAWAVYVDVYVLDADGSLHDACLLAVLAALSSLRLHAVAVDDTGRI 169
Query: 190 VMLPEEQKEENS-----------------EKEPVNKEKRKLTLGGIPFSLTCILHKNYIL 232
P + + +++P ++R L L P SLTC L+++ +L
Sbjct: 170 QKAPADAAAAGAAGAQRQQGAADGAATALQQQPQGHQRRPLLLACHPVSLTCGLYRDRLL 229
Query: 233 ADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELH 289
DPT+EEE ++E +T +D S ++ YK GG+ + +CI +QR +E+
Sbjct: 230 VDPTAEEEPLLEAAMTTTVDESGDILGFYKAGGSATLSRERMLECIEAAKQRSREVR 286
>gi|148230376|ref|NP_001088781.1| uncharacterized protein LOC496046 [Xenopus laevis]
gi|56269196|gb|AAH87445.1| LOC496046 protein [Xenopus laevis]
Length = 276
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 162/281 (57%), Gaps = 14/281 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E RPD R L+ R TTI++G++ +ADGSAL K+G+ T+L +K
Sbjct: 4 GFKTVEPLEYYRRFLKEICRPDGRELTEFRTTTINVGSITTADGSALVKLGNCTVLCGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++P++G V + + P+CS RPG P E A V ++ ++D I +S M+ ++
Sbjct: 64 AEFAAPPADAPNKGYVVPNVDLSPLCSSQFRPGPPGEEAQVASQFMADVIDNSQMLLKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG L D + VAA N+++P+V ++
Sbjct: 124 LCIRHGKLAWVLYCDLICLDYDGNLLDTCTCALVAALQNVRLPSVKIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE E K K L + P + + + ++LADPT EEES+ L+TVV D +
Sbjct: 172 EETGLAEVNLKTKCALKILKHPIATSFAVFDDKFLLADPTGEEESLARGLLTVVTDEDER 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
L + KPGG+ L+ +Q+CI+ R KE+ +L+EA++
Sbjct: 232 LCATQKPGGSSLS-AEKLQECISRAITRHKEVTTLLQEALA 271
>gi|118601810|ref|NP_001073074.1| exosome complex component RRP43 [Bos taurus]
gi|122135904|sp|Q2KHU3.1|EXOS8_BOVIN RecName: Full=Exosome complex component RRP43; AltName:
Full=Exosome component 8; AltName: Full=Ribosomal
RNA-processing protein 43
gi|86826533|gb|AAI12882.1| Exosome component 8 [Bos taurus]
gi|296481825|tpg|DAA23940.1| TPA: exosome complex exonuclease RRP43 [Bos taurus]
Length = 276
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 163/284 (57%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++ +ADGSAL K+G+TT++ IK
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G V + + P+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CL+ DG + DA + +AA N+Q+P V+++
Sbjct: 124 LCISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +TVV+D +
Sbjct: 172 EETALAEVNLKKKSCLNIRTHPVATSFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEEGR 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E M+
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVFKSMK 274
>gi|348541677|ref|XP_003458313.1| PREDICTED: exosome complex component RRP43-like [Oreochromis
niloticus]
Length = 277
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 169/277 (61%), Gaps = 16/277 (5%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ PL Y L E+ RPD R L+ R TT+++G++++ADGSAL K+G+TT++ IK
Sbjct: 4 GFKTAEPLEYHRSFLKENCRPDGRELTEFRTTTLNIGSISTADGSALVKLGNTTIICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E+ P++E+P +G + + +PP+CS RPG P E A ++ ++D I SS +I ++
Sbjct: 64 AELANPTVEAPGKGYIVPNVDLPPLCSSRFRPGPPGEEAQAASQFIADVIESSEVIKTED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
LS+ GK W++Y D+ CLD DG + DA +++ +AA N ++P V+++
Sbjct: 124 LSIDRGKLCWVLYCDLMCLDYDGNILDACVIALLAALKNTRLPEVTIN------------ 171
Query: 198 EENSEKEPVNKEKR-KLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSN 255
+E S E VN EKR +L + S + CI + +++DPT+EEE++ +TVV D +
Sbjct: 172 KETSAPE-VNLEKRWELQIHKHLVSASFCIFDDSILISDPTAEEETLSTAHLTVVTDEDD 230
Query: 256 QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
+L S++KPGG L+ +Q+CI+ R +E+ +++
Sbjct: 231 RLCSVHKPGGTSLS-GERLQECISRATTRQREIQKLI 266
>gi|393216212|gb|EJD01703.1| hypothetical protein FOMMEDRAFT_88508 [Fomitiporia mediterranea
MF3/22]
Length = 294
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 175/291 (60%), Gaps = 21/291 (7%)
Query: 8 EDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKI 67
+ + +E++ + FRRL P Y ER L E RPD R ++ R+ ++++G++++ADGS+L ++
Sbjct: 18 QSVDTELQAETFRRLHPRTYLERFLNEGFRPDGREVADFRDVSVNVGSISTADGSSLVRL 77
Query: 68 GSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI 127
G TT++ +K E+ P L+SP+ G + + +P ICSP +PG PA+ A V++++L D +
Sbjct: 78 GDTTIVCGVKAEIAEPELDSPELGFIVPNLDLPAICSPKFKPGPPADEAQVLSERLYDAL 137
Query: 128 SSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDG 187
SS ++L L + KA W++Y+D C++ DG +FDAALL+ +AA N ++P + D
Sbjct: 138 ISSETVSLPSLCIHPRKAVWVLYVDATCINFDGNVFDAALLAMIAALKNTRLPKATFD-- 195
Query: 188 KIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTC-ILHKNYILADPTSEEESIMETL 246
EE KEK L + P +++ I +ILADP+S EE ++ T
Sbjct: 196 ----------EETGRTTCSRKEKTALQILRTPLAISFGIFDSTHILADPSSFEEPLLNTS 245
Query: 247 VTVVLDSSNQLVSLYKPGGAVLAYTSAVQD----CIALTRQRVKELHQILE 293
TV++D ++LVS+ + G A TS+VQD CIA R+R KEL I++
Sbjct: 246 YTVIIDEKDELVSVQQAG----ASTSSVQDSMLNCIAAARKRRKELGAIID 292
>gi|254675240|ref|NP_001157042.1| exosome complex component RRP43 isoform 1 [Mus musculus]
Length = 280
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 164/287 (57%), Gaps = 18/287 (6%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSI----DFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMI 133
E P +++PD G V + +PP+CS R G P E A V ++ ++D + +S +I
Sbjct: 64 AEFAAPPVDAPDRGYVVFLSVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVI 123
Query: 134 NLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLP 193
++L + GK AW++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 124 KKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN-------- 175
Query: 194 EEQKEENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLD 252
EE + E K+K L + P + + + ++ DPT EEE + +TVV D
Sbjct: 176 ----EETALAEVNLKKKSYLNVRTNPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTD 231
Query: 253 SSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
+L L+KPGG+ L + +QDC++ R KE+ ++L+E I M
Sbjct: 232 EDGKLCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVSKLLDEVIQSM 277
>gi|432111599|gb|ELK34704.1| Exosome complex component RRP43 [Myotis davidii]
Length = 307
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 165/285 (57%), Gaps = 17/285 (5%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL ++ R L E+ RPD R L R TT+++G+V++ADGSAL K+G+T ++ IK
Sbjct: 36 GFKTVEPLEFYRRFLKENCRPDGRELGEFRTTTVNIGSVSTADGSALVKLGNTAVICGIK 95
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 96 AEFAAPPPDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIPKED 155
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK +W++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 156 LCISPGKLSWVLYCDLICLDYDGNILDACTCALLAALKNVQLPEVTIN------------ 203
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+KR L + P + + + ++ DPT EEE + +TVV+D +
Sbjct: 204 EETALAEVNLKKKRYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGK 263
Query: 257 LVSLYKPGGAVLAYTSA-VQDCIALTRQRVKELHQILEEAISGME 300
L L+KPG + T A +QDC++ R KE+ ++++E I M+
Sbjct: 264 LCCLHKPG---IGLTGAKLQDCLSRAVTRHKEIKKLMDEVIKSMK 305
>gi|426236417|ref|XP_004012165.1| PREDICTED: exosome complex component RRP43 [Ovis aries]
Length = 276
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 163/284 (57%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++ +ADGS+L K+G+TT++ IK
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSSLVKLGNTTVICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G V + + P+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFGAPPTDAPDKGYVVPNVDLSPLCSWRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CL+ DG + DA + +AA N+Q+P V+++
Sbjct: 124 LCISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +TVV+D +
Sbjct: 172 EETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E M+
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVFKSMK 274
>gi|2815604|gb|AAC39558.1| Opa-interacting protein OIP2 [Homo sapiens]
Length = 265
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 159/274 (58%), Gaps = 14/274 (5%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 2 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVK 61
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E PS ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 62 AEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 121
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK W++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 122 LCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 169
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +T+V+D +
Sbjct: 170 EETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGK 229
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQ 290
L L+KPGG+ L + +QDC++ R KE+ +
Sbjct: 230 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKK 262
>gi|156363851|ref|XP_001626253.1| predicted protein [Nematostella vectensis]
gi|156213123|gb|EDO34153.1| predicted protein [Nematostella vectensis]
Length = 276
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 176/282 (62%), Gaps = 14/282 (4%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
F+ P+ Y+++ L E+IRPD R L R T +++G++++A+GSAL K+G+TT++ +
Sbjct: 5 FKTAEPVEYYKQFLKENIRPDGRGLFDFRETILNVGSISTANGSALVKLGNTTVVCGVTA 64
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E P+ + P++G + + +PP+CSP RPG P+E A V++ + + I++S +I+L++L
Sbjct: 65 EFAEPAADVPNKGFIVPNVDLPPLCSPSFRPGPPSEHAQVLSTFIDNLITNSQLIDLEDL 124
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+V GK W++Y+D+ CLD DG + DAA+++ +AA N ++ TV++++ P E K+
Sbjct: 125 CIVDGKLVWVLYIDLMCLDYDGNVADAAVIAMLAALQNTRLHTVTINEETETPEPSENKD 184
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLTC-ILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
+ L L +P ++T I ++I DPT EEE + V+VV+ ++N++
Sbjct: 185 IH------------LKLKSMPVAVTFGIFDDDHIYCDPTDEEERLASGKVSVVMTTNNKV 232
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
V+++KPGG L +Q+C +T RV E+ Q+++ A + +
Sbjct: 233 VAVHKPGGPPLT-QDKLQECFDVTTGRVLEVQQLIDAACTNV 273
>gi|440896423|gb|ELR48345.1| Exosome complex exonuclease RRP43, partial [Bos grunniens mutus]
Length = 291
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 160/284 (56%), Gaps = 13/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++ +ADGSAL K+G+TT++ IK
Sbjct: 18 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIK 77
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G V + + P+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 78 AEFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 137
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CL+ DG + DA + +AA N+Q+P V+++
Sbjct: 138 LCISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTIN------------ 185
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +TVV+D +
Sbjct: 186 EETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEEGR 245
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPG + +QDC++ R KE+ ++++E M+
Sbjct: 246 LCCLHKPGSGSGLTGAKLQDCMSRAVTRHKEVKKLMDEVFKSMK 289
>gi|326914227|ref|XP_003203428.1| PREDICTED: exosome complex exonuclease RRP43-like [Meleagris
gallopavo]
Length = 291
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 165/278 (59%), Gaps = 14/278 (5%)
Query: 24 PLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTP 83
PL Y+ R L E+ RPD R L R TT+++G++ +ADGSAL K+G+TT++ +K E+ P
Sbjct: 25 PLEYYRRFLKENCRPDGRELGEFRATTVNIGSITTADGSALVKLGNTTVICGVKAELAAP 84
Query: 84 SLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGG 143
+++S ++G + + +P +CS R G P E A ++ ++D I +S +I ++L + G
Sbjct: 85 AVDSANKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADVIENSQIIAKEDLCIAEG 144
Query: 144 KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEK 203
K AW++Y DI CLD DG + DA+ + +AA N+Q+P+V+++ EE
Sbjct: 145 KLAWVLYCDIICLDYDGNILDASTFALLAALKNVQLPSVTIN------------EETGLS 192
Query: 204 EPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
E K+K L + P + + I ++ DPT+EEE + VTVV D ++L S++K
Sbjct: 193 EVNLKQKNPLVIRKHPVATSFAIFDDXLLIVDPTAEEEDLATGTVTVVTDEDDRLCSVHK 252
Query: 263 PGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
PGG+ L + +QDCI+ R KE+ +++++ I ++
Sbjct: 253 PGGSPLT-GAKLQDCISRAITRHKEVKKLIDKVIKSIK 289
>gi|395329798|gb|EJF62183.1| ribosomal protein S5 domain 2-like protein [Dichomitus squalens
LYAD-421 SS1]
Length = 291
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 161/275 (58%), Gaps = 20/275 (7%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
F+RL P Y ER LAE++RPD R R+ ++++G++++ADGSAL ++GSTT++ +K
Sbjct: 25 FQRLHPKTYLERFLAENVRPDGRDFDEWRDISVNVGSISTADGSALVRLGSTTVVCGVKA 84
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ P L+ P +G + + +P ICSP +PG P + A V++ +L+D + SSG+++ L
Sbjct: 85 EIAEPELDKPKDGFLVPNLDLPAICSPKFKPGPPTDEAQVISDRLNDVLISSGVVSTSSL 144
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+ K+AW++Y+D C++ DG FDA LL+ VAA N ++P D E
Sbjct: 145 CIEPSKSAWVLYVDATCINYDGNAFDATLLAMVAALKNTRLPKARYD------------E 192
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLTC-ILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
+ + K K L +G +P S + I YILADPTS EE +++T V+VV+D + L
Sbjct: 193 DRQQTICSRKVKEPLQIGRLPVSFSFGIFDGAYILADPTSFEEPLLDTSVSVVVDDAGGL 252
Query: 258 VSLYKPG-----GAVLAYT--SAVQDCIALTRQRV 285
+S+ + G G L T A ++C TR+ V
Sbjct: 253 ISVMQLGLGTADGQDLLSTCIDAAKECWQNTRKDV 287
>gi|409050427|gb|EKM59904.1| hypothetical protein PHACADRAFT_181840 [Phanerochaete carnosa
HHB-10118-sp]
Length = 287
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 166/275 (60%), Gaps = 20/275 (7%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
F+RL P Y ER LAE++RPD R + R+ ++++G++++ADGSAL ++G TT++ +K
Sbjct: 24 FQRLHPKAYLERFLAENVRPDGREPTEWRDVSVNVGSISTADGSALVRLGDTTVVCGVKA 83
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ P L+SP++G + + +P ICSP RPG P++ A V++ +L++T+ S+G+I+ + L
Sbjct: 84 EIAEPELDSPEDGFLVPNLDLPAICSPKFRPGPPSDEAQVLSDRLNETLVSTGVISTRSL 143
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD--GKIVMLPEEQ 196
+ KA W++Y+D C++ DG DA L++ +AA N ++P + D+ G+++
Sbjct: 144 CIESRKAVWVLYVDATCINYDGNALDATLVAMIAALQNTRLPKATFDEDTGRVLC----- 198
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLTC-ILHKNYILADPTSEEESIMETLVTVVLDSSN 255
KE L + P S++ + +IL DPTS EE +++T TV +D +
Sbjct: 199 ---------TRKEMIPLQISRFPLSMSFGVFDGTHILTDPTSFEEPLLDTTFTVTVDENG 249
Query: 256 QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQ 290
++S+ + G LA ++ CIA T+ R ++L +
Sbjct: 250 GVISVVQLG---LASQDVLRKCIATTKSRYRQLAK 281
>gi|47227071|emb|CAG00433.1| unnamed protein product [Tetraodon nigroviridis]
Length = 275
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 167/286 (58%), Gaps = 16/286 (5%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ L Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ IK
Sbjct: 4 GFKTADLLEYYRRFLKENCRPDGRELLEFRPTTLNIGSISTADGSALVKVGNTTIICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E+ P++E+P +G + + +PP+CS RPG P E A ++ ++D I SS +I ++
Sbjct: 64 AELANPTVEAPGKGYIVPNVDLPPLCSSRFRPGPPGEQAQACSQFIADLIESSEIIQPED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDGKIVMLPEE 195
L + GK W++Y D+ CLD DG L DA +++ +AA Q+P +S + V+ E+
Sbjct: 124 LCIERGKLCWVLYCDLMCLDYDGNLRDACVIALLAALKITQLPEAIISTETCLPVVDLEK 183
Query: 196 QKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSN 255
++ N K PV S CI ++ ++ DPT EEE++ +TVV D +
Sbjct: 184 KRGLNIRKHPVG-------------SSFCIFDESTLIVDPTDEEENLSTAQITVVTDEGD 230
Query: 256 QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEI 301
L +++KPGG L+ +Q+CI R KE+ +++++ I+ +++
Sbjct: 231 GLCAVHKPGGVSLS-GEKLQECINRATVRQKEIQKLIDKVINSVKL 275
>gi|336372937|gb|EGO01276.1| hypothetical protein SERLA73DRAFT_179422 [Serpula lacrymans var.
lacrymans S7.3]
gi|336385769|gb|EGO26916.1| hypothetical protein SERLADRAFT_464533 [Serpula lacrymans var.
lacrymans S7.9]
Length = 288
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 166/296 (56%), Gaps = 19/296 (6%)
Query: 4 PNASEDLSSE---MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASAD 60
P+A D +E + F+RL P Y ER LAE++RPD R+ S R+ ++++G++++AD
Sbjct: 5 PSAVPDSPAEADSLRAQIFQRLHPRAYLERFLAENVRPDGRAFSEWRDVSLNVGSISTAD 64
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVA 120
GSAL ++G TT++ +K E+ P L+ PDEG + + +P +CS +PG P E A V++
Sbjct: 65 GSALVRMGDTTVVCGVKAEIAEPELDHPDEGYLVPNLDLPAMCSSKFKPGPPTEEAQVLS 124
Query: 121 KQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP 180
+L+ + SG+I+L L + G++ W +Y+D C++ G FDA LL+ VAA N +IP
Sbjct: 125 DRLNQALVMSGVISLSSLCIHSGRSVWTLYVDATCINYAGNAFDATLLAMVAALKNTRIP 184
Query: 181 TVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTC-ILHKNYILADPTSEE 239
S D EE+ K + LTL P S + I + ILADPT+ E
Sbjct: 185 QASFD------------EESGRTVCSRKNRVPLTLSRFPTSASFGIFDASQILADPTAFE 232
Query: 240 ESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSA---VQDCIALTRQRVKELHQIL 292
E +++ V VV+D +L+S+ G + + +Q CI+ + R EL ++L
Sbjct: 233 EPLLDATVCVVVDEEPELISVNGVGLGITTTVDSQKTIQACISAAKNRSLELQKLL 288
>gi|91081401|ref|XP_972667.1| PREDICTED: similar to exosome component 8 [Tribolium castaneum]
gi|270006123|gb|EFA02571.1| hypothetical protein TcasGA2_TC008282 [Tribolium castaneum]
Length = 271
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 161/283 (56%), Gaps = 14/283 (4%)
Query: 17 DAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAI 76
+ ++ L P++YF HLA IRPD R R +++G++++ADGSA+AK+G TT++ I
Sbjct: 3 EQYKILHPVKYFRDHLAHKIRPDGREFGEYRPIVVNLGSISTADGSAIAKVGRTTVVCGI 62
Query: 77 KMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLK 136
K E+ P E+ +EG + + +PP+CS RPG P E A V + ++D + +S ++LK
Sbjct: 63 KAELCQPKAEAANEGFLIPNVELPPLCSSKFRPGPPTEQAQVATQLVADILKNSDCLDLK 122
Query: 137 ELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQ 196
L + K AW +Y D+ CLD DGAL DA +++ +AA ++ +P V D +
Sbjct: 123 TLCIFPDKLAWCLYADLICLDLDGALIDACVVALMAALKSVTLPAVQYDPAL------DN 176
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
K+ N + E++ L++ P + T + + IL DPT +EE + +LVT+V+ +
Sbjct: 177 KQVNVQ------ERKALSVTNTPIATTFAMFDDKILIDPTVDEEDLSTSLVTIVV-KEEE 229
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
L ++KPGG V ++ C+ + +R + +I+E A +
Sbjct: 230 LCFVHKPGGCVFTEEQLLK-CVEESTKRATVIEEIIETAFKSL 271
>gi|182889712|gb|AAI65543.1| Exosc8 protein [Danio rerio]
Length = 277
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/278 (36%), Positives = 160/278 (57%), Gaps = 14/278 (5%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ PL Y L E+ RPD R L + R TT+++ ++++ADGSAL KIG+TT++ IK
Sbjct: 4 GFKTAEPLEYHRSFLKENCRPDGRELGKFRPTTLNINSISTADGSALVKIGNTTVICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E+ P E+ ++G + + +PP+CS R G P E A ++ ++D I SS +INL+E
Sbjct: 64 AELAVPPSEAQNKGYLVPNVDLPPLCSSRFRAGPPGEQAQAASQFIADVIESSDLINLEE 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + K W++Y DI CLD DG L DA + +AA Q+P V+++ K
Sbjct: 124 LCIEKAKLCWVLYCDIMCLDYDGNLLDACITVLLAALKTAQLPEVTIN-----------K 172
Query: 198 EENSEKEPVNKEKRKLTLGGIPF-SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
E + + + K KR+L + P S + + I+ DPT+EEES+ L+TVV D ++
Sbjct: 173 ETDLAEVDIEK-KRRLKINRHPVGSSFAVFDDSIIIVDPTAEEESLSTALMTVVTDEEDR 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEE 294
L +++KPGG L+ +Q CI R KE+ ++L++
Sbjct: 232 LCAVHKPGGTSLS-GEKLQHCINRAITRNKEIRKLLDK 268
>gi|392568344|gb|EIW61518.1| hypothetical protein TRAVEDRAFT_35012 [Trametes versicolor
FP-101664 SS1]
Length = 287
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 155/261 (59%), Gaps = 13/261 (4%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
F+RL P Y ER LAE +RPD R+L R+ ++ + ++++A+GSAL ++GSTT++ +K
Sbjct: 21 FQRLHPKTYLERFLAEDVRPDGRNLDEWRDVSVIVDSISTANGSALVRLGSTTVVCGVKA 80
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ P L+ P+ G + + +P ICSP +PG P + A V++ +L++ + SSG+++ K L
Sbjct: 81 EIAEPELDRPEHGFLVPNLDLPAICSPKFKPGPPTDEAQVLSDRLNEVLVSSGVVSTKSL 140
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+ GKA W++Y+D C++ DG FDA LL+ VAA + +P + D EE K
Sbjct: 141 CIEPGKAVWVLYVDATCINYDGNAFDATLLAMVAALKSTTLPKATYD--------EETKR 192
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLTC-ILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
+ K + L +G +P S + + +ILADPTS EE +++T ++VV+D S L
Sbjct: 193 TICSR----KVQEPLQIGRLPTSFSFGVFDGTHILADPTSFEEPLLDTTISVVVDESGGL 248
Query: 258 VSLYKPGGAVLAYTSAVQDCI 278
S+ + G ++ + CI
Sbjct: 249 TSVMQLGLGIVGADDVLNKCI 269
>gi|390601634|gb|EIN11028.1| hypothetical protein PUNSTDRAFT_142893 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 284
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 163/284 (57%), Gaps = 19/284 (6%)
Query: 6 ASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALA 65
A ED+ M F+RL P Y ER LAE IRPD R R+ TI++G++++ADGSAL
Sbjct: 13 AEEDV---MRASVFQRLHPRAYLERFLAEGIRPDGRDPGAFRDVTINVGSISTADGSALV 69
Query: 66 KIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSD 125
++G TT++ +K E+ P L SP G + + +P ICSP +PG P+E A V++++ +D
Sbjct: 70 RLGDTTIVCGVKAEIAEPDLNSPSAGFLVPNIDLPAICSPKFKPGPPSEEAQVLSEKFND 129
Query: 126 TISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD 185
++ SG++ L+ L + GK+ W++Y+D C++ DG FDAAL++ V+A + +P S D
Sbjct: 130 ILTLSGLLPLESLCIHPGKSCWVLYVDATCINYDGNAFDAALIAMVSALKDTSLPKASYD 189
Query: 186 DGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTC-ILHKNYILADPTSEEESIME 244
E++ E L L P ++ + + N++LADPTS EE +++
Sbjct: 190 ------------EDSGRTTCSRSEAMPLPLRQPPVPVSFGLFNSNHLLADPTSFEEPLLD 237
Query: 245 TLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKEL 288
T +TV+ + +LV++ + G LA S + CI + R K L
Sbjct: 238 TTITVIHNDIGELVNVTQLG---LASDSILSSCIDAAKARSKAL 278
>gi|410915784|ref|XP_003971367.1| PREDICTED: exosome complex component RRP43-like [Takifugu rubripes]
Length = 276
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 165/285 (57%), Gaps = 16/285 (5%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ L Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ IK
Sbjct: 4 GFKTADLLEYYRRFLKENCRPDGRELLEFRPTTLNIGSISTADGSALVKVGNTTIICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E+ TP++E+P +G + + +PP+CS RPG P E A ++ ++D I SS +I +
Sbjct: 64 AELATPTVEAPGKGYIVPNVDLPPLCSSRFRPGPPGEPAQACSQFIADLIESSEIIQTDD 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDGKIVMLPEE 195
L + GK W++Y D+ CLD DG L DA +++ +AA N Q+P +S + V+ E+
Sbjct: 124 LCVERGKLCWVLYCDLMCLDYDGNLRDACVIALLAALKNTQLPEAVISTETHLPVVDLEK 183
Query: 196 QKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSN 255
+ K PV S CI ++ ++ DPT EEE++ +TVV + +
Sbjct: 184 RHGLKVCKHPVA-------------SSFCIFDESTLIVDPTDEEENLSTARITVVTEEGD 230
Query: 256 QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
+L +++KPGG L+ +Q+CI R KE+ ++ ++ +S ++
Sbjct: 231 RLCAVHKPGGMSLS-GQKLQECINRATVRQKEIQKLTDKVLSSVK 274
>gi|50838810|ref|NP_001002865.1| exosome complex exonuclease RRP43 [Danio rerio]
gi|49618917|gb|AAT68043.1| Opa-interacting protein 2 [Danio rerio]
Length = 277
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/278 (36%), Positives = 159/278 (57%), Gaps = 14/278 (5%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ PL Y L E+ RPD R L R TT+++ ++++ADGSAL KIG+TT++ IK
Sbjct: 4 GFKTAEPLEYHRSFLKENCRPDGRELGEFRPTTLNINSISTADGSALVKIGNTTVICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E+ P E+ ++G + + +PP+CS R G P E A ++ ++D I SS +INL+E
Sbjct: 64 AELAVPPSEAQNKGYLVPNVDLPPLCSSRFRAGPPGEQAQAASQFIADVIESSDLINLEE 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + K W++Y DI CLD DG L DA + +AA Q+P V+++ K
Sbjct: 124 LCIEKAKLCWVLYCDIMCLDYDGNLLDACITVLLAALKTAQLPEVTIN-----------K 172
Query: 198 EENSEKEPVNKEKRKLTLGGIPF-SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
E + + + K KR+L + P S + + I+ DPT+EEES+ L+TVV D ++
Sbjct: 173 ETDLAEVDIEK-KRRLKINRHPVGSSFAVFDDSIIIVDPTAEEESLSTALMTVVTDEEDR 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEE 294
L +++KPGG L+ +Q CI R KE+ ++L++
Sbjct: 232 LCAVHKPGGTSLS-GEKLQHCINRALTRNKEIRKLLDK 268
>gi|443692453|gb|ELT94047.1| hypothetical protein CAPTEDRAFT_173435 [Capitella teleta]
Length = 277
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 161/288 (55%), Gaps = 15/288 (5%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTML 73
M VD F+ P Y+ R L + +RPD R L R TT+++G++ +ADGSAL K+G+T +L
Sbjct: 1 MAVD-FKTSLPFEYYSRFLEQDVRPDGRDLGGIRPTTLNVGSIDTADGSALVKLGNTCIL 59
Query: 74 AAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMI 133
IK E++ + E+P++G V + P+ +P R P + AP + ++ SG +
Sbjct: 60 CGIKAEMVASNPETPEQGIVDSSVSLLPMSTPQFRDRPPVDLAPSCTHFIEQLLTCSGCL 119
Query: 134 NLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLP 193
+LK+L + GK AW ++ D+ CLD DG + DA L+ +AA N +P V++D
Sbjct: 120 DLKDLCIEKGKHAWNLHCDLMCLDYDGNVLDACCLALIAALKNTVLPKVTID-------- 171
Query: 194 EEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYIL-ADPTSEEESIMETLVTVVLD 252
EE+ + KEK L++ +P S T + + +L DPT EEES+ +TVV
Sbjct: 172 ----EESGTVKLDAKEKHPLSVNAVPVSTTLAIFADKVLFVDPTQEEESLATGFITVVTK 227
Query: 253 SSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
+ + YKPGG+ + S +QDCI ++ R E+ Q++ +A+ +E
Sbjct: 228 DDDHICMTYKPGGSSVQ-PSQMQDCIKRSQHRRPEVLQLIRQALLTVE 274
>gi|66267273|gb|AAH95236.1| Exosome component 8 [Danio rerio]
Length = 277
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/278 (36%), Positives = 159/278 (57%), Gaps = 14/278 (5%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ PL Y L E+ RPD R L R TT+++ ++++ADGSAL KIG+TT++ IK
Sbjct: 4 GFKTAEPLEYHRSFLKENCRPDGRELGEFRPTTLNINSISTADGSALVKIGNTTVICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E+ P E+ ++G + + +PP+CS R G P E A ++ ++D I SS +INL+E
Sbjct: 64 AELAVPPSEAQNKGYLVPNVDLPPLCSSRFRAGPPGEQAQAASQFIADVIESSDLINLEE 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + K W++Y DI CLD DG L DA + +AA Q+P V+++ K
Sbjct: 124 LCIEKAKLCWVLYCDIMCLDYDGNLLDACITVLLAALKTAQLPEVTIN-----------K 172
Query: 198 EENSEKEPVNKEKRKLTLGGIPF-SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
E + + + K KR+L + P S + + I+ DPT+EEES+ L+TVV D ++
Sbjct: 173 ETDLAEVDIEK-KRRLKINRHPVGSSFAVFDDSIIIVDPTAEEESLSTALMTVVTDEEDR 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEE 294
L +++KPGG L+ +Q CI R KE+ ++L++
Sbjct: 232 LCAVHKPGGTSLS-GEKLQHCINRAITRNKEIRKLLDK 268
>gi|355686810|gb|AER98194.1| exosome component 8 [Mustela putorius furo]
Length = 246
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 146/252 (57%), Gaps = 13/252 (5%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ IK
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK +W++Y DI CLD DG + DA + +AA N+Q+P V+++
Sbjct: 124 LCISPGKLSWVLYCDIICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE E K+K L + P + + + ++ DPT EEE + +TVV+D +
Sbjct: 172 EETGLAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGK 231
Query: 257 LVSLYKPGGAVL 268
L L+KPGG+ L
Sbjct: 232 LCCLHKPGGSGL 243
>gi|74146647|dbj|BAE41329.1| unnamed protein product [Mus musculus]
Length = 257
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/267 (35%), Positives = 155/267 (58%), Gaps = 14/267 (5%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K E P +++PD G V
Sbjct: 1 ENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPPVDAPDRGYV 60
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDI 153
+ +PP+CS R G P E A V ++ ++D + +S +I ++L + GK AW++Y D+
Sbjct: 61 VPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCISPGKLAWVLYCDL 120
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKL 213
CLD DG + DA + +AA N+Q+P V+++ EE + E K+K L
Sbjct: 121 ICLDYDGNILDACTFALLAALKNVQLPEVTIN------------EETALAEVNLKKKSYL 168
Query: 214 TLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTS 272
+ P + + + ++ DPT EEE + +TVV D +L L+KPGG+ L +
Sbjct: 169 NVRTNPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPGGSGLT-GA 227
Query: 273 AVQDCIALTRQRVKELHQILEEAISGM 299
+QDC++ R KE+ ++L+E I M
Sbjct: 228 KLQDCMSRAVTRHKEVSKLLDEVIQSM 254
>gi|170091308|ref|XP_001876876.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648369|gb|EDR12612.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 276
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 165/274 (60%), Gaps = 14/274 (5%)
Query: 17 DAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAI 76
D F+RL P Y ER LAE++RPD R L+ AR+ +++G++++ADGSAL ++G+TT++ +
Sbjct: 8 DIFQRLHPRVYLERFLAENVRPDGRPLNVARDLAVNVGSISTADGSALVRLGNTTVVCGV 67
Query: 77 KMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLK 136
K E+ P L+ G + + +P +CSP +PG P+E A V++ +L+D + +S ++ L
Sbjct: 68 KAEIAEPELDEGVRGFLVPNLDLPAMCSPRFKPGPPSEEAQVLSDRLNDALVASNILPLT 127
Query: 137 ELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQ 196
LS+ KAAW++Y+D C++ DG +FDAAL++ V A N Q+P + D+ E
Sbjct: 128 SLSIHPNKAAWVLYVDAICINYDGNVFDAALIAMVEALRNTQLPKATYDE-------ETG 180
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSN- 255
+ S K V E +L +P S + ++LADPTS EE +++T +++++ ++N
Sbjct: 181 RTTCSRKIKVPLELNHTSL-PVPLSFG-VFDSTHVLADPTSFEEPLLDTTISIIMSNANP 238
Query: 256 -QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKEL 288
+L+S+ + G A+ C+ R R +E+
Sbjct: 239 DRLISVSQLGA---GGNDALLTCVEAARVRCREI 269
>gi|357436293|ref|XP_003588422.1| Exosome complex exonuclease RRP43 [Medicago truncatula]
gi|355477470|gb|AES58673.1| Exosome complex exonuclease RRP43 [Medicago truncatula]
Length = 133
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 107/127 (84%), Gaps = 2/127 (1%)
Query: 177 LQIPTVSL-DDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADP 235
+QIP V++ DDGKIV++ +E ++ + KE VNKEKRKLTL IP SLTCILHKNYILADP
Sbjct: 8 VQIPAVAMNDDGKIVLMSDEDGQKQA-KEQVNKEKRKLTLKSIPLSLTCILHKNYILADP 66
Query: 236 TSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEA 295
T+EEESI+ET VT++LD+S QL+SLYKPGG VLAYTSA+QDC+ALTRQRVKEL L++
Sbjct: 67 TAEEESIVETHVTIILDTSGQLISLYKPGGPVLAYTSAIQDCVALTRQRVKELKSFLDKE 126
Query: 296 ISGMEID 302
S ME++
Sbjct: 127 NSAMEVE 133
>gi|431903093|gb|ELK09269.1| Exosome complex exonuclease RRP43 [Pteropus alecto]
Length = 281
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 156/271 (57%), Gaps = 15/271 (5%)
Query: 30 RHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPD 89
R E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ IK E P ++PD
Sbjct: 22 RVQKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEFAAPPTDAPD 81
Query: 90 EGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMV 149
+G V + +PP+CS R G P E A V ++ ++D I +S +I ++L + GK AW++
Sbjct: 82 KGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLAWVL 141
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKE 209
Y D+ CLD DG + DA + +AA N+Q+P V+++ EE + E K+
Sbjct: 142 YCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------EETALAEVNLKK 189
Query: 210 KRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
K L + P + + + ++ DPT+EEE + +TVV+D ++L L+KPG +
Sbjct: 190 KSCLNIRTHPVATSFAVFDDTLLIVDPTAEEEHLATGTLTVVMDEESKLCCLHKPGIGLT 249
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAISGM 299
+QDC++ R KE+ ++++E I M
Sbjct: 250 G--GKLQDCMSRAVTRHKEVKKLMDEVIKSM 278
>gi|72041533|ref|XP_796992.1| PREDICTED: exosome complex component RRP43-like [Strongylocentrotus
purpuratus]
Length = 275
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 168/284 (59%), Gaps = 16/284 (5%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
F+ P+ Y+++ L E +RPD R L R+T +++G++++A GSAL K+G+TT++ IK
Sbjct: 5 FKTAQPVEYYKQFLKEEVRPDGRELGEIRSTILNVGSISTAHGSALVKLGNTTVVCGIKG 64
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E +P++E P +G + + +PP+CS +PG P+ A V ++ ++DT+ SS ++N ++L
Sbjct: 65 EFASPTVEEPKKGYLVPNVDLPPLCSAQFKPGPPSIQAQVTSQLVADTLLSSNLLNYEDL 124
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL--DDGKIVMLPEEQ 196
+ G W++Y D+ CLD DG + DA L++ +AA N+++P V++ D G L E
Sbjct: 125 CIKEGSMVWVLYCDMICLDYDGNIIDACLIALLAALRNVRLPVVTIAEDTG----LAELS 180
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
E+ VN+ FS + + +L DPT EEE + L+TV++ +
Sbjct: 181 STEDRSLNIVNQ------FAATTFS---VFDDSILLVDPTVEEEDLATGLMTVIVTQDGR 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L +++KPGG L+ T +QDCI + R KE+ ++++ + +E
Sbjct: 232 LCNIHKPGGTPLS-TDQIQDCIGRAQTRAKEICSLIDDTLDSIE 274
>gi|156230391|gb|AAI52249.1| MGC174638 protein [Danio rerio]
Length = 277
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 157/278 (56%), Gaps = 14/278 (5%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ PL Y L E+ RPD R L R TT+++ ++++ADGSAL KIG+TT++ IK
Sbjct: 4 GFKTAEPLEYHRSFLKENCRPDGRELGEFRPTTLNINSISTADGSALVKIGNTTVICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E+ P E+ ++G + + +PP+CS G P E A ++ ++D I SS +IN +E
Sbjct: 64 AELAVPPSEAQNKGYLVPNVDLPPLCSSRFGAGPPGEQAQAASQFIADVIESSDLINSEE 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + K W++Y DI CLD DG L DA + +AA Q+P V+++ K
Sbjct: 124 LCIEKAKLCWVLYCDIMCLDYDGNLLDACITVLLAALKTAQLPEVTIN-----------K 172
Query: 198 EENSEKEPVNKEKRKLTLGGIPF-SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
E + + + K KR+L + P S + + I+ DPT+EEES+ L+TVV D ++
Sbjct: 173 ETDLAEVDIEK-KRRLKINRHPVGSSFAVFDDSIIIVDPTAEEESLSTALMTVVTDEEDR 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEE 294
L +++KPGG L+ +Q CI R KE+ ++L++
Sbjct: 232 LCAVHKPGGTSLS-GEKLQHCINRAITRNKEIRKLLDK 268
>gi|410947312|ref|XP_003980394.1| PREDICTED: exosome complex component RRP43 [Felis catus]
Length = 257
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 149/283 (52%), Gaps = 31/283 (10%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ IK
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK +W++Y DI CLD DG + DA + +AA N
Sbjct: 124 LCISPGKLSWVLYCDIICLDYDGNILDACTFALLAALKN--------------------- 162
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
T L ++ ++ DPT EEE + +TVV+D +L
Sbjct: 163 ---------ELSANTYTFSSPYLFLDFLIPVTLLIVDPTGEEEHLATGTLTVVMDEEGKL 213
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L+KPGG+ L + +QDC++ R KE+ ++++E I M+
Sbjct: 214 CCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 255
>gi|390366534|ref|XP_783510.2| PREDICTED: exosome complex component RRP43-like [Strongylocentrotus
purpuratus]
Length = 279
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 169/286 (59%), Gaps = 16/286 (5%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
F+ P+ Y+++ L E +RPD R L R+T +++G++++A GSAL K+G+TT++ IK
Sbjct: 5 FKTAQPVEYYKQFLKEEVRPDGRELGEIRSTILNVGSISTAHGSALVKLGNTTVVCGIKG 64
Query: 79 EVMTPSLESPDEG-CVSIDF---HMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMIN 134
E +P++E P +G V + F +PP+CS +PG P+ A V ++ ++DT+ SS ++N
Sbjct: 65 EFASPTVEEPKKGYLVYLTFPNVDLPPLCSAQFKPGPPSIQAQVTSQLVADTLLSSNLLN 124
Query: 135 LKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPE 194
++L + G W++Y D+ CLD DG + DA L++ +AA N+++P V++D+ L E
Sbjct: 125 YEDLCIKEGNMVWVLYCDMMCLDYDGNIIDACLIALLAALRNVRLPVVTIDED--TGLAE 182
Query: 195 EQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSS 254
E+ VN+ FS + + +L DPT EEE + L+TV++
Sbjct: 183 LSSTEDRSLNIVNQ------FAATTFS---VFDDSILLVDPTVEEEDLATGLMTVIVTQD 233
Query: 255 NQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
+L +++KPGG L+ T +QDCI + R KE+ ++++ + +E
Sbjct: 234 GRLCNIHKPGGTPLS-TDQIQDCIGRAQTRAKEICSLIDDTLDSIE 278
>gi|335296834|ref|XP_001927006.3| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP43-like [Sus scrofa]
Length = 246
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 151/283 (53%), Gaps = 42/283 (14%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++ +ADGS+L K+G+TT++ IK
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSSLVKLGNTTVICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G + + + P+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFGAPPTDAPDKGYIVPNVDLSPLCSWRFRSGPPGEEAQVASQFIADVIXNSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CL+ DG + DA + +AA N+Q+P V+++ +
Sbjct: 124 LCISPGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVNINXXTL-------- 175
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
++ DPT EEE + +TVV+D +L
Sbjct: 176 ---------------------------------LIVDPTEEEEHLATGTLTVVMDEEGKL 202
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L+KPGG+ L + +QDC++ R KE+ ++++E M+
Sbjct: 203 CCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVFKSMK 244
>gi|291000993|ref|XP_002683063.1| exosome complex exonuclease RRP43 [Naegleria gruberi]
gi|284096692|gb|EFC50319.1| exosome complex exonuclease RRP43 [Naegleria gruberi]
Length = 279
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 167/289 (57%), Gaps = 19/289 (6%)
Query: 13 EMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTM 72
+++ +AFR++ PL ++ + L E +RPD R L+ R T +S G++ + +GS+L K G+T++
Sbjct: 4 QLDAEAFRKVHPLEFYNKFLPEGVRPDGRPLNMIRETVVSSGSLGNCEGSSLVKTGNTSV 63
Query: 73 LAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPA--EAAPVVAKQLSDTISSS 130
+ IK EVM P+ ++P G V I F P IC+ V E V+ ++L+ +
Sbjct: 64 VCGIKAEVMIPTEDAPKNGKVVISFDFPSICAADVTGNWEEINEKKSVIQQRLAGIFYNC 123
Query: 131 GMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPT--VSLDDGK 188
+++L +L + GKA W++Y D+YCL+ DG +FDAAL++ + A N+ +PT ++ DD
Sbjct: 124 NVMDLSQLCIEEGKAVWVLYADLYCLENDGNVFDAALIALLTALKNVSLPTCQITKDDEA 183
Query: 189 IVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVT 248
IV ENS KL L P L+ + + DPTSEEES++ +T
Sbjct: 184 IVT------NENS--------NIKLQLDHYPIPLSFGNLSEFTIVDPTSEEESLLAWKLT 229
Query: 249 VVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
+V + N+L SL+KPGG + S + C+ + ++R ++ ++E+++S
Sbjct: 230 IVYNERNELCSLFKPGGKSIK-QSTLNYCLEMAKKRTGKIISMIEKSVS 277
>gi|170039450|ref|XP_001847547.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
gi|167863024|gb|EDS26407.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
Length = 274
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 160/286 (55%), Gaps = 15/286 (5%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTML 73
M++ ++++ P++Y++ HL +IRPD R + R I+ G++ SADGS++ KIG+TT++
Sbjct: 1 MDLKTYKKIHPVKYYKDHLESNIRPDGREVGDLRPLAINFGSITSADGSSIVKIGNTTVV 60
Query: 74 AAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMI 133
IK E+ P P+ G + + + P+CSP RPG P+E A V + L+D I +SG +
Sbjct: 61 CGIKAELTPPKPVEPETGFLVPNIEISPLCSPKYRPGPPSEEAQVYSCSLADAILNSGCV 120
Query: 134 NLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLP 193
NLK+L + K W +Y D+ CLD DG +FDA++++ VAA L +P +
Sbjct: 121 NLKDLCITKEKLVWALYCDLVCLDHDGCVFDASVIALVAALHTLTLPRM----------- 169
Query: 194 EEQKEENSEKEPVNKEKRK-LTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLD 252
+ E+E + +E R+ LTL IP + + + I+ADPT+EEE++ + +T+ +
Sbjct: 170 -RHNADTDEREVLEEEPREALTLSSIPVTTSFAVLCGRIVADPTAEEEALATSTITITIC 228
Query: 253 SSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISG 298
+ L + K GG + + CI +R K + +++ +
Sbjct: 229 DAT-LSYINKSGGEPVE-QELLDQCIENAMKREKSVRALIKTMVKN 272
>gi|301109940|ref|XP_002904050.1| exosome complex exonuclease RRP43, putative [Phytophthora infestans
T30-4]
gi|262096176|gb|EEY54228.1| exosome complex exonuclease RRP43, putative [Phytophthora infestans
T30-4]
Length = 283
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 161/282 (57%), Gaps = 16/282 (5%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTML 73
D +++LFP Y + LA +RPD R++ R + + +A S+L K+G T++L
Sbjct: 13 FNTDMYKKLFPAEYMRKCLANKVRPDTRTIEATRAVQLQTDVIQTAASSSLVKLGKTSVL 72
Query: 74 AAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMI 133
AIK+ V TP++ +PD+G ++I H+ P+CS GRP+E A + QL+ I+ S ++
Sbjct: 73 TAIKLAVGTPAVATPDQGELAIQVHLSPLCSNRFTVGRPSEEAQSIGSQLTRVIAGSRVV 132
Query: 134 NLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD--DGKIVM 191
++ LS+V G++AW + +D+Y +D DG + DAAL S +AA L++P S++ D + +
Sbjct: 133 EMESLSIVKGQSAWKLMVDVYGVDHDGNVLDAALTSIIAALKTLKLPATSVNEVDNVVSI 192
Query: 192 LPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVL 251
+P+ + P+ E ++ + + + +L DPTS EE + + ++
Sbjct: 193 VPD------GDATPLRVEHG-------AYATSFAMVDDVVLIDPTSAEEGLSSAVFSLSY 239
Query: 252 DSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILE 293
+ QL ++K GG+++A S +Q C+ + ++ KEL ++++
Sbjct: 240 STDGQLCGVHKAGGSIVA-PSVMQQCMTIAKRNTKELAKLVD 280
>gi|170056939|ref|XP_001864258.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
gi|167876545|gb|EDS39928.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
Length = 274
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 147/253 (58%), Gaps = 14/253 (5%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTML 73
M++ ++++ P++Y++ HL +IRPD R + R I+ G++ SADGS++ KIG+TT++
Sbjct: 1 MDLKTYKKIHPVKYYKDHLESNIRPDGREVGDLRPLAINFGSITSADGSSIVKIGNTTVV 60
Query: 74 AAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMI 133
IK E+ P P+ G + + + P+CSP RPG P+E A V + L+D I +SG +
Sbjct: 61 CGIKAELAPPKPVEPETGFLVPNIEISPLCSPKYRPGPPSEEAQVYSCSLADAILNSGCV 120
Query: 134 NLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLP 193
NLK+L + K W +Y D+ CLD DG +FDA++++ VAA L +P +
Sbjct: 121 NLKDLCITKEKLVWALYCDLVCLDHDGCVFDASVIALVAALHTLTLPRM----------- 169
Query: 194 EEQKEENSEKEPVNKEKRK-LTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLD 252
+ E+E + +E R+ LTL IP + + + I+ADPT+EEE++ +T+ +
Sbjct: 170 -RHNADTDEREVLEEEPREALTLSSIPVTTSFAVLCGRIVADPTAEEEALATCTITITIC 228
Query: 253 SSNQLVSLYKPGG 265
+ L + K GG
Sbjct: 229 DAT-LSYINKSGG 240
>gi|118792101|ref|XP_320154.3| AGAP012402-PA [Anopheles gambiae str. PEST]
gi|116116739|gb|EAA00202.3| AGAP012402-PA [Anopheles gambiae str. PEST]
Length = 274
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 164/287 (57%), Gaps = 17/287 (5%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTML 73
M++ F+ L P++Y++ +L +IRPD R L R IS + SADGSA+ K+G+TT++
Sbjct: 1 MDLKTFKLLHPVKYYKDYLENNIRPDGRELEELRPLAISFDVIKSADGSAIVKVGNTTVV 60
Query: 74 AAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMI 133
IK E+ TP+ +P G + + + P+ SP RPG P + A V ++ ++D IS++ I
Sbjct: 61 CGIKAELATPNALAPRHGFLVPNVDLSPVSSPSYRPGPPCDEAQVYSQSVADAISNARCI 120
Query: 134 NLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLP 193
+L++L + GK W +Y D+ CLD DG + DAA+++ VAAF +++PT+ +
Sbjct: 121 DLQQLCISPGKLVWCLYCDLVCLDHDGCVLDAAIIALVAAFHTVKLPTIQYNSDT----- 175
Query: 194 EEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDS 253
EE + + S P LT+ +P + + ++ ++ADPT+EEE + T +TV +
Sbjct: 176 EETEADTSRLLP-------LTVDCVPVTTSFVMVAGRLIADPTTEEEKLASTTLTVTV-- 226
Query: 254 SNQLVSLYKPGGAVLAYTSAVQDCI--ALTRQR-VKELHQILEEAIS 297
S+ +S + G + ++ C A+ R+R VK++ Q ++ S
Sbjct: 227 SDGKMSFFNQSGGDPMDSRTLKKCTDSAIKRERSVKKMIQTMQRKSS 273
>gi|328773489|gb|EGF83526.1| hypothetical protein BATDEDRAFT_9008 [Batrachochytrium
dendrobatidis JAM81]
Length = 285
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 161/294 (54%), Gaps = 21/294 (7%)
Query: 7 SEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAK 66
S+D ++ D F+++ PL Y R + E +R D R L RNT + G + SA GS K
Sbjct: 9 SKDSGFVLDPDTFKKIQPLEYHRRFIQEGVRADGRPLLHFRNTELDFGPITSASGSVSVK 68
Query: 67 IGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDT 126
+G T+++ AIK E+ P+ P +G + + +P +C+ RPG P E A ++ L++
Sbjct: 69 VGDTSVICAIKAELAEPAPTLPYQGYLVPNVDLPALCASHFRPGPPCELAQSISTFLNNI 128
Query: 127 ISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD 186
ISS +++L+ L +V GK W++Y DI CL+ G +FDA++ + +AA N+++P V++ D
Sbjct: 129 ISSGNVLDLESLCVVPGKVVWVLYADIVCLNYAGNIFDASVDALIAALCNVKLPEVTISD 188
Query: 187 GKIVMLPEEQKEENSEKEPV--NKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIM 243
E PV N + L L I S T I +LADPT EEE ++
Sbjct: 189 ---------------ESAPVINNLPAKPLKLNRILISSTFAIFDGQTLLADPTHEEEPLV 233
Query: 244 ETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQD-CIALTRQRVKELHQILEEAI 296
+ VT+V+D + + +++KPGG ++ T AV D C+ L + R +++ +
Sbjct: 234 SSTVTIVVDDKDCICAIHKPGG--VSITKAVIDECLTLAKSRTPSFMKLISNTV 285
>gi|440790324|gb|ELR11607.1| exosc8 protein [Acanthamoeba castellanii str. Neff]
Length = 278
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 166/296 (56%), Gaps = 30/296 (10%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTML 73
ME++AFR+L P ++ + L S+RPD R+LS+AR TTI+ G+V +A GS+ KIG+T++
Sbjct: 1 MEIEAFRKLHPAEFYRKFLVHSVRPDGRNLSKARKTTITAGSVKTACGSSFVKIGNTSVS 60
Query: 74 AAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMI 133
A +K E +P +++ + P+CSP +PG+P+E + +A L+ + ++ ++
Sbjct: 61 AGVKAECGLAPPTTPG----NVNVELTPLCSPNFKPGKPSELSQYIATILNRLVRTTDLV 116
Query: 134 --------NLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP---TV 182
+ +E S W +Y+D+YCLD DG +FDA L++ ++A +N+++P V
Sbjct: 117 DESVLRIEDKEEQSKERKAMVWYLYVDMYCLDYDGNVFDACLIALLSALANVRLPAARVV 176
Query: 183 SLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEES 241
S DD V+ E L L P LT I + Y+LADPT+EEES
Sbjct: 177 SKDDNFTVVTTGEA-------------NIGLRLRHFPIPLTFAIFDEIYVLADPTAEEES 223
Query: 242 IMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
+ + T++ + ++ S+ KPGG L+ S +++C+ + RV E+ +L ++
Sbjct: 224 LAGSTFTIIYNDKKEICSVLKPGGTTLS-DSTLKECMERAKVRVDEVMPLLAHTMA 278
>gi|449681001|ref|XP_002158932.2| PREDICTED: exosome complex component RRP43-like [Hydra
magnipapillata]
Length = 276
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 151/277 (54%), Gaps = 13/277 (4%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
F+ PL Y++ L E+IRPD R+L R T +++ ++ +A GS L +IG+T ++ IK
Sbjct: 5 FKIARPLEYYKEFLKENIRPDGRALDEYRKTIVNINSIKTASGSGLVRIGNTIVVCGIKA 64
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ PS+E +EG + +P +CS RPG P++ A +++ +++T+ + +INLK+L
Sbjct: 65 ELAEPSVEKTNEGYFVPNVDLPALCSHEFRPGPPSDQAQAMSQLVAETVENCKLINLKKL 124
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+ K W++Y DI C+ DG L DA + S A N ++P V+++ E
Sbjct: 125 CIKEKKLCWVIYADIICISHDGNLIDAIIASLYIALLNTKLPVVTIN------------E 172
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLV 258
E E E+ L L S T L N +L DPT EEE + + +T++L ++
Sbjct: 173 ETGSPEASPTEQFTLELTTRLSSTTVELIDNKLLVDPTYEEEQLSLSSLTIILGDEKNII 232
Query: 259 SLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEA 295
S+YKPGG + S V+ CI R +EL ++ EA
Sbjct: 233 SMYKPGGCSVNEDS-VRTCIKYAIHRAEELDSLIHEA 268
>gi|302686574|ref|XP_003032967.1| hypothetical protein SCHCODRAFT_76318 [Schizophyllum commune H4-8]
gi|300106661|gb|EFI98064.1| hypothetical protein SCHCODRAFT_76318 [Schizophyllum commune H4-8]
Length = 291
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 163/283 (57%), Gaps = 17/283 (6%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTML 73
++ F+RL P Y+ER L E +RPD R R+ +++G++++ADGS+L ++G TT++
Sbjct: 24 LKASVFQRLHPRIYYERFLEERVRPDGREFDAWRDVAVNVGSISTADGSSLVRLGDTTIV 83
Query: 74 AAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMI 133
+K E+ P L+SP++G + + +P ICSP +PG P E A V++ +L++ +++ ++
Sbjct: 84 CGVKAEIAQPDLDSPEDGFIVPNVDLPAICSPKFKPGPPTEEAQVLSDRLNEVLTAHDVL 143
Query: 134 NLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLP 193
L + GKAAW++Y+D C++ DG FDA L++ +AA K LP
Sbjct: 144 PTSSLIIHPGKAAWVLYIDATCINYDGNAFDATLIAMIAAL-------------KSTRLP 190
Query: 194 EEQKEENSEKEPVNKEKRK-LTLGGIPFSLTC-ILHKNYILADPTSEEESIMETLVTVVL 251
+ +E++ K ++ R LTL +P +++ + + + I++D TS EE +M+T VTV+L
Sbjct: 191 RAKYDEDTGKVTCSRHDRDPLTLTNLPIAMSFGVFNGDTIMSDLTSFEEPLMDTNVTVIL 250
Query: 252 DSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEE 294
++S+ + G + S V CIA +R L + + E
Sbjct: 251 GQDGGVLSVTQAG--MGGGESLVDSCIASASKRRSFLAEYIYE 291
>gi|449269974|gb|EMC80708.1| Exosome complex exonuclease RRP43, partial [Columba livia]
Length = 277
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 162/284 (57%), Gaps = 21/284 (7%)
Query: 24 PLRYFERHLAESIRPDARSLSRARNTTISMG-------AVASADGSALAKIGSTTMLAAI 76
PL Y+ R L E+ RPD R L R TT+++G ++ +ADGSAL K+G+TT++ +
Sbjct: 4 PLEYYRRFLKENCRPDGRELGEFRATTVNIGNTVSLSGSITTADGSALVKLGNTTVICGV 63
Query: 77 KMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLK 136
K E+ P+ +S ++G + + +P +CS R G P E A ++ ++D I +S MI +
Sbjct: 64 KAELAAPAADSANKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADVIENSQMIAKE 123
Query: 137 ELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQ 196
+L + GK AW++Y DI CLD DG + DA+ + +AA N+Q+P+V+++
Sbjct: 124 DLCIASGKLAWVLYCDIICLDYDGNILDASAFALLAALKNVQLPSVTIN----------- 172
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSN 255
EE E K+K L + P + + + ++ DPT+EEE + VT+V D +
Sbjct: 173 -EETGLSEVNLKQKNPLIIRKHPVATSFAVFDDTLLIVDPTAEEEDLATGTVTIVTDDED 231
Query: 256 QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
+L S++KPGG+ L + +QDCI R KE+ +++++ I +
Sbjct: 232 KLCSVHKPGGSPLT-GAKLQDCITRAITRHKEVKKLIDKVIKSI 274
>gi|444726907|gb|ELW67422.1| Exosome complex component RRP43 [Tupaia chinensis]
Length = 248
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 142/251 (56%), Gaps = 13/251 (5%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
F+ + PL Y+ + L E+ PD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 5 FKTVEPLEYYRKFLKENCHPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKA 64
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E P ++PD+G + + +PP+CS R G P E A V + + I +S +I ++L
Sbjct: 65 EFAAPPTDTPDKGYIIPNVDLPPLCSSRFRSGPPGEEAQVAGQFTAYVIKNSQIIQKEDL 124
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+ GK AW++Y D+ CLD DG + DA + +AA N+Q+P V+++ E
Sbjct: 125 FISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------E 172
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
E + E K+K L + P + + + ++ DPT EEE + + VV+D +L
Sbjct: 173 ETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLARGTLMVVMDEEGKL 232
Query: 258 VSLYKPGGAVL 268
L+KPGG+ L
Sbjct: 233 CCLHKPGGSGL 243
>gi|62734004|gb|AAX96113.1| expressed protein [Oryza sativa Japonica Group]
Length = 165
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/118 (64%), Positives = 99/118 (83%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
L+ EMEV+A+RRLFPL + ERHL ES+RPDAR + AR TT+++ AV+SA GSAL ++G
Sbjct: 13 LAGEMEVEAYRRLFPLAFLERHLRESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGD 72
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI 127
T MLA+IK+EVM+PS E+PDEG ++++FHMPPICSPLVRPGRPAE APV++K L D +
Sbjct: 73 TAMLASIKLEVMSPSGEAPDEGSIAVEFHMPPICSPLVRPGRPAEVAPVISKNLEDIL 130
>gi|307187131|gb|EFN72375.1| Exosome complex exonuclease RRP43 [Camponotus floridanus]
Length = 284
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 158/287 (55%), Gaps = 18/287 (6%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
++ + P++Y + HL + IRPD R R ++++ ++ AD SA+ K+G T+ + IK
Sbjct: 5 YKTIHPVKYLQDHLEQGIRPDGRKFLSFRPVSVNVSSIVQADSSAIFKLGDTSAVCGIKA 64
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ TP + PD G + + + P+CSP RPG P+E A V++K + +S+S ++LK+L
Sbjct: 65 ELATPKADIPDHGYIVPNVELSPLCSPKFRPGPPSEQAQVLSKLIDIVLSNSRALDLKDL 124
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD--GKIVMLPEEQ 196
+ K W++Y DI CL+ +G++ DA + + +AA L +P ++ + G IV PE +
Sbjct: 125 CICKNKLVWVLYCDILCLNYNGSVIDACIGAMIAALKTLTLPEINYNSETGVIVTHPENR 184
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSN 255
K T+ +P S + I K +L DP+ +EE + T ++V+D
Sbjct: 185 K--------------AFTVRTLPVSASFAIFEKQLLLVDPSDDEEDMSSTRFSIVMDDEE 230
Query: 256 QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
++ ++KPGG ++ + + +T+ R K + ++ AIS + ++
Sbjct: 231 EICYIHKPGGIPISQNLLCKG-LEMTKVRAKSIRSVINAAISTLNVN 276
>gi|405968426|gb|EKC33499.1| Exosome complex exonuclease RRP43 [Crassostrea gigas]
Length = 300
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 150/279 (53%), Gaps = 17/279 (6%)
Query: 24 PLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTP 83
P Y+ + L + +RPD R L R T I++G +++A+GSAL KIG+TT++ IK E P
Sbjct: 36 PKEYYRKFLEQEVRPDGRELGETRTTVINVGCLSTANGSALVKIGNTTVMCGIKAECAKP 95
Query: 84 SLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGG 143
E P G + + + P+CSP RPG P E A V+++ + + + +S I++K+L + G
Sbjct: 96 KTEEPAHGFIVPNVELSPMCSPQFRPGMPGEQARVLSQFMLEVMKNSNCIDVKKLCIEPG 155
Query: 144 KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL--DDGKIVMLPEEQKEENS 201
+ W +Y DI CLD G + DA +LS +AA +N +P V L D K P++
Sbjct: 156 RLVWTLYCDIVCLDYGGNVTDACVLSLLAALNNTVLPNVVLNKDTDKFEAFPDQSTTLQL 215
Query: 202 EKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ PV+ S I + DPT+EEE++ +T+V + ++L ++
Sbjct: 216 QSSPVS-------------STFAIFDDEILFVDPTAEEENLATGQLTIVT-TDDKLCMVH 261
Query: 262 KPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
KPGG L CI +R KE+ +++++ IS +E
Sbjct: 262 KPGGTPLTDQQLCL-CIKQAFERTKEVLRLIDDTISSVE 299
>gi|392576624|gb|EIW69754.1| hypothetical protein TREMEDRAFT_23063, partial [Tremella
mesenterica DSM 1558]
Length = 236
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 144/247 (58%), Gaps = 14/247 (5%)
Query: 11 SSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGST 70
SS ++RL P +Y R LA+ RPD R L+ R +++ G++++ADGS+L ++GST
Sbjct: 2 SSTAAAAVYKRLHPQQYLSRFLAKGYRPDGRRLNEFREASLNTGSISTADGSSLVRLGST 61
Query: 71 TMLAAIKMEVMTPSLESPDEGCVSI-DFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T++ IK E+ P+ SPD+G + + + +P +CSP +PG P++ A V++ L D + S
Sbjct: 62 TVVCGIKAEIAEPTTSSPDKGYLIVPNVDLPALCSPRYKPGPPSDEAQVLSVWLYDLLIS 121
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189
S +++L L +V GKA W +Y+D+ C++ DG FDA +L+ +AA N ++ +D
Sbjct: 122 SHVVDLSSLCIVPGKAVWALYIDVVCINYDGNAFDATVLAVMAALRNTKLHGARYND--- 178
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTC-ILHKNYILADPTSEEESIMETLVT 248
E + + EK L LG IP + + I ++ ++L DPTS E + T ++
Sbjct: 179 ---------ETGKVNLIRGEKYSLKLGRIPLAASFGIFNETHLLPDPTSFESPHLSTTIS 229
Query: 249 VVLDSSN 255
+ LD SN
Sbjct: 230 ICLDESN 236
>gi|383856603|ref|XP_003703797.1| PREDICTED: exosome complex component RRP43-like [Megachile
rotundata]
Length = 278
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 167/281 (59%), Gaps = 19/281 (6%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
++ + P++Y + HLA+ +RPD R R+ ++++ ++ AD SA+ KIGSTT++ IK
Sbjct: 5 YKTIHPVKYLQDHLAQDVRPDGRQFLSFRSVSVNISSITHADSSAIFKIGSTTVVCGIKA 64
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ TP ESP+ G + + + P+CSP RPG P++ A +++ +++ + +S I+LK+L
Sbjct: 65 ELTTPRTESPEYGYIVPNVELSPLCSPKFRPGPPSDQAQIISNLINNILINSAAIDLKDL 124
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTV--SLDDGKIVMLPEEQ 196
+ GK AW++Y D+ C++ DG++ DA + + AA + L +P V ++ G I +
Sbjct: 125 CICKGKLAWVLYCDLLCINYDGSVIDACVGALTAALNTLTLPEVVYNIQTGSISV----- 179
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSN 255
+S K K L++ +P S+T I + ++ADPT EEE++ +T+VL+
Sbjct: 180 ---HSTK------KISLSIKELPVSITFAIFNDQLLVADPTDEEENLCLGRLTIVLNKE- 229
Query: 256 QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
++ ++KPGG ++Y ++ + +++R + + ++ AI
Sbjct: 230 KICCIHKPGGIPISYDLFLKS-LTKSKKRAELVRSLINTAI 269
>gi|157107418|ref|XP_001649768.1| exosome complex exonuclease rrp43 (ribosomal RNA processing protein
43 [Aedes aegypti]
gi|108884054|gb|EAT48279.1| AAEL000659-PA [Aedes aegypti]
Length = 274
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 157/281 (55%), Gaps = 13/281 (4%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTML 73
M++ ++++ P++Y++ +L +IRPD R + R I+ ++ +ADGSA+ KIG+TT++
Sbjct: 1 MDLKTYKKIHPVKYYKDYLEHNIRPDGREIGDLRPLAINFDSIKTADGSAIVKIGNTTVV 60
Query: 74 AAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMI 133
IK E+ P PD G + + + P+ SP RPG P+E A V + L+D I +SG +
Sbjct: 61 CGIKAELAPPKPVEPDTGYLVPNIEISPLSSPKYRPGPPSEEAQVYSCSLADAILNSGCV 120
Query: 134 NLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLP 193
NLK+L + + W +Y D+ CLD DG +FDA++++ VAA L++P V + P
Sbjct: 121 NLKDLCITKEQLVWALYCDLVCLDHDGCIFDASVIALVAALHTLRLPPVKHN-------P 173
Query: 194 EEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDS 253
+ + E E + E+ L L IP + + + I+ADPT+EEE++ + +T+ +
Sbjct: 174 DTDEREVDE----DAERIPLKLNSIPVTTSFAVFGGRIIADPTAEEEALATSTITITICD 229
Query: 254 SNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEE 294
S L + K GG L + CI +R K + ++ +
Sbjct: 230 ST-LSYINKSGGDPLE-QELLDKCIENAMKREKSVRGLIRK 268
>gi|392590636|gb|EIW79965.1| hypothetical protein CONPUDRAFT_166613 [Coniophora puteana
RWD-64-598 SS2]
Length = 289
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 168/290 (57%), Gaps = 17/290 (5%)
Query: 4 PNASEDLSSE-MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGS 62
P +D SE ++ F+RL P Y ER+++E +RPD R R ++++G++++A GS
Sbjct: 8 PEPPKDPQSEAIKAQIFQRLHPRSYLERYISEDVRPDGRGFEDWREVSVNVGSISTAHGS 67
Query: 63 ALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQ 122
AL ++G T ++ +K E+ P L+ P EG + + +P +CSP +PG PAE A +++++
Sbjct: 68 ALVRMGDTRIVCGVKAEIAEPELDKPHEGFLVPNLDLPALCSPKFKPGPPAEEAQILSER 127
Query: 123 LSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTV 182
L++ + +SG++ L+ L++ GKA W +Y+D CL+ DG FDAALL+ VAA N ++P
Sbjct: 128 LNEALVASGILPLESLAIHPGKAVWTIYIDAICLNFDGNAFDAALLAMVAALYNTRLPVA 187
Query: 183 SLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTC-ILHKNYILADPTSEEES 241
+ D E+ + KE L L P S + +L +L+DPTS EE
Sbjct: 188 TFD------------EDTGHTTCLRKETVPLELTCKPISTSFGMLDSLQVLSDPTSFEEP 235
Query: 242 IMETLVTVVLDSSNQLVSLYKPG-GAVLAYTSA--VQDCIALTRQRVKEL 288
+M+T V+VV++ L+++ + G G + S +++CI ++ RV L
Sbjct: 236 LMDTTVSVVVNEKGDLLAVNELGLGTMTTQKSGDLLKNCIEKSKLRVSNL 285
>gi|443926780|gb|ELU45348.1| Opa-interacting protein OIP2 [Rhizoctonia solani AG-1 IA]
Length = 294
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 159/294 (54%), Gaps = 29/294 (9%)
Query: 13 EMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTM 72
++E F+RL P YFER +AE RPD R + R+ I++G++++A+GS+L +IG +T+
Sbjct: 13 DLEASTFQRLHPRTYFERFIAEGFRPDGRKVDAWRDVRINVGSISTANGSSLVRIGDSTI 72
Query: 73 LAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQ---LSDTISS 129
+ +K E+ P LE P EG + + +P ICSP +PG PAE A +++++ L+ S
Sbjct: 73 VCGVKAEIAEPDLERPSEGFIVPNLDLPAICSPKFKPGPPAEEAQMLSEKITILTKLTYS 132
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSN------LQIPTVS 183
S I+ K L + GKAAW++Y+D C++ DG + DA +L+ VAA N + +PT
Sbjct: 133 SNAIDPKTLCIHPGKAAWVIYVDAVCINYDGNILDATMLAVVAALQNGILPARIPVPTYD 192
Query: 184 LDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTC-ILHKNYILADPTSEEESI 242
LD G+ E L L +P +++ I + ++++DP+S EE +
Sbjct: 193 LDTGRTTC--------------SRTETLPLALTHMPVTISFGIFDRAHLISDPSSFEEPL 238
Query: 243 METLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
++ +TV +D S+ + GG SA + QR +I+ EA+
Sbjct: 239 LDAAITVTIDVSSGAL-----GGINQVGFSAPSATLETITQRAITHSKIIAEAL 287
>gi|348667912|gb|EGZ07737.1| hypothetical protein PHYSODRAFT_529521 [Phytophthora sojae]
Length = 283
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 165/279 (59%), Gaps = 16/279 (5%)
Query: 17 DAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAI 76
D +++LFP Y + LA +RPD+R++ AR + V +A S+L K+G T++L AI
Sbjct: 16 DMYKKLFPAEYVRKCLASKVRPDSRTIEAARAVQLQTDVVQTAASSSLVKLGKTSVLTAI 75
Query: 77 KMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLK 136
K+ V TP++ +PD+G +++ H+ P+CS GRP+E + ++ QL+ I S ++ ++
Sbjct: 76 KLAVGTPAVATPDQGEIAVQVHLSPLCSNRFSVGRPSEESQSISSQLTRIIVGSRVVEME 135
Query: 137 ELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD--DGKIVMLPE 194
LS+V G++AW + +D+YC+D DG + DAAL S +AA L++P S++ D + ++P+
Sbjct: 136 SLSIVKGQSAWKLMVDVYCVDHDGNVLDAALTSIMAALKTLKLPATSVNEADNVVSIVPD 195
Query: 195 EQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSS 254
E + P+ E ++ + + ++ +L DPTS+EE + + ++ ++
Sbjct: 196 E------DATPLRVEH-------CAYATSFAVVEDSVLIDPTSDEEDLASAVFSLSYSTN 242
Query: 255 NQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILE 293
QL ++K GG ++A +Q C+ + ++ + L ++++
Sbjct: 243 GQLCGVHKAGGTIVA-PHVMQQCMQVAKRNTEALAKLVD 280
>gi|198426220|ref|XP_002120565.1| PREDICTED: similar to Exosome complex exonuclease RRP43 (Ribosomal
RNA-processing protein 43) (Exosome component 8) (p9)
(Opa-interacting protein 2) [Ciona intestinalis]
Length = 279
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 159/278 (57%), Gaps = 14/278 (5%)
Query: 17 DAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAI 76
D F+ + P+ Y++ L E+IRPD R+L + R TT+++G + +ADGSAL KIG+T ++ +
Sbjct: 3 DIFKHIQPVEYYKSFLKENIRPDTRTLQQIRKTTLNVGPITTADGSALVKIGNTMVMCGV 62
Query: 77 KMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLK 136
K E+ P+ E P +G + + +P +CS +PG P A V K L + I + ++N +
Sbjct: 63 KAELTQPTAEEPKKGIIVPNLDLPALCSSKFKPGPPNTQAQVGTKFLDNLIKIANLVNSE 122
Query: 137 ELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQ 196
+L +V K W++Y D+ CL+ DG + DAA+++ VAA ++ +P+V+L++
Sbjct: 123 DLCIVPDKLVWVLYCDVTCLNYDGCVIDAAVVALVAALRSVSLPSVTLNE---------- 172
Query: 197 KEENSEKEPVNKEKRKLTLGGIPF-SLTCILHKNYILADPTSEEESIMETLVTVVLDSSN 255
E ++ +N EK LT+ +P S +I+ DPT EE I +TVV D
Sbjct: 173 -ETDTPVTNIN-EKTPLTINCLPVASSFSFFESEHIITDPTLSEEDITSGCLTVVSDEHE 230
Query: 256 QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILE 293
L+ + +PGG + ++ CI + +R KE+H++ +
Sbjct: 231 NLLLVDRPGGVSIT-EDQLEICIQRSFKRTKEVHKLYK 267
>gi|426192626|gb|EKV42562.1| hypothetical protein AGABI2DRAFT_195867 [Agaricus bisporus var.
bisporus H97]
Length = 318
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 174/329 (52%), Gaps = 45/329 (13%)
Query: 1 MGLPNASEDLSSE-MEVDAFRRLFPLRYFERHLAESIRPDARSLSRA-----------RN 48
M A+ D SS+ ++ F+RL P Y ER L E++RPD R++ R+
Sbjct: 1 MATATAATDPSSDSLKAAIFQRLHPRVYLERFLTENVRPDGRAIGCVMDGMGVKGEIWRD 60
Query: 49 TTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVR 108
+I++G++ +ADGSAL ++G +T++ +K E+ P LE+PDEG + + +P +C P +
Sbjct: 61 VSINVGSINTADGSALVRMGGSTIVCGVKAEIAEPDLENPDEGFLVPNVDLPAMCHPKFK 120
Query: 109 PGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALL 168
PG P++ A V++++L +T++SS ++ K L + GK W +Y+D C++ DG +FDA L+
Sbjct: 121 PGPPSDEAQVLSERLFETLTSSNFMSPKSLVVHPGKFVWTLYVDATCINYDGNVFDATLI 180
Query: 169 SAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTC-ILH 227
+ V+A N ++P + E+ + + L L G+P + I
Sbjct: 181 AMVSALLNTRLPKAVYN------------EDTGQTMCYRESTSPLALFGLPLPTSFGIFD 228
Query: 228 KNYILADPTSEEESIMETLVTVVL-----------DSSNQLVSLYKPG---------GAV 267
+ +LADPT+ EE +++ +++V D QL+S+ + G G+
Sbjct: 229 SSQVLADPTAFEEPLLDGTISIVFGGADQNNSTPSDDDGQLLSVTQQGLGIVNDLNSGSG 288
Query: 268 LAYTSAVQDCIALTRQRVKELHQILEEAI 296
L ++ CI ++R EL +I+ EAI
Sbjct: 289 LGDKGVLEACIKAGKKRRVELAKIVREAI 317
>gi|393245799|gb|EJD53309.1| hypothetical protein AURDEDRAFT_110988 [Auricularia delicata
TFB-10046 SS5]
Length = 287
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 167/293 (56%), Gaps = 16/293 (5%)
Query: 5 NASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSAL 64
+AS ++ ++ F+RL P YFER L+ RPD R S R ++++G++ +A+GSAL
Sbjct: 4 DASSQPTNALDASIFQRLHPKAYFERFLSAGFRPDGRKTSDWREISVNVGSITTAEGSAL 63
Query: 65 AKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLS 124
++G TT++ +K E+ P L+ PDEG + + +P I SP +PG P+E A V++ +L
Sbjct: 64 VRLGDTTVVCGVKAEIAEPELDKPDEGFLVPNLDLPAISSPKFKPGAPSEEAQVLSNRLY 123
Query: 125 DTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL 184
D ++S ++ L L + GKA W ++LDI C++ DG FDA + +AVAA N ++P +
Sbjct: 124 DLLTSCDVLPLSSLCIEPGKAVWTIFLDIICINYDGNAFDATVAAAVAALKNARLPKATF 183
Query: 185 DDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTC-ILHKNYILADPTSEEESIM 243
+ EE + EK+ LTL IP +++ + +++ADP+S EE ++
Sbjct: 184 N------------EETRKTTCSRTEKQALTLNRIPLAMSFGVFDTLHLVADPSSFEEPLV 231
Query: 244 ETLVTVVLDSSNQLVSLYKPGGAVLAYTSA---VQDCIALTRQRVKELHQILE 293
+ +T+ +D+ + SL + G + A + +C+ ++R KEL +++
Sbjct: 232 SSTITIAVDAVGHICSLQQEGPVRVGDKDAETVIDECLLAAKKRRKELAPVID 284
>gi|380026683|ref|XP_003697074.1| PREDICTED: exosome complex component RRP43-like [Apis florea]
Length = 281
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 165/286 (57%), Gaps = 21/286 (7%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
++ + P++Y + HLA+ +RPD R R ++++ ++ AD SA+ KIG+TT++ IK
Sbjct: 5 YKIIHPVKYLQDHLAQDVRPDGRQFLSFRPISVNISSITHADSSAIFKIGNTTIVCGIKS 64
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ P ESP+ G + + +PP+CSP RPG P++ A V+ K + + + +S I+LKEL
Sbjct: 65 ELAVPKAESPECGYIVPNIELPPLCSPKFRPGPPSDQAQVITKLIENILRNSAAIDLKEL 124
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTV--SLDDGKIVMLPEEQ 196
+ GK W++Y D+ C++ DG++ DA + + A + L +P + +++ G +
Sbjct: 125 CVYKGKLVWVLYCDLVCINYDGSIIDACIGALTATLNTLTLPEIFYNIETGHV------- 177
Query: 197 KEENSEKEPVNKEKR-KLTLGGIPFSLTCILHKNYIL-ADPTSEEESIMETLVTVVLDSS 254
+N KR K + +P S+T + N +L ADPT +EES+ +T+V++
Sbjct: 178 --------SINSTKRIKFPIKALPVSITFAIFDNQLLIADPTDDEESLCLGKLTIVMNEE 229
Query: 255 NQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
++ ++KPGG ++ ++ I +R+R + + +++ AIS M+
Sbjct: 230 -KICCIHKPGGIPISQDIFLKSLIK-SRKRAELVRSLIDSAISTMK 273
>gi|325180002|emb|CCA14404.1| exosome complex exonuclease RRP43 putative [Albugo laibachii Nc14]
Length = 293
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 156/285 (54%), Gaps = 16/285 (5%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
+R+LF Y + L IR DAR+ +R+ I + S S+L K+ +T+++ I++
Sbjct: 19 YRKLFVEEYTTKCLENEIRTDARTFDASRSMHIQTNVINSCYSSSLVKLKNTSVITGIQL 78
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
V TP+++ EG + I H+ P+CS GR E A V+ +S I + MI+L +L
Sbjct: 79 AVGTPAIDKQTEGDIVIQIHLTPLCSTRFNVGRACEEANAVSSHISKIIRRARMIDLTQL 138
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPT--VSLDDGKIVMLPEEQ 196
S+ GK+AW V +D+YC+D DG +F+ +L+S + A L++P VS D K+ + +E
Sbjct: 139 SIEKGKSAWNVMIDVYCIDYDGNIFEVSLMSIMTALQKLRLPATRVSEVDHKVEIDSDE- 197
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
E R L + + + + + ++L DPTSEEE + + ++ + N+
Sbjct: 198 ------------ESRPLIMQRVLCATSFAIVNEHVLIDPTSEEEGLASSTFNIIYTTENE 245
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEI 301
L +YKPGG +++ + ++ C+ + R K++ + L E++S +I
Sbjct: 246 LFGVYKPGGTLIS-PAILKKCLDTAKNRTKKVAKQLLESLSQGDI 289
>gi|342321513|gb|EGU13446.1| Hypothetical Protein RTG_00162 [Rhodotorula glutinis ATCC 204091]
Length = 298
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 166/304 (54%), Gaps = 25/304 (8%)
Query: 6 ASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRA-------RNTTISMGAVAS 58
A++ SS + FR LFP Y ER ++E +RPD R + R+ +++ G+V++
Sbjct: 2 AAQAASSNLTPALFRSLFPQPYLERFISEGVRPDGRPVGEQAAAADAWRDVSVNTGSVST 61
Query: 59 ADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPV 118
A SAL ++G T+++ + +E+ P L P+EG + + + P+CSPL RPG P + A V
Sbjct: 62 APSSALVRLGKTSVVCGVTLEIAPPDLARPNEGFIVPNVDLSPLCSPLFRPGPPPDEAQV 121
Query: 119 VAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQ 178
++ +L D + SS ++ L L + GKA W+VY+D+ CL+ DG + DAA+L+AV A NL+
Sbjct: 122 LSSRLRDVLLSSNILPLSSLVIEPGKAVWVVYIDVVCLNYDGGVLDAAVLAAVGALRNLR 181
Query: 179 IPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSE 238
P + D V E E +E+ P ++ + PFS++ + +L DPT
Sbjct: 182 FPETTFD----VDTSEVTCERVAEEHPGSRISGRRE----PFSVSFGVFNGTLLPDPTLF 233
Query: 239 EESIMETLVTVVLD----SSNQ------LVSLYKPGGAVLAYTSAVQDCIALTRQRVKEL 288
E + + +TVVL SS + L+S+Y+ G + ++ CIA+ R R EL
Sbjct: 234 EAKLCSSEITVVLGAPAASSTKSLAKAPLLSVYQAGAPLENGKEVLRRCIAMARARAAEL 293
Query: 289 HQIL 292
Q L
Sbjct: 294 QQSL 297
>gi|442763221|gb|JAA73769.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp43,
partial [Ixodes ricinus]
Length = 257
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 141/234 (60%), Gaps = 14/234 (5%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSI 95
+R D R L R+T +++G++++ADGSAL K+G TT++ IK E+ PS+ P G +
Sbjct: 24 VRSDGRDLGERRDTALNIGSISTADGSALVKMGCTTVVCGIKAELAEPSVSEPKCGFIVP 83
Query: 96 DFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYC 155
+ +PP+CSP+ +PG P A V++ + D +S+S ++L++L + K W + LD+ C
Sbjct: 84 NVDLPPLCSPMFKPGPPGPQAQVLSTMMLDVLSNSNCVDLEKLCIEEAKLCWCLQLDLTC 143
Query: 156 LDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTL 215
LD DG L +A +L+A AA S+L +P VS +GK+ +L E +E ++
Sbjct: 144 LDYDGNLAEACVLAATAALSSLTLPKVSTAEGKVDVLLE-------------REAVGVSP 190
Query: 216 GGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
G + S +L + ++ADPT EEE + + TVVL + + L +++KPGG+ L+
Sbjct: 191 GPLAASFA-VLADDVVVADPTHEEECLAQETFTVVLAADDTLCTVHKPGGSFLS 243
>gi|298705981|emb|CBJ29102.1| similar to exosome component 6 [Ectocarpus siliculosus]
Length = 274
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 154/285 (54%), Gaps = 17/285 (5%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVAS--ADGSALAKIGSTT 71
MEV+AF+RL P ++ R + +RPD R L R ++ +G ++ SAL +GST
Sbjct: 1 MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTK 60
Query: 72 MLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSG 131
+LA I ++V PS +P G + ++ + P+ S GRP+E A V++ + ++I SG
Sbjct: 61 VLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAHVLSTFVKNSIVESG 120
Query: 132 MINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVM 191
+ L +L++ G AW + +DI CL DG L DA L++A+ A LQ+P D +I +
Sbjct: 121 ALVLTDLAIDDGAFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFV 180
Query: 192 LPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVL 251
+E P +L + +P LTC + I+ADP+ EE ++ T VTVV
Sbjct: 181 ---------TEDTPT-----QLVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVTVVS 226
Query: 252 DSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
S ++ ++KPGG+ A + +C+ L +Q K+L Q L A+
Sbjct: 227 TSEGKVCGVHKPGGSC-ASGKQLNECLQLCQQHAKQLTQTLAAAV 270
>gi|239790360|dbj|BAH71746.1| ACYPI003501 [Acyrthosiphon pisum]
Length = 267
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 154/270 (57%), Gaps = 16/270 (5%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + +LA + R D R L R+ ++++ + +ADGSA+ KIG+T ++ IK E+ P E
Sbjct: 12 YTKEYLALNKRNDGRELMNFRDASLNLNTIHTADGSAVVKIGNTAVVCGIKAELGVPKAE 71
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+PD G + ++ +P +CS +RPG P + A + L++ ++ +++L++L + K
Sbjct: 72 APDIGYLLVNIELPSLCSKKIRPGIPCDEAMQMTSFLNEVCNNCKILDLQQLCISVDKLV 131
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W++ DIYCL+ DG++ DA L++ ++A ++IP V D + +E+ V
Sbjct: 132 WVLSCDIYCLNYDGSVLDACLIALLSALQTVKIPEVKYD-------------KETEETTV 178
Query: 207 NKEKRKLTLGGIPFSLTC-ILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
+ L + +P S T + ++ YILADPT EEE + + +TVV + S + SL+KPGG
Sbjct: 179 IENYIPLKVNSLPVSSTFGVFNEKYILADPTEEEEQLCVSKLTVVTNGS-LIFSLHKPGG 237
Query: 266 AVLAYTSAVQDCIALTRQRVKELHQILEEA 295
+ S +Q+CI R K + Q+++ A
Sbjct: 238 EFIK-DSQIQNCIKHVNNRAKTICQLIKAA 266
>gi|193664372|ref|XP_001942983.1| PREDICTED: exosome complex exonuclease RRP43-like [Acyrthosiphon
pisum]
Length = 267
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 154/270 (57%), Gaps = 16/270 (5%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + +LA + R D R L R+ ++++ + +ADGSA+ KIG+T ++ IK E+ P E
Sbjct: 12 YTKEYLALNKRNDGRELMNFRDASLNLNTIHTADGSAVVKIGNTAVVCGIKAELGVPKAE 71
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+PD G + ++ +P +CS +RPG P + A + L++ ++ +++L++L + K
Sbjct: 72 APDIGYLLVNIELPSLCSKKIRPGIPCDEAMQMTSFLNEVCNNCKILDLQQLCISVDKLV 131
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W++ DIYCL+ DG++ DA L++ ++A ++IP V D + +E+ V
Sbjct: 132 WILSCDIYCLNYDGSVLDACLIALLSALQTVKIPEVKYD-------------KETEETTV 178
Query: 207 NKEKRKLTLGGIPFSLTC-ILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
+ L + +P S T + ++ YILADPT EEE + + +TVV + S + SL+KPGG
Sbjct: 179 IENYIPLKVNSLPVSSTFGVFNEKYILADPTEEEEQLCVSKLTVVTNGS-LIFSLHKPGG 237
Query: 266 AVLAYTSAVQDCIALTRQRVKELHQILEEA 295
+ S +Q+CI R K + Q+++ A
Sbjct: 238 EFIK-DSQIQNCIKHANNRAKTICQLIKAA 266
>gi|66529825|ref|XP_624000.1| PREDICTED: exosome complex exonuclease RRP43-like [Apis mellifera]
Length = 281
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 165/286 (57%), Gaps = 21/286 (7%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
++ + P++Y + HLA+ +RPD R R ++++ ++ AD SA+ KIG+TT++ IK
Sbjct: 5 YKIIHPVKYLQDHLAQDVRPDGRQFLSFRPISVNISSITHADSSAIFKIGNTTIVCGIKS 64
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ P ESP+ G + + +PP+CSP RPG P++ A V+ K + + + +S I+LKEL
Sbjct: 65 ELAVPKAESPECGYIVPNIELPPLCSPKFRPGPPSDQAQVITKLVENILRNSAAIDLKEL 124
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTV--SLDDGKIVMLPEEQ 196
+ GK W++Y D+ C++ DG++ DA + + A + L +P + +++ G +
Sbjct: 125 CVYKGKLVWVLYCDLVCINYDGSIIDACIGALTATLNTLTLPEIFYNVETGHV------- 177
Query: 197 KEENSEKEPVNKEKR-KLTLGGIPFSLTCILHKNYIL-ADPTSEEESIMETLVTVVLDSS 254
+N KR + + +P S+T + N +L ADPT +EES+ +T+V++
Sbjct: 178 --------SINSTKRIRFPIKALPVSITFAIFDNQLLIADPTDDEESLCLGKLTIVMNEE 229
Query: 255 NQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
++ ++KPGG ++ ++ I +++R + + +++ AIS M+
Sbjct: 230 -KICCIHKPGGIPISQDIFLKSLIK-SKKRAELVRSLIDSAISTMK 273
>gi|353239012|emb|CCA70939.1| related to Exosome complex exonuclease RRP43 [Piriformospora indica
DSM 11827]
Length = 279
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 149/282 (52%), Gaps = 22/282 (7%)
Query: 15 EVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLA 74
++ F+RL P Y +R L E +RPD R R ++ G++++ADGSAL ++G TT++
Sbjct: 3 DISTFQRLHPRAYLQRFLDEHLRPDGRRPLDCRPLELTTGSISTADGSALVRLGETTIVC 62
Query: 75 AIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMIN 134
+K E+ P L++P G + + + IC+ +PG P+E A ++++QL+ I+ S +
Sbjct: 63 GVKAEIAEPDLDAPTRGFIVPNVEISAICAARFKPGPPSEEAQIISEQLNQIIAKSKCLP 122
Query: 135 LKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPE 194
L L + KA W +Y+D C++ DG DA LL+ A SN Q+P DD K ++L
Sbjct: 123 LDSLCIEPRKAVWTIYIDAVCINYDGNALDATLLAMTTALSNTQLPQARYDDDKKMVLCS 182
Query: 195 EQKEENSEKEPVNKEKRKLTLGGIPFSLTC-ILHKNYILADPTSEEESIMETLVTVVLDS 253
K L L +P + T I ++L DPTS EE ++E+ VTVVL
Sbjct: 183 RMN------------KTPLALKTLPTATTFGIFESKHLLVDPTSFEEPLLESTVTVVLCG 230
Query: 254 SNQL----VSLYK---PGGAVLAYTSAVQDCIALTRQRVKEL 288
S + V L + P G + TS +CI L ++R E+
Sbjct: 231 SEAISVSQVGLGRETSPSGQ--SSTSLYTECIELAQKRQAEI 270
>gi|307207928|gb|EFN85487.1| Exosome complex exonuclease RRP43 [Harpegnathos saltator]
Length = 279
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 162/290 (55%), Gaps = 24/290 (8%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
++ + P+++ + H + IRPD R R +I++ ++ AD SA+ K+GSTT++ IK
Sbjct: 5 YKTIHPVKHLQDHFVQDIRPDGRKFLSFRPISINVSSIVQADSSAIFKLGSTTVVCGIKA 64
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ P ++P+ G + + + P+CSP RPG P+E A V++K + + +S I+LK+L
Sbjct: 65 ELAIPKTDTPECGYIIPNVELSPLCSPKFRPGPPSEQAQVISKLIDIILKNSTAIDLKDL 124
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTV--SLDDGKIVMLPEEQ 196
+ K W++Y D+ CL+ +G++ DA + AA L +P V +L+ G V+ P
Sbjct: 125 CICKRKLVWVLYCDMLCLNYNGSVIDACTGALTAALKTLTLPEVNYNLETGVTVVHP--- 181
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSN 255
K+++ + +P S++ I K ++ DPT EEES+ ++VV+DS
Sbjct: 182 -----------KKRKPFVMKMLPVSISFAIFEKQMLIVDPTDEEESLSLGRLSVVMDSEE 230
Query: 256 QLVSLYKPGGAVLA---YTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
++ ++KPGG ++ ++ AV+ + + R + ++ AIS ++++
Sbjct: 231 EICYVHKPGGIPISQHLFSKAVE----IAKTRADLVRSLIHAAISTLKVE 276
>gi|59006476|emb|CAI46226.1| hypothetical protein [Homo sapiens]
Length = 248
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 149/284 (52%), Gaps = 42/284 (14%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
R G P E A V ++ ++D I +S +I ++
Sbjct: 64 A----------------------------FRSGPPGEEAQVASQFIADVIENSQIIQKED 95
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK W++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 96 LCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 143
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +T+V+D +
Sbjct: 144 EETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGK 203
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E I M+
Sbjct: 204 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 246
>gi|321458150|gb|EFX69223.1| hypothetical protein DAPPUDRAFT_301019 [Daphnia pulex]
Length = 276
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 159/280 (56%), Gaps = 17/280 (6%)
Query: 20 RRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKME 79
+ L PL +++ L RPD R L R T++ G++ +ADGSA+ K G+TT++ IK E
Sbjct: 6 KTLQPLEFYKTFLDRKSRPDGRKLLEFRKMTLNAGSIGTADGSAIVKCGNTTVICGIKAE 65
Query: 80 VMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELS 139
+ P E P +G + + +P +CS ++ G P E A + +++ ++++ +++L+ L
Sbjct: 66 LAAPEREEPSKGFIIPNVTLPSLCSSQIKSGPPGETAQAATQFIAELVNNNIIMDLETLC 125
Query: 140 LVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD--GKIVMLPEEQK 197
+ K AW+++ D+ C++ DG+L DA +++ VAA NL++P VS D+ K++ P+E+
Sbjct: 126 IKVSKWAWVLHCDLLCINLDGSLLDACVMALVAALKNLKLPIVSYDEEMDKLISNPDEKM 185
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
++ K+PV FSL +++DPT EEE + L ++ ++ ++ +
Sbjct: 186 GFDTIKQPVTS----------TFSL---FDNGILISDPTFEEEQLAAGLTSITMEGTS-V 231
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
+YKPGG L V+ I + + KE+ +++EEA S
Sbjct: 232 THMYKPGGCTLD-EKQVKKLIQQSELKTKEVARLIEEACS 270
>gi|281206474|gb|EFA80660.1| hypothetical protein PPL_06243 [Polysphondylium pallidum PN500]
Length = 278
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 163/291 (56%), Gaps = 27/291 (9%)
Query: 16 VDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAA 75
++AF+++ PL ++ + L S+RPD RSL R RNTT+S G++ +ADGS+ KIG+T+++
Sbjct: 1 MEAFQKIHPLEFYRKFLERSVRPDGRSLQRIRNTTVSAGSILTADGSSFVKIGNTSVICG 60
Query: 76 IKMEVMTPSL-ESPDEGCVS---IDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSG 131
++ E+ ++ C S ++ M PICS + +P+E A + QL+ +
Sbjct: 61 VRAEIAEKQQDQTTSNTCKSQIIVNIEMGPICSNIFSSTKPSEKAMSLCTQLNQLVQLLD 120
Query: 132 MINLKELSL-VGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPT-VSLDDGKI 189
I+ K+L V GK W +Y+D+YCLD +G + DAA+++ ++A N+++P V DDG
Sbjct: 121 -IDPKQLYFDVDGKYLWYLYVDLYCLDYNGNILDAAIIAMLSALKNVKLPKGVVSDDG-- 177
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGG--IPFSLTCILHKNYILADPTSEEESIMETLV 247
E KEE++ R L + IP S I Y+L+DP+ EEE + +
Sbjct: 178 ---SEVYKEEDT--------MRTLIINSYLIPLSFAVI--DEYVLSDPSLEEEKLSNGSI 224
Query: 248 TVVLDSSNQL-VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
++V + +L + LY G +Q C+ T+QR +E+ +++++I+
Sbjct: 225 SIVYNEKRELCLQLY--SGITPLDEKTLQQCLDQTKQRTQEIKDLIDQSIN 273
>gi|340709348|ref|XP_003393272.1| PREDICTED: exosome complex component RRP43-like [Bombus terrestris]
Length = 278
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 163/287 (56%), Gaps = 23/287 (8%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
++ + P++Y + HLA+ IRPD R R ++++ ++ AD SA+ KIG+TT++ IK
Sbjct: 5 YKIIHPVKYLQDHLAQDIRPDGRQFLSFRPISVNISSITHADSSAIFKIGNTTVVCGIKA 64
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ P ESP+ G + + +PP+CSP RPG P++ A V+ K + + + +S I+LK+L
Sbjct: 65 ELAAPKAESPECGYIVPNIELPPLCSPKFRPGPPSDQAQVITKLIENILRNSAAIDLKDL 124
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+ GK W++Y D+ C++ DG++ DA + + A S + LPE
Sbjct: 125 CVYKGKLVWVLYCDLVCINYDGSIIDACIGALTATLST-------------LTLPETLYN 171
Query: 199 ENSEKEPVNKEKR-KLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
+ + VN KR + + +P S+T I + ++ADPT +EES+ +T+V++ +
Sbjct: 172 VETGRVSVNSTKRIRFLVKALPVSITFAIFNDQLLVADPTDDEESLCLGRLTIVMN-EEK 230
Query: 257 LVSLYKPGGAVLA---YTSAVQDCIALTRQRVKELHQILEEAISGME 300
+ ++KPGG ++ ++ ++ C ++R + + +++ AIS ++
Sbjct: 231 ICCIHKPGGIPISQDLFSKSLSKC----KKRAELIRSLIDAAISTIK 273
>gi|350425266|ref|XP_003494065.1| PREDICTED: exosome complex component RRP43-like [Bombus impatiens]
Length = 278
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 163/287 (56%), Gaps = 23/287 (8%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
++ + P++Y + HLA+ IRPD R R ++++ ++ AD SA+ KIG+TT++ IK
Sbjct: 5 YKIIHPVKYLQDHLAQDIRPDGRQFLSFRPISVNISSITHADSSAIFKIGNTTVVCGIKA 64
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ P ESP+ G + + +PP+CSP RPG P++ A V+ K + + + +S I+LK+L
Sbjct: 65 ELAAPKAESPECGYIVPNIELPPLCSPKFRPGPPSDQAQVITKLVENILRNSAAIDLKDL 124
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+ GK W++Y D+ C++ DG++ DA + + A S + LPE
Sbjct: 125 CVYKGKLVWVLYCDLVCINYDGSIIDACIGALTATLST-------------LTLPETLYN 171
Query: 199 ENSEKEPVNKEKR-KLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
+ + VN KR + + +P S+T I + ++ADPT +EES+ +T+V++ +
Sbjct: 172 VETGRVSVNSTKRIRFLVKALPVSITFAIFNDQLLVADPTDDEESLCLGRLTIVMN-EEK 230
Query: 257 LVSLYKPGGAVLA---YTSAVQDCIALTRQRVKELHQILEEAISGME 300
+ ++KPGG ++ ++ ++ C ++R + + +++ AIS ++
Sbjct: 231 ICCIHKPGGIPISQDLFSKSLSKC----KKRAELIRSLIDAAISTIK 273
>gi|269115421|gb|ACZ26287.1| putative exosome complex exonuclease [Mayetiola destructor]
Length = 273
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 147/277 (53%), Gaps = 14/277 (5%)
Query: 17 DAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAI 76
+ ++ + P++Y+ ++A +IRPD R R I++ ++ SADGSA+ K+G+TT++ I
Sbjct: 3 EQYKIIHPIKYYRNYIAHNIRPDGREFDIFRPIRINIKSIGSADGSAIVKLGNTTVICGI 62
Query: 77 KMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLK 136
K E+ P++E P G + + + P+CSP R + A V+ L+D I S I+LK
Sbjct: 63 KAELTAPNVEEPQNGYLIPNIDLTPLCSPKYRSAASTDDAQVLTCHLNDIIRDSKWIDLK 122
Query: 137 ELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQ 196
+L + K W++Y DI C+D DG++ DA++++ AA +L +P V D +
Sbjct: 123 QLCIAKEKLVWILYCDITCIDYDGSILDASVVALCAALRSLMLPKVQYD-----IETNNY 177
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLTC-ILHKNYILADPTSEEESIMETLVTVVLDSSN 255
+E+ P+ + P S TC + + I ADP +EEE + TL+T+
Sbjct: 178 TVHQTERSPLELSE------NCPVSTTCMVFDEKSIFADPDAEEEELANTLITIA-SCDG 230
Query: 256 QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
+L + K GG +A +C+ L R K + +++
Sbjct: 231 ELCLVNKAGGQSIA-GQQFDECLKLALNREKSICKLI 266
>gi|332023404|gb|EGI63647.1| Exosome complex exonuclease RRP43 [Acromyrmex echinatior]
Length = 278
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 154/285 (54%), Gaps = 16/285 (5%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
FR + P++Y + HL +++R D R R ++++ ++ AD SA+ K+G TT + IK
Sbjct: 1 FRTIHPVKYLQDHLEQNVRTDGRKFLSFRPVSVNVSSIVQADSSAIFKLGDTTAVCGIKA 60
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ P ++PD G + + + P+CS RPG P+E A V++K + +S+S ++LK+L
Sbjct: 61 ELAAPKADTPDHGYIVPNVELSPLCSSKFRPGPPSEQAQVLSKFIDIILSNSAALDLKDL 120
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+ K W++Y DI CL+ +G++ DA + +AA K + LPE
Sbjct: 121 CICKSKLVWVLYCDILCLNYNGSVIDACTGALMAAL-------------KTLTLPEVNYT 167
Query: 199 ENSEKEPVN-KEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
+ + VN K ++K + +P S + + K ++ADPT +EE + ++V+D +
Sbjct: 168 KETALTIVNPKNRKKFIVRTLPISTSFAVFEKRLLVADPTDDEEDLSSGKFSIVMDDEEK 227
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEI 301
+ ++KPGG ++ + + + + + R K + ++ AIS + +
Sbjct: 228 ICYVHKPGGIPIS-QNLLSKGLEMAKTRAKLVRSVINAAISTLNV 271
>gi|358058357|dbj|GAA95876.1| hypothetical protein E5Q_02533 [Mixia osmundae IAM 14324]
Length = 280
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 146/282 (51%), Gaps = 22/282 (7%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
++RL+P Y ER L E IRPD R+ R + G+V +ADGS+L ++G TTM+ +++
Sbjct: 14 YKRLYPRAYLERFLHEGIRPDGRAFDECRPCSSDTGSVTTADGSSLVRVGQTTMMCTVRV 73
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E P L PDEG + I+ + PI S G P++ A V+A +L ISSS M+ L++L
Sbjct: 74 ETAEPDLMRPDEGFLIINAELMPIASSQFLSGPPSDDAQVLASRLRQVISSSNMLPLRKL 133
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL--DDGKIVMLPEEQ 196
+ KA +VY+D+ CL DG D A+++ A + +IP ++ ++ +++
Sbjct: 134 GIRRAKAVLVVYVDVACLSFDGNALDVAVMAVTQALYSARIPVITFEEENNRVIASASLP 193
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLTC--ILHKNYILADPTSEEESIMETLVTVVLDSS 254
+E EPV LTC L +L+DPT E + +L TV L S
Sbjct: 194 REPLKLSEPV---------------LTCSFALFGQTVLSDPTDHESAQSRSLATVALSRS 238
Query: 255 NQLVSLYKPGGAVLAY---TSAVQDCIALTRQRVKELHQILE 293
+ + + G VL + +Q+CI T++ + L Q ++
Sbjct: 239 GMIRYVLQSGHGVLQADRPHAFLQECIGRTKKHLASLWQTID 280
>gi|409079432|gb|EKM79793.1| hypothetical protein AGABI1DRAFT_38968 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 352
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/363 (27%), Positives = 178/363 (49%), Gaps = 79/363 (21%)
Query: 1 MGLPNASEDLSSE-MEVDAFRRLFPLRYFERHLAESIRPDARSLSRA-----------RN 48
M A+ D SS+ ++ F+RL P Y ER L E++RPD R++ R+
Sbjct: 1 MATATAAADPSSDSLKAAIFQRLHPRVYLERFLTENVRPDGRAIGCVMDGMGVKGEIWRD 60
Query: 49 TTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVR 108
+I++G++ +ADGSAL ++G +T++ +K E+ P LE+PDEG + + +P +C P +
Sbjct: 61 VSINVGSINTADGSALVRMGGSTIVCGVKAEIAEPDLENPDEGFLVPNVDLPAMCHPKFK 120
Query: 109 PGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALL 168
PG P++ A V++++L +T++SS ++ K L + GK W +Y+D C++ DG +FDA L+
Sbjct: 121 PGPPSDEAQVLSERLFETLTSSNFMSPKSLVVHPGKFVWTLYVDATCINYDGNVFDATLI 180
Query: 169 SAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIP--------- 219
+ V+A N ++P + E+ + + L L G+P
Sbjct: 181 AMVSALLNTRLPKAVYN------------EDTGQTMCYRESTSPLALFGLPLPTSFGIFD 228
Query: 220 --------------FSLTCI------------LHKNYILADPTSEEESIMETLVTVVL-- 251
F L I ++++ +LADPT+ EE +++ +++V
Sbjct: 229 SYVIITPLLFLKTRFLLVQIYFLSYPNLRLNPIYRSQVLADPTAFEEPLLDGTISIVFGG 288
Query: 252 ---------DSSNQLVSLYKPG---------GAVLAYTSAVQDCIALTRQRVKELHQILE 293
D QL+S+ + G G+ L ++ CI ++R EL +I+
Sbjct: 289 ADQNNSTPSDDDGQLLSVTQQGLGIVNDLNSGSGLGDKGVLEACIKAGKKRRVELAKIVR 348
Query: 294 EAI 296
EAI
Sbjct: 349 EAI 351
>gi|19113177|ref|NP_596385.1| exosome subunit Rrp43 (predicted) [Schizosaccharomyces pombe 972h-]
gi|1723274|sp|Q10205.1|RRP43_SCHPO RecName: Full=Exosome complex component rrp43; AltName:
Full=Ribosomal RNA-processing protein 43
gi|3451295|emb|CAA20427.1| exosome subunit Rrp43 (predicted) [Schizosaccharomyces pombe]
Length = 270
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 142/268 (52%), Gaps = 17/268 (6%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
F+++ P +Y L + +R D RS+S R I+ +++A+GSA+ + G + IK
Sbjct: 17 FKKITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKA 76
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ P SP+EG + + + P+CS +PG P++ A VV+++L T+ S +INL+ L
Sbjct: 77 EIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSL 136
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDG--KIVMLPEEQ 196
+ KAAW++Y DI CL+ DG+ FD A + AA +++PT D+ +++
Sbjct: 137 CIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPTAVWDEDLERVIC----- 191
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
+ R + L S + + + +LADPT EEE + +T++L+SS
Sbjct: 192 ---------ASTLTRPVQLSTEVRSFSWSVFDDKLLADPTDEEEDLSTEFLTIMLNSSKN 242
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQR 284
+V + K GG + ++ CI + R +
Sbjct: 243 IVKIIKLGGTHIQ-PLLLKKCIEVARSK 269
>gi|307594959|ref|YP_003901276.1| 3' exoribonuclease [Vulcanisaeta distributa DSM 14429]
gi|307550160|gb|ADN50225.1| 3' exoribonuclease [Vulcanisaeta distributa DSM 14429]
Length = 283
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 151/275 (54%), Gaps = 13/275 (4%)
Query: 28 FERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLES 87
++ + + +R D R L+ R +I + V +ADGS+L +G+T ++A +K+EV P ++
Sbjct: 19 MKKMIEQGVRIDNRGLNDYRELSIRVNVVKTADGSSLVSLGNTKVMAGVKVEVGKPFEDT 78
Query: 88 PDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAW 147
PDEG + ++ + P SP + PG P E A +A+ + I SG ++ K LS+V GK AW
Sbjct: 79 PDEGALIVNLEIAPTASPDIEPGPPDENAIEIARVVDRAIRHSGFLDFKSLSIVTGKHAW 138
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVN 207
+++DIY L+ DG L DA+ ++AVAA N +P V LD ++ K + S + P+
Sbjct: 139 FLWVDIYVLNHDGNLVDASTIAAVAALMNTALPKVELDPAGNIL-----KIDRSARSPL- 192
Query: 208 KEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAV 267
+L +P ++T + N++L DPT EEE + + + + N +V++ K GA
Sbjct: 193 ----RLNTDKLPLTITYVKIGNFLLVDPTREEEDLSDGVYITGIAGGN-VVAIQKVTGAF 247
Query: 268 LAYTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
+ + I+ + + +L ++ A++ + D
Sbjct: 248 --TKDEINNIISNSVNQYVKLRNLIMNAMANPQTD 280
>gi|325969193|ref|YP_004245385.1| 3' exoribonuclease [Vulcanisaeta moutnovskia 768-28]
gi|323708396|gb|ADY01883.1| 3' exoribonuclease [Vulcanisaeta moutnovskia 768-28]
Length = 283
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 135/240 (56%), Gaps = 13/240 (5%)
Query: 28 FERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLES 87
+ + + +R D R L+ R +I +G V +ADGS+L +G+T ++A +K+EV P ++
Sbjct: 19 MRKMIEQGVRIDNRGLNDYRELSIRVGVVRTADGSSLVSLGNTKVMAGVKVEVGKPFEDT 78
Query: 88 PDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAW 147
PDEG + ++ + P SP + PG P E A +A+ + I SG +N K LS+V G+ AW
Sbjct: 79 PDEGALIVNLEIAPAASPDIEPGPPDENAIEIARVVDRAIRHSGFLNFKSLSIVTGRHAW 138
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD-GKIVMLPEEQKEENSEKEPV 206
+++DIY L+ DG L DA+ ++A+ A N +P V LD G I+ + + S K P+
Sbjct: 139 FLWVDIYVLNHDGNLVDASTIAAITALMNTALPKVELDPAGNILRI------DRSNKSPL 192
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
L + +P ++T N++L DPT EEE + + + + N +V++ K GA
Sbjct: 193 -----ALNVDKLPLTITHAKLGNFLLVDPTREEEDLSDGIYITGIAGGN-VVAIQKVTGA 246
>gi|213408869|ref|XP_002175205.1| exosome complex exonuclease RRP43 [Schizosaccharomyces japonicus
yFS275]
gi|212003252|gb|EEB08912.1| exosome complex exonuclease RRP43 [Schizosaccharomyces japonicus
yFS275]
Length = 274
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 143/272 (52%), Gaps = 15/272 (5%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
++ + P +Y + L +RPD R++S R ++ +++ADGS + + G + + IK
Sbjct: 14 YKSIAPGQYLQHFLDNQVRPDGRTVSEFRPRVVNTQCISTADGSCIVRAGESVFVCGIKA 73
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ P LE+P G + + M P+C+ +PG P E A VV++Q++ + + ++ L+ L
Sbjct: 74 EIAEPELEAPSRGWIVPNVEMGPLCNGKFKPGPPRELAQVVSEQMNQVLEQTCLVPLESL 133
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDG--KIVMLPEEQ 196
+ KAAW +Y DI CL+ DG FD A + + A ++P V D+ ++V + +E
Sbjct: 134 CIREKKAAWCLYADIVCLNYDGNAFDCAWKALMHALETTRLPAVVWDEDEERVVCVHDE- 192
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
+ K L L S + + N +LADPT +EES+ +T++LD++ +
Sbjct: 193 -----------RAKHPLALSSHIESFSWTVFGNCVLADPTDDEESLCVERLTIMLDNAGR 241
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKEL 288
+ L K GG + ++ C+ + ++ V L
Sbjct: 242 ICKLVKMGGTHIQ-KGLLKGCLQIAKEHVLSL 272
>gi|401881827|gb|EJT46109.1| hypothetical protein A1Q1_05320 [Trichosporon asahii var. asahii
CBS 2479]
gi|406701090|gb|EKD04244.1| hypothetical protein A1Q2_01463 [Trichosporon asahii var. asahii
CBS 8904]
Length = 312
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 165/314 (52%), Gaps = 42/314 (13%)
Query: 7 SEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAK 66
S S + F+RL P +Y +R LA+ RPD R +S R+ +I++ A+GSAL +
Sbjct: 15 STSTSPATQAAVFKRLHPDQYLQRFLAQGYRPDGRKVSAWRDVSINV-----AEGSALVR 69
Query: 67 IGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDT 126
+G TT++ IK E+ PS +PDEG V + +P + SP +PG P + A ++ L+D
Sbjct: 70 MGDTTIVCGIKAEIAEPSGAAPDEGFVVPNIDLPALSSPKFKPGPPVDEAQTMSNWLNDM 129
Query: 127 ISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD 186
+ SS + K L + GKAAW++Y+D+ C++ DG +DAA+L+ +AA N ++P+ D+
Sbjct: 130 LVSSRTLPPKSLIIAPGKAAWVIYIDVVCINYDGNAYDAAVLAVMAALRNTRLPSAKYDE 189
Query: 187 GKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPF--------SLTCILH----------- 227
Q N + +K L LG +P S +L
Sbjct: 190 TTF------QTVCNWD------DKHPLPLGRMPLCASFGVFESAGTVLDSSSHPAAKILV 237
Query: 228 ---KNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG-GAVLAYTSA--VQDCIALT 281
+ Y+L DPT+ E+ ++ T +T+ LD +N+ ++ + G G V+ + + + + +
Sbjct: 238 ADSRTYLLPDPTAFEQPLLPTTITIALDENNRAATVRQEGLGGVVGKSGSELLDEAWSAA 297
Query: 282 RQRVKELHQILEEA 295
++EL QILE++
Sbjct: 298 EGHIQELRQILEQS 311
>gi|159040755|ref|YP_001540007.1| exosome complex RNA-binding protein Rrp42 [Caldivirga
maquilingensis IC-167]
gi|157919590|gb|ABW01017.1| 3' exoribonuclease [Caldivirga maquilingensis IC-167]
Length = 279
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 134/238 (56%), Gaps = 13/238 (5%)
Query: 28 FERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLES 87
R ++E RPD R L R+ TI +G + +ADGSAL +G+T ++A IK E+ P ++
Sbjct: 17 LRRLISEGKRPDDRQLISMRDLTIRVGVIKTADGSALVNLGNTKVIAGIKFELGKPFEDT 76
Query: 88 PDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAW 147
P+EG + ++ PP+ +P PG P E A +A+ + + S I L++L ++ GK+ +
Sbjct: 77 PNEGNLIVNLETPPLAAPTFEPGPPDENAIEIARIIDRALRHSNYIPLRDLVIIPGKSVY 136
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVN 207
+++DIY L+ DG L D+++L+AV+A +N Q+P +D E K + S K P+N
Sbjct: 137 SMWVDIYVLNHDGNLIDSSMLAAVSAIANAQVPRAIIDG-------ENVKLDKSTKIPLN 189
Query: 208 KEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
+ + P ++T Y++ DPT EEE + + TV D N +V+L K G
Sbjct: 190 INPQNM-----PLTVTYYKIDKYLIVDPTLEEEVMSDGRFTVASDGEN-IVALQKGEG 241
>gi|326435509|gb|EGD81079.1| hypothetical protein PTSG_11024 [Salpingoeca sp. ATCC 50818]
Length = 255
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 137/257 (53%), Gaps = 13/257 (5%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++ E+ + F++++P ++ R L ++RPD RS R I+ G + S+DGS L +G
Sbjct: 1 MADEIAAETFKKVYPREFYSRFLEHNVRPDGRSREDPRPCAIAPGTITSSDGSCLVTLGK 60
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T+++ IK+E P L++ + G + +PP+CS PG P A +++ ++D S
Sbjct: 61 TSVVCGIKLEFADPPLDNDNVGWIVPTVTLPPLCSDRFTPGPPPAEAQRLSEFITDIFCS 120
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL--DDG 187
M++ +L ++ GK +W +YLDI C++ DG + DA +L+A+AA ++ +P V L D
Sbjct: 121 DTMLDKHDLCIIPGKLSWALYLDIQCVNYDGNVVDACVLAAMAALQSVTLPKVELPSDLS 180
Query: 188 KIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLV 247
+ LP + + K T+ F++ + +L DP EEE + +
Sbjct: 181 DLEGLPSIDRSAG------HALNLKRTVTSCTFAVL-----DDVLTDPCLEEEDLCSASM 229
Query: 248 TVVLDSSNQLVSLYKPG 264
TVV+D + + S+ PG
Sbjct: 230 TVVVDDAGSICSMCSPG 246
>gi|242007204|ref|XP_002424432.1| Exosome complex exonuclease RRP43, putative [Pediculus humanus
corporis]
gi|212507832|gb|EEB11694.1| Exosome complex exonuclease RRP43, putative [Pediculus humanus
corporis]
Length = 276
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 157/279 (56%), Gaps = 17/279 (6%)
Query: 21 RLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEV 80
++ P + + LA+ +RPD R+L R +I++ + +ADGSA+ KIG+T ++ +K+E+
Sbjct: 7 KIDPAGFLNKVLAQGVRPDGRALDECRPISINVNSFHNADGSAIVKIGNTAVVCGVKLEL 66
Query: 81 MTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSL 140
P E+PD+G + + +PP+CS +PG P + A K +++ + S I+LK L +
Sbjct: 67 AKPKAETPDQGYLIPNVDLPPLCSGQYQPGPPCDYAQEATKFVNEILLESQCIDLKALCI 126
Query: 141 VGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEEN 200
V + AW++YLDI CL+ DG L DAAL + +AA K+ LPE
Sbjct: 127 VPDRLAWVIYLDIICLNQDGNLLDAALAAGIAAL-------------KVTTLPEVIYNVE 173
Query: 201 SEKEPVNKEKR-KLTLGGIPFSLTCILHK-NYILADPTSEEESIMETLVTVVLDS-SNQL 257
S ++ VN KR +L + +P S T + K + +L DPT EEES +++V+++ S +
Sbjct: 174 SGEKVVNPLKRQQLNVKKLPLSTTIAVFKSDCLLIDPTVEEESFSSGTISIVIEADSGDI 233
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+++PG L S + CI + + K + ++++ AI
Sbjct: 234 CGIHQPGTEPLK-PSEIDFCITQAQVKTKAVAELIKTAI 271
>gi|330797129|ref|XP_003286615.1| hypothetical protein DICPUDRAFT_31155 [Dictyostelium purpureum]
gi|325083440|gb|EGC36893.1| hypothetical protein DICPUDRAFT_31155 [Dictyostelium purpureum]
Length = 276
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 153/286 (53%), Gaps = 22/286 (7%)
Query: 16 VDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAA 75
++AF+++ PL ++ + L S+RPD RSL+ R TTIS G+V +ADGS+ KIG+T+++
Sbjct: 1 MEAFQKIHPLEFYRKFLIRSVRPDGRSLNDTRKTTISTGSVTTADGSSFVKIGNTSVVCG 60
Query: 76 IKMEV---------MTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDT 126
++ EV S+ + + + I+ + PICS +P++ A + +L+
Sbjct: 61 VRAEVGEKPSTDKSKLQSINNHENSNIFINIELGPICSNTFSSTKPSDMAMTLCSRLNSL 120
Query: 127 ISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD 186
I+ + + GKA W +Y+DIYCLD DG ++DAA+LS ++A N+++P +++
Sbjct: 121 INRLEIPDTDFYFDEEGKALWYLYVDIYCLDYDGNIYDAAVLSILSALKNVKLPKGIIEN 180
Query: 187 GKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETL 246
EQ P+ + K L IP S + I ++YIL+DP+ EEE +
Sbjct: 181 NDEYYKDLEQ--------PLRELNIKHYL--IPTSFSVI--EDYILSDPSLEEEKLSTGT 228
Query: 247 VTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
+ + + ++ L G ++ S +++C+ + R + + ++
Sbjct: 229 INITYNEHKEICLLLVTGINSIS-ESNLKECMKKAKDRCQYIINLI 273
>gi|156937004|ref|YP_001434800.1| exosome complex RNA-binding protein Rrp42 [Ignicoccus hospitalis
KIN4/I]
gi|156565988|gb|ABU81393.1| ribosomal RNA-processing protein RRP42 [Ignicoccus hospitalis
KIN4/I]
Length = 276
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 140/262 (53%), Gaps = 16/262 (6%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L + R I++G A GSAL +IG+T +LA +K+EV P + PD G ++++
Sbjct: 28 RIDKRRLDQYRPIKITLGVGGKAHGSALVEIGNTKVLAGVKVEVGKPFKDVPDAGVLNVN 87
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ S PG P E A +A+ + + G+I+LKEL L+ G+ +V+LD+Y L
Sbjct: 88 AELLPLASSEFEPGPPDENAIELARVIDRALREPGVIDLKELVLIPGEKVLVVWLDVYVL 147
Query: 157 DADGALFDAALLSAVAAFSNLQIP-TVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTL 215
D DG LFDA++L+++AA + + P V +DG + E E N KR L +
Sbjct: 148 DHDGNLFDASMLASMAALLDTRYPEYVVREDGSV-----EVDEAN---------KRPLPI 193
Query: 216 GGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQ 275
S+T + +N + DPT EEE + + + D +LV L K G A L +
Sbjct: 194 ANKVVSVTLNVLENLFMVDPTLEEEVVADGKIVFAFDERGRLVGLQKSGPAWLDLDKSTT 253
Query: 276 DCIALTRQRVKELHQILEEAIS 297
L + KEL ++LE++++
Sbjct: 254 -AFNLAYSKYKELLEVLEKSLA 274
>gi|328871066|gb|EGG19437.1| hypothetical protein DFA_00014 [Dictyostelium fasciculatum]
Length = 294
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 156/292 (53%), Gaps = 19/292 (6%)
Query: 16 VDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAA 75
++AF+++ PL ++++ L S+RPD R L R IS G++ + DGS+ KIG+T+++A
Sbjct: 1 MEAFQKVHPLEFYKKFLERSVRPDGRGLDCFRKINISTGSIMTTDGSSFVKIGNTSVIAG 60
Query: 76 IKMEV-MTPSLESPDEGC--------VSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDT 126
+K EV +TP+ + ++ M PICS + +P+E A + QL+
Sbjct: 61 VKAEVALTPTQSDNSISSNNNNNNNKMFVNVEMGPICSNIFSSSKPSEKAMSLCSQLNSL 120
Query: 127 ISSSGMINLKELSLVG-GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD 185
++ IN KEL GK +W +Y+D+YCLD +G L DA +L+ ++A N+++P +
Sbjct: 121 VNRLE-INDKELYFDDQGKYSWYLYIDLYCLDYNGNLMDACVLAIMSALKNVKLPKGIVV 179
Query: 186 DGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMET 245
+ P+ K+ ++P+ R L +G T +L +Y+L DP+ EEE +
Sbjct: 180 ESSASEAPQLFKD---TEQPM----RSLNIGTYLIPQTFVLLNDYLLTDPSLEEEKLSSG 232
Query: 246 LVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
+++ + ++ +L G ++ ++ C+ T++R E+ +++ +
Sbjct: 233 TISITFNDRFEICTLLYTGITSIS-EKILEQCLEKTKKRSTEIINLIDNCCT 283
>gi|156553642|ref|XP_001600402.1| PREDICTED: exosome complex component RRP43-like [Nasonia
vitripennis]
Length = 277
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 148/283 (52%), Gaps = 15/283 (5%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
F+ + P +Y H A + RPD R R ++++G++ AD SA+ KIG+T+++ IK
Sbjct: 5 FKTIHPAKYLRDHFASNTRPDGREFISFRPVSVNIGSITQADSSAVFKIGNTSVVCGIKA 64
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ +P E+PD G + + + P+ S RPG P E K + + +S ++LK+L
Sbjct: 65 ELASPKAETPDCGFIIPNVDLSPLSSSKFRPGPPGEETQCATKLVERILVNSEAVDLKDL 124
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+ K W++Y D+ C+D DG++ DA + + VAAF L +P V E
Sbjct: 125 CIHKDKLVWVLYCDLICIDYDGSVIDACIGALVAAFKILTLPVV------------EYTI 172
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYIL-ADPTSEEESIMETLVTVVLDSSNQL 257
E + +K + + L +P S T + N +L DPT +EE + + +T+V + + +
Sbjct: 173 ETGATKVDDKNRISVPLRQLPASTTFAIFDNQLLITDPTEDEEKLALSTLTIVFNEKS-M 231
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
++K GG ++ + C++ + R +++ +++ A S ++
Sbjct: 232 CMVHKSGGIPMS-QKLLSKCVSKAKSRGEQVRKLILTAASTVK 273
>gi|357627282|gb|EHJ77019.1| hypothetical protein KGM_00061 [Danaus plexippus]
Length = 839
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 141/274 (51%), Gaps = 48/274 (17%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
FR + P ++F +++ IRPD R + RN +++ A+ +AD SA+ K G+TT++ IK+
Sbjct: 31 FRLIHPGKFFNDYISRDIRPDGRKFNDQRNIKLNVNAIKTADASAVVKCGNTTVVCGIKL 90
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ P E PD G + + + P+CS RPG P++ A VV+ +SD +++S I++K+L
Sbjct: 91 ELAKPKAEEPDVGFLITNVELLPLCSSKFRPGPPSDHAQVVSNVVSDIVTNSKCIDMKDL 150
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+V K +W++Y D+ CLD DG++ DA L++ +++ + Q
Sbjct: 151 CIVPDKLSWVLYCDMVCLDYDGSVVDACLITLMSSLKSHQD------------------- 191
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLTCIL----HKNYILADPTSEEESIMETLVTVVLDSS 254
+ TC +K+ L DPT+ EE + + ++
Sbjct: 192 ----------------------TFTCAWFTHCYKSVTLTDPTAYEEEMCGGVGANLIACW 229
Query: 255 N--QLVSLYKPGGAVLAYTSAVQDCIALTRQRVK 286
N QL ++K GG+ L+ T ++ +AL +Q+ K
Sbjct: 230 NKGQLCGVFKFGGSNLS-TENEKETLALAKQKSK 262
>gi|302348935|ref|YP_003816573.1| exosome complex exonuclease 2 [Acidilobus saccharovorans 345-15]
gi|302329347|gb|ADL19542.1| Probable exosome complex exonuclease 2 [Acidilobus saccharovorans
345-15]
Length = 280
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 141/265 (53%), Gaps = 18/265 (6%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
+ +R D R + RN +I +G + ADGSA K+G+T +L +K+EV P ++P+EG +
Sbjct: 25 KGVRSDQRDFATPRNLSIQVGVIDKADGSAWVKLGNTQVLVGVKLEVGIPYRDTPNEGVL 84
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDI 153
++ + P+ SP PG P E A +++ + ++ I+L L + G+ AW++++DI
Sbjct: 85 QVNSELTPVASPTFEPGPPDENAVELSRVIDRSLRDPKAIDLSSLVIRPGEKAWVLWIDI 144
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIPTV-SLDDGKIVMLPEEQKEENSEKEPVNKEKRK 212
Y LD DG FDA++L +AA N ++P + G+I++ N EK K R+
Sbjct: 145 YVLDYDGNYFDASMLGVMAALMNTKVPEYEETESGEIII--------NREKGTPLKLNRR 196
Query: 213 LTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT- 271
+ L +T + +YIL DP +EE + ++ + + D +V + K G YT
Sbjct: 197 VAL------VTSVKVGDYILIDPNIDEELLADSRMVIAFDEQGTIVGMQKSGMG--GYTR 248
Query: 272 SAVQDCIALTRQRVKELHQILEEAI 296
+ I ++R + ++L++A+
Sbjct: 249 DELLKVIDISRNASQVYFKLLDQAL 273
>gi|403171122|ref|XP_003330351.2| hypothetical protein PGTG_11688 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169041|gb|EFP85932.2| hypothetical protein PGTG_11688 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 281
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 131/252 (51%), Gaps = 9/252 (3%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
+++ EV+ +RL P ++ + LA +R D R+L ++R ++SA S + IG+
Sbjct: 1 MNNPFEVEQLKRLQPSQFIKTCLANKLRTDGRTLHQSRPIHSHSDVISSAHASTIVSIGN 60
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T++L AIK E P P++G + + + P+C P +PG P + A ++A +L D + S
Sbjct: 61 TSVLCAIKFETAQPESAKPNQGFLVPNVELGPMCCPKYKPGPPPDQAQILATKLKDILIS 120
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189
SG + L L + GK W+VY+DI CL DG LFDA+L + +A + +IP VS D
Sbjct: 121 SGFVPLDSLVIAPGKLVWVVYIDIVCLSNDGNLFDASLSATTSALKSARIPVVSFDHET- 179
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPT-SEEESIMETLVT 248
+ K N + ++ G F+L ++ IL DP EE+S ++
Sbjct: 180 ----QSLKLANPTHAECVPLAIRTSISGYTFAL---YDRSTILPDPCLFEEDSAAGSVTL 232
Query: 249 VVLDSSNQLVSL 260
VV D S LV L
Sbjct: 233 VVDDDSRNLVHL 244
>gi|20093818|ref|NP_613665.1| exosome complex RNA-binding protein Rrp42 [Methanopyrus kandleri
AV19]
gi|29336820|sp|Q8TYC2.1|ECX2_METKA RecName: Full=Probable exosome complex exonuclease 2
gi|19886741|gb|AAM01595.1| Predicted exosome subunit, predicted exoribonuclease related to
RNase PH [Methanopyrus kandleri AV19]
Length = 267
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 140/255 (54%), Gaps = 17/255 (6%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R R + G ++ A+GSAL ++G+T ++ +K+EV P +SP+EG ++++
Sbjct: 23 RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ P PG P E A +++ + I S MI+L+EL + G+ W+ ++DI+ L
Sbjct: 83 AELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTFVDIHVL 142
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG LFDA+++ +V+A S ++P + D ++ E EE++E L +
Sbjct: 143 DHDGNLFDASMIGSVSALSITEVPKAEVVDDEV-----EVMEEDTE---------PLAIN 188
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSA-VQ 275
P S+T Y+L DP EEE IM+T +TV + S ++ ++ K G + + ++
Sbjct: 189 DFPISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK--GELGDFPEHLLE 246
Query: 276 DCIALTRQRVKELHQ 290
D I L ++ +E+ +
Sbjct: 247 DAIDLATKKAEEVRR 261
>gi|145344856|ref|XP_001416940.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577166|gb|ABO95233.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 285
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 135/268 (50%), Gaps = 6/268 (2%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTML 73
ME A+ RL+P E+ LA R D R L RAR T + G + A GSALAK G+TT
Sbjct: 1 MESAAYARLYPREACEKTLASGARGDGRPLGRARARTCATGVASGALGSALAKHGATTAC 60
Query: 74 AAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMI 133
A + + TP P+EG + I P S R GR A + ++++ ++
Sbjct: 61 AGVTATIATPDATRPEEGFLEIAVDHAPQASEDARDGRTRGRREAAAAACASAVANAAVL 120
Query: 134 --NLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVM 191
+LK+L + G AW V +D+ L DG D A+ + +AA + +P V++ GK+ +
Sbjct: 121 GKDLKQLCVERGTFAWRVRVDVIVLCDDGGAADCAVTAVMAALRDCVLPEVAVTRGKVAL 180
Query: 192 LPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVL 251
E + V K R L + +P LT L++ ++L DPT EEE++ E V+VVL
Sbjct: 181 ---EGDGTAMNGDGVRKGTR-LDVQTMPVCLTTALYREHLLVDPTREEEALSECEVSVVL 236
Query: 252 DSSNQLVSLYKPGGAVLAYTSAVQDCIA 279
L ++KPGG V A + CIA
Sbjct: 237 TEDGLLRGVFKPGGEVEATEDTLMKCIA 264
>gi|430813254|emb|CCJ29382.1| unnamed protein product [Pneumocystis jirovecii]
Length = 280
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 147/282 (52%), Gaps = 17/282 (6%)
Query: 17 DAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAI 76
+ ++++ +YF LA S+RPD R+ + R+T+++ G++++ GS++A++G T I
Sbjct: 12 EVYKKIDLRQYFRHFLASSLRPDGRTPLQFRSTSMNTGSLSNTYGSSVARMGDTIFTCGI 71
Query: 77 KMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLK 136
+ E+ PS+E P EG + PICS + A + +++ + +S ++ L
Sbjct: 72 QAEITKPSIERPLEGWIVPHITFSPICSQKYKSNHHNHIAQAMLQRILSLMHTSNILPLS 131
Query: 137 ELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQ 196
L + KAAW++Y+D+ CL+ DG D A ++ ++A ++P +
Sbjct: 132 SLLISEYKAAWVLYVDLICLNYDGNAMDVAWIALISALETTKLPLAIWN----------- 180
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLTCILH---KNYILADPTSEEESIMETLVTVVLDS 253
E++E KE + L L FS + + YIL+D +EES++ + +++ +
Sbjct: 181 --EDTESVICKKEYKNLKLNQRLFSASFGIFDGSSKYILSDLNDDEESLISETINIIIGN 238
Query: 254 SNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEA 295
QL+S+ K GG + + CI L ++R EL+ +++++
Sbjct: 239 DKQLLSINKNGGITMT-QEMIISCIKLAKERYDELYNLIDKS 279
>gi|288930698|ref|YP_003434758.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642]
gi|288892946|gb|ADC64483.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642]
Length = 259
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 135/268 (50%), Gaps = 22/268 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D R R I G + A+GSAL K+G+T +L +KM+ P +
Sbjct: 13 YVLSKIRDGERIDGRKFDEIRKIEIQTGVIEKAEGSALVKLGNTQVLVGVKMQPGEPFPD 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+P++G + + + P+ SP PG P E A +A+ + I S ++L++L + G+
Sbjct: 73 APNKGIIITNAELVPLASPTFEPGPPDENAIELARVVDRGIRESEAVDLEKLCIEEGEKV 132
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W++++DI+ LD DG L DA+ L A+AA N +P + G LP
Sbjct: 133 WLIFIDIWALDDDGNLLDASALGAIAALLNTTVPAERFEVGDDFPLP------------- 179
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
+ +P ++T ++ +N IL DP +E S+ + +T+ DS + +V++ K G
Sbjct: 180 --------VRDLPVAITSLIVENKILVDPIKDETSVAKNFLTITTDSEDNIVAIQKSGSY 231
Query: 267 VLAYTSAVQDCIALTRQRVKELHQILEE 294
+L + I L+ ++ +E+ ++L E
Sbjct: 232 LLP-EEKFYEAIELSIRKAREVRKLLAE 258
>gi|332374620|gb|AEE62451.1| unknown [Dendroctonus ponderosae]
Length = 174
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
++ L PL+Y+ + A IRPD R R +++G++++ADGSA+AK+G TT++ +K
Sbjct: 5 YKSLHPLKYYRDYYAHDIRPDGREFEDYRPVIVNVGSISTADGSAIAKVGKTTVICGVKA 64
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ P E P++G + + + P+CS + G P E A V+ + ++D I +S INL+EL
Sbjct: 65 ELCRPRPECPNKGFLVPNLELSPLCSSKFKSGPPGEEAQVLTQLIADVIENSRCINLEEL 124
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPT 181
L+ K AW +Y D+ CLD DG+L DA +++ +A L PT
Sbjct: 125 CLLKDKLAWCLYADLVCLDYDGSLLDACIVALMACL-RLLCPT 166
>gi|315427142|dbj|BAJ48757.1| exosome complex component RRP42 [Candidatus Caldiarchaeum
subterraneum]
gi|315427161|dbj|BAJ48775.1| exosome complex component RRP42 [Candidatus Caldiarchaeum
subterraneum]
gi|343485776|dbj|BAJ51430.1| exosome complex component RRP42 [Candidatus Caldiarchaeum
subterraneum]
Length = 271
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 123/230 (53%), Gaps = 16/230 (6%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R + R I+ V A GSAL +G T +L IK+EV TP + P+EG +++
Sbjct: 24 RIDEREPLQYRKIEIATNVVEKAHGSALVSLGKTKILTGIKVEVGTPYPDRPNEGVFTVN 83
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ S PG P E A +++ + I S I +++L +V G+ +M+++D Y L
Sbjct: 84 AELLPLASKTFEPGPPDERAIELSRIVDRVIRESKAIEVEKLCIVEGQKVYMIFIDCYVL 143
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG FDA++LSAVAA + +P + DG++ E V EK KL +
Sbjct: 144 DYDGNYFDASVLSAVAALRTMTLPVYRVVDGRV--------------EAVPGEKMKLPMR 189
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK--PG 264
+P S+T L ++ I+ DP EE + +T+VT+ DS L ++ K PG
Sbjct: 190 TLPVSVTMALIRDKIIVDPLPAEEDVADTVVTIGYDSDGVLSAIQKSSPG 239
>gi|170290982|ref|YP_001737798.1| exosome complex RNA-binding protein Rrp42 [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175062|gb|ACB08115.1| 3' exoribonuclease [Candidatus Korarchaeum cryptofilum OPF8]
Length = 268
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 136/270 (50%), Gaps = 16/270 (5%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D R L R + G A+G A K+G T +L +K ++ P +
Sbjct: 15 YIRDLVEKGQRVDGRGLHEYRPIEVLNGTFTKAEGEAWLKLGETQVLVGVKADLGEPFPD 74
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+PD+G + + P+ SP PG P E A +A+ + I S+ I+L L ++ GK
Sbjct: 75 TPDKGVFVSNAELLPVASPTFEPGPPDEGAIELARVVDRAIRSADAIDLGSLVILPGKLV 134
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
+M++LD+Y LD DG L D+ L+++ A +IP V L +EN E E V
Sbjct: 135 YMIFLDMYVLDYDGNLEDSLTLASLIALGRSEIPEVEL-------------KENGEIE-V 180
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
+ KRKL L IP + + + + IL DPT EEES+ + +TV ++ ++ S+ K G
Sbjct: 181 KESKRKLELKDIPINFSFVKIGSKILLDPTLEEESVSDASITVAINKDGKVCSVQKRHGT 240
Query: 267 VLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+ + + + R + EL +I+ EAI
Sbjct: 241 F--TVEEILNIVNVARSKWPELARIVREAI 268
>gi|346473845|gb|AEO36767.1| hypothetical protein [Amblyomma maculatum]
Length = 223
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 135/233 (57%), Gaps = 15/233 (6%)
Query: 67 IGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDT 126
+G TT++ +K E+ P++ P +G + + + P+CSP+ +PG P E A V++K + D
Sbjct: 1 MGCTTVVCGVKAELAEPAVAMPKQGYIVPNVDLLPLCSPMFKPGPPGEQAQVLSKLMLDI 60
Query: 127 ISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD 186
++SS ++L++L + GK W + +D+ CLD DG + +A +L+A AA +L +P V D
Sbjct: 61 LTSSDSLDLEKLCIEEGKLVWSLNVDLTCLDYDGNVAEACILAATAALCSLTLPKVLTTD 120
Query: 187 GKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETL 246
G++ +L E +E+ K+T G + + +L + I+ DPT EEE +
Sbjct: 121 GEVNVLLE-------------REEAKVTEGPLAATFA-VLADDTIVVDPTHEEECLAAET 166
Query: 247 VTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
TV+L++ N++ ++KPGG+ L+ T + + L R+ +K+ +L A+S +
Sbjct: 167 FTVILNADNKICGVHKPGGSALS-TEQISGHVELARELIKDSRNLLSAAMSNV 218
>gi|346467463|gb|AEO33576.1| hypothetical protein [Amblyomma maculatum]
Length = 215
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 135/243 (55%), Gaps = 35/243 (14%)
Query: 31 HLAESIRP----DARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
HLA+ P D R L+ R T +++G++++ADGSAL K+G TT++ +K E+ P++
Sbjct: 3 HLAQRQGPYERSDGRQLNERRPTALNIGSISTADGSALVKMGCTTVVCGVKAELAEPAVA 62
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P +G G P E A V++K + D ++SS ++L++L + GK
Sbjct: 63 MPKQG---------------YXXGPPGEQAQVLSKLMLDILTSSDSLDLEKLCIEEGKLV 107
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W + +D+ CLD DG + +A +L+A AA +L +P V DG++ +L E
Sbjct: 108 WSLNVDLTCLDYDGNVAEACILAATAALCSLTLPKVLTTDGEVNVLLE------------ 155
Query: 207 NKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
+E+ K+T G P + T +L + I+ DPT EEE + TV+L++ N++ ++KPGG
Sbjct: 156 -REEAKVTEG--PLAATFAVLADDTIVVDPTHEEECLAAETFTVILNADNKICGVHKPGG 212
Query: 266 AVL 268
+ L
Sbjct: 213 SAL 215
>gi|66801297|ref|XP_629574.1| hypothetical protein DDB_G0292692 [Dictyostelium discoideum AX4]
gi|60462952|gb|EAL61149.1| hypothetical protein DDB_G0292692 [Dictyostelium discoideum AX4]
Length = 293
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 154/281 (54%), Gaps = 28/281 (9%)
Query: 16 VDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAA 75
++AF+++ PL ++ ++L S+RPD RSL R TTIS G++ +ADGS+ KIGST+++
Sbjct: 1 MEAFQKIHPLEFYRKYLVRSVRPDGRSLDDIRKTTISTGSITTADGSSFVKIGSTSVVCG 60
Query: 76 IKMEV-MTPSLESP--------DEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDT 126
++ EV PS++ + + I+ + PICS +P++ A + +L+
Sbjct: 61 VRAEVGEKPSIDKSKFSTLNVHENKNIFINIELGPICSNTFSSSKPSDIAMSLCSRLNSL 120
Query: 127 ISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD 186
I+ + GKA W +Y+D+YCLD DG ++DAA+LS ++A N+++P
Sbjct: 121 INRLEIPETDYYFDEEGKALWYLYVDVYCLDYDGNIYDAAVLSIISALKNVKLPK----- 175
Query: 187 GKIVMLPEEQKEENSE-KEPVNKEKRKLTLGG--IPFSLTCILHKNYILADPTSEEESIM 243
G I E N E + + +RKL + IP S + I +YILADP+ +EE +
Sbjct: 176 GII--------ENNDEFYKDLESPQRKLNIQHYLIPLSFSVI--DDYILADPSLDEEKLS 225
Query: 244 ETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQR 284
+ + + N++ L G ++++ T+ ++ C+ ++R
Sbjct: 226 SGTINITYNELNEICLLLSSGTSLISKTN-LKTCMEKAKER 265
>gi|18977939|ref|NP_579296.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus DSM
3638]
gi|29336823|sp|Q8U0M0.1|ECX2_PYRFU RecName: Full=Probable exosome complex exonuclease 2
gi|18893709|gb|AAL81691.1| hypothetical protein PF1567 [Pyrococcus furiosus DSM 3638]
Length = 277
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 139/272 (51%), Gaps = 18/272 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y L E R D R R + +G + A+GSAL K+G+T +L IK + P +
Sbjct: 14 YILNLLKEKKRIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGIKATLGEPFPD 73
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+P+ G ++ + + P+ SP PG P E A +A+ + I S +NL+++ + GK
Sbjct: 74 TPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESRALNLEKMVIAPGKIV 133
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD--GKIVMLPEEQKEENSEKE 204
+V++D++ LD DG L DA + A+AA N ++P V ++ G++ +L EKE
Sbjct: 134 RVVFIDVHVLDHDGNLMDAIGIGAIAALLNARVPKVLYNEETGEVEIL--------EEKE 185
Query: 205 PVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
P+ EK IP S+T NY++ DPT EEE IM+ +T+ D + + ++ K
Sbjct: 186 PLPVEK-------IPISVTFAKIGNYLVVDPTLEEEQIMDGRLTITTDETGHISAVQKSE 238
Query: 265 GAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
G V + ++ +E+ +I+ A+
Sbjct: 239 GGAFKL-EEVMYAVETAFKKAEEIRKIILNAL 269
>gi|223477853|ref|YP_002582207.1| exosome complex exonuclease RRP43 [Thermococcus sp. AM4]
gi|214033079|gb|EEB73907.1| exosome complex exonuclease RRP43 [Thermococcus sp. AM4]
Length = 273
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 136/268 (50%), Gaps = 18/268 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D RS R+ I G + A+GSA ++G T +L IK++V P + PD G
Sbjct: 19 LKEGKRIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEPFPDLPDRG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P+ SP PG P E A +A+ + I S + L++L +V GK +V++
Sbjct: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVFI 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD--GKIVMLPEEQKEENSEKEPVNKE 209
D++ LD DG LFDA L+A+AA ++P V ++ G+IV L E E PV +
Sbjct: 139 DVHVLDHDGNLFDATGLAAMAALLTTRVPKVEYNEETGEIVKLDE------YEPLPVRR- 191
Query: 210 KRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
IP +T + I+ DP +EE++M++ +T+ D + + ++ K G
Sbjct: 192 --------IPLPVTFAKIGSSIIVDPNLDEETVMDSRITITTDETGHISAVQKGEGGSFK 243
Query: 270 YTSAVQDCIALTRQRVKELHQILEEAIS 297
V I ++ EL +IL EA+
Sbjct: 244 L-EEVMYAIDTALKKADELRKILLEAVG 270
>gi|388582213|gb|EIM22518.1| ribosomal protein S5 domain 2-like protein [Wallemia sebi CBS
633.66]
Length = 422
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 153/280 (54%), Gaps = 25/280 (8%)
Query: 14 MEVDA--FRRLFPLRYFERHLAESIRPDARSLSRARNTTISM---GAVASADGSALAKIG 68
E+DA +RRL P Y R L +R D R L R+T+I+ G++ +A+GSA+ ++G
Sbjct: 147 FEIDAATYRRLRPREYLNRFLENDLRMDGRRLDEFRSTSINQENEGSIDTANGSAVVRLG 206
Query: 69 STTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTIS 128
+TTM+A +K++ P + + G V + + PI + +PG P+E A V++ +++D +
Sbjct: 207 NTTMIAGVKLKTALPD-PNREAGYVVPNIDLNPISNSKYKPGPPSEEAQVLSSRINDVLL 265
Query: 129 SSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTV--SLDD 186
SSG++N K+L++ GKA W+VY+D+ C++ DG FDAAL++ VAA N ++P D+
Sbjct: 266 SSGVLNQKDLTIEQGKAVWVVYIDVVCINFDGNAFDAALIAIVAALRNTRLPVTRYDFDN 325
Query: 187 GKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETL 246
+++ PEE S P+ K + G L ++ D E+S+ +
Sbjct: 326 DRVLANPEE-----STSVPLTKTIIPTSFG---------LFDGKLVTDLNDFEQSLAHSR 371
Query: 247 VTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVK 286
+TVV++ L + G + + D + LT++ +K
Sbjct: 372 LTVVINEDGTLAHMSSQGRNM---ADNLDDSLDLTQRAIK 408
>gi|62733251|gb|AAX95368.1| 3' exoribonuclease family, domain 2, putative [Oryza sativa
Japonica Group]
gi|62734006|gb|AAX96115.1| 3' exoribonuclease family, domain 2, putative [Oryza sativa
Japonica Group]
Length = 129
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 97/127 (76%), Gaps = 4/127 (3%)
Query: 177 LQIPTVSL-DDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADP 235
++IP VS+ DDG++ + E ++ E VN+EKRKLT+ +PFSLTC LHK+ +LADP
Sbjct: 3 VEIPLVSVGDDGRVFTVG--GNEGKAKYELVNREKRKLTITNVPFSLTCALHKDNVLADP 60
Query: 236 TSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEA 295
T+EEESI+ET VT+VLDSS+Q+VS+ KPGGAV + T+ +++CI+L + R ++L +IL +
Sbjct: 61 TAEEESIIETSVTIVLDSSDQIVSIQKPGGAVTSMTT-IKECISLAKDRRRKLREILMDN 119
Query: 296 ISGMEID 302
+ ME+D
Sbjct: 120 VEAMEVD 126
>gi|148703326|gb|EDL35273.1| exosome component 8, isoform CRA_b [Mus musculus]
Length = 212
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 14/222 (6%)
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E P +++PD G V + +PP+CS R G P E A V ++ ++D + +S +I ++L
Sbjct: 1 EFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDL 60
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+ GK AW++Y D+ CLD DG + DA + +AA N+Q+P V+++ E
Sbjct: 61 CISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------E 108
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
E + E K+K L + P + + + ++ DPT EEE + +TVV D +L
Sbjct: 109 ETALAEVNLKKKSYLNVRTNPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKL 168
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
L+KPGG+ L + +QDC++ R KE+ ++L+E I M
Sbjct: 169 CCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVSKLLDEVIQSM 209
>gi|240104092|ref|YP_002960401.1| exosome complex RNA-binding protein Rrp42 [Thermococcus
gammatolerans EJ3]
gi|259645408|sp|C5A2B8.1|ECX2_THEGJ RecName: Full=Probable exosome complex exonuclease 2
gi|239911646|gb|ACS34537.1| 3'-5' exoribonuclease, exosome complex exonuclease 2, Rrp42p-like
protein (Rrp42p) [Thermococcus gammatolerans EJ3]
Length = 273
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 136/268 (50%), Gaps = 18/268 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D RS R+ I G + A+GSA ++G T +L IK++V P + PD G
Sbjct: 19 LKEGKRIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEPFPDLPDRG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P+ SP PG P E A +A+ + I S + L++L +V GK +V++
Sbjct: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVFI 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD--GKIVMLPEEQKEENSEKEPVNKE 209
D++ LD DG LFDA L+A+AA +IP V ++ G+I+ L E EP
Sbjct: 139 DVHVLDHDGNLFDATGLAAMAALMTTKIPKVEYNEETGEIIKL--------DEYEP---- 186
Query: 210 KRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
L + +P +T + I+ DP +EE++M++ +T+ D + + ++ K G
Sbjct: 187 ---LPVKHVPIPVTFAKIGSSIIVDPNLDEETVMDSRLTITTDETGHISAVQKGEGGSFK 243
Query: 270 YTSAVQDCIALTRQRVKELHQILEEAIS 297
V I ++ EL +IL EA+
Sbjct: 244 L-EEVMYAIDTALKKADELRKILLEAVG 270
>gi|397652060|ref|YP_006492641.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus
COM1]
gi|393189651|gb|AFN04349.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus
COM1]
Length = 277
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 138/273 (50%), Gaps = 18/273 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y L E R D R R + +G + A+GSAL K+G+T +L IK + P +
Sbjct: 14 YILNLLKEKKRIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGIKATLGEPFPD 73
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+P+ G ++ + + P+ SP PG P E A +A+ + I S +NL+++ + GK
Sbjct: 74 TPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESRALNLEKMVIAPGKIV 133
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD--GKIVMLPEEQKEENSEKE 204
+V++D++ LD DG L DA + A+AA N ++P V ++ G++ +L EKE
Sbjct: 134 RVVFIDVHVLDHDGNLMDAIGIGAIAALLNARVPKVLYNEETGEVEIL--------EEKE 185
Query: 205 PVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
P+ EK IP +T NY++ DPT EEE IM+ +T+ D + + ++ K
Sbjct: 186 PLPVEK-------IPIPVTFAKIGNYLVVDPTLEEEQIMDGRLTITTDETGHISAVQKSE 238
Query: 265 GAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
G V + ++ +E+ +I+ A+
Sbjct: 239 GGAFKL-EEVMYAVETAFKKAEEIRKIILNALE 270
>gi|242399325|ref|YP_002994749.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM
739]
gi|242265718|gb|ACS90400.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM
739]
Length = 269
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 137/268 (51%), Gaps = 18/268 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D R L R T+ + A+GSAL K+G+T +L IK+E+ P + PD G
Sbjct: 16 LKEDKRIDGRGLEDFRPLTVETNVIEKAEGSALVKLGNTQVLVGIKVELGEPFPDLPDMG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + P+ SP PG P E+A +A+ + I S I+L++L +V GK ++++
Sbjct: 76 VITTNVEFVPLASPTFEPGPPDESAIELARIIDRGIRESQAIDLEKLVIVPGKLVRVIFI 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD--GKIVMLPEEQKEENSEKEPVNKE 209
D++ LD DG L DA+ + A+AA + +IP V ++ ++VML E EK PV +
Sbjct: 136 DVHVLDHDGNLLDASGIGAIAALLSTKIPKVDYNEEIEEVVML------EEYEKLPVKR- 188
Query: 210 KRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
IP +T ++ DP EEE +M+ +T+ D + + ++ K G
Sbjct: 189 --------IPIPVTLAKIGGNLVVDPNFEEEQVMDGKITITTDENGYISAVQKSEGGSFK 240
Query: 270 YTSAVQDCIALTRQRVKELHQILEEAIS 297
V + L ++ +E+ +++ AI
Sbjct: 241 LEEVVY-AVDLAYKKAEEVRKVVFGAIK 267
>gi|443898173|dbj|GAC75510.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp43 [Pseudozyma
antarctica T-34]
Length = 318
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 135/241 (56%), Gaps = 13/241 (5%)
Query: 13 EMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTM 72
++ F+RL P+ Y R L S R D RSL+ R+ T+S+G++++ADGS+ +IG+T+
Sbjct: 21 DLAATTFKRLHPVAYLSRFLDSSAREDGRSLAAFRDATLSLGSISTADGSSFVRIGNTSC 80
Query: 73 LAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGM 132
+AA+K E+ +P L +G + + +P +CS + G P A V+ +L ++SS +
Sbjct: 81 IAAVKAEIASPQLSRSRQGYLIPNVELPAVCSSKFKAGAPGPEAQVLTSRLLALLNSSNV 140
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD-DGKIVM 191
++ +L + G+A W +YLDI + DG DAA L+ VAA SN +P + D D ++V
Sbjct: 141 LDRDQLCIQEGQAVWCLYLDISFICFDGNALDAAALATVAALSNTTLPNATYDPDSEVVR 200
Query: 192 LPEEQKEENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVV 250
P ++ L +G IPF+ + I ++L+DPT+ E ++ + VT+
Sbjct: 201 C---------SSSPA--DRVALQMGSIPFASSFAIFENKHLLSDPTAFEAALASSHVTIA 249
Query: 251 L 251
L
Sbjct: 250 L 250
>gi|336477102|ref|YP_004616243.1| 3' exoribonuclease [Methanosalsum zhilinae DSM 4017]
gi|335930483|gb|AEH61024.1| 3' exoribonuclease [Methanosalsum zhilinae DSM 4017]
Length = 255
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 131/264 (49%), Gaps = 22/264 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D R + R+ + V A+GSA + G T ++A IK++ TP +
Sbjct: 8 YIYNLMLKGQREDHREFDQLRDIKVETDVVEKAEGSAKVQFGETQLIAGIKLQTGTPFPD 67
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
SPDEG + + PI SP PG P E A +++ + I SG I+LK+L + G+
Sbjct: 68 SPDEGVIITSMELNPIASPFFEPGPPNENAVEMSRVVDRGIRESGTIDLKKLCITEGEEV 127
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
WMV++DI+ L+ G + DAA L A+AA +IP + G+ + +P +
Sbjct: 128 WMVFIDIHVLNDGGNILDAASLGAIAALMTAKIPRETKGYGEDIPVPVRE---------- 177
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
+P +++ + + ++ DPT +EE+I +T +T++ + + ++ K G
Sbjct: 178 -----------MPVAVSLVDIEGQLMVDPTIDEETICDTKLTIISNQDGSICAMQKSGNG 226
Query: 267 VLAYTSAVQDCIALTRQRVKELHQ 290
L+ T V + + ++ E+ +
Sbjct: 227 ALS-TDQVFEAVETATEKASEIRE 249
>gi|388856078|emb|CCF50258.1| related to Exosome complex exonuclease RRP43 [Ustilago hordei]
Length = 339
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 158/301 (52%), Gaps = 31/301 (10%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
F+RL P+ Y R L S+R D RSLS R+ T+++G++++ADGS +IG T+ +AAIK
Sbjct: 46 FKRLHPISYLSRFLDSSVREDGRSLSSFRDATLTLGSISTADGSCFVRIGKTSCIAAIKA 105
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
EV P L P++G + + +P +CS +PG P E A V+ +L ++SS +++ ++L
Sbjct: 106 EVAPPQLSRPNDGYLIPNVELPAVCSSKFKPGAPGEEAQVLTSRLLALLNSSNLLDREQL 165
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+ KA W +YLDI + DG DAA+L+AVAA S+ ++ D + ++
Sbjct: 166 RIESAKAVWCLYLDISFICFDGNAMDAAVLAAVAALSDTKLSKACYD--------ADTEQ 217
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVV------- 250
S P ++ +L L +PF+ + I ++L+DPT+ E ++ + +T+
Sbjct: 218 VRSSSSPA--DRIRLQLDDMPFASSFAIFENTHLLSDPTAFEAALASSHLTIAISINTTS 275
Query: 251 LDSSNQ---LVSLYKPGGAVLAYTS----------AVQDCIALTRQRVKELHQILEEAIS 297
+ S+Q +VS G + +S ++ CI R K+L +L A S
Sbjct: 276 ISKSSQTKPVVSFLHHSGHLSTCSSDQSRSATDQENLETCIDRAHARAKQLATLLHNARS 335
Query: 298 G 298
Sbjct: 336 S 336
>gi|14591332|ref|NP_143410.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus horikoshii
OT3]
gi|29336585|sp|O59224.1|ECX2_PYRHO RecName: Full=Probable exosome complex exonuclease 2
gi|3257977|dbj|BAA30660.1| 274aa long hypothetical autoantigen like protein [Pyrococcus
horikoshii OT3]
Length = 274
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 135/266 (50%), Gaps = 14/266 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D R R I +G + A+GSAL K+GST +L IK + P ++P+ G
Sbjct: 19 LKEGKRIDDRGFEDYRPIEIEVGIIEKAEGSALVKLGSTQVLVGIKTTLGEPFPDTPNMG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P+ SP PG P E A +A+ I S +NL+++ +V GK +V++
Sbjct: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVTDRGIRESRALNLEKMVIVPGKIVRVVFI 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ LD DG L DA ++++AA N ++P V E EE E E + +EK
Sbjct: 139 DVHVLDHDGNLMDAIGIASIAALLNAKVPKV------------EYNEETGEVE-ILEEKE 185
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
L + IP +T N ++ DP+ EEE +M+ +TV D + + ++ K G
Sbjct: 186 PLPVERIPIPVTFAKIGNILVVDPSLEEELVMDGRLTVTTDETGHISAVQKGEGGAFKL- 244
Query: 272 SAVQDCIALTRQRVKELHQILEEAIS 297
V + ++ +E+ +I+ EAI
Sbjct: 245 EEVMYAVETAFKKAEEIRKIVLEAIK 270
>gi|225711778|gb|ACO11735.1| Exosome complex exonuclease RRP43 [Caligus rogercresseyi]
Length = 279
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 140/257 (54%), Gaps = 19/257 (7%)
Query: 17 DAFRRLFPLRYFERHLAESIRPDAR--SLSRARNTTISMGAVASADGSALAKIGSTTMLA 74
+ FRR+ P YF +H+ + +R D R L R +IS G++ASADGSA+ + G TT++
Sbjct: 5 EVFRRVQPKEYFSQHIEKGLRLDGREGGLESIRPISISSGSIASADGSAIVRKGHTTVIC 64
Query: 75 AIKMEVMTPSLESPDEGCVSIDFHMPPICSPLV--RPGRPAEAAPVVAKQLSDTISSSGM 132
I +++ + E+P +G + +P +C P + G AE A ++ K + D I +S +
Sbjct: 65 GITLQIASLDEETPTKGYIVPHVDLPSMCHPRIYKSKGPTAEEAMILTKFIMDVILNSEV 124
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVML 192
++ K+L +V G+ W++ +D+ CL+ DG L DA + + + A +L+ P V
Sbjct: 125 VDPKDLCIVPGEIVWVLKIDLTCLNQDGNLRDALVTALILALKSLRFPKVV--------- 175
Query: 193 PEEQKEENSEKEPVN---KEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVT 248
K E+ +K +N KE L L IP S++ ++ +L DPT EEE+ +T
Sbjct: 176 --SYKAEDEDKTQINVFEKEHSSLRLKNIPVSVSIAVMEGERLLVDPTDEEETFATDSIT 233
Query: 249 VVLDSSNQLVSLYKPGG 265
VVL++ +L L K GG
Sbjct: 234 VVLNAEEELCYLSKNGG 250
>gi|429216659|ref|YP_007174649.1| RNase PH-related exoribonuclease [Caldisphaera lagunensis DSM
15908]
gi|429133188|gb|AFZ70200.1| RNase PH-related exoribonuclease [Caldisphaera lagunensis DSM
15908]
Length = 284
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 135/262 (51%), Gaps = 17/262 (6%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R R +I + A+GSAL K+G+T +LA IK+E P + PDEG + +
Sbjct: 28 RADERDFYSPRKISIQTNVLEKANGSALVKLGNTQVLAGIKIEPGEPFADMPDEGVLQVH 87
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ SP PG P E A +A+ + ++ ++LK L + G WM++LD+Y L
Sbjct: 88 AELVPLASPQFEPGPPDENAIELARVIDRSLRDPKAVDLKSLVIRPGDKVWMLWLDLYIL 147
Query: 157 DADGALFDAALLSAVAAFSNLQIPTV-SLDDGKIVMLPEEQKEENSEKE-PVNKEKRKLT 214
D DG LFDA++L+++AA S ++P ++ G+I K N + P+ KR +T
Sbjct: 148 DYDGNLFDASMLASMAALSTARMPEFEEMETGEI-------KLTNKISDIPIKLNKRIVT 200
Query: 215 LGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAV 274
+T +NYI+ DP +EE I +T + D + +V + K G ++ +
Sbjct: 201 -------VTTAKIENYIIVDPNLDEEIISDTRSVISFDENGNIVGVQKTGMGSVS-QEEL 252
Query: 275 QDCIALTRQRVKELHQILEEAI 296
+ + ++ Q + ++L A+
Sbjct: 253 DNIVNISSQAAQVYFKLLNNAL 274
>gi|343426343|emb|CBQ69873.1| related to Exosome complex exonuclease RRP43 [Sporisorium reilianum
SRZ2]
Length = 323
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 162/309 (52%), Gaps = 35/309 (11%)
Query: 11 SSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGST 70
++++ F+RL P+ Y R L SIR D R+L+ R T+++G++++ADGS+ +IG+T
Sbjct: 25 NADLVATTFKRLHPISYLSRFLDASIREDGRALTAFREATLTLGSISTADGSSFVRIGNT 84
Query: 71 TMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSS 130
+ +AAIK EV P L EG + + +P +CS +PG P + + V+ +L ++SS
Sbjct: 85 SCIAAIKAEVAAPQLSRSREGYLIPNVELPAVCSSKFKPGVPGDESQVLTSRLLALLNSS 144
Query: 131 GMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIV 190
+++ ++L + KA W +YLDI + DG DAA+L+AVAA SN ++ S D
Sbjct: 145 NVLDREQLCIHEAKAVWCLYLDISFICFDGNAMDAAVLAAVAALSNTKLAKASYD----- 199
Query: 191 MLPEEQKEENSEKEPVNKEKRKLTLGGIPF-SLTCILHKNYILADPTSEEESIMETLVTV 249
++E+ + ++ L L +P S I ++L+DPT+ E ++ + +T+
Sbjct: 200 --------PDTEQVRCSSDRTALLLQELPLASSFSIFENQHLLSDPTTFESALSSSHLTI 251
Query: 250 V--LDSSN--QLVSLYKPG------GAVLAYTSA-----------VQDCIALTRQRVKEL 288
LD ++ + S KP L+ TSA +Q CI R ++L
Sbjct: 252 AVSLDPTSIPKSTSKTKPTVTFLHQSGRLSTTSADPSHTATDQQNLQACIDRAYSRARQL 311
Query: 289 HQILEEAIS 297
+L +A S
Sbjct: 312 ASLLRDARS 320
>gi|320166868|gb|EFW43767.1| opa-interacting protein 2 [Capsaspora owczarzaki ATCC 30864]
Length = 269
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 144/288 (50%), Gaps = 54/288 (18%)
Query: 13 EMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTM 72
+ + + F+R+ PL Y+ R L++ +RPD R L R R+T++S+ +A+A S+ A
Sbjct: 18 QRDAETFKRVHPLEYYRRFLSQQLRPDGRGLERFRDTSLSINPLATAHASSTAT------ 71
Query: 73 LAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGM 132
PS+ +P P+ S + G AE+ P A + G+
Sbjct: 72 ---------APSVPAPTT----------PLKSQSAQAGM-AESNPADA-------GARGI 104
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD--DGKIV 190
++L EL + G+ W +Y+D CLD G DAALL+ V A L +P V+LD GK
Sbjct: 105 VDLNELCITRGELCWCLYVDAVCLDDAGNSTDAALLAIVGALHALVLPAVTLDAASGKPG 164
Query: 191 MLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVT 248
P + +LTL PF+ T L + LADPT+EEE++ VT
Sbjct: 165 FNP-------------SGNSTQLTLPATPFAATFSLFDGNAFTLADPTAEEEAMQSGAVT 211
Query: 249 VVLDSSNQ---LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILE 293
+V D S++ L +++KPGG L+ T A++ CI+ +R+K L +L+
Sbjct: 212 IVADVSSENPTLWTVHKPGGTPLSAT-ALRQCISQAVERIKTLDALLQ 258
>gi|333986696|ref|YP_004519303.1| 3' exoribonuclease [Methanobacterium sp. SWAN-1]
gi|333824840|gb|AEG17502.1| 3' exoribonuclease [Methanobacterium sp. SWAN-1]
Length = 263
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 138/272 (50%), Gaps = 35/272 (12%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+ E R D R+ R ++ G + A+GSA KIG+T ++ +K ++ P ++P G
Sbjct: 17 IKEGKRTDGRAFDEYREISLETGVIDKAEGSARVKIGNTQIMVGVKTQIAAPFSDTPQMG 76
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ + + P+ +P PG P E + +++ + + +++L++L ++ GK WM+++
Sbjct: 77 VLMTNSELLPMAAPNFEPGPPDENSVELSRVTDRCVREAKVVDLEKLCIIEGKKVWMIFV 136
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIV-----MLPEEQKEENSEKEPV 206
D++ LD +G L D A+L VAA N +IPT +++D +IV M+P
Sbjct: 137 DLHILDYEGNLMDTAVLGTVAALMNAKIPTATVEDDEIVLDYDKMIP------------- 183
Query: 207 NKEKRKLTLGGIPFS---LTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+PF+ L C K + ++ DP+ EEE IM+ +++ + + + ++
Sbjct: 184 -----------LPFNEKALMCTFAKIDDELVVDPSREEEEIMDARISIGMRADGTICAMQ 232
Query: 262 KPGGAVLAYTSAVQDCIALTRQRVKELHQILE 293
K GGA + + + +++ KEL + L+
Sbjct: 233 K-GGAKPFKKDEILKAVTIAKEKTKELREYLK 263
>gi|284161629|ref|YP_003400252.1| 3' exoribonuclease [Archaeoglobus profundus DSM 5631]
gi|284011626|gb|ADB57579.1| 3' exoribonuclease [Archaeoglobus profundus DSM 5631]
Length = 259
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 22/266 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y L + R D R+ R I G + A+GSA K+G+T ++A +KM++ P +
Sbjct: 13 YVLSKLRDGERIDGRAFDEIRPIEIKTGLIKKAEGSAYVKLGNTQVVAGVKMQIGEPFPD 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+PD+G + + + P+ SP PG P E A +A+ + I S ++LK+L + G+
Sbjct: 73 TPDQGIIITNAELVPLASPTFEPGPPDENAIELARVVDRGIRHSEAVDLKKLCIEEGEKV 132
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W++++DI+ LD DG L DA+ L+A+AA N +P + G LP
Sbjct: 133 WIIFIDIWALDDDGNLMDASALAAIAALLNTTVPAERFEVGDDFPLP------------- 179
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
+ +P ++T +++ + IL DP +E S+ + +T+ D ++ +VS+ K G
Sbjct: 180 --------VRDLPVAITSLVYDDKILVDPCRDELSVGKNTITITTDQNDNIVSIQKSGPF 231
Query: 267 VLAYTSAVQDCIALTRQRVKELHQIL 292
+L+ A ++ + ++ ++ +E+ ++L
Sbjct: 232 LLS-EKAFEEVLEVSIRKAREVRKLL 256
>gi|312137049|ref|YP_004004386.1| ribosomal RNA-processing protein rrp42 [Methanothermus fervidus DSM
2088]
gi|311224768|gb|ADP77624.1| ribosomal RNA-processing protein RRP42 [Methanothermus fervidus DSM
2088]
Length = 270
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 142/259 (54%), Gaps = 19/259 (7%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D RS R+ I G ++ A+GSA K+G T +L +K + P ++P+ G + +
Sbjct: 26 RLDGRSFYEFRDIKIKTGVISKAEGSARVKLGDTQVLVGVKPTIGEPFPDNPNLGIIITN 85
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ SP PG P E + +A+ + I S M++L++L ++ G+ W++++D++ L
Sbjct: 86 SELLPMASPTFEPGPPDERSIELARVVDRCIRESNMLDLEKLCIIEGEKVWILFIDLHIL 145
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG LFDA++L AVAA + ++P VS++D ++V+ ++S E ++ K K+ +
Sbjct: 146 DYDGNLFDASVLGAVAALMDTKLPKVSIEDDEVVI-------DDSSVELLDI-KDKVAM- 196
Query: 217 GIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAV 274
C K + ++ DP+ EEE I+ +++ ++S ++ ++ K G L+ +
Sbjct: 197 -------CTFAKIGDELVLDPSLEEEEILTARLSIGMNSEGKICAMQKGGKGSLSRED-I 248
Query: 275 QDCIALTRQRVKELHQILE 293
I + ++ EL Q LE
Sbjct: 249 SKAINIAEEKTPELLQHLE 267
>gi|126465759|ref|YP_001040868.1| exosome complex RNA-binding protein Rrp42 [Staphylothermus marinus
F1]
gi|126014582|gb|ABN69960.1| ribosomal RNA-processing protein RRP42 [Staphylothermus marinus F1]
Length = 285
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 137/272 (50%), Gaps = 15/272 (5%)
Query: 28 FERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLES 87
++ L + R D R L R + + + A+GSA K+G+T ++ +K+E+ TP +
Sbjct: 19 IKKLLKQGERIDGRKLDEYRPIEVFLNPIPKAEGSAAVKLGNTFVITGVKLEIGTPYSDR 78
Query: 88 PDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAW 147
P+EG + + P+ SP PG P E A A+ + ++ I L++L ++ GK W
Sbjct: 79 PNEGVLQVHAEFVPLASPTFEPGPPDENAIETARVIDRSLREPRAIRLEDLVVIPGKKVW 138
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIP-TVSLDDGKIVMLPEEQKEENSEKEPV 206
+++ D+Y +D G + D +LS + A + +IP VS++D +V+ K P+
Sbjct: 139 LIFNDLYLIDHYGNIVDTGMLSTMLALNMTKIPRIVSIEDENVVI----DKTVKEAPLPL 194
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
N +TLG I + I+ DP EEE ++++ +T +D +N++V + K G
Sbjct: 195 NLNVVTVTLGII---------DDVIIVDPNIEEELVVDSRITFAVDETNRIVGIQKMGMK 245
Query: 267 VLAYTSAVQDCIALTRQRVKELHQILEEAISG 298
+ + + + ++ ELH +L E ++
Sbjct: 246 GIK-PKMIDQLVDIALKKASELHSLLREVLNN 276
>gi|383319304|ref|YP_005380145.1| RNase PH-related exoribonuclease [Methanocella conradii HZ254]
gi|379320674|gb|AFC99626.1| RNase PH-related exoribonuclease [Methanocella conradii HZ254]
Length = 259
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 135/288 (46%), Gaps = 31/288 (10%)
Query: 7 SEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAK 66
SED+ +E++ D Y + R D R R ++ +G ++ A+GSA K
Sbjct: 2 SEDVIAEIKRD---------YIYSLANQGDRADGRKFDEFRPISVEVGVISKAEGSARVK 52
Query: 67 IGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDT 126
IG + ++ IK++ P ++PD G + + + P+ SP G P E A +A+ +
Sbjct: 53 IGESQVVVGIKVQPGEPFPDAPDSGVIITNLELVPLASPTFEAGPPREDAIELARVVDRG 112
Query: 127 ISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD 186
+ SG I+L +L + G+ WMV++D++ LD DG L DA+ L A+AA N IP
Sbjct: 113 VRESGAIDLSKLCIESGQKVWMVFIDVHVLDHDGNLMDASSLGAIAALMNTVIPNSRFGL 172
Query: 187 GKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETL 246
G+ V LP L IP +T + I+ DP+ +EE++
Sbjct: 173 GEDVKLP---------------------LRDIPIGVTAVDIGGAIMLDPSLDEENVASCK 211
Query: 247 VTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEE 294
+TV+ + L + K G L V+ + L +++ + + LEE
Sbjct: 212 LTVITNKEGALAGMQKSGVGTLT-PEKVKYIVHLAKEKANVIREKLEE 258
>gi|14601411|ref|NP_147948.1| exosome complex RNA-binding protein Rrp42 [Aeropyrum pernix K1]
gi|29337018|sp|Q9YC05.1|ECX2_AERPE RecName: Full=Probable exosome complex exonuclease 2
gi|5105129|dbj|BAA80443.1| exosome complex exonuclease Rrp42 homologue [Aeropyrum pernix K1]
Length = 276
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 137/267 (51%), Gaps = 15/267 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + RP R L RN I G + A+GSAL K+G T ++A +K V P ++P++G
Sbjct: 23 LRKGWRPGDRDLKTPRNVKIETGIIEKAEGSALVKLGKTQVIAGVKAGVGAPFKDTPNQG 82
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+++ P+ SP+ PG P E A +A+ + ++ G ++L+ L + G+ W++++
Sbjct: 83 VLTVHAEFVPLASPVFEPGPPDENAIELARVVDRSLREVGAVDLESLVIRPGEKVWVLWV 142
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD-GKIVMLPEEQKEENSEKEPVNKEK 210
D+Y +D DG LFDA++L+ +A ++P + G+I++ E + EE
Sbjct: 143 DLYIIDHDGNLFDASMLATMAVLLTARLPRYEESETGEIIISKEGEGEE----------- 191
Query: 211 RKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAY 270
L + ++T YI+ DP EEE++ + + +D + ++V L K G L
Sbjct: 192 --LKVKTRVVTVTTAKIDRYIVVDPNIEEEAVSDVRLVTAVDENGRIVGLQKTGMGSLT- 248
Query: 271 TSAVQDCIALTRQRVKELHQILEEAIS 297
+ ++ I + + K + LEEAI
Sbjct: 249 EADIETMIGYSLEASKVYFKALEEAIK 275
>gi|389612638|dbj|BAM19744.1| unknown protein, partial [Papilio xuthus]
Length = 204
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 111/195 (56%), Gaps = 18/195 (9%)
Query: 51 ISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPG 110
+++ + SA+ SAL K G+TT++ K+E+ P E PD G + + + P+CSP RPG
Sbjct: 1 LNINTIKSAETSALVKYGNTTVICGTKLELAAPKAEDPDSGFLVTNVELVPLCSPKFRPG 60
Query: 111 RPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSA 170
P++ A V++ +S+ I++S INLK+L +V K AW++Y DI CLD DG + DA + +
Sbjct: 61 PPSDHAQVISNVVSEIINNSKFINLKDLCIVSDKLAWVLYCDIVCLDNDGNVVDACITAL 120
Query: 171 VAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR-KLTLGGIP----FSLTCI 225
A+ L +PTV+ D PE +E+ V+ R L + G+P F++
Sbjct: 121 TASLKTLSLPTVTYD-------PE------TEEIKVDTNNRISLKVNGLPVATSFAIFPN 167
Query: 226 LHKNYILADPTSEEE 240
++ +L DP + EE
Sbjct: 168 CERSILLTDPNTFEE 182
>gi|389860736|ref|YP_006362976.1| ribosomal RNA-processing protein RRP42 [Thermogladius
cellulolyticus 1633]
gi|388525640|gb|AFK50838.1| ribosomal RNA-processing protein RRP42 [Thermogladius
cellulolyticus 1633]
Length = 282
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 129/238 (54%), Gaps = 19/238 (7%)
Query: 30 RHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPD 89
R L + R D R L RN ++S+G ++ A+GSAL K+G T ++A +K E+ TP + P+
Sbjct: 21 RMLKKGERIDNRGLHDYRNISVSVGIISKAEGSALVKLGGTQVIAGVKAELGTPFEDRPN 80
Query: 90 EGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMV 149
EG + + P+ SP PG P E A VA+ + ++ +++L +L + G+ AW++
Sbjct: 81 EGVLQVHAEFVPLASPSFEPGPPNEEAIEVARVIDRSLREPKVVDLSKLVIQPGRLAWVI 140
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKE---PV 206
Y D+Y +D DG + D +++++ A + ++P ++ E K K+ P+
Sbjct: 141 YDDVYVIDHDGNILDTGMIASMIALATSKLP-------RLDTTAEGIKVVYGTKDTPLPI 193
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
N +T+G + + ++ DP+ EEES+++T +++ +D ++V L K G
Sbjct: 194 NTLVTTVTMG---------VLGDILVVDPSLEEESVIDTFLSISVDEKGRIVGLQKRG 242
>gi|71022771|ref|XP_761615.1| hypothetical protein UM05468.1 [Ustilago maydis 521]
gi|46101168|gb|EAK86401.1| hypothetical protein UM05468.1 [Ustilago maydis 521]
Length = 332
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 156/323 (48%), Gaps = 38/323 (11%)
Query: 11 SSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGST 70
++++ F+RL P+ Y R L SIR D R L+ R+ TI++G++++ADGS+ +IG+T
Sbjct: 5 NADLVATTFKRLRPISYLSRFLDASIREDGRPLAAFRDATITLGSISTADGSSFVRIGNT 64
Query: 71 TMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSS 130
+ +AAIK EV TP L P EG + + +P +CS +PG P + A V+ +L ++SS
Sbjct: 65 SCIAAIKAEVATPQLSRPREGYLIPNVELPAVCSSKFKPGAPGDEAQVLTSRLLALLNSS 124
Query: 131 GMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAF--SNLQIPTVSLDD-- 186
+++ + L + A W +YLDI + DG DAA+L+AV+A S I T +L
Sbjct: 125 NLLDRQLLCIQDAIAVWCLYLDISFICFDGNAMDAAVLAAVSALSDSKFAIHTYTLSHSR 184
Query: 187 -------------GKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPF-SLTCILHKNYIL 232
K LP + ++E+ + + L L +PF S I Y+L
Sbjct: 185 PSSLTDALVLTPTAKTAKLPAATYDPDTEQVRCSSSRTALHLEHVPFASSFSIFENQYLL 244
Query: 233 ADPTSEEESIMETLVTVV--------------------LDSSNQLVSLYKPGGAVLAYTS 272
+DPT+ E ++ + TV L S +L +
Sbjct: 245 SDPTAFESALSSSHATVAVLLNPSALPKSSKAKPTITYLHQSGRLSTTSSDSTTSATDQH 304
Query: 273 AVQDCIALTRQRVKELHQILEEA 295
+Q CI + R K+L +L +A
Sbjct: 305 ILQLCIDRSYSRAKQLASLLHDA 327
>gi|304314829|ref|YP_003849976.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302588288|gb|ADL58663.1| predicted exosome RNA binding protein [Methanothermobacter
marburgensis str. Marburg]
Length = 267
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 147/263 (55%), Gaps = 19/263 (7%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D RSL R+ +I G ++ A+GS+ K+G+T ++ +K ++ P ++P+ G + +
Sbjct: 21 RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTN 80
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ SP PG P E + +++ + + S MI+L++L ++ G WM++LD++ +
Sbjct: 81 SELLPMASPTFEPGPPDERSVELSRVVDRCVRESQMIDLEKLCIIEGSKVWMLFLDLHII 140
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG LFDAA+L+ VAA + +IP ++DG++++ EN + P+N++
Sbjct: 141 DYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVLV-----DRENMQPLPINRK------- 188
Query: 217 GIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAV 274
+L C K + I+ DP EEE I+ +++ + + ++ K G L +
Sbjct: 189 ----ALMCTFAKIGDEIILDPCLEEEDILTARLSIGVTEDGSICAMQKGGEGALTRDDVL 244
Query: 275 QDCIALTRQRVKELHQILEEAIS 297
+ +++ R++V +L + L+++++
Sbjct: 245 R-AVSIAREKVPQLIEYLDKSMA 266
>gi|327400939|ref|YP_004341778.1| exosome complex exonuclease 2 [Archaeoglobus veneficus SNP6]
gi|327316447|gb|AEA47063.1| exosome complex exonuclease 2 [Archaeoglobus veneficus SNP6]
Length = 259
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 138/269 (51%), Gaps = 22/269 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y L + R D R R+ I +A A+GSAL K+G+T ++ +KM+ P +
Sbjct: 13 YVLSRLRDGERIDGRKFDEFRHIEIETNIIAKAEGSALVKLGNTQVVVGVKMQPGEPFPD 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+PD+G + + + P+ SP PG P E + +A+ + I S ++L +L + G+
Sbjct: 73 APDKGIIITNAELVPLASPTFEPGPPDENSIELARVVDRGIRESEAVDLTKLCIEEGEKV 132
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W++++DI+ LD DG L DA+ L+A+AA +P D G+ LP
Sbjct: 133 WLIFIDIHALDDDGNLMDASSLAAIAALLTTTVPAERFDVGEDFPLP------------- 179
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
+ +P S+T ++ N IL DP+ +E S+ E +T+ D ++ +V++ K G
Sbjct: 180 --------VRDLPISVTSLIVNNRILVDPSRDEVSVGEYFMTITTDQADNIVAMQKSGSY 231
Query: 267 VLAYTSAVQDCIALTRQRVKELHQILEEA 295
+L+ + I ++ ++ +E+ ++L++
Sbjct: 232 LLS-EEKFYELIDISIEKAREIRELLKDV 259
>gi|432328766|ref|YP_007246910.1| RNase PH-related exoribonuclease [Aciduliprofundum sp. MAR08-339]
gi|432135475|gb|AGB04744.1| RNase PH-related exoribonuclease [Aciduliprofundum sp. MAR08-339]
Length = 270
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 131/275 (47%), Gaps = 22/275 (8%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
+Y + ++ R D R+ R I G + A+GSAL ++G T +L +K+E TP
Sbjct: 17 KYIHKLASQGTRVDGRNFDEIRELKIVRGKIPRAEGSALVELGRTKVLVGVKIEPGTPFP 76
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
++P +G ++ + + P+ SP PG P E A +A+ + I I+L++L + G+
Sbjct: 77 DTPAQGILTTNAELSPMASPTFEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEGEQ 136
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W+V++DI+ LD DG LFDA+ A+AA + +P + G+ LP +
Sbjct: 137 VWVVFIDIHVLDYDGNLFDASGYGALAALTEATVPAAKHELGEDFKLPVQH--------- 187
Query: 206 VNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
P +T N+++ADP +EESI +TV + ++ ++ K
Sbjct: 188 ------------YPVPVTFAKIGNWLVADPNLDEESIASARLTVTTNEEGKINAMQKGLS 235
Query: 266 AVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
Y VQ I ++ +++ I+ +G E
Sbjct: 236 GTFTY-EEVQKAINMSMDIGRKVRDIILGDSNGQE 269
>gi|147919674|ref|YP_686582.1| exosome complex RNA-binding protein Rrp42 [Methanocella arvoryzae
MRE50]
gi|121687882|sp|Q0W2Y7.1|ECX2_UNCMA RecName: Full=Probable exosome complex exonuclease 2
gi|110621978|emb|CAJ37256.1| putative exosome complex exonuclease 2 [Methanocella arvoryzae
MRE50]
Length = 260
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 131/287 (45%), Gaps = 31/287 (10%)
Query: 7 SEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAK 66
SED+ +E++ D Y + R D R R ++ G + A+GSA K
Sbjct: 2 SEDVIAEIKRD---------YIYSLANQGDRADGRKFDEFRAISVETGVINKAEGSARVK 52
Query: 67 IGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDT 126
IG + ++ +K++ P ++PD G + + + P+ SP G P E A +A+ +
Sbjct: 53 IGDSQVVVGVKIQPGEPFPDTPDSGVIITNLELVPLASPTFESGPPREDAIELARVVDRG 112
Query: 127 ISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD 186
+ SG I+L +L + G+ WMV++D++ LD DG L DAA L A+AA +IP
Sbjct: 113 VRESGAIDLSKLCIESGQKVWMVFIDVHVLDHDGNLMDAASLGAIAALKATKIPNSKFGL 172
Query: 187 GKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETL 246
G+ V LP L +P +T + I+ DP+ +EES+
Sbjct: 173 GEDVKLP---------------------LNDVPIGVTAVNIGGAIMLDPSLDEESVAPCK 211
Query: 247 VTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILE 293
+TV+ + + + K G L + I L +++ L + LE
Sbjct: 212 LTVITNKEGAISGMQKSGVGTLT-PDQINHIIRLAKEKANVLREKLE 257
>gi|212223176|ref|YP_002306412.1| exosome complex RNA-binding protein Rrp42 [Thermococcus onnurineus
NA1]
gi|226740342|sp|B6YSE7.1|ECX2_THEON RecName: Full=Probable exosome complex exonuclease 2
gi|212008133|gb|ACJ15515.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
Length = 272
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 137/268 (51%), Gaps = 18/268 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D RSL R+ I + + A+GSA K+G+T +L IK+++ P + P++G
Sbjct: 19 LKEGKRVDGRSLEDYRDLEIKINVIEKAEGSAWVKLGNTQVLVGIKVDMGEPFPDLPEKG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P+ SP PG P E A +A+ + I SG + L++L +V GK +V++
Sbjct: 79 VITTNVELVPLASPSFEPGPPDERAIELARVVDRGIRESGAVELEKLVIVPGKLVRVVFI 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD--GKIVMLPEEQKEENSEKEPVNKE 209
D++ LD DG L DA+ + A+AA + ++P V D+ G++ +L E E PV+K
Sbjct: 139 DVHVLDHDGNLLDASGIGAIAALMSAKMPKVVYDEESGEVQILDE------YEPLPVSK- 191
Query: 210 KRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
+P +T +L DP +EE +M+ +T+ D + + S+ K G
Sbjct: 192 --------MPIPVTIAKVGGNLLVDPNLDEELVMDGRITITTDENGMISSVQKSEGGSFK 243
Query: 270 YTSAVQDCIALTRQRVKELHQILEEAIS 297
V I L + E+ + + EA+
Sbjct: 244 LEE-VMYAIDLALTKAAEIREKVLEAVG 270
>gi|282165296|ref|YP_003357681.1| probable exosome complex exonuclease 2 [Methanocella paludicola
SANAE]
gi|282157610|dbj|BAI62698.1| probable exosome complex exonuclease 2 [Methanocella paludicola
SANAE]
Length = 259
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 136/288 (47%), Gaps = 31/288 (10%)
Query: 7 SEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAK 66
SED+ +E++ D Y ++ R D R R TI +G + A+GS+
Sbjct: 2 SEDVIAEIKKD---------YIYSLASQGDRADGRKFDEFRPVTIKVGVIGKAEGSSDVM 52
Query: 67 IGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDT 126
IG + ++ +K++ P +++PD+G + + + P+ SP G P E A +A+ +
Sbjct: 53 IGDSRVVVGVKIQPGEPFMDTPDKGVIITNLELVPLASPTFETGPPREDAIELARVVDRG 112
Query: 127 ISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD 186
+ S I+L +L + G+ WMV++D++ LD DG L DAA + A+AA + +IP
Sbjct: 113 VRESEAIDLSKLCIESGQKVWMVFIDVHVLDHDGNLMDAASMGAIAALMSAKIPNAKFGL 172
Query: 187 GKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETL 246
G E KL L +P +T + + I+ DP+ +EE++
Sbjct: 173 G---------------------EDAKLPLEDVPVGVTAVKIGSSIILDPSLDEENVASCK 211
Query: 247 VTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEE 294
+TV+ + L + K G L V+ + + +++ L Q LEE
Sbjct: 212 LTVITNKEGALAGMQKSGVGTLT-PDEVKYIVHIAKEKANVLRQKLEE 258
>gi|147807906|emb|CAN75360.1| hypothetical protein VITISV_041000 [Vitis vinifera]
Length = 674
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
Query: 84 SLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGG 143
+L+ D G ++I+ MPPICSPLVRPGRP E AP V+KQLSD I SS MINLKELSLV G
Sbjct: 363 ALDIKDGGSIAIEVCMPPICSPLVRPGRPVEEAPFVSKQLSDAILSSSMINLKELSLVSG 422
Query: 144 KAAWMVYLDIYCLDADGALFDAAL 167
KAAWM YLD+YCLDA G+L DAA+
Sbjct: 423 KAAWMAYLDVYCLDAYGSL-DAAI 445
>gi|18313177|ref|NP_559844.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum aerophilum
str. IM2]
gi|29336869|sp|Q8ZVN0.1|ECX2_PYRAE RecName: Full=Probable exosome complex exonuclease 2
gi|18160691|gb|AAL64026.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
Length = 274
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 126/237 (53%), Gaps = 13/237 (5%)
Query: 29 ERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESP 88
R LA R D R + RN I++G V +ADGSA K+G T ++A +K+ + P ++P
Sbjct: 21 RRLLATKYRVDGRGPEQTRNVEINVGVVKTADGSAEVKLGKTHVVAGVKVGLGQPFPDAP 80
Query: 89 DEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWM 148
DEG + ++ + P SP G P E A +A+ + I G ++ K+L++ GGK A++
Sbjct: 81 DEGVLVVNAEVLPHASPYTEVGPPDEFAIELARVVDRGIRHCGYVDFKKLAVEGGK-AYV 139
Query: 149 VYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNK 208
+++D+Y ++ DG L D A L++VAA N Q+P V D+ +V L N PV+
Sbjct: 140 LWIDLYVINDDGNLIDVANLASVAALKNTQLPVVVKDEAGVVKL----DRNNKAPLPVDI 195
Query: 209 EKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
K P +++ N + DPT EEE ++ +T S +++V+ K G
Sbjct: 196 SK-------APIAVSVGKIGNVLFLDPTFEEELSLDGRITFTF-SEDKIVAAQKTLG 244
>gi|15678709|ref|NP_275825.1| exosome complex RNA-binding protein Rrp42 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|29336572|sp|O26778.1|ECX2_METTH RecName: Full=Probable exosome complex exonuclease 2
gi|295321489|pdb|2WNR|A Chain A, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321491|pdb|2WNR|C Chain C, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321493|pdb|2WNR|E Chain E, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|2621767|gb|AAB85187.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 271
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 146/263 (55%), Gaps = 19/263 (7%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D RSL R+ +I G ++ A+GS+ K+G+T ++ +K ++ P ++P+ G + +
Sbjct: 25 RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTN 84
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ SP PG P E + +++ + I S MI+L++L ++ G WM++LD++ +
Sbjct: 85 SELLPMASPTFEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHII 144
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG LFDAA+L+ VAA + +IP ++DG++V+ E + PVN++
Sbjct: 145 DYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVVI-----NREKMQPLPVNRK------- 192
Query: 217 GIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAV 274
+L C K N I+ DP+ EEE I+ +++ + + ++ K G L +
Sbjct: 193 ----ALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTRDDVL 248
Query: 275 QDCIALTRQRVKELHQILEEAIS 297
+ +++ ++V +L + L+++++
Sbjct: 249 K-AVSIAVEKVPQLIEYLDKSMT 270
>gi|408382268|ref|ZP_11179813.1| exosome complex RNA-binding protein Rrp42 [Methanobacterium
formicicum DSM 3637]
gi|407814924|gb|EKF85546.1| exosome complex RNA-binding protein Rrp42 [Methanobacterium
formicicum DSM 3637]
Length = 266
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 139/264 (52%), Gaps = 25/264 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R+L + R TI G + A+GSA KIG+T ++ K ++ P ++P+ G + +
Sbjct: 23 RADGRALDQYREVTIETGVIKKAEGSARVKIGNTQIIVGAKPQIGEPFPDTPNVGVLITN 82
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ +P G P E + +++ + +++L++L ++ GK WM++LD++ +
Sbjct: 83 SELVPMAAPNFEAGPPNETSVELSRVTDRCVREGKVVDLEKLVIIPGKKVWMIFLDLHVI 142
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG L DAA+L +VAA N +IP+ +++D ++V+ E T+
Sbjct: 143 DYDGNLMDAAVLGSVAALMNTKIPSTTIEDDEVVIDYE-------------------TMV 183
Query: 217 GIPFS---LTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
IP + L C L K ++ADP+ EE+ +++ +++ + + ++ K GG+V
Sbjct: 184 PIPIAEQPLMCTLAKIGGELVADPSLEEDDVLDARISIGVRVDGSICAMQK-GGSVPLTR 242
Query: 272 SAVQDCIALTRQRVKELHQILEEA 295
+ + + + + KEL + + +A
Sbjct: 243 EEILKAVKIAQTKTKELREFIPKA 266
>gi|255075205|ref|XP_002501277.1| predicted protein [Micromonas sp. RCC299]
gi|226516541|gb|ACO62535.1| predicted protein [Micromonas sp. RCC299]
Length = 222
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 131/226 (57%), Gaps = 5/226 (2%)
Query: 73 LAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGM 132
+AA+K+E P ++PD G + + PP+CS RPGRP + A VA+++ D + S
Sbjct: 1 MAAVKLEACQPDPDAPDRGFLDVVVEFPPMCSASTRPGRPNDDAHFVARRIEDALLDSAA 60
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD-GKIVM 191
I+ ++L++ G AW + LD+YCLD DG++ DA L++A+AA + ++P V +DD GKI
Sbjct: 61 IDKRKLTIKEGLWAWKICLDVYCLDHDGSMLDAGLMAALAALRDAKVPHVIVDDRGKITY 120
Query: 192 LPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVL 251
+ E+S V K+ + P ++T L++ +++ DP +EEE + + VTV +
Sbjct: 121 GGRKTDTESSNNTAVEG---KIEVAAAPVAVTTALYRKHLIVDPDAEEEQLADATVTVTM 177
Query: 252 DSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
D + +V ++KPGG A + + C+A R ++ + ++ A +
Sbjct: 178 DGAT-VVGVHKPGGTAEASETDLMHCVAACRLNLEARAKAIDAAFA 222
>gi|332157778|ref|YP_004423057.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2]
gi|331033241|gb|AEC51053.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2]
Length = 274
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 143/271 (52%), Gaps = 18/271 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D R R +I +G + A+GSAL KIG+T +L IK + P ++P+ G
Sbjct: 19 LKEGKRIDDRGFEDYRPISIEVGIIEKAEGSALVKIGNTQVLVGIKTTLGEPFPDTPNMG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P+ SP PG P E A +A+ + I S +NL+++ +V GK +V++
Sbjct: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESRALNLEKMVIVPGKIVRVVFI 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD--GKIVMLPEEQKEENSEKEPVNKE 209
D++ LD DG L DA ++A+AA N ++P V ++ G++ +L EKEP+ E
Sbjct: 139 DVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVEVL--------EEKEPLPVE 190
Query: 210 KRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
K IP +T N ++ DP+ +EE +ME +T+ D + + ++ K G
Sbjct: 191 K-------IPVPVTFAKIGNILVVDPSLDEELVMEGRLTITTDETGHISAVQKSEGGAFK 243
Query: 270 YTSAVQDCIALTRQRVKELHQILEEAISGME 300
V + + ++ +E+ +++ EA+ G E
Sbjct: 244 L-EEVMYAVDVAFKKAEEIRKMIIEAVKGTE 273
>gi|312372348|gb|EFR20329.1| hypothetical protein AND_20269 [Anopheles darlingi]
Length = 243
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 87/140 (62%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTML 73
M++ F+ L P++Y++ +L +IRPD R L R T S G + SADGSA+AKIG+TT++
Sbjct: 33 MDIKTFKLLHPVKYYKDYLENNIRPDGRELEELRPTAFSFGVIQSADGSAIAKIGNTTVV 92
Query: 74 AAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMI 133
IK E+ P P++G + + + P+ SP RPG P+E A V ++ L+D S + I
Sbjct: 93 CGIKAELAAPKAVEPNQGYLIPNVEISPVSSPSYRPGPPSEEAQVYSQSLADVFSKARCI 152
Query: 134 NLKELSLVGGKAAWMVYLDI 153
+L +L + GK W++Y D+
Sbjct: 153 DLAQLCVEPGKLVWVLYCDL 172
>gi|356539154|ref|XP_003538065.1| PREDICTED: exosome complex component rrp45-like [Glycine max]
Length = 438
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 144/276 (52%), Gaps = 20/276 (7%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ E L +R D R S R T+ + A DGSA +G T ++ + +++ P
Sbjct: 17 KFIETALLSDLRLDGRRPSDYRKLTVKL---AKQDGSAEVHLGQTHVMTFVTAQLVRPYR 73
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P+EG +SI P+ P PGRP++AA + + + + S I+ + L ++ GK
Sbjct: 74 DRPNEGSLSIFTEFSPMADPSFDPGRPSDAAVELGRVVDRGLRESRAIDTESLCVLSGKL 133
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL--DDGK-IVMLPEEQKEENSE 202
W + +DI+ LD G L DAA ++A+A+ + P SL +DG+ +V+ P E E
Sbjct: 134 VWAIRVDIHILDNAGNLVDAANIAALASLLTFRRPECSLAGEDGQDVVVHPPE------E 187
Query: 203 KEPVNKEKRKLTLGGIPFSLT--CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
++P+ L + +P ++T ++N ++ DPT EE +M +T L+S+ + ++
Sbjct: 188 RDPI-----PLIIHHLPIAVTFGFFSNENLLVIDPTHHEECVMTGRMTATLNSNGDVCAI 242
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
KPGG +++ S + C+ L + ++ + +A+
Sbjct: 243 QKPGGESVSH-SVIMHCLKLAHVKATDITTKIRDAV 277
>gi|349603366|gb|AEP99224.1| Exosome complex exonuclease RRP43-like protein, partial [Equus
caballus]
Length = 197
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 112/203 (55%), Gaps = 14/203 (6%)
Query: 99 MPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDA 158
+PP+CS R G P E A V ++ ++D I +S +I ++L + GK AW++Y D+ CLD
Sbjct: 6 LPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLAWVLYCDLICLDY 65
Query: 159 DGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGI 218
DG + DA + +AA N+Q+P V++ EE + E K+K L +
Sbjct: 66 DGNILDACTFALLAALKNVQLPEVTI------------SEETALAEVNLKKKSFLNIRTH 113
Query: 219 PFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDC 277
P + + + ++ DPT EEE + +TVV+D +L L+KPGG+ L + +QDC
Sbjct: 114 PVATSFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPGGSGLT-GAKLQDC 172
Query: 278 IALTRQRVKELHQILEEAISGME 300
++ R KE+ ++++E + M+
Sbjct: 173 MSRAVTRHKEVKKLMDEVVKSMK 195
>gi|164657360|ref|XP_001729806.1| hypothetical protein MGL_2792 [Malassezia globosa CBS 7966]
gi|159103700|gb|EDP42592.1| hypothetical protein MGL_2792 [Malassezia globosa CBS 7966]
Length = 313
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 165/315 (52%), Gaps = 43/315 (13%)
Query: 11 SSEME--------VDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGS 62
SS+ME V F++L P+ Y ERHL E IR D R+L + R+ +++ G ++ GS
Sbjct: 9 SSDMEKIDVASAPVTIFKKLHPVEYLERHLKERIREDGRTLDQLRSVSVATGTLSQPFGS 68
Query: 63 ALAKIGSTTML-AAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAK 121
AL ++G T++ A++ + P+LE P+EG + + +CSPL G P E V+
Sbjct: 69 ALVRLGEGTLVTASVTARIAHPTLERPNEGFLIPSVDLSSLCSPLYNAGPPEEEGQVLTH 128
Query: 122 QLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPT 181
L +++SG++ L + G A W +Y+D+ C+ A+G++ DAA L+ VAA + Q+P
Sbjct: 129 NLQMFLNNSGILPRSALCIEKGLAVWAIYVDVVCVSAEGSVLDAAALATVAALHDCQLPR 188
Query: 182 VS--LDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKN-YILADPTSE 238
+ ++ + + P+ K +L L +P +T ++++ Y+LAD T+
Sbjct: 189 IDRFVNSSQAIFDPD--------------TKERLPLMNLPIFMTLGMYESTYVLADLTAF 234
Query: 239 EESIMETLVTV-VLDSSNQL---------VSLYKPGGAV-------LAYTSAVQDCIALT 281
EES+ + V ++D +N++ V K G L + ++ CI
Sbjct: 235 EESLCTGSIQVGLVDVNNEVNDPDIAKYDVFWLKVLGPCTTKHPQPLENEALIEWCIEKA 294
Query: 282 RQRVKELHQILEEAI 296
++R ++L +++++A+
Sbjct: 295 QKRAQKLRKLIKDAL 309
>gi|435852007|ref|YP_007313593.1| RNase PH-related exoribonuclease [Methanomethylovorans hollandica
DSM 15978]
gi|433662637|gb|AGB50063.1| RNase PH-related exoribonuclease [Methanomethylovorans hollandica
DSM 15978]
Length = 260
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 21/242 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D R+ R T+ + A+GSA IG T +L +K++V P +
Sbjct: 13 YIYNLMLKGKREDGRAFDEHRKITVQTNVIEKAEGSAKVCIGDTQVLVGVKLQVGAPFPD 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
SPDEG + + M P+ SP G P E A +A+ I SG I+LKEL + G+
Sbjct: 73 SPDEGVIITNLEMNPLASPDFEAGPPREGAIEMARVTDRGIRESGAIDLKELCITEGEEV 132
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W+V++D++ L+ DG L DA+ L A+AA +IP SE+E
Sbjct: 133 WIVFIDVHVLNDDGNLQDASCLGAIAALMTSKIP--------------------SEREG- 171
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
E K+ + IP +T + ++ DP EE++ ++ +T+ + + + ++ K G
Sbjct: 172 KGEDVKMPIRDIPIGVTLVDIGGELMVDPGLAEETVADSKLTIASNKNGSISAMQKTGEG 231
Query: 267 VL 268
+L
Sbjct: 232 ML 233
>gi|375082087|ref|ZP_09729157.1| exosome complex RNA-binding protein Rrp42 [Thermococcus litoralis
DSM 5473]
gi|374743300|gb|EHR79668.1| exosome complex RNA-binding protein Rrp42 [Thermococcus litoralis
DSM 5473]
Length = 269
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 134/268 (50%), Gaps = 18/268 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D R R TI + A+GSAL K+G+T +L IK++ P + P+ G
Sbjct: 16 LKEGKRIDGRGPEDLRPLTIETNVIEKAEGSALVKLGNTQVLVGIKVDFGEPFPDLPEMG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + P+ SP PG P E A +A+ + I S ++L +L +V GK ++++
Sbjct: 76 VMTTNVEFVPLASPTFEPGPPDERAIELARVVDRGIRESQAVDLSKLVIVPGKLVRVIFI 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD--GKIVMLPEEQKEENSEKEPVNKE 209
D++ LD DG L DA+ + A+AA + +IP V D+ G++ +L E E PV K
Sbjct: 136 DVHILDHDGNLLDASGIGAIAALLSTKIPKVEYDEESGEVKLLDE------YEPLPVTK- 188
Query: 210 KRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
+P ++ N ++ DP EEE +M+ +T+ D + + ++ K G
Sbjct: 189 --------VPIPVSFAKIGNALIVDPNFEEEQVMDGKLTITTDENGYISAVQKSEGGSFK 240
Query: 270 YTSAVQDCIALTRQRVKELHQILEEAIS 297
V + L ++ +E+ +++ E+I
Sbjct: 241 LEEVVY-AVDLAYKKAEEIRKVVLESIK 267
>gi|315229928|ref|YP_004070364.1| exosome complex exonuclease 2 [Thermococcus barophilus MP]
gi|315182956|gb|ADT83141.1| exosome complex exonuclease 2 [Thermococcus barophilus MP]
Length = 270
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 138/271 (50%), Gaps = 18/271 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D RSL R + + + A+GSA K+G+T +L IK+++ P + PD+G
Sbjct: 16 LKEKKRIDGRSLEDLRPLEVKVNVIEKAEGSAWVKLGNTQVLVGIKLDLGEPFPDLPDKG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P+ SP PG P E A +A+ + I S I+L++L ++ GK +V++
Sbjct: 76 VMTTNVELVPLASPTFEPGPPDERAIELARVVDRGIRESQAIDLEKLVIIPGKLVRVVFI 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD--GKIVMLPEEQKEENSEKEPVNKE 209
D++ LD DG L DA + A+AA + ++P + ++ G+++ML E E PV K
Sbjct: 136 DVHVLDHDGNLVDATGIGAIAALLSTKMPKIEYNEETGEVMMLDE------YEPLPVTK- 188
Query: 210 KRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
IP ++ I+ DP EEE +M+ +T+ D + + ++ K G
Sbjct: 189 --------IPIPVSFAKIGGTIVVDPNLEEEHVMDGKLTITTDENGYISAVQKSEGGSFK 240
Query: 270 YTSAVQDCIALTRQRVKELHQILEEAISGME 300
V + + ++ +E+ + + EA+ E
Sbjct: 241 L-EEVMYAVDVAFKKAQEIREKILEAVGKKE 270
>gi|332796516|ref|YP_004458016.1| 3' exoribonuclease [Acidianus hospitalis W1]
gi|332694251|gb|AEE93718.1| 3' exoribonuclease [Acidianus hospitalis W1]
Length = 276
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 137/266 (51%), Gaps = 14/266 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L IR D R + R +I++ ADGSAL K+G TT+LA +K+E P ++P++G
Sbjct: 23 LDRGIRADGRKFNEYRPLSITLSYAKKADGSALVKLGDTTVLAGVKVEPEEPFEDTPNQG 82
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ ++ + P+ PG P E A +++ + ++ S I+L +L + GK W V++
Sbjct: 83 NLVVNVELLPLAYETFEPGPPDENAIELSRVVDRSLRDSKSIDLSKLVIEPGKKIWTVWV 142
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
DIY LD G + DA L+AV+A + ++P V + +I ++ KEE EK P+N
Sbjct: 143 DIYVLDYGGNILDACTLAAVSALYDTRLPKVVKEGDEIKII----KEEKGEKLPMNFPVV 198
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
+++ I +++ DP +EE IM+ +++ ++V + K G T
Sbjct: 199 TVSVAKI---------GKHLVVDPDLDEEGIMDAKISLSYTPEGRIVGIQKTGIGTFTLT 249
Query: 272 SAVQDCIALTRQRVKELHQILEEAIS 297
+ + L R ++L + L++ I+
Sbjct: 250 E-IDNVETLARSVSQKLLEELKKQIN 274
>gi|390939120|ref|YP_006402858.1| 3' exoribonuclease [Desulfurococcus fermentans DSM 16532]
gi|390192227|gb|AFL67283.1| 3' exoribonuclease [Desulfurococcus fermentans DSM 16532]
Length = 286
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 132/259 (50%), Gaps = 16/259 (6%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L+ R + + + A GS+L K+G T ++A +K+E+ P + P EG + +
Sbjct: 28 RIDGRGLTDYRPIEVILNPITKASGSSLVKLGGTQVIAGVKLELEEPFPDRPGEGVLQVH 87
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
P+ SP PG P E A VA+ + ++ S + L L++ GK AW VY DIY +
Sbjct: 88 AEFVPLASPSFEPGPPDENAIEVARVIDRSLRESKAVKLDALAIEPGKIAWSVYTDIYLV 147
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G + D ++L+++ A + +I PE K EN K K L +
Sbjct: 148 DHQGNIIDTSMLASMLALATSRI-------------PELIKGENGYKVDHTKYVGPLPIN 194
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT---SA 273
+ ++T ++ + I+ DP EEE+++++ +T+ +D S ++ + K G + + +A
Sbjct: 195 TLVATVTMGIYNDVIIVDPLLEEEAVIDSFITIAIDESGRICGIQKRGMKGFSRSILDNA 254
Query: 274 VQDCIALTRQRVKELHQIL 292
V+ ++ R+ V + +IL
Sbjct: 255 VEIALSKGRELVDLMKKIL 273
>gi|145592135|ref|YP_001154137.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum arsenaticum
DSM 13514]
gi|145283903|gb|ABP51485.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum arsenaticum DSM
13514]
Length = 276
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 128/238 (53%), Gaps = 13/238 (5%)
Query: 28 FERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLES 87
+R A R D R+L + R I G V +ADGSA K+G T ++A +K+ + P ++
Sbjct: 20 IKRLAASKNRVDGRALDQTREIEIKTGVVKTADGSAEVKLGKTHVIAGVKVGLGQPFPDA 79
Query: 88 PDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAW 147
PDEG + + + P SP G P E+A +A+ + I G ++ K+L++ GGK A+
Sbjct: 80 PDEGVLVVSAEVLPHASPYTEVGPPDESAIELARVVDRGIRHCGYVDFKKLAVEGGK-AY 138
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVN 207
++++D+Y ++ DG L DAA L++VAA N Q+P V D+ V L + + K P+
Sbjct: 139 VLWVDLYVINDDGNLVDAANLASVAALKNTQLPAVVKDESGAVKL------DRNNKSPLP 192
Query: 208 KEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
E K +P +++ N + DP EEE ++ VT + S +++V+ K G
Sbjct: 193 LETSK-----VPVAVSVGKIANVLFLDPNFEEELSLDGRVTFTI-SEDRIVAAQKTLG 244
>gi|328862357|gb|EGG11458.1| hypothetical protein MELLADRAFT_70820 [Melampsora larici-populina
98AG31]
Length = 292
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 139/276 (50%), Gaps = 19/276 (6%)
Query: 12 SEMEVDAFRRLFPLRYFERHLAESIRPD--ARSLSRARNTTISMGAVASADGSALAKIGS 69
+E +++ ++RL P+ Y ++ + E+ R D S+ + R I+ ++++++GS+L IG+
Sbjct: 22 NEFDIENYKRLQPINYLKQMIKENKRSDLIRSSVRQIRLIKINNNSISTSNGSSLVSIGN 81
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T++L I+ EV P+ +P++G + + + +CS +P + E + + QL + S
Sbjct: 82 TSVLCGIRFEVSEPNFMNPNQGYIIPNIEIGSLCSSKFKPNQINEQSQTILTQLKMILKS 141
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD--DG 187
S +I L + K W++Y+D+ CL DG + DA+++S A + P V D
Sbjct: 142 SEIIEPSSLVIQPEKLVWVIYIDVICLSNDGNVLDASIISITQALQTAKRPQVEFDIETN 201
Query: 188 KIVMLPEEQKEENSEKEPVNKEKRKLTLGGI--PFSLTCILHKNYILADPTSEEESIMET 245
++++L +P E + L PF+ + I K L DPT EE +
Sbjct: 202 EVILL-----------DPNFFEPIPIPLNHTIHPFTFS-IFEKREWLVDPTLFEEDHSKG 249
Query: 246 LVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALT 281
VTVVLDS +L L G V + + DC+ +
Sbjct: 250 SVTVVLDSKKKLRYLL-VSGEVQQGSGVLNDCLQFS 284
>gi|289595859|ref|YP_003482555.1| 3' exoribonuclease [Aciduliprofundum boonei T469]
gi|289533646|gb|ADD07993.1| 3' exoribonuclease [Aciduliprofundum boonei T469]
Length = 270
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 121/245 (49%), Gaps = 21/245 (8%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
+Y + ++ R D R RN T++ G + A+GSAL +G+T +L +K+E TP
Sbjct: 17 KYIHKLASKGTRVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTPFP 76
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
++P+ G ++ + + P+ SP PG P E A +A+ + I I+L++L + G+
Sbjct: 77 DTPNMGILTTNAELAPLASPTFEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEGEK 136
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W+V++DI+ LD DG LFDAA A+AA +N +P D G+ LP +
Sbjct: 137 VWIVFIDIHVLDYDGNLFDAAGYGALAALTNATVPASRYDLGEDFKLPVQH--------- 187
Query: 206 VNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
P +T ++I+ADP +EESI +TV + ++ ++ K
Sbjct: 188 ------------YPVPVTFAKIGDWIVADPNLDEESIASARLTVATNEEGKINAMQKGLS 235
Query: 266 AVLAY 270
Y
Sbjct: 236 GTFTY 240
>gi|379003147|ref|YP_005258819.1| RNase PH-related exoribonuclease [Pyrobaculum oguniense TE7]
gi|375158600|gb|AFA38212.1| RNase PH-related exoribonuclease [Pyrobaculum oguniense TE7]
Length = 276
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 128/238 (53%), Gaps = 13/238 (5%)
Query: 28 FERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLES 87
+R A R D R+L + R I G V +ADGSA K+G T ++A +K+ + P ++
Sbjct: 20 IKRLAASKNRVDGRALDQTREIEIKTGVVKTADGSAEVKLGKTHVIAGVKVGLGQPFPDA 79
Query: 88 PDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAW 147
PDEG + + + P SP G P E+A +A+ + I G ++ K+L++ GGK A+
Sbjct: 80 PDEGVLVVSAEVLPHASPYTEVGPPDESAIELARVVDRGIRHCGYVDFKKLAVEGGK-AY 138
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVN 207
++++D+Y ++ DG L DAA L++VAA N Q+P V D+ V L + + K P+
Sbjct: 139 VLWVDLYIINDDGNLVDAANLASVAALKNTQLPAVVKDESGAVKL------DRNNKSPLP 192
Query: 208 KEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
E K +P +++ N + DP EEE ++ VT + S +++V+ K G
Sbjct: 193 LETSK-----VPVAVSVGKIANVLFLDPNFEEELSLDGRVTFTI-SEDRIVAAQKTLG 244
>gi|356497351|ref|XP_003517524.1| PREDICTED: exosome complex component rrp45-like [Glycine max]
Length = 350
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 142/276 (51%), Gaps = 20/276 (7%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ E L +R D R S R TI + A DGSA +G T ++ + +++ P
Sbjct: 17 KFIETALLSDLRVDGRRPSDYRKLTIKL---AKQDGSAEVHLGQTHVITFVTAQLVRPYR 73
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P+EG +SI P+ P PGRP +AA + + + + S I+ + L ++ GK
Sbjct: 74 DRPNEGSLSIFTEFSPMADPSFEPGRPTDAAVELGRVVDRGLRESRAIDTESLCVLSGKL 133
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL--DDGK-IVMLPEEQKEENSE 202
W + +DI+ LD G L DAA ++A+ + + P SL +DG+ +V+ P E E
Sbjct: 134 VWAIRVDIHILDNAGNLVDAANIAALVSLLTFRRPECSLTGEDGQDVVVHPPE------E 187
Query: 203 KEPVNKEKRKLTLGGIPFSLTCIL--HKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
++P+ L + +P ++T ++N ++ DPT EE +M +T L+S+ + ++
Sbjct: 188 RDPI-----PLIIHHLPIAVTFGFFSNENLLVIDPTHHEECVMTGRMTATLNSNGDVCAI 242
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
KPGG ++ S + C+ L + ++ +++A+
Sbjct: 243 QKPGGESVSQ-SVIMHCLKLAHVKATDITTKIKDAV 277
>gi|298674552|ref|YP_003726302.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303]
gi|298287540|gb|ADI73506.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303]
Length = 260
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 123/264 (46%), Gaps = 22/264 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D R+ R+ +I + +A+GSA G T ++ +K++V P +
Sbjct: 13 YVYHLMLKEKREDNRAFDEIRDISIETDIIGNAEGSAKVYWGDTQLIVGVKLQVGEPFPD 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+PD+G + + PI SP G P E A +A+ + I SG I+L +L + G+
Sbjct: 73 TPDKGIIITSLELNPIASPDFEAGPPKEDAIEIARVVDRGIRESGAIDLNKLCITEGEEV 132
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W V++D+ L+ DG + DAA + A+AA IP S G+ +M+P
Sbjct: 133 WTVFIDVNVLNDDGNIMDAASIGAIAALMTTNIPAESEGYGEDMMMP------------- 179
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
+ IP ++ + ++ DPT EES+ +T +TVV + + ++ K G
Sbjct: 180 --------VRDIPVGISLVDISGELMVDPTYNEESVCDTKITVVSNQDGSISAMQKSGTG 231
Query: 267 VLAYTSAVQDCIALTRQRVKELHQ 290
L +Q + R R E+ +
Sbjct: 232 SLTEEKVLQ-AANIARTRASEIRE 254
>gi|313236007|emb|CBY11334.1| unnamed protein product [Oikopleura dioica]
Length = 271
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 123/247 (49%), Gaps = 16/247 (6%)
Query: 24 PLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTP 83
P + + L +RPD RSL R ++ +AD SA+ ++G+T ++ I E + P
Sbjct: 16 PEDHLKSFLQRDVRPDGRSLDELRPLVLAKNVAPTADSSAMIRLGNTKVICGITAETIKP 75
Query: 84 SLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGG 143
+ +P +G S++F +CSP + G P E A ++ L + N +L +
Sbjct: 76 AAATPKDGSFSVNFEFSSVCSPNAKAGPPNEVAQTMSIFLDGILKQVFQTN--QLCIEPD 133
Query: 144 KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEK 203
AW +++D+YCL+ DG + DAA++S +++ +L++P +++D E + K
Sbjct: 134 LLAWTLFIDVYCLEDDGNVTDAAMMSVISSLRDLKLPEITID-------------EETAK 180
Query: 204 EPVNKEKRK-LTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
VN EK+ + L P S T +L DPT+ E + + +TVV L+ +
Sbjct: 181 PLVNLEKQSPVDLKMFPVSTTYGEFSGILLLDPTARETELGSSPITVVCSEKGALLCFNR 240
Query: 263 PGGAVLA 269
GG+ L+
Sbjct: 241 SGGSPLS 247
>gi|254168306|ref|ZP_04875152.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
gi|197622815|gb|EDY35384.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
Length = 270
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 121/245 (49%), Gaps = 21/245 (8%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
+Y + ++ R D R RN T++ G + A+GSAL +G+T +L +K+E TP
Sbjct: 17 KYIHKLASKGTRVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTPFP 76
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
++P+ G ++ + + P+ SP PG P E A +A+ + I I+L++L + G+
Sbjct: 77 DTPNMGILTTNAELAPLASPTFEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEGEK 136
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W+V++DI+ LD DG LFDAA A+AA +N +P D G+ LP +
Sbjct: 137 VWIVFIDIHVLDYDGNLFDAAGYGALAALTNAIVPASRYDLGEDFKLPVQH--------- 187
Query: 206 VNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
P +T ++I+ADP +EESI +TV + ++ ++ K
Sbjct: 188 ------------YPVPVTFAKIGDWIVADPNLDEESIASARLTVATNEEGKINAMQKGLS 235
Query: 266 AVLAY 270
Y
Sbjct: 236 GTFTY 240
>gi|156363855|ref|XP_001626255.1| predicted protein [Nematostella vectensis]
gi|156213125|gb|EDO34155.1| predicted protein [Nematostella vectensis]
Length = 225
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 125/228 (54%), Gaps = 18/228 (7%)
Query: 73 LAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGM 132
L K E P+ + P++G + + +PP+CSP RPG P+E A V++ + + I+ M
Sbjct: 12 LCFFKKEFAEPAADVPNKGFIVPNVDLPPLCSPSFRPGPPSEHAQVLSTFIDNLITKRSM 71
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVML 192
EL W++Y+D+ CLD DG + DAA+++ +AA N ++ TV++++
Sbjct: 72 ----ELLQHAKYLVWVLYIDLMCLDYDGNVADAAVIAMLAALQNTRLHTVTINEETETPE 127
Query: 193 PEEQKEENSEKEPVNKEKRKLTLGGIPFSLTC-ILHKNYILADPTSEEESIMETLVTVVL 251
P E K+ + L L +P ++T I ++I DPT EEE + V+VV+
Sbjct: 128 PSENKDIH------------LKLKSMPVAVTFGIFDDDHIYCDPTDEEERLASGKVSVVM 175
Query: 252 DSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
++N++V+++KPGG L +Q+C +T RV E+ Q++ A + +
Sbjct: 176 TTNNKVVAVHKPGGPPLT-QDKLQECFDVTTGRVLEVQQLIHTACTNV 222
>gi|313236011|emb|CBY11338.1| unnamed protein product [Oikopleura dioica]
Length = 271
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 123/247 (49%), Gaps = 16/247 (6%)
Query: 24 PLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTP 83
P + + L +RPD RSL R ++ +AD SA+ ++G+T ++ I E + P
Sbjct: 16 PEDHLKSFLQRDVRPDGRSLDELRPLVLAKNVAPTADSSAMIRLGNTKVICGITAETIKP 75
Query: 84 SLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGG 143
+ +P +G S++F +CSP + G P E A ++ L + + +L +
Sbjct: 76 AAATPKDGSFSVNFEFSSVCSPNAKAGPPNEVAQTMSIFLDGILKQ--VFETNQLCIEPD 133
Query: 144 KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEK 203
AW +++D+YCL+ DG + DAA++S +++ +L++P +++D E + K
Sbjct: 134 LLAWTLFIDVYCLEDDGNVTDAAMMSVISSLRDLKLPEITID-------------EETAK 180
Query: 204 EPVNKEKRK-LTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
VN EK+ + L P S T +L DPT+ E + + +TVV L+ +
Sbjct: 181 PVVNLEKQSPVDLKMFPVSTTYGEFSGILLLDPTARETELGSSPITVVCSEKGALLCFNR 240
Query: 263 PGGAVLA 269
GG+ L+
Sbjct: 241 SGGSPLS 247
>gi|218884634|ref|YP_002429016.1| exosome complex RNA-binding protein Rrp42 [Desulfurococcus
kamchatkensis 1221n]
gi|218766250|gb|ACL11649.1| Probable exosome complex exonuclease 2 [Desulfurococcus
kamchatkensis 1221n]
Length = 286
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 127/251 (50%), Gaps = 18/251 (7%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L+ R + + + A GS+L K+G T ++A +K+E+ P + P EG + +
Sbjct: 28 RIDGRGLTDYRPIEVILNPITKASGSSLVKLGGTQVIAGVKLELEEPFPDRPGEGVLQVH 87
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
P+ SP PG P E A VA+ + ++ S + L L++ GK W VY DIY +
Sbjct: 88 AEFVPLASPSFEPGPPDENAIEVARVIDRSLRESKAVKLDALAIEPGKIVWSVYTDIYLV 147
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G + D +L+++ A + +I PE K EN K K L +
Sbjct: 148 DHQGNIIDTGMLASMLALATSRI-------------PELIKGENGYKVDHTKYVGPLPIN 194
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQD 276
+ ++T ++ + I+ DP EEE+++++ +T+ +D S ++ + K G + ++ +V D
Sbjct: 195 TLVATVTMGIYNDVIIVDPLLEEEAVIDSFITIAIDESGRICGIQKRG--MKGFSRSVLD 252
Query: 277 C---IALTRQR 284
IAL++ R
Sbjct: 253 NTIEIALSKGR 263
>gi|321250323|ref|XP_003191768.1| ribosomal RNA-processing protein 43 [Cryptococcus gattii WM276]
gi|317458235|gb|ADV19981.1| Ribosomal RNA-processing protein 43, putative [Cryptococcus gattii
WM276]
Length = 303
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 102/184 (55%), Gaps = 16/184 (8%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRA----------------RNTTISMGAVASADGS 62
F+RL P Y R L+ RPD R + + R +I+ G++++A GS
Sbjct: 29 FKRLHPASYLSRFLSSGYRPDGRPILSSSSSQPTASASAADDIWRQVSINTGSISTAHGS 88
Query: 63 ALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQ 122
AL ++G TTM+ +K E+ P E+P EG V + +P + SP +PG P + A +
Sbjct: 89 ALVRMGDTTMVCGVKAEIGEPDTETPGEGFVVPNIDLPALSSPRFKPGPPGDEAQTYSNW 148
Query: 123 LSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTV 182
L++ + SS I L L + GKAAW++Y+D+ C++ DG FDAA+L+ +AA N ++P
Sbjct: 149 LNELLVSSKTIPLSSLLIAPGKAAWVLYIDVVCINYDGNAFDAAVLAVMAALRNTRLPKA 208
Query: 183 SLDD 186
DD
Sbjct: 209 VYDD 212
>gi|288869793|ref|ZP_06409499.1| putative exosome complex exonuclease 2 [Methanobrevibacter smithii
DSM 2374]
gi|288860271|gb|EFC92569.1| putative exosome complex exonuclease 2 [Methanobrevibacter smithii
DSM 2374]
Length = 265
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 128/256 (50%), Gaps = 15/256 (5%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L R+ +I G ++ A+GSA KIG T ++ IK ++ P ++PD G + +
Sbjct: 25 REDGRELDEYRDISIETGVISKAEGSARVKIGDTQVIVGIKPQIGAPFPDTPDLGVLMTN 84
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
M P+ P PG P+E + +A+ + I S +++L +L + GK WM+++D++ +
Sbjct: 85 CEMLPMADPTFEPGPPSEDSIELARVVDRGIRESELVDLDKLCVEEGKHVWMLFIDLHII 144
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G LFDA L+ +AA + ++P+ S+ D ++V+ EN+ P+N E T
Sbjct: 145 DNCGNLFDACELAVMAALKSTKLPSASIADDEVVL-----DHENTIDLPINNEVAMCTFV 199
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQD 276
I + ++ DPT EE + + V + + ++ K GG + +
Sbjct: 200 KI---------GDKLILDPTLNEEKVASARLNVGVTKDGNICAMQK-GGILPLTKEDIFY 249
Query: 277 CIALTRQRVKELHQIL 292
C+ + KEL + L
Sbjct: 250 CVDKAVSKTKELVEYL 265
>gi|390960832|ref|YP_006424666.1| exosome complex RNA-binding protein Rrp42 [Thermococcus sp. CL1]
gi|390519140|gb|AFL94872.1| exosome complex RNA-binding protein Rrp42 [Thermococcus sp. CL1]
Length = 269
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 118/235 (50%), Gaps = 13/235 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D R L R+ I + + A+GSA K+G+T +L IK+++ P + PD G
Sbjct: 16 LKEGKRVDGRGLEDYRDLEIRVNVIEKAEGSAWVKLGNTQVLVGIKVDMGEPFPDLPDRG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P+ SP PG P E A +A+ + I SG + L++L +V GK +V++
Sbjct: 76 VITTNVELVPLASPSFEPGPPDENAIELARVVDRGIRESGAVELEKLVIVPGKLVRVVFI 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ LD DG L DA + A+AA + +IP V + EE E E V E
Sbjct: 136 DVHVLDHDGNLLDATGIGAIAALLSTKIPKVVYN------------EETDEVE-VLDEYE 182
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
L + +P +T +L DP +EE +M+ + + D + + S+ K G
Sbjct: 183 PLPVRRVPIPVTFAKIGPSLLIDPNLDEERVMDGRIIITTDENGMISSVQKSEGG 237
>gi|281348318|gb|EFB23902.1| hypothetical protein PANDA_021543 [Ailuropoda melanoleuca]
Length = 196
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 111/204 (54%), Gaps = 17/204 (8%)
Query: 99 MPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDA 158
+PP+CS R G P E A V ++ ++D I +S +I ++L + GK +W++Y DI CLD
Sbjct: 6 LPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLSWVLYCDIICLDY 65
Query: 159 DGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGI 218
DG + DA + +AA N+Q+P V+++ EE E K+K L +
Sbjct: 66 DGNILDACTFALLAALKNVQLPEVTIN------------EETGLAEVHLKKKSYLNIRTH 113
Query: 219 PFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSA-VQD 276
P + + + ++ DPT EEE + +TVV+D +L L+KPG + T A +QD
Sbjct: 114 PVATSFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPG---IGLTGAKLQD 170
Query: 277 CIALTRQRVKELHQILEEAISGME 300
C++ R KE+ ++++E I M+
Sbjct: 171 CMSRAVTRHKEVKKLMDEVIKSMK 194
>gi|410930716|ref|XP_003978744.1| PREDICTED: exosome complex component RRP45-like [Takifugu rubripes]
Length = 386
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 136/272 (50%), Gaps = 17/272 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + +AE R D R R +S GA G ++G T ++A + E++ P
Sbjct: 13 FLLKAIAEKKRLDGRQTYDYRRIKVSFGA---DYGCCFVELGETRVMAQVSCELVAPKES 69
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P+EG + + + P+ SP GR +E + + +QL + +S I+ + L +V G+
Sbjct: 70 RPNEGILFFNIELSPMASPAFEAGRQSELSVKLNRQLERCLRNSKCIDTESLCVVSGEKV 129
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W + +D++ L+ DG L DAA ++A+ A S+ + P VS +I + E E++P+
Sbjct: 130 WQIRVDVHLLNHDGNLMDAASIAAITALSHFRRPDVSSVGEEITVFSPE------ERDPI 183
Query: 207 NKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
L + +P S++ + Y+L DP EE +M+ L+ + ++ ++ S+ G
Sbjct: 184 -----PLCIYHMPISVSFSFFQQGTYLLVDPCEREERVMDGLLMIAMNKHREICSIQSSG 238
Query: 265 GAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
G +L V C + +V E+++++ +A+
Sbjct: 239 GIML-LKEQVMRCSKIASVKVSEINELISKAL 269
>gi|337283875|ref|YP_004623349.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus yayanosii
CH1]
gi|334899809|gb|AEH24077.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus yayanosii
CH1]
Length = 268
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 139/269 (51%), Gaps = 18/269 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D R R I +G + A+GSAL K+G+T +L IK+++ P ++P+ G
Sbjct: 16 LKEGKRIDDRGFEDYRPIEIQVGVIEKAEGSALVKLGNTQVLVGIKLDLGEPFPDTPNMG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P+ SP PG P E A +A+ + I S ++L++L +V GK +V++
Sbjct: 76 VMTTNVELVPLASPTFEPGPPDERAIELARVVDRGIRESKALDLEKLVIVPGKLVRVVFI 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD--GKIVMLPEEQKEENSEKEPVNKE 209
D++ LD DG L DA ++A+AA N ++P V D+ G++ +L E E PV K
Sbjct: 136 DVHVLDHDGNLMDAIGIAAIAALLNAKMPKVEYDEEKGEVTILDE------WEPLPVQK- 188
Query: 210 KRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
IP +T ++ DP EEE +M+ +T+ D + + ++ K G
Sbjct: 189 --------IPIPVTFAKIGGTLVVDPNLEEEQVMDGKLTITTDETGHISAVQKSEGGAFK 240
Query: 270 YTSAVQDCIALTRQRVKELHQILEEAISG 298
V + + ++ +E+ +++ EA+ G
Sbjct: 241 L-EEVMYAVEVAFKKAEEIRKLILEAVQG 268
>gi|385806381|ref|YP_005842779.1| exosome complex RNA-binding protein Rrp42 [Fervidicoccus fontis
Kam940]
gi|383796244|gb|AFH43327.1| exosome complex RNA-binding protein Rrp42 [Fervidicoccus fontis
Kam940]
Length = 274
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 115/228 (50%), Gaps = 12/228 (5%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R+L R TI + +DGSAL +G T +L +K+E P ++P+EG + ++
Sbjct: 28 RIDGRALDEVRKITIVPNYIEKSDGSALVYLGDTLVLVGVKVEPGAPYPDNPNEGVLMVN 87
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
P+ SP PG P E A +A+ + + S I L EL+LV G+ +V+ DIY L
Sbjct: 88 AEFVPLASPAFEPGPPDENAYELARIIDRSYRESKAIGLGELALVPGQKVLVVWNDIYVL 147
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
+ G L DA+ ++++ A N +IP DG + K+EN K +N +K+ +T
Sbjct: 148 NHSGNLIDASAIASLVALMNTRIPVYEEADGGNFV-----KKENEYKGNLNVKKKIIT-- 200
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
T NY LADPT EEE + + ++V + + K G
Sbjct: 201 -----ATIAKIGNYYLADPTDEEEYVSDARLSVSFTEDGIIAGMQKMG 243
>gi|295322022|pdb|3M85|G Chain G, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322023|pdb|3M85|H Chain H, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322024|pdb|3M85|I Chain I, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
Length = 259
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 133/268 (49%), Gaps = 27/268 (10%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y L ++ R D R R I + A+GSAL K+G T ++ +KM+ P+ +
Sbjct: 13 YVLSKLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEPAPD 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+PD G + ++ + P+ SP PG P E + +A+ + I S ++L +L + G+
Sbjct: 73 TPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKV 132
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W+V++DI+ LD DG L DA+ L+A+AA N ++P D G+ +LP
Sbjct: 133 WIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGEDYLLP------------- 179
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
+ +P S+T ++ N L DP+ EE S+ +T +T+ D + +V++ K GG
Sbjct: 180 --------VRDLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITTDKDDNVVAMQKSGGY 231
Query: 267 VL------AYTSAVQDCIALTRQRVKEL 288
+L +C R++ KE+
Sbjct: 232 LLDEKLFDELLDVSINCARKLREKFKEI 259
>gi|20090627|ref|NP_616702.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina
acetivorans C2A]
gi|29336812|sp|Q8TGX5.1|ECX2_METAC RecName: Full=Probable exosome complex exonuclease 2
gi|19915669|gb|AAM05182.1| tRNA nucleotidyltransferase [Methanosarcina acetivorans C2A]
Length = 266
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 134/274 (48%), Gaps = 22/274 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D R R+ + + A+GSA +G+T +L +K++ TP +
Sbjct: 15 YIYNLMIKGKRQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQVLVGVKLQTGTPFPD 74
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
S DEG + + + PI SP PG P E A +A+ + I SG I++K+L + G++
Sbjct: 75 SQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRGIRESGAIDIKKLCITVGESV 134
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W+V++D++ L+ DG + DA+ L+A+AA M+P EQ+
Sbjct: 135 WIVFIDVHVLNDDGNIIDASCLAAIAALMT-------------TMVPNEQQGLG------ 175
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
E L + +P +T + ++ DP+ +EE++ ET +T+V S + + K G +
Sbjct: 176 --EDVPLAMKEMPVGITIAKIGSKLMVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMGIS 233
Query: 267 VLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L + + + I L ++ EL + E ++ E
Sbjct: 234 PLT-EAELFEAIDLALEKAAELRGLYLEGLAKSE 266
>gi|374633081|ref|ZP_09705448.1| RNase PH-related exoribonuclease [Metallosphaera yellowstonensis
MK1]
gi|373524565|gb|EHP69442.1| RNase PH-related exoribonuclease [Metallosphaera yellowstonensis
MK1]
Length = 281
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 131/269 (48%), Gaps = 15/269 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + R D R + R +I++G ADGSAL ++G TT+LA +K+E P ++P +G
Sbjct: 23 LEKGTRTDGRKFTDYRPISITLGYAKKADGSALVRLGDTTVLAGVKIEEDEPYPDTPAQG 82
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ ++ + P+ PG P E A +++ + ++ S I+L L + GK W V++
Sbjct: 83 NLVVNAELLPLAYETFEPGPPDENAIELSRVVDRSLRDSKSIDLSSLVIEEGKRVWTVWV 142
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
DI LD G + DA L+AVAA + ++P V +DG + + EE+ K PV
Sbjct: 143 DISVLDYGGNVLDACTLAAVAALYDTKLPKVVKEDGSVKINKEEKVVSFPLKYPV----- 197
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAY- 270
++T +++ DP EEE IM+ ++ + +V + K G +
Sbjct: 198 --------VTVTVAKIGKFLVIDPDLEEEGIMDAKISFSYINDGHIVGIQKSGEGSFSSQ 249
Query: 271 -TSAVQDCIALTRQRVKELHQILEEAISG 298
A + +LT QR+ E + +SG
Sbjct: 250 EVEAAESMASLTSQRLFEELKKYVSIVSG 278
>gi|229582055|ref|YP_002840454.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
Y.N.15.51]
gi|259645406|sp|C3NHC2.1|ECX2_SULIN RecName: Full=Probable exosome complex exonuclease 2
gi|228012771|gb|ACP48532.1| 3' exoribonuclease [Sulfolobus islandicus Y.N.15.51]
Length = 275
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 23/233 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L+ R +I++ ADGSAL K+G+T +LA K+E+ P ++P++G + ++
Sbjct: 28 RQDGRKLTDYRPLSITLNYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVN 87
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ PG P E A +A+ + ++ S ++L +L + GK+ W V+LD+Y L
Sbjct: 88 VELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVL 147
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G + DA L++VAA N ++ V E++S VNK + +G
Sbjct: 148 DYGGNVLDACTLASVAALYNTKVYKV---------------EQDSNGFRVNKNE---VVG 189
Query: 217 GIPFS---LTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+P + +T + K Y++ DP +EESIM+T V+ ++V + K G
Sbjct: 190 KLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSG 242
>gi|227827678|ref|YP_002829458.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
M.14.25]
gi|229584882|ref|YP_002843384.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
M.16.27]
gi|259645402|sp|C3N5R4.1|ECX2_SULIA RecName: Full=Probable exosome complex exonuclease 2
gi|259645405|sp|C3MVG5.1|ECX2_SULIM RecName: Full=Probable exosome complex exonuclease 2
gi|227459474|gb|ACP38160.1| 3' exoribonuclease [Sulfolobus islandicus M.14.25]
gi|228019932|gb|ACP55339.1| 3' exoribonuclease [Sulfolobus islandicus M.16.27]
Length = 275
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 23/233 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L+ R +I++ ADGSAL K+G+T +LA K+E+ P ++P++G + ++
Sbjct: 28 RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVN 87
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ PG P E A +A+ + ++ S ++L +L + GK+ W V+LD+Y L
Sbjct: 88 VELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVL 147
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G + DA L++VAA N ++ V E++S VNK + +G
Sbjct: 148 DYGGNVLDACTLASVAALHNTKVYKV---------------EQDSNGFRVNKNE---VVG 189
Query: 217 GIPFS---LTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+P + +T + K Y++ DP +EESIM+T V+ ++V + K G
Sbjct: 190 KLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSG 242
>gi|254168333|ref|ZP_04875178.1| 3' exoribonuclease family, domain 1 protein [Aciduliprofundum
boonei T469]
gi|197622614|gb|EDY35184.1| 3' exoribonuclease family, domain 1 protein [Aciduliprofundum
boonei T469]
Length = 226
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 21/231 (9%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
+Y + ++ R D R RN T++ G + A+GSAL +G+T +L +K+E TP
Sbjct: 17 KYIHKLASKGTRVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTPFP 76
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
++P+ G ++ + + P+ SP PG P E A +A+ + I I+L++L + G+
Sbjct: 77 DTPNMGILTTNAELAPLASPTFEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEGEK 136
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W+V++DI+ LD DG LFDAA A+AA +N +P D G+ LP +
Sbjct: 137 VWIVFIDIHVLDYDGNLFDAAGYGALAALTNATVPASRYDLGEDFKLPVQH--------- 187
Query: 206 VNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
P +T ++I+ADP +EESI +TV + +
Sbjct: 188 ------------YPVPVTFAKIGDWIVADPNLDEESIASARLTVATNEEEK 226
>gi|385773350|ref|YP_005645916.1| 3' exoribonuclease [Sulfolobus islandicus HVE10/4]
gi|385775988|ref|YP_005648556.1| 3' exoribonuclease [Sulfolobus islandicus REY15A]
gi|323474736|gb|ADX85342.1| 3' exoribonuclease [Sulfolobus islandicus REY15A]
gi|323477464|gb|ADX82702.1| 3' exoribonuclease [Sulfolobus islandicus HVE10/4]
Length = 275
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 23/233 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L+ R +I++ ADGSAL K+G+T +LA K+E+ P ++P++G + ++
Sbjct: 28 RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVN 87
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ PG P E A +A+ + ++ S ++L +L + GK+ W V+LD+Y L
Sbjct: 88 VELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVL 147
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G + DA L++VAA N ++ V E++S VNK + +G
Sbjct: 148 DYGGNVLDACTLASVAALYNTKVYKV---------------EQDSNGFRVNKNE---VVG 189
Query: 217 GIPFS---LTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+P + +T + K Y++ DP +EESIM+T V+ ++V + K G
Sbjct: 190 KLPLNHPVVTVSIAKIDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSG 242
>gi|227830375|ref|YP_002832155.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
L.S.2.15]
gi|229579193|ref|YP_002837591.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
Y.G.57.14]
gi|238619849|ref|YP_002914675.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
M.16.4]
gi|284997881|ref|YP_003419648.1| 3'exoribonuclease [Sulfolobus islandicus L.D.8.5]
gi|259645403|sp|C4KHE3.1|ECX2_SULIK RecName: Full=Probable exosome complex exonuclease 2
gi|259645404|sp|C3MQ47.1|ECX2_SULIL RecName: Full=Probable exosome complex exonuclease 2
gi|259645407|sp|C3NED0.1|ECX2_SULIY RecName: Full=Probable exosome complex exonuclease 2
gi|227456823|gb|ACP35510.1| 3' exoribonuclease [Sulfolobus islandicus L.S.2.15]
gi|228009907|gb|ACP45669.1| 3' exoribonuclease [Sulfolobus islandicus Y.G.57.14]
gi|238380919|gb|ACR42007.1| 3' exoribonuclease [Sulfolobus islandicus M.16.4]
gi|284445776|gb|ADB87278.1| 3'exoribonuclease [Sulfolobus islandicus L.D.8.5]
Length = 275
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 23/233 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L+ R +I++ ADGSAL K+G+T +LA K+E+ P ++P++G + ++
Sbjct: 28 RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVN 87
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ PG P E A +A+ + ++ S ++L +L + GK+ W V+LD+Y L
Sbjct: 88 VELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVL 147
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G + DA L++VAA N ++ V E++S VNK + +G
Sbjct: 148 DYGGNVLDACTLASVAALYNTKVYKV---------------EQDSNGFRVNKNE---VVG 189
Query: 217 GIPFS---LTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+P + +T + K Y++ DP +EESIM+T V+ ++V + K G
Sbjct: 190 KLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSG 242
>gi|11498105|ref|NP_069330.1| exosome complex RNA-binding protein Rrp42 [Archaeoglobus fulgidus
DSM 4304]
gi|29336575|sp|O29756.1|ECX2_ARCFU RecName: Full=Probable exosome complex exonuclease 2
gi|83754328|pdb|2BA0|I Chain I, Archaeal Exosome Core
gi|83754329|pdb|2BA0|H Chain H, Archaeal Exosome Core
gi|83754330|pdb|2BA0|G Chain G, Archaeal Exosome Core
gi|83754337|pdb|2BA1|G Chain G, Archaeal Exosome Core
gi|83754338|pdb|2BA1|H Chain H, Archaeal Exosome Core
gi|83754339|pdb|2BA1|I Chain I, Archaeal Exosome Core
gi|295322010|pdb|3M7N|G Chain G, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322011|pdb|3M7N|H Chain H, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322012|pdb|3M7N|I Chain I, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|2650132|gb|AAB90743.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 259
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 132/268 (49%), Gaps = 27/268 (10%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y L ++ R D R R I + A+GSAL K+G T ++ +KM+ P +
Sbjct: 13 YVLSKLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEPYPD 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+PD G + ++ + P+ SP PG P E + +A+ + I S ++L +L + G+
Sbjct: 73 TPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKV 132
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W+V++DI+ LD DG L DA+ L+A+AA N ++P D G+ +LP
Sbjct: 133 WIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGEDYLLP------------- 179
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
+ +P S+T ++ N L DP+ EE S+ +T +T+ D + +V++ K GG
Sbjct: 180 --------VRDLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITTDKDDNVVAMQKSGGY 231
Query: 267 VL------AYTSAVQDCIALTRQRVKEL 288
+L +C R++ KE+
Sbjct: 232 LLDEKLFDELLDVSINCARKLREKFKEI 259
>gi|57641568|ref|YP_184046.1| exosome complex RNA-binding protein Rrp42 [Thermococcus
kodakarensis KOD1]
gi|73919277|sp|Q5JIR7.1|ECX2_PYRKO RecName: Full=Probable exosome complex exonuclease 2
gi|57159892|dbj|BAD85822.1| exosome subunit Rrp42p homolog, 3'-5' exoribonuclease [Thermococcus
kodakarensis KOD1]
Length = 272
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 13/231 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D RS R+ I + + A+GSA ++G T +L IK E+ P + PD G
Sbjct: 19 LREGKRIDGRSFEDYRDLEIKVNVIEKAEGSAWVRLGDTQVLVGIKAELGEPFPDLPDRG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P+ SP PG P E A +A+ + I S ++L++L +V GK ++++
Sbjct: 79 VITTNVELVPLASPTFEPGPPDENAIELARVVDRGIRESQAVDLEKLVIVPGKLVRVIFI 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ LD G L DA+ + A+AA + ++P V+ + EE E E ++ E
Sbjct: 139 DVHVLDHGGNLLDASGIGAIAALLSTKLPKVNYN------------EETGEVEILD-EYE 185
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
L + +P +T N I+ DP+ +EE +M+ +T+ D + + + K
Sbjct: 186 PLPVNHVPIPVTFAKIGNSIVVDPSLDEERVMDGRLTITTDETGHISAAQK 236
>gi|294495472|ref|YP_003541965.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM
5219]
gi|292666471|gb|ADE36320.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM
5219]
Length = 261
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 119/249 (47%), Gaps = 21/249 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D R + R+ + G + A+GSA+ + G T ++ +KM+V TP +
Sbjct: 14 YIYNLMLKGEREDGRQFNELRDIALETGIIDKAEGSAMVQYGDTQVMVGVKMQVGTPFPD 73
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
SP EG + + PI SP G P E A + + + I SG I++ +L + G+
Sbjct: 74 SPAEGVIITSMELNPIASPDFEAGPPREKAIEMGRIVDRGIRESGAIDINKLCITEGEEV 133
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
WMV++D++ L+ G + DAA L A+AA +P+ ++E E P
Sbjct: 134 WMVFIDVHVLNNSGNILDAASLGAIAALMTTTVPS--------------EREGKGEDYP- 178
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
+ + +P ++ + + ++ DPT EES+ ET +T+ + + S+ K G
Sbjct: 179 ------MPVREMPVGVSLVKIGDEMVLDPTYGEESVCETRITISSNQDGSICSMQKSGSG 232
Query: 267 VLAYTSAVQ 275
L+ V+
Sbjct: 233 SLSPAQVVK 241
>gi|58259313|ref|XP_567069.1| Opa-interacting protein OIP2 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134107613|ref|XP_777691.1| hypothetical protein CNBA8110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260385|gb|EAL23044.1| hypothetical protein CNBA8110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223206|gb|AAW41250.1| Opa-interacting protein OIP2, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 297
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 100/186 (53%), Gaps = 18/186 (9%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSL------------------SRARNTTISMGAVASAD 60
F+RL P Y R L+ RPD R + R +I+ G++++A
Sbjct: 28 FKRLHPASYLSRFLSSGYRPDGRPILPSSSFQSTASASASAADDVWRQVSINTGSISTAH 87
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVA 120
GSAL ++G TTM+ +K EV P E+P EG V + +P + SP +PG P + A +
Sbjct: 88 GSALVRMGDTTMVCGVKAEVGEPDAEAPGEGFVVPNIDLPALSSPKFKPGPPGDEAQTYS 147
Query: 121 KQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP 180
L + + SS I L L + GKAAW++Y+D+ C++ DG FDAA+L+ +AA N ++P
Sbjct: 148 NWLYELLVSSKTIPLSSLLIAPGKAAWVLYIDVVCINYDGNAFDAAVLAVMAALRNTRLP 207
Query: 181 TVSLDD 186
DD
Sbjct: 208 KAVYDD 213
>gi|348521108|ref|XP_003448068.1| PREDICTED: exosome complex component RRP45-like [Oreochromis
niloticus]
Length = 410
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 135/280 (48%), Gaps = 22/280 (7%)
Query: 24 PLRYFERH-----LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
PL ER + E R D R R IS G + G +G T ++A +
Sbjct: 5 PLSNCERDFLLKAIEEKKRLDGRQTYDYRKIKISFG---TDYGCCFVDLGQTRVMAQVSC 61
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E++ P P+EG + + + P+ SP GR +E + + +QL + +S I+ + L
Sbjct: 62 ELVAPKENRPNEGIMFFNIELSPMASPGFEQGRQSELSVKLNRQLERCLRNSKCIDTESL 121
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+V G+ W + +D++ L+ DG L DAA ++A+ A + + P VS ++ + E
Sbjct: 122 CVVSGEKVWQIRVDVHTLNNDGNLMDAASIAAITALCHFRRPDVSTQGQEVTVYSPE--- 178
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQ 256
E++P+ L++ +P S++ + Y+L DP EE +M+ L+ + ++ +
Sbjct: 179 ---ERDPI-----PLSIYHMPISVSFAFFQQGTYLLVDPCEREERVMDGLLVIAMNKHRE 230
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+ S+ GG +L V C + +V E+ +++ EA+
Sbjct: 231 ICSIQSSGGIML-LKEQVMRCSKIAGVKVSEITELINEAL 269
>gi|149411987|ref|XP_001513016.1| PREDICTED: exosome complex component RRP45-like [Ornithorhynchus
anatinus]
Length = 439
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 136/275 (49%), Gaps = 17/275 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R + RN IS G + G + ++G T +L + E++ P L
Sbjct: 12 RFLLRAIEEKKRLDGRQIYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVAPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + SP PGR ++ + + L + +S ++ + L ++ G+
Sbjct: 69 NRATEGILFFNLELSQMASPAFEPGRQSDLLVKLNRLLERCLRNSKCVDTESLCVIAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ +I + E E++P
Sbjct: 129 VWQIRVDLHVLNHDGNILDAASIAAIVALCHFRRPDVSVQGDEITLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S L Y+L DP+ EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPIYVSFAFFLQGAYLLVDPSEREERVMDGLMVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAISG 298
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGVMLLKDQVLR-CSKIAGVKVAEITELIQKALEN 271
>gi|452211131|ref|YP_007491245.1| Exosome complex exonuclease 2 [Methanosarcina mazei Tuc01]
gi|452101033|gb|AGF97973.1| Exosome complex exonuclease 2 [Methanosarcina mazei Tuc01]
Length = 263
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 118/238 (49%), Gaps = 21/238 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D R R + ++ A+GSA +G+T +L +K++ TP +
Sbjct: 12 YIYNLMIKDKRQDGRGFKDFRELKLETNVISKAEGSAKVTLGNTQVLVGVKLQTGTPFPD 71
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
S DEG + + + PI SP PG P E A +A+ + I SG I++K+L + G++
Sbjct: 72 SQDEGVIITNLELNPIASPEFEPGPPREDAIEMARVVDRGIRESGAIDIKKLCITVGESV 131
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W+V++D++ L+ DG + DA+ L+A+AA M+P EQ+
Sbjct: 132 WIVFIDVHILNNDGNIIDASCLAAIAALMT-------------TMVPNEQQGLG------ 172
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
E L + +P +T + ++ DP+ +EE++ ET +T+V S + + K G
Sbjct: 173 --ENVPLAMKEMPVGITLAKIGSKLMVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMG 228
>gi|21228726|ref|NP_634648.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina mazei
Go1]
gi|29336794|sp|Q8PTT7.1|ECX2_METMA RecName: Full=Probable exosome complex exonuclease 2
gi|20907235|gb|AAM32320.1| Ribonuclease [Methanosarcina mazei Go1]
Length = 266
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 118/238 (49%), Gaps = 21/238 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D R R + ++ A+GSA +G+T +L +K++ TP +
Sbjct: 15 YIYNLMIKDKRQDGRGFKDFRELKLETNVISKAEGSAKVTLGNTQVLVGVKLQTGTPFPD 74
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
S DEG + + + PI SP PG P E A +A+ + I SG I++K+L + G++
Sbjct: 75 SQDEGVIITNLELNPIASPEFEPGPPREDAIEMARVVDRGIRESGAIDIKKLCITVGESV 134
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W+V++D++ L+ DG + DA+ L+A+AA M+P EQ+
Sbjct: 135 WIVFIDVHILNNDGNIIDASCLAAIAALMT-------------TMVPNEQQGLG------ 175
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
E L + +P +T + ++ DP+ +EE++ ET +T+V S + + K G
Sbjct: 176 --ENVPLAMKEMPVGITLAKIGSKLMVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMG 231
>gi|70606424|ref|YP_255294.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius DSM 639]
gi|449066636|ref|YP_007433718.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius N8]
gi|449068910|ref|YP_007435991.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius Ron12/I]
gi|68567072|gb|AAY80001.1| exosome complex exonuclease RRP43-like protein [Sulfolobus
acidocaldarius DSM 639]
gi|449035144|gb|AGE70570.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius N8]
gi|449037418|gb|AGE72843.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius Ron12/I]
Length = 276
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 123/233 (52%), Gaps = 17/233 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +R D R + R +++G A+GSAL K+G+T +LA +K+E +P ++P++G
Sbjct: 23 LERGVRLDGRKPNEYRQLKVTLGYAKKAEGSALVKLGNTLVLAGVKLEEDSPYPDTPNQG 82
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ ++ + P+ PG P E + +A+ + ++ S I+L +L + GK W +++
Sbjct: 83 NLIVNVELLPLAYETFEPGPPDENSIELARIVDRSLRDSKAIDLSKLVIAPGKKVWTLWV 142
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D+Y LD DG + DA +L+++AA + ++P V ++ +I +NKE+R
Sbjct: 143 DVYVLDYDGNILDACMLASIAAIYDTKLPKVEVEGDEI---------------KINKEER 187
Query: 212 -KLTLGGIP-FSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
+ L P ++T Y++ DP +EESI + +++ +V L K
Sbjct: 188 LSIPLVNYPVVTVTTAKIGKYVVVDPNLDEESIADAKLSISYTKEGTIVGLQK 240
>gi|296243059|ref|YP_003650546.1| ribosomal RNA-processing protein RRP42 [Thermosphaera aggregans DSM
11486]
gi|296095643|gb|ADG91594.1| ribosomal RNA-processing protein RRP42 [Thermosphaera aggregans DSM
11486]
Length = 289
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 122/238 (51%), Gaps = 12/238 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + R D R L R + + + ADGS+ +G+T ++ +K+E+ P + PDEG
Sbjct: 23 LKKGERIDGRGLLDYRPINVYLNPIEKADGSSHVILGTTQVITGVKIELGEPFADRPDEG 82
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ + P+ S PG P E + VA+ + ++ I+ K+L + GK W+V+
Sbjct: 83 VLQVHAEFVPLASQTFEPGPPDENSIEVARVVDRSLREPKAIDFKQLVVAPGKKVWVVFN 142
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
DIY +D G + DA++LS++ A + +IP + + ++ + ++ PVN
Sbjct: 143 DIYLIDHGGNIMDASMLSSMLALATAKIPYYEEKEPGVYVV---DNKRHTSPLPVNTLVA 199
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
+T+G +H++ I+ DP+ EEE ++ T +T+ +D ++ + K G A L+
Sbjct: 200 TVTMG---------IHEDVIIVDPSIEEEVVLNTFLTIAVDEKGRVCGIQKKGIAGLS 248
>gi|124027457|ref|YP_001012777.1| exosome complex RNA-binding protein Rrp42 [Hyperthermus butylicus
DSM 5456]
gi|123978151|gb|ABM80432.1| RNase PH-related exoribonuclease [Hyperthermus butylicus DSM 5456]
Length = 328
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 135/266 (50%), Gaps = 16/266 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L+ +R D R L R I+ G + A+GSAL K+G T +LA +K +++ P ++P+E
Sbjct: 23 LSRGVRLDGRKLDETRPVEITPGYIDRAEGSALVKLGQTVVLAGVKTDIVAPFPDTPNEA 82
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ + P+ SP PG P E A +A+ + ++ + L +L L GK W +Y+
Sbjct: 83 VLVVHAEFVPLASPTFEPGPPDENAIELARVIDRSLREIKAVALDKLVLEPGKHVWRLYV 142
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIP-TVSLDDGKIVMLPEEQKEENSEKEPVNKEK 210
D+Y L+ DG LFDA++L+A+AA ++P V +DG V + + + PVN +
Sbjct: 143 DLYILNHDGNLFDASMLAAMAALMTTRLPAAVKTEDGYTV-----DRSKFTGLVPVNHKV 197
Query: 211 RKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAY 270
+T+ + N ++ DPT EEE + +T + V + ++ + K G L Y
Sbjct: 198 VTVTIAKL---------SNRLIVDPTYEEEQVADTRLVVAVSDDGRIAGIQKTGMGDLTY 248
Query: 271 TSAVQDCIALTRQRVKELHQILEEAI 296
V +A+ + + + LEE +
Sbjct: 249 KE-VLTAVAIALNKAQVYLKALEEKV 273
>gi|330508838|ref|YP_004385266.1| exosome complex exonuclease 2 [Methanosaeta concilii GP6]
gi|328929646|gb|AEB69448.1| exosome complex exonuclease 2 [Methanosaeta concilii GP6]
Length = 258
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 124/259 (47%), Gaps = 22/259 (8%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R + R +I + A+GSAL K+GS+ +L +KM+ P +SP+ G + +
Sbjct: 22 RIDGRKFDQYREISIERDVIRKAEGSALVKLGSSQVLVGVKMQPGEPFQDSPNRGVIITN 81
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ SP PG P E +A+ + + S ++L+ L + GK W+V++D++ L
Sbjct: 82 AELVPLASPSFEPGPPNEVGIELARLVDRGVRESKAVDLEALCIEPGKKVWIVFIDVHIL 141
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G + DAA L A++A ++P G+ +LP +
Sbjct: 142 DDCGNILDAASLGAISALLCTKVPASRFGLGEDYILP---------------------IR 180
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQD 276
IP + T I + ++ DP EEE+I T +TV+ ++ + + K G +L V
Sbjct: 181 DIPIATTAIEFSDVLMFDPGVEEEAIANTKLTVITTTNGDICGMQKSGTGMLN-PEQVYR 239
Query: 277 CIALTRQRVKELHQILEEA 295
I + ++ KE+ + EA
Sbjct: 240 IIDIACEKAKEIREKFLEA 258
>gi|386002837|ref|YP_005921136.1| Exosome complex exonuclease 2 [Methanosaeta harundinacea 6Ac]
gi|357210893|gb|AET65513.1| Exosome complex exonuclease 2 [Methanosaeta harundinacea 6Ac]
Length = 259
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 123/264 (46%), Gaps = 22/264 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D R+ R T+ G + ADGSA ++G T +L +K++ P +
Sbjct: 13 YLYHLVLKGERADGRAFDEYREITLQTGTIRKADGSADVRLGKTRVLVGVKIQPGEPFAD 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+P++G + + + P+ SP PG P E +A+ + + SG I+L L + G+
Sbjct: 73 TPNKGVIITNAELVPLASPNFEPGPPNEVGIELARVVDRGVRESGAIDLPSLCIAPGEKV 132
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W+V++D++ LD G L DA+ L A+AA +P G+ LP
Sbjct: 133 WIVFIDVHVLDDCGNLMDASSLGAIAALMTATVPAAQYGLGEDYPLPVRD---------- 182
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
+P + T + + I+ DP ++EES+ +T +TV+ + + + K G
Sbjct: 183 -----------VPVATTAVEFGDAIIFDPDTDEESVADTKLTVITTADGSVCGMQKSGPG 231
Query: 267 VLAYTSAVQDCIALTRQRVKELHQ 290
L+ + + + +R KE+ +
Sbjct: 232 FLS-QDKIYRIVDIACERAKEIRE 254
>gi|15897635|ref|NP_342240.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus solfataricus
P2]
gi|284174961|ref|ZP_06388930.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus solfataricus
98/2]
gi|384434250|ref|YP_005643608.1| 3' exoribonuclease [Sulfolobus solfataricus 98/2]
gi|29337006|sp|Q9UXC0.1|ECX2_SULSO RecName: Full=Probable exosome complex exonuclease 2
gi|71042716|pdb|2BR2|A Chain A, Rnase Ph Core Of The Archaeal Exosome
gi|71042718|pdb|2BR2|C Chain C, Rnase Ph Core Of The Archaeal Exosome
gi|71042720|pdb|2BR2|E Chain E, Rnase Ph Core Of The Archaeal Exosome
gi|71042722|pdb|2BR2|G Chain G, Rnase Ph Core Of The Archaeal Exosome
gi|71042724|pdb|2BR2|I Chain I, Rnase Ph Core Of The Archaeal Exosome
gi|71042726|pdb|2BR2|K Chain K, Rnase Ph Core Of The Archaeal Exosome
gi|71042728|pdb|2BR2|M Chain M, Rnase Ph Core Of The Archaeal Exosome
gi|71042730|pdb|2BR2|O Chain O, Rnase Ph Core Of The Archaeal Exosome
gi|71042732|pdb|2BR2|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome
gi|71042734|pdb|2BR2|S Chain S, Rnase Ph Core Of The Archaeal Exosome
gi|71042736|pdb|2BR2|U Chain U, Rnase Ph Core Of The Archaeal Exosome
gi|71042738|pdb|2BR2|W Chain W, Rnase Ph Core Of The Archaeal Exosome
gi|83754538|pdb|2C37|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754540|pdb|2C37|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754542|pdb|2C37|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754544|pdb|2C37|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754546|pdb|2C37|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754548|pdb|2C37|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754550|pdb|2C37|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754552|pdb|2C37|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754554|pdb|2C37|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754556|pdb|2C37|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754558|pdb|2C37|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754560|pdb|2C37|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754562|pdb|2C38|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754566|pdb|2C38|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754568|pdb|2C38|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754570|pdb|2C38|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754572|pdb|2C38|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754574|pdb|2C38|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754576|pdb|2C38|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754578|pdb|2C38|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754580|pdb|2C38|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754582|pdb|2C38|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754586|pdb|2C39|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754588|pdb|2C39|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754590|pdb|2C39|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754592|pdb|2C39|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754594|pdb|2C39|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754596|pdb|2C39|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754598|pdb|2C39|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754600|pdb|2C39|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754602|pdb|2C39|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754604|pdb|2C39|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754606|pdb|2C39|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754608|pdb|2C39|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|313507220|pdb|2C38|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|313507221|pdb|2C38|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|6015744|emb|CAB57571.1| conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|13813902|gb|AAK41030.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261602404|gb|ACX92007.1| 3' exoribonuclease [Sulfolobus solfataricus 98/2]
Length = 275
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 121/233 (51%), Gaps = 17/233 (7%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
+ IR D R L+ R +I++ ADGSAL K+G+T +LA K+E+ P ++P++G +
Sbjct: 25 KGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNL 84
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDI 153
++ + P+ PG P E A +A+ + ++ S ++L +L + GK+ W V+LD+
Sbjct: 85 IVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDV 144
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK--R 211
Y LD G + DA L++VAA N ++ V E++S VNK +
Sbjct: 145 YVLDYGGNVLDACTLASVAALYNTKVYKV---------------EQHSNGISVNKNEVVG 189
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
KL L +++ Y++ DP +EESIM+ ++ ++V + K G
Sbjct: 190 KLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSG 242
>gi|126031137|pdb|2JE6|A Chain A, Structure Of A 9-Subunit Archaeal Exosome
gi|145579800|pdb|2JEA|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
gi|145579804|pdb|2JEB|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
gi|407943801|pdb|4BA1|A Chain A, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
gi|407943804|pdb|4BA2|A Chain A, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
Length = 277
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 121/233 (51%), Gaps = 17/233 (7%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
+ IR D R L+ R +I++ ADGSAL K+G+T +LA K+E+ P ++P++G +
Sbjct: 27 KGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNL 86
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDI 153
++ + P+ PG P E A +A+ + ++ S ++L +L + GK+ W V+LD+
Sbjct: 87 IVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDV 146
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK--R 211
Y LD G + DA L++VAA N ++ V E++S VNK +
Sbjct: 147 YVLDYGGNVLDACTLASVAALYNTKVYKV---------------EQHSNGISVNKNEVVG 191
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
KL L +++ Y++ DP +EESIM+ ++ ++V + K G
Sbjct: 192 KLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSG 244
>gi|84490040|ref|YP_448272.1| exosome complex RNA-binding protein Rrp42 [Methanosphaera
stadtmanae DSM 3091]
gi|84373359|gb|ABC57629.1| putative exosome complex, exonuclease 2 subunit [Methanosphaera
stadtmanae DSM 3091]
Length = 265
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 129/264 (48%), Gaps = 19/264 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + R D R S RN +I + ADGSA+ IG TT++ +K ++ TP +P+ G
Sbjct: 17 LNQGKRIDDRKFSEYRNISIKTNYIGKADGSAMVSIGCTTVIVGVKAQMTTPFNNAPNSG 76
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ + + I S G P + A +++ + I S +++L +L ++ G +W +++
Sbjct: 77 IIITNTELLAIASRNFEYGPPNKFAVEISRVVDRAIRESPVVDLDKLCVIEGSKSWKLHI 136
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D+Y +D DG + DAA L A+ A +IPT + +G+IV+ EEN P+
Sbjct: 137 DMYIVDFDGNIMDAACLGAICALLTTKIPTATSVNGEIVI-----DEENLTPLPIKNR-- 189
Query: 212 KLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
S+ C + K N ++ DP+ EE +M++ V+ L +L K G L
Sbjct: 190 ---------SILCTVVKINNQLIVDPSKIEEILMDSSVSFGFREDGSLCALQKCGLNTLT 240
Query: 270 YTSAVQDCIALTRQRVKELHQILE 293
+ V + + R KEL I++
Sbjct: 241 H-KEVTKAMKIASIRAKELFSIID 263
>gi|15920654|ref|NP_376323.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus tokodaii str.
7]
gi|29336897|sp|Q975G9.1|ECX2_SULTO RecName: Full=Probable exosome complex exonuclease 2
gi|342306197|dbj|BAK54286.1| exosome core subunit Rrp42 [Sulfolobus tokodaii str. 7]
Length = 275
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 133/266 (50%), Gaps = 14/266 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L IR D R S R ++++ A+GSAL K+G T +LA +K+E P ++P++G
Sbjct: 23 LERGIRLDGRKNSDYRPISVTLNYAKKAEGSALVKLGDTMVLAGVKLEEEEPFPDTPNQG 82
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ ++ + P+ PG P E A +A+ + ++ S ++L +L ++ GK W ++
Sbjct: 83 NLVVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKAVDLSKLVIIPGKKVWTAWV 142
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D+Y LD G + DA L+AVAA N ++P V ++ + ++ EE+ + PV
Sbjct: 143 DVYVLDYGGNVLDACTLAAVAALYNTKLPKVEIEGDNVKIIKEEKTDVTPIAYPV----- 197
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
++T Y++ DP+ +EESI + ++ ++V + K L+
Sbjct: 198 --------VTVTVAKIGKYLVVDPSLDEESIADVKISFSYVQDGRIVGMQKSNFGSLSLQ 249
Query: 272 SAVQDCIALTRQRVKELHQILEEAIS 297
V +L R ++L + L++ I+
Sbjct: 250 E-VDVAESLARSASQKLFEELKKQIN 274
>gi|14520827|ref|NP_126302.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus abyssi GE5]
gi|29337009|sp|Q9V118.1|ECX2_PYRAB RecName: Full=Probable exosome complex exonuclease 2
gi|5458043|emb|CAB49533.1| RNAse PH-related exoribonuclease [Pyrococcus abyssi GE5]
gi|380741369|tpe|CCE70003.1| TPA: exosome complex RNA-binding protein Rrp42 [Pyrococcus abyssi
GE5]
Length = 274
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 135/265 (50%), Gaps = 14/265 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D R R I +G + A+GSAL K+GST +L IK + P ++P+ G
Sbjct: 19 LKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P+ SP PG P E A +A+ + I S +NL+++ +V GK +V++
Sbjct: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFI 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ LD DG L DA ++A+AA N ++P V + EE E E ++ E
Sbjct: 139 DVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYN------------EETGEVETLD-ETE 185
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
L + IP +T N ++ DP+ +EE +M+ +T+ D + + ++ K G
Sbjct: 186 PLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKL- 244
Query: 272 SAVQDCIALTRQRVKELHQILEEAI 296
V + ++ +E+ +++ EA+
Sbjct: 245 EEVMYAVETAFKKAEEIRKLILEAV 269
>gi|222444528|ref|ZP_03607043.1| hypothetical protein METSMIALI_00140 [Methanobrevibacter smithii
DSM 2375]
gi|222434093|gb|EEE41258.1| 3' exoribonuclease family, domain 1 [Methanobrevibacter smithii DSM
2375]
Length = 265
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 126/256 (49%), Gaps = 15/256 (5%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L R+ +I ++ A+GSA KIG T ++ IK ++ P ++PD G + +
Sbjct: 25 REDGRELDEYRDISIETDVISKAEGSARVKIGDTQVIVGIKPQIGAPFPDTPDLGVLMTN 84
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
M P+ P PG P+E + +A+ + I S +++L +L + GK WM+++D++ +
Sbjct: 85 CEMLPMADPTFEPGPPSEDSIELARVVDRGIRESELVDLDKLCVEEGKHVWMLFIDLHII 144
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G LFDA L+ +AA + ++P+ S+ D ++V+ EN+ P+N E T
Sbjct: 145 DNCGNLFDACELAVMAALKSTKLPSASIADDEVVL-----DHENTIDLPINNEVAMCTFV 199
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQD 276
I + ++ DPT EE + + V + + ++ K G + L
Sbjct: 200 KI---------GDKLILDPTLNEEKVASARLNVGVTKDGNICAMQKGGISPLTKEDIFY- 249
Query: 277 CIALTRQRVKELHQIL 292
C+ + KEL + L
Sbjct: 250 CVDKAVSKTKELVEYL 265
>gi|341582107|ref|YP_004762599.1| exosome complex RNA-binding protein Rrp42 [Thermococcus sp. 4557]
gi|340809765|gb|AEK72922.1| exosome complex RNA-binding protein Rrp42 [Thermococcus sp. 4557]
Length = 269
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 13/235 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D R L R+ I + + A+GSA ++G+T +L +K+++ P + PD G
Sbjct: 16 LKEGKRVDGRGLEDYRDLEIKVNVIEKAEGSAWVRLGNTQVLVGVKVDMGEPFPDLPDRG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P+ SP PG P E A +A+ + I S + L++L +V GK +V++
Sbjct: 76 VITTNVELVPLASPSFEPGPPDENAIELARVVDRGIRESQAVELEKLVIVPGKLVRVVFI 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ LD DG L DA+ + A+AA + ++P V + EE E E V E
Sbjct: 136 DVHVLDHDGNLLDASGIGAIAALLSTRMPKVVYN------------EETDEVE-VLDEYE 182
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
L + IP +T IL DP +EE +M+ + + D + + S+ K G
Sbjct: 183 PLPVRRIPIPVTMAKIGPNILVDPNLDEERVMDGRIIITTDENAMISSVQKSEGG 237
>gi|170292235|pdb|2PNZ|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Udp And Gmp
gi|170292237|pdb|2PO0|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Adp In Double Conformation
gi|170292240|pdb|2PO1|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With A Single Stranded 10-Mer Poly(A) Rna
gi|170292242|pdb|2PO2|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Cdp
Length = 277
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 135/265 (50%), Gaps = 14/265 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D R R I +G + A+GSAL K+GST +L IK + P ++P+ G
Sbjct: 22 LKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMG 81
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P+ SP PG P E A +A+ + I S +NL+++ +V GK +V++
Sbjct: 82 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFI 141
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ LD DG L DA ++A+AA N ++P V + EE E E ++ E
Sbjct: 142 DVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYN------------EETGEVETLD-ETE 188
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
L + IP +T N ++ DP+ +EE +M+ +T+ D + + ++ K G
Sbjct: 189 PLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKL- 247
Query: 272 SAVQDCIALTRQRVKELHQILEEAI 296
V + ++ +E+ +++ EA+
Sbjct: 248 EEVMYAVETAFKKAEEIRKLILEAV 272
>gi|148642301|ref|YP_001272814.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
smithii ATCC 35061]
gi|148551318|gb|ABQ86446.1| ribonuclease PH-related protein [Methanobrevibacter smithii ATCC
35061]
Length = 262
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 126/256 (49%), Gaps = 15/256 (5%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L R+ +I ++ A+GSA KIG T ++ IK ++ P ++PD G + +
Sbjct: 22 REDGRELDEYRDISIETDVISKAEGSARVKIGDTQVIVGIKPQIGAPFPDTPDLGVLMTN 81
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
M P+ P PG P+E + +A+ + I S +++L +L + GK WM+++D++ +
Sbjct: 82 CEMLPMADPTFEPGPPSEDSIELARVVDRGIRESELVDLDKLCVEEGKHVWMLFIDLHII 141
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G LFDA L+ +AA + ++P+ S+ D ++V+ EN+ P+N E T
Sbjct: 142 DNCGNLFDACELAVMAALKSTKLPSASIADDEVVL-----DHENTIDLPINNEVAMCTFV 196
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQD 276
I + ++ DPT EE + + V + + ++ K G + L
Sbjct: 197 KI---------GDKLILDPTLNEEKVASARLNVGVTKDGNICAMQKGGISPLTKEDIFY- 246
Query: 277 CIALTRQRVKELHQIL 292
C+ + KEL + L
Sbjct: 247 CVDKAVSKTKELVEYL 262
>gi|330835837|ref|YP_004410565.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina
Ar-4]
gi|329567976|gb|AEB96081.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina
Ar-4]
Length = 283
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 116/228 (50%), Gaps = 13/228 (5%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R + R +I++G ADGSAL K+G TT+LA +K+E P ++P++G + ++
Sbjct: 28 RNDGRKFNDYRPLSITLGYAKKADGSALVKLGDTTVLAGVKIEEDEPYSDTPNQGNLVVN 87
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ PG P E A +++ + ++ S ++L L + GK W V++DI L
Sbjct: 88 AELLPLAYETFEPGPPDENAIELSRVVDRSLRDSKAVDLSALVIEPGKRVWTVWVDISVL 147
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G + DA LSAVAA + ++P + D+G I ++ E++ + PV
Sbjct: 148 DYGGNILDACTLSAVAALYDTKLPRIVNDNGTINIVKEDKTTPFPIRYPV---------- 197
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
++T +++ DP EEE IM+ ++ +V + K G
Sbjct: 198 ---ATVTIAKLGKFLVVDPDLEEEGIMDAKISFSYIPDGHIVGIQKSG 242
>gi|327274166|ref|XP_003221849.1| PREDICTED: exosome complex exonuclease RRP45-like [Anolis
carolinensis]
Length = 439
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 135/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ + + E R D R RN IS G S G + ++G T +L + E++TP
Sbjct: 12 RFLLKAIEERKRLDGRECYDYRNLRISFG---SDYGCCIVELGKTRILGQVSCELVTPKP 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + P+ SP PGR E + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSPMASPAFEPGRQPELLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ +G L DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHVLNHNGNLIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S ++L DP+ +EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTFLLVDPSEQEERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C +T +V E+ ++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKITGVKVAEITALIQKAL 269
>gi|374325947|ref|YP_005084147.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum sp. 1860]
gi|356641216|gb|AET31895.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum sp. 1860]
Length = 273
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 13/234 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
LA R D R + R+ I G V +ADGSA ++G T ++A +K+ + P ++PDEG
Sbjct: 24 LAAKYRIDGRGPDQMRDVEIKTGVVKTADGSAEVRLGKTHVVAGVKVGLGQPFPDAPDEG 83
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ ++ + P SP G P E+A +A+ + I G ++ K+L + GGK A+++++
Sbjct: 84 VLVVNAEVLPHASPYTEVGPPDESAIELARVVDRGIRHCGYVDFKKLVVEGGK-AYILWI 142
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D+Y ++ DG L DAA L++VAA N Q+PT D+ V L N PV+ K
Sbjct: 143 DLYVINDDGNLVDAANLASVAALKNTQLPTAVKDEAGAVKL----DRNNKLPLPVDVAK- 197
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
P + + N + DPT EEE ++ +T S +++V+ K G
Sbjct: 198 ------APVAASVGKIGNVLFLDPTFEEELSLDGRITFTF-SEDKIVAAQKTLG 244
>gi|409096212|ref|ZP_11216236.1| exosome complex RNA-binding protein Rrp42 [Thermococcus zilligii
AN1]
Length = 276
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 139/272 (51%), Gaps = 19/272 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + R D R L RN I G + A+GSAL K+G T +L +K+E P + P+ G
Sbjct: 19 LKDGKRLDGRGLEDYRNIEIRTGLIEKAEGSALVKLGDTMVLVGVKVEFGEPFPDLPERG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P+ SP PG P E A +A+ + I S I+L +L +V GK +++++
Sbjct: 79 VMTTNVELVPLASPTFEPGPPDERAVELARIVDRGIRESNAIDLDKLVIVPGKLVYVLFI 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD--DGKIVMLPEEQKEENSEKEPVNKE 209
D++ LD DG L DAA L+A+AA +IP V + G+++ L E E PVN
Sbjct: 139 DVHVLDHDGNLIDAAGLAAMAALMTTKIPRVQYNAETGELIKLNE------LEPLPVNH- 191
Query: 210 KRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
+P +T + ++ DP+ EEE++M++ +T+ D + + ++ K G
Sbjct: 192 --------VPVPVTFAKIGSSLVVDPSLEEETVMDSRLTITTDETGHISAVQKGEGGAFK 243
Query: 270 YTSAVQDCIALTRQRVKELHQILEEAISGMEI 301
+ + ++ E+ +IL ++G E+
Sbjct: 244 L-EEIMYAVDTAFKKASEIREILLN-VTGFEL 273
>gi|351703822|gb|EHB06741.1| Exosome complex exonuclease RRP45 [Heterocephalus glaber]
Length = 462
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E++ P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVAPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +DI+ L+ DG + DAA ++AV A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDIHLLNHDGNIIDAASIAAVVALCHFRRPDVSVQGEEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----ALSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELIQKAL 269
>gi|405118209|gb|AFR92984.1| opa-interacting protein OIP2 [Cryptococcus neoformans var. grubii
H99]
Length = 272
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 110/206 (53%), Gaps = 29/206 (14%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSL------------------SRARNTTISMGAVASAD 60
F+RL P Y R L+ RPD R + R +I+ G++++A
Sbjct: 28 FKRLHPASYLSRFLSSGYRPDGRPILPSSSSSSQPTASASAADDVWRQVSINTGSISTAH 87
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVA 120
GSAL ++G TTM+ +K E+ P E+P EG + + +P + SP +PG P + A +
Sbjct: 88 GSALVRMGDTTMVCGVKAEIGEPDTETPGEGFIVPNIDLPALSSPKFKPGPPGDEAQTYS 147
Query: 121 KQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSN---- 176
L++ + SS I L L + GKAAW++Y+D+ C++ DG FDAA+L+ +AA N
Sbjct: 148 NWLNELLVSSKTIPLSSLLIAPGKAAWVLYIDVVCINYDGNAFDAAVLAVMAALRNNPTS 207
Query: 177 LQIP------TVSLD-DGKIVMLPEE 195
+ P T++LD DG+ ++ +E
Sbjct: 208 FETPLLPTTLTIALDQDGQAALVRQE 233
>gi|347524282|ref|YP_004781852.1| 3' exoribonuclease [Pyrolobus fumarii 1A]
gi|343461164|gb|AEM39600.1| 3' exoribonuclease [Pyrolobus fumarii 1A]
Length = 327
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 13/237 (5%)
Query: 28 FERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLES 87
E L R D R L + R+ I G V A+GSAL K+G+T +LA +KM++ P ++
Sbjct: 19 IESLLERGARLDGRRLDQIRSIEIIPGYVGKAEGSALVKLGNTMVLAGVKMDITQPFPDT 78
Query: 88 PDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAW 147
PDE + + P+ SP+ PG P E A +A+ + + + L L L GKA W
Sbjct: 79 PDEAVLVVHAEFVPLASPVFEPGPPDENAIELARVVDRALREIRAVALDRLVLEPGKAVW 138
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVN 207
+Y+DIY L+ DG L DA++L+++AA ++P V + ++ + P+N
Sbjct: 139 RIYVDIYVLNHDGNLLDASMLASMAALMATRVPAVRRTGEGFAI----ERGRYTGLLPIN 194
Query: 208 KEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+T+ I + ++ DP+ +EE + + + V + N++ L G
Sbjct: 195 NRVVTVTVAKI---------GSRMVVDPSFDEELVADVRLAVAVSDDNRIAGLQMMG 242
>gi|116754658|ref|YP_843776.1| exosome complex RNA-binding protein Rrp42 [Methanosaeta thermophila
PT]
gi|116666109|gb|ABK15136.1| ribosomal RNA-processing protein RRP42 [Methanosaeta thermophila
PT]
Length = 257
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 21/243 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y L R D RS ++ R I + A+GSAL K+G T ++ IK++ P +
Sbjct: 12 YLYNLLLRGERADGRSFTQYRPIEIERNIIKKAEGSALVKLGKTQVMVGIKIQPGEPFPD 71
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+P+ G + + + P+ SP+ PG P E +A+ + + SG ++L L +V G+
Sbjct: 72 APNRGVIVTNAELVPLASPIFEPGPPNEYGIELARVVDRGVRESGSVDLDALCIVPGEKV 131
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W++++DI+ LD G + DA+ L A+AA +P G+ LP
Sbjct: 132 WIIFIDIHILDDCGNIMDASSLGAIAALLGATVPASRFGLGEDFQLPVRD---------- 181
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
IP + T + + +L DP +EE+I + +TV+ + + + K G
Sbjct: 182 -----------IPIATTAVEFGDVVLFDPDVDEEAIADAKLTVITKADGTICGMQKSGPG 230
Query: 267 VLA 269
+L+
Sbjct: 231 MLS 233
>gi|357447261|ref|XP_003593906.1| Exosome complex exonuclease RRP45 [Medicago truncatula]
gi|355482954|gb|AES64157.1| Exosome complex exonuclease RRP45 [Medicago truncatula]
Length = 449
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 137/276 (49%), Gaps = 20/276 (7%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ E L +R D R R I G DGSA ++G T +++ + +++ P
Sbjct: 17 KFIESALLSELRVDGRGPLDYRKLNIKFG---RDDGSAEIQLGETRVMSFVSAQLVQPYK 73
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P+EG +SI P+ P PGRP E+A + + + + S I+ + L ++ K
Sbjct: 74 DRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAIDTESLCILSAKL 133
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL---DDGKIVMLPEEQKEENSE 202
W + +DI+ LD G L DAA ++A+A+ + P SL D ++V+ P E
Sbjct: 134 VWAIRIDIHILDNAGNLVDAANIAALASLKTFRRPECSLGGEDGQQVVVHPPEV------ 187
Query: 203 KEPVNKEKRKLTLGGIPFSLTCIL--HKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
+EP+ L + +P ++T ++N ++ DPT EE++M +T L+++ + ++
Sbjct: 188 REPL-----PLIIHHLPVAVTFGFFSNENLVVLDPTYHEEAVMTGRMTATLNANGDVCAI 242
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
KPGG + + + C+ L + ++ + +A+
Sbjct: 243 QKPGGQGV-FQRVIMHCLKLAHVKAGDITSKINDAV 277
>gi|119719493|ref|YP_919988.1| exosome complex RNA-binding protein Rrp42 [Thermofilum pendens Hrk
5]
gi|119524613|gb|ABL77985.1| ribosomal RNA-processing protein RRP42 [Thermofilum pendens Hrk 5]
Length = 272
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 120/233 (51%), Gaps = 15/233 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
LA+ R D R + R + G + ADGSA +GST ++A +K+ + TP ++P+EG
Sbjct: 20 LAKGERLDGRKADQYREIRLEKGIIGKADGSARVFLGSTQVIAGVKLAIGTPFPDAPNEG 79
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + P+ SP PG P E +A+ + S+ +++L +LS++ W +Y+
Sbjct: 80 VQIVNAELSPVASPFFEPGPPGEEDIELARVVDRGFRSAKVVDLAKLSIIPSAKCWTLYI 139
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
DIY LD DG L DAA L+A+ A + ++P S+ + KI +L EK+P
Sbjct: 140 DIYPLDHDGNLVDAAGLAALLALLDTKLPRTSVQENKIAVL--------DEKDP------ 185
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
L + + +T Y++ DPT EEE + +T + ++ ++ K G
Sbjct: 186 -LPINTLVVYVTVAKIGEYLVVDPTLEEELTADAKITFGITERGEICAIQKSG 237
>gi|47213776|emb|CAF92665.1| unnamed protein product [Tetraodon nigroviridis]
Length = 379
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 138/281 (49%), Gaps = 24/281 (8%)
Query: 24 PLRYFERH-----LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
PL ER+ + E R D R R +S GA G ++G T ++A +
Sbjct: 5 PLSNSERNFLLKAIEEKKRLDGRQTYDYRRIRVSFGA---DYGCCFVELGETRVMAQVSC 61
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E++ P P+EG + + + P+ SP GR +E + + +QL + +S I+ + L
Sbjct: 62 ELVAPKESRPNEGILFFNIELSPLASPAFEAGRQSELSVNLNRQLERCLRNSKCIDTESL 121
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQK 197
+V G+ W + +D++ L+ DG L DAA ++A+ A + + P V + +I V PE
Sbjct: 122 CVVSGEKVWQIRVDVHMLNHDGNLMDAASIAAITALCHFRRPDVGIVGEEIKVFSPE--- 178
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSN 255
E++P+ L++ +P S++ + Y+L DP EE +M+ L+ + ++
Sbjct: 179 ----ERDPI-----PLSIYHMPISVSFSFFQQGTYLLVDPCEREERVMDGLLMIAMNKHR 229
Query: 256 QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
++ S+ GG +L V C + +V E+ +++ +A+
Sbjct: 230 EICSIQSSGGIML-LKEQVMRCSKIASVKVSEITELVSKAL 269
>gi|224131852|ref|XP_002321194.1| predicted protein [Populus trichocarpa]
gi|222861967|gb|EEE99509.1| predicted protein [Populus trichocarpa]
Length = 287
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 133/282 (47%), Gaps = 13/282 (4%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
+ + + +++R D R R +I G + A+GSA +IG+T ++A++K E+ P+
Sbjct: 10 HFIQGGIDQNLRSDGRKRDAYRPISIETGVIPQANGSARIRIGATEVIASVKAELGRPNA 69
Query: 86 ESPDEGCVSIDFHMPPICSPLV--RPGRPAEAAPVVAKQ---LSDTISSSGMINLKELSL 140
PD+G V+I P+ P+ R G A VA Q L + I+L L +
Sbjct: 70 LQPDKGKVAIFVDCSPVAEPMFEGRGGEELSAELSVALQRCLLGGKSGAGAGIDLSSLIV 129
Query: 141 VGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEEN 200
GK W +Y+D + +DG L DA + AA SN IP V + G +E
Sbjct: 130 AEGKICWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPRVQVAAGA-------SGDEQ 182
Query: 201 SEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
E + ++E + G+P +T + + D TSEEES M + V+V + Q+ L
Sbjct: 183 PEVDISDEEFMQFDTSGVPVIVTLTKVGRHYIVDATSEEESQMSSAVSVSISRKGQICGL 242
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
K G A L S + D I++ R ++L L+ IS E D
Sbjct: 243 SKRGSAGLD-PSVISDMISVARHISEQLINKLDSEISAAEAD 283
>gi|410721457|ref|ZP_11360792.1| RNase PH-related exoribonuclease [Methanobacterium sp. Maddingley
MBC34]
gi|410598914|gb|EKQ53477.1| RNase PH-related exoribonuclease [Methanobacterium sp. Maddingley
MBC34]
Length = 266
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 136/266 (51%), Gaps = 29/266 (10%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R+L + R ++ G + A+GSA KIG T ++ K ++ P ++P+ G + +
Sbjct: 23 RADGRALDQYREISLETGVIKKAEGSARVKIGKTQIVVGAKPQIGEPFPDTPNVGVLITN 82
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ +P G P E + +++ I ++L++L ++ GK WM++LD++ +
Sbjct: 83 SELLPMAAPNFEAGPPNETSVELSRVTDRCIREGKTVDLEKLVIIPGKKVWMIFLDLHIV 142
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIV-----MLPEEQKEENSEKEPVNKEKR 211
D DG L DAA+L ++AA N +IP+ +++ ++V M+P KE+
Sbjct: 143 DYDGNLMDAAVLGSLAALMNTKIPSTTIEGDEVVIDYGTMVPIPIKEQ------------ 190
Query: 212 KLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
L C + K ++ADP+ EE+ +++ +++ + + ++ K GG+V
Sbjct: 191 ---------PLMCTMAKIGGELVADPSLEEDDVLDARISIGMRVDGSICAMQK-GGSVPL 240
Query: 270 YTSAVQDCIALTRQRVKELHQILEEA 295
+ + + +++ KEL + + +A
Sbjct: 241 TREEILKAVEMAQKKTKELRENIPKA 266
>gi|305663899|ref|YP_003860187.1| 3' exoribonuclease [Ignisphaera aggregans DSM 17230]
gi|304378468|gb|ADM28307.1| 3' exoribonuclease [Ignisphaera aggregans DSM 17230]
Length = 286
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + D R L+ R+ + +AD S L K+G+T +LA +K+EV P +SP+EG
Sbjct: 22 LNKGFHVDRRPLTSYRSFEVKFNIAPNADSSVLFKLGNTQILAGVKLEVGQPFPDSPNEG 81
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ ++ P SP PG P E A +A+ + + + +I L +L +V GK W+V+L
Sbjct: 82 ILIVNAEYLPAASPTFEPGPPDENAIELARVIDRGLREAKVIALDKLVIVPGKRVWIVWL 141
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
DIY LD DG L DA+ ++++ A + IP +D L K + + K +
Sbjct: 142 DIYILDHDGNLIDASAMASMLALATTFIPYYEVDP-----LTSNVKIDRTRK------LQ 190
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA-- 269
+L L S+T + ++ DPT EEE+I + + + + +V + K G +
Sbjct: 191 RLPLNRYVVSVTVNKIGDLLVIDPTGEEEAIASSKLAISISEEGNIVGIQKMGIGYVTED 250
Query: 270 -YTSAVQDCIALTRQRVKELHQILEE 294
A+ +++ +++L +I+ +
Sbjct: 251 DINKAIDIALSIGIDNIEKLKKIINQ 276
>gi|77797833|ref|NP_001030000.1| exosome complex exonuclease RRP45 [Gallus gallus]
gi|50593178|gb|AAT79383.1| polymyositis/scleroderma autoantigen 1 [Gallus gallus]
Length = 440
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 132/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G G + ++G T +L + E++ P
Sbjct: 12 RFLLRAIQERKRLDGRQCYDYRNVRISFGP---EHGCCVVELGKTRVLGQVSCELVPPKP 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + P+ +P PGR +E V + + + +S I+ + L +V G+
Sbjct: 69 NRATEGILFCNLELSPMAAPGFEPGRQSELLVKVNRLIERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++ + A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIVDAASIAGIVALCHFRRPDVSVQGKEVTVYSPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C +T +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKITAVKVAEITELIQKAL 269
>gi|146302863|ref|YP_001190179.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera sedula
DSM 5348]
gi|145701113|gb|ABP94255.1| ribosomal RNA-processing protein RRP42 [Metallosphaera sedula DSM
5348]
Length = 280
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 118/233 (50%), Gaps = 13/233 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L R D R + R +I++G ADGSAL K+G TT+LA +K+E P ++P++G
Sbjct: 23 LERGTRSDGRKFTDYRPLSITLGYAKKADGSALVKLGDTTVLAGVKVEEDEPYPDTPNQG 82
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ ++ + P+ PG P E A +++ + ++ S ++L L + GK W V++
Sbjct: 83 NLVVNAELLPLAYETFEPGPPDENAIELSRVVDRSLRDSKAVDLSGLVIEPGKKVWTVWV 142
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
DI LD G + DA ++AVAA + ++P V ++ I++ QKEE P+
Sbjct: 143 DISVLDYGGNVLDACTIAAVAALYDAKLPKVVRENDNIII----QKEEKVTPLPIKYPVV 198
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+++ I +++ DP EEE IM+ ++ S +V + K G
Sbjct: 199 TVSVAKI---------GKFLVVDPDLEEEGIMDAKISFSYIPSGNIVGIQKSG 242
>gi|299689088|pdb|3L7Z|A Chain A, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689091|pdb|3L7Z|D Chain D, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689094|pdb|3L7Z|G Chain G, Crystal Structure Of The S. Solfataricus Archaeal Exosome
Length = 271
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 21/233 (9%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
+ IR D R L+ R +I++ ADGSAL K+G+T +LA K+E+ P ++P++G +
Sbjct: 25 KGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNL 84
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDI 153
++ + P+ PG P E A +A+ + ++ S ++L +L + GK+ W V+LD+
Sbjct: 85 IVNVELLPLAYTTFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDV 144
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK--R 211
Y LD G + DA L++VAA N ++ V E+ VNK +
Sbjct: 145 YVLDYGGNVLDACTLASVAALYNTKVYKV-------------------EQISVNKNEVVG 185
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
KL L +++ Y++ DP +EESIM+ ++ ++V + K G
Sbjct: 186 KLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSG 238
>gi|52548824|gb|AAU82673.1| 3'-5' exoribonuclease [uncultured archaeon GZfos19A5]
Length = 257
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 115/232 (49%), Gaps = 21/232 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R R+ ++ + A+GSA KIG T +L +K+E+ TP ++PD+G + +
Sbjct: 23 REDGRGFREYRDISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTPFPDTPDKGVIITN 82
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ SP G P E + +A+ + I S I+L +L + G+ WMV++DI+ L
Sbjct: 83 AELVPLASPKFESGPPNENSIQLARVVDRGIRGSETIDLDKLCIEEGEKVWMVFIDIHVL 142
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D +G L DAA L A+ + NL+IP +E+ + E L +
Sbjct: 143 DDNGNLVDAAALGAITSLLNLRIP--------------------NERYGLTGEN-TLPMR 181
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
P ++T + + IL DP+ +E + + VTV+ ++ L + K G L
Sbjct: 182 DTPVAVTTVEIEGNILVDPSFDEGNAAASSVTVISNADGALSGMQKSGSGGL 233
>gi|296195656|ref|XP_002745482.1| PREDICTED: exosome complex component RRP45 [Callithrix jacchus]
Length = 440
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E++ P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVAPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASVAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELIQKAL 269
>gi|288560608|ref|YP_003424094.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
ruminantium M1]
gi|288543318|gb|ADC47202.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
ruminantium M1]
Length = 263
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 123/236 (52%), Gaps = 15/236 (6%)
Query: 30 RHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPD 89
R + + R D R+ R+ I + A+GSA K+G T ++ +K + P ++P+
Sbjct: 14 RLINDGKRADGRAFDERRDIFIEPNVIDKAEGSARVKLGDTQVIVGVKPTIGEPFADTPN 73
Query: 90 EGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMV 149
G + + + P+ +P PG P+ + +A+ + I S +++L++L + GK WM+
Sbjct: 74 LGVLMTNCELLPMAAPGFEPGPPSPESIELARVVDRGIRESELVDLEKLCIEEGKKVWML 133
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKE 209
++D++ +D DG LFD A L+ ++A N ++P D ++V+ E+ + PV
Sbjct: 134 FIDLHVIDYDGNLFDCANLAVMSALLNTKLPVAEYIDDEVVL-----SEDETMDLPV--- 185
Query: 210 KRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTV-VLDSSNQLVSLYKPG 264
+ KL L T + N ++ DP+ EEE I++ +T+ V D N + S+ K G
Sbjct: 186 RDKLALS------TFVKIGNGLILDPSLEEEEILDARITIGVTDEGNHICSMQKGG 235
>gi|297527571|ref|YP_003669595.1| 3' exoribonuclease [Staphylothermus hellenicus DSM 12710]
gi|297256487|gb|ADI32696.1| 3' exoribonuclease [Staphylothermus hellenicus DSM 12710]
Length = 285
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 133/272 (48%), Gaps = 15/272 (5%)
Query: 28 FERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLES 87
++ L + R D R L R + + + A+GSA K+G+T ++ +K+E+ TP +
Sbjct: 19 IKKLLKQGERIDGRKLDEYRPIEVFLNPIPKAEGSAAVKLGNTFVITGVKLEIGTPYSDR 78
Query: 88 PDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAW 147
P+EG + + P+ SP PG P E A A+ + ++ I L++L ++ GK W
Sbjct: 79 PNEGVLQVHAEFVPLASPTFEPGPPDENAIETARVIDRSLREPKAIRLEDLVVIPGKKVW 138
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIP-TVSLDDGKIVMLPEEQKEENSEKEPV 206
+++ D+Y +D G + D +LS + A + +IP VS++D +V+ K P+
Sbjct: 139 LIFNDLYLIDHYGNIIDTGMLSTMLALNMTKIPRIVSIEDENVVI----DKTVKEAPLPL 194
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
N +TLG I + +EE ++++ +T +D +N++V + K G
Sbjct: 195 NLNVVTVTLGIIDDIIIVDP---------NIDEELVVDSRITFAIDETNRIVGIQKMGMK 245
Query: 267 VLAYTSAVQDCIALTRQRVKELHQILEEAISG 298
+ + + + ++ ELH +L E ++
Sbjct: 246 GIK-PKMIDQLVDIALKKASELHGLLREVLNN 276
>gi|325184014|emb|CCA18471.1| exosome complex exonuclease RRP45like protein putati [Albugo
laibachii Nc14]
Length = 473
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 133/271 (49%), Gaps = 24/271 (8%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSI 95
IR D R + + R +I +S ++L +G+T +LA + E++TP + P EG +
Sbjct: 28 IRTDGREMMQQRKISIQFRRNSSQSQASLC-LGNTRVLANVHGEIVTPFPDRPTEGFFNT 86
Query: 96 DFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYC 155
+ P+ S GRP+ + +AK + +I + + L+++ G+ W +Y +++
Sbjct: 87 SVDLSPMASQNFETGRPSSLSIELAKMIDRSIRDCRAFDTEALAILAGEKVWAIYCEVHV 146
Query: 156 LDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTL 215
+D DG L DA ++++AA + + P +SL E QKE K + L+L
Sbjct: 147 IDHDGNLTDAVQIASIAALMHFRRPDLSL---------ELQKENEDIKNFEAYDTIPLSL 197
Query: 216 GGIPFSLTCI-------LHKN------YILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
IP S++ + KN DPTS EE +M ++T + +S +L +++K
Sbjct: 198 HHIPLSVSFSYMLTRDNMDKNDGSSSPLFFMDPTSREEQVMNGVITFIFNSFRELCAVHK 257
Query: 263 PGGAVLAYTSAVQDCIALTRQRVKELHQILE 293
GGA ++ T + C + RV EL +L+
Sbjct: 258 NGGAPIS-TEDILRCAQIAAARVGELVSVLK 287
>gi|52549527|gb|AAU83376.1| 3'-5' exoribonuclease [uncultured archaeon GZfos27G5]
Length = 257
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 115/232 (49%), Gaps = 21/232 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R R+ ++ + A+GSA KIG T +L +K+E+ TP ++PD+G + +
Sbjct: 23 REDGRGFHEYRDISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTPFPDTPDKGVIITN 82
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ SP G P E + +A+ + I S I+L +L + G+ WMV++DI+ L
Sbjct: 83 AELVPLASPKFESGPPNENSIQLARVVDRGIRGSETIDLDKLCIEEGEKVWMVFIDIHVL 142
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D +G L DAA L A+ + NL+IP +E+ + E L +
Sbjct: 143 DDNGNLVDAAALGAITSLLNLRIP--------------------NERYGLTGEN-TLPMR 181
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
P + T + + IL DP+ +E + + VTV+ ++ L + K G + L
Sbjct: 182 DTPVAATMVEIEGNILVDPSFDEGNAAASSVTVISNADGTLSGMQKSGSSGL 233
>gi|326469540|gb|EGD93549.1| 3' exoribonuclease [Trichophyton tonsurans CBS 112818]
gi|326478933|gb|EGE02943.1| exosome complex exonuclease RRP45 [Trichophyton equinum CBS 127.97]
Length = 292
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 138/285 (48%), Gaps = 21/285 (7%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++ + E+ R F L L +++R D R + R ++ G G+ ++G
Sbjct: 1 MARDAEISVNERAFILEA----LHKNVRLDGRRFDQLRPVELTFG---EEHGNVKVQLGK 53
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T +L I E+ TP E +G ++ + + P GRP+E +++ L +
Sbjct: 54 TAVLVRISAELTTPRPERDCDGIFTVVVELNDMALPGYETGRPSELEVSLSRTLDKIVRR 113
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189
S ++ + L + G+ W V DI+ LD DG L DA+ L+ +A + ++P ++ DG++
Sbjct: 114 SNALDTESLCIAKGRICWNVRADIHILDCDGGLIDASCLAIMAGLLHFRLPESTVRDGEV 173
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLV 247
+ E EK PV +L L IP S+T L+ +L D T+ EE++ E +
Sbjct: 174 TVFTTE------EKVPV-----QLNLTKIPLSVTFNLYDEGKIMLLDATTSEEAVSEGSL 222
Query: 248 TVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
V LD + ++ KP GA + V +C L ++V+EL+++L
Sbjct: 223 VVALDKTGEIALYSKPDGAPADPVNMV-NCSTLALEKVRELNKLL 266
>gi|302654106|ref|XP_003018865.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Trichophyton verrucosum HKI 0517]
gi|291182546|gb|EFE38220.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Trichophyton verrucosum HKI 0517]
Length = 292
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 138/285 (48%), Gaps = 21/285 (7%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++ + E+ R F L L +++R D R + R ++ G G+ ++G
Sbjct: 1 MARDAEISVNERAFILEA----LHKNVRLDGRRFDQLRPVELTFG---EEHGNVKVQLGK 53
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T +L I E+ TP E +G ++ + + P GRP+E +++ L +
Sbjct: 54 TAVLVRISAELTTPRPERDCDGIFTVVVELNDMALPGYETGRPSELEVSLSRTLDKIVRR 113
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189
S ++ + L + G+ W V DI+ LD DG L DA+ L+ +A + ++P ++ DG++
Sbjct: 114 SNALDTESLCIAKGRICWNVRADIHILDCDGGLIDASCLAIMAGLLHFRLPESTVRDGEV 173
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLV 247
+ E EK PV +L L IP S+T L+ +L D T+ EE++ E +
Sbjct: 174 TVFTTE------EKVPV-----QLNLTKIPLSVTFNLYDEGKIMLLDATTSEEAVSEGSL 222
Query: 248 TVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
V LD + ++ KP GA + V +C L ++V+EL+++L
Sbjct: 223 VVALDKTGEIALYSKPDGAPADPVNMV-NCSTLALEKVRELNKLL 266
>gi|327303316|ref|XP_003236350.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
gi|326461692|gb|EGD87145.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
Length = 292
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 137/285 (48%), Gaps = 21/285 (7%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++ + E+ R F L ++L R D R + R ++ G G+ ++G
Sbjct: 1 MARDAEISVNERAFILEALHKNL----RLDGRRFDQLRPVELTFG---DEHGNVKVQLGK 53
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T +L I E+ TP E +G ++ + + P GRP+E +++ L +
Sbjct: 54 TAVLVRISAELTTPRPERDCDGIFTVVVELNDMALPGYETGRPSELEVSLSRTLDKIVRR 113
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189
S ++ + L + G+ W + DI+ LD DG L DA+ L+ +A + ++P ++ DG++
Sbjct: 114 SNALDTESLCIAKGRICWNIRADIHILDCDGGLIDASCLAIMAGLLHFRLPESTVRDGEV 173
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLV 247
+ E EK PV +L L IP S+T L+ +L D T+ EE++ E +
Sbjct: 174 TVFTTE------EKVPV-----QLNLTKIPLSVTFNLYDEGKIMLLDATTSEEAVSEGSL 222
Query: 248 TVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
V LD + ++ KP GA + V +C L ++V+EL+++L
Sbjct: 223 VVALDKTGEIALYSKPDGAPADPVNMV-NCSTLALEKVRELNKLL 266
>gi|91772268|ref|YP_564960.1| exosome complex RNA-binding protein Rrp42 [Methanococcoides
burtonii DSM 6242]
gi|91711283|gb|ABE51210.1| Archaeal exosome complex exoribonuclease [Methanococcoides burtonii
DSM 6242]
Length = 259
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 110/233 (47%), Gaps = 21/233 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R R+ I + A+GSA +G T +L +K++V +P +S D+G +
Sbjct: 22 REDGRGFDETRDLIIETNVIDKAEGSAKVLLGDTQVLVGVKLQVGSPFADSADKGVIITS 81
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ PI SP G P E A +A+ + I SG I+L +L + G+ W+V++D++ L
Sbjct: 82 MELNPIASPNFEAGPPREKAIEMARVVDRGIRESGAIDLNKLCITEGEEVWIVFIDVHVL 141
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
+ G L DAA L A+AA IP G+ V LP +
Sbjct: 142 NDSGNLLDAASLGAIAALMTATIPGEREGRGEDVKLPIRE-------------------- 181
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
+P SL+ I ++ D T+ EES+ + +T+V + + ++ K G L+
Sbjct: 182 -MPVSLSFIDIGGELVIDATNNEESVSDLRLTIVTNQDGSICAMQKSGPGTLS 233
>gi|408404984|ref|YP_006862967.1| exosome complex exonuclease [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|408365580|gb|AFU59310.1| putative exosome complex exonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 274
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 109/218 (50%), Gaps = 15/218 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
LA R D R + R I + + A+GSA K+G + ++A IK+E P ++G
Sbjct: 23 LARGKRLDGRDFNEQRPLEIEVDVIKKANGSARVKLGDSEVIAGIKVETGEPFEGLEEKG 82
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ + + P SP + PG P E +A+ + + S MI+L +L LV GK + +++
Sbjct: 83 ALIVTAEVLPTASPYIEPGPPDEEVVELARVVDRGVRESEMIDLDQLVLVPGKIVYTIFV 142
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D ++ADG LFDA + VA+ ++P + + D K+V + R
Sbjct: 143 DCSVINADGNLFDATSYAVVASLLTAKLPILEMKDDKVVD---------------TGQTR 187
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTV 249
+ + IP S+T +Y++ DPT+EEE M+ +T+
Sbjct: 188 PMPVTTIPVSITAARIGDYVVIDPTAEEEGCMDARITI 225
>gi|291229746|ref|XP_002734834.1| PREDICTED: exosome component 9-like [Saccoglossus kowalevskii]
Length = 421
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 127/262 (48%), Gaps = 17/262 (6%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R RN IS G G ++G T +L + E++ P P EG + +
Sbjct: 53 RVDGRQAYDFRNAKISFGQDL---GHCEVQLGDTRVLCQVSCEIIEPRQNRPTEGGLYFN 109
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ SPL PGR +E + + L T+ S I+ + L +V G+ W + +DI+ L
Sbjct: 110 VELSPMASPLFEPGRQSEFGIEIIRFLEKTVRDSRAIDTESLCIVAGEKVWEIRIDIHVL 169
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
+ DG + D ++AV A S+ + P VS V+ + Q ++++PV+ L++
Sbjct: 170 NHDGNIMDCVTMAAVTALSHFRRPDVS------VVGEDVQVHSAADRDPVS-----LSVH 218
Query: 217 GIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAV 274
+P S+T Y+L DPT EE +M+ + + ++ +L + + G +L +
Sbjct: 219 HLPVSVTFAYFDEGKYLLVDPTEREECVMDGSMILSMNIHRELCTAHMSGDMLLVKDQII 278
Query: 275 QDCIALTRQRVKELHQILEEAI 296
+ C +V EL ++++A+
Sbjct: 279 R-CTQTAIVKVSELTDLIKKAL 299
>gi|449442545|ref|XP_004139042.1| PREDICTED: exosome complex component RRP45-like [Cucumis sativus]
Length = 452
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 141/275 (51%), Gaps = 18/275 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ E L +R D R RN TI+ G DGS+ ++G T ++ + +++ P
Sbjct: 17 KFIETALLSDLRVDGRGPFDYRNLTINFG---KDDGSSEVQLGQTHVMGFVTAQLVQPYR 73
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P+EG +SI P+ P PGRP E+A + + + + S ++ + L +V GK+
Sbjct: 74 DRPNEGTLSIYTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVDTESLCVVSGKS 133
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL--DDGKIVMLPEEQKEENSEK 203
W + +D++ LD G L DAA ++A+AA S + P SL DDG+ V++
Sbjct: 134 VWAIRVDLHILDNGGNLVDAANVAALAALSTFRRPECSLSGDDGQEVIV----------H 183
Query: 204 EPVNKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
P +E L + +P ++T + + ++ DPT EE++M +TV L+++N + ++
Sbjct: 184 PPEVREPLPLIIHHLPIAVTFAFFRSESILVIDPTHCEEAVMGGRMTVTLNANNDVCAIQ 243
Query: 262 KPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
K GG + S + C+ + + ++ ++ A+
Sbjct: 244 KAGGEGV-LKSVIMQCLRIASVKAGDITTKIKNAV 277
>gi|363543527|ref|NP_001241774.1| exosome complex exonuclease RRP42 [Zea mays]
gi|195636336|gb|ACG37636.1| exosome complex exonuclease RRP42 [Zea mays]
Length = 287
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 138/275 (50%), Gaps = 16/275 (5%)
Query: 26 RYFERH-LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
++F R +A+ +R D R + R+ ++ G + A+GSA ++G+T ++A++K E+ PS
Sbjct: 9 KHFIRGGIAQDVRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATEIIASVKAELGKPS 68
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAE---AAPVVAKQ---LSDTISSSGMINLKEL 138
+ PD+G V+I P PL GR +E A V+ Q L + I+L L
Sbjct: 69 ILHPDKGKVAIFVDCSPTAEPLFE-GRGSEELSAELSVSLQRCLLGGKSGAGAAIDLSSL 127
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+V GK W +Y+D + +DG L DA ++ A S+ IP V++ +
Sbjct: 128 IVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVS-------VSAASD 180
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLV 258
E E + ++E + G+P +T + + D TSEEES M + V+V ++ Q+
Sbjct: 181 EEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRHGQIC 240
Query: 259 SLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILE 293
L K GGA L S + D I++ + ++ +L+
Sbjct: 241 GLTKRGGAGLD-PSVIFDMISVAKHVSQQFISLLD 274
>gi|194707850|gb|ACF88009.1| unknown [Zea mays]
gi|223975603|gb|ACN31989.1| unknown [Zea mays]
gi|413935071|gb|AFW69622.1| exosome complex exonuclease RRP42 isoform 1 [Zea mays]
gi|413935072|gb|AFW69623.1| exosome complex exonuclease RRP42 isoform 2 [Zea mays]
gi|413935073|gb|AFW69624.1| exosome complex exonuclease RRP42 isoform 3 [Zea mays]
Length = 287
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 138/275 (50%), Gaps = 16/275 (5%)
Query: 26 RYFERH-LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
++F R +A+ +R D R + R+ ++ G + A+GSA ++G+T ++A++K E+ PS
Sbjct: 9 KHFIRGGIAQDVRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATEIIASVKAELGKPS 68
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAE---AAPVVAKQ---LSDTISSSGMINLKEL 138
+ PD+G V+I P PL GR +E A V+ Q L + I+L L
Sbjct: 69 ILHPDKGKVAIFVDCSPTAEPLFE-GRGSEELSAELSVSLQRCLLGGKSGAGAAIDLSSL 127
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+V GK W +Y+D + +DG L DA ++ A S+ IP V++ +
Sbjct: 128 IVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVS-------VSAASD 180
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLV 258
E E + ++E + G+P +T + + D TSEEES M + V+V ++ Q+
Sbjct: 181 EEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRHGQIC 240
Query: 259 SLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILE 293
L K GGA L S + D I++ + ++ +L+
Sbjct: 241 GLTKRGGAGLD-PSVIFDMISVAKHVSQQFISLLD 274
>gi|195620544|gb|ACG32102.1| exosome complex exonuclease RRP42 [Zea mays]
gi|413935080|gb|AFW69631.1| exosome complex exonuclease RRP42 isoform 1 [Zea mays]
gi|413935081|gb|AFW69632.1| exosome complex exonuclease RRP42 isoform 2 [Zea mays]
gi|413935082|gb|AFW69633.1| exosome complex exonuclease RRP42 isoform 3 [Zea mays]
gi|413935083|gb|AFW69634.1| exosome complex exonuclease RRP42 isoform 4 [Zea mays]
Length = 287
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 138/275 (50%), Gaps = 16/275 (5%)
Query: 26 RYFERH-LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
++F R +A+ +R D R + R+ ++ G + A+GSA ++G+T ++A++K E+ PS
Sbjct: 9 KHFIRGGIAQDLRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATDIIASVKAELGKPS 68
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAE---AAPVVAKQ---LSDTISSSGMINLKEL 138
+ PD+G V+I P PL GR +E A V+ Q L + I+L L
Sbjct: 69 ILHPDKGKVAIFVDCSPTAEPLFE-GRGSEELSAELSVSLQRCLLGGKSGAGAAIDLSSL 127
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+V GK W +Y+D + +DG L DA ++ A S+ IP V++ +
Sbjct: 128 IVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVS-------VSAASD 180
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLV 258
E E + ++E + G+P +T + + D TSEEES M + V+V ++ Q+
Sbjct: 181 EEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRHGQIC 240
Query: 259 SLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILE 293
L K GGA L S + D I++ + ++ +L+
Sbjct: 241 GLTKRGGAGLD-PSVIFDMISVAKHVSQQFISLLD 274
>gi|444706212|gb|ELW47562.1| Exosome complex component RRP43 [Tupaia chinensis]
Length = 138
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 82/131 (62%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ PD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCHPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
+E P ++PD+G + + +PP+CS R G P E V ++ ++D I +S +I ++
Sbjct: 64 VEFAAPPTDTPDKGYIVPNVDLPPLCSSRFRSGPPGEEDQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWM 148
L + GK A +
Sbjct: 124 LRISPGKLACL 134
>gi|326493068|dbj|BAJ84995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 337
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 139/266 (52%), Gaps = 18/266 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ E+ L +R D R R I+ G DGSA ++G T ++ + +++ P +
Sbjct: 15 FIEQALQSDLRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTAQLVQPYKD 71
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P+EG ++I P+ P PGRP EAA + + + + S ++++ L +V GK
Sbjct: 72 RPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGKHV 131
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDGKIVMLPEEQKEENSEKE 204
W V +D++ LD +G L DAA ++A+AA S + P TV DDG+ V + ++ ++
Sbjct: 132 WSVRVDLHILDNEGNLIDAANIAALAALSTFRRPECTVGGDDGQQVTV-----HDSEVRD 186
Query: 205 PVNKEKRKLTLGGIPFSLTCILH--KNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
P+ LT+ +P ++T N ++ DPT +EE++M +T ++S+ + ++ K
Sbjct: 187 PL-----PLTIHHLPIAVTFAYFGDGNIMVIDPTYKEEAVMGGRMTATINSNGDVCAIQK 241
Query: 263 PGGAVLAYTSAVQDCIALTRQRVKEL 288
GG + +S + C+ + +V ++
Sbjct: 242 AGGEGV-MSSVIMQCLRIASVKVADI 266
>gi|452989947|gb|EME89702.1| hypothetical protein MYCFIDRAFT_32551, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 336
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 149/326 (45%), Gaps = 60/326 (18%)
Query: 17 DAFRRLFPLRYFERHLA--ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLA 74
D F +L P + HL ES+RP R R TI+ G+++ ++GSA+ ++G T ++
Sbjct: 20 DTFAKLTPGPFLLAHLTRPESVRPSGRRPHEFRTATINTGSLSHSNGSAVVRLGDTAVVC 79
Query: 75 AIKMEVMTPS--LESPDEGCVS--IDFHMPPI---------CSPLVRPGRPAEA-APVVA 120
++ E++ S PD+ S I H+ I CSP PG P + A ++
Sbjct: 80 GVRSELLLASDVPHPPDQHATSSAIVEHLALIVPNVELSTGCSPSHLPGNPPTSLAQSLS 139
Query: 121 KQLSDTISSSGMINLKELSL-----------------VGGKAAWMVYLDIYCLDADGALF 163
++S ++ S I+L +LS+ + KA W +YLDI CL DG F
Sbjct: 140 HRVSSLLNGSNAIDLADLSIKHTEPQTEHHLPDEEPKIVTKAYWALYLDILCLALDGNAF 199
Query: 164 DAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGI----- 218
DAA L+ AA + +P D + ++L P E +L L G+
Sbjct: 200 DAAWLAVTAALQDTILPRAWWDPDREMVL----------CSPSASESSRLRLSGLCVAST 249
Query: 219 --PFSLTCILH-----KNYILADPTSEEESIMETLVTVVL----DSSNQLVSLYKPGGAV 267
FS L +++ILADP + EE + + VTVVL +S +V + + GG V
Sbjct: 250 FAAFSTASPLKQRHAAQSWILADPDAFEEDLCDETVTVVLSPASESGRSIVRIERSGGGV 309
Query: 268 LAYTSAVQDCIALTRQRVKELHQILE 293
+A +Q C+ R ++L L+
Sbjct: 310 IA-KDLMQQCVQRAENRCQQLEASLQ 334
>gi|320101498|ref|YP_004177090.1| ribosomal RNA-processing protein RRP42 [Desulfurococcus mucosus DSM
2162]
gi|319753850|gb|ADV65608.1| ribosomal RNA-processing protein RRP42 [Desulfurococcus mucosus DSM
2162]
Length = 286
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 130/259 (50%), Gaps = 16/259 (6%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L R + + + A GS+L ++G T ++A +K+E+ P + P+EG + +
Sbjct: 28 RIDGRGLYDYRPLEVVLNPIQKASGSSLVRLGGTQVIAGVKLELGEPFPDRPNEGVLQVH 87
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
P+ SP PG P E + +A+ + ++ + L L + GK W+V+ DIY +
Sbjct: 88 AEFVPLASPSFEPGPPDENSIEIARIIDRSLREPKAVKLDTLVVEPGKVVWVVFDDIYLV 147
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G + DA++++++ A + +IP + K E + K+ L +
Sbjct: 148 DHQGNITDASMMASMLALATARIPGLV-------------KTETGYRVDNTKQTGPLPIN 194
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTS---A 273
+ ++T ++ + I+ DP+ EEE+++++ +T+ +D + ++ + K G + + A
Sbjct: 195 TLVVTVTMGIYGDTIVVDPSLEEEAVLDSFLTIAVDEAGRICGVQKRGMKGFSRNTLENA 254
Query: 274 VQDCIALTRQRVKELHQIL 292
V ++ R ++ L +IL
Sbjct: 255 VNTALSKGRDLIELLRKIL 273
>gi|449526860|ref|XP_004170431.1| PREDICTED: exosome complex component RRP45-like [Cucumis sativus]
Length = 454
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 134/259 (51%), Gaps = 18/259 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ E L +R D R RN TI+ G DGS+ ++G T ++ + +++ P
Sbjct: 17 KFIETALLSDLRVDGRGPFDYRNLTINFG---KDDGSSEVQLGQTHVMGFVTAQLVQPYR 73
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P+EG +SI P+ P PGRP E+A + + + + S ++ + L +V GK+
Sbjct: 74 DRPNEGTLSIYTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVDTESLCVVSGKS 133
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL--DDGKIVMLPEEQKEENSEK 203
W + +D++ LD G L DAA ++A+AA S + P SL DDG+ V++
Sbjct: 134 VWAIRVDLHILDNGGNLVDAANVAALAALSTFRRPECSLSGDDGQEVIV----------H 183
Query: 204 EPVNKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
P +E L + +P ++T + + ++ DPT EE++M +TV L+++N + ++
Sbjct: 184 PPEVREPLPLIIHHLPIAVTFAFFRSESILVIDPTHCEEAVMGGRMTVTLNANNDVCAIQ 243
Query: 262 KPGGAVLAYTSAVQDCIAL 280
K GG + S + C+ +
Sbjct: 244 KAGGEGV-LKSVIMQCLRI 261
>gi|325959905|ref|YP_004291371.1| 3' exoribonuclease [Methanobacterium sp. AL-21]
gi|325331337|gb|ADZ10399.1| 3' exoribonuclease [Methanobacterium sp. AL-21]
Length = 263
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 128/256 (50%), Gaps = 15/256 (5%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R+ R ++ G + A+GSA KIG+T ++ K ++ TP ++P+ G + +
Sbjct: 22 RTDGRAFDEYREISLEAGVIEKAEGSARVKIGNTQIIIGAKPQIGTPFGDTPNVGVLMTN 81
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ +P G P E + +++ I +++L++L +V G+ WM++LD++ +
Sbjct: 82 TELLPMAAPNFESGPPDENSVELSRVTDRCIREGEVVDLEKLCIVPGEKVWMIFLDLHVV 141
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG L DAA+L +VAA N ++P + D ++V+ +N P+N T
Sbjct: 142 DYDGNLMDAAVLGSVAALMNTRLPEAKIIDDEVVL-----DYDNLIPLPINDTALMSTFA 196
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQD 276
I L + DP+ EEE +M +++ + + ++ K G L ++
Sbjct: 197 KIGEEL---------IIDPSLEEEEVMGARLSIGITKDGNICAMQKGGEKTLTQEEVLK- 246
Query: 277 CIALTRQRVKELHQIL 292
+++ + + EL ++L
Sbjct: 247 AVSIAKIKTAELRKLL 262
>gi|389852856|ref|YP_006355090.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. ST04]
gi|388250162|gb|AFK23015.1| putative exosome complex RNA-binding protein Rrp42 [Pyrococcus sp.
ST04]
Length = 266
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 126/236 (53%), Gaps = 14/236 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D R R I +G + A+GSAL K+GST +L IK + P ++P+ G
Sbjct: 9 LKEGKRIDDRGFEDYRPIEIEVGLIEKAEGSALVKLGSTQVLVGIKTTLGEPFPDTPNMG 68
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P+ SP PG P E A +A+ + I S +NL+++ +V GK +V++
Sbjct: 69 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESRALNLEKMVIVPGKIVRVVFI 128
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ LD DG L DA ++A+AA N ++P V ++ E+ E EKEP+ EK
Sbjct: 129 DVHVLDHDGNLMDAIGIAAIAALMNARVPKVRYNEET------EEVEILEEKEPLPVEK- 181
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP-GGA 266
IP +T N ++ DP+ EEE +M+ +T+ D + + ++ K GGA
Sbjct: 182 ------IPVPVTFAKIGNTLVVDPSLEEEQVMDGRLTITTDETGHISAVQKSEGGA 231
>gi|357122793|ref|XP_003563099.1| PREDICTED: exosome complex component RRP42-like [Brachypodium
distachyon]
Length = 286
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 141/282 (50%), Gaps = 16/282 (5%)
Query: 26 RYFERH-LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
++F R +A+ +R D R+ + R T+ G + A+GSA ++G+T ++A++K E+ P+
Sbjct: 9 KHFIRGGIAQDLRADGRTKLQFRPVTVETGVIPQANGSARVRLGATEVIASVKAELGKPT 68
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAE---AAPVVAKQ---LSDTISSSGMINLKEL 138
+ PD+G VSI P +P+ GR +E A VA Q L + I+L L
Sbjct: 69 VLHPDKGKVSIYVDCSPTAAPIFE-GRGSEDLSAELSVALQRCLLGGKSGAGAAIDLSSL 127
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
++ GKA W +Y+D + +DG L DA + A S+ IP V+ V L E
Sbjct: 128 IVLEGKACWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVN------VSLNAETDG 181
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLV 258
E E + ++E + +P +T + + D TSEEES M + V+V ++ Q+
Sbjct: 182 E-PEVDVSDEEFLQFDTSSVPVIVTLTKVGKHYIVDATSEEESQMSSAVSVSVNRRGQIC 240
Query: 259 SLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L K GGA L T + D I++ + + +L+ I+ E
Sbjct: 241 GLTKRGGAGLDPT-VIFDMISVAKHVSQRFISLLDSEIAAAE 281
>gi|326498189|dbj|BAJ94957.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 135/258 (52%), Gaps = 18/258 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ E+ L +R D R R I+ G DGSA ++G T ++ + +++ P +
Sbjct: 15 FIEQALQSDLRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTAQLVQPYKD 71
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P+EG ++I P+ P PGRP EAA + + + + S ++++ L +V GK
Sbjct: 72 RPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGKHV 131
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDGKIVMLPEEQKEENSEKE 204
W V +D++ LD +G L DAA ++A+AA S + P TV DDG+ V + ++ ++
Sbjct: 132 WSVRVDLHILDNEGNLIDAANIAALAALSTFRRPECTVGGDDGQQVTV-----HDSEVRD 186
Query: 205 PVNKEKRKLTLGGIPFSLTCILH--KNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
P+ LT+ +P ++T N ++ DPT +EE++M +T ++S+ + ++ K
Sbjct: 187 PL-----PLTIHHLPIAVTFAYFGDGNIMVIDPTYKEEAVMGGRMTATINSNGDVCAIQK 241
Query: 263 PGGAVLAYTSAVQDCIAL 280
GG + +S + C+ +
Sbjct: 242 AGGEGV-MSSVIMQCLRI 258
>gi|225708190|gb|ACO09941.1| Exosome complex exonuclease RRP45 [Osmerus mordax]
Length = 398
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 132/280 (47%), Gaps = 22/280 (7%)
Query: 24 PLRYFERH-----LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
PL ER + E R D R + R IS G + G +G T ++ +
Sbjct: 5 PLSNCERQFLLKAIEEKKRLDGRQIYDYRTIKISFG---TDYGCCFVDLGKTRVMTQVSC 61
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E++ P P +G + + + P+ SP GR +E + +QL + +S + + L
Sbjct: 62 ELVVPKDNRPSDGIMFFNVELSPMASPGFEVGRQSELLVKLNRQLERCLRNSKCFDTESL 121
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+V G+ W + +D++ L+ DG L DAA ++A+ A S+ + P V + ++ + E
Sbjct: 122 CVVSGEKVWQIRVDVHVLNHDGNLMDAASVAAITALSHFRRPDVGIHGEEVTVYGSE--- 178
Query: 199 ENSEKEPVNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
E++P+ L++ +P S + Y+L DP EE +M+ L+ + ++ +
Sbjct: 179 ---ERDPI-----PLSIYHMPICVSFSFFQQGTYLLVDPCEREERVMDGLLMIAMNKHRE 230
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+ S+ GG +L ++ C + +V E+ +++ +A+
Sbjct: 231 ICSIQSSGGIMLLKEQVLR-CSKIASVKVTEITELIHKAL 269
>gi|300123363|emb|CBK24636.2| unnamed protein product [Blastocystis hominis]
Length = 304
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 147/291 (50%), Gaps = 24/291 (8%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTML 73
M+ + F+++ P ++ ++L +RPD R + AR IS G + +ADGS+L +IG T ++
Sbjct: 22 MDAEVFKKIQPKAFYGQYLENEVRPDGRGIDDARGILISYGHIGTADGSSLVRIGETGVI 81
Query: 74 AAIKMEVMTPSLESPD-EGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGM 132
+K+ P+ ES D +G + ++ + +C+ G + + A+ L I +
Sbjct: 82 CGLKLS-FDPAKESSDTKGSLDVNIVLSSLCNADFFYGEQDKQSKYYAQVLK-QIFQRYV 139
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVML 192
++L EL V+ I C+D +G++ DA L+ ++A L++P +SL + ++V
Sbjct: 140 LDLNELYSAEASTVICVHASIICIDYEGSILDACCLALLSALLTLRVPKLSLKEKELVF- 198
Query: 193 PEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLD 252
+ P LT+ P ++T L+ + + DP + EE +++ VTVVL
Sbjct: 199 ------DYDAAYP-------LTILDYPVAVTFGLYSEFEVMDPDAFEEGLLDDTVTVVLG 245
Query: 253 SSNQLVSLYKPGGAVLAYTSAVQDCIALT-RQRVKELHQILEEAISGMEID 302
+N+ +S+ KPGG + D + +T R + + + + E++ + D
Sbjct: 246 GNNKTISIIKPGG------KRISDSLVMTLRGKAAKRYGTVYESVEKFKCD 290
>gi|242083100|ref|XP_002441975.1| hypothetical protein SORBIDRAFT_08g006250 [Sorghum bicolor]
gi|241942668|gb|EES15813.1| hypothetical protein SORBIDRAFT_08g006250 [Sorghum bicolor]
Length = 287
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 133/274 (48%), Gaps = 15/274 (5%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
+ +A+ IR D R + R ++ G + A+GSA ++G T ++A++K E+ PS+
Sbjct: 11 HFIHGGIAQDIRTDGRRRLQFRALSVQTGVIPQANGSARVRLGVTEIIASVKAELGKPSI 70
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGR-----PAEAAPVVAKQLSDTISSSG-MINLKELS 139
PD+G VSI P P+ GR AE + + + L S SG I+L L
Sbjct: 71 LHPDKGKVSIFVDCSPTAEPMFE-GRGSEELSAELSAALQRCLLGGKSGSGAAIDLSSLI 129
Query: 140 LVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEE 199
+V GK W +Y+D + +DG L DA + A S+ IP V++ + EE+ E
Sbjct: 130 VVEGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNV---SVSAASEEEPEV 186
Query: 200 NSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVS 259
N E E + G+P +T + + D TSEEES + V+V ++ Q+
Sbjct: 187 NVSDE----EFLQFDTSGVPVIITLTKVGRHYIVDATSEEESQTSSAVSVSVNRHGQICG 242
Query: 260 LYKPGGAVLAYTSAVQDCIALTRQRVKELHQILE 293
L K GGA L S + D +++ + ++ +L+
Sbjct: 243 LSKRGGAGLD-PSVILDMLSVAKHVSQQFISLLD 275
>gi|167044982|gb|ABZ09647.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8G2]
Length = 272
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 125/267 (46%), Gaps = 15/267 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D R+L R I G + A+GSA A++G T +++ IK++ P + D+G
Sbjct: 19 LQEGKRIDDRALDEPRPLVIDTGVIPHANGSARARLGDTEVVSGIKIQPDKPFPDMGDKG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ P+ P G P +A+ + I SGMI+L +L L K+ V+
Sbjct: 79 IFICTAEILPLAHPSAETGPPQPNVIEIARVVDRGIRESGMIDLSQLVLQKDKSVIGVFA 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D D DG LFDA +AVAA +IP + D K V++ E+ + P+
Sbjct: 139 DNVVTDHDGNLFDACSYAAVAAIITSKIPKWEMKDDKPVLI-----EDQASDTPITT--- 190
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
IP S+T L +I+ DP +E ++ +T+ +S +V+L K G +
Sbjct: 191 ------IPISVTMGLMGEFIIVDPNLDEWECLDARITITTNSDGNIVALQKGGSDGFSLE 244
Query: 272 SAVQDCIALTRQRVKELHQILEEAISG 298
V+ C L+ K++ I+++A G
Sbjct: 245 QLVK-CSELSIAIGKKIRDIIKQATEG 270
>gi|428170337|gb|EKX39263.1| hypothetical protein GUITHDRAFT_76548 [Guillardia theta CCMP2712]
Length = 277
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 113/229 (49%), Gaps = 21/229 (9%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + IR DARS AR+ +I+ G +SADGSA+ K+G T + A I + V+ PS EG
Sbjct: 3 LQQDIRLDARSFLHARDISINRGCFSSADGSAMVKVGRTVVAAGINLSVVCPSASRGAEG 62
Query: 92 CVSIDFHMPPICSPLVRPGRPAEA---APVVAKQLSDTISSSGMINLKELSLVGGKAAWM 148
V + P CS + R +A A ++ L+ I+ + +++L L + A W+
Sbjct: 63 IVRVTVEFGPACSSRFQHFRYRKANLKAQALSAHLTRVINEARVVDLSALVMKEDAAVWV 122
Query: 149 VYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNK 208
V + + CL+ G L DA++L+ ++A + ++P V + +EN V
Sbjct: 123 VDVHVTCLNHGGNLEDASMLAVLSALVDTKLPAVEM-------------KENDVMAEVEG 169
Query: 209 EKRKLTLGGIPFSLTCILHKN-----YILADPTSEEESIMETLVTVVLD 252
+ L + P S T L +L DPT EEE ++V+V+LD
Sbjct: 170 DSVPLVIQSFPISHTFALFDFGDVPVKVLVDPTDEEEKHCHSIVSVILD 218
>gi|352682029|ref|YP_004892553.1| exosome complex exonuclease 2 [Thermoproteus tenax Kra 1]
gi|350274828|emb|CCC81474.1| exosome complex exonuclease 2, aRrp42 (RNase PH domain)
[Thermoproteus tenax Kra 1]
Length = 274
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 133/267 (49%), Gaps = 19/267 (7%)
Query: 28 FERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLES 87
R ++ R D R L + R+ TI +ADGSA +G T ++A +K+ + P ++
Sbjct: 20 IRRLISSGNRLDGRPLDQYRDITIRTNVTNTADGSAEVLLGRTRVVAGVKIGLGNPFPDA 79
Query: 88 PDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAW 147
PDEG + ++ + P SP G P E A +A+ + + SG I+ K L++ K +
Sbjct: 80 PDEGVLVVNAEVLPHASPYSEVGPPDETAIELARVVDRGLRHSGFIDFKRLAIDQSK-VY 138
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVN 207
+V+LD+Y L+ DG L DA+ L+AVAA + +PTV D+ L + N
Sbjct: 139 VVWLDLYVLNDDGNLVDASNLAAVAALRSTMLPTVVKDEAGAYKLDKN-----------N 187
Query: 208 KEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAV 267
+ L P S++ I+ DP EEE +++ +T+ + S + +VS+ K
Sbjct: 188 RTAMPSDLSKAPISVSLGKIDTRIIVDPILEEELSLDSRITITI-SQDNIVSIQK----T 242
Query: 268 LAYTS--AVQDCIALTRQRVKELHQIL 292
+ Y S ++ I L+ + + L QIL
Sbjct: 243 IGYFSEQELEQAIELSYKSKEFLKQIL 269
>gi|54400656|ref|NP_001006077.1| exosome complex exonuclease RRP45 [Danio rerio]
gi|53734430|gb|AAH83243.1| Exosome component 9 [Danio rerio]
gi|182889156|gb|AAI64713.1| Exosc9 protein [Danio rerio]
Length = 393
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 138/280 (49%), Gaps = 21/280 (7%)
Query: 21 RLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEV 80
RLF L+ + E R D R RN IS G + G + ++G T +L+ + E+
Sbjct: 11 RLFLLKA----IKEKKRLDGRQTYDYRNIKISFG---TDYGCCVVELGKTRVLSQVSCEL 63
Query: 81 MTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSL 140
+ P P EG V + + P+ SP P R +E + +QL + +S I+ + L +
Sbjct: 64 VPPKDSRPTEGIVFFNLELSPMASPAFEPNRQSELLVTLNRQLERCLRNSKCIDTESLCV 123
Query: 141 VGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEEN 200
V G+ W + +D++ L+ DG L DAA ++A++A S+ + P V++ + + E
Sbjct: 124 VSGEKVWQIRVDVHVLNHDGNLMDAASIAAISALSHFRRPDVAIQGRDVTVFGPE----- 178
Query: 201 SEKEPVNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLV 258
E++P+ L++ +P S L +++L DP EE + + L+ + ++ ++
Sbjct: 179 -ERDPI-----PLSIYHMPICVSFAFFLQGSFLLVDPCEREERVKDGLLVIAMNKHREIC 232
Query: 259 SLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISG 298
S+ GG +L ++ C + +V E+ +++ +A+
Sbjct: 233 SIQSSGGIMLLKEQVLR-CSKIASVKVSEITELINKALEN 271
>gi|115488270|ref|NP_001066622.1| Os12g0403800 [Oryza sativa Japonica Group]
gi|108862543|gb|ABA97522.2| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|113649129|dbj|BAF29641.1| Os12g0403800 [Oryza sativa Japonica Group]
gi|215693833|dbj|BAG89032.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641114|gb|EEE69246.1| hypothetical protein OsJ_28497 [Oryza sativa Japonica Group]
Length = 284
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 136/275 (49%), Gaps = 16/275 (5%)
Query: 26 RYFERH-LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
++F R +A+ +R D R + R ++ G + A+GSA ++G+T ++A +K E+ PS
Sbjct: 9 KHFIRGGIAQDLRTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATVKAELGKPS 68
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAE---AAPVVAKQ---LSDTISSSGMINLKEL 138
+ PD+G VSI P +P+ GR +E A VA Q L + I+L L
Sbjct: 69 ILHPDKGKVSIFVDCSPTAAPMFE-GRGSEEFSAELCVALQRCLLGGKSGAGAAIDLSSL 127
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
+V GK W +Y+D + +DG L DA + A S+ IP V++ + +E+ E
Sbjct: 128 IVVDGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNV---SLSATTDEEPE 184
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLV 258
N E E + +P +T + + D TSEEES M + V+V ++ Q+
Sbjct: 185 VNVSDE----EFLQFDTSSVPVIVTLTKVGKHYIVDATSEEESQMSSAVSVSVNRHGQIR 240
Query: 259 SLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILE 293
L K GGA L S + D I++ + ++ +L+
Sbjct: 241 GLTKRGGAGLD-PSVIFDMISVAKHVSRQFISVLD 274
>gi|167043480|gb|ABZ08177.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
microorganism HF4000_APKG2H5]
Length = 264
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 123/268 (45%), Gaps = 29/268 (10%)
Query: 31 HLAESIRPDARSLSR----ARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
HLAE D R R AR+T + +G + A+GSA ++G T + A +K+++M P +
Sbjct: 13 HLAELAENDERHSGRGRWEARDTELEIGVLPRAEGSARVRMGDTIVYAGVKLQIMVPYPD 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P++G + + P+ P PG P+ + + + + I SG I++ L L+ G+ A
Sbjct: 73 RPNQGGLMCSAEVRPVAGPNWEPGPPSPESIELGRVVDRGIRESGCIDVDGLCLIPGEKA 132
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W V LD++ + DG LFDA L+ +AA + M+PEE+ E + E P+
Sbjct: 133 WQVILDLFAISDDGNLFDAFALAGIAAM-------------RTAMIPEERFEISGEDRPL 179
Query: 207 NKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
N K + C HK + D EE + + + L + SL K G
Sbjct: 180 NISK---------TPIMCSYHKVGGRFVYDADGREELGGDERIHITLGDDGHVHSLQK-G 229
Query: 265 GAVLAYTSAVQDCIALTRQRVKELHQIL 292
+ S + + + R EL +++
Sbjct: 230 LRGIFTASEFTEIMEHAQSRCNELREMV 257
>gi|82752803|ref|XP_727434.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23483275|gb|EAA18999.1| similar to S. cerevisiae RRP45, putative [Plasmodium yoelii yoelii]
Length = 391
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 131/271 (48%), Gaps = 13/271 (4%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
+F +L +R D R+ +RN +I G+ IG+T ++ I E++ P
Sbjct: 9 NFFWCNLKNKLRLDGRNFEDSRNVSIYF---LGDYGNVEVSIGNTKVVCKITSEIVKPYD 65
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P+EG + I+ + + + + + + +S ++N + L ++ K
Sbjct: 66 KKPNEGIIKINLDVESFNTYNNDISKITDECLEIKNLIERIFKASNILNFESLCIIPYKK 125
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + ++I ++ DG L+D+ LSA +A + + V++D+ V++ EE E N
Sbjct: 126 VWCLLINITVIENDGNLYDSCYLSAYSALLHFRNNNVNIDNTGNVIIDEE--EVNYTSLS 183
Query: 206 VNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
V+ T F C L DP+ EE M + +++ ++ + L+S+ KPGG
Sbjct: 184 VHNSPILTTFAYFNFEEIC-------LIDPSLYEEEFMSSKLSIAINKNENLISILKPGG 236
Query: 266 AVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
++Y + +Q I L ++RVK + +ILE+A+
Sbjct: 237 LPISYDTILQG-IELAKKRVKSILKILEDAL 266
>gi|453088579|gb|EMF16619.1| ribosomal protein S5 domain 2-like protein [Mycosphaerella
populorum SO2202]
Length = 331
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 146/328 (44%), Gaps = 64/328 (19%)
Query: 17 DAFRRLFPLRYFERHLA--ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLA 74
D F L P + HL +S RP RS S R T++ G+++ ++GSAL ++G T ++
Sbjct: 15 DTFASLTPKPFLLAHLKAPKSTRPSGRSPSEFRKPTVNTGSLSHSNGSALVRVGDTAIVC 74
Query: 75 AIKMEVM-------TPSLESPD------EGCVSIDFHMPPICSPLVRPGRPAEAAPVVAK 121
++ E++ PS E+ D G + + + CSP PG P + VA+
Sbjct: 75 GVRAEILLASDVAKPPSDEAEDIDIIEQLGLLVPNLELSTGCSPAHMPGNPPSS---VAQ 131
Query: 122 QLSDTISS----SGMINLKELSL-----------------VGGKAAWMVYLDIYCLDADG 160
LS ISS SG +NL +L + V KA W +Y+DI CL DG
Sbjct: 132 SLSYRISSLLNDSGSVNLDDLRITYTQPAAEDDGLGEPGQVVTKAYWTLYVDILCLALDG 191
Query: 161 ALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPF 220
DAA L+ AA + ++P D + E+ P+ ++++L + +P
Sbjct: 192 NALDAAWLAVYAALRDTRLPGAHWDADR----------ESVVCSPLALDEKRLQIRDLPI 241
Query: 221 SLTCILH------------KNYILADPTSEEESIMETLVTVVLDSSNQ---LVSLYKPGG 265
T + +N+ILADP + EE + +++VVL S + L+S + G
Sbjct: 242 VSTFAIFTTASPLKLSTNPQNWILADPDTFEEELCNEVMSVVLQPSGEHGRLISRLESSG 301
Query: 266 AVLAYTSAVQDCIALTRQRVKELHQILE 293
+ C+ L R +EL +L
Sbjct: 302 GASIDRQTMYTCLQLAEARFQELSSLLH 329
>gi|367027518|ref|XP_003663043.1| hypothetical protein MYCTH_2304429 [Myceliophthora thermophila ATCC
42464]
gi|347010312|gb|AEO57798.1| hypothetical protein MYCTH_2304429 [Myceliophthora thermophila ATCC
42464]
Length = 293
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 128/270 (47%), Gaps = 20/270 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E++R D R L + R ++ G G A +G T +LA EV P + P +G
Sbjct: 19 LQENLRLDGRELDQYRPLELTFG---DQYGVADVTLGKTRVLAKATAEVTVPYADRPLDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + P+ SP RP E ++++ L T+ SG ++ + L LV G+ W V +
Sbjct: 76 IFTIATELSPMTSPAFEVNRPTETEVLLSRLLEKTVRRSGALDTESLCLVAGQKCWSVRV 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQKEENSEKEPVNKEK 210
D++ L DG L DAA + VAA + + P S++ G++ V P +E+EPV
Sbjct: 136 DVHVLSHDGNLTDAACFAVVAALRHFRKPDTSMEGGRLTVYTP-------AEREPV---- 184
Query: 211 RKLTLGGIPFSLTCILHKN---YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAV 267
L+ PF +T + + D T EE + TV L+ ++ + K GG
Sbjct: 185 -PLSWLHSPFCVTWSFFGDEGEIAVLDATWLEEQVRVGSCTVSLNKHGEICQIAKLGGTP 243
Query: 268 LAYTSAVQDCIALTRQRVKELHQILEEAIS 297
+ + +Q C ++ +VKE +L+ ++
Sbjct: 244 VDAVALLQ-CTSVALTKVKEFSDLLDRKLA 272
>gi|367050304|ref|XP_003655531.1| hypothetical protein THITE_2170949 [Thielavia terrestris NRRL 8126]
gi|347002795|gb|AEO69195.1| hypothetical protein THITE_2170949 [Thielavia terrestris NRRL 8126]
Length = 293
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 128/270 (47%), Gaps = 20/270 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E++R D R L + R +S G G A +G T +LA EV P + P +G
Sbjct: 19 LQENLRLDGRELDQYRPLDLSFG---DQYGVADVTLGRTRVLAKATAEVTVPYADRPLDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + P+ SP RP E ++++ L T+ SG ++ + L LV G+ W V +
Sbjct: 76 IFTIATELSPMTSPAFEVNRPTETEVLLSRLLEKTVRRSGALDTESLCLVAGQKCWSVRV 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQKEENSEKEPVNKEK 210
D++ L DG L DA+ L+ VAA + + P S+D G + V P +E+EPV
Sbjct: 136 DVHVLSHDGNLIDASCLAVVAALRHFRKPDTSMDAGVLTVYTP-------AEREPV---- 184
Query: 211 RKLTLGGIPFSLTCIL---HKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAV 267
L+ PF +T + + D T EE + T+ L+ ++ + K GG
Sbjct: 185 -PLSWLHSPFCVTWSFFGDEADIAVLDATWLEEQVRVGSCTISLNKHGEICQIAKLGGTP 243
Query: 268 LAYTSAVQDCIALTRQRVKELHQILEEAIS 297
+ + +Q C ++ +VKE +L+ ++
Sbjct: 244 VDAVALLQ-CTSVALTKVKEFSDLLDTKLA 272
>gi|410671928|ref|YP_006924299.1| 3' exoribonuclease [Methanolobus psychrophilus R15]
gi|409171056|gb|AFV24931.1| 3' exoribonuclease [Methanolobus psychrophilus R15]
Length = 255
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 120/265 (45%), Gaps = 22/265 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D RS + R+ + + A+GSA K G T +L +K++ P +
Sbjct: 8 YIYNLMLKGKRVDDRSFDQVRDIALETNVIDKAEGSAWVKYGETEVLVGVKVQAGAPFPD 67
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
S EG + + P+ SP G P E A +A+ I SG I+L +L + G+
Sbjct: 68 SAGEGVIITSLELNPLASPEFEAGPPKEGAIEMARVTDRGIRESGAIDLSKLCITKGEEV 127
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W++++DI+ L+ G + DA+ L A+AA IP E N + E +
Sbjct: 128 WIIFIDIHVLNDAGNIQDASSLGAIAALMTTTIPA----------------ERNGKGEDM 171
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
R P ++T + ++ DP +EE++ +T +T+V + + + K G
Sbjct: 172 AMPMRD-----TPLAITLVNIGGSLMVDPGRDEETVCDTKITIVSNQDGSISGMQKSGDG 226
Query: 267 VLAYTSAVQDCIALTRQRVKELHQI 291
L A++ + + ++ EL ++
Sbjct: 227 ALTEEQALK-AVEMACEKAAELRKV 250
>gi|171185833|ref|YP_001794752.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum neutrophilum
V24Sta]
gi|170935045|gb|ACB40306.1| 3' exoribonuclease [Pyrobaculum neutrophilum V24Sta]
Length = 273
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 129/239 (53%), Gaps = 14/239 (5%)
Query: 28 FERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLES 87
+R LA R D R R R+ I G V +ADGSA K+G T ++A +K+ + P ++
Sbjct: 20 IKRLLATRYRVDGREPERVRSVEIRTGVVKTADGSAEVKLGRTHVVAGVKVGLGQPFPDA 79
Query: 88 PDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAW 147
PDEG + + + P SP G P E+A +A+ + I G ++ K+L++ GGK A+
Sbjct: 80 PDEGVLVVSAEVLPHASPYTEVGPPDESAIELARVVDRGIRHCGYVDFKKLAVEGGK-AY 138
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVN 207
++++D+Y ++ DG L DAA L+AVAA N Q+P V ++E+ + + N
Sbjct: 139 ILWVDLYVINDDGNLVDAANLAAVAALKNTQLPAVV------------KEEQGVKLDRNN 186
Query: 208 KEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
K + L P +++ + +L DPT EEE ++ +T + S +++V+ K GA
Sbjct: 187 KTPLPVDLNKAPIAVSIGKIGSVLLLDPTLEEELSLDGRITFTI-SEDRIVAAQKTIGA 244
>gi|315050464|ref|XP_003174606.1| exosome complex exonuclease RRP45 [Arthroderma gypseum CBS 118893]
gi|311339921|gb|EFQ99123.1| exosome complex exonuclease RRP45 [Arthroderma gypseum CBS 118893]
Length = 292
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 128/263 (48%), Gaps = 17/263 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +++R D R + R ++ G GS ++G TT+L I E+ TP E +G
Sbjct: 19 LHKNVRLDGRRFDQLRPVELTFG---EEHGSVKVQLGKTTVLVRISAELTTPRPERDCDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P GRP+E +++ L + S ++ + L + G W V
Sbjct: 76 IFTVVVELNDMALPGYETGRPSELEVSLSRTLDKIVRRSNALDTESLCISKGMICWNVRA 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
DI+ LD DG L DA+ L+ +A + ++P ++ DG++ + E EK PV
Sbjct: 136 DIHILDCDGGLVDASCLAIMAGLLHFRLPESTVRDGEVTVFTTE------EKVPV----- 184
Query: 212 KLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
+L L IP S+T L+ +L D T+ EE++ E + V LD + ++ KP GA
Sbjct: 185 QLNLTKIPLSVTFNLYDEGKIMLLDATTSEEAVSEGSLVVALDKTGEIALYSKPDGAPAD 244
Query: 270 YTSAVQDCIALTRQRVKELHQIL 292
+ V L ++V+EL+++L
Sbjct: 245 PVNMVSSS-TLALEKVRELNKLL 266
>gi|167044511|gb|ABZ09186.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG6J21]
Length = 272
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 125/267 (46%), Gaps = 15/267 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D R+L R I G + A+GSA A++G T +++ IK++ P + D+G
Sbjct: 19 LQEGKRIDDRALDEPRPLVIDTGVIPHANGSARARLGDTEVVSGIKVQPDKPFPDMGDKG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ P+ P G P +A+ + I SGMI+L ++ L K+ V+
Sbjct: 79 IFICTAEILPLAHPSAETGPPQPNVIEIARVVDRGIRESGMIDLSQMVLQKDKSVIGVFA 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D D DG LFDA +AVAA +IP + D K V++ E+ + P+
Sbjct: 139 DNVVTDHDGNLFDACSYAAVAAIITSKIPKWEMKDDKPVLI-----EDQASDTPITT--- 190
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
IP S+T L +I+ DP +E ++ +T+ +S +V+L K G +
Sbjct: 191 ------IPISVTMGLIGEFIIVDPNLDEWECLDARITITTNSDGNIVALQKGGSDGFSLE 244
Query: 272 SAVQDCIALTRQRVKELHQILEEAISG 298
V+ C L+ K++ I+++A G
Sbjct: 245 QLVK-CAELSIAIGKKIRDIIKQATEG 270
>gi|255578727|ref|XP_002530222.1| exosome complex exonuclease rrp42, putative [Ricinus communis]
gi|223530269|gb|EEF32169.1| exosome complex exonuclease rrp42, putative [Ricinus communis]
Length = 287
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 135/284 (47%), Gaps = 21/284 (7%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
+ + + +++R D R R + G + A+GSA +IG+T ++A++K E+ P+
Sbjct: 10 NFIQGGINQNLRSDGRKRDAYRPIFVETGVIPQANGSARVRIGATEVIASVKAELGRPNA 69
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI--------SSSGM-INLK 136
PD+G V+I CSP+ P A ++ +LS + S +G I+L
Sbjct: 70 FQPDKGKVAIFVD----CSPVAEPTFEARGGEELSAELSAALQHCLLGGKSGAGAGIDLS 125
Query: 137 ELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQ 196
L + GK W +Y+D + DG L DA + AA SN IP V + G L +EQ
Sbjct: 126 SLVVAEGKICWDLYIDGLVVSFDGNLLDALGAAIKAALSNTGIPKVHVAAGG---LGDEQ 182
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
E + E E + G+P +T + + D TSEEES M + V+V ++
Sbjct: 183 PEVDISDE----EFLQFDTSGVPVIVTLTKVGRHYIVDATSEEESYMSSAVSVSINRKGH 238
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
+ L K GGA + S + D I++ + ++L L+ I+ E
Sbjct: 239 ICGLTKRGGAGID-PSVISDIISVAQHISEQLINKLDSEIAAAE 281
>gi|320163129|gb|EFW40028.1| polymyositis/scleroderma autoantigen 1 [Capsaspora owczarzaki ATCC
30864]
Length = 313
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 136/283 (48%), Gaps = 19/283 (6%)
Query: 24 PLRYFERHLAES-----IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
PL ER + +R D R + R I A G ++G T ++ +
Sbjct: 5 PLSNNERSFVQGAMKSGLRVDGRGVYDFRRIRI---AYQPERGHVEVQLGRTRVMVQVSC 61
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ P + P EG V + + P+ SP PGRP+E A +++ + + S I+ L
Sbjct: 62 ELTKPFPDRPAEGAVQFNVELSPMASPAFEPGRPSEQAIELSRMVERVVKDSNAIDTTSL 121
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTV---SLDDGKIVMLPEE 195
++ G+A W + +D++ LD DG L DA ++A+A + + P V SL G +
Sbjct: 122 CVISGEAVWNIRVDLHALDHDGNLSDALCMAALAGLIHFRKPEVSMPSLSSGDESVAGNL 181
Query: 196 QKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDS 253
+ E+EP+ L++ +P +T + +++ DPT +EE + E + V ++
Sbjct: 182 IIHDVREREPL-----PLSVHHMPLCVTFAFLDDGEHMVVDPTFQEERVAEGYLIVAMNI 236
Query: 254 SNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
++ +++K G+VL S + C + +V E+ ++L+++I
Sbjct: 237 HREVCAVHK-HGSVLLDASQISRCTKIAAIKVAEMTELLQKSI 278
>gi|413937194|gb|AFW71745.1| hypothetical protein ZEAMMB73_342555 [Zea mays]
Length = 363
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 140/274 (51%), Gaps = 18/274 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ E L +R D R R I+ G DGS+ ++G T ++ + ++++ P +
Sbjct: 15 FIECALQSDLRVDGRHSFDFRKLKITFG---REDGSSEVQLGETHVMGYVTVQLVQPYRD 71
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P+EG ++I P+ P PGRP E A + + + + S ++++ L +V GK
Sbjct: 72 RPNEGTLAIFTEFSPMADPSFEPGRPGELAIELGRVIDRGLRESRAVDMESLCVVAGKHV 131
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDGKIVMLPEEQKEENSEKE 204
W V +D++ LD G L DAA ++A+AA S + P TV DDG+ V + +
Sbjct: 132 WSVRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGDDGQQVTV----------HD 181
Query: 205 PVNKEKRKLTLGGIPFSLTCIL--HKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
P ++ LT+ +P ++T N ++ DPT +EE++M +T +++S+ + ++ K
Sbjct: 182 PEVRDPLPLTIHHMPIAVTFAYFGEGNIVVLDPTYKEEAVMGGRMTAIVNSNGDVCAIQK 241
Query: 263 PGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG + +S + C+ + + ++ +++A+
Sbjct: 242 AGGEGV-MSSVIMQCLRIASVKAADITSKIKKAV 274
>gi|406862206|gb|EKD15257.1| 3' exoribonuclease family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 344
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 158/340 (46%), Gaps = 74/340 (21%)
Query: 17 DAFRRLFPLRYFERHL------AESIRPDARSLSRARNTTISMGAVASADGSALAKIGST 70
+ F +L P Y HL S R + R+ ++ R I+ G++ A+GSA+ +IG T
Sbjct: 15 ETFAKLSPHPYLLAHLQPSSSNVPSTRANGRTPTQFRTPHINNGSLTHAEGSAVVRIGDT 74
Query: 71 TMLAAIKMEVM---------------TPSLESPDEGCVSIDFHMPPI-----CSPLVRPG 110
T++ I+ E++ PS + +D +P I CSP PG
Sbjct: 75 TVVCGIRGEILLASNVAGYRVDNATTAPSAQPGYNEAKELDLLVPNIELATGCSPAFMPG 134
Query: 111 RPAEA-APVVAKQLSDTISSSGMINLKELSL------VGG----------------KAAW 147
+P A ++ ++ + SSG+++ +EL + +G KA W
Sbjct: 135 QPPSTLAQSLSTRIYSLLHSSGLVDGEELRIWYQPPDLGDQDRMEEDDPEDLEPEVKAFW 194
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVN 207
++Y+DI + DG FDAA + V+A ++++P D + ++L E+ +
Sbjct: 195 VLYIDILFISLDGNPFDAAWAAVVSALKDVRLPKAYWDADREMILCEDSVSIS------- 247
Query: 208 KEKRKLTLGGIPFSLTCIL-----------HKNYILADPTSEEESIMETLVTVVLD---S 253
+KLTL G+P ++T ++ K++IL DP + EE + + VT+V+D
Sbjct: 248 ---KKLTLRGMPIAVTTLVFRAKEQIQGRDKKHWILVDPDTFEEGLCDENVTIVVDCGGK 304
Query: 254 SNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILE 293
+L+ + K GG ++ + + + + L +R KEL +LE
Sbjct: 305 KTKLLGISKSGGTIVG-SEEMGELVGLAEKRWKELSTLLE 343
>gi|403170373|ref|XP_003329715.2| exosome complex component RRP45 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168691|gb|EFP85296.2| exosome complex component RRP45 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 288
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 136/278 (48%), Gaps = 22/278 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSAL-AKIGSTTMLAAIKMEVMTPSL 85
+ + L E R D R+L R ++S + DG ++ +G+T + A + + P
Sbjct: 14 FLLQALKEGTRIDQRALLEQRPVSLSF----AEDGHSVDCSLGNTRVAAHVSASITKPWA 69
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P EG I + P+ + + GR +E +++ L ++S SG+I+ + L ++ G+
Sbjct: 70 DRPFEGLFQISSEINPMANFIYDTGRSSENEIQISRMLDKSLSRSGVIDKEALCILAGQM 129
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + LD++ L+ +G L D A ++A+AA Q P V+L +I + E+ P
Sbjct: 130 VWSIRLDLHFLNDEGNLLDCASIAAIAALQTFQRPDVTLVGEEITI------HSIQERVP 183
Query: 206 VNKEKRKLTLGGIPFSLTCIL-----HKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
V LTL P SLT HK+ ++ DP EE + +T+ L+ ++ +
Sbjct: 184 V-----PLTLHHTPISLTYGFFELDSHKSSVVLDPNYLEEQLSTGTITLALNPQKEICVV 238
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISG 298
K GG L+ + + + L Q+VK+L Q+++ IS
Sbjct: 239 NKSGGVPLS-IEEIMNVVKLGSQKVKQLDQLIKSLISN 275
>gi|293335353|ref|NP_001170333.1| uncharacterized protein LOC100384304 [Zea mays]
gi|224030955|gb|ACN34553.1| unknown [Zea mays]
gi|224035157|gb|ACN36654.1| unknown [Zea mays]
gi|413937197|gb|AFW71748.1| hypothetical protein ZEAMMB73_342555 [Zea mays]
Length = 393
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 140/274 (51%), Gaps = 18/274 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ E L +R D R R I+ G DGS+ ++G T ++ + ++++ P +
Sbjct: 15 FIECALQSDLRVDGRHSFDFRKLKITFG---REDGSSEVQLGETHVMGYVTVQLVQPYRD 71
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P+EG ++I P+ P PGRP E A + + + + S ++++ L +V GK
Sbjct: 72 RPNEGTLAIFTEFSPMADPSFEPGRPGELAIELGRVIDRGLRESRAVDMESLCVVAGKHV 131
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDGKIVMLPEEQKEENSEKE 204
W V +D++ LD G L DAA ++A+AA S + P TV DDG+ V + +
Sbjct: 132 WSVRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGDDGQQVTV----------HD 181
Query: 205 PVNKEKRKLTLGGIPFSLTCIL--HKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
P ++ LT+ +P ++T N ++ DPT +EE++M +T +++S+ + ++ K
Sbjct: 182 PEVRDPLPLTIHHMPIAVTFAYFGEGNIVVLDPTYKEEAVMGGRMTAIVNSNGDVCAIQK 241
Query: 263 PGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG + +S + C+ + + ++ +++A+
Sbjct: 242 AGGEGV-MSSVIMQCLRIASVKAADITSKIKKAV 274
>gi|413937198|gb|AFW71749.1| hypothetical protein ZEAMMB73_342555 [Zea mays]
Length = 337
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 140/274 (51%), Gaps = 18/274 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ E L +R D R R I+ G DGS+ ++G T ++ + ++++ P +
Sbjct: 15 FIECALQSDLRVDGRHSFDFRKLKITFG---REDGSSEVQLGETHVMGYVTVQLVQPYRD 71
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P+EG ++I P+ P PGRP E A + + + + S ++++ L +V GK
Sbjct: 72 RPNEGTLAIFTEFSPMADPSFEPGRPGELAIELGRVIDRGLRESRAVDMESLCVVAGKHV 131
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDGKIVMLPEEQKEENSEKE 204
W V +D++ LD G L DAA ++A+AA S + P TV DDG+ V + +
Sbjct: 132 WSVRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGDDGQQVTV----------HD 181
Query: 205 PVNKEKRKLTLGGIPFSLTCIL--HKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
P ++ LT+ +P ++T N ++ DPT +EE++M +T +++S+ + ++ K
Sbjct: 182 PEVRDPLPLTIHHMPIAVTFAYFGEGNIVVLDPTYKEEAVMGGRMTAIVNSNGDVCAIQK 241
Query: 263 PGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG + +S + C+ + + ++ +++A+
Sbjct: 242 AGGEGV-MSSVIMQCLRIASVKAADITSKIKKAV 274
>gi|167537668|ref|XP_001750502.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771042|gb|EDQ84716.1| predicted protein [Monosiga brevicollis MX1]
Length = 1499
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 142/276 (51%), Gaps = 24/276 (8%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE-SPDEGCVS 94
+RPD R L+ R T +S+ V SA+GS++ +G T+++A++K E P L + G +
Sbjct: 1227 VRPDGRELAEPRVTRVSVNVVQSANGSSMVVMGKTSVMASLKAEFANPPLNPNAASGWLV 1286
Query: 95 IDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIY 154
+ MPP+CS + PG P+ A ++ LSD + ++ ++L + K W ++LD+
Sbjct: 1287 ANVTMPPMCSSTITPGPPSTQARALSTFLSDILLRHNVVRPEQLVIKANKLVWCLFLDVV 1346
Query: 155 CLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP-VNKEKR-K 212
L+ DG L DA LL+A AA +PTV D E ++ + P V+ +R
Sbjct: 1347 VLNDDGNLPDAILLAAAAALQTATLPTVESAD--------ENEDAGEDTIPTVDPSQRVA 1398
Query: 213 LTLGGIPFSLT-CILHKNY--ILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
L+LG +P + T LH++ IL DPT EEE++ +TVV+ ++++ P V
Sbjct: 1399 LSLGQLPLAATMAWLHQDAEEILVDPTHEEENMATACMTVVMQ-GDKVLRTDLPSVHVAP 1457
Query: 270 YT---------SAVQDCIALTRQRVKELHQILEEAI 296
T SA+Q + R +EL +L A+
Sbjct: 1458 STMQTVMPLPVSAMQAAVRSAAVRTQELQGLLRSAV 1493
>gi|428672169|gb|EKX73083.1| 3' exoribonuclease family, domain 1 containing protein [Babesia
equi]
Length = 305
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 127/280 (45%), Gaps = 30/280 (10%)
Query: 29 ERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESP 88
ER L IR D R L RN I GS + G+TT+ +++ EV+ P+ E P
Sbjct: 26 ERALLNGIRIDGRQLDSYRNINIEF---IGPPGSVIISFGNTTVFSSVCAEVVEPNSERP 82
Query: 89 DEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWM 148
+EG + + + P+ S L PG+ +E ++ + SG +NL+ L + GK W
Sbjct: 83 NEGFLFFNAELMPLTSGLYEPGKASELEQNISCFIESVFKESGSLNLESLCITSGKHVWA 142
Query: 149 VYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNK 208
+ + I+ L DG LFD SA+A+ + +I V + D + + +N
Sbjct: 143 IRVYIHVLQDDGNLFDVCSFSALASLLHYRIQEVKVVDDTVKI------------SEINW 190
Query: 209 EKRKLTLGGIPFSLTCILH--------KNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
K G P ++ I + L DPT EE I T + +V + +++ +
Sbjct: 191 HK------GTPLNIYNIPIPINILILTEERFLVDPTIFEEQINSTQIFLVFNQFGEVIWV 244
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
KPGG + ++ I + ++ K+L+ +L + ++ E
Sbjct: 245 QKPGG-IPVMLDIIKTAIEIGERKTKQLYSLLRKELASNE 283
>gi|115446633|ref|NP_001047096.1| Os02g0550700 [Oryza sativa Japonica Group]
gi|50725756|dbj|BAD33267.1| putative polymyositis/scleroderma autoantigen 1 [Oryza sativa
Japonica Group]
gi|113536627|dbj|BAF09010.1| Os02g0550700 [Oryza sativa Japonica Group]
Length = 395
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 135/273 (49%), Gaps = 22/273 (8%)
Query: 16 VDAFRRLFPL----RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTT 71
+D +R P + ER L +R D R R I G DGSA ++G T
Sbjct: 1 MDHHQRWHPTVNEREFIERALQSDLRVDGRRPFDFRRLKILFG---REDGSAEVQLGDTR 57
Query: 72 MLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSG 131
++ +++ P + P+EG ++I P+ P PGRP E+A + + + + S
Sbjct: 58 VMGYATAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGESAIELGRVVDRGLRESR 117
Query: 132 MINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDGKI 189
++++ L +V GK W V +D++ LD G L DAA ++A+AA S + P TV +DG+
Sbjct: 118 AVDMESLCVVAGKHVWSVRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGEDGQQ 177
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL--HKNYILADPTSEEESIMETLV 247
V + +P ++ LT+ +P ++T N ++ DPT +EE++M +
Sbjct: 178 VTV----------HDPEVRDPLPLTIHHLPIAVTFAYFGEGNIMVIDPTYKEEAVMGGRM 227
Query: 248 TVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIAL 280
T ++S+ + S+ K GG + +S + C+ +
Sbjct: 228 TATINSNGDVCSIQKAGGEGV-MSSVIMQCLRI 259
>gi|429850259|gb|ELA25551.1| 3 exoribonuclease [Colletotrichum gloeosporioides Nara gc5]
Length = 298
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 18/274 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + L E++R D+R + R ++ G G A ++G TT+L + EV P +
Sbjct: 14 FVTQALKENLRLDSREFDQYRKVQLTFG---DEYGVANVELGKTTILVKVSAEVTVPYAD 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P EG I + P+ SP RP EA ++++ L TI SG ++ + L LV G+
Sbjct: 71 RPFEGIFQIVTELSPMASPAFEVNRPTEAEVLLSRLLEKTIRRSGALDTESLCLVAGQKV 130
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W V D++ L DG L DAA L +AA + + P S + + + +E+EPV
Sbjct: 131 WSVRADVHVLSHDGNLTDAACLGVIAALRHFRKPDTSNEGEALTIFTP------AEREPV 184
Query: 207 NKEKRKLTLGGIPFSLTCILHKN---YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
L+ PF +T + + L D EE + + +TV L+ ++ + K
Sbjct: 185 -----PLSWLHSPFCVTFSFYGDEGEITLIDANWLEEQLRASSLTVSLNKHGEISQISKL 239
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
GG + + + C + Q+ K+ +++E ++
Sbjct: 240 GGTPVEAVTLLH-CGNVALQKAKDFSSLVDEKLA 272
>gi|413937195|gb|AFW71746.1| hypothetical protein ZEAMMB73_342555 [Zea mays]
gi|413937196|gb|AFW71747.1| hypothetical protein ZEAMMB73_342555 [Zea mays]
Length = 446
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 140/274 (51%), Gaps = 18/274 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ E L +R D R R I+ G DGS+ ++G T ++ + ++++ P +
Sbjct: 15 FIECALQSDLRVDGRHSFDFRKLKITFG---REDGSSEVQLGETHVMGYVTVQLVQPYRD 71
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P+EG ++I P+ P PGRP E A + + + + S ++++ L +V GK
Sbjct: 72 RPNEGTLAIFTEFSPMADPSFEPGRPGELAIELGRVIDRGLRESRAVDMESLCVVAGKHV 131
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDGKIVMLPEEQKEENSEKE 204
W V +D++ LD G L DAA ++A+AA S + P TV DDG+ V + +
Sbjct: 132 WSVRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGDDGQQVTV----------HD 181
Query: 205 PVNKEKRKLTLGGIPFSLTCIL--HKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
P ++ LT+ +P ++T N ++ DPT +EE++M +T +++S+ + ++ K
Sbjct: 182 PEVRDPLPLTIHHMPIAVTFAYFGEGNIVVLDPTYKEEAVMGGRMTAIVNSNGDVCAIQK 241
Query: 263 PGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG + +S + C+ + + ++ +++A+
Sbjct: 242 AGGEGV-MSSVIMQCLRIASVKAADITSKIKKAV 274
>gi|10640638|emb|CAC12416.1| rRNA processing protein (yeast RRP45) related protein [Thermoplasma
acidophilum]
Length = 240
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 124/255 (48%), Gaps = 25/255 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R R TI + A+GSA +G+T ++A +K+E P ++PD+G ++ +
Sbjct: 6 RIDGRLPDEFRELTIIENYIPRANGSAYVALGNTRVVAGVKIEAGEPFPDTPDQGVLTTN 65
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ PI P G P + A V++ + I S MI+ ++L + GK W+V+LDI L
Sbjct: 66 VELLPIAFPSFEAGPPNDLAIEVSRVVDRGIRESKMISPEKLVIEQGKKVWIVFLDINVL 125
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG L DA+ ++AVAA N +P + KE E KL +
Sbjct: 126 DYDGNLIDASTIAAVAALRNAVVP--------------------ASKE--GGEDFKLPVS 163
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT-SAVQ 275
P S+T + + ++ DP+ EE+ I +TV + ++ K G + A+T V+
Sbjct: 164 STPISVTMVKIGDTLVCDPSLEEDQICGGRITVTTTEDGHIRAMQK--GEIGAFTVEDVK 221
Query: 276 DCIALTRQRVKELHQ 290
+ ++ + K+L +
Sbjct: 222 KAVKMSLEVGKKLRE 236
>gi|340959729|gb|EGS20910.1| hypothetical protein CTHT_0027490 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 293
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 127/269 (47%), Gaps = 18/269 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E +R D R L + R +++ G G A G T +LA EV P + P +G
Sbjct: 19 LQEGLRLDGRQLDQYRPLSLTFG---DQYGVADVTFGKTRVLAKASAEVTVPYADRPLDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + P+ SP RP E ++++ L TI SG ++ + L LV G+ W + +
Sbjct: 76 IFTIATELSPMTSPTFEVNRPTETEVLLSRLLEKTIRRSGALDTESLCLVAGQKCWSIRV 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ + DG L DAA ++ VAA + + P S++ G + + +E+EPV
Sbjct: 136 DVHVMSHDGNLVDAACIAVVAALRHFRKPDTSIESGVLTIYTP------AEREPV----- 184
Query: 212 KLTLGGIPFSLTCILHKN---YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
L+ PF +T + + D T EE + T+ ++ ++ + K GG +
Sbjct: 185 PLSWLHTPFCVTWSFFGDEGEIAVLDATWLEEQVRVGSCTISMNKHGEICQIAKLGGTPV 244
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAIS 297
S +Q C ++ +VKE ++++ ++
Sbjct: 245 EAVSLLQ-CTSIALTKVKEFSDLVDKKLA 272
>gi|260806963|ref|XP_002598353.1| hypothetical protein BRAFLDRAFT_261208 [Branchiostoma floridae]
gi|229283625|gb|EEN54365.1| hypothetical protein BRAFLDRAFT_261208 [Branchiostoma floridae]
Length = 444
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 124/262 (47%), Gaps = 17/262 (6%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R R +S G G + +G T +LA + ++ P P EG + I+
Sbjct: 23 RIDGRQTYDYRRLKVSFGM---ERGCCIVDLGDTKVLAQVSGKIEEPKKNRPTEGSIIIN 79
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ SP PGRP E+ + + L I S ++ + L +V G+ W + D++ L
Sbjct: 80 LELSPMASPAFEPGRPTESGIEMNRILERNIRDSRAVDTESLCIVAGEKVWSIRADVHVL 139
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
+ +G + DAA ++A+ A S+ + P VS+ EE + P +++ L++
Sbjct: 140 NDEGNIMDAASIAAITALSHFRRPDVSV-----------MGEEVTVHSPEDRDPVPLSVH 188
Query: 217 GIPFSLTCIL--HKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAV 274
+P +T ++L DP EE +M+ + V ++ ++ +L GG +L +
Sbjct: 189 HMPVCVTFAFFDQGEFLLVDPNRSEERVMDGRMVVGMNMHREICTLMMSGGMLLVKEQVL 248
Query: 275 QDCIALTRQRVKELHQILEEAI 296
+ C + +V E+ ++++ A+
Sbjct: 249 R-CSQIATVKVAEIIELIQRAL 269
>gi|432843370|ref|XP_004065602.1| PREDICTED: exosome complex component RRP45-like [Oryzias latipes]
Length = 427
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 140/286 (48%), Gaps = 21/286 (7%)
Query: 13 EMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTM 72
E + A R F L+ E E R D R R IS G + G +G T +
Sbjct: 3 ETPLSACERDFILKAIE----EKKRLDGRQTYDYRKIKISFG---TDYGCCFVDLGQTRV 55
Query: 73 LAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGM 132
+A + E++ P P+EG + + + P+ SP GR +E + + +QL + +S
Sbjct: 56 MAQVSCELVAPKESRPNEGIMFFNIELSPLASPAFEQGRQSELSVKLNRQLERCLRNSKC 115
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVML 192
I+ + L +V G+ W + +D++ L+ DG L DA+ ++A+AA + + P V++ ++ +
Sbjct: 116 IDTESLCVVSGEKVWQIRVDVHMLNNDGNLMDASSIAAIAALCHFRRPDVAVQGEEVTVY 175
Query: 193 PEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVV 250
E E++P+ L++ +P S++ + Y+L DP EE +M+ L+ +
Sbjct: 176 SPE------ERDPI-----PLSIYHMPISVSFSFFQQGTYLLVDPCEREERVMDGLLMIA 224
Query: 251 LDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
++ ++ S+ GG +L V C + +V E+ +++ +A+
Sbjct: 225 MNKHREICSIQSSGGIML-LKEQVMRCSKIASVKVSEITELISKAL 269
>gi|16082607|ref|NP_394748.1| exosome complex RNA-binding protein Rrp42 [Thermoplasma acidophilum
DSM 1728]
gi|29336948|sp|Q9HIP1.2|ECX2_THEAC RecName: Full=Probable exosome complex exonuclease 2
Length = 260
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 124/255 (48%), Gaps = 25/255 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R R TI + A+GSA +G+T ++A +K+E P ++PD+G ++ +
Sbjct: 26 RIDGRLPDEFRELTIIENYIPRANGSAYVALGNTRVVAGVKIEAGEPFPDTPDQGVLTTN 85
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ PI P G P + A V++ + I S MI+ ++L + GK W+V+LDI L
Sbjct: 86 VELLPIAFPSFEAGPPNDLAIEVSRVVDRGIRESKMISPEKLVIEQGKKVWIVFLDINVL 145
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG L DA+ ++AVAA N +P + KE E KL +
Sbjct: 146 DYDGNLIDASTIAAVAALRNAVVP--------------------ASKE--GGEDFKLPVS 183
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT-SAVQ 275
P S+T + + ++ DP+ EE+ I +TV + ++ K G + A+T V+
Sbjct: 184 STPISVTMVKIGDTLVCDPSLEEDQICGGRITVTTTEDGHIRAMQK--GEIGAFTVEDVK 241
Query: 276 DCIALTRQRVKELHQ 290
+ ++ + K+L +
Sbjct: 242 KAVKMSLEVGKKLRE 256
>gi|313870783|gb|ADR82276.1| exosome complex exonuclease [Blumeria graminis f. sp. tritici]
Length = 303
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 136/280 (48%), Gaps = 24/280 (8%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++F + L + +R DAR + R T+ A A G +G T + A + EV P
Sbjct: 13 QFFTQALRQQLRLDARPFDQFRPITL---AFAERYGVVDLSLGGTRIHAHVSAEVTQPYP 69
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P EG +I + P+ + PGR + +V++ L TI SG ++ + L L+ G+
Sbjct: 70 DRPYEGLFTIVTELSPMTHAHLEPGRNSPLEMLVSRLLEKTIRRSGALDPESLCLLAGQT 129
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L +G L DAA ++ +AA ++ + P + G++ + +E+EP
Sbjct: 130 CWSIRVDVHVLSVEGNLIDAASIAVIAALAHFKRPETNTVGGEVTLY------TLAEREP 183
Query: 206 VNKEKRKLTLGGIPFSLTCILHKNY---------ILADPTSEEESIMETLVTVVLDSSNQ 256
V L+L P +T +K++ +L D EE + E +T+ ++ +
Sbjct: 184 V-----PLSLLHWPLCITFSFYKDHSEGASGEDTVLLDANELEEHMREGSMTIGMNKHGE 238
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+ L K GGA + S ++ C+ L +VKE+ I+ + +
Sbjct: 239 ICQLVKLGGAPVDAASLLK-CVNLASMKVKEVSDIIAKQL 277
>gi|198401795|gb|ACH87550.1| exosome component 9 [Platynereis dumerilii]
Length = 530
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 132/267 (49%), Gaps = 17/267 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+++ +R D R R I G G +G T ++A EV TP P EG
Sbjct: 113 ISKKMRLDGRGCYDYRRIKIQFGI---DRGCCQVHLGKTIVMAQTSCEVTTPKQTRPSEG 169
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
V ++ + P+ +P GR ++A + + L I S ++ + L ++ G W + +
Sbjct: 170 NVFVNVELSPMAAPHFEAGRQSDAGVELTRILERCIKESRCVDTESLCIMSGVKVWTIRV 229
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ L+ +G L DAA ++A+++ + + P VS+ + + E +++P+
Sbjct: 230 DVHVLNHNGNLIDAASIAAISSLVHFRRPDVSVSGEDVTIHSLE------DRDPI----- 278
Query: 212 KLTLGGIPFSLTC-ILHKN-YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
L++ +P +TC HK Y+L DPT +EE++M+ V V ++ ++ + ++ G++L
Sbjct: 279 PLSVHHMPICVTCAFYHKGTYLLIDPTDKEENVMDGKVIVGMNKHREICT-FQLTGSMLL 337
Query: 270 YTSAVQDCIALTRQRVKELHQILEEAI 296
V C + +V E+ ++E+A+
Sbjct: 338 LKEQVLRCSNMAVVKVGEMTALIEQAL 364
>gi|449303023|gb|EMC99031.1| hypothetical protein BAUCODRAFT_146018 [Baudoinia compniacensis
UAMH 10762]
Length = 295
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 129/268 (48%), Gaps = 14/268 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +++R D R L R +++ G A +IG T +L + EV+TP + +G
Sbjct: 19 LRQNVRLDGRPLDAYRPISLAFPTHPDVYGQAEVRIGKTRVLCNVSCEVVTPYPDRKFDG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + P+ SP GRP + ++++ L TI SG ++ + L +V G+ + V
Sbjct: 79 VFTISCELGPMASPAFEVGRPDQTEMLISRILEKTIRRSGALDTESLCIVAGQKCFHVRA 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
DI+ LD DG L DAA ++ +AA + + P + + + E+EPV
Sbjct: 139 DIHVLDHDGNLLDAACIALMAALLHFRRPDFEVHGEDVTVF------SVREREPV----- 187
Query: 212 KLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
KLT+ PF +T + + +L D T EE E V V ++ ++ + K GGA +
Sbjct: 188 KLTVQHHPFCITTSYYDSGQIMLTDATLLEEQCREGEVIVSMNRFGEVCQVAKYGGAAVD 247
Query: 270 YTSAVQDCIALTRQRVKELHQILEEAIS 297
S + C+ +VK L ++++ ++
Sbjct: 248 GLSMLT-CVNSALDKVKALDKLVKAKLA 274
>gi|242097164|ref|XP_002439072.1| hypothetical protein SORBIDRAFT_10g031070 [Sorghum bicolor]
gi|241917295|gb|EER90439.1| hypothetical protein SORBIDRAFT_10g031070 [Sorghum bicolor]
Length = 286
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 135/276 (48%), Gaps = 20/276 (7%)
Query: 29 ERH-----LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTP 83
E+H +A+ +R D R + R ++ G + A+GSA ++G+T ++A++K E+ P
Sbjct: 8 EKHFICGGIAQDLRTDGRRRLQFRALSVQTGVIPQANGSARVRLGATEIIASVKAELGKP 67
Query: 84 SLESPDEGCVSIDFHMPPICSPLVRPGRPAE---AAPVVAKQ---LSDTISSSGMINLKE 137
S+ PD+G VSI P P+ GR +E A V+ Q L + I+L
Sbjct: 68 SILHPDKGKVSIFVDCSPTAEPMFE-GRGSEELSAELSVSLQRCLLGGKSGAGAAIDLSS 126
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L +V GK W +Y+D + +DG L DA + A S+ IP V++
Sbjct: 127 LIVVEGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVS-------VNAAS 179
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
+E E + ++E + +P +T + + D TSEEES M + V+V ++ + Q+
Sbjct: 180 DEEPEVDVSDEEFLQFDTSSVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRNGQI 239
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILE 293
L K GGA L S + D I++ + ++ +L+
Sbjct: 240 CGLTKRGGAGLD-PSVIFDMISVAKHVSQQFISLLD 274
>gi|255513310|gb|EET89576.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 258
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 136/272 (50%), Gaps = 24/272 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E R D+R R+ IS G + A+GSA A +G+T +LA +K+ +
Sbjct: 11 YIKELAKEGKREDSRGSMDFRDLKISRGVIDHAEGSAQADLGATKVLAGVKLVQEDVYED 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+PD+G + + + P+ + G P+ A + + + I + I+LK L L GK A
Sbjct: 71 TPDQGNLVVSAELLPLAAAEYETGPPSPEAIELGRVVDRAIRAGNCIDLKSLLLEEGK-A 129
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W VY+D+Y L+ DG LFDA++++A++A + ++P + DGK
Sbjct: 130 WTVYVDVYVLNFDGNLFDASVIAAMSAILDARVPEYA--DGKA---------------DY 172
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
K ++KL + + S T IL DPT EE M+ +T+ D +++ + G
Sbjct: 173 TKREKKLKVDNVVSSTTFAKIGKAILLDPTGNEELGMDARLTISTD--GKMIRAMQKG-- 228
Query: 267 VLAYTSAVQDCIALTRQRVKELHQILEEAISG 298
LA + +V++ +L + +K+ H +E+ I G
Sbjct: 229 -LAGSFSVEEIESLIAESLKK-HAHMEKKIRG 258
>gi|328790286|ref|XP_624243.3| PREDICTED: exosome complex exonuclease RRP45-like [Apis mellifera]
Length = 414
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 133/279 (47%), Gaps = 23/279 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + + + IR D RSL AR I AS GS + +G T ++A + ++ P
Sbjct: 13 FVNKSVEQGIRLDGRSLLEARPVKIYF---ASNWGSCMVLLGQTRVIAQVTCDIQQPKTS 69
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P+EG + I+ + P+ + GR +E + ++++QL S I+L+ L ++ K
Sbjct: 70 RPNEGMLHINVELNPMAAQHFDSGRQSEISILISRQLEKCYQDSKCIDLESLCIIADKKV 129
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W + +DI ++ DG L D A ++ +AA S+ P V+ + I++ P SEK+P+
Sbjct: 130 WNLRVDINVINHDGNLIDCASIATLAALSHFHRPDVTSNGEDIIVHPF------SEKDPL 183
Query: 207 NKEKRKLTLGGIPFSLTCI-LHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
LTL P ++ I + DPT EE I +T+ ++S +L SL+
Sbjct: 184 -----PLTLYHYPVCVSFITFESGNTVMDPTYLEERIGVAQLTLGINSYRELCSLH---F 235
Query: 266 AVLAYTSAVQDCIA-----LTRQRVKELHQILEEAISGM 299
L T V+D I+ T V+ + QI E S +
Sbjct: 236 NYLTKTMTVEDVISAVSSYATNYAVQLVQQIKETVFSDI 274
>gi|297829330|ref|XP_002882547.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328387|gb|EFH58806.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 287
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 129/280 (46%), Gaps = 13/280 (4%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
+ + +A+ +R D R R + G + A+GSA KIG T ++A++K E+ PS
Sbjct: 10 HFVKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVKIGGTDVIASVKAEIGRPSS 69
Query: 86 ESPDEGCVSIDFHMPPICSPLV--RPGRPAEAAPVVAKQ---LSDTISSSGMINLKELSL 140
PD+G V++ P P R G + +A Q L + INL L +
Sbjct: 70 LQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLI 129
Query: 141 VGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEEN 200
GK W +Y+D + +DG L DA + AA +N IP V++ E +E
Sbjct: 130 KEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVS-------AEVADDEQ 182
Query: 201 SEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
E + ++E + +P +T + + D T+EEES M + V++ ++ + + L
Sbjct: 183 PEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRAGHICGL 242
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
K GG+ L S + D I++ + + L L+ IS E
Sbjct: 243 TKRGGSGLD-PSVILDMISVAKHVTENLMSKLDSEISAAE 281
>gi|358381167|gb|EHK18843.1| hypothetical protein TRIVIDRAFT_193923 [Trichoderma virens Gv29-8]
Length = 293
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 123/269 (45%), Gaps = 18/269 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+ E +R D R L R+ +S G G A K+G T +LA + EV P + P +G
Sbjct: 19 IGEGLRLDGRKLDEFRSLELSFG---DEYGVADVKLGKTRVLAKVSAEVTVPFPDRPFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
I + P+ +P RP E ++A+ L TI SG ++ + L LV G+ W V +
Sbjct: 76 IFQITSELGPMVAPSFEVNRPTETEVLLARLLEKTIRRSGALDTESLCLVAGQKCWSVRV 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ L ADG L D++ + VAA + + P S++ + + +E+EPV
Sbjct: 136 DLHVLSADGNLIDSSCFAVVAALRHFRKPDTSMEGETLTIYT------AAEREPV----- 184
Query: 212 KLTLGGIPFSLTCILH---KNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
L+ PF + +L D T EE + T L+ ++ + K GG +
Sbjct: 185 PLSWLHSPFCTSFDFFGEDGEIVLVDTTWLEEQLRVGSCTFSLNKHGEICQISKLGGKPI 244
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAIS 297
T +Q C + +VKE +++ ++
Sbjct: 245 EATLIIQ-CAQMALAKVKEFTDLVDRKLA 272
>gi|357149443|ref|XP_003575114.1| PREDICTED: exosome complex component RRP45-like isoform 1
[Brachypodium distachyon]
Length = 336
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 18/258 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ E+ L +R D R R I G DGSA ++G T ++ + +++ P +
Sbjct: 15 FIEQALQSDLRVDGRRPFDFRKLKIVFG---REDGSAEVELGETRVMGYVTAQLVQPYKD 71
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P EG ++I P+ P PGRP EAA + + + + S ++++ L +V GK
Sbjct: 72 RPSEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGKHV 131
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDGKIVMLPEEQKEENSEKE 204
W + +D++ LD G L DAA ++A+AA S + P TV +DG+ V + +
Sbjct: 132 WSLRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGEDGQQVTV----------HD 181
Query: 205 PVNKEKRKLTLGGIPFSLTCILH--KNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
P ++ LT+ +P ++T N ++ DPT +EE++M +T ++S+ + S+ K
Sbjct: 182 PEVRDPLPLTIHHLPIAVTFAYFGDGNIMVIDPTYKEEAVMGGRMTATINSNGDVCSIQK 241
Query: 263 PGGAVLAYTSAVQDCIAL 280
GG + +S + C+ +
Sbjct: 242 AGGEGV-MSSVIMQCLRI 258
>gi|336469878|gb|EGO58040.1| hypothetical protein NEUTE1DRAFT_82175 [Neurospora tetrasperma FGSC
2508]
gi|350290437|gb|EGZ71651.1| ribosomal protein S5 domain 2-like protein [Neurospora tetrasperma
FGSC 2509]
Length = 297
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 126/270 (46%), Gaps = 24/270 (8%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E IR D R + R ++ G G A +G T +LA EV P + P +G
Sbjct: 22 EQIRLDGREFDQYRPLELTFG---DEYGVANVSLGKTKILAKASAEVTVPFADRPLDGIF 78
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDI 153
+I + P+ +P RP E ++++ L T+ SG ++ + L LV G+ W V +D+
Sbjct: 79 TIATELSPMAAPHFEVNRPTETEVLLSRLLEKTVRRSGALDTESLCLVAGQKCWSVRVDV 138
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQKEENSEKEPVNKEKRK 212
+ L DG L DAA + VAA + + P S+++G + V P +E+EPV
Sbjct: 139 HVLSHDGNLTDAACFAVVAALRHFRKPDTSMENGVLTVYTP-------AEREPV------ 185
Query: 213 LTLGGI--PFSLTCILHKN---YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAV 267
LG + PF +T + L D EE + VT+ L+ ++ + K GG
Sbjct: 186 -PLGWLHSPFCVTWSFFGDEGETALLDADWMEEQVRVASVTISLNRHGEICQIAKLGGVP 244
Query: 268 LAYTSAVQDCIALTRQRVKELHQILEEAIS 297
+ + +Q C ++ +VKE L++ ++
Sbjct: 245 VEAVALLQ-CTSVALTKVKEFSTYLDDKLA 273
>gi|297817356|ref|XP_002876561.1| hypothetical protein ARALYDRAFT_486522 [Arabidopsis lyrata subsp.
lyrata]
gi|297322399|gb|EFH52820.1| hypothetical protein ARALYDRAFT_486522 [Arabidopsis lyrata subsp.
lyrata]
Length = 438
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 137/276 (49%), Gaps = 20/276 (7%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ E L +R D R L R TI G GS+ ++G T ++ + +++ P
Sbjct: 17 KFVETALQSELRVDGRGLYDYRKLTIKFGKEY---GSSEVQLGQTHVMGFVTAQMVQPYK 73
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P+EG +SI P+ P PGRP E+A + + + + S ++ + L ++ GK
Sbjct: 74 DRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDTESLCILAGKM 133
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDGK-IVMLPEEQKEENSE 202
W V +D++ LD G L DAA ++A+AA + P TV ++G+ +++ P E E
Sbjct: 134 VWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVIIHPPE------E 187
Query: 203 KEPVNKEKRKLTLGGIP--FSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
+EP+ L + +P F+ N ++ DPT EE++M +TV ++++ + ++
Sbjct: 188 REPL-----PLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAI 242
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
KPG + S + C+ L R +I+ E +
Sbjct: 243 QKPGEEGVN-QSVILHCLRLASSRAAATTKIIREEV 277
>gi|340515703|gb|EGR45955.1| predicted protein [Trichoderma reesei QM6a]
Length = 296
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 121/270 (44%), Gaps = 17/270 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
++E +R D R L R +S G L K +LA + EV P + P +G
Sbjct: 19 ISEGLRLDGRKLDEFRRLELSFGDEYGVADVKLGKTRHVQLLAKVSAEVTVPFADRPFDG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
I + P+ +P RP E ++A+ L TI SG ++ + L LV G+ W V +
Sbjct: 79 IFQITSELGPMVAPSYEVNRPTETEVLLARLLEKTIRRSGALDTESLCLVAGQKCWSVRV 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQKEENSEKEPVNKEK 210
D++ L ADG L D+A + VAA + + P S++ + V P +E+EPV
Sbjct: 139 DLHVLSADGNLIDSACFAVVAALRHFRKPDTSIEGETLTVYTP-------AEREPV---- 187
Query: 211 RKLTLGGIPFSLTCIL---HKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAV 267
L+ PF T + ++ D T EE + T L+ ++ + K GG
Sbjct: 188 -PLSWLHSPFCATFDFFGDEGDIVVVDTTWLEEQLRVASCTFSLNKHGEICQISKLGGRP 246
Query: 268 LAYTSAVQDCIALTRQRVKELHQILEEAIS 297
+ T +Q C + +VKE +L+ ++
Sbjct: 247 IEATLVIQ-CAQMALAKVKEFTDLLDAKLA 275
>gi|296812847|ref|XP_002846761.1| exosome complex exonuclease RRP45 [Arthroderma otae CBS 113480]
gi|238842017|gb|EEQ31679.1| exosome complex exonuclease RRP45 [Arthroderma otae CBS 113480]
Length = 292
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 128/263 (48%), Gaps = 17/263 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +++R D R + R+ ++ G G+ ++G T +L I E+ TP E +G
Sbjct: 19 LHKNVRLDGRKFDQLRSVDLTFG---EEHGTVKVQLGKTAVLVRISAELTTPRPERDCDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P GRP+E +++ L + S ++ + L + G+ W +
Sbjct: 76 IFTVVVELNDMALPGYETGRPSELEVSLSRTLDKIVRRSNALDTESLCIAKGRICWNIRA 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
DI+ LD DG L DA+ L+ +A + ++P ++ DG++ + E EK PV+
Sbjct: 136 DIHILDCDGGLIDASCLAIMAGLLHFRLPESTVRDGEVTVFSME------EKVPVS---- 185
Query: 212 KLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
L L IP ++T L+ +L D T+ EE + E + + LD + ++ KP GA
Sbjct: 186 -LNLTKIPLAVTFNLYDEGRIVLLDATAGEEVVSEGSLVIALDKTGEIALYSKPDGAPAD 244
Query: 270 YTSAVQDCIALTRQRVKELHQIL 292
+ V C + +V+EL++++
Sbjct: 245 PVNMVT-CSTVALAKVRELNKLI 266
>gi|357149446|ref|XP_003575115.1| PREDICTED: exosome complex component RRP45-like isoform 2
[Brachypodium distachyon]
Length = 394
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 18/258 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ E+ L +R D R R I G DGSA ++G T ++ + +++ P +
Sbjct: 15 FIEQALQSDLRVDGRRPFDFRKLKIVFG---REDGSAEVELGETRVMGYVTAQLVQPYKD 71
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P EG ++I P+ P PGRP EAA + + + + S ++++ L +V GK
Sbjct: 72 RPSEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGKHV 131
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDGKIVMLPEEQKEENSEKE 204
W + +D++ LD G L DAA ++A+AA S + P TV +DG+ V + +
Sbjct: 132 WSLRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGEDGQQVTV----------HD 181
Query: 205 PVNKEKRKLTLGGIPFSLTCILH--KNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
P ++ LT+ +P ++T N ++ DPT +EE++M +T ++S+ + S+ K
Sbjct: 182 PEVRDPLPLTIHHLPIAVTFAYFGDGNIMVIDPTYKEEAVMGGRMTATINSNGDVCSIQK 241
Query: 263 PGGAVLAYTSAVQDCIAL 280
GG + +S + C+ +
Sbjct: 242 AGGEGV-MSSVIMQCLRI 258
>gi|85087002|ref|XP_957805.1| hypothetical protein NCU00334 [Neurospora crassa OR74A]
gi|28918900|gb|EAA28569.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 297
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 125/270 (46%), Gaps = 24/270 (8%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E IR D R + R ++ G G A +G T +LA EV P + P +G
Sbjct: 22 EQIRLDGREFDQYRPLELTFG---DEYGVANVSLGKTKILAKASAEVTVPFADRPLDGIF 78
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDI 153
+I + P+ +P RP E ++++ L T+ SG ++ + L LV G+ W V +D+
Sbjct: 79 TIATELSPMAAPHFEVNRPTETEVLLSRLLEKTVRRSGALDTESLCLVAGQKCWSVRVDV 138
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQKEENSEKEPVNKEKRK 212
+ L DG L DAA + VAA + + P S+++G + V P +E+EPV
Sbjct: 139 HVLSHDGNLTDAACFAVVAALRHFRKPDTSMENGVLTVYTP-------AEREPV------ 185
Query: 213 LTLGGI--PFSLTCIL---HKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAV 267
LG + PF +T L D EE + VT+ L+ ++ + K GG
Sbjct: 186 -PLGWLHSPFCVTWSFFGEEGETALLDADWMEEQVRVASVTISLNRHGEICQIAKLGGVP 244
Query: 268 LAYTSAVQDCIALTRQRVKELHQILEEAIS 297
+ + +Q C ++ +VKE L++ ++
Sbjct: 245 VEAVALLQ-CTSVALTKVKEFSTYLDDKLA 273
>gi|356498705|ref|XP_003518190.1| PREDICTED: exosome complex component RRP42-like [Glycine max]
Length = 286
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 135/290 (46%), Gaps = 21/290 (7%)
Query: 22 LFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVM 81
L + + +A+ +R D R R ++ G + +GSA ++G+T ++A++K E+
Sbjct: 6 LGETHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQTNGSARVRMGATDVIASVKAELG 65
Query: 82 TPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI--------SSSGM- 132
PSL PD+G VSI CS P +A +LS+ + S G
Sbjct: 66 KPSLLQPDKGKVSIYID----CSSTAEPAFEGRGGDELAAELSNALQHCLLGGKSGEGAG 121
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVML 192
I+L L +V GK W +Y+D + +DG L DA + AA SN IP V + G
Sbjct: 122 IDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVEVAAGT---- 177
Query: 193 PEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLD 252
+E+ E + ++E + +P +T + + D TSEEES M + V++ ++
Sbjct: 178 ---SNDEHPEVDVSDEEFLQFDTSRVPVIVTLTKVGRHYIVDATSEEESQMSSGVSISVN 234
Query: 253 SSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
+ + K GG L S + D I++ + ++L L+ I+ E D
Sbjct: 235 RQGHICGITKRGGVGLD-PSIILDMISVAKHVSEQLINKLDSEIASAEAD 283
>gi|357145083|ref|XP_003573518.1| PREDICTED: exosome complex component RRP42-like [Brachypodium
distachyon]
Length = 286
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 140/283 (49%), Gaps = 16/283 (5%)
Query: 26 RYFERH-LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
++F R +A+ +R D R+ + R + G + A+GSA ++G+T ++A++K E+ P+
Sbjct: 9 KHFIRGGIAQDLRADGRTRLQFRPVIVETGVIPQANGSARVRLGATEVIASVKAELGKPT 68
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAE---AAPVVAKQ---LSDTISSSGMINLKEL 138
+ PD+G VSI P +P+ GR +E A VA Q L + I+L L
Sbjct: 69 VLHPDKGKVSIYVDCSPTAAPIFE-GRGSEDLSAELSVALQRCLLGGKSGAGAAIDLSSL 127
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
++ GKA W +Y+D + +DG L DA + A S+ IP V+ V L E
Sbjct: 128 IVLEGKACWDLYVDGLVVSSDGNLVDALAAAIKVALSDTGIPKVN------VSLNAETDG 181
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLV 258
E E + ++E + +P +T + + D TSEEES M + ++V ++ Q+
Sbjct: 182 E-PEVDVSDEEFLQFDTSSVPVIVTLTKVGKHYIVDATSEEESQMSSALSVSVNRRGQIC 240
Query: 259 SLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEI 301
L K GG L T + D I++ + + +L+ I+ E+
Sbjct: 241 GLTKRGGTGLDPT-IIFDMISVAKHVSQRFISLLDSEIAAAEV 282
>gi|255580609|ref|XP_002531128.1| exosome complex exonuclease rrp45, putative [Ricinus communis]
gi|223529292|gb|EEF31262.1| exosome complex exonuclease rrp45, putative [Ricinus communis]
Length = 463
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 139/275 (50%), Gaps = 18/275 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ E L +R D R+ R TI G DGS+ ++G T ++ + +++ P
Sbjct: 17 KFIESALDSDLRIDGRNSHEFRKLTIKFG---REDGSSEVQLGQTHVMGFVTSQLVQPYR 73
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P+EG +SI P+ P PGRP E+A + + + + S ++ + L ++ GK
Sbjct: 74 DRPNEGSLSIFSEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKL 133
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL--DDGKIVMLPEEQKEENSEK 203
W + +D++ LD G L DAA ++A+AA + P +L +DG+ V++
Sbjct: 134 VWAIRIDLHILDNGGNLVDAANIAALAALLTFRRPECTLGGEDGQQVIV----------H 183
Query: 204 EPVNKEKRKLTLGGIPFSLTCILH--KNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
P KE L + +P ++T ++ ++ DPT EE++M +TV ++++ + S+
Sbjct: 184 PPEVKEPLPLIVHHLPIAVTFAFFSSEHTMVVDPTHNEEAVMTGRMTVTVNANGDICSIQ 243
Query: 262 KPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
K GG + S + C+ + + + + + +++A+
Sbjct: 244 KAGGEGV-MQSRIMHCLRVASRNAESITKKIKDAV 277
>gi|310789357|gb|EFQ24890.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001]
Length = 298
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 127/274 (46%), Gaps = 18/274 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + L +++R D R + R ++ G G A ++G T +LA + EV P +
Sbjct: 14 FVTQALKDNLRLDGREFDQYRKAQLTFG---DEFGVANVELGKTRVLAKVSAEVTVPYTD 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P EG I + P+ SP RP EA ++++ L TI SG ++ + L L+ G+
Sbjct: 71 RPFEGIFQITSELSPMASPAFEVNRPTEAEVLLSRILEKTIRRSGALDTESLCLIAGQKV 130
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W V D++ L DG L DAA L+ +AA + + P S + + + +E+EPV
Sbjct: 131 WSVRADVHVLSHDGNLTDAACLAVIAALRHFRKPDTSNEGQSLTIFTP------AEREPV 184
Query: 207 NKEKRKLTLGGIPFSLTCILHKN---YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
L+ PF +T + L D EE + + +TV L+ ++ + K
Sbjct: 185 -----PLSWLHSPFCVTFSFFGDEGEITLVDANWIEEQLRTSSMTVSLNKHGEISQISKL 239
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
GG + + + C + Q+ K+ +++E ++
Sbjct: 240 GGTPIEAVTLLH-CGNVALQKSKDFSTLVDEKLA 272
>gi|168031159|ref|XP_001768089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680727|gb|EDQ67161.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 276
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 137/271 (50%), Gaps = 20/271 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+ E R D R+ R I DGS ++G T +LA +K E+ P + +EG
Sbjct: 20 IREEQRIDGRTPFDYRRLQIKF---LKEDGSVEVQLGQTRVLAVVKGEITQPYPDRGNEG 76
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++I P+ P PGRP+E A + + + + S ++ + L ++ G++ W + +
Sbjct: 77 SLAIFTEFSPMGDPAFEPGRPSEMAVELGRIIDRGLRESRAVDTESLCILSGRSVWSIRV 136
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDG-KIVMLPEEQKEENSEKEPVNK 208
DI+ LD G L DAA L+A+AA + + P TV DDG +I++ P E +EPV
Sbjct: 137 DIHILDNYGNLVDAANLAALAALLSYRRPECTVGGDDGQQIIVHPPEV------REPVG- 189
Query: 209 EKRKLTLGGIPFSLTCILH--KNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
L + +P ++T N+ + DP +EE +M +T+ ++S ++ ++ K GG
Sbjct: 190 ----LIIHHLPIAVTFAFFGDGNFQVLDPNLKEEEVMGGRITITINSQGEICAVQK-GGG 244
Query: 267 VLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
V S V C+ + + + + + L++A+S
Sbjct: 245 VGVSASEVMRCLRIAAAKAQSMTETLKKAVS 275
>gi|307214871|gb|EFN89739.1| Exosome complex exonuclease RRP45 [Harpegnathos saltator]
Length = 390
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 120/254 (47%), Gaps = 18/254 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + + E R D R L AR+ I G S G + +G T +A + ++ P +
Sbjct: 13 FVNKCIQEETRLDGRRLLEARSVKIHFG---SNWGCCMVSLGHTKAIAQVSCDIQQPKIS 69
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P+EG + I+ + + + GR +EAA ++++QL S ++L+ L +V K
Sbjct: 70 RPNEGMIHINVELSQLAAQNFESGRQSEAAVMISRQLEKCFKDSKCVDLESLCIVADKKV 129
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W + +DI ++ DG L D A ++ +AA S+ P V+ +I++ P +K+ S
Sbjct: 130 WNIRVDINIINHDGNLIDCASIATLAALSHFHRPDVTSTGEEIIIHPASEKDFLS----- 184
Query: 207 NKEKRKLTLGGIPFSLTCI-LHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
LTL P ++ I + DPT EE I +T+ ++S +L SL
Sbjct: 185 ------LTLFHYPVCISFITFESGNTIMDPTYIEERIGVARLTLGVNSYKELCSL---NF 235
Query: 266 AVLAYTSAVQDCIA 279
L T +V+D I+
Sbjct: 236 DYLTKTMSVKDVIS 249
>gi|296423319|ref|XP_002841202.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637437|emb|CAZ85393.1| unnamed protein product [Tuber melanosporum]
Length = 293
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 115/236 (48%), Gaps = 16/236 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + +R D R L R ++ G G A ++G T +LA + EV+ P + P +G
Sbjct: 19 LNQKLRIDGRDLDSFRELELNFG---DDYGLADVQLGKTRVLARVSAEVVKPFTDRPFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + P+ SP PGR E ++++ + I S ++ + L +V G+ W +
Sbjct: 76 IFTITTELGPMASPAFEPGRQTEQEVLLSRLIEKAIRRSNALDTESLCIVAGQKCWQIRA 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ L DGAL DA+ ++ VAA + + P VS++ K+ + +E+ PV
Sbjct: 136 DVHFLSHDGALVDASCIAVVAALQHFRRPDVSVEGEKVTI------HTMTERIPV----- 184
Query: 212 KLTLGGIPFSLT--CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
L++ +P +T L L D T +EE + + +T+ L+ +L + K GG
Sbjct: 185 PLSILHVPICVTFSFYLDGEVCLVDATLQEEQLRQGDMTITLNKFGELCQIAKAGG 240
>gi|52549122|gb|AAU82971.1| tRNA nucleotidyltransferase [uncultured archaeon GZfos24D9]
Length = 260
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 121/264 (45%), Gaps = 22/264 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D R R+ + + ADGS +IG T +L +K+E P +
Sbjct: 13 YVYDLIEKGKRADGRGFLDFRDIIVERDLIKKADGSTRVQIGDTVVLVGVKVEPGAPFPD 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+P++G + + + P+ SP G P E + +A+ + I S I+L++L + G+
Sbjct: 73 TPNKGILMTNAELVPLASPEFESGPPNEDSIELARVVDRGIRGSETIDLEKLCIEEGEKV 132
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
WMV++DI+ LD DG L DAA L A+ + N+ IP E+ +
Sbjct: 133 WMVFIDIHTLDNDGNLVDAAALGAITSLLNVTIP--------------------YERYGL 172
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
E L + P ++T + +L DP EES + +TV+ ++ + L K G
Sbjct: 173 TGED-TLQIRDTPVAVTVVEIGGNLLVDPNVYEESAATSKLTVISNADGSISGLQKSGST 231
Query: 267 VLAYTSAVQDCIALTRQRVKELHQ 290
L V+ I + ++ +E+ +
Sbjct: 232 GLTEEKIVK-MIEIGIEKAREIRE 254
>gi|449499646|ref|XP_002187964.2| PREDICTED: exosome complex component RRP45 [Taeniopygia guttata]
Length = 395
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 123/235 (52%), Gaps = 14/235 (5%)
Query: 64 LAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQL 123
+ ++G T +LA + E++ P P EG + + + P+ +P + PGR +E + + L
Sbjct: 1 MVELGRTRVLAQVSCELVPPKPSRPTEGVLFFNLELSPMAAPGLEPGRQSELVVSLNRLL 60
Query: 124 SDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS 183
+ S I + L +V G+ W + LD++ L+ DG + DAA ++ + A + + P VS
Sbjct: 61 ERCLRDSKCIETESLCVVAGEKVWQIRLDMHLLNHDGNITDAASIAGIVALCHFRRPDVS 120
Query: 184 LDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLT-CILHK-NYILADPTSEEES 241
+ ++ + E E++PV L++ +P ++ H+ Y+L DPT EE
Sbjct: 121 VQGEEVTVYTAE------ERDPV-----PLSIHHMPICVSFAFFHQGTYLLVDPTEREER 169
Query: 242 IMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+M+ L+ + ++ +++ ++ + G V+ + C +T +V E+ +++++A+
Sbjct: 170 VMDGLLVIAMNKHHEICTI-QSSGVVMLLPDQILRCSKITAVKVAEITELIQKAL 223
>gi|15232342|ref|NP_191609.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|42572741|ref|NP_974466.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|334186154|ref|NP_001190143.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|7287998|emb|CAB81836.1| nucleolar autoantigen-like protein [Arabidopsis thaliana]
gi|28393589|gb|AAO42214.1| putative nucleolar autoantigen protein [Arabidopsis thaliana]
gi|28973593|gb|AAO64121.1| putative nucleolar autoantigen protein [Arabidopsis thaliana]
gi|113196170|gb|ABI31441.1| CER7 [Arabidopsis thaliana]
gi|332646547|gb|AEE80068.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|332646548|gb|AEE80069.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|332646549|gb|AEE80070.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
Length = 438
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 137/276 (49%), Gaps = 20/276 (7%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ E L +R D R L R TI G GS+ ++G T ++ + +++ P
Sbjct: 17 KFVETALQSELRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMGFVTAQLVQPYK 73
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P+EG +SI P+ P PGRP E+A + + + + S ++ + L ++ GK
Sbjct: 74 DRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKM 133
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDGK-IVMLPEEQKEENSE 202
W V +D++ LD G L DAA ++A+AA + P TV ++G+ +++ P E E
Sbjct: 134 VWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVIIHPLE------E 187
Query: 203 KEPVNKEKRKLTLGGIP--FSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
+EP+ L + +P F+ N ++ DPT EE++M +TV ++++ + ++
Sbjct: 188 REPL-----PLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAI 242
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
KPG + S + C+ L R +I+ E +
Sbjct: 243 QKPGEEGVN-QSVILHCLRLASSRAAATTKIIREEV 277
>gi|449271151|gb|EMC81699.1| Exosome complex exonuclease RRP45, partial [Columba livia]
Length = 389
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 119/230 (51%), Gaps = 16/230 (6%)
Query: 72 MLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSG 131
+LA + E++ P P EG + +F + P+ +P PGR E V + + + +S
Sbjct: 2 VLAQVSCELVPPKPNRPAEGILFFNFELSPMAAPGFEPGRQPELLVKVNRLIERCLRNSK 61
Query: 132 MINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-V 190
++ + L +V G+ W + LD++ L+ DG + DAA ++ + A + + P VS+ ++ V
Sbjct: 62 CVDTESLCVVAGEKVWQIRLDLHLLNHDGNIIDAASIAGIVALCHFRRPDVSVQGEEVTV 121
Query: 191 MLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVT 248
PE E++PV L++ +P ++ + Y+L DP+ EE +M+ L+
Sbjct: 122 YTPE-------ERDPV-----PLSIHHMPICVSFAFYHQGTYLLVDPSEREERVMDGLLV 169
Query: 249 VVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISG 298
+ ++ ++ ++ GG +L T V C +T +V E+ +++++A+
Sbjct: 170 IAMNKHGEICTIQSSGGIMLV-TDQVLRCSNITAVKVAEITELIQKALEN 218
>gi|349804455|gb|AEQ17700.1| putative exosome component 8 [Hymenochirus curtipes]
Length = 164
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 74/114 (64%), Gaps = 1/114 (0%)
Query: 24 PLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTP 83
PL Y+ + L E+ RPD R LS R TTI++G++ +ADGSAL K+G+ T++ IK E P
Sbjct: 3 PLEYYRKFLKENCRPDGRDLSEFRTTTINVGSITTADGSALVKLGNCTVVCGIKAEFTAP 62
Query: 84 SLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
++P++G + + + P+CS RPG P E A V ++ ++D I +S M+ LKE
Sbjct: 63 PSDAPNKGYIVPNVDLTPLCSSNFRPGPPGEEAQVASQFIADVIDNSQML-LKE 115
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 226 LHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
L +L DPT EEE + L+TVV+D +L +L KPGG+ L+
Sbjct: 117 LCDTSLLVDPTGEEEILATGLLTVVVDEDERLCALRKPGGSALS 160
>gi|453085196|gb|EMF13239.1| exoribonuclease [Mycosphaerella populorum SO2202]
Length = 299
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 116/236 (49%), Gaps = 16/236 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L+++IR D R + R ++ G G A +IG T +L I EV+ P ++ +G
Sbjct: 19 LSQNIRIDGRQFDQFRPIDLAFG---DNYGQADVRIGKTRVLVNISAEVVVPYVDRKFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + PI SP GR + ++++ L TI SG ++ + L +V G+ + +
Sbjct: 76 VFTISTELSPIASPAFEVGRQDQTEIILSRILEKTIRRSGALDTESLCIVAGQKCFHIRA 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
DI+ LD DG L DA+ L+ VAA + + P V + ++ + E+EPV
Sbjct: 136 DIHVLDHDGNLVDASCLALVAALMHFRRPDVEVHGEEVTVFSVR------EREPV----- 184
Query: 212 KLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
+L++ PF +T ++ +L D T EE + E + + ++ ++ + K GG
Sbjct: 185 RLSMQHQPFCVTMSYYEGGEIVLQDATLLEEHVREGEIVISINRFGEVCQIAKYGG 240
>gi|345569202|gb|EGX52070.1| hypothetical protein AOL_s00043g460 [Arthrobotrys oligospora ATCC
24927]
Length = 298
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 133/283 (46%), Gaps = 35/283 (12%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +++R D R++ R+ S G G ++G T +LA I E++ P + P EG
Sbjct: 19 LKQNLRVDGRNIHSFRDIQFSFG---DDYGFVDVRLGKTRVLARISAEIIRPRPDRPFEG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I M P+ SP GRP + +++ L +I S ++L+ L +V + W +
Sbjct: 76 TFTISTEMGPMASPSFEVGRPTDLDNTLSRLLEKSIRRSTALDLESLCIVTAQRVWSLRA 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ L DG L D A ++ + A ++ ++P V++ I + P +E+ PV
Sbjct: 136 DLHFLSHDGNLIDTACIATITALAHFRLPVVTVSGEDITIHPV------TERVPV----- 184
Query: 212 KLTLGGIPFSLT-------------CILHKNYILADPTSEEESIMETLVTVVLDSSNQLV 258
L+L P +T C+L D T++EE++ E +TV ++ + ++
Sbjct: 185 PLSLLHWPICVTFSFFGEDDDGEMVCVL-------DATAQEEALREGDMTVTVNKNGEVC 237
Query: 259 SLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEI 301
+ K GG V + C ++VK + +++ A+ G EI
Sbjct: 238 QISKSGG-VAVEAETLMKCARKAAEKVKGIDKLIASALRGDEI 279
>gi|167045226|gb|ABZ09886.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8O8]
Length = 273
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 125/264 (47%), Gaps = 15/264 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D R+L R +I +G + A+GSA ++G T ++A +K++ P + ++G
Sbjct: 19 LQEGKRIDGRALDEHRPLSIDVGVIPHANGSARVRLGDTEVVAGVKIQPDRPFPDMGEKG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ P+ P V G P +A+ + I SGMI+L ++ LV K+ ++
Sbjct: 79 IFICTAEILPLAHPSVETGPPQPYVIEIARVVDRGIRESGMIDLSQMVLVKDKSVIGLFA 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D D DG LFDA ++ AA ++P + D K V+ V+ E+
Sbjct: 139 DNVVTDHDGNLFDACSYASTAAVLTSKMPKWEMKDDKPVL--------------VDGEES 184
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
+ IP S+T L YI+ DP +E ++ +T+ +S +V+L K G + +
Sbjct: 185 DTPITTIPVSVTMGLIGEYIIVDPNLDEWECLDARITITTNSDGNIVALQKGGSSGFSLD 244
Query: 272 SAVQDCIALTRQRVKELHQILEEA 295
++ C L+ E+ +I+++
Sbjct: 245 QLIK-CSELSISTGPEIREIIKQT 267
>gi|358396358|gb|EHK45739.1| hypothetical protein TRIATDRAFT_140053 [Trichoderma atroviride IMI
206040]
Length = 293
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 123/265 (46%), Gaps = 18/265 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
++E +R D+R L + R +S G G A K+G T +LA + EV P + P +G
Sbjct: 19 ISEGLRLDSRKLDQFRPLELSFG---DEYGVADVKLGKTRVLAKVSAEVTVPFSDRPFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
I + P+ +P RP E ++A+ L T+ SG ++ + L L+ G+ W V +
Sbjct: 76 IFQITSELGPMVAPSFEVNRPTETEVLLARLLEKTVRRSGALDTESLCLIAGQKCWSVRV 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ L ADG L D++ L+ VAA + + P S++ + + +E+EPV
Sbjct: 136 DLHILSADGNLIDSSCLAVVAALRHFRRPDTSIEGETLTIYT------AAEREPV----- 184
Query: 212 KLTLGGIPFSLTCILH---KNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
L+ PF T +L D T EE + VT L+ ++ + K GG +
Sbjct: 185 PLSWLHSPFCTTFDFFGEDGEIVLVDTTWLEEQLRVGSVTFSLNKHGEICQISKLGGKPV 244
Query: 269 AYTSAVQDCIALTRQRVKELHQILE 293
T +Q C + KE +++
Sbjct: 245 EATLIIQ-CAQTALAKSKEFTDLVD 268
>gi|357518287|ref|XP_003629432.1| Exosome complex exonuclease RRP42 [Medicago truncatula]
gi|355523454|gb|AET03908.1| Exosome complex exonuclease RRP42 [Medicago truncatula]
Length = 286
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 128/283 (45%), Gaps = 21/283 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ E +A +R D R R + G + A+GSA +IG+T ++A++K E+ PSL
Sbjct: 11 FIEGGIAHDLRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAELGKPSLM 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI---------SSSGMINLKE 137
PD+G VSI CS P A ++ LS+ + + I+
Sbjct: 71 QPDKGKVSIYID----CSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGAAIDRSS 126
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L +V GK W +Y+D + +DG L D + A SN IP V + G
Sbjct: 127 LVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPKVQIAAGA-------SS 179
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
+E E + +++ + GIP +T + + D T EEES M + V++ ++ +
Sbjct: 180 DEQPEVDVSDEDFMQFDTSGIPVIVTLTKVGKHYIVDATPEEESQMSSAVSISINRQGHI 239
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
+ K GGA L S + D +++ + ++L L+ I+ E
Sbjct: 240 CGVTKRGGAGLD-PSVILDMVSVAKHVSEQLINKLDSEIASAE 281
>gi|388511583|gb|AFK43853.1| unknown [Medicago truncatula]
Length = 286
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 128/283 (45%), Gaps = 21/283 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ E +A +R D R R + G + A+GSA +IG+T ++A++K E+ PSL
Sbjct: 11 FIEGGIAHDLRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAELGKPSLM 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI---------SSSGMINLKE 137
PD+G VSI CS P A ++ LS+ + + I+
Sbjct: 71 QPDKGKVSIYID----CSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGAAIDRSS 126
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L +V GK W +Y+D + +DG L D + A SN IP V + G
Sbjct: 127 LVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPKVQIAAGA-------SS 179
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
+E E + +++ + GIP +T + + D T EEES M + V++ ++ +
Sbjct: 180 DEQPEVDVSDEDFMQFDTSGIPVIVTLTKVGEHYIVDATPEEESQMSSAVSISINRQGHI 239
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
+ K GGA L S + D +++ + ++L L+ I+ E
Sbjct: 240 CGVTKRGGAGLD-PSVILDMVSVAKHVSEQLINKLDSEIASAE 281
>gi|388522149|gb|AFK49136.1| unknown [Lotus japonicus]
Length = 286
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 133/289 (46%), Gaps = 18/289 (6%)
Query: 22 LFPLRYFERH-----LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAI 76
+ L ERH +A+ +R D R R + G + A GSA ++G+T ++A++
Sbjct: 1 MVGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASV 60
Query: 77 KMEVMTPSLESPDEGCVSIDFHMPPICSPLV--RPGRPAEAAPVVAKQLSDTISSSGM-- 132
K E+ PSL PD+G VSI P R G A VA Q S + SG
Sbjct: 61 KAELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRSLLGAKSGAGA 120
Query: 133 -INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVM 191
I+L L +V GK W +Y+D + +DG L DA + AA SN IP V + G
Sbjct: 121 GIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVQVAAGA--- 177
Query: 192 LPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVL 251
+E E E + E + G+P +T + + D TSEEES M + V++ +
Sbjct: 178 ----SGDEKPEVEISDDEFLQFDTSGVPVIVTLTKVGRHSIVDATSEEESQMSSAVSISV 233
Query: 252 DSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
+ + + K G+V S V D I++ + ++L L+ I+ E
Sbjct: 234 NRQGHICGITKR-GSVGLDPSIVLDMISVAKHVSEQLINKLDSEIASAE 281
>gi|25144570|ref|NP_741217.1| Protein EXOS-9, isoform a [Caenorhabditis elegans]
gi|351062706|emb|CCD70741.1| Protein EXOS-9, isoform a [Caenorhabditis elegans]
Length = 434
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 131/268 (48%), Gaps = 17/268 (6%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D RSL R+ + +GA G+A+ IG+T ++AA+ E+ PS P +G ++ID
Sbjct: 23 RFDFRSLEEFRDVKLVVGAEV---GTAICTIGNTKVMAAVSAEIAEPSSMRPHKGVINID 79
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ + R + + L I S I+++ L + GK W + +D+ L
Sbjct: 80 VDLSPMANYANEHDRLGSKGMELIRLLELIIRDSRCIDVEALCIRAGKEIWKIRVDVRIL 139
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG+L D A L+A+ A + + P V+L+ ++ E EK PV L +
Sbjct: 140 DEDGSLLDCACLAAITALQHFRRPNVTLEPHHTLIYSE------YEKAPV-----PLNIY 188
Query: 217 GIPFSLTC-ILHKNYILA-DPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAV 274
+P T +L K I+ DPT +E + ++ + V + ++ +L++ +L+ T +
Sbjct: 189 HMPICTTIGLLDKGQIVVIDPTDKETACLDGSIVVACNKRREVCALHQSTNLILS-TKQI 247
Query: 275 QDCIALTRQRVKELHQILEEAISGMEID 302
+ C+ L R + L ++ + I +I+
Sbjct: 248 ERCVKLAMARAEALTAVVSDVIKQDQIE 275
>gi|119872347|ref|YP_930354.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum islandicum
DSM 4184]
gi|119673755|gb|ABL88011.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum islandicum DSM
4184]
Length = 274
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 135/269 (50%), Gaps = 30/269 (11%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
LA R D R R RN I + +ADGSA K+G T ++A +K+ + P ++PDEG
Sbjct: 24 LATKYRIDGREPERIRNIEIKTSVIKTADGSAEVKLGKTHVVAGVKVSLGQPFPDAPDEG 83
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ ++ + P SP G P E A +A+ + I G ++ K+L + GGK A+++++
Sbjct: 84 VLVVNAEVLPHASPYTEVGPPDEFAIELARVIDRGIRHCGYVDFKKLVVEGGK-AYVLWV 142
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D+Y ++ DG L DAA L+AVAA + Q+P V D+ + K + + K P+ E
Sbjct: 143 DLYVINDDGNLIDAANLAAVAALKDTQLPVVVKDEQGV-------KLDRNNKTPLPIEVS 195
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
K P +++ + DPT EEE ++ +T + S +++V++ K G +T
Sbjct: 196 KA-----PIAVSVGKIGGVLFLDPTFEEELSLDGRITFTI-SEDRIVAVQKTIG---TFT 246
Query: 272 SAVQDCIALTRQRVKELHQILEEAISGME 300
S +EL LE A G E
Sbjct: 247 S-------------QELEMALELAWKGKE 262
>gi|449298658|gb|EMC94673.1| hypothetical protein BAUCODRAFT_555446 [Baudoinia compniacensis
UAMH 10762]
Length = 333
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 148/329 (44%), Gaps = 67/329 (20%)
Query: 17 DAFRRLFPLRYFERHL--AESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLA 74
+ F +L P + + HL +SIRP+ R R T++ G+++ ++GSA+ ++G T ++
Sbjct: 16 ETFAKLTPRPFLQAHLQHKDSIRPNGRRPEEVRKPTVNTGSLSYSNGSAVVRVGDTAVVC 75
Query: 75 AIKMEVMTPS-LESP------------DEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAK 121
++ E++ S + P D G + + + CSP PG P ++A+
Sbjct: 76 GVRAEILLASDIPHPPNGDADAEHLLEDLGLLVPNVELSTGCSPTHLPGNPPG---ILAQ 132
Query: 122 QLSDTISS----SGMINLKELSL-----------------VGGKAAWMVYLDIYCLDADG 160
LS I S S ++NL++L + KA W +Y+DI C+ DG
Sbjct: 133 ALSYRILSLLHVSDLVNLQDLQIEYTVPQTDDDLPDAGPKTVVKAYWTLYIDILCIAMDG 192
Query: 161 ALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPF 220
FDAA + +AA + +P D + ++L P+ E +L L +P
Sbjct: 193 NPFDAAWTAVIAALRDTSLPRAWWDPDREIIL----------CSPLEAEASRLRLRNLPM 242
Query: 221 SLTCILH------------KNYILADPTSEEESIMETLVTVVLD-----SSNQLVSLYKP 263
+ T ++ ++++LADP EE + VTVVL + ++ + K
Sbjct: 243 ASTFAVYSTSSPLKQRAHAESWVLADPDGFEEDVCHESVTVVLSHHMDGKKSGILRVEKH 302
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQIL 292
GG ++ + ++ C+ TR R E +L
Sbjct: 303 GGGIVDNVALLR-CVQATRNRAGEWCAVL 330
>gi|387015828|gb|AFJ50033.1| Exosome complex exonuclease RRP45-like [Crotalus adamanteus]
Length = 434
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 136/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G G + ++G T +L + E+++P
Sbjct: 12 RFLLRAIEERKRLDGRQCYDYRNLRISFGVDY---GCCIVELGKTRVLGQVSCELVSPKP 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + P+ SP PGR +E + + L + +S ++ + L +V G+
Sbjct: 69 NRATEGILFFNLELSPMASPAFEPGRQSELLVKLNRLLERCLRNSKCVDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ +G + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHNGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP+ +EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPSEQEERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C +T +V E+ +++++A+
Sbjct: 238 GGIMLLKEQVLR-CSKITGVKVAEITELIQKAL 269
>gi|380025250|ref|XP_003696390.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP45-like [Apis florea]
Length = 411
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 132/279 (47%), Gaps = 23/279 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + + + IR D RSL AR I AS GS + +G T ++A + ++ P
Sbjct: 13 FVNKSVEQGIRLDGRSLLEARPVKIYF---ASNWGSCMVLLGQTRVIAQVTCDIQQPKTS 69
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P+EG + I+ + P+ + GR +E + ++++QL S I+L+ L ++ K
Sbjct: 70 RPNEGMLHINVELNPMAAQHFDSGRQSEISILISRQLEKCYQDSKCIDLESLCIIADKKV 129
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W + +DI ++ D L D A ++ +AA S+ P V+ + I++ P SEK+P+
Sbjct: 130 WNLRVDINVINHDXNLIDCASIATLAALSHFHRPDVTSNGEDIIVHP------FSEKDPL 183
Query: 207 NKEKRKLTLGGIPFSLTCI-LHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
LTL P ++ I + DPT EE I +T+ ++S +L SL+
Sbjct: 184 -----PLTLYHYPVCVSFITFESGNTVMDPTYLEERIGVAQLTLGINSYRELCSLH---F 235
Query: 266 AVLAYTSAVQDCIA-----LTRQRVKELHQILEEAISGM 299
L T V+D I+ T V+ + QI E S +
Sbjct: 236 NYLTKTMTVEDVISAVSSYATNYAVQLVQQIKETVFSDI 274
>gi|68074995|ref|XP_679414.1| exosome complex exonuclease [Plasmodium berghei strain ANKA]
gi|56500153|emb|CAI00593.1| exosome complex exonuclease, putative [Plasmodium berghei]
Length = 511
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 133/272 (48%), Gaps = 16/272 (5%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTIS-MGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
+F +L +R D R+ +RN +I +G G+ IG+T ++ I E++ P
Sbjct: 9 NFFWCNLKNKLRLDGRNFEDSRNVSIYFLGDY----GNVEVSIGNTKVVCKITSEIVKPY 64
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGK 144
+ P+EG + I+ + + + ++ + + +S ++N + L ++ K
Sbjct: 65 DKKPNEGIIKINLDVESF-NTYNDISKISDECLEIKNLIERIFKASNILNFESLCIIPYK 123
Query: 145 AAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKE 204
W + ++I ++ DG L+D+ LSA +A + + +V +D+ V++ EE E N
Sbjct: 124 KVWCLLINITVIENDGNLYDSCYLSAYSALLHFRNSSVDIDNTGNVIIDEE--EVNYTSL 181
Query: 205 PVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
V+ T F C L DP+ EE M + +++ ++ + L+S+ KPG
Sbjct: 182 SVHNSPILTTFAYFNFEEIC-------LIDPSLYEEEFMSSKLSIAINKNENLISILKPG 234
Query: 265 GAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
G ++Y +Q I L ++RVK + +IL++A+
Sbjct: 235 GLPISYDKILQG-IELAKKRVKSILKILKDAL 265
>gi|395845692|ref|XP_003795559.1| PREDICTED: exosome complex component RRP45 [Otolemur garnettii]
Length = 439
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 135/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A S+ + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALSHFRRPDVSVQGDEVTLYTHE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELIQKAL 269
>gi|388514143|gb|AFK45133.1| unknown [Medicago truncatula]
Length = 286
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 127/280 (45%), Gaps = 21/280 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ E +A +R D R R + G + A+GSA +IG+T ++A++K E+ PSL
Sbjct: 11 FIEGGIAHDLRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAELGKPSLM 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI---------SSSGMINLKE 137
PD+G VSI CS P A ++ LS+ + + I+
Sbjct: 71 QPDKGKVSIYID----CSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGAAIDRSS 126
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L +V GK W +Y+D + +DG L D + A SN IP V + G
Sbjct: 127 LVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPKVQIAAGA-------SS 179
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
+E E + +++ + GIP +T + + D T EEES M + V++ ++ +
Sbjct: 180 DEQPEVDVSDEDFMQFDTSGIPVIVTLTKVGKHYIVDATPEEESQMSSTVSISINRQGHI 239
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
+ K GGA L S + D +++ + ++L L+ I+
Sbjct: 240 CGVTKRGGAGLD-PSVILDMVSVAKHVSEQLINKLDSEIA 278
>gi|221057472|ref|XP_002261244.1| exosome complex exonuclease [Plasmodium knowlesi strain H]
gi|194247249|emb|CAQ40649.1| exosome complex exonuclease, putative [Plasmodium knowlesi strain
H]
Length = 514
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 136/275 (49%), Gaps = 24/275 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+F +L + +R D R+ +RN +I G+ IG T ++ I E++ P +
Sbjct: 10 FFWCNLKKKLRLDGRNFEDSRNISIYFFGEY---GNVEVSIGHTKVICKITSEIVKPFDK 66
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI-SSSGMINLKELSLVGGKA 145
P+EG + ++ + + V + K L + I SS ++N + L ++ K
Sbjct: 67 RPNEGIIKVNLDIDSFTN--VNDNSQISDECLEIKNLIERILKSSNLLNFESLCIIPHKK 124
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD-GKIVMLPEEQKEENSEKE 204
W + ++I ++ DG L+D+ LSA + + + V++D G I + EQ E N
Sbjct: 125 VWCLLVNIIVVENDGNLYDSCFLSAYSGLVHYRNNEVTVDSIGNIFI---EQGETNYTP- 180
Query: 205 PVNKEKRKLTLGGIPFSLTCILHKN---YILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
L++ P LT + N L DP+ +EE M + ++V L+ + +LVS+
Sbjct: 181 --------LSIHNTPI-LTTFAYFNCEDICLIDPSIQEEEFMSSKLSVALNKNGKLVSIL 231
Query: 262 KPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
KPGG+ ++Y + + I L ++RVK + +ILE+A+
Sbjct: 232 KPGGSPISY-EKILEAIELAKKRVKSILKILEDAL 265
>gi|255075435|ref|XP_002501392.1| predicted protein [Micromonas sp. RCC299]
gi|226516656|gb|ACO62650.1| predicted protein [Micromonas sp. RCC299]
Length = 291
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 137/274 (50%), Gaps = 20/274 (7%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E +R D R R + G DG ++G T +LA + ++ PS +EG +
Sbjct: 23 EELRVDGRGPFDTRPVSYRFG---PKDGMCEVQLGDTRVLAVVSAKLEPPSGARGNEGTI 79
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDI 153
+I+ P+ SP PGRP E A +A L I +G ++++ L ++ G+ W V D+
Sbjct: 80 TINVEFSPMASPNFEPGRPGEQAQELALVLERAIRETGAVDVESLCVLAGRRVWHVRCDV 139
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
+ LDA G + AA L+A AA + + P TVS D I + P + +EPV
Sbjct: 140 HVLDACGNIAGAASLAADAALLSFRRPEATVSPDTQLITVHPADV------REPV----- 188
Query: 212 KLTLGGIPFSLTCIL---HKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
L L +P ++T ++ADPT EE ++ + + VVL++ ++L ++ + GG V
Sbjct: 189 PLALHHLPVAITFGYFAEQDGLVIADPTVNEEMVIGSELVVVLNAHDELCAV-RYGGEVA 247
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
S + C+ + + K+L + L++A + E++
Sbjct: 248 VKPSEISRCVRIASRISKDLTKDLKKAHAAWEVE 281
>gi|168041870|ref|XP_001773413.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675289|gb|EDQ61786.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 287
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 123/268 (45%), Gaps = 21/268 (7%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
+ Y E +A+++R D R RN I+ G + A+GS+ K+G T ++ ++K E+ P
Sbjct: 9 VSYIEGGIAQNLRSDGRGRLDFRNIAITTGVIPQANGSSRCKVGGTDVMVSVKAELGNPP 68
Query: 85 LESPDEGCVSIDFHMPPICSPLVRP---GRPAEAAPVVAKQ------LSDTISSSGMINL 135
P G + I CSP P GR E + + L S I+L
Sbjct: 69 KGRPSHGGMQIKVE----CSPTANPEFEGRGGEELSLELTRGLERSFLGGPNGSGAAIDL 124
Query: 136 KELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEE 195
L +V GK W++ +D L +DG L DA ++ AA N +P K+ ++
Sbjct: 125 STLRIVDGKTCWVLCIDGLVLSSDGNLLDALSIAVKAALRNTGLP-------KVEVVAGG 177
Query: 196 QKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSN 255
++E+ E E ++E +L + P +T D T+EEES M + V+V ++
Sbjct: 178 AEDEDPEIEVDDEESSQLDVSNAPVIITLTKVGKSYFVDATAEEESHMRSAVSVAVNRKG 237
Query: 256 QLVSLYKPGGAVLAYTSAVQDCIALTRQ 283
+ + K GG L S + D I++ +Q
Sbjct: 238 VVCGVTKRGGEGL-EPSTIIDMISVAQQ 264
>gi|321475502|gb|EFX86465.1| hypothetical protein DAPPUDRAFT_222073 [Daphnia pulex]
Length = 290
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 123/246 (50%), Gaps = 15/246 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + + +R D R+ R + G V++A GSA ++ ++ +L +K+E+ +P +
Sbjct: 13 FIHHGVQDDLRCDGRTRLDYRPIILETGLVSNASGSARLRLANSDILVGVKVELASPLPD 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAE-AAPVVAKQLSDTISSSGMINLKELSLVG 142
P EG ++F + CS P GR E A + + L + +S INL ELS++
Sbjct: 73 KPQEG--RLEFFVD--CSANATPEFEGRGGEDLANEICRFLQRSYASGDTINLSELSVLT 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
G+ W++Y+DI L+ G L+DA L+ +A QIP++ K+ + +Q E
Sbjct: 129 GQQCWVLYVDILILECGGNLYDAVSLAVKSALYATQIPSI-----KVATMDGDQPELELS 183
Query: 203 KEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
+P + ++L IP +T + N+ L DPT EEE + + V + + ++ ++ K
Sbjct: 184 DDPY--DTKRLNTENIPCVVTLMKIGNHYLVDPTPEEECCSSSGIVVAVSGNKKITAVRK 241
Query: 263 PGGAVL 268
G L
Sbjct: 242 IGSGSL 247
>gi|21536581|gb|AAM60913.1| nucleolar autoantigen-like protein [Arabidopsis thaliana]
Length = 307
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 136/276 (49%), Gaps = 20/276 (7%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ E L +R D R L R TI G GS+ ++G T ++A + +++ P
Sbjct: 17 KFVESALQSELRVDGRGLYDYRKLTIKFG---KEYGSSQVQLGQTHVMAFVTAQLVQPYK 73
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P EG SI P+ P PG P E+A + + + + S ++ + L ++ GK
Sbjct: 74 DRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRAVDTESLCVLAGKL 133
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDGK-IVMLPEEQKEENSE 202
W V +D++ LD G L DAA ++A+AA + P TV D+ + +++ P E E
Sbjct: 134 VWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVIIHPPE------E 187
Query: 203 KEPVNKEKRKLTLGGIPFSLTC-ILHKNYILA-DPTSEEESIMETLVTVVLDSSNQLVSL 260
+EP+ L + +P + T +K IL DPT EE++M +TV ++++ + ++
Sbjct: 188 REPL-----PLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDICAI 242
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
KPG + S + C+ L R +I+ +A+
Sbjct: 243 QKPGEEGVN-QSVILHCLRLASSRASATTKIIRDAV 277
>gi|18399822|ref|NP_566441.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|79313209|ref|NP_001030684.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|334185300|ref|NP_001189874.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|15795131|dbj|BAB02509.1| nucleolar autoantigen-like protein [Arabidopsis thaliana]
gi|27765042|gb|AAO23642.1| At3g12990 [Arabidopsis thaliana]
gi|110742714|dbj|BAE99268.1| hypothetical protein [Arabidopsis thaliana]
gi|332641750|gb|AEE75271.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|332641751|gb|AEE75272.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|332641752|gb|AEE75273.1| ribonuclease PH45A [Arabidopsis thaliana]
Length = 307
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 136/276 (49%), Gaps = 20/276 (7%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ E L +R D R L R TI G GS+ ++G T ++A + +++ P
Sbjct: 17 KFVESALQSELRVDGRGLYDYRKLTIKFG---KEYGSSQVQLGQTHVMAFVTAQLVQPYK 73
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P EG SI P+ P PG P E+A + + + + S ++ + L ++ GK
Sbjct: 74 DRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRAVDTESLCVLAGKL 133
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDGK-IVMLPEEQKEENSE 202
W V +D++ LD G L DAA ++A+AA + P TV D+ + +++ P E E
Sbjct: 134 VWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVIIHPPE------E 187
Query: 203 KEPVNKEKRKLTLGGIPFSLTC-ILHKNYILA-DPTSEEESIMETLVTVVLDSSNQLVSL 260
+EP+ L + +P + T +K IL DPT EE++M +TV ++++ + ++
Sbjct: 188 REPL-----PLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDICAI 242
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
KPG + S + C+ L R +I+ +A+
Sbjct: 243 QKPGEEGVN-QSVILHCLRLASSRASATTKIIRDAV 277
>gi|156101467|ref|XP_001616427.1| exosome complex exonuclease [Plasmodium vivax Sal-1]
gi|148805301|gb|EDL46700.1| exosome complex exonuclease, putative [Plasmodium vivax]
Length = 518
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 137/275 (49%), Gaps = 22/275 (8%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
+F +L + +R D R +RN +I G+ IG T ++ I E++ P
Sbjct: 9 NFFWCNLKKKLRLDGRKFEDSRNISIYF---LGEHGNVEVSIGHTKVICKITSEIVKPFD 65
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P+EG + ++ + + + + ++ + + + SS ++NL+ L ++ K
Sbjct: 66 KRPNEGIIKVNLDIDSFTN-VNDNSQISDECLEIKNLIERILKSSNLLNLESLCIIPHKK 124
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD-DGKIVMLPEEQKEENSEKE 204
W + ++I ++ DG L+D+ LSA + + + V++D G I++ E+ E N
Sbjct: 125 VWCLLVNIIVIENDGNLYDSCYLSAYSGLVHYRNNEVTVDSSGNIII---EEGETNY--- 178
Query: 205 PVNKEKRKLTLGGIPFSLTCILHKN---YILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
L++ P LT + N L DP+ EE M + ++V L+ + +LVS+
Sbjct: 179 ------TPLSIHNTPI-LTTFAYFNCEDICLIDPSIHEEEFMSSKLSVALNKNGKLVSIL 231
Query: 262 KPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
KPGG+ ++Y + + I L ++RVK + +ILE+A+
Sbjct: 232 KPGGSPISY-EKILEAIELAKKRVKSILKILEDAL 265
>gi|40217447|emb|CAE46380.1| 3'-5' exoribonuclease [uncultured archaeon]
gi|268323830|emb|CBH37418.1| 3'-5' exoribonuclase [uncultured archaeon]
Length = 260
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 21/228 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R R+ + + A+GS +IG T +L +K+E P ++P++G + +
Sbjct: 23 RADGRGFLDFRDIIVERDLIKKAEGSTRVQIGDTVVLVGVKVEPGEPFPDTPNKGILMTN 82
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ SP G P E + +A+ + I S I+L++L + G+ WM+++DI+ L
Sbjct: 83 AELVPLASPEFESGPPGENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMIFIDIHTL 142
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG L DAA L A+ + N+ IP EQ E L +
Sbjct: 143 DNDGNLVDAAALGAIMSLLNVAIPY-------------EQYGLTGED--------TLQIR 181
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
P ++T + + +L DP EES + +TV+ ++ + L K G
Sbjct: 182 DTPVAVTVVEIRGNLLVDPNVYEESAATSKLTVISNADGSISGLQKSG 229
>gi|302757249|ref|XP_002962048.1| hypothetical protein SELMODRAFT_77552 [Selaginella moellendorffii]
gi|302775248|ref|XP_002971041.1| hypothetical protein SELMODRAFT_94605 [Selaginella moellendorffii]
gi|300161023|gb|EFJ27639.1| hypothetical protein SELMODRAFT_94605 [Selaginella moellendorffii]
gi|300170707|gb|EFJ37308.1| hypothetical protein SELMODRAFT_77552 [Selaginella moellendorffii]
Length = 377
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 138/280 (49%), Gaps = 18/280 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ E L + +R D R+ +R + I+ A DG+ + G T +LA + ++ TP +
Sbjct: 14 FVESALRQELRVDGRAPFDSRRSLINF---AREDGAVEVQQGETRVLAVVSAQLGTPYPD 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P+EG + I+ P+ P PGRP E A + + + + S ++ + L ++ GKA
Sbjct: 71 RPNEGSLVINTEFSPMADPSFEPGRPGELAVELGRVIDRGLRESRAVDTESLCVLAGKAV 130
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD--DGKIVMLPEEQKEENSEKE 204
W + +DI+ LD G L D A L+A+A + + P S+ DG+ + +
Sbjct: 131 WFLRIDIHILDNGGNLIDVANLAALAGLLSFRRPECSIGGADGQDITI----------HP 180
Query: 205 PVNKEKRKLTLGGIPFSLT--CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
P +E LTL +P ++T + ++ DP+ +EE++M +TV +++ ++ ++ K
Sbjct: 181 PEVREPLPLTLHHLPIAVTFGFLADGELVVLDPSLKEEAVMGGRLTVTVNAHGEVCAIQK 240
Query: 263 PGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
GG V + + C+ + + E +L++ EI+
Sbjct: 241 -GGGVAVRMNEILRCMRIAASKAAETAALLKKGAESHEIE 279
>gi|171685834|ref|XP_001907858.1| hypothetical protein [Podospora anserina S mat+]
gi|170942878|emb|CAP68531.1| unnamed protein product [Podospora anserina S mat+]
Length = 297
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 125/270 (46%), Gaps = 20/270 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +S+R D R L + R ++ G G A +G T +LA E+ P + P +G
Sbjct: 19 LHDSVRLDGRELEQYRPLELTFG---DQYGVADVTLGKTRVLAKASAELTVPYADRPLDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + P+ SP RP E ++++ L T+ SG ++ + L LV G+ W + +
Sbjct: 76 IFNIATELSPMTSPAFEVNRPTETEVLISRLLEKTVRRSGALDTESLCLVAGQKCWSIRV 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQKEENSEKEPVNKEK 210
D++ L DG L DAA + VAA + + P S++ G + V P +E+EPV
Sbjct: 136 DVHVLSHDGNLIDAACFAVVAALRHFRKPDTSMEGGVLTVYTP-------AEREPV---- 184
Query: 211 RKLTLGGIPFSLTCIL---HKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAV 267
L+ PF +T + + D T EE + T+ L+ ++ + K GG
Sbjct: 185 -PLSWLHSPFCVTWSFFGEEGDVAVLDATWMEEQVRSGSCTISLNKHGEICQIAKLGGVP 243
Query: 268 LAYTSAVQDCIALTRQRVKELHQILEEAIS 297
+ S +Q C + + K++ L+ ++
Sbjct: 244 VEAVSLLQ-CTNVALVKAKDMSSKLDRWLA 272
>gi|356559534|ref|XP_003548054.1| PREDICTED: exosome complex component RRP42-like [Glycine max]
Length = 286
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 130/276 (47%), Gaps = 21/276 (7%)
Query: 22 LFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVM 81
L + + +A+ +R D R R ++ G + +GSA ++G+T ++A++K E+
Sbjct: 6 LGETHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQTNGSARVRMGATDVIASVKAELG 65
Query: 82 TPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI--------SSSGM- 132
PSL PD+G VSI CS P +A +LS+ + S +G
Sbjct: 66 KPSLLQPDKGKVSIYVD----CSSTAEPAFEGRGGDELAAELSNALQRCLLGGKSGAGAG 121
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVML 192
I+L L +V GK W +Y+D + +DG L DA + AA SN IP V + G
Sbjct: 122 IDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVQVAAGT---- 177
Query: 193 PEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLD 252
+E+ E + ++E + +P +T + + D TSEEES M + V++ ++
Sbjct: 178 ---SNDEHPEVDVSDEEFLQFDTSRVPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVN 234
Query: 253 SSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKEL 288
+ + K GG L S + D I++ + ++L
Sbjct: 235 RQGHICGITKRGGVGLD-PSIILDMISVAKHVSEQL 269
>gi|261190048|ref|XP_002621434.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
gi|239591262|gb|EEQ73843.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
gi|239606325|gb|EEQ83312.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Ajellomyces dermatitidis ER-3]
gi|327353102|gb|EGE81959.1| exosome complex exonuclease RRP45 [Ajellomyces dermatitidis ATCC
18188]
Length = 293
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 137/287 (47%), Gaps = 25/287 (8%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
+ E ++ A R F L L +++R D R+L + R T+S G G ++G
Sbjct: 1 MPKEADISANERTFILEA----LHKNVRLDGRALDQLRPLTVSFG---DEYGHVKLQLGK 53
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T+++ I EV P E ++G ++ + + SP GR +E + + L I
Sbjct: 54 TSVVVRISAEVTKPRPERENDGIFTVSVELNDMASPAYETGRQSELETQLVRTLDRIIRR 113
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189
S ++ + L + GK W V D++ +D+DG L D+ L+ + + ++P + DG++
Sbjct: 114 SNALDTESLCIAAGKNCWHVRADVHVVDSDGGLVDSCCLAIMTGLLHFRLPEAVVRDGRV 173
Query: 190 -VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETL 246
V PEE+ P+N L +P S T ++ I+ D TS+EE++ E
Sbjct: 174 TVYRPEERV-----PSPLN-------LTKLPLSTTFNMYDEGRIIVLDATSKEEAVSEGS 221
Query: 247 VTVVLDSSNQLVSLY-KPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
+ + LD + + +SLY KP G S + C + ++KE+++ +
Sbjct: 222 LIIALDKTGE-ISLYTKPDGTPGDPLSMIS-CSTVALAKIKEMNKFI 266
>gi|52550027|gb|AAU83876.1| 3'-5' exoribonuclease [uncultured archaeon GZfos34H10]
Length = 260
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 21/228 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R R+ + + ADGS +IG T +L +K+E P ++P++G + +
Sbjct: 23 RADGRGFLDFRDIIVERDLIKKADGSTRVQIGDTVVLVGVKVEPGEPFSDTPNKGILMTN 82
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ SP G P E + +A+ + I S I+L++L + G+ WM+++DI+ L
Sbjct: 83 AELVPLASPEFESGPPNENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMLFIDIHTL 142
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG L DAA L A+ + N+ IP EQ E L +
Sbjct: 143 DNDGNLVDAAALGAITSLLNVAIPY-------------EQYGLTGED--------TLQIR 181
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
P ++T + +L DP EES + +TV+ ++ + L K G
Sbjct: 182 DTPVAVTVVEIGGNLLVDPNVYEESAATSKLTVISNADGSISGLQKSG 229
>gi|322799219|gb|EFZ20634.1| hypothetical protein SINV_00940 [Solenopsis invicta]
Length = 384
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 114/236 (48%), Gaps = 15/236 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ R + E R D R L R+ I G S+ G + +G T ++ + ++ P
Sbjct: 13 FINRCIEEETRLDGRKLLEPRSVKIYFG---SSWGCCMVSLGHTRVVTQVSCDIQQPKAS 69
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P+EG + I+ + P+ + GRP+EAA ++++QL S ++L+ L +V K
Sbjct: 70 RPNEGTIRINVELAPLAAQHFESGRPSEAAILISRQLEKCFKDSKCVDLESLCIVADKKV 129
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W + +D+ ++ DG L D A ++ +AA + P V+ ++++ P SEK+ +
Sbjct: 130 WNLRIDVNVINHDGNLIDCASVATLAALIHFHRPDVTSTGEEVIIHPA------SEKDFL 183
Query: 207 NKEKRKLTLGGIPFSLTCI-LHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
LTL P ++ I + DPT EE + +T+ ++S +L SL+
Sbjct: 184 -----PLTLFHYPICISFITFQSGNTVMDPTYLEERVGVAELTLGMNSYRELCSLH 234
>gi|449477436|ref|XP_004155022.1| PREDICTED: exosome complex component RRP42-like [Cucumis sativus]
Length = 286
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 131/285 (45%), Gaps = 21/285 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + +A+ +R D R R +I ++ A+GSA ++G T ++A +K E+ P+
Sbjct: 11 FIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAELGRPNPM 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI--------SSSGM-INLKE 137
PD+G VSI CSP P ++ +LS + S SG I+L
Sbjct: 71 QPDKGKVSISVD----CSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGIDLSS 126
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L +V GK W +Y++ + ++G L DA + AA SN IP K+ + E
Sbjct: 127 LIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIP-------KVHVAAEALD 179
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
E E + ++E + G+P +T + + D T EEES M + V++ +D +
Sbjct: 180 NEQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHI 239
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
L K GG V S + D I++ + +EL L+ I E D
Sbjct: 240 CGLTKRGG-VGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEAD 283
>gi|322790229|gb|EFZ15228.1| hypothetical protein SINV_06363 [Solenopsis invicta]
Length = 139
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 80/136 (58%)
Query: 39 DARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFH 98
D R R +I++ ++ AD SA+ K+G TT + IK E+ TP ++PD G + +
Sbjct: 2 DGRKFLSFRPISINVSSIVQADSSAIFKLGDTTAVCGIKAELATPKADTPDHGYIVPNVE 61
Query: 99 MPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDA 158
+ P+CS RPG P+E A V++K + +S+S ++LK+L + K W++Y DI CL+
Sbjct: 62 LSPLCSSKFRPGPPSEQAQVLSKLIDIILSNSVALDLKDLCICRNKLVWVLYCDILCLNY 121
Query: 159 DGALFDAALLSAVAAF 174
+G++ DA + AA
Sbjct: 122 NGSVIDACTGAMFAAL 137
>gi|217073628|gb|ACJ85174.1| unknown [Medicago truncatula]
Length = 286
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 126/280 (45%), Gaps = 21/280 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ E +A +R D R R + G + A+GSA +IG+T ++A++K E+ PSL
Sbjct: 11 FIEGGIAHDLRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAELGKPSLM 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI---------SSSGMINLKE 137
PD+G VSI CS P A ++ LS+ + + I+
Sbjct: 71 QPDKGKVSIYID----CSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGAAIDRSS 126
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L +V GK W +Y+D + +DG L D + A SN IP V + G
Sbjct: 127 LVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPKVQIAAGA-------SS 179
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
+E E + +++ + GIP +T + + D T EEES M V++ ++ +
Sbjct: 180 DEQPEVDVSDEDFMQFDTSGIPVIVTLTKVGKHYIVDATPEEESQMSFTVSISINRQGHI 239
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
+ K GGA L S + D +++ + ++L L+ I+
Sbjct: 240 CGVTKRGGAGLD-PSVILDMVSVAKHVSEQLINKLDSEIA 278
>gi|336258954|ref|XP_003344283.1| hypothetical protein SMAC_06484 [Sordaria macrospora k-hell]
gi|380091844|emb|CCC10573.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 297
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 123/266 (46%), Gaps = 24/266 (9%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E IR D R + R ++ G G A +G T +LA EV P + P +G
Sbjct: 22 EQIRLDGREFDQYRPLELTFG---DEYGVANVSLGKTKILAKASAEVTVPFADRPLDGIF 78
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDI 153
+I + P+ +P RP E ++++ L T+ SG ++ + L LV G+ W V +D+
Sbjct: 79 TIATELSPMAAPHFEVNRPTETEVLLSRLLEKTVRRSGALDTESLCLVAGQKCWSVRVDV 138
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQKEENSEKEPVNKEKRK 212
+ L DG L DAA + VAA + + P S+++G + V P +E+EPV
Sbjct: 139 HVLSHDGNLTDAACFAVVAALRHFRKPDTSMENGVLTVYTP-------AEREPV------ 185
Query: 213 LTLGGI--PFSLTCILHKN---YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAV 267
LG + PF +T + L D EE + +T+ L+ ++ + K GG
Sbjct: 186 -PLGWLHSPFCVTWSFFGDEGETALLDADWMEEQVRVASLTISLNRHGEICQIAKLGGVP 244
Query: 268 LAYTSAVQDCIALTRQRVKELHQILE 293
+ + +Q C ++ +VK+ L+
Sbjct: 245 VEAVALLQ-CTSVALTKVKDFSTFLD 269
>gi|281202081|gb|EFA76286.1| hypothetical protein PPL_10049 [Polysphondylium pallidum PN500]
Length = 1016
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 133/266 (50%), Gaps = 16/266 (6%)
Query: 4 PNASEDLSSEM-EVDAFRRLFPLR-YFERHLAE-SIRPDARSLSRARNTTISMGAVASAD 60
P +DL M +++ +++ P YF + E +R D RS R+ + +G +A A
Sbjct: 740 PLKQKDLEGMMNQINIIQKISPSEIYFIKQGVECGVRSDGRSRLDYRHFELDVGEIAHAC 799
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPV-V 119
GSA + +T +L IK ++ P+ + P+ G ++ P SP G+ AE + +
Sbjct: 800 GSARILLSNTHVLVGIKADIGAPTTDKPNSGVLNYSVECCPSASPEFE-GKGAEQLNIEL 858
Query: 120 AKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQI 179
AKQL + +S ++L+ L +V G+ W +++D LD+DG LFDA + AA N ++
Sbjct: 859 AKQLERMLENS--LDLESLVIVPGRYCWNLHIDATVLDSDGNLFDALSIVTRAALFNTRL 916
Query: 180 PTVSLDDGKIVMLPEEQKE-ENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSE 238
PT+ K+V EQ E E SE + L++ +P +T L D T E
Sbjct: 917 PTI-----KVVQGEHEQIEFEVSEDSDT---YQSLSIENVPICVTLTKVGTQFLIDSTLE 968
Query: 239 EESIMETLVTVVLDSSNQLVSLYKPG 264
EE ME +T+ ++ + + S+ K G
Sbjct: 969 EELCMEARLTIGINKKSNICSIQKGG 994
>gi|73669985|ref|YP_306000.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina barkeri
str. Fusaro]
gi|72397147|gb|AAZ71420.1| ribosomal RNA-processing protein RRP42 [Methanosarcina barkeri str.
Fusaro]
Length = 260
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 132/271 (48%), Gaps = 24/271 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D R R+ + + A+GSA +G T +L +K++ TP +
Sbjct: 12 YIYNLMIKGKRQDGRGFKDFRDIKLETNVIPKAEGSAKVTLGDTQVLVGVKLQPGTPFPD 71
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
S DEG + + + PI SP PG P E A +A+ + I SG I++K+L + G++
Sbjct: 72 SQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRGIRESGAIDIKKLCISVGESV 131
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W+ Y+D++ L+ DG + DA+ L+A+AA ++P EQ ++
Sbjct: 132 WIAYIDVHVLNDDGNIIDASSLAAIAALMT-------------TIVPNEQHGIGADVPLA 178
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
KE +P +T + ++ DP+ +E ++ ET +TVV S + + K G
Sbjct: 179 MKE--------MPVGVTLAKIGSKLMVDPSLDEGAVCETKLTVVSSSDGSVAGMQKMG-- 228
Query: 267 VLAYTSA-VQDCIALTRQRVKELHQILEEAI 296
+ +T A V + I + ++ E+ ++ EA+
Sbjct: 229 TVPFTEAEVLEAIDMACEKAAEIRKLYLEAL 259
>gi|18398046|ref|NP_566318.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
gi|30680427|ref|NP_850537.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
gi|11762184|gb|AAG40370.1|AF325018_1 AT3g07750 [Arabidopsis thaliana]
gi|26453010|dbj|BAC43581.1| putative 3' exoribonuclease [Arabidopsis thaliana]
gi|56744222|gb|AAW28551.1| At3g07750 [Arabidopsis thaliana]
gi|332641077|gb|AEE74598.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
gi|332641078|gb|AEE74599.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
Length = 286
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 132/284 (46%), Gaps = 21/284 (7%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
+ + +A+ +R D R R + G + A+GSA +IG T ++A++K E+ PS
Sbjct: 9 HFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSS 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRP---GRPAEA-----APVVAKQLSDTISSSGM-INLK 136
PD+G V++ CSP P GR E A + + L S +G INL
Sbjct: 69 LQPDKGKVAVFID----CSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLS 124
Query: 137 ELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQ 196
L + GK W +Y+D + +DG L DA + AA +N IP V++ E
Sbjct: 125 SLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVS-------AEVA 177
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
+E E + ++E + +P +T + + D T+EEES M + V++ ++ +
Sbjct: 178 DDEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGH 237
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
+ L K G+ L S + D I++ + + L L+ IS E
Sbjct: 238 ICGLTKRSGSGLD-PSVILDMISVAKHVTETLMSKLDSEISAAE 280
>gi|13541139|ref|NP_110827.1| exosome complex RNA-binding protein Rrp42 [Thermoplasma volcanium
GSS1]
gi|29336898|sp|Q97BZ4.1|ECX2_THEVO RecName: Full=Probable exosome complex exonuclease 2
gi|14324526|dbj|BAB59453.1| nucleotidyltransferase [Thermoplasma volcanium GSS1]
Length = 260
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 110/235 (46%), Gaps = 24/235 (10%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R R TI V A+GSA +G T ++A +K+E P ++PD+G ++ +
Sbjct: 26 RIDGRLPDEFREITIIENYVPRANGSAYVALGKTRVVAGVKIEAGEPFPDTPDQGVLTTN 85
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ PI P G P + A V++ + I S MI+ +L + GK W+V+LDI L
Sbjct: 86 VELLPIAFPSFEAGPPNDLAIEVSRVVDRGIRESKMISPDKLVIEQGKKVWIVFLDINVL 145
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG L DA ++AV+A N +P S + G E KL +
Sbjct: 146 DYDGNLIDACTIAAVSALRNAIVPA-SREGG---------------------EDFKLPVV 183
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
P S+T + + ++ DP+ EE+ I +TV + ++ K G + +T
Sbjct: 184 NTPISVTMVKIGDTLVCDPSLEEDQICGGRITVTTTEDGHIRAMQK--GEIGVFT 236
>gi|52550471|gb|AAU84320.1| 3'-5' exoribonuclease [uncultured archaeon GZfos9D1]
Length = 257
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 115/232 (49%), Gaps = 21/232 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R R ++ + A+GSA KIG T +L +K+E+ TP ++PD+G + +
Sbjct: 23 REDGRGFREYREISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTPFPDTPDKGVIITN 82
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ SP G P E + +A+ + I S I+L +L + G+ WMV++DI+ L
Sbjct: 83 AELVPLASPKFESGPPNENSIQLARVVDRGIRGSETIDLDKLCIEKGEKVWMVFIDIHVL 142
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D +G L DAA L A+A+ NL+IP +E+ + E L +
Sbjct: 143 DDNGNLADAAALGAIASLLNLRIP--------------------NERYGLTGEN-TLPMR 181
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
P ++T + + IL DP+ +E + + VTV+ ++ L + K G L
Sbjct: 182 DTPVAVTTVEIEGNILVDPSFDEGNAAASSVTVISNADGTLSGMQKSGSGGL 233
>gi|118576718|ref|YP_876461.1| RNase PH-related exoribonuclease [Cenarchaeum symbiosum A]
gi|118195239|gb|ABK78157.1| RNase PH-related exoribonuclease [Cenarchaeum symbiosum A]
Length = 270
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 16/262 (6%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L R TI A+ A+GSA +G T ++ +K++ P + D G
Sbjct: 24 RIDGRRLDEPRKLTIETNAIPKAEGSARVHLGRTDVVTGVKVQPDRPFPDVGDRGIFICT 83
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ P V G P+ A +A+ + I SGM++L +L L+ K+ ++ D +
Sbjct: 84 AEILPLAHPDVETGPPSPAVIELARVVDRGIRESGMVDLSKLVLLKDKSVIGIFADSSVI 143
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG LFDA +A AA ++P + D V + E PV
Sbjct: 144 DVDGNLFDACSYAATAAILTAKLPKWEIQDEAPVRI------EGETPVPVTT-------- 189
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQD 276
IP S+T +IL DP +E ++M+ +T+ +S + +L K G + + V+
Sbjct: 190 -IPVSVTMAKINGHILVDPNQDEWAVMDARITITTNSDGNICALQKGGNSGFTHAELVK- 247
Query: 277 CIALTRQRVKELHQILEEAISG 298
C ++ + ++ +I++ A G
Sbjct: 248 CGEISVRVGADIREIIKRAGGG 269
>gi|424814254|ref|ZP_18239432.1| RNase PH-related exoribonuclease [Candidatus Nanosalina sp.
J07AB43]
gi|339757870|gb|EGQ43127.1| RNase PH-related exoribonuclease [Candidatus Nanosalina sp.
J07AB43]
Length = 262
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 130/274 (47%), Gaps = 21/274 (7%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAV-ASADGSALAKIGSTTMLAAIKMEVMTPS 84
R ++ E +R D R+L R+ I + +++GSA+ IG T +L I ++V P
Sbjct: 6 RDIKQKAPEGVRHDGRNLEEYRDIEIETDYINETSNGSAMVSIGDTKVLVGISIDVEEPY 65
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGK 144
+ P+ G + + + P+ G P E +A+ + I S I+L+EL + G+
Sbjct: 66 SDRPESGTIVTNAELAPMADRDFESGPPREPGVELARVVDRGIRESEAIDLEELCIEPGE 125
Query: 145 AAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKE 204
+ V++DI+ L+ DG L D + L+A+AA + +P S +E+
Sbjct: 126 KVYTVFIDIHVLNNDGNLIDCSSLAAMAALKSGHLPAYS-----------------TEER 168
Query: 205 PVNKEK--RKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
+N+++ + + L P + T ++ D T EE+ E +TV +D Q+V++ K
Sbjct: 169 SLNRDQKWKDIELTTEPVTATVCKINGEMVFDTTREEQEAQEARLTVSIDQDGQVVAMQK 228
Query: 263 PGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG + + + + + +E ++++++
Sbjct: 229 -GGTNSFSSDEISQAMDKVKDKTQEFRSLIDKSV 261
>gi|351710102|gb|EHB13021.1| Exosome complex exonuclease RRP45 [Heterocephalus glaber]
Length = 364
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 128/273 (46%), Gaps = 18/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ + E + D R RN IS G + G + ++G T +L + E++ P L
Sbjct: 12 RFLLCAIEEKKQLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVAPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + + + + L V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNLKCTDTESLCAVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +DI+ L+ DG + DAA + A+ A + + P VS+ + PEE +P
Sbjct: 129 VWQIRVDIHLLNHDGNITDAASIDAIVASCHFRRPDVSVQGEVTLYTPEEH-------DP 181
Query: 206 VNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P ++ + Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 182 V-----ALSIHHMPICVSFAFFQQGTYLLVDPNEREECVMDGLLVIAMNKHREICTIQYS 236
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C +T +V E+ +++++ +
Sbjct: 237 GGIMLLKDQVLR-CSKITGVKVAEITELIQKTL 268
>gi|395545185|ref|XP_003774485.1| PREDICTED: exosome complex component RRP45 isoform 2 [Sarcophilus
harrisii]
Length = 453
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 136/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ +I + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEITLYALE------ERDP 182
Query: 206 VNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P ++ + Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICISFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLQDQVLR-CSKIAGVKVAEITELIQKAL 269
>gi|395545183|ref|XP_003774484.1| PREDICTED: exosome complex component RRP45 isoform 1 [Sarcophilus
harrisii]
Length = 439
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 136/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ +I + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEITLYALE------ERDP 182
Query: 206 VNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P ++ + Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICISFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLQDQVLR-CSKIAGVKVAEITELIQKAL 269
>gi|156551918|ref|XP_001607202.1| PREDICTED: exosome complex component RRP45-like [Nasonia
vitripennis]
Length = 412
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 127/263 (48%), Gaps = 18/263 (6%)
Query: 17 DAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAI 76
+ F + + + + R D R+L R I+ G + G + +G T A +
Sbjct: 3 ETFISICEKNFVNKAIQTDTRIDGRTLLEPRPLKINFG---TNWGCCVVSLGQTRAAAQV 59
Query: 77 KMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLK 136
++ P P+EG + ++ + P+ + GR +EAA ++ +QL ++ S ++L+
Sbjct: 60 SCDIQQPKASRPNEGMLHVNVELNPLAAQHFESGRQSEAAALINRQLEKSLKESRCVDLE 119
Query: 137 ELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQ 196
L +V K W + +D+ ++ DG L D A ++A+AA + P V+ ++++ P
Sbjct: 120 SLCIVADKKVWNIRVDVSIINHDGNLIDCASIAALAALMHFHRPDVTSTGEEVIIHP--- 176
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLTCILHKN-YILADPTSEEESIMETLVTVVLDSSN 255
+EK+P+ LTL P ++ I +N + DP+ EE + ++T+ +++
Sbjct: 177 ---FTEKDPL-----PLTLYHHPVCISFITFENGKTVVDPSYLEERVGAAILTLGINAYR 228
Query: 256 QLVSLYKPGGAVLAYTSAVQDCI 278
++ SLY + YTS V D I
Sbjct: 229 EVCSLY---FDYIEYTSLVADVI 248
>gi|326918964|ref|XP_003205754.1| PREDICTED: exosome complex exonuclease RRP45-like, partial
[Meleagris gallopavo]
Length = 403
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 119/238 (50%), Gaps = 14/238 (5%)
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVA 120
G + ++G T +L + E++ P EG + + + P+ +P PGR +E V
Sbjct: 7 GCCVVELGKTRVLGQVSCELVPPKPNRATEGILFCNLELSPMAAPGFEPGRQSELLVKVN 66
Query: 121 KQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP 180
+ + + +S I+ + L +V G+ W + +D++ L+ DG + DAA ++ + A + + P
Sbjct: 67 RLIERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAGIVALCHFRRP 126
Query: 181 TVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPF--SLTCILHKNYILADPTSE 238
VS+ ++ + E E++PV L++ +P S Y+L DP
Sbjct: 127 DVSVQGKEVTVYSPE------ERDPV-----PLSIHHMPICVSFAFFQQGTYLLVDPNER 175
Query: 239 EESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
EE +M+ L+ + ++ ++ ++ GG +L ++ C +T +V E+ +++++A+
Sbjct: 176 EERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVLR-CSKITAVKVAEITELIQKAL 232
>gi|307111365|gb|EFN59599.1| hypothetical protein CHLNCDRAFT_132993 [Chlorella variabilis]
Length = 292
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 136/285 (47%), Gaps = 19/285 (6%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
+ + +A + R D R R ++ +G +A A GSA ++G T ++ +K E+ +P
Sbjct: 11 VEWITTGVACNCRNDGRQREDFRPLSVKLGELAQATGSARVQLGETDVIVGVKAEIGSPD 70
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSS---------GMINL 135
L+ PD C ++F + CSP+ P +A +LS + S G ++L
Sbjct: 71 LDRPD--CGRLNFAVE--CSPVASPAFRGRGGDELAGELSRALERSMYPGPSGRGGGVDL 126
Query: 136 KELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEE 195
LS+V GK W++Y+D L+ G L DA ++A AA ++ +IP V + G+ P +
Sbjct: 127 SLLSIVSGKTCWVLYVDALLLNIGGNLHDAVSVAAKAALADAKIPKVEVQPGED---PTD 183
Query: 196 QKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSN 255
+ + + +P E +L +GG+P +T + + D T+EEE + V +D++
Sbjct: 184 EPDYEVDDDP--SEAMRLDVGGMPICVTVSQIGGHCVVDLTAEEELCSSAALQVAVDATG 241
Query: 256 QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
+ K + + A++ A R K LH L EA+ +
Sbjct: 242 NVCGTTKRRRGGIEASQALEMVEAAQRAAAK-LHAALNEALGAQQ 285
>gi|346319692|gb|EGX89293.1| 3' exoribonuclease [Cordyceps militaris CM01]
Length = 297
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 125/274 (45%), Gaps = 24/274 (8%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
LAE +R D R + R+ ++ G G A ++G T +LA + EV P + P +G
Sbjct: 19 LAEGLRLDNRKFEQYRSLNVTFG---DEYGIAEVQVGKTKVLAKVSAEVTVPFSDRPFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + P+ +P RP E V+++ L TI SG ++ + L LV + W +
Sbjct: 76 VFTIASELSPMVAPSFEVNRPTETEVVLSRLLEKTIRRSGALDTESLCLVAAQKCWSIRA 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQKEENSEKEPVNKEK 210
D++ L DG L DA+ L+ +AA + + P +++ G + V P +E+EPV
Sbjct: 136 DLHVLAHDGNLLDASCLAVIAALRHFRKPETTMEGGVLTVYTP-------AEREPV---- 184
Query: 211 RKLTLGGIPFSLTCILH-------KNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
L+ PF +T +L D T EE + + T ++ ++ + K
Sbjct: 185 -PLSWLHSPFCVTFSFFGEEGDGDDTTVLLDTTWLEEQLRTSSCTFSMNKHGEICQVSKL 243
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
GGA + V+ C + KE +L+ ++
Sbjct: 244 GGAAVDAPLFVK-CAQTALNKSKEFTDLLDRKLA 276
>gi|147779414|emb|CAN74356.1| hypothetical protein VITISV_000912 [Vitis vinifera]
Length = 476
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 141/283 (49%), Gaps = 25/283 (8%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMG------AVASADGSALAKIGSTTMLAAIKME 79
++ E+ L +R D R R +I G + + DGS+ ++G T ++ + +
Sbjct: 17 KFIEKALLSDLRIDGRRPFDFRRISIKFGRQVFIRTICAEDGSSEVQLGQTHVMGFVTGQ 76
Query: 80 VMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELS 139
++ P + P+EG +SI P+ P GRP EAA + + + + S ++++ L
Sbjct: 77 LIQPYRDRPNEGTLSIYTEFSPMADPSFEAGRPGEAAVELGRVIDRGLRESRAVDMESLC 136
Query: 140 LVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL--DDGK--IVMLPEE 195
++ GK W + +D++ +D G L DAA ++A+AA + P S +DG+ IV PE
Sbjct: 137 VLAGKLVWSIRIDLHIIDNGGNLIDAANIAALAALLTFRRPECSFGGEDGQELIVHPPE- 195
Query: 196 QKEENSEKEPVNKEKRKLTLGGIPFSLT--CILHKNYILADPTSEEESIMETLVTVVLDS 253
+EP+ L + +P ++T I ++N ++ DPT EE++M +T L++
Sbjct: 196 ------VREPL-----PLIVHHLPIAVTFAIIGNENIMVIDPTHSEEAVMGGRMTATLNT 244
Query: 254 SNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+ + ++ K GG + S + C+ + + ++ ++ A+
Sbjct: 245 NGDVCAIQKAGGEGI-IQSVIMQCLRIASVKAADITSKIKNAV 286
>gi|444721920|gb|ELW62627.1| Exosome complex component RRP45 [Tupaia chinensis]
Length = 438
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 134/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNVKISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELIQKAL 269
>gi|169621181|ref|XP_001804001.1| hypothetical protein SNOG_13798 [Phaeosphaeria nodorum SN15]
gi|160704198|gb|EAT78822.2| hypothetical protein SNOG_13798 [Phaeosphaeria nodorum SN15]
Length = 292
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 129/272 (47%), Gaps = 17/272 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ ++ L E IR D R+ R ++ G G A ++G T ++A I ++V TP E
Sbjct: 14 FIKQALQEQIRLDGRAFDAFRKVELTFG---EEYGVADVQLGKTRVVARISIDVTTPLPE 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+G I P+ SP GRP +A ++++ L I S ++ + L ++ G
Sbjct: 71 RKFDGVFQIVTEFSPMASPAFEIGRPTDAEVILSRILEKAIRRSNALDTESLCIIAGLKC 130
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
+ + D++ +D DG L DA+ ++ +AA + + P V ++ K +L E++P+
Sbjct: 131 FALRADVHVIDHDGGLIDASCIAVMAALQHFRRPDVLVEGEKATVLS------VRERDPI 184
Query: 207 NKEKRKLTLGGIPFSLTC--ILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
L++ P +T L D EE + + +T+ ++ ++ + K G
Sbjct: 185 -----PLSILHQPLCVTFSYFAEGELFLVDANLAEEQVRQGEITITMNKHGEICQIAKYG 239
Query: 265 GAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GA + + +Q C + Q+VKE+ + +++ +
Sbjct: 240 GATVNPLAMLQ-CTNVALQKVKEMSKFIQQKL 270
>gi|225460698|ref|XP_002270464.1| PREDICTED: exosome complex component rrp45-like [Vitis vinifera]
Length = 467
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 139/277 (50%), Gaps = 22/277 (7%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ E+ L +R D R R +I G DGS+ ++G T ++ + +++ P
Sbjct: 17 KFIEKALLSDLRIDGRRPFDFRRISIKFG---REDGSSEVQLGQTHVMGFVTGQLIQPYR 73
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P+EG +SI P+ P GRP EAA + + + + S ++++ L ++ GK
Sbjct: 74 DRPNEGTLSIYTEFSPMADPSFEAGRPGEAAVELGRVIDRGLRESRAVDMESLCVLAGKL 133
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL--DDGK--IVMLPEEQKEENS 201
W + +D++ +D G L DAA ++A+AA + P S +DG+ IV PE
Sbjct: 134 VWSIRIDLHIIDNGGNLIDAANIAALAALLTFRRPECSFGGEDGQELIVHPPE------- 186
Query: 202 EKEPVNKEKRKLTLGGIPFSLT--CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVS 259
+EP+ L + +P ++T I ++N ++ DPT EE++M +T L+++ + +
Sbjct: 187 VREPL-----PLIVHHLPIAVTFAIIGNENIMVIDPTHSEEAVMGGRMTATLNTNGDVCA 241
Query: 260 LYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+ K GG + S + C+ + + ++ ++ A+
Sbjct: 242 IQKAGGEGI-IQSVIMQCLRIASVKAADITSKIKNAV 277
>gi|344277527|ref|XP_003410552.1| PREDICTED: exosome complex component RRP45 [Loxodonta africana]
Length = 439
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 134/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELIQKAL 269
>gi|340728541|ref|XP_003402580.1| PREDICTED: exosome complex component RRP45-like [Bombus terrestris]
Length = 410
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 122/255 (47%), Gaps = 18/255 (7%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
+ + + + R D R L AR I AS GS + +G T ++A + ++ P
Sbjct: 12 NFINKSVEQGTRLDGRCLFEARPAKIYF---ASNWGSCMVLLGQTRVIAQVTCDIQQPKT 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
P+EG + I+ + P+ + GR +E + ++++QL S I+L+ L ++ K
Sbjct: 69 SRPNEGMLHINVELNPMAAQHFDGGRQSEISILISRQLEKCYQDSKCIDLESLCIIADKQ 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D+ ++ DG L D A ++ +AA S+ P V+ + I++ P SEK+P
Sbjct: 129 VWNLRVDVNVINHDGNLIDCASIATLAALSHFHRPDVTSNGEDIIVHP------FSEKDP 182
Query: 206 VNKEKRKLTLGGIPFSLTCI-LHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+ LTL P ++ I + DPT EE + +T+ ++S +L SL+
Sbjct: 183 L-----PLTLYHYPVCVSFITFESGSTVMDPTYLEERVGVAQLTLGINSYRELCSLH--- 234
Query: 265 GAVLAYTSAVQDCIA 279
L T V+D I+
Sbjct: 235 FNYLTKTMTVEDVIS 249
>gi|399218325|emb|CCF75212.1| unnamed protein product [Babesia microti strain RI]
Length = 278
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 126/271 (46%), Gaps = 18/271 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L IR D RS R+ I+ + G +L GST +L + EV+ P P EG
Sbjct: 14 LKTQIRLDGRSGLEYRDIKITFPGLI---GQSLVSFGSTIVLCTVNGEVIPPVDSRPTEG 70
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ + + PG+P E + + + SG I + L +V GK W + +
Sbjct: 71 FYHFHVEIGSLTTVGFEPGKPTEQEMFICSTIEHLLRDSGTIETESLCIVSGKYVWSIRV 130
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D+ L+ G DA LSAVA+ + + V +D KI +L +
Sbjct: 131 DMLVLEDAGNALDACALSAVASTMHFKRQQVKIDGEKIELLSLDHFTPG----------- 179
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
+L + IP +T + ++I+ DP++ EE + +TL++V ++ Q+ + K GG ++
Sbjct: 180 ELFIHHIPIFVTFAIVDDFIMIDPSTMEEMLADTLISVAVNQFEQICKIQKIGGKEISL- 238
Query: 272 SAVQDCIALTRQRVKELHQILEEAISGMEID 302
+ + +++Q+ ++ +L+++ ME+D
Sbjct: 239 EQLDRVLQVSKQQFNHVYGVLKKS---MELD 266
>gi|350402638|ref|XP_003486552.1| PREDICTED: exosome complex component RRP45-like [Bombus impatiens]
Length = 410
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 122/254 (48%), Gaps = 18/254 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + + + R D R L AR I AS GS + +G T ++A + ++ P
Sbjct: 13 FVNKSVEQGTRLDGRCLFEARPAKIYF---ASNWGSCMVLLGQTRVIAQVTCDIQQPKTS 69
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P+EG + I+ + P+ + GR +E + ++++QL S I+L+ L ++ K
Sbjct: 70 RPNEGMLHINVELNPMAAQHFDGGRQSEISVLISRQLEKCYQDSKCIDLESLCIIADKQV 129
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W + +D+ ++ DG L D A ++ +AA S+ P V+ + I++ P SEK+P+
Sbjct: 130 WNLRVDVNVINHDGNLIDCASIATLAALSHFHRPDVTSNGEDIIVHP------FSEKDPL 183
Query: 207 NKEKRKLTLGGIPFSLTCI-LHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
LTL P ++ I + DPT EE + +T+ ++S +L SL+
Sbjct: 184 -----PLTLYHYPVCVSFITFESGSTVMDPTYLEERVGVAQLTLGINSYRELCSLH---F 235
Query: 266 AVLAYTSAVQDCIA 279
L T V+D I+
Sbjct: 236 NYLTKTMTVEDVIS 249
>gi|307180205|gb|EFN68238.1| Exosome complex exonuclease RRP45 [Camponotus floridanus]
Length = 387
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 124/265 (46%), Gaps = 23/265 (8%)
Query: 21 RLFPLRYFERHLA-----ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAA 75
R PL ER+ E R D R L + R I G S G + +G T +A
Sbjct: 2 REVPLTNCERNFVNKCIEEETRLDGRRLLQPRPVKIYFG---SKWGCCMVSLGHTKAIAQ 58
Query: 76 IKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINL 135
+ ++ P P+EG + I+ + P+ + GR +EAA ++++QL S ++L
Sbjct: 59 VSCDIRQPKTFRPNEGTIYINVELAPLAAQHFESGRQSEAAILISRQLEKCFKDSKCVDL 118
Query: 136 KELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEE 195
+ L +V K W + +DI ++ DG L D A ++ +AA + P V+ +I++ P
Sbjct: 119 ESLCIVADKKVWSLRIDINIINHDGNLIDCASIAVLAALMHFHRPDVTSTGEEIIIHPA- 177
Query: 196 QKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKN-YILADPTSEEESIMETLVTVVLDSS 254
SEK+ + LTL P ++ I +N + DPT EE + +T+ ++S
Sbjct: 178 -----SEKDFL-----PLTLFHYPVCVSFITFENGNTIMDPTYIEERVGVAELTLGMNSY 227
Query: 255 NQLVSLYKPGGAVLAYTSAVQDCIA 279
+L SL+ L T V+D I+
Sbjct: 228 RELCSLH---FDYLTKTMTVEDVIS 249
>gi|431899671|gb|ELK07625.1| Exosome complex exonuclease RRP45 [Pteropus alecto]
Length = 440
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 134/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELIQKAL 269
>gi|407917787|gb|EKG11090.1| Exoribonuclease phosphorolytic domain 1 [Macrophomina phaseolina
MS6]
Length = 292
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 16/236 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E++R D R+ R+ ++ G + G A ++G T +L I +V P + +G
Sbjct: 19 LGENVRLDGRAFDTFRDLELTFG---NEYGVADVRLGKTRVLVRISSDVTAPFADRKFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I P+ SP GR EA ++++ L I SG ++ + L +V G + V
Sbjct: 76 IFNISTEFSPMASPAFEVGRQTEAEVILSRILEKAIRRSGALDTESLCIVAGSKCFSVRA 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D+ LD DG L DA+ ++ +AA + + P ++++ K+ + E+EPV
Sbjct: 136 DVNILDHDGNLIDASCIAIIAALQHFRRPDIAVEGEKVTVFSPR------EREPV----- 184
Query: 212 KLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
L++ P +T + N IL D T+ EE + E V + ++ ++ + K GG
Sbjct: 185 PLSMLHHPLCVTFSYYNNGEIILVDATAAEEQVREGEVIITMNKFGEICQIAKYGG 240
>gi|355686813|gb|AER98195.1| exosome component 9 [Mustela putorius furo]
Length = 394
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 134/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVLEITELIQKAL 269
>gi|225559371|gb|EEH07654.1| exosome complex exonuclease RRP45 [Ajellomyces capsulatus G186AR]
Length = 293
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 122/256 (47%), Gaps = 22/256 (8%)
Query: 13 EMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTM 72
E ++ A R F L L +++R D+R+L + R T+S G G ++G T++
Sbjct: 4 EADISANERAFILEA----LHKNVRLDSRALDQLRPLTVSFG---DEYGHVKLQLGKTSV 56
Query: 73 LAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGM 132
+ I EV P E ++G ++ + + SP GR +E + + L I S
Sbjct: 57 VVRISAEVTKPRSERENDGIFTVSVELNDMASPAYETGRQSELESQLVRTLDRIIRRSNA 116
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VM 191
++ + L + GK W V D++ +D+DG L D+ L+ + + ++P + +G++ V
Sbjct: 117 LDTESLCIAAGKNCWHVRADVHIVDSDGGLVDSCCLAIMTGLLHFRLPEAVVREGRVTVY 176
Query: 192 LPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTV 249
PEE+ P+N L +P S T ++ I+ D TS+EE++ E + +
Sbjct: 177 RPEERV-----PSPLN-------LTKLPLSTTFNMYDEGRIIVLDATSKEEAVSEGSLII 224
Query: 250 VLDSSNQLVSLYKPGG 265
LD + ++ KP G
Sbjct: 225 ALDKTGEIALYTKPDG 240
>gi|148703325|gb|EDL35272.1| exosome component 8, isoform CRA_a [Mus musculus]
Length = 119
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 71/114 (62%), Gaps = 4/114 (3%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSI----DFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI 127
E P +++PD G V + +PP+CS R G P E A V ++ ++D +
Sbjct: 64 AEFAAPPVDAPDRGYVVFLSVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVV 117
>gi|148703131|gb|EDL35078.1| exosome component 9, isoform CRA_a [Mus musculus]
gi|148703133|gb|EDL35080.1| exosome component 9, isoform CRA_a [Mus musculus]
Length = 437
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L V C + +V E+ +++++A+
Sbjct: 238 GGIML-LKDQVFRCSKIAGVKVAEITELIQKAL 269
>gi|187957240|gb|AAI58076.1| Exosc9 protein [Mus musculus]
Length = 438
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L V C + +V E+ +++++A+
Sbjct: 238 GGIML-LKDQVFRCSKIAGVKVAEITELIQKAL 269
>gi|48477465|ref|YP_023171.1| exosome complex RNA-binding protein Rrp42 [Picrophilus torridus DSM
9790]
gi|48430113|gb|AAT42978.1| ribonuclease PH [Picrophilus torridus DSM 9790]
Length = 260
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 110/235 (46%), Gaps = 24/235 (10%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L+ R+ I + A GSA+ ++G T ++A +K+E P ++PD+G ++++
Sbjct: 26 RLDGRGLNDFRDIKIFENYIPKASGSAMVELGRTKVVAGVKIEEGEPFPDTPDQGVMALN 85
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
M P+ P G P E A ++ + I S MI++ L + G WMV++DI +
Sbjct: 86 IEMLPMAFPTFEAGPPGEEAIEYSRVVDRGIRESKMIDVTRLVIEPGTKVWMVFIDIDII 145
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
+ G + DA+ ++AVAA N +P + E KL +
Sbjct: 146 NYAGNIIDASTIAAVAALRNAIVPASR----------------------IGGEDFKLPVN 183
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
P S+T + ++ DP EEE + +T+ + + + ++ K G V +T
Sbjct: 184 ANPVSVTMAKIGDELVIDPDLEEEQVSNGRITITMAEDDHIHAIQK--GDVGEFT 236
>gi|347442048|emb|CCD34969.1| similar to exosome complex endonuclease 2/ribosomal RNA processing
protein [Botryotinia fuckeliana]
Length = 294
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 124/267 (46%), Gaps = 19/267 (7%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++F + L E++R D RS + R + G G A ++G T +L I EV +P
Sbjct: 13 QFFSKALKENLRIDGRSFDQFRALELEFG---DEYGVADVRLGKTRVLVNITAEVTSPFP 69
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ +G +I + P+ SP RP E ++++ L T+ S ++ + L L+ G+
Sbjct: 70 DRLFDGIFTITTELSPMASPAFETNRPTEQEVLLSRLLEKTLRRSAALDTESLCLIAGQK 129
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W V D++ L DG L DA+ ++ +AA + + P S + + + +E+EP
Sbjct: 130 CWSVRADVHILSHDGNLIDASCIAIIAALQHFRKPDTSTEGETVTVYT------LAEREP 183
Query: 206 VNKEKRKLTLGGIPFSLTCILH----KNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
V L+L P +T + + L D T EE + E T+ ++ ++ +
Sbjct: 184 V-----PLSLLHFPLCVTFSFYGKGQEQTRLVDTTLTEEQLREGSCTISMNRHGEVCQIA 238
Query: 262 KPGGAVLAYTSAVQDCIALTRQRVKEL 288
K GG + +Q C + ++VK++
Sbjct: 239 KLGGIAVDAVELLQ-CTNIALEKVKDI 264
>gi|440908962|gb|ELR58930.1| Exosome complex exonuclease RRP45 [Bos grunniens mutus]
Length = 446
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 135/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTLE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP+ EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVVEITELIQKAL 269
>gi|12847890|dbj|BAB27749.1| unnamed protein product [Mus musculus]
Length = 395
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L V C + +V E+ +++++A+
Sbjct: 238 GGIML-LKDQVFRCSKIAGVKVAEITELIQKAL 269
>gi|301776905|ref|XP_002923870.1| PREDICTED: exosome complex exonuclease RRP45-like [Ailuropoda
melanoleuca]
Length = 440
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 134/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVLEITELIQKAL 269
>gi|9506981|ref|NP_062266.1| exosome complex component RRP45 [Mus musculus]
gi|14285679|sp|Q9JHI7.1|EXOS9_MOUSE RecName: Full=Exosome complex component RRP45; AltName:
Full=Autoantigen PM/Scl 1; AltName: Full=Exosome
component 9; AltName: Full=P75 polymyositis-scleroderma
overlap syndrome-associated autoantigen; AltName:
Full=Polymyositis/scleroderma autoantigen 1; AltName:
Full=Polymyositis/scleroderma autoantigen 75 kDa;
Short=PM/Scl-75
gi|8132103|gb|AAF73218.1|AF152841_1 polymyositis scleroderma overlap syndrome (PM-SCL) antigen 1 a [Mus
musculus]
gi|8132105|gb|AAF73219.1|AF152842_1 polymyositis scleroderma overlap syndrome (PM-SCL) antigen 1 b [Mus
musculus]
gi|13542847|gb|AAH05622.1| Exosome component 9 [Mus musculus]
gi|30354433|gb|AAH52156.1| Exosome component 9 [Mus musculus]
Length = 438
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L V C + +V E+ +++++A+
Sbjct: 238 GGIML-LKDQVFRCSKIAGVKVAEITELIQKAL 269
>gi|426231206|ref|XP_004009631.1| PREDICTED: exosome complex component RRP45 [Ovis aries]
Length = 440
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 135/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTLE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP+ EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVVEITELIQKAL 269
>gi|403290342|ref|XP_003936279.1| PREDICTED: exosome complex component RRP45 [Saimiri boliviensis
boliviensis]
Length = 440
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E++ P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVAPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELIQKAL 269
>gi|73983962|ref|XP_533302.2| PREDICTED: exosome complex component RRP45 isoform 1 [Canis lupus
familiaris]
Length = 440
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 134/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVLEITELIQKAL 269
>gi|78045505|ref|NP_001030225.1| exosome complex component RRP45 [Bos taurus]
gi|122140086|sp|Q3SWZ4.1|EXOS9_BOVIN RecName: Full=Exosome complex component RRP45; AltName:
Full=Exosome component 9
gi|74356309|gb|AAI04588.1| Exosome component 9 [Bos taurus]
Length = 440
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 135/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTLE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP+ EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVVEITELIQKAL 269
>gi|296486842|tpg|DAA28955.1| TPA: exosome complex exonuclease RRP45 [Bos taurus]
Length = 440
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 135/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTLE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP+ EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVVEITELIQKAL 269
>gi|452823313|gb|EME30324.1| exosome complex component RRP45 [Galdieria sulphuraria]
Length = 389
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 139/288 (48%), Gaps = 30/288 (10%)
Query: 24 PLRYFERHLA-----ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
PL E++ A IR D R + AR G S G+ ++G T + ++
Sbjct: 5 PLSLLEKNFALEALQAGIRVDGRKIDEARLVNFEFG---SQYGTVTVRLGKTKVFSSAIA 61
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSP-----LVRPGRPA---EAAPVVAKQLSDTISSS 130
EV+ P+++ P EG V+ + P+ S + GR + E A + + L I +
Sbjct: 62 EVVEPTIDRPAEGFVTFSVDLSPMASENLMLEYLYSGRTSSTLEEAAEIVRFLQQIIREN 121
Query: 131 GMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIV 190
I+ + L +V G W + +DI+ LD G + DA ++AVA+ +++ P V++ GK V
Sbjct: 122 QAIDTETLCIVAGVQVWAIRVDIHVLDHCGNVLDACCMAAVASLLHMRKPVVTV-VGKDV 180
Query: 191 MLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLT--CILHKNYILADPTSEEESIMETLVT 248
+ E+EPV LT+ +P S++ L + I DP+ +EES+ME ++
Sbjct: 181 FI-----HGIDEREPV-----PLTVHHLPISVSFGIFLDGDLIAIDPSIQEESVMEGTLS 230
Query: 249 VVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+ +++ ++ + K GGA + TS + + R E+ LE+A+
Sbjct: 231 IAVNAHKEICAFRKAGGASIE-TSLIFKNASYAYLRATEVTVQLEKAL 277
>gi|70794772|ref|NP_001020577.1| exosome complex component RRP45 [Rattus norvegicus]
gi|81918190|sp|Q4QR75.1|EXOS9_RAT RecName: Full=Exosome complex component RRP45; AltName:
Full=Exosome component 9
gi|67678411|gb|AAH97413.1| Exosome component 9 [Rattus norvegicus]
gi|149048739|gb|EDM01280.1| exosome component 9, isoform CRA_b [Rattus norvegicus]
gi|149048740|gb|EDM01281.1| exosome component 9, isoform CRA_b [Rattus norvegicus]
Length = 437
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L V C + +V E+ +++++A+
Sbjct: 238 GGIML-LKDQVFRCSKIAGVKVAEITELIQKAL 269
>gi|281343292|gb|EFB18876.1| hypothetical protein PANDA_013099 [Ailuropoda melanoleuca]
Length = 456
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 134/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVLEITELIQKAL 269
>gi|344245223|gb|EGW01327.1| Exosome complex exonuclease RRP45 [Cricetulus griseus]
Length = 386
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 135/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P ++ + Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICISFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ ++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITDLIQKAL 269
>gi|335293904|ref|XP_003129265.2| PREDICTED: exosome complex component RRP45-like [Sus scrofa]
Length = 440
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 134/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVLEITELIQKAL 269
>gi|354496605|ref|XP_003510416.1| PREDICTED: exosome complex component RRP45-like [Cricetulus
griseus]
Length = 437
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 135/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P ++ + Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICISFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ ++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITDLIQKAL 269
>gi|291401826|ref|XP_002717277.1| PREDICTED: exosome component 9 [Oryctolagus cuniculus]
Length = 440
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 136/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E++ P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVAPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S ++ + L +V G+
Sbjct: 69 NRATEGILFCNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCMDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P ++ + Y+L DPT EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGMYLLVDPTEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELIQKAL 269
>gi|217073740|gb|ACJ85230.1| unknown [Medicago truncatula]
Length = 286
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 127/283 (44%), Gaps = 21/283 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ E + +R D R R + G + A+GSA +IG+T ++A++K E+ PSL
Sbjct: 11 FIEGGITHDLRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAELGKPSLM 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI---------SSSGMINLKE 137
PD+G VSI CS P A ++ LS+ + + I+
Sbjct: 71 QPDKGKVSIYID----CSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGAAIDRSS 126
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L +V GK W +Y+D + +DG L D + A S+ IP V + G
Sbjct: 127 LVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKVALSSTGIPKVQIAAGA-------SS 179
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
+E E + +++ + GIP +T + + D T EEES M + V++ ++ +
Sbjct: 180 DEQPEVDVSDEDFMQFDTSGIPVIVTLTKVGKHYIVDATPEEESQMSSAVSISINRQGHI 239
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
+ K GGA L S + D +++ + ++L L+ I+ E
Sbjct: 240 CGVTKRGGAGLD-PSVILDMVSVAKHVSEQLINKLDSEIASAE 281
>gi|451850324|gb|EMD63626.1| hypothetical protein COCSADRAFT_26966 [Cochliobolus sativus ND90Pr]
Length = 291
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 130/269 (48%), Gaps = 16/269 (5%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ ++ L E IR D R+ R ++ G G A ++G T ++A I ++V TP E
Sbjct: 14 FIKQALQEQIRIDRRAFDAFRPLELTFG---DEYGVADVQLGKTRVIARISVDVTTPPPE 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+G I P+ SP GRP +A ++++ L I S ++ + L ++ G
Sbjct: 71 RKFDGIFQIVTEFSPMASPAFEVGRPTDAEVILSRILEKAIRRSNALDTESLCIIAGLKC 130
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
+ + D++ +D DG L DA+ ++ +AA + + P V ++ K +L E+EP+
Sbjct: 131 FALRADVHIVDHDGGLIDASCIAVMAALQHFRRPDVVVEGEKATIL------SVREREPI 184
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYI-LADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
L++ P +T + I L D EE + + V + ++ ++ + K GG
Sbjct: 185 -----PLSILHQPLCVTFSCFEGEIFLVDANLAEEQVRQGEVIITMNKHGEVCQIAKYGG 239
Query: 266 AVLAYTSAVQDCIALTRQRVKELHQILEE 294
A + + A+ +C + +Q+VK++ +++
Sbjct: 240 ATI-HPLALLNCTNIAQQKVKDIGAFIQK 267
>gi|384250624|gb|EIE24103.1| ribosomal protein S5 domain 2-like protein [Coccomyxa
subellipsoidea C-169]
Length = 293
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 124/253 (49%), Gaps = 24/253 (9%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
+Y + + +R D RS R +++G + GSA +G+T +L +K+E+ P
Sbjct: 8 QYTVQGFQDDLREDGRSCRDVRPLKLALGVLQQCSGSARCSLGNTEVLVGVKVEIGVPLE 67
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI---------SSSGMINLK 136
E+PD G + + CSP P ++ + +L+ ++ G ++L+
Sbjct: 68 ETPDCGGLQVTVE----CSPCAGPSYQGKSGEDLGVELTKSLERYLKPGRSGKGGCVDLR 123
Query: 137 ELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQ 196
LS+V G+ W++ +D L ADG++ DA ++A AA + +IP V + P+E+
Sbjct: 124 ALSIVSGRRCWILCIDALILAADGSVLDALSVAAKAALQDTRIPLVEV---GATENPDEE 180
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLTCIL-----HKNYILADPTSEEESIMETLVTVVL 251
E + +P + ++ +P +T + + YIL D +S+EE+ +++ V V +
Sbjct: 181 PELELDDDPAHAT--QVDTSSVPVIVTVYIVMFQAGRAYIL-DASSQEETCIDSAVQVAV 237
Query: 252 DSSNQLVSLYKPG 264
+ +L L+K G
Sbjct: 238 NGGGKLCGLFKVG 250
>gi|395328492|gb|EJF60884.1| ribosomal protein S5 domain 2-like protein [Dichomitus squalens
LYAD-421 SS1]
Length = 281
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 126/265 (47%), Gaps = 20/265 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +S+R D R++ R T+S G G +G T +LA + +++ P E P EG
Sbjct: 19 LKQSLRLDGRAMLEMRTPTLSFGPEL---GWVECAMGKTRVLAQVDGKMVKPPPERPLEG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+SI + P+ S PGRP E + + L + S ++ + L ++ G+ W + L
Sbjct: 76 IISIHSELSPMASNEYEPGRPTEEEVALTRMLDKVLRRSDAVDKESLCVLAGQRVWHIRL 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
I+ L G + D A L+ + A + + P V ++ +I + SE+ PV
Sbjct: 136 TIHVLSDAGNMVDCACLAGIVALKHFRRPEVEVEGDEITV------HHPSERAPV----- 184
Query: 212 KLTLGGIPFSLTCILHKNY-ILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAY 270
L++ PF T + L DP EE++ L++V L++ +L + K GG+ L
Sbjct: 185 PLSMHHTPFCFTFAFFPDAPPLVDPARLEETLSAGLLSVALNAQKELCVVQKAGGSPLPA 244
Query: 271 TS--AVQDCIALTRQRVKELHQILE 293
A+ D IA+ + R EL +++E
Sbjct: 245 EEVLAIMD-IAVAKAR--ELDRLVE 266
>gi|452843608|gb|EME45543.1| hypothetical protein DOTSEDRAFT_71300 [Dothistroma septosporum
NZE10]
Length = 299
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 115/239 (48%), Gaps = 16/239 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E++R D R+ + R+ ++ G G A ++G T ++ I E++TP + +G
Sbjct: 19 LRENVRFDGRAFDQFRDVQLAFG---EEYGVADVRLGKTRVMVTISAELVTPYPDRKFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + PI SP GR + ++++ L TI SG ++ + L ++ G W +
Sbjct: 76 VFTISTELSPIASPAFEVGRQDQTEVLLSRILEKTIRRSGALDTESLCIIAGAKCWHIRA 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
DI+ LD DG + DA+ ++ VAA + + P + ++ + E+EPV
Sbjct: 136 DIHILDHDGNIVDASCIALVAALMHFRRPDHEIHGEEVTVYG------LREREPV----- 184
Query: 212 KLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
KL + PF +T ++ +L D T EE E V V ++ ++ + K GG ++
Sbjct: 185 KLQMQHQPFCITTSYYEAGEIMLHDATLLEEQCREGDVVVSVNRFGEICQIAKFGGTLV 243
>gi|125539848|gb|EAY86243.1| hypothetical protein OsI_07612 [Oryza sativa Indica Group]
Length = 408
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 135/286 (47%), Gaps = 35/286 (12%)
Query: 16 VDAFRRLFPL----RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTT 71
+D +R P + ER L +R D R R I G DGSA ++G T
Sbjct: 1 MDHHQRWHPTVNEREFIERALQSDLRVDGRRPFDFRRLKILFG---REDGSAEVQLGDTR 57
Query: 72 MLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSG 131
++ +++ P + P+EG ++I P+ P PGRP E+A + + + + S
Sbjct: 58 VMGYATAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGESAIELGRVVDRGLRESR 117
Query: 132 MINLKELSLVGGKAAWMVYLDIYCLDADGALF--DAALLS-----------AVAAFSNLQ 178
++++ L +V GK W V +D++ LD G L DA +LS A+AA S +
Sbjct: 118 AVDMESLCVVAGKHVWSVRVDLHILDNGGELNVPDAMVLSLRNLIDAANIAALAALSTFR 177
Query: 179 IP--TVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL--HKNYILAD 234
P TV +DG+ V + +P ++ LT+ +P ++T N ++ D
Sbjct: 178 RPECTVGGEDGQQVTV----------HDPEVRDPLPLTIHHLPIAVTFAYFGEGNIMVID 227
Query: 235 PTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIAL 280
PT +EE++M +T ++S+ + S+ K GG + +S + C+ +
Sbjct: 228 PTYKEEAVMGGRMTATINSNGDVCSIQKAGGEGV-MSSVIMQCLRI 272
>gi|149698257|ref|XP_001503169.1| PREDICTED: exosome complex component RRP45-like [Equus caballus]
Length = 440
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 134/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCVVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVLAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKEQVLR-CSKIAGVKVAEITELIQKAL 269
>gi|119192860|ref|XP_001247036.1| hypothetical protein CIMG_00807 [Coccidioides immitis RS]
gi|392863730|gb|EAS35502.2| exosome complex endonuclease 2/ribosomal RNA processing protein
[Coccidioides immitis RS]
Length = 292
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 132/290 (45%), Gaps = 30/290 (10%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++ + E+ A R F L L ++R D R+L + R ++ G G ++G
Sbjct: 1 MARDTELSANERSFILEA----LHNNVRLDGRALDQFRPLNLTFG---DEYGHVKVQLGR 53
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
TT++ I EV P E +G ++ + + P GR ++ +++ L +
Sbjct: 54 TTVIVRISAEVTAPRPERDSDGIFTVSIELNDMALPGFETGRQSDLETQLSRTLDKIVRR 113
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189
S ++ + L + G + W V D++ +DADG L D L+ +A + +IP ++ DGK+
Sbjct: 114 SNALDTESLCIAKGLSCWNVRADVHIVDADGGLVDICCLAIMAGLLHFRIPESTVSDGKV 173
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLV 247
+ E EK PV L L +P S+T L+ L D TS EE++ E V
Sbjct: 174 TVYSPE------EKVPV-----PLNLTKVPLSITFNLYDEGKITLMDATSSEEAVSEGAV 222
Query: 248 TVVLDSSNQLVSLYKPGGA-------VLAYTSA---VQDCIALTRQRVKE 287
+ LD + ++ K G V T+A V+D AL ++R+ E
Sbjct: 223 IIALDKTGEIALYTKAEGTPADPLNMVACSTAALAKVRDLNALVQKRLGE 272
>gi|410956922|ref|XP_003985085.1| PREDICTED: exosome complex component RRP45 [Felis catus]
Length = 445
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 134/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN I+ G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKITFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVLEITELIQKAL 269
>gi|407464320|ref|YP_006775202.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosopumilus sp. AR2]
gi|407047508|gb|AFS82260.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosopumilus sp. AR2]
Length = 272
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 112/255 (43%), Gaps = 18/255 (7%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++S +D +R L E + R D R+L AR I A+ A+GSA +G
Sbjct: 1 MTSTSVIDELKRTQILELLE----QGKRVDGRALDEAREIKIETNAIPKANGSARVFLGD 56
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T ++ +K++ P ++ D+G + P+ P V G P +A+ + I
Sbjct: 57 TEVICGVKIQPDRPFPDTGDKGLFICTAELLPLSHPTVETGPPQPPVIELARVVDRGIRE 116
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189
S M+++ +L + K+ V+ D +D DG LFDA +A AA + P + D
Sbjct: 117 SHMVDVSQLVIEKDKSVIGVFADNVVVDYDGNLFDACSYAATAALLTTKTPKWNWTDDSP 176
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTV 249
V+ E R L + IP S+T NYI+ DP +E M+ VT+
Sbjct: 177 VL--------------AEGEDRPLPITTIPVSVTMGKIGNYIVVDPNGDEWESMDARVTI 222
Query: 250 VLDSSNQLVSLYKPG 264
DS + +L K G
Sbjct: 223 TTDSDGNICALQKGG 237
>gi|452000347|gb|EMD92808.1| hypothetical protein COCHEDRAFT_1020759 [Cochliobolus
heterostrophus C5]
Length = 291
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 127/269 (47%), Gaps = 16/269 (5%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ ++ L E IR D R+ R ++ G G A ++G T ++A I ++V TP E
Sbjct: 14 FIKQALQEQIRIDRRAFDAFRPLELTFG---DEYGVADVQLGKTRVIARISVDVTTPPPE 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+G I P+ SP GRP +A ++++ L I S ++ + L ++ G
Sbjct: 71 RKFDGIFQIVTEFSPMASPAFEVGRPTDAEVILSRILEKAIRRSNALDTESLCIIAGLKC 130
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
+ + D++ +D DG L DA+ ++ +AA + + P V ++ K +L E EP+
Sbjct: 131 FALRADVHIVDHDGGLIDASCIAVMAALQHFRRPDVVVEGEKATIL------SVREHEPI 184
Query: 207 NKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
L++ P +T L D EE + + V + ++ ++ + K GG
Sbjct: 185 -----PLSILHQPLCVTFSYFEGELFLVDANLAEEQVRQGEVIITMNKHGEVCQIAKYGG 239
Query: 266 AVLAYTSAVQDCIALTRQRVKELHQILEE 294
A + + A+ +C + +Q+VK++ +++
Sbjct: 240 ATI-HPLAILNCTNIAQQKVKDIGAFIQK 267
>gi|332244454|ref|XP_003271389.1| PREDICTED: exosome complex component RRP45 isoform 3 [Nomascus
leucogenys]
Length = 392
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ + + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVSLCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|332244450|ref|XP_003271387.1| PREDICTED: exosome complex component RRP45 isoform 1 [Nomascus
leucogenys]
Length = 439
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ + + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVSLCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|308502001|ref|XP_003113185.1| CRE-EXOS-9 protein [Caenorhabditis remanei]
gi|308265486|gb|EFP09439.1| CRE-EXOS-9 protein [Caenorhabditis remanei]
Length = 432
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 126/262 (48%), Gaps = 17/262 (6%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D RSL R+ + +G S G+A+ IG+T ++AA+ ++ PS P++G ++ID
Sbjct: 23 RFDFRSLEEFRDVKLVVG---SEVGTAICTIGNTKVMAAVSAQIAEPSSMRPNKGVINID 79
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ + R + + L I S I+++ L + G W V +D+ L
Sbjct: 80 VDLSPMANVANEHDRLGSKGMELIRLLELIIRDSRCIDVESLCIRAGSEIWKVRVDVRIL 139
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG+L D A L+A+ A + + P VSL+ ++ E EK PV L +
Sbjct: 140 DEDGSLLDCACLAAITALQHFKRPNVSLEAHHTLIYSE------YEKAPV-----PLNIY 188
Query: 217 GIPFSLTC-ILHK-NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAV 274
+P T +L K ++ DPT +E + ++ + V + ++ +L++ VL T +
Sbjct: 189 HMPICTTIGLLDKGQMVVIDPTEKEAACLDGSIVVACNKRREVCALHQSTNLVLT-TKQI 247
Query: 275 QDCIALTRQRVKELHQILEEAI 296
+ C+ L R + L ++ I
Sbjct: 248 ERCVKLAMARAEALTAVVSSII 269
>gi|390333942|ref|XP_788833.3| PREDICTED: exosome complex component RRP45-like [Strongylocentrotus
purpuratus]
Length = 479
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 137/272 (50%), Gaps = 17/272 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+ ES R D R R T I G G + +G T +LA + EV+ P P+EG
Sbjct: 16 IEESKRLDGRQPYDYRRTKIEFGV---ERGCCMVHMGDTRILAQVSCEVVEPKENRPNEG 72
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ ++ + P+ S GR ++ + + L T+ S ++++ L +V G+ W + L
Sbjct: 73 QLFVNLELSPMASTTFEAGRLSDYGIELNRLLERTVKDSRAVDVESLCIVAGEKVWKIRL 132
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ L+ DG + D+A L+A+AA S+ + P V++ G+ V + Q +++PV
Sbjct: 133 DVHVLNHDGNILDSACLAALAALSHFRRPDVTV-IGESVTIHSPQ-----DRDPV----- 181
Query: 212 KLTLGGIPFSLT-CILHK-NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
L + IP +T HK +L DPT +EE +ME + V ++ +L ++ + G++L
Sbjct: 182 PLNVHHIPVCVTFAFYHKGKRLLVDPTEKEEKVMEGTMVVGMNVHRELCTM-QVTGSMLI 240
Query: 270 YTSAVQDCIALTRQRVKELHQILEEAISGMEI 301
+ C + +V EL ++++ A+ +I
Sbjct: 241 LKEQIIRCCQIGVVKVSELTELIKLALEKDKI 272
>gi|240282302|gb|EER45805.1| exosome complex exonuclease RRP45 [Ajellomyces capsulatus H143]
Length = 293
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 114/237 (48%), Gaps = 18/237 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +++R D R+L + R T+S G G ++G T+++ I EV P E ++G
Sbjct: 19 LHKNVRLDGRALDQLRPLTVSFG---DEYGHVKLQLGKTSVVVRISAEVTKPRSERENDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + SP GR +E + + L I S ++ + L + GK W V
Sbjct: 76 IFTVSMELNDMASPAYETGRQSELESQLVRTLDRIIRRSNALDTESLCIAAGKNCWHVRA 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQKEENSEKEPVNKEK 210
D++ +D+DG L D+ L+ + + ++P + +G++ V PEE+ P+N
Sbjct: 136 DVHVVDSDGGLVDSCCLAIMTGLLHFRLPEAVVREGRVTVYRPEERV-----PSPLN--- 187
Query: 211 RKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
L +P S T ++ I+ D TS+EE++ E + + LD + ++ KP G
Sbjct: 188 ----LTKLPLSTTFNMYDEGRIIVLDATSKEEAVSEGSLIIALDKTGEIALYTKPDG 240
>gi|341897277|gb|EGT53212.1| CBN-EXOS-9 protein [Caenorhabditis brenneri]
Length = 432
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 126/262 (48%), Gaps = 17/262 (6%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L R + +GA G+A+ IG+T +LAA+ ++ PS P +G ++ID
Sbjct: 23 RFDFRGLEEFREVKLVVGAEI---GTAICTIGNTKVLAAVSAQIAEPSSMRPHKGVINID 79
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ + R + + L I S I+++ L + GK W V +D+ L
Sbjct: 80 VDLSPMANYANEHDRLGSRGMELIRLLELIIRDSRCIDVESLCIRAGKEIWKVRVDVRIL 139
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG+L D A L+A+ A + + P V+L+ ++ E EK PV L +
Sbjct: 140 DDDGSLLDCACLAAITALQHFKRPNVTLEPHHTLIYSE------YEKAPV-----PLNIY 188
Query: 217 GIPFSLTC-ILHK-NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAV 274
+P T +L K ++ DPT +E + ++ + V + ++ +L++ VL+ T +
Sbjct: 189 HMPICTTIGLLDKGQMVVIDPTDKEAACLDGSIVVACNKRREVCALHQSTNLVLS-TKQI 247
Query: 275 QDCIALTRQRVKELHQILEEAI 296
+ C+ L R + L ++ + +
Sbjct: 248 ERCVKLAMSRAEALTAVVSDVV 269
>gi|332244452|ref|XP_003271388.1| PREDICTED: exosome complex component RRP45 isoform 2 [Nomascus
leucogenys]
Length = 456
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ + + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVSLCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|6466958|gb|AAF13093.1|AC009176_20 hypothetical protein [Arabidopsis thaliana]
Length = 297
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 133/295 (45%), Gaps = 32/295 (10%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
+ + +A+ +R D R R + G + A+GSA +IG T ++A++K E+ PS
Sbjct: 9 HFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSS 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRP---GRPAEA-----APVVAKQLSDTISSSGM----- 132
PD+G V++ CSP P GR E A + + L S +G+
Sbjct: 69 LQPDKGKVAVFID----CSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGLQSSIH 124
Query: 133 -------INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD 185
INL L + GK W +Y+D + +DG L DA + AA +N IP V++
Sbjct: 125 VLVPGAGINLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVS 184
Query: 186 DGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMET 245
E +E E + ++E + +P +T + + D T+EEES M +
Sbjct: 185 -------AEVADDEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSS 237
Query: 246 LVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
V++ ++ + + L K G+ L S + D I++ + + L L+ IS E
Sbjct: 238 AVSISVNRTGHICGLTKRSGSGLD-PSVILDMISVAKHVTETLMSKLDSEISAAE 291
>gi|452985011|gb|EME84768.1| hypothetical protein MYCFIDRAFT_163550 [Pseudocercospora fijiensis
CIRAD86]
Length = 304
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 112/236 (47%), Gaps = 16/236 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E+IR D R+ + RN ++ G G+A +IG T +LA I V+ P + +G
Sbjct: 19 LRENIRLDGRAFDQFRNIDLAFG---EEYGTADVRIGKTRVLAKISATVVQPYEDRKFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + PI SP GR + ++++ L TI SG ++ + L +V G+ W V
Sbjct: 76 VFTISTELSPIASPAFEVGRQDQTEVLLSRILEKTIRRSGALDTESLCIVAGQKCWHVRA 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
DI+ LD DG L DAA + VAA + + P V + + + E+EPV
Sbjct: 136 DIHILDHDGNLVDAACAALVAAIMHFRRPDVEVHGEDVTVFG------LREREPV----- 184
Query: 212 KLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
KL + PF +T + +L D T EE E V V ++ ++ + K GG
Sbjct: 185 KLQMQHQPFCVTFSYYDAGEIMLQDATLLEEQCREGEVVVSINRFGEVCQIAKYGG 240
>gi|126330624|ref|XP_001362799.1| PREDICTED: exosome complex component RRP45-like isoform 1
[Monodelphis domestica]
Length = 438
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 135/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ +I + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEITLYALE------ERDP 182
Query: 206 VNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P ++ + Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICISFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLQDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|378733642|gb|EHY60101.1| exoribonuclease like to ribonuclease PH [Exophiala dermatitidis
NIH/UT8656]
Length = 291
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 118/256 (46%), Gaps = 21/256 (8%)
Query: 13 EMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTM 72
E+++ R F L E +++R D R L + R + GA G+A ++G T +
Sbjct: 4 EVDISNIERNFILEALE----QNVRVDGRPLDQFRGIELEFGA---EYGTATLRLGKTRV 56
Query: 73 LAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGM 132
I EV P E EG +I + PI SP GR E ++++ L I S
Sbjct: 57 HVQISAEVTKPLEERKFEGIFTIVTELSPIASPAYEVGRQTEQEVILSRILEKAIRRSNA 116
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVML 192
++ + L ++ G W V D++ LD+DG L DA+ ++ VAA + + P VS+D + +
Sbjct: 117 LDTESLCIIAGAKCWSVRADVHVLDSDGGLIDASCIAIVAALRHFRRPDVSVDGENVTIY 176
Query: 193 PEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVV 250
+E+ PV L+L P +T + +L D T EE + E V +
Sbjct: 177 T------MAERVPV-----PLSLMHNPVCITFSFYHGGETVLLDATRSEEQVREAEVILT 225
Query: 251 LDSSNQLVSLYKPGGA 266
++ +L + K GG+
Sbjct: 226 VNDF-ELCQIAKLGGS 240
>gi|332820219|ref|XP_001154217.2| PREDICTED: exosome complex component RRP45 isoform 7 [Pan
troglodytes]
Length = 392
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|417400960|gb|JAA47389.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp45
[Desmodus rotundus]
Length = 440
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 134/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R R+ IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRSIKISFG---TDYGCCVVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + SP PGR ++ + + L + +S I+ + L ++ G+
Sbjct: 69 NRATEGILFFNLELSQMASPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVIAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S ++L DP+ EE +M+ L+ + ++ ++ +L
Sbjct: 183 V-----PLSVHHMPICVSFAFFQQGTFLLVDPSEREERVMDGLLVIAMNKHREICTLQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L V C + +V E+ +++++A+
Sbjct: 238 GGIML-LNEQVLRCSKIAGVKVTEITELIQKAL 269
>gi|402870363|ref|XP_003899196.1| PREDICTED: exosome complex component RRP45 isoform 3 [Papio anubis]
Length = 392
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|122920907|pdb|2NN6|A Chain A, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 358
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 135/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 29 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 85
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + + + +S I+ + L +V G+
Sbjct: 86 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEK 145
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 146 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 199
Query: 206 VNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P ++ + Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 200 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 254
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 255 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 286
>gi|46122263|ref|XP_385685.1| hypothetical protein FG05509.1 [Gibberella zeae PH-1]
Length = 293
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 124/274 (45%), Gaps = 18/274 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + L E +R D R R I+ G G A K G T +LA + EV P +
Sbjct: 14 FLAQALNEGLRLDGRKFDEFRPLEITFG---DEYGVAEVKYGKTRVLAKVSAEVTVPYTD 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P +G +I + P+ +P RP+ ++++ L TI SG ++ + L L+ GK
Sbjct: 71 RPFDGVFTITSELSPMVAPSYEVNRPSLEEVLLSRLLEKTIRRSGALDTESLCLIAGKKC 130
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W + +D++ L DG L DAA ++ +AA + + P S++ + + +E+EPV
Sbjct: 131 WSIRVDLHVLAHDGNLTDAACVAVIAALRHFRKPDSSIEGETLTIYTP------AEREPV 184
Query: 207 NKEKRKLTLGGIPFSLTCILH---KNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
L+ PF +T + + +L D EE + + T L+ ++ + K
Sbjct: 185 -----PLSWLHSPFCVTYSFYGEDGSQVLVDTNWLEEKMRVSHCTYSLNKHGEISQISKL 239
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
GG L +Q C R K+L I++ ++
Sbjct: 240 GGKALDAPLFIQ-CAQGALNRSKDLSNIVDNKLA 272
>gi|297293310|ref|XP_001101063.2| PREDICTED: exosome complex exonuclease RRP45 [Macaca mulatta]
Length = 432
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|297674272|ref|XP_002815156.1| PREDICTED: exosome complex component RRP45 isoform 5 [Pongo abelii]
Length = 392
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREECVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|114595906|ref|XP_001154031.1| PREDICTED: exosome complex component RRP45 isoform 4 [Pan
troglodytes]
Length = 456
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|297674268|ref|XP_002815154.1| PREDICTED: exosome complex component RRP45 isoform 3 [Pongo abelii]
gi|297674270|ref|XP_002815155.1| PREDICTED: exosome complex component RRP45 isoform 4 [Pongo abelii]
Length = 456
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREECVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|426345383|ref|XP_004040394.1| PREDICTED: exosome complex component RRP45 isoform 3 [Gorilla
gorilla gorilla]
Length = 392
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRHSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|297674264|ref|XP_002815152.1| PREDICTED: exosome complex component RRP45 isoform 1 [Pongo abelii]
gi|297674266|ref|XP_002815153.1| PREDICTED: exosome complex component RRP45 isoform 2 [Pongo abelii]
Length = 439
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREECVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|6648187|gb|AAF21185.1|AC013483_9 putative 3' exoribonuclease [Arabidopsis thaliana]
Length = 293
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 128/287 (44%), Gaps = 20/287 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
+ + +A+ +R D R R + G + A+GSA +IG T ++A++K E+ PS
Sbjct: 9 HFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSS 68
Query: 86 ESPDEGCVSIDFHMPPICSPLV--RPGRPAEAAPVVAKQLSDTISSSGM----------I 133
PD+G V++ P P R G + +A Q SG I
Sbjct: 69 LQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAAIHVLVPGAGI 128
Query: 134 NLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLP 193
NL L + GK W +Y+D + +DG L DA + AA +N IP V++
Sbjct: 129 NLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVS-------A 181
Query: 194 EEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDS 253
E +E E + ++E + +P +T + + D T+EEES M + V++ ++
Sbjct: 182 EVADDEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNR 241
Query: 254 SNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
+ + L K G+ L S + D I++ + + L L+ IS E
Sbjct: 242 TGHICGLTKRSGSGLD-PSVILDMISVAKHVTETLMSKLDSEISAAE 287
>gi|424811893|ref|ZP_18237133.1| RNase PH-related exoribonuclease [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756115|gb|EGQ39698.1| RNase PH-related exoribonuclease [Candidatus Nanosalinarum sp.
J07AB56]
Length = 260
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 128/267 (47%), Gaps = 17/267 (6%)
Query: 30 RHLA-ESIRPDARSLSRARNTTISMGAV-ASADGSALAKIGSTTMLAAIKMEVMTPSLES 87
R LA E R D R R + G + +A+GSA IG T ++ +K++V P +
Sbjct: 9 RSLADEGERLDGRQPHEYREIELETGYINETAEGSAYVSIGDTQLVVGLKVDVEEPYDDR 68
Query: 88 PDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAW 147
PD G + + + P+ + G P E +A+ + I + ++ +EL + G+ +
Sbjct: 69 PDAGTLVTNAELAPMAAREYESGPPQEPGVELARVVDRGIREAPAVDFEELCIEEGEKVY 128
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVN 207
+++D++ L+ DG L DAA L A+A+ + +P + ++G L EQ EE S+
Sbjct: 129 TLFIDVHVLNDDGNLLDAAALGAMASLKDGFLPDYNEEEG----LLREQPEEGSD----- 179
Query: 208 KEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAV 267
+ + +P + T + +L D TS EE + +T+ +V++ K GG
Sbjct: 180 -----IPMESVPITATGRRIGDNLLFDTTSREEEALGARLTIAFTEDGNIVAMQK-GGDD 233
Query: 268 LAYTSAVQDCIALTRQRVKELHQILEE 294
S V + + + Q+ + L ++LE+
Sbjct: 234 SMELSDVTEAVEIAEQKSEMLREVLEQ 260
>gi|348582824|ref|XP_003477176.1| PREDICTED: exosome complex component RRP45-like [Cavia porcellus]
Length = 439
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 132/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E++ P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVAPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P V + ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVCVQGEEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----ALSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELIQKAL 269
>gi|114595908|ref|XP_001154164.1| PREDICTED: exosome complex component RRP45 isoform 6 [Pan
troglodytes]
gi|410265114|gb|JAA20523.1| exosome component 9 [Pan troglodytes]
gi|410292732|gb|JAA24966.1| exosome component 9 [Pan troglodytes]
Length = 439
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|402870361|ref|XP_003899195.1| PREDICTED: exosome complex component RRP45 isoform 2 [Papio anubis]
Length = 456
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|402870359|ref|XP_003899194.1| PREDICTED: exosome complex component RRP45 isoform 1 [Papio anubis]
gi|380813850|gb|AFE78799.1| exosome complex component RRP45 isoform 2 [Macaca mulatta]
Length = 439
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|426345381|ref|XP_004040393.1| PREDICTED: exosome complex component RRP45 isoform 2 [Gorilla
gorilla gorilla]
Length = 456
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRHSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|225430430|ref|XP_002285435.1| PREDICTED: exosome complex component RRP42 [Vitis vinifera]
gi|296082105|emb|CBI21110.3| unnamed protein product [Vitis vinifera]
Length = 287
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 135/289 (46%), Gaps = 31/289 (10%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
+ + +A+ +R D R R + G + A+GSA ++G T ++A++K E+ PS
Sbjct: 10 HFIQGGIAQDLRTDGRRRLTYRPFNVETGVIPQANGSARVRLGGTDVIASVKAELGKPSP 69
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI--------SSSGM-INLK 136
PD+G V+I P +P+ GR E ++ +LS + S +G I+L
Sbjct: 70 SQPDKGKVNIYVDCSPTAAPMFE-GRGGEE---LSTELSGALQHCLLGGKSGAGAGIDLS 125
Query: 137 ELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL-----DDGKIVM 191
L +V GK W +Y+D + +DG L DA + AA +N IP V + DG
Sbjct: 126 SLVVVEGKVCWDLYIDGLVVSSDGNLLDALGAAIKAALTNTGIPKVEVAVGASGDG---- 181
Query: 192 LPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVL 251
LPE ++ E + G+P +T + + D T EEES M + V+V +
Sbjct: 182 LPEVDISDD--------EYLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAVSVSV 233
Query: 252 DSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
++ L K GGA L S + D I++ + ++L L+ IS E
Sbjct: 234 SGQGRICGLIKRGGAGLD-PSVILDMISVAKHVSEQLMNKLDSEISAAE 281
>gi|355687576|gb|EHH26160.1| hypothetical protein EGK_16059 [Macaca mulatta]
gi|355749543|gb|EHH53942.1| hypothetical protein EGM_14660 [Macaca fascicularis]
Length = 456
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|426345379|ref|XP_004040392.1| PREDICTED: exosome complex component RRP45 isoform 1 [Gorilla
gorilla gorilla]
Length = 439
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRHSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|336369000|gb|EGN97342.1| hypothetical protein SERLA73DRAFT_169702 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381784|gb|EGO22935.1| hypothetical protein SERLADRAFT_450637 [Serpula lacrymans var.
lacrymans S7.9]
Length = 282
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 123/265 (46%), Gaps = 18/265 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L ES+R D R R +++ G G +G T ++A + +++ P E P EG
Sbjct: 18 LKESLRLDGRQFLHTRTPSLTFGPEL---GWVECAMGDTRVIAQVDGKMVKPLPERPFEG 74
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++I + P+ S PGRP+E ++ + L I S ++ + L ++ G+ W + L
Sbjct: 75 MITIHSEISPMASSEYEPGRPSEEEVIITRMLDKVIRRSDAVDKESLCVLAGQRVWHLRL 134
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
I+CL G + D A L+ + A + + P V + ++ + +E+ P+
Sbjct: 135 TIHCLADAGNMLDCACLAGIVALKHFRRPEVEVIGDEVTI------HAPTERAPI----- 183
Query: 212 KLTLGGIPFSLTCILHKNYIL---ADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
L + P+ T + + DPT E+ + L+T+ L++ ++ L K GG L
Sbjct: 184 PLAIHHTPYCFTFAFFPDPTIRPVVDPTLLEQRLSAGLLTIALNAQREICVLQKAGGTPL 243
Query: 269 AYTSAVQDCIALTRQRVKELHQILE 293
A + + + + + K+L Q++E
Sbjct: 244 A-PNEISNVVRIAVGLAKDLDQLVE 267
>gi|408397088|gb|EKJ76238.1| hypothetical protein FPSE_03493 [Fusarium pseudograminearum CS3096]
Length = 293
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 125/277 (45%), Gaps = 24/277 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + L E +R D R R I+ G G A K G T +LA + EV P +
Sbjct: 14 FIAQALNEGLRLDGRKFDEFRPLEITFG---DEYGVAEVKYGKTRVLAKVSAEVTVPYTD 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P +G +I + P+ +P RP+ ++++ L TI SG ++ + L L+ GK
Sbjct: 71 RPFDGVFTITSELSPMVAPSYEVNRPSLEEVLLSRLLEKTIRRSGALDTESLCLIAGKKC 130
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W + +D++ L DG L DAA ++ +AA + + P S++ + + ++E+EPV
Sbjct: 131 WSIRVDLHVLAHDGNLTDAACVAVIAALRHFRKPDSSIEGETLTIYT------SAEREPV 184
Query: 207 NKEKRKLTLGGIPFSLTCILHKNY------ILADPTSEEESIMETLVTVVLDSSNQLVSL 260
L+ PF C+ + Y +L D EE + + T L+ ++ +
Sbjct: 185 -----PLSWLHSPF---CVTYSFYGEDGSQVLVDTNWLEEKMRISHCTYSLNKHGEISQI 236
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
K GG L +Q C R K+L +++ ++
Sbjct: 237 SKLGGKALDAPLFIQ-CAQGALNRSKDLSNLVDNKLA 272
>gi|268573886|ref|XP_002641920.1| C. briggsae CBR-EXOS-9 protein [Caenorhabditis briggsae]
Length = 434
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 132/283 (46%), Gaps = 22/283 (7%)
Query: 21 RLFPLRYFERH-----LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAA 75
R+ PL E+ L R D R L R + +G S G+A+ IG+T ++AA
Sbjct: 2 RVPPLTTCEKEVILEALKSGKRFDFRGLEEFRGVKLVVG---SEIGTAICTIGNTKVIAA 58
Query: 76 IKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINL 135
+ ++ PS P +G + ID + P+ + R + + L I S I++
Sbjct: 59 VSAQIAEPSSMRPHKGVIIIDVDLSPMANVSNEHDRLGSKGMELIRLLELIIRDSRCIDV 118
Query: 136 KELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEE 195
+ L + GK W V +D+ LD DG+L D A L+A+ A + + P V+L+ ++ E
Sbjct: 119 ESLCIRAGKEIWKVRVDVRILDEDGSLLDCACLAAITALQHFKRPNVTLEPHHTLIYSE- 177
Query: 196 QKEENSEKEPVNKEKRKLTLGGIPFSLTC-ILHK-NYILADPTSEEESIMETLVTVVLDS 253
EK PV L + +P T +L K ++ DPT +E + ++ + V +
Sbjct: 178 -----YEKAPV-----PLNIYHMPICTTIGLLDKGQMVVIDPTEKEAACLDGSIVVACNK 227
Query: 254 SNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
++ +L++ VL+ T ++ C+ L R + L ++ + I
Sbjct: 228 RREVCALHQSTNLVLS-TKQIERCVKLAMSRAEALTAVVSDVI 269
>gi|303312521|ref|XP_003066272.1| 3' exoribonuclease family, domain 1 containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240105934|gb|EER24127.1| 3' exoribonuclease family, domain 1 containing protein
[Coccidioides posadasii C735 delta SOWgp]
Length = 292
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 132/290 (45%), Gaps = 30/290 (10%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++ + E+ A R F L L ++R D R+L + R ++ G G ++G
Sbjct: 1 MARDTELSANERSFILEA----LHNNVRLDGRALDQFRPLNLTFG---DEYGHVKVQLGR 53
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T+++ I EV P E +G ++ + + P GR ++ +++ L +
Sbjct: 54 TSVIVRISAEVTAPRPERDSDGIFTVSIELNDMALPGFETGRQSDLETQLSRTLDKIVRR 113
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189
S ++ + L + G + W V D++ +DADG L D L+ +A + +IP ++ DGK+
Sbjct: 114 SNALDTESLCIAKGLSCWNVRADVHIVDADGGLVDICCLAIMAGLLHFRIPESTVSDGKV 173
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLV 247
+ E EK PV L L +P S+T L+ L D TS EE++ E V
Sbjct: 174 TVYSPE------EKVPV-----PLNLTKVPLSITFNLYDEGKITLMDATSSEEAVSEGAV 222
Query: 248 TVVLDSSNQLVSLYKPGGA-------VLAYTSA---VQDCIALTRQRVKE 287
+ LD + ++ K G V T+A V+D AL ++R+ E
Sbjct: 223 IIALDKTGEIALYTKAEGTPADPLNMVACSTAALAKVRDLNALVQKRLGE 272
>gi|194378034|dbj|BAG63380.1| unnamed protein product [Homo sapiens]
Length = 392
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + + + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|257076445|ref|ZP_05570806.1| exosome complex RNA-binding protein Rrp42 [Ferroplasma acidarmanus
fer1]
Length = 260
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 22/226 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L R I+ V A GSA+ +IG T ++A IK+E P +SPD G ++++
Sbjct: 26 RLDGRGLQDYREIKITENFVPKAAGSAMVEIGKTKVVAGIKVEEGDPFEDSPDSGVMALN 85
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ P G P+E A ++ + I S M++ +L + GK WM+++DI L
Sbjct: 86 IELLPMAFPTFESGPPSEQAIEYSRVVDRGIRESKMVDTSKLVIESGKRVWMIFVDIDVL 145
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
+ DG + DAA L+AV A N +P + ++ L +
Sbjct: 146 NYDGNIIDAATLAAVTALKNTVVPA----------------------SKIGQKDYSLPIN 183
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
P S+T + + I+ DP EEE + +TV + + + ++ K
Sbjct: 184 ATPVSITMVKIGDEIVCDPDLEEEQVSNGRITVTIAEDHNIHAMQK 229
>gi|325088441|gb|EGC41751.1| exosome complex exonuclease RRP45 [Ajellomyces capsulatus H88]
Length = 293
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 121/256 (47%), Gaps = 22/256 (8%)
Query: 13 EMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTM 72
E ++ A R F L L +++R D R+L + R T+S + G ++G T++
Sbjct: 4 EADISANERAFILEA----LHKNVRLDGRALDQLRPLTVSF---SDEYGHVKLQLGKTSV 56
Query: 73 LAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGM 132
+ I EV P E ++G ++ + + SP GR +E + + L I S
Sbjct: 57 VVRISAEVTKPRSERENDGIFTVSVELNDMASPAYETGRQSELESQLVRTLDRIIRRSNA 116
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VM 191
++ + L + GK W V D++ +D+DG L D+ L+ + + ++P + +G++ V
Sbjct: 117 LDTESLCIAAGKNCWHVRADVHVVDSDGGLVDSCCLAIMTGLLHFRLPEAVVREGRVTVY 176
Query: 192 LPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTV 249
PEE+ P+N L +P S T ++ I+ D TS+EE++ E + +
Sbjct: 177 RPEERV-----PSPLN-------LTKLPLSTTFNMYDEGRIIVLDATSKEEAVSEGSLII 224
Query: 250 VLDSSNQLVSLYKPGG 265
LD + ++ KP G
Sbjct: 225 ALDKTGEIALYTKPDG 240
>gi|303279202|ref|XP_003058894.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460054|gb|EEH57349.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 292
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 127/266 (47%), Gaps = 20/266 (7%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E IR D R AR G DG +G T +LA ++ P +EG V
Sbjct: 25 EDIRIDLRGPFDAREVAYRFG---PKDGVCEVSLGKTRVLAVTSAKLEPPGGGRSNEGSV 81
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDI 153
+I+ P+ SP PGRP E A +A L I +G ++++ L ++ G+ W + +D+
Sbjct: 82 TINVEFSPMASPNFEPGRPGEEASELAVVLERAIRETGAVDVESLCVLAGRRVWNIRVDV 141
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGK--IVMLPEEQKEENSEKEPVNKEKR 211
+ LDA G + AA L+A A+ + + P ++D + + P + +EP+
Sbjct: 142 HVLDACGNIAGAASLAANASLLSFRRPEATVDPSTQLVTVHPADA------REPI----- 190
Query: 212 KLTLGGIPFSLTCIL---HKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
L L +P ++ H+ ++ DP +EE++M + + VVL++ +L ++ K GG V
Sbjct: 191 PLALHHLPIAVKFGFFAEHEGLLIVDPLVDEEAVMASSLIVVLNAHGELCAVQK-GGGVG 249
Query: 269 AYTSAVQDCIALTRQRVKELHQILEE 294
+ + C+ + + KEL L E
Sbjct: 250 VPANEIMRCVRIADKMTKELTTQLRE 275
>gi|77812672|ref|NP_001029366.1| exosome complex component RRP45 isoform 1 [Homo sapiens]
gi|28172868|emb|CAD56889.1| polymyositis/scleroderma autoantigen 1 [Homo sapiens]
gi|119625652|gb|EAX05247.1| exosome component 9, isoform CRA_a [Homo sapiens]
Length = 456
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + + + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|388579995|gb|EIM20313.1| exosome complex exonuclease rrp45 [Wallemia sebi CBS 633.66]
Length = 286
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 128/279 (45%), Gaps = 24/279 (8%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E+ R D RSL R I G GS K+G ++++++ V P+ E P EG
Sbjct: 19 LKENKRLDGRSLLEGRPIEIQFGKPL---GSVTIKLGECSVMSSVSCTVTQPTPERPYEG 75
Query: 92 CVSIDFHMPPICSPLVRPG---RPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWM 148
++I + + +P PG AE + +QL I SGM++ + L ++GG+ W
Sbjct: 76 QLNISSELSAMTTPFYEPGMRGNTAEEEATLNRQLDKAIRRSGMVDREALCIIGGEKVWS 135
Query: 149 VYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNK 208
+ L ++ + DG L DA +++A AA + + P ++ ++ E+ E+ PV
Sbjct: 136 LNLTLHYISDDGNLIDAGVIAAAAALLHFRRPDATVIGNEVTYHSED------ERVPV-- 187
Query: 209 EKRKLTLGGIPFSLTCILHKNYILA--DPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
L + P S + + ++ A DPT+ E + T+ +++++ K GG
Sbjct: 188 ---PLAINHTPISFSYVFFDDFDNAVLDPTALESQLSSATFTITTTPQKEVLTITKNGGT 244
Query: 267 VLAYTSAVQDCIALTRQRV----KELHQILEEAISGMEI 301
A V DC+ +R K+LH + E + +I
Sbjct: 245 TFA-PQTVLDCLGHATERAAVISKQLHTAINEDLDRRKI 282
>gi|126459545|ref|YP_001055823.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum calidifontis
JCM 11548]
gi|126249266|gb|ABO08357.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum calidifontis
JCM 11548]
Length = 274
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 126/238 (52%), Gaps = 15/238 (6%)
Query: 30 RHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPD 89
R +A R D R + + R + G V +ADGSA K+G T ++A +K+ + P ++PD
Sbjct: 22 RLIASKARIDGREVDQVRPVEVKTGVVKTADGSAEVKLGKTHVVAGVKIGLGQPFPDAPD 81
Query: 90 EGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMV 149
EG + ++ + P SP G P E A +A+ + + G ++ K+LS+ GGK A+++
Sbjct: 82 EGVLVVNAEVLPHASPYTEVGPPDEFAIELARVVDRGLRHCGYVDFKKLSVEGGK-AYVL 140
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKE-PVNK 208
++D+Y ++ DG L DAA L+AVAA N +P V D+ V L + NS P++
Sbjct: 141 WVDLYVINDDGNLVDAANLAAVAALKNAALPAVVKDETGAVKL-----DRNSRTPMPLDL 195
Query: 209 EKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
EK P +++ N + DP EEE ++ +T + ++V++ K G+
Sbjct: 196 EK-------APIAVSVGKIANVLFLDPIFEEELSLDGRITYTF-AQERIVAIQKTLGS 245
>gi|124514000|ref|XP_001350356.1| exosome complex exonuclease, putative [Plasmodium falciparum 3D7]
gi|23615773|emb|CAD52765.1| exosome complex exonuclease, putative [Plasmodium falciparum 3D7]
Length = 477
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 128/277 (46%), Gaps = 23/277 (8%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
+ +F +++ ++IR D R+ +RN I+ G IG T ++ I E++ P
Sbjct: 8 VNHFWKNIKKNIRLDGRTFEDSRNVCINF---LKDYGHVEISIGFTKVICKITSEIVKPH 64
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGK 144
EG + I+ + ++ + + + +S +IN + L ++ GK
Sbjct: 65 DRKLKEGILKINLDIDNFIEDNENSDNMSDECLEIKNIIDRVLKTSNIINFESLCIIPGK 124
Query: 145 AAWMVYLDIYCLDADGALFDAALLSAVAA---FSNLQIPTVSLDDGKIVMLPEEQKEENS 201
W + ++I ++ DG L DA LSA F N Q+ + +G I++
Sbjct: 125 KVWCICINIMVIENDGNLTDACYLSAYCGLVHFKNHQVRVIK--NGDIII---------- 172
Query: 202 EKEPVNKEKRKLTLGGIPFSLTCILHKNY--ILADPTSEEESIMETLVTVVLDSSNQLVS 259
+KE +N L++ P T ++ + L DP EE M + +++ L+ + L+S
Sbjct: 173 DKEEINYS--PLSILNSPIVTTFAYYEEHDVCLIDPCLHEEEFMSSKISIALNKNGNLIS 230
Query: 260 LYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
L KPGG LA S + + I + ++R+ + +ILE+ +
Sbjct: 231 LLKPGGIPLA-CSHIMESIEIAKKRILTILKILEDTL 266
>gi|77812670|ref|NP_005024.2| exosome complex component RRP45 isoform 2 [Homo sapiens]
gi|147744559|sp|Q06265.3|EXOS9_HUMAN RecName: Full=Exosome complex component RRP45; AltName:
Full=Autoantigen PM/Scl 1; AltName: Full=Exosome
component 9; AltName: Full=P75 polymyositis-scleroderma
overlap syndrome-associated autoantigen; AltName:
Full=Polymyositis/scleroderma autoantigen 1; AltName:
Full=Polymyositis/scleroderma autoantigen 75 kDa;
Short=PM/Scl-75
gi|28172864|emb|CAD44530.1| polymyositis/scleroderma autoantigen 1 [Homo sapiens]
gi|119625653|gb|EAX05248.1| exosome component 9, isoform CRA_b [Homo sapiens]
Length = 439
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + + + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|397490989|ref|XP_003816463.1| PREDICTED: exosome complex component RRP45 isoform 3 [Pan paniscus]
Length = 392
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 132/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ + DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLFNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|146218577|gb|AAI40040.1| Exosome component 9 [synthetic construct]
gi|146218579|gb|AAI40039.1| Exosome component 9 [synthetic construct]
gi|148745755|gb|AAI42979.1| Exosome component 9 [Homo sapiens]
Length = 439
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 135/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + + + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P ++ + Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGAYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|320591825|gb|EFX04264.1| exosome subunit rrp45 [Grosmannia clavigera kw1407]
Length = 294
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 132/275 (48%), Gaps = 21/275 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ ++ L + R D RS R +++G G A +IG+T ++A EV TP +
Sbjct: 14 FVKQALQDGQRLDGRSFEDYRPIDLTLG---DEFGVADVRIGNTRVVAKATAEVTTPFSD 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P +G +I + P+ SP GRP+EA ++++ L TI SG ++ + L L G
Sbjct: 71 RPFDGIFNIVTELSPMASPSFEAGRPSEAEVLLSRILEKTIRRSGALDTESLCLAAGNKC 130
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQKEENSEKEP 205
W V +D++ + +G L DA+ L+ VAA + + S+++G + V P +E+EP
Sbjct: 131 WSVRVDVHVMSHEGNLVDASCLAVVAALRHFRKAETSIENGVLTVYTP-------AEREP 183
Query: 206 VNKEKRKLTLGGIPFSLTCILHK----NYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
V L+ PF +T + L D + EE + T+ ++ ++ +
Sbjct: 184 V-----PLSWLHSPFCVTFSFFEADDTEITLLDASLLEEQTRVSSCTISINRHGEICQVA 238
Query: 262 KPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
K GG + + ++ C ++ + K+L L++ +
Sbjct: 239 KLGGTPVEAVTILK-CTSIALAKAKDLSVFLDKKL 272
>gi|397490985|ref|XP_003816461.1| PREDICTED: exosome complex component RRP45 isoform 1 [Pan paniscus]
Length = 439
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 132/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ + DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLFNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|313230944|emb|CBY18942.1| unnamed protein product [Oikopleura dioica]
Length = 441
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 126/276 (45%), Gaps = 26/276 (9%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+ E R D RS R +I G G+ +A IG+T LA + + PS P EG
Sbjct: 18 IFEGSRLDGRSYLEMRKCSIEFG---QEFGTCVASIGNTRALAHVSCSLDRPSEVRPSEG 74
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ +PP+ SP + + A + + L I S I+++EL + G+ W + +
Sbjct: 75 KIVFKVELPPLASPSFELNKKSAFAIDLNRLLEKAIVQSRCIDIEELCVRAGEQCWTLRV 134
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
++ L+ +G L DA L+A+ A + + P V++D + + + EKEP
Sbjct: 135 EVTALNHEGNLSDALCLAAMGALMHFKRPEVTVDGHDVKIHTAD------EKEPT----- 183
Query: 212 KLTLGGIPFSLTCIL-----------HKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
+LTL PF +T + ++ DP +EE ++ ++++ ++ ++ ++
Sbjct: 184 RLTLHHKPFCVTIGYIEDGRTDSDGDRQKILVLDPVRQEEQVLSGIISIAINKHREICAM 243
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
G L S + C + +VK+L ++E AI
Sbjct: 244 RVSGNRELD-CSQILSCTKIAAAKVKDLQSLIESAI 278
>gi|397490987|ref|XP_003816462.1| PREDICTED: exosome complex component RRP45 isoform 2 [Pan paniscus]
Length = 456
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 132/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ + DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLFNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>gi|312080640|ref|XP_003142686.1| hypothetical protein LOAG_07104 [Loa loa]
gi|307762153|gb|EFO21387.1| hypothetical protein LOAG_07104 [Loa loa]
Length = 521
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 143/315 (45%), Gaps = 39/315 (12%)
Query: 9 DLSSEMEVDAFRR--------------LFPLRYFERH-----LAESI------RPDARSL 43
++S+E VD FRR + P +Y R+ L + I R D R
Sbjct: 98 EMSTEKAVDYFRRKQAFLKQQMEVIEGVLPEKYRARNAIVDNLQKKINVYCSQRIDGRKC 157
Query: 44 SRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPIC 103
R + +G S GS L +G T +LA + ++ PS + G V + M P+
Sbjct: 158 DEFREVKVIVG---SELGSCLVMLGETKVLAQVSCSLVEPSTVRGNMGTVEVHVDMSPMA 214
Query: 104 SPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALF 163
SP GR + + L +SG+I+L+ L L K W + +D++ L +DG+L
Sbjct: 215 SPDYEDGRLGSKGLELMRILELLYRNSGVIDLESLCLRTFKQVWQIRIDVHVLASDGSLV 274
Query: 164 DAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLT 223
D A ++++ A ++ + P VS+ I++ N EK P++ L + +P +T
Sbjct: 275 DCACIASLTALAHFRRPDVSVLPDSIII----ASHGNDEKMPIS-----LNIYHMPVCIT 325
Query: 224 C-ILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTR 282
I + DPT +EE + + V + +++ +L++ G +L+ VQ C+
Sbjct: 326 FGITSDGQNIIDPTDKEEQCLRGSLIVATNKRHEICALHQSGNFLLSEQLIVQ-CVDRAI 384
Query: 283 QRVKELHQILEEAIS 297
QR ++ +++ I+
Sbjct: 385 QRAVDVSELIYSVIA 399
>gi|19075183|ref|NP_587683.1| exosome subunit Rrp45 (predicted) [Schizosaccharomyces pombe 972h-]
gi|21759396|sp|O74918.1|RRP45_SCHPO RecName: Full=Exosome complex component rrp45; AltName:
Full=Ribosomal RNA-processing protein 45
gi|3702641|emb|CAA21233.1| exosome subunit Rrp45 (predicted) [Schizosaccharomyces pombe]
Length = 291
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 120/261 (45%), Gaps = 20/261 (7%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
+S +E + F L E+ L R D R LS R+ I G G G
Sbjct: 1 MSRHLETSLNNKEFVLNSLEKGL----RLDGRQLSDFRSLEIQFG---KEYGQVDVSFGH 53
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T ++A I E+ P + P +G SI + P+ GR ++ V+++ + +
Sbjct: 54 TRVMARITTEITKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRR 113
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189
S ++ + L ++ G+ W V ++ ++ DG L DAA ++ +AA + + P +++ ++
Sbjct: 114 SNALDTESLCIISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRPELTVVGEEV 173
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILA--DPTSEEESIMETLV 247
+ P E E+ PV L++ +P +T N LA D T EEE + +
Sbjct: 174 TVHPVE------ERVPV-----PLSILHMPICVTFSFFNNGELAIVDATLEEEDLCNGSM 222
Query: 248 TVVLDSSNQLVSLYKPGGAVL 268
T+ L+ + ++ +YK GG ++
Sbjct: 223 TITLNKNREVCQIYKAGGIII 243
>gi|383858184|ref|XP_003704582.1| PREDICTED: exosome complex component RRP45-like [Megachile
rotundata]
Length = 410
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 120/254 (47%), Gaps = 18/254 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + + + R D R+L AR I G S GS + +G T +A + ++ P
Sbjct: 13 FVNKAVEQGTRLDGRNLLEARPVKIYFG---SNWGSCMVLLGQTRAVAQVTCDIQQPKTS 69
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P+EG + I+ + + + G+ AE + ++++QL S I+L+ L ++ K
Sbjct: 70 RPNEGMLHINVELNAMVTQNFDAGKQAEVSVLISRQLEKCFKDSKCIDLESLCIIADKKV 129
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W + +DI ++ DG L D A ++ +AA S+ P V+ +I++ P EK+P+
Sbjct: 130 WNLRVDINIINHDGNLIDCASIATLAALSHFHRPDVTSTGEEIIIHP------FCEKDPL 183
Query: 207 NKEKRKLTLGGIPFSLTCI-LHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
LT+ P ++ I + DPT EE + +T+ ++S +L SL+
Sbjct: 184 -----PLTIYHYPVCVSFITFESGNTVMDPTYMEERVGVAQLTLGINSYRELCSLH---F 235
Query: 266 AVLAYTSAVQDCIA 279
L T +QD I+
Sbjct: 236 NYLTKTMTIQDVIS 249
>gi|224054532|ref|XP_002298307.1| predicted protein [Populus trichocarpa]
gi|222845565|gb|EEE83112.1| predicted protein [Populus trichocarpa]
Length = 382
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 137/276 (49%), Gaps = 18/276 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ E LA ++R D R+ R TI G A GS+ ++G T ++ + +++ P
Sbjct: 17 KFIETALASNLRIDGRNPLEYRKITIKFGRRV-AYGSSEVQLGQTHVMGFVTGQLVQPYQ 75
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ +EG + I P+ P PGRP E+A + + + + S ++ + L ++ GK
Sbjct: 76 DRRNEGMLLIFTEFSPMADPSFEPGRPGESAVELGRIVDRGLRESRAVDTESLCVLSGKL 135
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL--DDGK-IVMLPEEQKEENSE 202
W + +D++ LD G L DAA ++A+AA + P +L DDG+ + + P E E
Sbjct: 136 VWAIRIDLHILDNGGNLVDAANIAALAALLTFRRPECTLGGDDGQEVTVHPPE------E 189
Query: 203 KEPVNKEKRKLTLGGIPFSLTCIL--HKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
+EP+ L + +P ++T + ++ DPT EE++M +TV +++ + S+
Sbjct: 190 REPL-----PLIVHHLPIAITFAFLGSEGKMVVDPTHSEEAVMGGRMTVTVNAIGDICSI 244
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
K GG + S + C+ L + + + + A+
Sbjct: 245 QKAGGEGVP-QSVIMHCLQLASMSAESITKKINNAV 279
>gi|396479694|ref|XP_003840816.1| similar to exosome complex endonuclease 2/ribosomal RNA processing
protein [Leptosphaeria maculans JN3]
gi|312217389|emb|CBX97337.1| similar to exosome complex endonuclease 2/ribosomal RNA processing
protein [Leptosphaeria maculans JN3]
Length = 291
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 131/271 (48%), Gaps = 16/271 (5%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ ++ L E IR D R+ R ++ G G A ++G T ++A I ++V TP E
Sbjct: 14 FIKQALREQIRLDKRAFDAFRPVELTFG---DEYGVADVQLGKTRVIARISVDVTTPLPE 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+G I P+ SP GRP +A ++++ L I S ++ + L ++ G
Sbjct: 71 RKFDGIFQIVSEFSPMASPAFEIGRPTDAEVILSRILEKAIRRSNALDTESLCIIAGLKC 130
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
+ + D++ +D DG L DA+ ++ +AA + + P V ++ K +L E++P+
Sbjct: 131 FALRADVHVIDHDGGLIDASCIAVMAALQHFRRPDVVVEGEKATVL------SVRERDPI 184
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYI-LADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
L++ P +T ++ I L D EE + + V + ++ +L + K GG
Sbjct: 185 -----PLSILHQPLCVTFSYFEDEIFLVDANLAEERVRQGEVILTMNKHGELCQIAKYGG 239
Query: 266 AVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
A + A+ +C ++ Q+V EL ++++ +
Sbjct: 240 ATI-NPLALLNCTSIALQKVAELSALIQKRL 269
>gi|328866292|gb|EGG14677.1| hypothetical protein DFA_10935 [Dictyostelium fasciculatum]
Length = 282
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 119/241 (49%), Gaps = 9/241 (3%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
+ + ++ + ++R D R+ R + +G ++ A GS+ + T +L IK ++ P
Sbjct: 11 IYFIQQGVENNLRNDGRTRLDYRPFELDIGEISHAVGSSRIILADTHILVGIKADISAPD 70
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPV-VAKQLSDTISSSGMINLKELSLVGG 143
+P++G ++ P SP G+ A+ + +AKQL + S ++L L ++ G
Sbjct: 71 PLTPNKGSLTFSVDCCPSASPEYE-GKGADYINIELAKQLERVMKDSNSMDLGGLCIMPG 129
Query: 144 KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEK 203
K W +Y+D LD+ G LFDA + AA +N ++PT+ + G+ + E +
Sbjct: 130 KYCWNLYIDAIVLDSGGNLFDALSIGVRAALANTRLPTIRITQGEYSTVDFEVSD----- 184
Query: 204 EPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
+P + + L + G+P ++T N + D + EEE M+ +T+ ++ + + K
Sbjct: 185 DP--EAMQSLDIDGVPINVTLTTIGNQFVVDCSGEEEQCMDARMTIGVNKRGNICGIQKG 242
Query: 264 G 264
G
Sbjct: 243 G 243
>gi|347967668|ref|XP_312616.5| AGAP002348-PA [Anopheles gambiae str. PEST]
gi|333468355|gb|EAA07626.5| AGAP002348-PA [Anopheles gambiae str. PEST]
Length = 439
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 120/244 (49%), Gaps = 17/244 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ ++ + ESIR D R+L R IS G S G +G T LA I EV+ P
Sbjct: 13 FVQKAILESIRLDGRTLDEFRKLRISFG---SEWGLVHVILGETRALARITCEVVEPKAT 69
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P+EG + ++ + P+ +P GR ++ + + L + S ++L+ L LV +
Sbjct: 70 RPNEGMLFLNVELGPMAAPHFDGGRQSDECVQLNRILERALKDSNCVDLESLCLVSEEKV 129
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W + +D+ L+ +G D ++A+ A ++ + P +++D +++ E EK+P+
Sbjct: 130 WKLRVDVTVLNHEGNAIDCCSIAALTALAHFKRPDITVDGEDVIVHTIE------EKDPL 183
Query: 207 NKEKRKLTLGGIPFSLT-CILHKNYI-LADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
K+TL P ++ I ++ I +ADPT EE + E + L+S +L L+ G
Sbjct: 184 -----KVTLFHYPLCVSYAIFNQGKIAIADPTYLEERVAEARMVFGLNSYGELCGLH-LG 237
Query: 265 GAVL 268
G L
Sbjct: 238 GTTL 241
>gi|187607878|ref|NP_001120226.1| exosome component 9 [Xenopus (Silurana) tropicalis]
gi|169642591|gb|AAI60389.1| LOC100145275 protein [Xenopus (Silurana) tropicalis]
Length = 406
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 136/268 (50%), Gaps = 19/268 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+AE R D R RN I+ G + G + ++G T +L + E++TP + P EG
Sbjct: 18 IAERKRLDGRQTYDYRNIKITFG---TDYGCCIVELGKTRVLCQVSSEIVTPKMNRPTEG 74
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ D + P+ P GR +E + + + L + +S I+ + L + G+ W + +
Sbjct: 75 ILFFDLAISPMAFPGFEMGRNSELSVKLNRLLERCLRNSKCIDTESLCVAAGEKVWQIRV 134
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQKEENSEKEPVNKEK 210
D++ L+ +G + DAA ++A+A + + P VS+ ++ V PE E++PV
Sbjct: 135 DLHLLNHEGNIIDAASIAAIAGLCHFRRPDVSVQGEEVTVYTPE-------ERDPV---- 183
Query: 211 RKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
L++ +P ++ + Y+L DP+ EE +M+ L+ + ++ ++ ++ GG +L
Sbjct: 184 -PLSIHHMPICVSFAFFQQGIYLLVDPSEREEWVMDGLLVISMNKHREICTIQSSGGIML 242
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAI 296
++ C + +V E+ +++++A+
Sbjct: 243 LKEQVLR-CSKVAGVKVGEITELIQKAL 269
>gi|392559741|gb|EIW52925.1| ribosomal protein S5 domain 2-like protein [Trametes versicolor
FP-101664 SS1]
Length = 283
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 125/268 (46%), Gaps = 18/268 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L ES+R D R++ R ++ G G +G T +LA + +++ P E P EG
Sbjct: 19 LNESLRLDGRAMLEMRAPMLTFGPEL---GCVECSLGKTRVLAQVDGKMVKPLPERPLEG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++I + + S PGRP++ + + L + S ++ + L ++ G+ W + L
Sbjct: 76 IITIHSELSSMASNEFEPGRPSDQEVTITRMLDKVLRRSDAVDKESLCVLAGQRVWHIRL 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
I+ L G + D A L+ + A + + P V + ++ + SE+ PV
Sbjct: 136 TIHVLSDAGNMLDCACLAGIVALKHFRRPEVEVQGDEVTI------HHPSERAPV----- 184
Query: 212 KLTLGGIPFSLTCILHKNYI---LADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
L L PF T + L DP+ EE++ L++V L++ +L + K GG L
Sbjct: 185 PLALHHAPFCFTFAFFSDTTTPPLLDPSHLEETLSAGLLSVALNAQRELCVVQKAGGVPL 244
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAI 296
A + V + + Q+ +EL +++E A+
Sbjct: 245 A-PADVLAIMDVAVQKARELDKVVESAL 271
>gi|328861810|gb|EGG10912.1| hypothetical protein MELLADRAFT_33545 [Melampsora larici-populina
98AG31]
Length = 286
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 137/273 (50%), Gaps = 26/273 (9%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSAL-AKIGSTTMLAAIKMEVMTPSLESPDE 90
L E +R D R+ R ++ + S DG ++ +G T + A + + P + P E
Sbjct: 19 LREGLRLDGRATFEQRPISL----LISEDGDSVECSLGRTRVSAHVSATITRPRPDRPFE 74
Query: 91 GCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVY 150
G + + + P+ S + GR +E +++ L T+ SG+I+ + L ++ G+ W +
Sbjct: 75 GLLQVSAEINPLASFVYEIGRASEDEVHLSRLLDKTLVRSGVIDREALCILAGQKVWCIR 134
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK 210
+D++ L+ +G + D A ++A+AA N + P ++L +I + E+ P+
Sbjct: 135 VDLHFLNDEGNMLDCASVAAIAALQNFRRPDITLVGEEITV------HSFDERLPI---- 184
Query: 211 RKLTLGGIPFSLTCILHK---NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAV 267
LTL +P LT + +YIL DP+ E+ + +T+ L++ ++ + K GG
Sbjct: 185 -PLTLHHLPICLTFAFFELPASYILLDPSRLEQQLSTGTMTLTLNAQREICVINKSGG-- 241
Query: 268 LAYTSAVQDCIALTR---QRVKELHQILEEAIS 297
S V++ + + R +RV+E+ +++E IS
Sbjct: 242 --MPSDVEEIMRVVRIGSRRVQEVDALIKEQIS 272
>gi|52548653|gb|AAU82502.1| tRNA nucleotidyltransferase [uncultured archaeon GZfos18B6]
Length = 238
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 107/229 (46%), Gaps = 21/229 (9%)
Query: 47 RNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPL 106
R+ + + A+GS +IG T +L +K+E P ++P++G + + + P+ SP
Sbjct: 11 RDIIVERDLIKKAEGSTRVQIGDTVVLVGVKVEPGAPFPDTPNKGVLMTNAELVPLASPE 70
Query: 107 VRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAA 166
G P E + +A+ + I S I+L++L + G+ WM+++DI+ LD DG L DAA
Sbjct: 71 FESGPPGENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMIFIDIHTLDNDGNLVDAA 130
Query: 167 LLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL 226
L A+ + N+ IP EQ E L + P ++T +
Sbjct: 131 ALGAIMSLLNVTIPY-------------EQYGLTGED--------TLQIRDTPVAVTVVE 169
Query: 227 HKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQ 275
+L DP EES + +TV+ ++ + L K G + L V+
Sbjct: 170 IGGNLLVDPNVYEESAATSKLTVISNADGSISGLQKSGSSGLTEEKIVK 218
>gi|242003305|ref|XP_002422688.1| Exosome complex exonuclease RRP45, putative [Pediculus humanus
corporis]
gi|212505510|gb|EEB09950.1| Exosome complex exonuclease RRP45, putative [Pediculus humanus
corporis]
Length = 349
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 127/266 (47%), Gaps = 17/266 (6%)
Query: 33 AESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGC 92
+E R D R L R+ I G G +G + +++ +K E+ P P+EG
Sbjct: 19 SECKRLDGRKLEGFRDLKIHFGKDW---GLCYVSLGESKVVSQVKCEIQEPQAVRPNEGL 75
Query: 93 VSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLD 152
++ + + SP + PGR + + + + L + S I+L+ L +V W + +D
Sbjct: 76 FFMNVELSLMASPYIEPGRASNLSTHIQRLLDKCLYDSKAIDLESLCIVAEDKVWAIKID 135
Query: 153 IYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRK 212
++ L+ DG+L D A +SA+AA ++ + P V+ D +I + +E++P+
Sbjct: 136 VHVLNHDGSLVDCASISALAALAHFKRPDVTTDGEEIKV------HSTAERDPI-----P 184
Query: 213 LTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAY 270
LTL P ++ L N I ADPT EE + + +T +++ ++ L+ GG L
Sbjct: 185 LTLHHYPICVSFALLNNSENIFADPTEIEERVSDANLTFGINAYKEICCLH-LGGTALIK 243
Query: 271 TSAVQDCIALTRQRVKELHQILEEAI 296
+ C R KE+ +++ EAI
Sbjct: 244 PKLIMTCSLKAAARAKEVVELINEAI 269
>gi|71724847|gb|AAZ38885.1| 3' exoribonuclease [Xenopus laevis]
Length = 431
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 139/281 (49%), Gaps = 24/281 (8%)
Query: 24 PLRYFERH-----LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
PL ER+ + E R D R RN I+ G + G + ++G T +L +
Sbjct: 5 PLSNCERNFLLQAITEKKRLDGRQTYDYRNIKIAFG---TDYGCCIVELGKTRVLCQVSC 61
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E++TP + P EG + + + P+ P GR +E + + + L + +S I+ + L
Sbjct: 62 EIVTPKMSRPTEGILFFNLEISPMAFPGFEMGRQSELSVKLNRLLERCLRNSKCIDTESL 121
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQK 197
+ G+ W + +D++ L+ +G + DAA ++A+A + + P VS+ ++ V PE
Sbjct: 122 CVAAGEKVWQIRVDLHLLNHEGNIIDAASIAAIAGLCHFRRPDVSVQGEEVTVYTPE--- 178
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSN 255
E++PV L++ +P ++ + Y+L DP EE +M+ L+ + ++
Sbjct: 179 ----ERDPV-----PLSIHHMPICVSFAFFQQGIYLLVDPNEREERVMDGLLVIAMNKHR 229
Query: 256 QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
++ ++ GG +L ++ C + +V E+ +++++A+
Sbjct: 230 EICTIQSSGGIMLLKEQVLR-CSKVAGVKVGEITELIQKAL 269
>gi|147898885|ref|NP_001085439.1| exosome component 9 [Xenopus laevis]
gi|49114791|gb|AAH72749.1| SCL75 protein [Xenopus laevis]
Length = 431
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 139/281 (49%), Gaps = 24/281 (8%)
Query: 24 PLRYFERH-----LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
PL ER+ + E R D R RN I+ G + G + ++G T +L +
Sbjct: 5 PLSNCERNFLLQAITEKKRLDGRQTYDYRNIKIAFG---TDYGCCIVELGKTRVLCQVSC 61
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E++TP + P EG + + + P+ P GR +E + + + L + +S I+ + L
Sbjct: 62 EIVTPKMSRPTEGILFFNLEISPMAFPGFEMGRQSELSVKLNRLLERCLRNSKCIDTESL 121
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQK 197
+ G+ W + +D++ L+ +G + DAA ++A+A + + P VS+ ++ V PE
Sbjct: 122 CVAAGEKVWQIRVDLHLLNHEGNIIDAASIAAIAGLCHFRRPDVSVQGEEVTVYTPE--- 178
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSN 255
E++PV L++ +P ++ + Y+L DP EE +M+ L+ + ++
Sbjct: 179 ----ERDPV-----PLSIHHMPICVSFAFFQQGIYLLVDPNEREERVMDGLLVIAMNKHR 229
Query: 256 QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
++ ++ GG +L ++ C + +V E+ +++++A+
Sbjct: 230 EICTIQSSGGIMLLKEQVLR-CSKVAGVKVGEITELIQKAL 269
>gi|356461011|ref|NP_001239083.1| exosome component 7 [Gallus gallus]
Length = 291
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 129/279 (46%), Gaps = 26/279 (9%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIIHGVQEDLRVDGRGCEDYRCAEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAEA-APVVAKQLSDTISSSGMINLKELSLVG 142
PDEG ++F + CS P GR E +A L SS G ++LK L +
Sbjct: 73 KPDEG--YLEFFVD--CSANATPEFEGRGGEELGTEIASTLYRIFSSEGSVDLKSLCINP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
G+ W++Y+D+ L+ G LFDA ++ AA N +IP K+ +L +E+ + E
Sbjct: 129 GEHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------KVRVLEDEEGSKEIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLTCILHKNYI----LADPTSEEESIMETLVTVVLDSSNQLV 258
+ +L + +P CI+ N I + D T +EE+ + + + S L
Sbjct: 182 LSDDPYDCIRLNVEDVP----CIVTLNKIGYRHVVDATLQEEACSLASLLIAITSKGALT 237
Query: 259 SLYKPGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAI 296
+ K G L S + + T ++V K LH L++ +
Sbjct: 238 CMKKIGKGSLDPESIFE--MMETGKKVGKSLHASLQKVL 274
>gi|189206730|ref|XP_001939699.1| 3' exoribonuclease [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187975792|gb|EDU42418.1| 3' exoribonuclease [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 291
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 130/271 (47%), Gaps = 16/271 (5%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ ++ L E IR D R+ R ++ G G A ++G T ++A I ++V TP E
Sbjct: 14 FIKQALQEQIRIDRRAFDAFRPLELTFG---DEYGVADVQLGKTRVIARISVDVTTPLPE 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+G I P+ SP GRP +A ++++ L I S ++ + L ++ G
Sbjct: 71 RKFDGIFQIVTEFSPMASPAFEVGRPTDAEVILSRILEKAIRRSNALDTESLCIIAGSKC 130
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
+ + D++ +D DG L DA+ ++ +AA + + P V ++ K +L ++EP+
Sbjct: 131 FALRADVHIIDHDGGLIDASCIAVMAALQHFRRPDVVVEGEKATILS------VRDREPI 184
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYI-LADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
L++ P +T ++ I L D EE + + V + ++ +L + K GG
Sbjct: 185 -----PLSILHQPLCVTFSYFEDEIFLIDANLAEEQVRQGEVILTMNKHGELCQIAKYGG 239
Query: 266 AVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
A + A+ +C + ++VKE+ +++ +
Sbjct: 240 ATI-NPLALLNCTNVALEKVKEMSAFIQKRL 269
>gi|400601572|gb|EJP69215.1| 3' exoribonuclease family protein [Beauveria bassiana ARSEF 2860]
Length = 297
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 23/247 (9%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + LAE +R D R+ + R+ ++ G G A ++G T +LA + EV P +
Sbjct: 14 FVTQALAEGLRLDNRTFEQYRSLKLTFG---DEYGIAEVQLGKTKVLAKVSAEVTVPFSD 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P +G +I + P+ +P RP E ++++ L TI SG ++ + L L+ G+
Sbjct: 71 RPFDGVFTIASELSPMAAPSFEVNRPTETEVILSRLLEKTIRRSGALDTESLCLIAGQKC 130
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQKEENSEKEP 205
W V +D++ L +G L D + L+ VAA + + P +++ G + V P +E+ P
Sbjct: 131 WSVRVDLHVLAHEGNLLDTSCLAVVAALRHFRKPETTMEGGVLTVYTP-------AERVP 183
Query: 206 VNKEKRKLTLGGIPFSLTCIL-------HKNYILADPTSEEESIMETLVTVVLDSSNQLV 258
V L+ PF +T + +L D T EE + + T ++ ++
Sbjct: 184 V-----PLSWLHSPFCVTFSFFGGNGDEEEEKVLLDTTWLEEQLRTSSCTFSMNRHGEIC 238
Query: 259 SLYKPGG 265
+ K GG
Sbjct: 239 QISKLGG 245
>gi|391334104|ref|XP_003741448.1| PREDICTED: exosome complex component RRP45-like [Metaseiulus
occidentalis]
Length = 294
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 140/295 (47%), Gaps = 29/295 (9%)
Query: 12 SEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTT 71
S++E + RR+ L ++ R D R+ R I A S GS + +G T
Sbjct: 8 SDVETNFTRRVV--------LEQTTRADDRTHREPRKLKI---AYLSEPGSCIVSLGDTK 56
Query: 72 MLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSG 131
+LA + P P+EG ++I F + P+ + L + R E + + L I S
Sbjct: 57 VLAQCSAHICEPKPTRPNEGRLAIQFDVSPVAASL-QDSRTMEYRVGIGRLLDRVIRDSE 115
Query: 132 MINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVM 191
++L+ L LV G+ AW V +D+ ++ G + + A +++VAA ++ + P V++ ++ +
Sbjct: 116 CVDLENLCLVAGERAWEVRVDVVLMNLGGNVAECASIASVAALAHFKRPEVTIVGKEMTV 175
Query: 192 LPEEQKEENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVV 250
P +E EPV L + P+ L+ IL DP+ EEE+ + ++ V
Sbjct: 176 HP------VTEHEPV-----PLHIYHYPYCLSFAFFETETILVDPSFEEEACCDGILIVG 224
Query: 251 LDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI---SGMEID 302
++S ++ +L + G + A ++ CI L R K + ++ + SG +ID
Sbjct: 225 VNSHEEVCALQQRGSVLTA--DQIELCIKLACSRAKLITDTIKRQLASKSGTDID 277
>gi|389632461|ref|XP_003713883.1| exosome complex exonuclease RRP45 [Magnaporthe oryzae 70-15]
gi|351646216|gb|EHA54076.1| exosome complex exonuclease RRP45 [Magnaporthe oryzae 70-15]
Length = 293
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 126/269 (46%), Gaps = 18/269 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +++R D R + R +S G G + G T ++A EV P + P +G
Sbjct: 19 LQQNLRLDGRDIDEYRPIKLSFG---DEYGLVEVEFGKTRIVAKASAEVTIPYTDRPFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + P+ SP RP E ++++ L TI S ++ + L LV G+ W + +
Sbjct: 76 IFNIVTELSPMASPAFEVNRPTETEVLLSRLLEKTIRRSNALDTESLCLVAGQKCWSIRV 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ DG L DA+ L+ VAA + + P S+ +G++V + +E+EPV
Sbjct: 136 DVHAESHDGNLIDASCLAVVAALRHFRKPDTSI-EGEVVTVYTP-----AEREPV----- 184
Query: 212 KLTLGGIPFSLTCILHKNY---ILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
L+ PF +T + + D EE + + T+ L+ ++ + K GG +
Sbjct: 185 PLSWLHSPFCVTFSFFGDLGDMFVVDANWLEEQVRVSSCTISLNRHGEICQIAKLGGTAV 244
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAIS 297
+ +Q C A+ + K+ ++L++ ++
Sbjct: 245 EAVTLLQ-CNAVALVKAKDFSKLLDDKLA 272
>gi|409075918|gb|EKM76293.1| hypothetical protein AGABI1DRAFT_122693 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 283
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 125/270 (46%), Gaps = 19/270 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L ES+R D RSL + R G G K+G T ++A + +++ P+ E P EG
Sbjct: 18 LKESLRLDGRSLLQQRKLEFRFGPEL---GYVECKLGKTMVIAQVDAKMVKPTPERPFEG 74
Query: 92 CVSIDFHMPPICSPLVRPGRPA-EAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVY 150
+SI + P+ S GR A E ++ + L + S I+ + L ++ G W +
Sbjct: 75 SISIHSEISPMASSEYEAGRAASEEEVMINRMLDKVLRRSDAIDKESLCILAGHRVWHLR 134
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK 210
+ + L G + D A L+ + A + + P V + ++++ P +E+ PV
Sbjct: 135 ITFHFLSDAGNMLDCACLAGIVALRHFRRPEVEVIGDEVIVHP------PTERAPV---- 184
Query: 211 RKLTLGGIPFSLTCILHKNYILA---DPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAV 267
L + PF T + + DP+ E+ + L+++ L++ +L L K GG
Sbjct: 185 -PLAIHHTPFCFTFAFFPDVTTSPVLDPSQLEQRLSAGLLSIALNAQKELCVLQKLGGVP 243
Query: 268 LAYTSAVQDCIALTRQRVKELHQILEEAIS 297
L + ++ + + Q+ KELH+ +E ++
Sbjct: 244 LPHEEIIR-LVDTSVQKAKELHEFVETRLT 272
>gi|91080613|ref|XP_974147.1| PREDICTED: similar to AGAP002348-PA [Tribolium castaneum]
gi|270005510|gb|EFA01958.1| hypothetical protein TcasGA2_TC007574 [Tribolium castaneum]
Length = 389
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 117/246 (47%), Gaps = 16/246 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ + L+E R D RS R + G GS +G+T +LA E+ P
Sbjct: 15 KFLMKCLSEWRRLDGRSFDEFRPLELKFGKQW---GSCYVSLGNTKVLAQTSCEIQQPKS 71
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
P EG ++I+ + P+ +P GR +E + + + L + S ++L+ L + +
Sbjct: 72 SRPSEGILNINIELNPLAAPHFEAGRQSELSVQLNRLLEKCVKDSKAVDLESLCIKTNEK 131
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +DI L+ +G + D A ++ +A+ ++ + P V+ D + ++ +Q ++P
Sbjct: 132 VWALKVDINVLNHEGNILDCASIAMLASLTHFRRPDVTCDGEEFIIHSYQQ------RDP 185
Query: 206 VNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
+ + P +T + YILADP+ EE + ++T+ L+ +L +L+
Sbjct: 186 I-----PTVIHHYPVCITYAIFNGGEYILADPSLLEEGSADAMLTIGLNGFKELCALHLG 240
Query: 264 GGAVLA 269
G A LA
Sbjct: 241 GKAELA 246
>gi|320033639|gb|EFW15586.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Coccidioides posadasii str. Silveira]
Length = 265
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 118/258 (45%), Gaps = 20/258 (7%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++ + E+ A R F L L ++R D R+L + R ++ G G ++G
Sbjct: 1 MARDTELSANERSFILEA----LHNNVRLDGRALDQFRPLNLTFG---DEYGHVKVQLGR 53
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T+++ I EV P E +G ++ + + P GR ++ +++ L +
Sbjct: 54 TSVIVRISAEVTAPRPERDSDGIFTVSIELNDMALPGFETGRQSDLETQLSRTLDKIVRR 113
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189
S ++ + L + G + W V D++ +DADG L D L+ +A + +IP ++ DGK+
Sbjct: 114 SNALDTESLCIAKGLSCWNVRADVHIVDADGGLVDICCLAIMAGLLHFRIPESTVSDGKV 173
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLV 247
+ E EK PV L L +P S+T L+ L D TS EE++ E V
Sbjct: 174 TVYSPE------EKVPV-----PLNLTKVPLSITFNLYDEGKITLMDATSSEEAVSEGAV 222
Query: 248 TVVLDSSNQLVSLYKPGG 265
+ LD + ++ K G
Sbjct: 223 IIALDKTGEIALYTKAEG 240
>gi|440637012|gb|ELR06931.1| hypothetical protein GMDG_02301 [Geomyces destructans 20631-21]
Length = 252
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 119/247 (48%), Gaps = 20/247 (8%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ + L +++R D R AR+ I+ G A GS ++G T +LA I + PS
Sbjct: 13 QFILQALEDNLRLDGRGFDDARDVEITFG---DAYGSVDVQMGKTRVLATISCSLSPPSP 69
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
P +G ++ P+ +P V P RP+ ++A+ L T+ S ++ + L L+ GK+
Sbjct: 70 PRPFDGIFTLTTEFSPMATPTVDPSRPSPPETLLARLLDKTLRRSAALDTESLCLLAGKS 129
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + D++ L G L DA ++A+A + + P VS++ K+ + E E+ P
Sbjct: 130 VWAICCDLHILSHGGGLLDACCVAALAGLLHFRRPEVSVEGEKVTIYSAE------ERAP 183
Query: 206 VNKEKRKLTLGGIPFSLTCIL------HKNYILADPTSEEESIMETLVTVVLDSSNQLVS 259
V L+L +PF +T + + +L D EE + E VTV ++ ++
Sbjct: 184 V-----PLSLLHLPFCVTFSIFGIRSGEEEAVLLDADRAEEGVREGAVTVGVNRHGEVCQ 238
Query: 260 LYKPGGA 266
+ K GG
Sbjct: 239 IAKLGGG 245
>gi|67609743|ref|XP_667059.1| polymyositis/scleroderma autoantigen 1 [Cryptosporidium hominis
TU502]
gi|54658150|gb|EAL36827.1| polymyositis/scleroderma autoantigen 1 [Cryptosporidium hominis]
Length = 408
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 128/278 (46%), Gaps = 24/278 (8%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSI 95
+R D R+++ RN I++ G IG T +L+ +K E++ PS E EG +S
Sbjct: 13 LRLDGRTMNEYRNVKINLNKNY---GEVEVNIGRTHVLSVVKSELVAPSQERSSEGFISF 69
Query: 96 DFHMPPI----CSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ P+ S R R + A + T+ +G I+ + L ++ G W V
Sbjct: 70 TVDIGPLSINPTSHAFRHNRTTLGTEI-ANYIERTLKETGAIDTEILCILSGVCVWSVKC 128
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
+I+ L DG LFDA L++ ++ + + + +D L + + E E++ E
Sbjct: 129 EIHVLFDDGNLFDACLMATLSGLKHYRYNEIDVDS----FLKKSKCEGLEERDYQRLENT 184
Query: 212 KLTLGGIPFSLTCI---LHKNYI--------LADPTSEEESIMETLVTVVLDSSNQLVSL 260
L IPF++ + YI + DP S+EESI +T++ + ++ ++ +
Sbjct: 185 IRKLEMIPFNVHHFPLSISIGYINGKEGLSYIVDPNSDEESISDTIIHISINDKQEVCGI 244
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISG 298
K GGA L+ + + I + ++LHQ ++A G
Sbjct: 245 SKFGGAKLSL-NQINFAIQIATIHSEKLHQEFKKAFDG 281
>gi|159490978|ref|XP_001703450.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
gi|158280374|gb|EDP06132.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
Length = 296
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 142/296 (47%), Gaps = 21/296 (7%)
Query: 12 SEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTT 71
S+ + D+F + + LAE +R D R + R + D S GST
Sbjct: 2 SQRDADSFISKNEREFILKALAEDVRLDGRRPNDMRKPKFQF---SLDDRSCTVAQGSTR 58
Query: 72 MLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSG 131
++A + + P + P EG + + P+ SP PG+P E A VA+ + + SG
Sbjct: 59 VMAVVSAALEAPYPDRPSEGPLRFNVEFSPMASPAFEPGKPGEDAIQVARLIERGLRQSG 118
Query: 132 MINLKELSLVGGKA-AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL---DDG 187
++ + L + G+ W + +D + LD G L D L+A+AA + P V +
Sbjct: 119 AVDQEALWVGAGRVRVWALRVDCHVLDHGGNLLDCCFLAALAALMAFRKPEVEVGGESGS 178
Query: 188 KIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMET 245
+I++ P E +EPV LT+ +P ++T L + + ++ADPT +EE+
Sbjct: 179 EIIVHPPEV------REPV-----PLTIHHLPVAVTFALFQAGDMLVADPTWKEEAAAAG 227
Query: 246 LVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEI 301
TVV++ + ++ ++K G L+ ++ C+ L ++ +E+ L++A+ G E+
Sbjct: 228 SCTVVMNPAQEVCCVHKADGIGLSPEQFMR-CVRLAGRQAEEVVAGLKKALEGHEV 282
>gi|424819697|ref|ZP_18244764.1| Putative exosome complex RNA-binding protein [Candidatus
Parvarchaeum acidophilus ARMAN-5_'5-way FS']
gi|326422493|gb|EGD71890.1| Putative exosome complex RNA-binding protein [Candidatus
Parvarchaeum acidophilus ARMAN-5_'5-way FS']
Length = 253
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 129/269 (47%), Gaps = 27/269 (10%)
Query: 30 RHLAE-SIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESP 88
R LA+ +R D R R I + +DGSA ++G+T ++A +K+ TP + P
Sbjct: 10 RSLAQKGLRLDQREAFEGRRMAIKDNVINHSDGSAYVELGNTKVIAGVKVLNGTPFPDRP 69
Query: 89 DEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWM 148
+G + ++F + + S PG ++ V + I S +I+L +L + GK
Sbjct: 70 ADGALIVNFELSELTSNY--PGDRINSSIEVGRVTDRGIRESNLIDLSKLCVEEGKTVLF 127
Query: 149 VYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNK 208
VY+DI C++ +G LFDA ++A+ A N + ++ +GK + P+++
Sbjct: 128 VYVDIVCINNEGNLFDAGNIAALRAILNTRY-SIEGKEGKFSL-------------PIDR 173
Query: 209 EKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
K + S T I DP++EEE++ +T +++ + S+++ SL K GG
Sbjct: 174 TK-------LAISHTFTKINGTIFFDPSAEEENVEDTKLSIGI--SDKINSLQK-GGDGF 223
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAIS 297
V CI + +E +IL + IS
Sbjct: 224 FTAEEVDKCIEKAIELREERFKILMDGIS 252
>gi|196004466|ref|XP_002112100.1| hypothetical protein TRIADDRAFT_55798 [Trichoplax adhaerens]
gi|190585999|gb|EDV26067.1| hypothetical protein TRIADDRAFT_55798 [Trichoplax adhaerens]
Length = 288
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 120/264 (45%), Gaps = 16/264 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+ + R D R R I G V++ +GSA + T +L IK E+ P E + G
Sbjct: 18 VTQDCRADGRRCIDFRRFQIETGIVSNTNGSARLRQYGTDVLVGIKAEIGQPKQERSNTG 77
Query: 92 CVSIDFHMPPICSPLVRP---GRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWM 148
++F++ CS G + + K L S +++LK L+++ G+ W+
Sbjct: 78 --HLEFYVD--CSSYNTTEIDGHIGDFTTQLTKSLERIYDSENVLDLKSLTIIAGEQVWV 133
Query: 149 VYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNK 208
+Y+D L+ G L D ++ AA N +IP VS++D + V+ E + N EK
Sbjct: 134 LYIDAVVLECCGNLLDCISIAVKAALYNTRIPGVSVNDEEGVLELEISDDPNDEK----- 188
Query: 209 EKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
KL++ +P ++C + + D T EEE + + ++ N + SL K G L
Sbjct: 189 ---KLSIDKVPVIVSCNKIGHRYVVDATQEEECCSSGRLLIAVNDRNNICSLQKSGTGSL 245
Query: 269 AYTSAVQDCIALTRQRVKELHQIL 292
S + + I RQ L+Q L
Sbjct: 246 D-PSTIFEMIETARQAAVPLNQEL 268
>gi|332027278|gb|EGI67362.1| Exosome complex exonuclease RRP45 [Acromyrmex echinatior]
Length = 390
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 120/255 (47%), Gaps = 20/255 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + + E R D R L R I +S G + +G T +A + ++ P
Sbjct: 13 FINKCIEEETRLDGRKLLEPRLAKIYF---SSNWGCCMVSLGHTKAVAQVSCDIQQPKAS 69
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P+EG + I+ + P+ + GR +EAA ++ +QL S ++L+ L +V K
Sbjct: 70 RPNEGMIRINVELAPLAAQHFEGGRQSEAAILINRQLEKCFKDSKCVDLESLCIVADKKV 129
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W + +DI ++ DG L D A ++ +AA + P V+ +I++ P SEK+ +
Sbjct: 130 WNLRIDINIINHDGNLVDCASIATLAALMHFHRPDVTSTGEEIIIHPA------SEKDFL 183
Query: 207 NKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
LTL P ++ I K N I+ DPT EE + +T+ ++S +L SL+
Sbjct: 184 -----PLTLFHYPVCISFITFKSGNTIM-DPTYIEEKVGVAELTLGVNSYRELCSLH--- 234
Query: 265 GAVLAYTSAVQDCIA 279
L T V+D I+
Sbjct: 235 FDYLTKTMTVKDVIS 249
>gi|322709290|gb|EFZ00866.1| 3' exoribonuclease [Metarhizium anisopliae ARSEF 23]
Length = 288
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 122/274 (44%), Gaps = 25/274 (9%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + L E +R D R + R ++ G G A AKI +A + EV P +
Sbjct: 14 FVAKALDEGLRLDNRKFEQFRPLELTFG---DEFGVADAKI-----VARVSAEVTVPFTD 65
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P +G +I + P+ +P RP E ++++ L TI SG ++ + L LV G+
Sbjct: 66 RPFDGIFTISSELSPMAAPSFEVNRPTEQEVLLSRILEKTIRRSGALDTESLCLVAGQKC 125
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQKEENSEKEP 205
W V D++ L DG L D A + VAA + + P ++D + V P +E+EP
Sbjct: 126 WSVRADVHVLSHDGNLLDVACFAVVAALRHFRKPETTMDGETLTVYTP-------AEREP 178
Query: 206 VNKEKRKLTLGGIPFSLTCILHKN---YILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
V L+ PF +T + +L D T EE + T T L+ ++ + K
Sbjct: 179 V-----ALSWLHSPFCVTFSFFGHDGETVLMDTTWLEEQLRVTSCTFSLNKHGEICQVSK 233
Query: 263 PGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GGA + V+ C L RVK +++ +
Sbjct: 234 LGGADVDAPLFVR-CAQLALDRVKVFTDLVDRKL 266
>gi|161527941|ref|YP_001581767.1| exosome complex RNA-binding protein Rrp42 [Nitrosopumilus maritimus
SCM1]
gi|160339242|gb|ABX12329.1| 3' exoribonuclease [Nitrosopumilus maritimus SCM1]
Length = 272
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 129/289 (44%), Gaps = 19/289 (6%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++S +D +R L E + R D R+L +R +I A+ A+GSA ++G
Sbjct: 1 MTSHTVIDELKRNQILELLE----QGKRVDGRALDESREVSIETNAIPKANGSARVRLGD 56
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T ++ +K++ P ++ D+G + P+ P V G P +A+ + I
Sbjct: 57 TEVVCGVKIQPDRPFPDTGDKGLFICTAELLPLSHPTVETGPPGPEVIELARVVDRGIRE 116
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189
S MI++ +L + K+ V+ D +D DG LFDA +A AA + + P + D
Sbjct: 117 SHMIDVSQLVIEKDKSVIGVFADNVVVDYDGNLFDACSYAATAALLSSKSPKWNWVDDAP 176
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTV 249
+ V E+ + + IP S+T N+I+ DP +E + M+ +T+
Sbjct: 177 AL--------------VEGEEVDVPITTIPVSVTMGKIGNHIIVDPNGDEWASMDARITI 222
Query: 250 VLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISG 298
DS + +L K G VQ C ++ + ++ + L+ A G
Sbjct: 223 TSDSDGNICALQKGGDDGFTQDEIVQ-CGEISVRVGAKIREKLKAAQQG 270
>gi|302786484|ref|XP_002975013.1| hypothetical protein SELMODRAFT_102800 [Selaginella moellendorffii]
gi|300157172|gb|EFJ23798.1| hypothetical protein SELMODRAFT_102800 [Selaginella moellendorffii]
Length = 288
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 128/286 (44%), Gaps = 21/286 (7%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
L Y E + +R D R RN +I +G + A+GSA ++G T ++ ++K E+ +P
Sbjct: 9 LDYIEGGVKHDLRSDGRGRYHFRNLSIQVGIIPQANGSARVRLGGTDVIVSVKAELGSPR 68
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI---------SSSGMINL 135
P+ G + + CS P + +LS + + I+L
Sbjct: 69 SGRPNYGSIEVMVE----CSATAGPEFEGRGGEDLNMELSRALQRCFVGGPSGAGAAIDL 124
Query: 136 KELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEE 195
L +V K W +++D +++DG L DA LS AA SN IP+V K+
Sbjct: 125 STLGIVASKFCWELFVDCLVVNSDGNLLDA--LSIGAALSNTGIPSV-----KVTGNTAS 177
Query: 196 QKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSN 255
+ + + E E +L +P +T + + D T EEE M + V+V ++S
Sbjct: 178 EDDADLEVGDNPDEFARLDASKVPLIITLTKIGRHYIVDATPEEEMGMSSAVSVAVNSKG 237
Query: 256 QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEI 301
++ L K G L S V D I++ + ++L +++ I+ E+
Sbjct: 238 LILGLTKRGDGGLD-PSVVTDMISVAKHIARDLIVLVDTEIAAAEL 282
>gi|452847222|gb|EME49154.1| hypothetical protein DOTSEDRAFT_142863 [Dothistroma septosporum
NZE10]
Length = 338
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 151/347 (43%), Gaps = 68/347 (19%)
Query: 3 LPNASEDLSS-EMEVDAFRRLFPLRYFERHLAES---IRPDARSLSRARNTTISMGAVAS 58
+ NASE ++ + F +L P + HL + +RP+ R L +R ++ G++
Sbjct: 1 MSNASESAAALTFARETFAKLTPGPFLLAHLKQEPRPVRPNGRQLFESRQPAVNTGSLTH 60
Query: 59 ADGSALAKIGSTTMLAAIKMEVMTPS------LESPDE-------GCVSIDFHMPPICSP 105
++GSA+ ++G T ++ ++ E++ S E P+E G + + + CSP
Sbjct: 61 SNGSAVVRVGDTAIVCGVRGEILLASDIPHAPHEDPEEQDLIEELGLLVPNVELSTGCSP 120
Query: 106 LVRPGRPAEAAPVVAKQLSDTISS---------------------SGMINLKELSLVGGK 144
PG P +A+ LS + S +G + + S V K
Sbjct: 121 AHLPGNPPS---TLAQSLSYRVCSLLQDSRCIDASSLRIEYTEPDTGDDDAADESRVVIK 177
Query: 145 AAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKE 204
A W +Y+D+ CL DG FDAA L+ AA + +P D Q E
Sbjct: 178 AFWTLYIDVLCLALDGNAFDAAWLAITAALRDTTLPKAWWD----------QDREGVLCS 227
Query: 205 PVNKEKRKLTLGGIP-------FSLTCILHK-----NYILADPTSEEESIMETLVTVVLD 252
P+ + LTL IP F+ L + +++L DP + EE + + ++T+ +
Sbjct: 228 PLLSDASALTLNEIPSVSTFAVFTTASPLQRPENAQSWVLVDPDAFEEDLCDEMLTIAVR 287
Query: 253 SSNQ----LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEA 295
+ L+ + K GG+ + T A++DC+ +R+ + L+ +
Sbjct: 288 KTGSGGTTLLKVEKSGGSFIG-TLAIRDCVEAASRRLADTELALKNS 333
>gi|327310388|ref|YP_004337285.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus uzoniensis
768-20]
gi|326946867|gb|AEA11973.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus uzoniensis
768-20]
Length = 273
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 124/239 (51%), Gaps = 16/239 (6%)
Query: 28 FERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLES 87
R ++ +R D R+ + R +I+ V +ADGSA A +G T ++A +K+ + P ++
Sbjct: 20 IRRLISSGVRIDGRTPDQLREVSITTNVVNTADGSAEALLGKTRVVAGVKVGLGQPFPDA 79
Query: 88 PDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAW 147
PDEG + ++ + P SP G P E A +A+ + I SG ++ K+L++ K +
Sbjct: 80 PDEGVLIVNAEILPHASPYSEIGPPDETAIELARVVDRGIRHSGFVDFKKLAIDQNK-VY 138
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEK-EPV 206
++++D+Y L+ DG L DAA L+A+AA + MLP K+E K +
Sbjct: 139 VLWVDLYVLNDDGNLVDAANLAALAALRS-------------TMLPSAVKDETGVKLDRN 185
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
NK L P +++ N ++ DP EEE ++ +TV + + + +VS+ K G
Sbjct: 186 NKTALPSDLSKAPIAVSIGKIDNRLIVDPNFEEELSLDGRITVTI-AQDSIVSIQKTMG 243
>gi|290998465|ref|XP_002681801.1| predicted protein [Naegleria gruberi]
gi|284095426|gb|EFC49057.1| predicted protein [Naegleria gruberi]
Length = 289
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 125/253 (49%), Gaps = 21/253 (8%)
Query: 22 LFPLRYFERHL-----AESIRPDARSLSRARNTTISMGAVASADGSALAKIGS-TTMLAA 75
+ L E+H +++R D R+ R+ ++ G V+ +GSA K+ + T +L
Sbjct: 1 MLKLSQTEKHFIIDGVEQNMRNDGRARLDYRDFSLETGIVSQTNGSARVKLANHTDVLVG 60
Query: 76 IKMEVMTPSLESPDEGCVSIDFHMPPICSPLVR---PGRPAEAAPV-VAKQLSDTISSSG 131
+K+E+ + PD+G ++ H+ CSP GR AE + L + + +S
Sbjct: 61 VKVEIGEVDQDFPDQG--RLEVHVE--CSPSANNEFEGRGAEEINAELISTLRNQLKNSF 116
Query: 132 MINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVM 191
++ +L +V GK W++Y+D LD+ G LFDA ++ AA N +IP + + + +
Sbjct: 117 AVDWTKLCIVKGKQCWILYVDCIVLDSAGNLFDALAIATRAALYNTRIPKIEV----MEI 172
Query: 192 LPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVL 251
P E + E S+ +P E ++ IP S+T + + DP+ EEE + +TV +
Sbjct: 173 SPTETEFEVSD-DP--HEYSRIDCSNIPISVTLGKIGSKFIVDPSLEEEECISNRMTVSV 229
Query: 252 DSSNQLVSLYKPG 264
+ + S+ K G
Sbjct: 230 NKKGHICSIKKSG 242
>gi|156383487|ref|XP_001632865.1| predicted protein [Nematostella vectensis]
gi|156219927|gb|EDO40802.1| predicted protein [Nematostella vectensis]
Length = 268
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 123/263 (46%), Gaps = 17/263 (6%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R + R I A + G ++G T +LA + E+ P +G + I+
Sbjct: 1 RLDGRGIYDYRKLRI---AFSVERGHCEVQLGKTRVLAQVSCEITKPKTNRQTDGHIYIN 57
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ SP GR +E + + + S I+ + L +V G+ W V +DI L
Sbjct: 58 VELSPMASPAFEAGRMSELGVELNRFVERFYIESRAIDTESLCIVAGEKVWSVRVDIQVL 117
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G + D A +SA+ A S+ + P VS+ ++ + E ++++PV L++
Sbjct: 118 DHSGNILDCACISAITALSHFRRPDVSVSGEEVTIHSE------ADRDPV-----PLSIL 166
Query: 217 GIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAV 274
+P +T N +L DP +EE++M+ + + L+ ++ GG L T +
Sbjct: 167 HMPICVTFAFFDNGELLLVDPNDKEEAVMDGHMMMALNIHREVCGAVMGGGVSLE-TDQI 225
Query: 275 QDCIALTRQRVKELHQILEEAIS 297
C + +V E+ +++E+A++
Sbjct: 226 IRCSNIAVVKVAEITELIEKALA 248
>gi|346971187|gb|EGY14639.1| exosome complex exonuclease RRP45 [Verticillium dahliae VdLs.17]
Length = 305
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 128/288 (44%), Gaps = 37/288 (12%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + L E +R D R + RN IS G G +G T ++ I EV P +
Sbjct: 14 FILKALHEGVRLDGRPFDQYRNIDISFG---DEYGVVDVSLGKTRVIVRISAEVTVPHAD 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P +G + + P+ SP PG+P + ++++ L TI SG ++++ L LV G
Sbjct: 71 RPFDGIFQLATELSPMASPHFEPGKPTDTEMLLSRLLEKTIRRSGALDMESLCLVAGAKV 130
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W V D++ + DG + DAA L+AVAA + + P +D + + +E+ PV
Sbjct: 131 WSVRADVHVVSHDGNIVDAACLAAVAALRHFRKPDAQVDGEDLTVFTP------AERAPV 184
Query: 207 NKEKRKLTLGGI--PFSLTCILHKNY---------------ILADPTSEEESIMETLVTV 249
LG + PF C+ ++ L DP EE + T+
Sbjct: 185 -------PLGWLHSPF---CVTFAHFGARDGGPDGDGRDGVTLLDPDWREEQLRVASCTI 234
Query: 250 VLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
L+ ++ K GG + T+ +Q C AL ++V EL +++ ++
Sbjct: 235 SLNKHGEVCQASKLGGDAVEATTLLQ-CAALAARKVGELSDLVDRTLA 281
>gi|330935982|ref|XP_003305202.1| hypothetical protein PTT_17982 [Pyrenophora teres f. teres 0-1]
gi|311317878|gb|EFQ86700.1| hypothetical protein PTT_17982 [Pyrenophora teres f. teres 0-1]
Length = 291
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 130/271 (47%), Gaps = 16/271 (5%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ ++ L E IR D R+ R ++ G G A ++G T ++A I ++V TP E
Sbjct: 14 FIKQALQEQIRIDRRAFDAFRPLELTFG---DEYGVADVQLGKTRVIARISVDVTTPLPE 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+G I P+ SP GRP ++ ++++ L I S ++ + L ++ G
Sbjct: 71 RKFDGIFQIVTEFSPMASPAFEVGRPTDSEVILSRILEKAIRRSNALDTESLCIIAGSKC 130
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
+ + D++ +D DG L DA+ ++ +AA + + P V ++ K +L ++EP+
Sbjct: 131 FALRADVHIIDHDGGLIDASCIAVMAALQHFRRPDVVVEGEKATILS------VRDREPI 184
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYI-LADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
L++ P +T ++ I L D EE + + + + ++ +L + K GG
Sbjct: 185 -----PLSILHQPLCVTFSYFEDEIFLIDANLAEEQVRQGEIILTMNKHGELCQMAKYGG 239
Query: 266 AVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
A + A+ +C + ++VKE+ +++ +
Sbjct: 240 ATI-NPLALLNCTNVALEKVKEMSAFIQKRL 269
>gi|402086889|gb|EJT81787.1| exosome complex exonuclease RRP45 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 302
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 126/279 (45%), Gaps = 29/279 (10%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +++R D R + + R ++ G G ++G T +LA EV P + P +G
Sbjct: 19 LQQNLRLDGREVDQYRPIKLTFG---DEYGVVDVELGKTRILAKTSAEVTVPYADRPFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + P+ SP RP EA ++++ L T+ SG ++ + L L+ G W V +
Sbjct: 76 IFNIVTELSPMASPAFEVNRPTEAEVLLSRLLEKTVRRSGALDTESLCLIAGLKCWSVRV 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD-DGKIVMLPEEQKEENSEKEPVNKEK 210
D++ L DG L DA+ L+ V A + + P S++ + V P +E+EPV
Sbjct: 136 DLHVLSHDGNLVDASCLAVVTALRHFRKPDTSIEGEALTVYTP-------AEREPV---- 184
Query: 211 RKLTLGGIPFSLTCILH------------KNYILADPTSEEESIMETLVTVVLDSSNQLV 258
L+ PF +T + D EE + T+ L+ ++
Sbjct: 185 -PLSWLHSPFCVTFSFFGEASQSAGGDEAGDLFAVDANWLEEQVRVGHCTISLNRHGEIC 243
Query: 259 SLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
+ K GGA + + +Q C A+ + KE +++++ ++
Sbjct: 244 QISKLGGAAVDAVALLQ-CNAIALTKAKEFSKLVDDRLA 281
>gi|221114702|ref|XP_002157039.1| PREDICTED: exosome complex component RRP42-like [Hydra
magnipapillata]
Length = 279
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 114/240 (47%), Gaps = 11/240 (4%)
Query: 26 RYF-ERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
+YF + E R D RS + R T+ G +++ GSA K+ T +L +K E+ P
Sbjct: 11 KYFIVSGIEEDFRTDGRSCNDYRAITVQTGIISNTSGSAQVKLAGTNVLIGVKAEISEPL 70
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGK 144
P+ G V SP+ E A ++ L +T S G I+L++L ++ GK
Sbjct: 71 PSKPNLGKVEFFVDCSANASPIFEGRGGDELAFELSAALQNTFS--GAIDLEKLCIIPGK 128
Query: 145 AAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKE 204
A W++Y+D L+ G LFDA ++ AA N +IPT+S I+ E+ E S+ +
Sbjct: 129 ACWILYIDALVLECGGNLFDALSIAVKAALHNTRIPTLS-----IIGEGAEKSIEVSD-D 182
Query: 205 PVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
P N + + IP +T + D T+EEE + + V ++ + S+ K G
Sbjct: 183 PYN--STPIDVSNIPVLVTLNKVGERYIVDATAEEEICSDAQLLVSINQKGNVCSVQKHG 240
>gi|302791331|ref|XP_002977432.1| hypothetical protein SELMODRAFT_106958 [Selaginella moellendorffii]
gi|300154802|gb|EFJ21436.1| hypothetical protein SELMODRAFT_106958 [Selaginella moellendorffii]
Length = 288
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 128/286 (44%), Gaps = 21/286 (7%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
L Y E + +R D R RN +I +G + A+GSA ++G T ++ ++K E+ +P
Sbjct: 9 LDYIEGGVKHDLRSDGRGRYHFRNLSIQVGIIPQANGSARVRLGGTDLIVSVKAELGSPR 68
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI---------SSSGMINL 135
P+ G + + CS P + +LS + + I+L
Sbjct: 69 SCRPNYGSIEVMVE----CSATAGPEFEGRGGEDLNMELSRALQRCFVGGPSGAGAAIDL 124
Query: 136 KELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEE 195
L +V K W +++D +++DG L DA LS AA SN IP+V K+
Sbjct: 125 STLGIVASKFCWELFVDCLVVNSDGNLLDA--LSIGAALSNTGIPSV-----KVTGNTAS 177
Query: 196 QKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSN 255
+ + + E E +L +P +T + + D T EEE M + V+V ++S
Sbjct: 178 EDDADLEVGDNPDEFARLDASKVPLIITLTKIGRHYIVDATPEEEMGMSSAVSVAVNSKG 237
Query: 256 QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEI 301
++ L K G L S V D I++ + ++L +++ I+ E+
Sbjct: 238 LILGLTKRGDGGLD-PSVVTDMISVAKHIARDLIVLVDTEIAAAEL 282
>gi|326922105|ref|XP_003207292.1| PREDICTED: exosome complex exonuclease RRP42-like [Meleagris
gallopavo]
Length = 291
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 114/250 (45%), Gaps = 23/250 (9%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIIHGVQEDLRVDGRGCEDYRCAEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAEA-APVVAKQLSDTISSSGMINLKELSLVG 142
PDEG ++F + CS P GR E +A L SS G I+LK L +
Sbjct: 73 KPDEG--YLEFFVD--CSANATPEFEGRGGEELGTEIASTLYRIFSSEGSIDLKSLCINP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP K+ +L +E+ + E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------KVRVLEDEEGSKEIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLTCILHKNYI----LADPTSEEESIMETLVTVVLDSSNQLV 258
+ +L + +P CI+ N I + D T +EE+ + + + S L
Sbjct: 182 LSDDPYDCIRLNVDDVP----CIVTLNKIGYRHVVDATLQEEACCLASLLIAITSKGALT 237
Query: 259 SLYKPGGAVL 268
+ K G L
Sbjct: 238 CMKKIGKGSL 247
>gi|406604497|emb|CCH44059.1| hypothetical protein BN7_3618 [Wickerhamomyces ciferrii]
Length = 304
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 116/248 (46%), Gaps = 28/248 (11%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + IR D R + R+ I++G G K+G T ++A I E++TP + EG
Sbjct: 19 LKQGIRLDGRKTDQFRDVEITLG---DEYGYVDVKLGKTRVVARISAEIVTPYEDRAFEG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ + P+ S + GR ++ ++ + + + SG ++L+ L ++ G W +
Sbjct: 76 LFQVSTEISPMASAMFENGRQSDDELLITRTVEKAVRRSGALDLESLCIIAGSKCWSIRA 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ LD DG DA+ ++ +A + + +++ +I++ P E E+ PV
Sbjct: 136 DVHFLDCDGGFIDASCIAVMAGLQHFRKNDITVSGEQIIVHPVE------ERAPV----- 184
Query: 212 KLTLGGIPFSLTCILH-------------KNYI-LADPTSEEESIMETLVTVVLDSSNQL 257
+L++ +P +T + N I + D T +EE + +TV ++ + ++
Sbjct: 185 ELSILHVPICVTFAFYNPTNVEENIKGDSNNEISVVDATLQEELSQDGTLTVTINKNREI 244
Query: 258 VSLYKPGG 265
+ K GG
Sbjct: 245 CQITKAGG 252
>gi|328767537|gb|EGF77586.1| hypothetical protein BATDEDRAFT_91577 [Batrachochytrium
dendrobatidis JAM81]
Length = 276
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 136/286 (47%), Gaps = 21/286 (7%)
Query: 13 EMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTM 72
E E+ R F ++ + IR D R+ + RN I++G G A ++G T +
Sbjct: 5 EQELSTNEREFVVKAIQ----SGIRTDGRTSNTIRNIKITLGPQL---GFAQVQLGKTRI 57
Query: 73 LAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGM 132
++ + E++ PS +P +G + + P+ SP +E ++++ L + + +
Sbjct: 58 MSTVSCEIVRPSSGNPSDGVIHFNTEFSPMASPAFEVDSTSENEILISRMLEKALRRARV 117
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVML 192
++ + L +V G+ W + +DI L+ +G + D A ++A+ + + + P V++ + +
Sbjct: 118 VDTEGLCIVAGEKVWAIRVDIRVLNHEGNILDCACIAAMCSLLHFKRPDVTVIGEDVTIH 177
Query: 193 PEEQKEENSEKEPVNKEKRKLTLGGIPFSLT-CILHKN-YILADPTSEEESIMETLVTVV 250
E EK P+ L + IP +T H+ Y + DP+ EE + +T+V
Sbjct: 178 TLE------EKNPIG-----LNIHHIPICVTFAFFHQGEYQVIDPSLLEEQAQDGDMTIV 226
Query: 251 LDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
++ +L +L K GG ++ + C + + ++ Q++ +AI
Sbjct: 227 VNIHRELCTLSKAGGTPISPEQVIH-CANVAAIKSADITQLIRQAI 271
>gi|221221406|gb|ACM09364.1| Exosome complex exonuclease RRP45 [Salmo salar]
Length = 231
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 111/228 (48%), Gaps = 16/228 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + + E R D R R+ IS G + G +G T ++A + E++TP
Sbjct: 13 FLLKAIEEKKRLDGRQTYDYRSIKISFG---TDYGCCFVDLGKTRIMAQVSCELITPKEN 69
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P+EG + + + P+ SP GR +E + +QL + +S I+ + L +V G+
Sbjct: 70 RPNEGIMFFNIELSPMASPAFEMGRQSELLVKLNRQLERCLRNSKCIDTESLCVVSGEKV 129
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W + +D+ L+ DG L DAA ++A+AA + + P V + ++ + E E++P+
Sbjct: 130 WQIRVDVRLLNHDGNLMDAASIAAIAALCHFRRPDVGIQGEEVTVYSTE------ERDPI 183
Query: 207 NKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLD 252
L++ +P S + Y+L DP EE +M+ L+ + ++
Sbjct: 184 -----PLSIYHMPICVSFSFFQQGTYLLVDPCEREERVMDGLLMIAMN 226
>gi|323509319|dbj|BAJ77552.1| cgd7_2380 [Cryptosporidium parvum]
Length = 408
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 127/278 (45%), Gaps = 24/278 (8%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSI 95
+R D R+++ RN I++ G IG T +L+ +K E++ PS E EG +S
Sbjct: 13 LRLDGRTMNEYRNVKINLNKNY---GEVEVNIGRTHVLSVVKSELVAPSQERSSEGFISF 69
Query: 96 DFHMPPI----CSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ P+ S R R + A + + +G I+ + L ++ G W V
Sbjct: 70 TVDIGPLSINPTSHAFRHNRTTLGTEI-ANYIERILKETGAIDTEILCILSGVCVWSVKC 128
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
+I+ L DG LFDA L++ ++ + + + +D L + + E E++ E
Sbjct: 129 EIHVLFDDGNLFDACLMATLSGLKHYRYNEIDVDS----FLKKSKCEGFGERDYQRLENT 184
Query: 212 KLTLGGIPFSLTCI---LHKNYI--------LADPTSEEESIMETLVTVVLDSSNQLVSL 260
L IPF++ + YI + DP S+EESI +T++ + ++ ++ +
Sbjct: 185 IRKLEMIPFNVHHFPLSISIGYINGKEGLSYIVDPNSDEESISDTIIHISINDKQEVCGI 244
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISG 298
K GGA L+ + + I + ++LHQ ++A G
Sbjct: 245 SKFGGAKLS-LNQINFAIQIATIHSEKLHQEFKKAFDG 281
>gi|402592869|gb|EJW86796.1| hypothetical protein WUBG_02293 [Wuchereria bancrofti]
Length = 393
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 126/272 (46%), Gaps = 16/272 (5%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+F +++R D R R + +G S GS L +G T +LA + ++ PS
Sbjct: 13 FFLNSFKQNVRVDGRKCDEFREVKVIVG---SELGSCLVMLGETKVLAQVSCSLVEPSTT 69
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+ G + + M P+ SP GR + + L G+++L+ L L K
Sbjct: 70 RGNMGTIEVQVDMSPMASPDYEDGRLNSKGLELMRILELLYRDCGVVDLESLCLRTFKQV 129
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W + +D++ L +DG+L D A +++ A ++ + P VS+ I++ N EK P+
Sbjct: 130 WQIRIDVHVLASDGSLVDCACIASSTALAHFRRPDVSVLPDSIII------HSNDEKIPI 183
Query: 207 NKEKRKLTLGGIPFSLTC-ILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
+ L + +P +T I + DPT +EE + + V + +++ +L++ G
Sbjct: 184 S-----LNIYHMPICVTFGITSDGQNIIDPTDKEEQCLGGSLIVATNKRHEICALHQSGK 238
Query: 266 AVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
+L+ VQ C+ QR ++ +++ I+
Sbjct: 239 FLLSEQLIVQ-CVDRAIQRAIDVSELIYSVIA 269
>gi|66362890|ref|XP_628411.1| RRP45-like archaeo-eukaryotic exosomal rnase, PH domain
[Cryptosporidium parvum Iowa II]
gi|46229803|gb|EAK90621.1| RRP45-like archaeo-eukaryotic exosomal rnase, PH domain
[Cryptosporidium parvum Iowa II]
Length = 432
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 127/278 (45%), Gaps = 24/278 (8%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSI 95
+R D R+++ RN I++ G IG T +L+ +K E++ PS E EG +S
Sbjct: 37 LRLDGRTMNEYRNVKINLNKNY---GEVEVNIGRTHVLSVVKSELVAPSQERSSEGFISF 93
Query: 96 DFHMPPI----CSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ P+ S R R + A + + +G I+ + L ++ G W V
Sbjct: 94 TVDIGPLSINPTSHAFRHNRTTLGTEI-ANYIERILKETGAIDTEILCILSGVCVWSVKC 152
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
+I+ L DG LFDA L++ ++ + + + +D L + + E E++ E
Sbjct: 153 EIHVLFDDGNLFDACLMATLSGLKHYRYNEIDVDS----FLKKSKCEGFGERDYQRLENT 208
Query: 212 KLTLGGIPFSLTCI---LHKNYI--------LADPTSEEESIMETLVTVVLDSSNQLVSL 260
L IPF++ + YI + DP S+EESI +T++ + ++ ++ +
Sbjct: 209 IRKLEMIPFNVHHFPLSISIGYINGKEGLSYIVDPNSDEESISDTIIHISINDKQEVCGI 268
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISG 298
K GGA L+ + + I + ++LHQ ++A G
Sbjct: 269 SKFGGAKLS-LNQINFAIQIATIHSEKLHQEFKKAFDG 305
>gi|325187967|emb|CCA22510.1| exosome complex exonuclease RRP42like protein putati [Albugo
laibachii Nc14]
Length = 298
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 9/275 (3%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS--TTMLAAIKMEVMT 82
L++ + +A ++R D RS + RN + + ++GSA K + T +LA++K+EV++
Sbjct: 8 LQFIKEGIACNVRADGRSRTSHRNVMLETSLLPHSNGSARVKQQNFGTDVLASVKLEVLS 67
Query: 83 PSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI-SSSGMINLKELSLV 141
PSLE+P+ G ++++ P S + GR + + QL I +S I+L + +V
Sbjct: 68 PSLEAPNSGVLNVNVTCFPSISSKITNGRALDEINIELSQLMQRIFTSHKSIDLNKFCIV 127
Query: 142 GGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENS 201
+ W +++D+ ++ G+L D ++ AA P V +++ + ++K
Sbjct: 128 PSQFVWGIFVDVVVYESTGSLPDLISIAMYAALKKTLFPCV-----RMLGVEGDEKILQV 182
Query: 202 EKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
E++P E T+ P T NY + DPT EEE + T V L+ + +
Sbjct: 183 ERDPAAGEYLAATV-CFPLCTTICKIGNYSVMDPTLEEELCVSTQNVVALNREGSICGIQ 241
Query: 262 KPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
K G +QD + L Q +++AI
Sbjct: 242 KRYGDGAISMDELQDMTDQACEHTMALFQRIDKAI 276
>gi|339244011|ref|XP_003377931.1| putative exosome complex exonuclease RRP43 [Trichinella spiralis]
gi|316973204|gb|EFV56824.1| putative exosome complex exonuclease RRP43 [Trichinella spiralis]
Length = 280
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 133/287 (46%), Gaps = 21/287 (7%)
Query: 12 SEMEVDAFRRLF-PLRYFERHLAES-IRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
SEM D +++ P + ++ ++ IR D R ++ RN + + +AD SA+A+IG
Sbjct: 2 SEMLSDKQKKVIEPSEHIREYITKNKIRYDGRKTNQFRNAAVHRNMITTADSSAVARIGG 61
Query: 70 TTMLAAIKMEVMTPSLESPDEG-CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTIS 128
T + I +E+M P G V+I+ P I +V + + K L +
Sbjct: 62 TAAICGINLEIMENDTLIPSPGLVVNIESVSPTI---VVSWQNEIDKTKCILKSLIE--- 115
Query: 129 SSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL--DD 186
++N K L + G+ W++Y D LD G + + L++ +AA L+ P V + +D
Sbjct: 116 -KNIVNSKSLEIFDGELFWVIYCDFVVLDCAGGILEVCLVALLAALQELRFPVVKVLHED 174
Query: 187 GKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYIL-ADPTSEEESIMET 245
KI + + K + +E PV L P + + + + IL DPT EE ++
Sbjct: 175 FKINL--KNIKVDTAETSPV------LFPNVYPVACSFLKFGDEILICDPTDEETKLIGD 226
Query: 246 LVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
T+++ + L L+K GGA + + + +R + + Q+L
Sbjct: 227 AFTIIVGAQKTLCGLFKTGGAASLSKQLIDESVEHALKRRRHILQLL 273
>gi|380479303|emb|CCF43100.1| 3' exoribonuclease [Colletotrichum higginsianum]
Length = 298
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 125/274 (45%), Gaps = 18/274 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + L E++R D R + R ++ G G A ++G T +L + EV P +
Sbjct: 14 FVTQALKENLRLDGREFDQYREAQLTFG---DEFGVANVELGKTRILVKVSAEVTVPYAD 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P EG I + P+ SP RP EA ++++ L TI SG ++ + L LV G+
Sbjct: 71 RPFEGIFQITSELSPMASPAFEINRPTEAEVLLSRLLEKTIRRSGALDTESLCLVAGQKV 130
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W V D++ L DG L DAA L+ VAA + + P S + + + +E+EPV
Sbjct: 131 WSVRADVHVLSHDGNLTDAACLAVVAALRHFRKPDTSNEGESLTIFTP------AEREPV 184
Query: 207 NKEKRKLTLGGIPFSLTCILHKN---YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
L+ PF +T + L D EE + + TV L+ ++ + K
Sbjct: 185 -----PLSWLHSPFCVTFSFFGDEGEITLVDANWIEEQLRTSSATVSLNKHGEISQISKL 239
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
GG + + + C + Q+ K+ +++E ++
Sbjct: 240 GGTPVEAVTLLH-CGNVALQKAKDFSTLVDEKLA 272
>gi|426192955|gb|EKV42890.1| hypothetical protein AGABI2DRAFT_228615 [Agaricus bisporus var.
bisporus H97]
Length = 283
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 124/270 (45%), Gaps = 19/270 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L ES+R D RSL + R G G +G T ++A + +++ P+ E P EG
Sbjct: 18 LKESLRLDGRSLLQQRKLEFRFGPEL---GYVECNLGKTMVIAQVDAKMVKPTPERPFEG 74
Query: 92 CVSIDFHMPPICSPLVRPGRPA-EAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVY 150
+SI + P+ S GR A E ++ + L + S I+ + L ++ G W +
Sbjct: 75 SISIHSEISPMASSEYEAGRAASEEEVMINRMLDKVLRRSDAIDKESLCILAGHRVWHLR 134
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK 210
+ + L G + D A L+ + A + + P V + ++++ P +E+ PV
Sbjct: 135 ITFHFLSDAGNMLDCACLAGIVALRHFRRPEVEVIGDEVIVHP------PTERAPV---- 184
Query: 211 RKLTLGGIPFSLTCILHKNYILA---DPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAV 267
L + PF T + + DP+ E+ + L+++ L++ +L L K GG
Sbjct: 185 -PLAIHHTPFCFTFAFFPDATTSPVLDPSQLEQRLSAGLLSIALNAQKELCVLQKLGGVP 243
Query: 268 LAYTSAVQDCIALTRQRVKELHQILEEAIS 297
L + ++ + + Q+ KELH+ +E ++
Sbjct: 244 LPHEEIIR-LVDTSVQKAKELHEFVETRLT 272
>gi|406868202|gb|EKD21239.1| exosome complex exonuclease [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 305
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 124/277 (44%), Gaps = 30/277 (10%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++F + L E+IR D R+ + R + G +L K T ++A +TP L
Sbjct: 13 QFFAKALHENIRLDGRAFDQYRAVELEFGEELGVVDLSLGKTRIHTHISA----TITPPL 68
Query: 86 ES-PDEGCVSIDFHMPPICSPLVRPG-RPAEAAPVVAKQLSDTISSSGMINLKELSLVGG 143
+ P +G +I + P+ SP + RP+ ++++ L TI S ++ + L L+ G
Sbjct: 69 PTHPTDGLFTITTELSPMLSPSIESSSRPSVNETLLSRLLEKTIRRSSALDTESLCLIAG 128
Query: 144 KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEK 203
W + D++ L DG L DAA L +AA + + P V ++++ E+
Sbjct: 129 SKVWHIRADVHVLSHDGNLVDAACLGVIAALQHFRKPDVETKGEEVIVYS------TRER 182
Query: 204 EPVNKEKRKLTLGGIPFSLTCILH------------KNYILADPTSEEESIMETLVTVVL 251
EPV KL+L P +T + K +L D EE + E VTV +
Sbjct: 183 EPV-----KLSLLHFPLCVTFSFYGEGILGKDGEGEKEKVLLDAGLLEEQLREGSVTVGM 237
Query: 252 DSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKEL 288
+ ++ + K GG V + V C+ + +VKE+
Sbjct: 238 NRHGEVCQIAKLGG-VPVHALTVLRCVEVAGLKVKEM 273
>gi|403413602|emb|CCM00302.1| predicted protein [Fibroporia radiculosa]
Length = 283
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 124/265 (46%), Gaps = 18/265 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +S+R D R+ R+ T++ G S G +G T ++A + ++ P E P EG
Sbjct: 19 LKQSLRVDGRNPLEMRSPTLTFG---SELGWVECGMGKTRVMAQVDARMVKPPPERPLEG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++I + P+ S GRP++ + + L + S +++ + L ++ G+ W + L
Sbjct: 76 IITIHSELSPMASNEYEVGRPSDEEVTITRMLDKVLRRSDVVDKESLCVLAGQRVWHIRL 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
I+CL G + D A L+ + A + + P V E +E + P+ +
Sbjct: 136 TIHCLADAGNMLDCACLAGIVALKHFRRPEV-----------EVVGDEVTVHHPLERAPM 184
Query: 212 KLTLGGIPFSLTCILHKN---YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
L++ PF LT + + DP+ E+ + L++V L++ +L + K GG L
Sbjct: 185 PLSMHHTPFCLTFAYFPDPSTLPVLDPSHLEQRLSTGLLSVALNAQRELCVVQKAGGIPL 244
Query: 269 AYTSAVQDCIALTRQRVKELHQILE 293
++ + + ++ KEL +I+E
Sbjct: 245 TPEEILR-IVNIAVEKAKELDKIVE 268
>gi|119625656|gb|EAX05251.1| exosome component 9, isoform CRA_e [Homo sapiens]
Length = 242
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 118/241 (48%), Gaps = 16/241 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + + + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P ++ + Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 G 264
G
Sbjct: 238 G 238
>gi|410932317|ref|XP_003979540.1| PREDICTED: exosome complex component RRP45-like [Takifugu rubripes]
Length = 312
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + +AE R D R R +S GA G ++G T ++A + E++ P
Sbjct: 13 FLLKAIAEKKRLDGRQTYDYRRIKVSFGADY---GCCFVELGETRVMAQVSCELVAPKES 69
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P+EG + + + P+ SP GR +E + + +QL + +S I+ + L +V G+
Sbjct: 70 RPNEGILFFNIELSPMASPAFEAGRQSELSVKLNRQLERCLRNSKCIDTESLCVVSGEKV 129
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS 183
W + +D++ L+ DG L DAA ++A+ A S+ + P VS
Sbjct: 130 WQIRVDVHLLNHDGNLMDAASIAAITALSHFRRPDVS 166
>gi|449544735|gb|EMD35707.1| hypothetical protein CERSUDRAFT_115670 [Ceriporiopsis subvermispora
B]
Length = 283
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 123/269 (45%), Gaps = 18/269 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E +R D R R TI+ G G +G T +LA + +++ P E P EG
Sbjct: 19 LKEKLRVDGRLPLEMRTPTITFGPEL---GWVECALGKTRVLAQVDAKMVKPLPERPLEG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++I + P+ S PGRP++ + + L + S +++ + L ++ G+ W + L
Sbjct: 76 IITIHSEISPMASSDYEPGRPSDEEVTITRMLDKVLRRSDVVDKESLCILAGQRVWHLRL 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
I+CL G + D A L+ V AF + + P V + + SE+ PV
Sbjct: 136 TIHCLADAGNMLDCACLAGVIAFKHFRRPEVEVVGEE------VTVHHPSERAPV----- 184
Query: 212 KLTLGGIPFSLTCILHKNYILA---DPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
L++ P+ LT + A DP+ E+ + L+++ L++ +L + K GG L
Sbjct: 185 PLSMHHTPYCLTFAYFPDTSTAPVLDPSHLEQRLSAGLLSIALNAQRELCVVQKAGGVPL 244
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAIS 297
+ I + + KEL +++E+ +
Sbjct: 245 G-ADEILGIIDVAVDKAKELDRLVEQRLK 272
>gi|322699612|gb|EFY91372.1| 3' exoribonuclease [Metarhizium acridum CQMa 102]
Length = 288
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 122/273 (44%), Gaps = 23/273 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + L E +R D R + R ++ G D +A + ++A + EV P +
Sbjct: 14 FLTKALEEGLRLDNRKFEQFRPLELTFG-----DEFGVADV---KIVAKVSAEVTVPFTD 65
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P +G SI + P+ +P RP E ++++ L TI SG ++ + L LV G+
Sbjct: 66 RPFDGIFSISSELSPMVAPSFEVNRPTEQEVLLSRILEKTIRRSGALDTESLCLVAGQKC 125
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W V D++ L DG L D A + VAA + + P +++ + + +E+EPV
Sbjct: 126 WSVRADVHVLSHDGNLLDVACFAVVAALRHFRKPETTMEGETLTIYTP------AEREPV 179
Query: 207 NKEKRKLTLGGIPFSLTCILHKN---YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
L+ PF +T + +L D T EE + + T L+ ++ + K
Sbjct: 180 -----ALSWLHSPFCVTFSFFGHEGETVLMDTTWLEEQLRVSSCTFSLNKHGEICQVSKL 234
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GGA + V+ C L +RVK +++ +
Sbjct: 235 GGADVDAPLFVR-CAQLALERVKVFTDLVDRKL 266
>gi|374724588|gb|EHR76668.1| exosome complex component RRP42 [uncultured marine group II
euryarchaeote]
Length = 261
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 97/229 (42%), Gaps = 21/229 (9%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
+ +R D R R T+ + +A+GSA +G T + A +K E+ TP + P +G +
Sbjct: 19 DDLRLDGRGRWEGREVTLETDCLYNAEGSAKVVMGGTIVYAGVKFELRTPWPDRPAQGSL 78
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDI 153
+ P+ PG P+ + + + + I SG I+++ L +V G+ W V +DI
Sbjct: 79 MCGAELRPVAHRKYEPGPPSPQSIELGRVVDRGIRESGCIDMESLCIVPGEKVWGVMIDI 138
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKL 213
+ L G +FDA L+A+AA +P D G E L
Sbjct: 139 HVLSDGGNIFDACGLAAIAALRTAVVPAQRFDVG---------------------EDYTL 177
Query: 214 TLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
+ G P + + DP+ EEE + + + L L SL K
Sbjct: 178 KVKGTPIMASFTRVGGRYVYDPSEEEELGGDERIHITLGDEGHLHSLQK 226
>gi|156056118|ref|XP_001593983.1| hypothetical protein SS1G_05411 [Sclerotinia sclerotiorum 1980]
gi|154703195|gb|EDO02934.1| hypothetical protein SS1G_05411 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 344
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 149/340 (43%), Gaps = 75/340 (22%)
Query: 17 DAFRRLFPLRYFERHLA------ESIRPDARSLSRARNTTISMGAVASADGSALAKIGST 70
+ F +L P Y HL S R + RS ++ R I+ G++ A+GSA+ +IG T
Sbjct: 14 ETFAKLSPHPYLLAHLQPSSPTNSSKRANGRSPTQFRGPHINTGSLTHAEGSAVVRIGDT 73
Query: 71 TMLAAIKMEVM---------------TPSLESPDEGCVSIDFHMPPI-----CSPLVRPG 110
++ ++ E++ PS +D +P I CSP PG
Sbjct: 74 AVVCGVRGEILLASNVGTYRVDKSTTAPSSRPGYNEAKELDLLVPNIELATGCSPAFLPG 133
Query: 111 RPAEA-APVVAKQLSDTISSSGMINLKELSL-----------------------VGGKAA 146
+P A ++ ++ + SS M++ ++L + KA
Sbjct: 134 QPPTTLAQSLSTRIYSLLHSSRMVDDEDLRIWYQPPDLNEQDRMEDEEEPESVEPEVKAF 193
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W +Y+DI + DG FDAA + V+A N+++P D + ++L +++ +
Sbjct: 194 WTLYIDILFISLDGNPFDAAWAAVVSALRNVRLPKAHWDVDREMILCDDE---------I 244
Query: 207 NKEKRKLTLGGIPFSLTCIL-----------HKNYILADPTSEEESIMETLVTVVLD--- 252
+ KR L L G+P ++TC++ K ++LADP + EE + + +T+V+D
Sbjct: 245 SLSKR-LNLRGLPVAVTCLVFKAKEQKRGKDKKYWVLADPDTFEEGLCDESITMVVDCEA 303
Query: 253 SSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
+++ L K GG + ++ + L R EL +L
Sbjct: 304 GKPKIMGLSKVGGTTVG-RDEMKHILELAETRWHELSPLL 342
>gi|307176033|gb|EFN65792.1| Exosome complex exonuclease RRP42 [Camponotus floridanus]
Length = 426
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 124/249 (49%), Gaps = 24/249 (9%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTT-MLAAIKMEVMTPSLESPDEGCVS 94
+R D RS + R+ I + A GSA +IG+ T +L +K+E+ TP E PDEG
Sbjct: 156 LRNDGRSRCQYRSIEIETRLMPHAHGSARLRIGNITDVLVGVKLEIDTPYAEKPDEG--K 213
Query: 95 IDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTIS----SSGMINLKELSLVGGKAAWMVY 150
+DF + CS P + +A ++S+ +S + + +L++L ++ K W +Y
Sbjct: 214 LDFFVD--CSANATPAFEGKGGDDLATEISNVLSMAYQTPDVFDLRQLCIIPHKKCWKMY 271
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTV---SLDDGKIVMLPEEQKEENSEKEPVN 207
+DI L G LFDA + AA N +IP V +LD G+ P+ Q ++
Sbjct: 272 VDILILQCGGNLFDAVGAAVKAALYNTEIPKVIAATLDGGE----PDIQVSDDP------ 321
Query: 208 KEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
+ KL + P +T C + N+++ DPT EEES + + + + ++ S+ K G
Sbjct: 322 YDCIKLDITTYPSIVTVCKIGDNFVI-DPTLEEESCSAVNIIMSVMPNGKVTSMVKQGYG 380
Query: 267 VLAYTSAVQ 275
L T+ ++
Sbjct: 381 SLLPTTLIK 389
>gi|209879934|ref|XP_002141407.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209557013|gb|EEA07058.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 414
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 125/275 (45%), Gaps = 22/275 (8%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSI 95
+R D R+ + R I++ + DG + KIG T +L IK E+M P+++ P EG V+
Sbjct: 13 LRIDGRTSNEFRRIQITLNK--TFDGVEV-KIGKTHVLCIIKAELMIPNIDRPSEGQVTF 69
Query: 96 DFHMPPIC----SPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
P+ + R R A + + A + T+ +G + + L ++ G AW +
Sbjct: 70 SVDYGPLSLNPNGQVYRHERNALSIEL-ANYIERTLKETGAFDTEVLCIISGLCAWSIRC 128
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIV----------MLPEEQKEENS 201
DI L DG LFD +L+ ++AF + + + L EQ +N
Sbjct: 129 DIRALCDDGNLFDTCILATLSAFRHFRYKDIDCSSFLNKLKLNKYKNKDYLRIEQAIKNM 188
Query: 202 EKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ P+N L+ I T + ++ + DP SEEESI++ ++ + ++ Q+ L
Sbjct: 189 DMIPLNIYHFPLS---ISIGYTRVNNELQYIVDPCSEEESILQAVLHIAINGGQQVCGLS 245
Query: 262 KPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
KPGG L + I L + +H+ +++
Sbjct: 246 KPGGEKLT-IDQINFAIQLAKNHGSNIHEYVKKVF 279
>gi|409041875|gb|EKM51360.1| hypothetical protein PHACADRAFT_129278 [Phanerochaete carnosa
HHB-10118-sp]
Length = 283
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 125/269 (46%), Gaps = 18/269 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + +R D R R T+S G G +G T +LA + +++ P+ E P EG
Sbjct: 19 LKQGLRLDGRLPLELRTPTLSFGPDL---GWVECAMGKTRVLAQVDGKMVKPTPERPLEG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++I+ + P+ S PGRP++ + + L + S ++ + L + G+ W + L
Sbjct: 76 IITINSEISPMASSEYEPGRPSDEEVTMTRMLDKVLRRSDAVDKESLCVQAGQRVWHLRL 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
I+CL G L D A L+ + A + + P V + ++ + SE+ PV+
Sbjct: 136 TIHCLADAGNLLDCACLAGIVALKHYRRPEVEVVGDEVTI------HHPSERAPVS---- 185
Query: 212 KLTLGGIPFSLTCILHKN---YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
L+L P+ T + + DP+ E+ + ++++ L++ +L + K GG L
Sbjct: 186 -LSLHHTPYCFTFAYFPDTSTQAVLDPSLLEQRLSAGVLSIALNAQRELCVVQKAGGVPL 244
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAIS 297
A V + + Q+ KEL+ ++E +
Sbjct: 245 A-PDEVLRIVDIAVQKAKELNTLVERRLQ 272
>gi|427795691|gb|JAA63297.1| Putative exosome component 9, partial [Rhipicephalus pulchellus]
Length = 514
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 123/269 (45%), Gaps = 20/269 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
++E R D R+ +R+ +S G G +A +G T ++A + E++ P P EG
Sbjct: 64 VSEDKRVDHRTSKESRHVRVSFGL---DRGCCVASLGDTKVMAQVSAEIIVPKPGRPTEG 120
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ ++ + P+ +P GR + VA+ L I S I+L+ L +V G+ W + +
Sbjct: 121 ELFVNLELSPMAAPHFEAGRLGDYGVEVARLLERCIRDSQCIDLESLCVVSGEKVWALRV 180
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D L+ G + + A ++ + A + + P V++ ++ + P ++E
Sbjct: 181 DAQVLNHQGNIVECAGIATIGALMHFRRPDVTVIGTEVTV-----------HNPRDREPV 229
Query: 212 KLTLGGIPFSLTCILHKN---YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
L L PF L C + +L DPT EE I E L++V ++ ++ L++ G V
Sbjct: 230 PLHLHHYPF-LVCFAFYDDGKTVLIDPTDLEERIAEGLLSVAANAHEEICLLHQHGCTV- 287
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAIS 297
V C L R K L +++ I+
Sbjct: 288 -RKDLVLLCSRLASVRAKTLATMIKAEIA 315
>gi|427787609|gb|JAA59256.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp42
[Rhipicephalus pulchellus]
Length = 289
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 119/256 (46%), Gaps = 8/256 (3%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E++R D RS R + G V++ GS+ ++ +T +L IK E+ P
Sbjct: 13 YIVHGIQENLRCDGRSCLEYRFLELETGLVSNCSGSSHVRLANTDILVGIKAELDAPDPS 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+P G V P+ E A + L+ T SS ++LK L++V G+ A
Sbjct: 73 APHLGRVEFFVDCTANADPVFEGRGGEEIATEIRSALARTYSSPKCLDLKSLAVVPGQQA 132
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W++Y+D+ L+ G+L DA ++ AA +L+IP VS + +E E E
Sbjct: 133 WVLYVDVLILECGGSLIDAVSVAVKAALYDLKIPKVS-------VTIDENGEPEIEVSDD 185
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
+ K+++ +P +T + D T EE++ + + + ++ ++ SL+K G
Sbjct: 186 PYDVNKMSIANVPCFITLSKVGQQFVLDATQEEQACAVGSLAMAVTATGKIASLFKGGTG 245
Query: 267 VLAYTSAVQDCIALTR 282
L + + D I + R
Sbjct: 246 SL-HPENIMDIIEVGR 260
>gi|427795753|gb|JAA63328.1| Putative exosome component 9, partial [Rhipicephalus pulchellus]
Length = 477
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 123/269 (45%), Gaps = 20/269 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
++E R D R+ +R+ +S G G +A +G T ++A + E++ P P EG
Sbjct: 64 VSEDKRVDHRTSKESRHVRVSFGL---DRGCCVASLGDTKVMAQVSAEIIVPKPGRPTEG 120
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ ++ + P+ +P GR + VA+ L I S I+L+ L +V G+ W + +
Sbjct: 121 ELFVNLELSPMAAPHFEAGRLGDYGVEVARLLERCIRDSQCIDLESLCVVSGEKVWALRV 180
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D L+ G + + A ++ + A + + P V++ ++ + P ++E
Sbjct: 181 DAQVLNHQGNIVECAGIATIGALMHFRRPDVTVIGTEVTV-----------HNPRDREPV 229
Query: 212 KLTLGGIPFSLTCILHKN---YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
L L PF L C + +L DPT EE I E L++V ++ ++ L++ G V
Sbjct: 230 PLHLHHYPF-LVCFAFYDDGKTVLIDPTDLEERIAEGLLSVAANAHEEICLLHQHGCTV- 287
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAIS 297
V C L R K L +++ I+
Sbjct: 288 -RKDLVLLCSRLASVRAKTLATMIKAEIA 315
>gi|358056344|dbj|GAA97711.1| hypothetical protein E5Q_04390 [Mixia osmundae IAM 14324]
Length = 287
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 130/272 (47%), Gaps = 21/272 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
LA+ R D R+L+ R ++S GA GS +G T ++A + EV+ P E P EG
Sbjct: 18 LAQGRRLDGRTLTDTRTVSLSFGAEL---GSVTCSMGKTRVMAQVSAEVVRPPPERPYEG 74
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ I + P+ S R E +VA+ L I + ++ + L +V G W + +
Sbjct: 75 FLVISTEVTPLASAAYEMNRQTEEEILVARTLEKAIRRTEAVDRESLCIVAGDKVWSIRV 134
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ L+ DG L D A L+A+AA + + P V++++G V + + E+ PV
Sbjct: 135 DVHFLNDDGNLADCACLAAMAALLHFRRPDVTVENGADVTIHSLE-----ERVPV----- 184
Query: 212 KLTLGGIPFSLTCILHKN-------YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
L + P +T +N + DPT E I +T L++ +++ L K G
Sbjct: 185 PLAIHHTPLCVTFAFFENQASPSDSIVAIDPTGLETQISSGEITYTLNAQSEICVLSKAG 244
Query: 265 GAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
G LA + + L +VKEL ++++ A+
Sbjct: 245 GTPLA-GREIMRMMGLALVKVKELDELIDAAL 275
>gi|340344305|ref|ZP_08667437.1| 3' exoribonuclease [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519446|gb|EGP93169.1| 3' exoribonuclease [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 272
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 121/264 (45%), Gaps = 15/264 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + R D R+L RN I A+ A+GSA ++G + ++ +K++ P + D+G
Sbjct: 19 LEQGKRVDGRALDEPRNLIIETNAIPKANGSARVRLGDSEVICGVKIQPDRPFPDMGDKG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ P+ P V G P +A+ + I S MI+L +L + K+ V+
Sbjct: 79 IFICTAELLPLSHPTVETGPPGPDVIELARVVDRGIRESHMIDLTQLVIEKNKSVVGVFA 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D +D DG LFDA +A AA + + P + +N V E+
Sbjct: 139 DNVVVDYDGNLFDACAYAATAAILSSKTPKWEM--------------KNDVPTLVEGEES 184
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
+ + IP S+T N+I+ DP +E S M+ +T+ DS+ + +L K G +
Sbjct: 185 DVPISTIPVSVTMGKIGNHIIVDPNGDEWSSMDARITITTDSNGNICALQKGGNDGFTFE 244
Query: 272 SAVQDCIALTRQRVKELHQILEEA 295
++ C L+ + ++ + L++A
Sbjct: 245 QVIK-CGELSVKVGAKIREKLKQA 267
>gi|119625657|gb|EAX05252.1| exosome component 9, isoform CRA_f [Homo sapiens]
Length = 423
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 128/262 (48%), Gaps = 17/262 (6%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R RN IS G + G + ++G T +L + E+++P L EG + +
Sbjct: 7 RLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFN 63
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ + +P PGR ++ + + + + +S I+ + L +V G+ W + +D++ L
Sbjct: 64 LELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLL 123
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
+ DG + DAA ++A+ A + + P VS+ ++ + E E++PV L++
Sbjct: 124 NHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDPV-----PLSIH 172
Query: 217 GIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAV 274
+P S Y+L DP EE +M+ L+ + ++ ++ ++ GG +L +
Sbjct: 173 HMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVL 232
Query: 275 QDCIALTRQRVKELHQILEEAI 296
+ C + +V E+ +++ +A+
Sbjct: 233 R-CSKIAGVKVAEITELILKAL 253
>gi|225684062|gb|EEH22346.1| exosome component 9 [Paracoccidioides brasiliensis Pb03]
Length = 295
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 122/255 (47%), Gaps = 20/255 (7%)
Query: 13 EMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTM 72
E+++ A R F L L ++IR D R+L + R +S G + G ++G T++
Sbjct: 4 EVDISANEREFILEA----LHKNIRLDGRALDQLRPLMVSFG---NECGHVKLQLGKTSV 56
Query: 73 LAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGM 132
+ I EV P E ++G ++ + + SP + G +E +A+ L I S
Sbjct: 57 VVRISAEVTKPHPERENDGIFTVVVELNDMASPAFKTGWQSEMETQLARILDRIIRRSNA 116
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVML 192
++ + L + GK W + D++ +D+DG L D+ L+ + A + ++P + +G++ +
Sbjct: 117 LDTESLCIAAGKNCWHIRADVHVIDSDGGLVDSCCLAIMTALLHFRLPEAIVREGRVTVF 176
Query: 193 PEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTVV 250
E++ + P+N L +P S T ++ I+ D S+EE++ E + +
Sbjct: 177 SPEERVPS----PLN-------LTKLPLSTTFNIYDEGRIIVLDAVSKEEAVSEGNLIIA 225
Query: 251 LDSSNQLVSLYKPGG 265
L+ + +L K G
Sbjct: 226 LNKTGELALYIKSDG 240
>gi|258574161|ref|XP_002541262.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901528|gb|EEP75929.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 282
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 130/289 (44%), Gaps = 31/289 (10%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++ + E+ A R F L +++ +R D R L + R+ ++ G
Sbjct: 1 MAKDTELSANERAFILEALQKN----VRLDGRPLDQFRSLNLTFG-------------DE 43
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
++ I EV P E +G ++ + + P GR +++ +++ L +
Sbjct: 44 YGVIVRISAEVTAPRPERESDGIFTVSIELNDMAIPGFETGRQSDSETQLSRTLDKIVRR 103
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189
S ++ + L + G + W V D++ +DADG L D L+ +AA + ++P ++ DGK+
Sbjct: 104 SNALDTESLCIAKGLSCWNVRADVHIVDADGGLVDICCLAIMAALLHFRLPESTVRDGKV 163
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLV 247
+ E EK PV L L +P S+T L+ L D TS EE++ E +
Sbjct: 164 TVYSAE------EKVPV-----PLNLTKVPLSVTFNLYDEGKTTLLDATSSEEAVSEGSL 212
Query: 248 TVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+ LD + + ++LY A + C A +V+EL+ +++ +
Sbjct: 213 IIALDKTGE-IALYSKADGTPADPLNMVACSATALAKVRELNALIQRKL 260
>gi|294948902|ref|XP_002785952.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
gi|239900060|gb|EER17748.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
Length = 350
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 136/298 (45%), Gaps = 33/298 (11%)
Query: 15 EVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLA 74
E A+ +FP + +R D R+L R + +G A G +IGST + A
Sbjct: 8 EAFAYSAIFPEASEKSTSTVGLRADGRTLLDCRRMKLRLGP---ALGQCECRIGSTWVRA 64
Query: 75 AIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAK---------QLSD 125
+ EV+TP E P+EG + + + S P + P A+ QL
Sbjct: 65 VVTGEVITPPPERPNEGKLFVSVDYGAVVSSATLPSGDSAGLPGTAQTPEAVSLCNQLER 124
Query: 126 TISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD 185
+ S ++++ L + GG W V LD++ G + DAA ++VAA + + V+
Sbjct: 125 MLKGSKAVDVEALCIAGGSRVWSVRLDVHVFTDAGNVGDAAATASVAALMHYRRSEVTTM 184
Query: 186 DGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHK------NYILADPTSEE 239
+G V+ E EP+ L++ +P LT L K + +LADPTS E
Sbjct: 185 EGSTVV--------REELEPM-----PLSIHHMPLPLTFTLVKSPDGTTSAVLADPTSLE 231
Query: 240 ESIM-ETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
E + L+ VV++ +L SL KPGG + + +CI R KE+H+++ +A+
Sbjct: 232 ERLSGGALLVVVVNQYGELCSLLKPGGTSCPLPTVI-NCIHAAAGRAKEVHKMIADAL 288
>gi|241813566|ref|XP_002416505.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp42, putative
[Ixodes scapularis]
gi|215510969|gb|EEC20422.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp42, putative
[Ixodes scapularis]
Length = 290
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 126/260 (48%), Gaps = 16/260 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + E++R D RS R+ + G V++ GSA ++ +T +L IK ++ TP
Sbjct: 13 FIIHGIQENLRCDGRSCLEYRDIELETGVVSNCSGSAHVRLANTDILVGIKAQLETPDPG 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAE-AAPVVAKQLSDTISSSGMINLKELSLVG 142
S D+G I+F + C+ P GR E A ++ L+ S ++L+ L++V
Sbjct: 73 STDQG--RIEFFVD--CTANADPEFEGRGGEDIAAEISSALAQAYRSPKCLDLRSLAVVP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
G+ W++Y+DI L+ G+L DA ++ AA +L+IP VS + + E
Sbjct: 129 GQQVWVLYVDILILECGGSLVDAVSVAVKAALYDLKIPKVS-----VTVDENGDPEVEVS 183
Query: 203 KEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
+P + E KL+ +P +T + D T EE++ + + + +S ++ +L+K
Sbjct: 184 GDPFDVE--KLSTENVPCFITLSKVGQQFILDATQEEQACAVGSLALAVTASGKIAALFK 241
Query: 263 PGGAVLAYTSAVQDCIALTR 282
G L + V D I + R
Sbjct: 242 AGTGSL-HPENVMDVIEVGR 260
>gi|432097876|gb|ELK27905.1| Exosome complex component RRP45 [Myotis davidii]
Length = 423
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 129/262 (49%), Gaps = 17/262 (6%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R R+ IS GA G + ++G T +L + E+++P L EG + +
Sbjct: 6 RLDGRQTYDYRSIRISFGADY---GCCVVELGKTRVLGQVSCELVSPKLNRATEGILFFN 62
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ + +P PGR ++ + + L + +S I+ + L +V G+ W + +D++ L
Sbjct: 63 LELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLL 122
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
+ DG + DAA ++A+ A + + P VS+ ++ + E E++PV L++
Sbjct: 123 NHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDPV-----PLSIH 171
Query: 217 GIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAV 274
+P S ++L DP+ EE +M+ L+ + ++ ++ ++ GG +L V
Sbjct: 172 HMPICVSFAFFQQGTFLLVDPSEREERVMDGLLVIAVNKHREICTIQSSGGIML-LNEQV 230
Query: 275 QDCIALTRQRVKELHQILEEAI 296
C + +V E+ +++++A+
Sbjct: 231 LRCSKIAGVKVAEITELIQKAL 252
>gi|384250786|gb|EIE24265.1| exoribonuclease PH component of the exosome [Coccomyxa
subellipsoidea C-169]
Length = 293
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 110/239 (46%), Gaps = 7/239 (2%)
Query: 60 DGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVV 119
D A +G T ++ I + P + P+EG V + P+ SP + GRP EAA V
Sbjct: 10 DSGATLDMGQTKVMTVITPTLTAPYEDRPNEGAVRFNVEYSPMASPSFQAGRPGEAAIEV 69
Query: 120 AKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQI 179
+ L S I+ + L ++ G W + +D++ LD G L DA +L +AA +
Sbjct: 70 TRLLERAFRDSRAIDQEALCVLAGHRVWSLSIDVHVLDNGGNLADACMLCTLAALMAFRR 129
Query: 180 PTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKN--YILADPTS 237
P + G E + + P +E L+L +P ++ ++ ++ DP S
Sbjct: 130 PDTEVAAGGA----ESGRARVTVLSPSAREPVPLSLHHLPLGISFAFFEDGELLVVDPDS 185
Query: 238 EEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
EE+ L+TVV+++ + + ++ K G ++ T V + L R ++ L+ A+
Sbjct: 186 TEEAAAAGLMTVVVNTHSDVCTVRKTSGIGISMTQ-VHRVVRLANSRAGQVMDGLKAAL 243
>gi|134080652|emb|CAK41317.1| unnamed protein product [Aspergillus niger]
Length = 285
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 140/302 (46%), Gaps = 62/302 (20%)
Query: 19 FRRLFPLRYFERHLAE-------SIRPDARSLSRARNTTISMGAVASADGSALAKIGSTT 71
F RL P Y HL+ SIR + R+ S+ R T+ + G++ +GSA+ ++G TT
Sbjct: 19 FARLQPHAYLLAHLSPPASSNQPSIRANGRAPSQFRVTSANTGSLTHTNGSAVVRVGGTT 78
Query: 72 MLAAIKMEVMTPSLESPDEGCVSIDFHMPPI-----CSPLVRPGRPAEAAPVVAKQLSDT 126
+ EV P E+ + ++ +P + C+P PG P A +A+ LS
Sbjct: 79 AVCGDDAEVEDPEDETHIQ---QLNLLVPNLSLSTGCAPGFVPGAPPSA---LAQSLSHK 132
Query: 127 ISSSGMINL-------KELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQI 179
I +NL KE+ KA W++Y+DI + G FDAA S +AA + ++
Sbjct: 133 I-----LNLLHSTKLEKEI-----KAFWVLYIDIMIISLAGNPFDAAWASVLAALRDTKL 182
Query: 180 PTVSLD-DGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSE 238
P D D ++V+ + E +KL+L G+P + +ILADP
Sbjct: 183 PRAWWDVDNEMVVCSD-----------AVSESQKLSLRGLP--------RRWILADPDGY 223
Query: 239 EESIMETLVTVVLDSSNQ------LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
EE + + V +V+D + ++ K GG + ++ + ++ QR ++L IL
Sbjct: 224 EEGLSQERVCIVVDKEQGGKGKTVIQNMEKNGGWAVD-GKELKALVDISAQRWEQLKHIL 282
Query: 293 EE 294
E+
Sbjct: 283 EQ 284
>gi|198419225|ref|XP_002123693.1| PREDICTED: similar to Exosome component 9 [Ciona intestinalis]
Length = 385
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 124/267 (46%), Gaps = 17/267 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + IR D R + R TI + G + +G T ++A + E+ P EG
Sbjct: 20 LTKKIRIDGRGMLEYRGITIHF---SLDHGCCVVNMGGTKVMAQVAAELCRPRESRQSEG 76
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ + M + +P + P +P ++ + + L +I S ++L+EL + G+ +W + +
Sbjct: 77 SLGVQVEMSMMAAPHLDPAKPGDSGAELQQMLERSIVMSQAVDLEELCVRVGEKSWNIQI 136
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
++ L DG L D A ++++ + + + P VS+ ++ + E +K P+
Sbjct: 137 FVHVLSHDGNLLDCATIASMTSLKHFKRPDVSVVGQEVTIHKFE------DKHPI----- 185
Query: 212 KLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
LTL +PF ++ + ++ DPT EE +M+ + V ++ ++ L G L+
Sbjct: 186 PLTLHHVPFCVSFAFFQGGGLMVVDPTLNEEKVMDGKLMVAVNKHKEVCCLQMNGQLQLS 245
Query: 270 YTSAVQDCIALTRQRVKELHQILEEAI 296
+ +C + + + + I+E ++
Sbjct: 246 -KEQILNCTNIASTKAQTFYDIMETSL 271
>gi|367002015|ref|XP_003685742.1| hypothetical protein TPHA_0E02160 [Tetrapisispora phaffii CBS 4417]
gi|357524041|emb|CCE63308.1| hypothetical protein TPHA_0E02160 [Tetrapisispora phaffii CBS 4417]
Length = 303
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 111/249 (44%), Gaps = 29/249 (11%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E+ R D RS + R+ IS G G A +G T + + + P + P EG
Sbjct: 19 LKENQRLDGRSFDKFRDVDISFG---KEYGDATVTLGKTKVQCRVSCSITQPYEDRPFEG 75
Query: 92 CVSIDFHMPPICSPLVRPG-RPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVY 150
I M P+ P G + + ++ + I SG ++++ L +V G W +
Sbjct: 76 LFIISTEMSPMAGPQFENGSNTGDDEVLCSRIIEKAIRRSGALDVEGLCIVAGSKCWAIR 135
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK 210
D++ LD DG + DA+ L+ + A + + P VS+ ++ + P +E+EPV
Sbjct: 136 ADVHVLDCDGGIIDASCLAVICALLHFRKPDVSILGEQVTVHP------INEREPV---- 185
Query: 211 RKLTLGGIPFSLTCIL--------------HKNYILADPTSEEESIMETLVTVVLDSSNQ 256
L + IP +T + + D T +EES+ + ++TV L+ + +
Sbjct: 186 -ALGILHIPICVTFSFFNPQDVEENIKGAGNNEIAIIDATLKEESLRDGVLTVTLNKNRE 244
Query: 257 LVSLYKPGG 265
+V + K GG
Sbjct: 245 VVQVSKAGG 253
>gi|389739495|gb|EIM80688.1| ribosomal protein S5 domain 2-like protein [Stereum hirsutum
FP-91666 SS1]
Length = 286
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 129/291 (44%), Gaps = 25/291 (8%)
Query: 23 FPLRYFERH-LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVM 81
P + F H L +++R D R+ R + G G G T +LA + +++
Sbjct: 8 LPEKEFLIHALEQNLRLDGRAALEMRLPELIFG---DELGCVECVFGKTRVLAQVDAKMI 64
Query: 82 TPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLV 141
P+ E P EG + I + P+ S PGRP++ +++ L + S ++ + L ++
Sbjct: 65 RPTPERPYEGQILIHSEISPMASSEYEPGRPSDEEVALSRMLDKVLRRSDAVDKEGLCIL 124
Query: 142 GGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENS 201
G+ W + + I+CL G L D A L+ +AA + + P V + ++ + P S
Sbjct: 125 AGQRVWQLRITIHCLADAGNLLDCACLAGIAALKHFRRPEVEVVGDEVTVHP------PS 178
Query: 202 EKEPVNKEKRKLTLGGIPFSLTCIL-------HKNYILADPTSEEESIMETLVTVVLDSS 254
+ PV L+L PF +T H L DP+ E+ + +++ L++
Sbjct: 179 SRAPV-----PLSLHHTPFCITFAYFPSPSHPHTPTCLLDPSHLEQRLSTGTLSLALNAQ 233
Query: 255 NQLVSLYKPGGAVLA---YTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
+L ++K GG LA AV+ + R+ K L L E G ++
Sbjct: 234 RELCVVHKAGGLPLAPEEVLRAVEVAVGKARELEKFLEGRLREDWKGRNVE 284
>gi|294952965|ref|XP_002787536.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
gi|239902542|gb|EER19332.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
Length = 350
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 136/298 (45%), Gaps = 33/298 (11%)
Query: 15 EVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLA 74
E A+ +FP + +R D R+L R + +G A G ++GST + A
Sbjct: 8 EAFAYSAIFPEASEKSTSTVGLRADGRTLLDCRRMKLRLGP---ALGQCECRVGSTWVRA 64
Query: 75 AIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAK---------QLSD 125
+ EV+TP E P+EG + + + S P + P A+ QL
Sbjct: 65 VVTGEVITPPPERPNEGKLFVSVDYGAVVSSATLPSGDSAGLPGTAQTPEAVSLCNQLER 124
Query: 126 TISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD 185
+ S ++++ L + GG W V LD++ G + DAA ++VAA + + V+
Sbjct: 125 MLKGSKAVDVEALCIAGGSRVWSVRLDVHVFTDAGNVGDAAATASVAALMHYRRSEVTTM 184
Query: 186 DGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHK------NYILADPTSEE 239
+G V+ E EP+ L++ +P LT L K + +LADPTS E
Sbjct: 185 EGSTVV--------REELEPM-----PLSIHHMPLPLTFTLVKSPDGTTSAVLADPTSLE 231
Query: 240 ESIM-ETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
E + L+ VV++ +L SL KPGG + + +CI R KE+H+++ +A+
Sbjct: 232 ERLSGGALLVVVVNQYGELCSLLKPGGTSCPLPTVI-NCIHAAAGRAKEVHKMIADAL 288
>gi|148703330|gb|EDL35277.1| exosome component 8, isoform CRA_e [Mus musculus]
Length = 146
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 14/155 (9%)
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
AW++Y D+ CLD DG + DA + +AA N+Q+P V+++ EE + E
Sbjct: 2 AWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------EETALAEV 49
Query: 206 VNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
K+K L + P + + + ++ DPT EEE + +TVV D +L L+KPG
Sbjct: 50 NLKKKSYLNVRTNPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG 109
Query: 265 GAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
G+ L + +QDC++ R KE+ ++L+E I M
Sbjct: 110 GSGLT-GAKLQDCMSRAVTRHKEVSKLLDEVIQSM 143
>gi|398404486|ref|XP_003853709.1| hypothetical protein MYCGRDRAFT_108491 [Zymoseptoria tritici
IPO323]
gi|339473592|gb|EGP88685.1| hypothetical protein MYCGRDRAFT_108491 [Zymoseptoria tritici
IPO323]
Length = 292
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 127/264 (48%), Gaps = 17/264 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E+IR D R+ + R ++ G G ++G T ++ AI EV+ P + +G
Sbjct: 19 LRENIRLDNRAFDQFRPIELAFG---DEYGVCDVRLGKTRVMVAISAEVIAPYTDRKFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + PI SP GR + ++++ L TI SG ++ + L ++ G + +
Sbjct: 76 VFTISTELSPIASPAFEVGRQDQTEILLSRLLEKTIRRSGALDTESLCIIAGSKCFHIRA 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
DI+ LD DG + DAA ++ VAA + + P + + ++ + + E+EPV
Sbjct: 136 DIHVLDHDGNIIDAACVALVAALMHFRRPDIEIHGEEVTVFSLQ------EREPV----- 184
Query: 212 KLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
KL + PF +T +++ +L D T EE E V V ++ ++ + K GGA +
Sbjct: 185 KLQMQHQPFCITTSYYESGEVMLQDATLLEEHCREGEVVVSINRFGEVCQIAKYGGAPVD 244
Query: 270 YTSAVQDCIALTRQRVKELHQILE 293
S V +C ++ K L + ++
Sbjct: 245 GLS-VLNCTTAALEKAKWLDKFVK 267
>gi|226293456|gb|EEH48876.1| exosome complex exonuclease RRP45 [Paracoccidioides brasiliensis
Pb18]
Length = 300
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 122/255 (47%), Gaps = 20/255 (7%)
Query: 13 EMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTM 72
E+++ A R F L L ++IR D R+L + R +S G + G ++G T++
Sbjct: 4 EVDISANEREFILEA----LHKNIRLDGRALDQLRPLMVSFG---NECGHVKLQLGKTSV 56
Query: 73 LAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGM 132
+ I EV P E ++G ++ + + SP + G +E +A+ L I S
Sbjct: 57 VVRISAEVTKPHPERENDGIFTVVVELNDMASPAFKTGWQSEMETQLARILDRIIRRSNA 116
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVML 192
++ + L + GK W + D++ +D+DG L D+ L+ + A + ++P + +G++ +
Sbjct: 117 LDTESLCIAAGKNCWHIRADVHVIDSDGGLVDSCCLAIMTALLHFRLPEAIVREGRVTVF 176
Query: 193 PEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTVV 250
E++ + P+N L +P S T ++ I+ D S+EE++ E + +
Sbjct: 177 SPEERVPS----PLN-------LTKLPLSTTFNIYDEGRIIVLDAVSKEEAVSEGNLIIA 225
Query: 251 LDSSNQLVSLYKPGG 265
L+ + +L K G
Sbjct: 226 LNKTGELALYIKSDG 240
>gi|449270963|gb|EMC81600.1| Exosome complex exonuclease RRP42, partial [Columba livia]
Length = 257
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 116/248 (46%), Gaps = 19/248 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCAEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAEA-APVVAKQLSDTISSSGMINLKELSLVG 142
PDEG ++F + CS P GR E +A L SS ++LK L +
Sbjct: 73 KPDEG--YLEFFVD--CSANATPEFEGRGGEELGTEIANTLYRVFSSESSVDLKSLCINP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP K+ +L +E+ + E
Sbjct: 129 REHCWVIYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------KVHILEDEEGSKEIE 181
Query: 203 KEPVNKEKRKLTLGGIP--FSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
+ +L + +P +L+ I +++ + D T +EE+ + + + S L S+
Sbjct: 182 LSDDPYDCIRLNVDDVPCIVTLSKIGYRHVV--DATLQEEACSLASLLISVTSKGALTSM 239
Query: 261 YKPGGAVL 268
K G L
Sbjct: 240 KKMGKGSL 247
>gi|169783852|ref|XP_001826388.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Aspergillus oryzae RIB40]
gi|238493679|ref|XP_002378076.1| exosome complex endonuclease 2, putative [Aspergillus flavus
NRRL3357]
gi|83775132|dbj|BAE65255.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220696570|gb|EED52912.1| exosome complex endonuclease 2, putative [Aspergillus flavus
NRRL3357]
gi|391869452|gb|EIT78650.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp45 [Aspergillus
oryzae 3.042]
Length = 292
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 127/281 (45%), Gaps = 24/281 (8%)
Query: 24 PLRYFERH-----LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
PL ER L E +R D R + R +S G G ++G T+++ I
Sbjct: 6 PLSIAERDFILNALREDVRLDGRQADQFRPLNVSFG---EEYGHVKVQLGKTSLIVRISS 62
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
EV P + P +G +I + + SP GR + V+ L I S ++ + L
Sbjct: 63 EVTKPHDDRPFDGIFTIALELTAMGSPAWENGRQGDLETYVSNVLDRVIRHSNALDTESL 122
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
++ G + W V D++ + DG L DAA + +A + + P + DG++++ +
Sbjct: 123 CVLKGVSCWNVRADVHITNYDGNLIDAACIGVMAGLQHFRRPDAVVKDGQVIVYGVD--- 179
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLT--CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
E+ PV L + P S+T ++ D T +EE E V + L+++
Sbjct: 180 ---ERVPV-----ALNITHKPLSVTFHTFDEGKRVIVDATRKEEQASEADVVMGLNNAGD 231
Query: 257 LVSLYKPGGA-VLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+ L K G+ V A + +AL ++VKE++ I+++A+
Sbjct: 232 VCYLSKFSGSPVSAMVFVNKSSVAL--EKVKEINGIIDKAL 270
>gi|407461958|ref|YP_006773275.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045580|gb|AFS80333.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosopumilus koreensis AR1]
Length = 272
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 114/266 (42%), Gaps = 18/266 (6%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++S +D +R L E + R D R+L R+ +I A+ A+GSA ++G
Sbjct: 1 MTSHTVIDELKRNQILELLE----QGKRVDGRALDEVRDISIETNAIPKANGSARVRLGD 56
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T ++ +K++ P ++ D+G + P+ P V G P +A+ + I
Sbjct: 57 TEVVCGVKIQPDRPFPDTGDKGLFICTAELLPLSHPTVETGPPGPEVIELARVVDRGIRE 116
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189
S M+++ +L + K+ V+ D +D DG LFDA + AA + + P +
Sbjct: 117 SHMVDVSQLVIEKDKSVIGVFADNVVVDYDGNLFDACSYATTAALLSSKSPKWNW----- 171
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTV 249
N V E ++ + IP S+T +I+ DP +E M+ +T+
Sbjct: 172 ---------VNDAPALVEGEDTQVPITTIPVSVTMAKIGKHIIVDPNGDEWESMDARITI 222
Query: 250 VLDSSNQLVSLYKPGGAVLAYTSAVQ 275
DS + +L K G VQ
Sbjct: 223 TSDSDGNICALQKGGDDGFTQEEIVQ 248
>gi|321478855|gb|EFX89812.1| hypothetical protein DAPPUDRAFT_40604 [Daphnia pulex]
Length = 279
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 131/267 (49%), Gaps = 15/267 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+ E R D RSLS R T I+ G + G +G+T ++A + V P +EG
Sbjct: 18 VKEGQRVDGRSLSEQRKTCITFG---TEWGCCQVLLGNTRVMAQVSCSVQVPKSSRANEG 74
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ I+ M + + GR + V + + I S I+L+ L ++ + AW V +
Sbjct: 75 MLFINVEMSTMAAEHFEAGRLGQQGIEVNRLVERCIKDSRCIDLESLCILVEEQAWEVRV 134
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
DI+ L+ +G L DAA L+A+ A + + P V+LD +++ + E++PV
Sbjct: 135 DIHILNHEGNLIDAATLAALGALCHFKRPDVTLDGRDVII------HQLDERDPV----- 183
Query: 212 KLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAY 270
LT+ P +L+ + ++ + DPT+ EE + + + L++ +L +L G V +
Sbjct: 184 PLTILHHPLTLSFALFNQGICVLDPTNLEERSADGKLVMGLNAYRELCTLQISGDGVFIH 243
Query: 271 TSAVQDCIALTRQRVKELHQILEEAIS 297
AV C + R ++ ++L+++++
Sbjct: 244 KEAVISCANVAASRAVQMVEMLKKSLA 270
>gi|50546251|ref|XP_500645.1| YALI0B08514p [Yarrowia lipolytica]
gi|49646511|emb|CAG82887.1| YALI0B08514p [Yarrowia lipolytica CLIB122]
Length = 299
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 113/263 (42%), Gaps = 25/263 (9%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ L S R D RS+ R ++ G S G +G T ++ I E+ P+
Sbjct: 8 KFLTEALKVSKRLDGRSMEEQRPMEVTFG---SQFGHVELTMGKTKVVVRISAEITKPNE 64
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
P EG + + + SP+ +E ++++ + + SG ++L+ L +V GK
Sbjct: 65 RRPFEGIFVVHTDIGSMASPIFENNHQSEQEIMISQVVEKAVRRSGALDLESLCIVAGKK 124
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + D++ LD DG L DA + +A + + P V +D G + + E E+ P
Sbjct: 125 CWEIRADVHYLDFDGGLVDATCAAVMAGLYHFKKPDVDVDGGAVTVCDME------ERHP 178
Query: 206 VNKEKRKLTLGGIPFSLTCIL-----------HKNYILADPTSEEESIMETLVTVVLDSS 254
V L++ +P S+T L K + D T+ E + +T+ ++ +
Sbjct: 179 V-----ALSVLHLPVSVTYGLFELKNDETNEVEKVECVLDCTAIERQVQNAEITITINKN 233
Query: 255 NQLVSLYKPGGAVLAYTSAVQDC 277
+ + KP G + V+ C
Sbjct: 234 RDICQISKPSGVSIEGYRIVELC 256
>gi|193645775|ref|XP_001952675.1| PREDICTED: exosome complex exonuclease RRP42-like [Acyrthosiphon
pisum]
Length = 289
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 116/244 (47%), Gaps = 17/244 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E+ R D RS R + M V++A+GSA ++ ++ +L +K+E+ TP E
Sbjct: 13 YIIHGVEENFRCDGRSRQDYRPLELEMDIVSNANGSARLRLANSDILVCVKVEIDTPLPE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSD--TISSSGMINLKELSLVGGK 144
+P +G I++ + CS P +A +LS ++ + NL +L +V G+
Sbjct: 73 APKDG--KIEYFVD--CSANATPAFEGRGGEHLAAELSRFLCLAHGPVFNLSKLCIVPGQ 128
Query: 145 AAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTV--SLDDGKIVMLPEEQKEENSE 202
+ W +++D+ L+ G LFDA L+A AA N +P + + +DG+ + L
Sbjct: 129 SCWKLFVDVLILECGGNLFDAVSLAAKAALCNTSLPNIVGTYEDGQNIDL-------QIS 181
Query: 203 KEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
+P + + L +P ++ N +ADPT EEE + V + + ++ K
Sbjct: 182 DDPF--DTKPLEASDLPVLVSLCKIGNSYVADPTIEEEICGAGCIVVSVTPKGNVTAVLK 239
Query: 263 PGGA 266
G
Sbjct: 240 KGAG 243
>gi|322788559|gb|EFZ14187.1| hypothetical protein SINV_07329 [Solenopsis invicta]
Length = 292
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 121/246 (49%), Gaps = 25/246 (10%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTT-MLAAIKMEVMTPSLESPDEGCVS 94
+R D RS + R I + A GSA ++G+ T +L +K+E+ TP E P EG
Sbjct: 22 LRNDGRSKYQYRPLEIETKLMKHAHGSARLRVGNITDVLVGVKVEIDTPYAERPHEG--K 79
Query: 95 IDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTIS----SSGMINLKELSLVGGKAAWMVY 150
+DF + CS P + +A ++S+ +S + +LK+L ++ K W +Y
Sbjct: 80 LDFFVD--CSANATPAFEGKGGDDLATEISNVLSIAYQTPNAFDLKQLCIIPYKKCWKMY 137
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIP---TVSLDDGKIVMLPEEQKEENSEKEPVN 207
+DI L G LFDA + AA N +IP T +LD G+ P+ Q ++
Sbjct: 138 VDILILQCGGNLFDAVGAAVKAALYNTEIPRVITATLDGGE----PDIQVSDDP------ 187
Query: 208 KEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG-G 265
+ KL + P +T C + N+++ DPTSEEES + + + ++ S+ K G G
Sbjct: 188 YDCIKLDVTNYPLVVTVCKIGDNFVI-DPTSEEESCSTASILISAMPNGKVTSVVKLGYG 246
Query: 266 AVLAYT 271
++L T
Sbjct: 247 SLLPST 252
>gi|50290581|ref|XP_447723.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527034|emb|CAG60670.1| unnamed protein product [Candida glabrata]
Length = 303
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 115/261 (44%), Gaps = 29/261 (11%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + R D R L + R+ I G G ++G T + I ++ P + P EG
Sbjct: 19 LRQKQRLDGRRLDQFRDVQIEFG---KEYGDVTVRMGKTLVQCRISCQITEPYEDRPFEG 75
Query: 92 CVSIDFHMPPICSPLVRPGRP-AEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVY 150
I + P+ P G E + A+ + + SG ++++ L +V G W V
Sbjct: 76 LFVISTEISPMAGPQFENGNSTGEDEVLCARIIEKAVRRSGALDVEGLCIVAGSKCWAVR 135
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK 210
D++ L+ DG DA+ ++ +AA S+ + P +S+ +V+ P + E+EPV
Sbjct: 136 ADVHYLNCDGGFIDASCIAVMAALSHFRKPDISVHGEDVVVYPVD------EREPV---- 185
Query: 211 RKLTLGGIPFSLTCIL--------------HKNYILADPTSEEESIMETLVTVVLDSSNQ 256
L + IP +T + + D T++EE + + ++TV L+ + +
Sbjct: 186 -PLGILHIPICVTFSFFNPQDTEENIKGDSNAEISIIDATTKEELLRDGVLTVTLNKNRE 244
Query: 257 LVSLYKPGGAVLAYTSAVQDC 277
+V + K GG + +Q C
Sbjct: 245 VVQVSKAGGLPMDALQLMQCC 265
>gi|170084377|ref|XP_001873412.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650964|gb|EDR15204.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 284
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 121/267 (45%), Gaps = 20/267 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +S+R D R R+ TI+ G G +G T +LA ++ +++ P+ E P EG
Sbjct: 18 LKQSLRLDGRLPLEMRSPTITFGPDL---GWVECGLGKTRVLAQVEAKMVKPAPERPFEG 74
Query: 92 CVSIDFHMPPICSPLVRPGR--PAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMV 149
++I + P+ S PGR P++ + + L + S ++ + L ++ G+ W +
Sbjct: 75 TITIHSEISPMASSEYEPGRGRPSDEEVAITRMLDKVLKRSDAVDKESLCILAGQRVWHI 134
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKE 209
L ++ L G + D A L+ + A + + P V + ++++ P+++
Sbjct: 135 RLTLHFLADAGNMLDCACLAGITALRHFRRPDVEVVGDEVIV-----------HSPLDRA 183
Query: 210 KRKLTLGGIPFSLTCILHKNYI---LADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
L + PF T + + DP E+ + LV++ L++ ++ L K GG
Sbjct: 184 PVPLAIHHTPFCFTFAFFPDITTPPVLDPNQLEQRLSAGLVSIALNAQKEICVLQKLGGV 243
Query: 267 VLAYTSAVQDCIALTRQRVKELHQILE 293
L T V + + + KELH L+
Sbjct: 244 PLE-TEEVLSLVNVAVGKAKELHGFLD 269
>gi|254169471|ref|ZP_04876288.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
gi|197621577|gb|EDY34175.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
Length = 210
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 22/223 (9%)
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T +L +K+E TP ++P+ G ++ + + P+ SP PG P E A +A+ + I
Sbjct: 1 TRVLVGVKIEPGTPFPDTPNMGILTTNAELAPLASPTFEPGPPGEEAIELARVVDRGIRE 60
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189
I+L++L + G+ W+V++DI+ LD DG LFDAA A+AA +N +P D G+
Sbjct: 61 GHAIDLEKLVIEEGEKVWIVFIDIHVLDYDGNLFDAAGYGALAALTNAIVPASRYDLGED 120
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTV 249
LP + P +T ++I+ADP +EESI +TV
Sbjct: 121 FKLPVQH---------------------YPVPVTFAKIGDWIVADPNLDEESIASARLTV 159
Query: 250 VLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
+ ++ ++ K Y V+ I ++ ++ +I+
Sbjct: 160 ATNEEGKINAMQKGLSGTFTY-EEVKKVINMSMNIGGKVREII 201
>gi|389584933|dbj|GAB67664.1| exosome complex exonuclease, partial [Plasmodium cynomolgi strain
B]
Length = 280
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 124/283 (43%), Gaps = 18/283 (6%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
L+Y E + +IR D R+LS R I+ + SADGS+ ++ IK+ ++TPS
Sbjct: 4 LKYIENSINSNIRVDGRTLSTYRTIEINKNILVSADGSSSVMNEENNVICGIKLSLLTPS 63
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGK 144
L++PDEG +++ C V R + + + + I+ K+L ++ K
Sbjct: 64 LDAPDEGVINLQID----CPASVAANRIKKDHLQIMSSIIYDLCLKNNIDRKKLCILPSK 119
Query: 145 AAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTV----SLDDGKIVMLPEEQKEEN 200
W V + + L+A G L D ++ A + +P V +D+ K +
Sbjct: 120 FVWGVDISVMVLNAGGGLLDIISMAIYVALKDTIVPVVKAKRKIDESNTF---HHTKCAD 176
Query: 201 SEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
E E + +K +P ++ N + D + EE ++E + V + SS + V+
Sbjct: 177 YEVEIIENQKTNFPYENVPICVSIGEINNKYVYDMSKVEEELVENIFVVAVTSSGKCVAF 236
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILE---EAISGME 300
+K G + S + +T K H + E EAI+ ++
Sbjct: 237 HKLYGISMEIASILN----MTENSSKISHHLFEKINEAIAKIQ 275
>gi|170109350|ref|XP_001885882.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164639153|gb|EDR03426.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 282
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 118/265 (44%), Gaps = 18/265 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +S+R D R R TI+ G G +G T +LA ++ +++ P+ E P +G
Sbjct: 18 LKQSLRLDGRLSLEMRLPTITFG---PDFGWVECALGKTRVLAQVEAKMVKPAPERPFQG 74
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++I + P+ S PGRP++ + + L + S ++ + L ++ G+ W + L
Sbjct: 75 TITIHSEILPMASSEYEPGRPSDEEVTITRMLDKVLKRSDAVDKESLCILAGQRVWHIRL 134
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
++ L G + D A L+ + A + + P V + ++++ P ++
Sbjct: 135 TLHFLADAGNMLDCACLAGITALQHFRRPDVEVVGDEVIV-----------HSPWDRAPV 183
Query: 212 KLTLGGIPFSLTCILHKNYI---LADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
L + PF T + + DP E+ + V++ L++ ++ L K GG L
Sbjct: 184 PLAIHHTPFCFTFAFFPDITTPPVLDPNQLEQRLSAGFVSIALNAQKEICVLQKLGGVPL 243
Query: 269 AYTSAVQDCIALTRQRVKELHQILE 293
T V + + + KELH L+
Sbjct: 244 E-TEEVLTLVNVAVGKAKELHGFLD 267
>gi|340377723|ref|XP_003387378.1| PREDICTED: exosome complex component RRP42-like [Amphimedon
queenslandica]
Length = 281
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 115/248 (46%), Gaps = 8/248 (3%)
Query: 23 FPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMT 82
F + Y ++ + +R D RS R+ + G V++ GSA K+ T +L +K E+
Sbjct: 9 FEISYIKQGVLADMRSDGRSCRDYRSFELRSGIVSNTSGSAEIKLERTNILVGVKAEIGQ 68
Query: 83 PSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+ +P++G + + SP R + +A +LSD +S I+L+ LS++
Sbjct: 69 PNPLNPNKGRIEFFVDCSALASPKFEGRRGEDLGRNLAHRLSDLYENSNCIDLESLSIIP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
G+ W++Y+D L+ G + D ++ A +N +IP ++ V+ E++E
Sbjct: 129 GQDCWIIYVDALVLEYSGGVLDCLSIAVKGALANTKIPKLT------VIGEGEEQEIEIS 182
Query: 203 KEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
P + + +P ++ L N + D + EEE+ ++V ++ + S+ K
Sbjct: 183 DNPF--DSTSIDTNNVPVFVSLSLIGNQFIVDASHEEEACSLCQLSVGVNHKGSICSILK 240
Query: 263 PGGAVLAY 270
G +
Sbjct: 241 EGAGSFKH 248
>gi|313236425|emb|CBY11742.1| unnamed protein product [Oikopleura dioica]
Length = 288
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 129/268 (48%), Gaps = 10/268 (3%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
+++R D R+ + R + + + +GSA +IGST +L +K E+ SL D G +
Sbjct: 23 DNMRTDGRTCNDFRVIEMETSCIETTNGSARVRIGSTELLVGVKAELEKASLVDGDAGRI 82
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPV-VAKQLSDTISSSGMINLKELSLVGGKAAWMVYLD 152
P +P+ R E +A S + ++ K+L++V W++Y+D
Sbjct: 83 EFSVDCSPNATPMFEGRRGGEDIEAEIASLFSRFYKAEEFMDRKKLTVVPNAWCWVLYVD 142
Query: 153 IYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRK 212
I L+ G L DA+ ++ AA + ++P ++++ G E++ + +P++ E+
Sbjct: 143 ILILEVGGNLVDASSIAVKAALRDTRLPLLNIEKGD-----EDEYDIQVSDDPLDGEELD 197
Query: 213 LTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTS 272
+ P ++T + + DPT EEE++ + V ++ + + + + G L S
Sbjct: 198 IH---PPLTVTVAKLGHRYIVDPTDEEEAVTLANLIVSVNENGEARGMKQTGKGSLD-PS 253
Query: 273 AVQDCIALTRQRVKELHQILEEAISGME 300
++ + I++ ++ K LH+ + A+ E
Sbjct: 254 SILEMISIAKKAAKTLHRSVNRALLAAE 281
>gi|260950159|ref|XP_002619376.1| hypothetical protein CLUG_00535 [Clavispora lusitaniae ATCC 42720]
gi|238846948|gb|EEQ36412.1| hypothetical protein CLUG_00535 [Clavispora lusitaniae ATCC 42720]
Length = 305
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 128/285 (44%), Gaps = 30/285 (10%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y L + R D R+L R I++ G ++G T + + E+ P +
Sbjct: 14 YIFNALKKGFRLDGRALDEMRKPLITLSKTEY--GYVEVELGDTKLAVRVSCEIGKPFED 71
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P EG +I+ + + SP+ G+ ++ ++++ + + S ++L+ L ++ G+
Sbjct: 72 RPFEGTFTINTEISSMASPMFENGKNSDEEVLISRLIEKAVRRSNALDLESLCVIAGEKV 131
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W + DI L+ DG L DA+ + + A + + P VS+ + + + E++PV
Sbjct: 132 WHIRADINFLNYDGGLIDASCIGVMTALQHFKKPDVSIQGTDVTIYSFD------ERQPV 185
Query: 207 NKEKRKLTLGGIPFSLTC--------------ILHKNYILADPTSEEESIMETLVTVVLD 252
L++ +P +T L++ + D S+EE+I + + + ++
Sbjct: 186 -----PLSILHVPICVTYSFFNPGDKEENIKGALNQEIAIMDANSKEEAIRDGSLVITMN 240
Query: 253 SSNQLVSLYKPGGAVL---AYTSAVQDCIALTRQRVKELHQILEE 294
+ +L+ L K GG + A S Q+ A+ + ++ +L+E
Sbjct: 241 KNRELIQLSKNGGLPIDGVALLSLAQNSFAVAEKLTDQIKALLKE 285
>gi|440803698|gb|ELR24581.1| exosome component 7, putative [Acanthamoeba castellanii str. Neff]
Length = 263
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 123/263 (46%), Gaps = 35/263 (13%)
Query: 35 SIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVS 94
++R D RS R+ TI G +A+A+GSA K+ +T ++ +++++ P L+ P+EG
Sbjct: 19 NVRNDGRSRLDFRHFTIETGIIATANGSARLKLDNTDVMVGVRVDLAEPKLDRPNEGAED 78
Query: 95 IDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIY 154
+ + + L R + A ++ L ++ GK W +Y+D
Sbjct: 79 LAISITQV---LARSYKNA-------------------LDWTSLCVIPGKLVWAIYVDAL 116
Query: 155 CLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLT 214
LD +G +DA ++ AA N IP ++L+DG++ + + Q + +L
Sbjct: 117 VLDFEGNPYDAISIATRAALHNTMIPRITLEDGEVEVTDDPQ------------DCTRLD 164
Query: 215 LGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAV 274
+ +P ++T L D T EEE M V V + + S+ G + TS +
Sbjct: 165 VSNVPVTVTLTKIGTRFLVDATLEEEQCMGVRVIVGISPKGHVCSMQMTGHGAVEPTS-L 223
Query: 275 QDCIALTRQRVKELHQILEEAIS 297
+ I +++ +EL + L++A++
Sbjct: 224 YEMIQTSQKLGRELIEGLDKALA 246
>gi|190345706|gb|EDK37633.2| hypothetical protein PGUG_01731 [Meyerozyma guilliermondii ATCC
6260]
Length = 312
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 110/254 (43%), Gaps = 27/254 (10%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
RY L +R D R + R+ I + S G + G+T + + E+ P
Sbjct: 20 RYVLEALKHGVRGDGRRIDEIRDPKIILSP--SEYGYVEIEWGNTKLAVRVSAEIAKPYD 77
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P EG +I+ + P+ SP G+ ++ +V++ + I S ++L+ L +V G
Sbjct: 78 DRPFEGIFTINTEISPMASPQFENGKNSDDEVLVSRIVEKAIRRSNALDLESLCIVAGSK 137
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W V D+ LD DG L DA L + A + + P VS+D IV+ E++P
Sbjct: 138 VWAVRADVNFLDFDGGLIDACALGVMVALQHFRKPDVSIDGESIVV------HSMDERQP 191
Query: 206 VNKEKRKLTLGGIPFSLTCILHK--------------NYILADPTSEEESIMETLVTVVL 251
V L++ +P ++ + D T EEE + + + V L
Sbjct: 192 V-----ALSILHVPLCVSFSFFNPSDIEETVKGDASDEIAVMDATHEEELVRDGSLVVTL 246
Query: 252 DSSNQLVSLYKPGG 265
+ + +++ + K GG
Sbjct: 247 NKNREILQVSKSGG 260
>gi|357618708|gb|EHJ71589.1| hypothetical protein KGM_20827 [Danaus plexippus]
Length = 371
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 120/259 (46%), Gaps = 26/259 (10%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
+ ++ ++E R D R + +R IS G S GS + +G T +LA + EV+ P
Sbjct: 12 NFIQKIISEGHRLDGRIYNESRKLDISYG---SEYGSCIVSLGETKILAQVSCEVVQPKQ 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
P+EG + I+ + P+ +P R + + + L S I+L+ L +V +
Sbjct: 69 IRPNEGILFINVEISPMAAPQFEANRQTDLTVYLNRLLEKCYKDSKCIDLESLCIVVEEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +DI L+ DG L + A ++ +A+ ++ + P V+ I++ SEK+P
Sbjct: 129 VWSLRVDIKVLNHDGNLIECASIATLASLAHFKRPDVTRSGDSIII------HTLSEKDP 182
Query: 206 VNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMET---------LVTVVLDSSN 255
+ L P +T I + N +++DP+ EES+ + L+ V ++
Sbjct: 183 I-----PTVLYHYPVCVTFAIFNNNILVSDPSFIEESVCTSNSEEGSTGGLLVVGMNQYK 237
Query: 256 QLVSLYKPGGAVLAYTSAV 274
+L L G A+ Y S V
Sbjct: 238 ELCVLNLSGAAI--YNSNV 254
>gi|355686807|gb|AER98193.1| exosome component 7 [Mustela putorius furo]
Length = 291
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 131/280 (46%), Gaps = 20/280 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
PDEG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 73 KPDEG--YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKSLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ DG LFD ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWILYVDVLLLECDGNLFDTICIAVKAALFNTRIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S+ + +
Sbjct: 182 LSDDPYDCIRLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSTGVVTCMR 240
Query: 262 KPGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAISGME 300
K G L S + + T +RV K LH L+ + E
Sbjct: 241 KVGKGSLDPESIFE--MMETGKRVGKVLHASLQSVLHKEE 278
>gi|403214419|emb|CCK68920.1| hypothetical protein KNAG_0B04860 [Kazachstania naganishii CBS
8797]
Length = 307
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 109/244 (44%), Gaps = 29/244 (11%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R+ R+ +I G + G L +G T + I EV P + P EG I
Sbjct: 24 RLDGRNFDEFRDVSIVFG---NEYGDVLVSLGGTKVHCRISCEVTLPYEDRPFEGLFLIS 80
Query: 97 FHMPPICSPLVRPGR-PAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYC 155
P+ G E ++A+ + + SG ++++ L +V G W + D++
Sbjct: 81 TEFTPMAGGQFENGNSTGEDEVLIARIIEKAVRRSGALDVEGLCIVAGSKCWAIRADVHF 140
Query: 156 LDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTL 215
LD DG DA+ ++ +AA + + P +++ +V+ P E E+EPV L +
Sbjct: 141 LDCDGGFIDASCIAVMAALMHFKKPDITVQGHSVVVHPVE------EREPV-----PLGI 189
Query: 216 GGIPFSLTCILHK------NY--------ILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+P +T N+ ++ D T +EE + E ++TV L+ + ++V +
Sbjct: 190 LHVPICVTFSFFNPQDSETNFKGQDNLEIVVTDATLKEELLREGVLTVTLNKNREVVQVS 249
Query: 262 KPGG 265
K GG
Sbjct: 250 KAGG 253
>gi|290990431|ref|XP_002677840.1| 3' exoribonuclease domain-containing protein [Naegleria gruberi]
gi|284091449|gb|EFC45096.1| 3' exoribonuclease domain-containing protein [Naegleria gruberi]
Length = 367
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 130/278 (46%), Gaps = 27/278 (9%)
Query: 36 IRPDARSLSRARNTTISM----GAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+R D R L R+ S+ +A G +G+T L + +M P ++ P+EG
Sbjct: 58 LRIDGRDLYDYRSIEFSLPTSSQELAVPSGQVQVTLGNTIALGIVSCSIMEPYMDRPNEG 117
Query: 92 CVS--IDFHM---PPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
++ IDF PI + R E + + + ++ S I+ + L ++ G+
Sbjct: 118 FLTFQIDFSTVGSRPIGTKQTSQQR--ELCIEIGRVIDRSLRGSRSIDTEALCIIAGRKV 175
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W + +D++ L DG +FD L+AVAA + + P V+++ ++V+ +++PV
Sbjct: 176 WSLRVDVHILQDDGNVFDCCHLAAVAALLHFKRPEVTIEGDRVVV------HTVQDRQPV 229
Query: 207 NKEKRKLTLGGIPF--SLTCILHKNYIL--ADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
L++ IP S + H + L DP +EE I E +T+ L++ +L ++ K
Sbjct: 230 -----PLSVHHIPICTSFSFFDHDSATLFVVDPCKKEEMIAEGFMTIALNAHKELCAIQK 284
Query: 263 PGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
GG L + +C + + KE+ + L++ + E
Sbjct: 285 GGGLALT-KDQILECAQIGSVKSKEITETLKQFLQAEE 321
>gi|119480721|ref|XP_001260389.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
gi|119408543|gb|EAW18492.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
Length = 292
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 123/268 (45%), Gaps = 19/268 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E +R D R + R T++ G G ++G T+++ I EV P + P +G
Sbjct: 19 LREDVRLDGRHADQLRPLTVTFG---EEYGHVKVQLGKTSLIVRISSEVTKPRDDRPFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + + SP GR + VA L + S ++ + L ++ G + W +
Sbjct: 76 IFTIALELTAMGSPAWDNGRQGDLEAYVAHVLDRLVRHSNALDTESLCILKGVSCWSIRA 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ D DG L DAA + +A + + P + DG++V+ + E+ PV
Sbjct: 136 DVHVTDYDGNLIDAACIGVMAGLQHFRRPDAVVKDGQVVVYGLD------ERVPV----- 184
Query: 212 KLTLGGIPFSLT--CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA-VL 268
L + P S+T ++ D T +EE E V ++++ + + K G+ V
Sbjct: 185 PLNITHKPLSVTFHTFDEGKRVILDATRKEEQASEADVVFGMNNAGDVCFVSKFSGSPVD 244
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAI 296
A + +AL ++VKE++ I+++A+
Sbjct: 245 ALVFVSKSSVAL--EKVKEINAIIDKAL 270
>gi|313221392|emb|CBY32145.1| unnamed protein product [Oikopleura dioica]
Length = 288
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 129/268 (48%), Gaps = 10/268 (3%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
+++R D R+ + R + + + +GSA +IGST +L +K E+ SL D G +
Sbjct: 23 DNMRTDGRTCNDFRVIEMETSCIETTNGSARVRIGSTELLVGVKAELEKASLVDGDAGRI 82
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPV-VAKQLSDTISSSGMINLKELSLVGGKAAWMVYLD 152
P +P+ R E +A S + ++ K+L++V W++Y+D
Sbjct: 83 EFSVDCSPNATPMFEGRRGGEDIEAEIASLFSRFYKAEEFMDRKKLTVVPNAWCWVLYVD 142
Query: 153 IYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRK 212
I L+ G L DA+ ++ AA + ++P ++++ G E++ + +P++ E+
Sbjct: 143 ILILEVGGNLVDASSIAVKAALRDTRLPLLNIEKGD-----EDEFDIQVSDDPLDGEELD 197
Query: 213 LTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTS 272
+ P ++T + + DPT EEE++ + V ++ + + + + G L S
Sbjct: 198 IH---PPLTVTVAKLGHRYIVDPTDEEEAVTLANLIVSVNENGEARGMKQTGKGSLD-PS 253
Query: 273 AVQDCIALTRQRVKELHQILEEAISGME 300
++ + I++ ++ K LH+ + A+ E
Sbjct: 254 SILEMISIAKKAAKTLHRSVNRALLAAE 281
>gi|118371223|ref|XP_001018811.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila]
gi|89300578|gb|EAR98566.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila SB210]
Length = 776
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 122/275 (44%), Gaps = 31/275 (11%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L IR D R L +RN + G G IG T ++ E++ P E P+EG
Sbjct: 461 LENEIRLDGRKLMDSRNIKVIFGNNV---GEIEVLIGDTHIITKTTAEIIQPKQEKPNEG 517
Query: 92 CVSIDFHMPPICSPLVRPGRP-----AEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+ + + S + +P + + + K L I S I+++ L +V K
Sbjct: 518 SLKFNVDL----SSMQDEQQPNNVNIKKYSNEIQKLLEKIIKGSKAIDMESLCIVTNKRV 573
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W + +D + G L DA LS + + + + P VS++ + + ++EK P
Sbjct: 574 WSINVDSSVVSNGGNLIDAIYLSVIISLLHFRKPYVSVEQQSNIKI-------HTEKNP- 625
Query: 207 NKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+ L++ IP T K +++DP EE IME +T+ ++ N + +++KPG
Sbjct: 626 ----QPLSIHHIPIPFTFAFFKKSTLLVSDPLVLEEQIMEGRLTISVNIYNDVCNIHKPG 681
Query: 265 GA-----VLAYTSAVQDCIALTRQRVKELHQILEE 294
GA ++ V+ C+ +Q + QIL+E
Sbjct: 682 GAPIKLELINKQMLVEVCLNKIKQMTDFVRQILKE 716
>gi|254572173|ref|XP_002493196.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|238032994|emb|CAY71017.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|328352789|emb|CCA39187.1| exosome complex component RRP45 [Komagataella pastoris CBS 7435]
Length = 298
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 125/272 (45%), Gaps = 32/272 (11%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ + L E +R D R + R I +G G L +G ++ I E++TP
Sbjct: 7 QFLLKALEEGLRLDGRKPMQMRPLNIEVGPDY---GQMLVTLGDAKVVVRISSEIVTPYE 63
Query: 86 ESPDEGCVSIDFHMPPICSP-LVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGK 144
+ P EG + + + P E ++++ + I S ++L+ L ++ G+
Sbjct: 64 DRPFEGIFQVSSELDGMGHPSFNEASHRQEEEVMLSRLIEKAIRRSNALDLESLCIIAGQ 123
Query: 145 AAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKE 204
W V D++ +D DG + D + +A + + P +S+ +G +++ + SE+E
Sbjct: 124 KCWSVRADVHIIDYDGNMTDIVCIGVIAGLLHFKKPDISIRNGTVIL------HDMSERE 177
Query: 205 PVNKEKRKLTLGGIPFSLTCILH-------------KNYILADPTSEEESIMETLVTVVL 251
PV L++ IP +T ++ + +++ D T +EE++ + +T+ L
Sbjct: 178 PV-----PLSVLHIPICVTFQIYSSGSMEDNVKGDGREFVIVDATLKEEALTQGTITLTL 232
Query: 252 DSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQ 283
+S+ +L + K GG L V + ++LT +
Sbjct: 233 NSNKELCQMSKSGGINL----EVDEILSLTNE 260
>gi|345091073|ref|NP_001230753.1| exosome component 7 [Sus scrofa]
Length = 291
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 116/247 (46%), Gaps = 17/247 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR E +A L ++ G I+LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSANATPEFEGRGGDELGTEIANTLYRIFNNKGSIDLKSLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L + +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCIQLNVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVAVTSKGVVTCMR 240
Query: 262 KPGGAVL 268
K G L
Sbjct: 241 KVGKGSL 247
>gi|146420206|ref|XP_001486060.1| hypothetical protein PGUG_01731 [Meyerozyma guilliermondii ATCC
6260]
Length = 312
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 110/254 (43%), Gaps = 27/254 (10%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
RY L +R D R + R+ I + S G + G+T + + E+ P
Sbjct: 20 RYVLEALKHGVRGDGRRIDEIRDPKIILSP--SEYGYVEIEWGNTKLAVRVLAEIAKPYD 77
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P EG +I+ + P+ SP G+ ++ +V++ + I S ++L+ L +V G
Sbjct: 78 DRPFEGIFTINTEISPMASPQFENGKNSDDEVLVSRIVEKAIRRSNALDLESLCIVAGSK 137
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W V D+ LD DG L DA L + A + + P VS+D IV+ E++P
Sbjct: 138 VWAVRADVNFLDFDGGLIDACALGVMVALQHFRKPDVSIDGESIVV------HSMDERQP 191
Query: 206 VNKEKRKLTLGGIPFSLTCILHK--------------NYILADPTSEEESIMETLVTVVL 251
V L++ +P ++ + D T EEE + + + V L
Sbjct: 192 V-----ALSILHVPLCVSFSFFNPSDIEETVKGDASDEIAVMDATHEEELVRDGSLVVTL 246
Query: 252 DSSNQLVSLYKPGG 265
+ + +++ + K GG
Sbjct: 247 NKNREILQVSKSGG 260
>gi|425766655|gb|EKV05258.1| Exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Penicillium digitatum Pd1]
gi|425775306|gb|EKV13584.1| Exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Penicillium digitatum PHI26]
Length = 324
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 128/289 (44%), Gaps = 21/289 (7%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
+S E ++ R F L L E++R D R R IS G G ++G
Sbjct: 28 MSKEAQLSIAEREFILEA----LRENVRLDGRQPDDYRPLNISFG---EEYGHVKLQLGK 80
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T ++ I EV P + P +G +I+ + + SP GR + L I
Sbjct: 81 TNLIVRISAEVTKPREDRPFDGLFNINLELSAMGSPAWENGRTNDIEAYATNALDRIIRH 140
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189
S ++ + L ++ G + W + DI+ +D DG + DAA ++ +A + + P + DG++
Sbjct: 141 SNALDTESLCILKGVSCWSIRADIHIIDYDGNITDAACIAIMAGLQHFRRPDAVVRDGRV 200
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLT--CILHKNYILADPTSEEESIMETLV 247
++ EQ + PV L + P S+T +++ D T +EE E +
Sbjct: 201 IVYGVEQ------RVPV-----ALNITHKPLSVTFHTFNESKHVIVDATLKEEQAAEGDL 249
Query: 248 TVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+ ++S+ + L K GA A + + + ++VKE++ +E+ +
Sbjct: 250 VIGINSAGDVCYLSKYAGAP-ADAMVIVNKTNVAWEKVKEINAAVEKVL 297
>gi|392572304|gb|EIW65456.1| hypothetical protein TREMEDRAFT_70580 [Tremella mesenterica DSM
1558]
Length = 281
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 127/278 (45%), Gaps = 21/278 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + L+E R D R R + GA G ++G T +LA + ++ P +
Sbjct: 14 FVLKALSEGKRLDGRLPLEMREIELEFGAEL---GCCQCRLGKTAVLAQVTATIVKPRDD 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P EG + I+ + P+ S GR +E ++ + L +I + ++ + L ++ G
Sbjct: 71 RPYEGSLLINSEISPMASTAYENGRSSEDELIITRMLEKSIRRTEAVDREALCIIAGDKV 130
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS-LDDGKIVMLPEEQKEENSEKEP 205
W + L ++ L G L D A L+++AA + + P + + D I+ PEE + P
Sbjct: 131 WQLRLTLHFLSDSGNLLDCASLASMAALRHFRKPEIEVIGDEVIIHSPEE-------RAP 183
Query: 206 VNKEKRKLTLGGIPFSLTCILHKNYI-LADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
V L++ +P +T +N + DPT EE + +++ L++ ++ L K G
Sbjct: 184 V-----PLSMHHVPLCVTFAYFENLPPILDPTHLEECLCTGTLSITLNAQREICVLSKAG 238
Query: 265 GAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
G+ L A + + + R V ++ Q++ +E D
Sbjct: 239 GSAL----AANEMMGVIRVGVDQVRQMVATVDKALEKD 272
>gi|198424385|ref|XP_002127184.1| PREDICTED: similar to Exosome complex exonuclease RRP42 (Ribosomal
RNA-processing protein 42) (Exosome component 7) (p8)
[Ciona intestinalis]
Length = 290
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 131/274 (47%), Gaps = 17/274 (6%)
Query: 26 RYFERH-LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
++F H + + +R D RS R+ + G V++ GS+ ++GS+ +L +K+E+ +P
Sbjct: 11 KWFIIHGIQDDMRNDGRSCEDYRHIEVETGVVSNTHGSSRLRLGSSELLVGVKVELGSPD 70
Query: 85 LESPDEGCVSIDFHMPPICSPLVRP---GRPAEA-APVVAKQLSDTISSSGMINLKELSL 140
++P+EG I FH+ CSP P GR E + ++ L+ + I+L L +
Sbjct: 71 PKAPNEGL--IHFHVD--CSPNADPSFQGRGGEDLSANISCILTRIYCNKSSIDLNTLGI 126
Query: 141 VGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEEN 200
+ K W+V++D+ L+ G L DA ++ AA N +P + + DG +E +E
Sbjct: 127 IPHKQCWVVHVDVLILECGGNLLDAVSIAVKAALHNTGVPNIQVTDG------DEGTQEI 180
Query: 201 SEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
S + N K T+ P +T + + D +SEEE + + + + +
Sbjct: 181 SLPDDPNDVKFINTVNA-PVLVTISKVGSRHVVDASSEEELCCNASLVMGVTKRGRTTGM 239
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEE 294
K GG L S + + I + ++LH L++
Sbjct: 240 RKMGGGSLDPES-IPEMIETGKNIGRQLHISLDK 272
>gi|403268453|ref|XP_003926289.1| PREDICTED: exosome complex component RRP42 [Saimiri boliviensis
boliviensis]
Length = 291
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 132/280 (47%), Gaps = 20/280 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIMHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI----SSSGMINLKELSLVG 142
P+EG ++F + CS P + ++++T+ ++ ++LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSANATPDFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ DG LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECDGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + L
Sbjct: 182 LSDDPYDCIRLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCLR 240
Query: 262 KPGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAISGME 300
K G L S + + T +RV K LH L+ + E
Sbjct: 241 KVGKGSLDPESIFE--MMETSKRVGKVLHASLQSVLHKEE 278
>gi|300121304|emb|CBK21684.2| unnamed protein product [Blastocystis hominis]
Length = 273
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 131/265 (49%), Gaps = 16/265 (6%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E IR D R+L+ R+ I + S S++ IG T + A E+++ + P+EG
Sbjct: 18 EGIRVDGRNLTEFRDIAIDLSRTDS-QSSSIVSIGDTKVCAITNCEIVSGYSDHPNEGLF 76
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDI 153
+I ++ P+ + + + L ++ + ++++ L ++ G+ + V+ +
Sbjct: 77 TIHVNVTPMGGREYTTELSDDVRFELQRVLERSLKDNNTVDVESLCIIPGEKVFSVHCYV 136
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQKEENSEKEPVNKEKRK 212
+D +G +FDAA+L+A ++ + P S++ ++ + P EQ EPV
Sbjct: 137 NIIDNNGNIFDAAVLAATSSLCYFRRPDYSINGTQVRIYAPNEQ-------EPV-----P 184
Query: 213 LTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
L L P S++ C+L L DP EE++ E ++++VL++ +L ++ GG ++
Sbjct: 185 LCLHYQPISISFCLLDSELTLLDPNEREEAVKEGMISLVLNAFGELCGVHFLGGIPVS-E 243
Query: 272 SAVQDCIALTRQRVKELHQILEEAI 296
S + C + + ++ IL++A+
Sbjct: 244 SLLLRCGQIASAKANDISAILKKAL 268
>gi|121698408|ref|XP_001267812.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
gi|119395954|gb|EAW06386.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
Length = 292
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 127/282 (45%), Gaps = 24/282 (8%)
Query: 24 PLRYFERH-----LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
PL ER L E +R D R + R ++ G G ++G T+++ I
Sbjct: 6 PLSIAERDFILNALREDVRLDGRQADQLRPLKVTFG---EEYGHVKVQLGKTSLIVRISS 62
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
EV P + P +G +I + + SP GR + VA L + S ++ + L
Sbjct: 63 EVTKPRDDRPFDGLFAIALELTAMGSPAWDNGRQGDLEAYVAHVLDRVVRHSNALDTESL 122
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
++ G + W + DI+ D DG L DAA + +A + + P + DG++++ +
Sbjct: 123 CILKGVSCWSIRADIHITDYDGNLIDAACIGVMAGLQHFRRPDAVVKDGQVIVYGLD--- 179
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLT--CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
E+ PV L + P S+T ++ D T +EE E V + ++++
Sbjct: 180 ---ERVPV-----PLNITHKPLSVTFHTFDEGKRVILDATRKEEQASEADVVIGVNNAGD 231
Query: 257 LVSLYKPGGA-VLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
+ + K G+ V A + +AL ++VKE++ I+++A+
Sbjct: 232 VCFVSKFSGSPVDALVFVTKSSVAL--EKVKEINGIIDKALQ 271
>gi|221058609|ref|XP_002259950.1| exoribonuclease PH [Plasmodium knowlesi strain H]
gi|193810023|emb|CAQ41217.1| exoribonuclease PH, putative [Plasmodium knowlesi strain H]
Length = 281
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 119/274 (43%), Gaps = 15/274 (5%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
L+Y E + +IR D R+LS R I+ + SADGS+ ++ IK+ ++TPS
Sbjct: 4 LKYIENSINSNIRVDGRTLSTYRTIEINKNILVSADGSSSVMNEENNVICGIKLSLLTPS 63
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGK 144
L++PDEG +++ C V R + + + + I+ K+L ++ K
Sbjct: 64 LDAPDEGVINLQID----CPASVAANRIKKDHLQIMSSIIYDLCLKNNIDRKKLCILPSK 119
Query: 145 AAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTV----SLDDGKIVMLPEEQKEEN 200
W V + + L+A G L D ++ A + +P V +D+ K +
Sbjct: 120 FVWGVDISVMVLNAGGGLLDIISMAIYVALKDTVVPVVKPKRKIDESNTF---HHTKCAD 176
Query: 201 SEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
+ E V +K +P ++ N + D + EE ++E + V + SS + V+
Sbjct: 177 YQIEIVENQKTDFPYENVPICVSIGEINNKYVYDMSKVEEELVENIFVVAVTSSGKCVAF 236
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEE 294
+K G + S + +T K H + E+
Sbjct: 237 HKLYGISMEIASILN----MTENSSKISHHLFEK 266
>gi|332020945|gb|EGI61339.1| Exosome complex exonuclease RRP42 [Acromyrmex echinatior]
Length = 292
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 131/275 (47%), Gaps = 30/275 (10%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTT-MLAAIKMEVMTPSLESPDEGCVS 94
+R D RS + R I + GSA +IG+ T +L +K+E+ TP E P+EG
Sbjct: 22 LRNDGRSRYQYRPIEIETKLMKHTHGSARLRIGNITDVLVGVKLEIDTPYAERPEEG--K 79
Query: 95 IDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTIS----SSGMINLKELSLVGGKAAWMVY 150
++F + CS P + +A ++S+ +S + +LK+L ++ + W +Y
Sbjct: 80 LEFFVD--CSANATPAFEGKGGDDLATEISNVLSMAYQTPDAFDLKQLCIIPHQKCWKIY 137
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTV---SLDDGKIVMLPEEQKEENSEKEPVN 207
+DI L G LFDA + AA N +IP V LD G+ P+ Q ++
Sbjct: 138 VDILILQCGGNLFDAVGAAVKAALYNTEIPRVIIAILDGGE----PDIQISDDP------ 187
Query: 208 KEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
+ KL + P LT C + N+++ DPTSEEES + + + + ++ S+ K
Sbjct: 188 YDCIKLDVTNYPVVLTVCKIGDNFVI-DPTSEEESCSTASILMSVMPNGKVTSVVK---- 242
Query: 267 VLAYTSAVQDCIALTRQRVKELHQILEEAI-SGME 300
L Y S + + Q K++ L EA+ G+E
Sbjct: 243 -LGYGSLLPSTLIKMLQVGKDISFKLNEALMKGLE 276
>gi|324518003|gb|ADY46978.1| Exosome complex exonuclease RRP43 [Ascaris suum]
Length = 277
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 119/257 (46%), Gaps = 25/257 (9%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTML 73
M VD + PL Y+ + L ES+ PD RS+ R ++ MG SA GS +++ G +
Sbjct: 1 MSVDLLKICDPLAYYSQFLFESVYPDGRSIGSFRPISLQMGVTQSAAGSCVSRQGGAMVT 60
Query: 74 AAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMI 133
A I+ P L + + + P I + + P R E A V+ +QL I
Sbjct: 61 ARIE-----PFLAVRSDDSIIV----PHIDAAPIIPQRVVEDAEVLLRQL---IEEEAFF 108
Query: 134 NLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLP 193
+L G+ W+++L I L+ DG L D + AF +LQ+P V++D
Sbjct: 109 KRDQLVTANGRLMWILHLHIAILNLDGCLLDTLVTCVTGAFLDLQLPKVNVD-------L 161
Query: 194 EEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL------HKNYILADPTSEEESIMETLV 247
+E N + ++++ ++L +P T I+ +K +L DP ++ ++ +
Sbjct: 162 DEDITVNINEAVLSEQSEHISLADLPVLSTFIVLDAHIPNKAKVLCDPVADLFDLLTSSA 221
Query: 248 TVVLDSSNQLVSLYKPG 264
++V+ ++ ++ + G
Sbjct: 222 SIVIGNNARVYRMTIHG 238
>gi|403220409|dbj|BAM38542.1| exosome complex exonuclease [Theileria orientalis strain Shintoku]
Length = 296
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 121/268 (45%), Gaps = 19/268 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + +R D RSL R+ +I + GS G+T + I E++ P+ E P+EG
Sbjct: 28 LKKGLRIDGRSLDSHRHVSIEFNG---SPGSVTISFGNTVVFCCISQEIVEPNFERPNEG 84
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ + + P S PG+ +++ + L + S ++L+ L + GK W + +
Sbjct: 85 FLYFNVELSPFTSENYDPGKTSDSENNLIYFLENIFKESSFLDLETLCVKSGKEVWALRV 144
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
++ L DG L A +A+A+ S + P + +E +E + +
Sbjct: 145 YVHVLQDDGNLLGACSFAALASLSQYRKPNL-----------QESEEFTYSSYMLWHKGV 193
Query: 212 KLTLGGIPFSLTCIL---HKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
L++ +P +T + Y+L D + EE I+ T ++++ + ++ YK G +
Sbjct: 194 PLSIYNMPIMMTVSIMEGQDQYVL-DANAFEEKILNTQISILYNQFGEVFWTYKYGSTPV 252
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAI 296
+ +++++ + +L+ +L+ +
Sbjct: 253 G-LETFEGAVSVSKNKAIKLYSLLKHEL 279
>gi|386876626|ref|ZP_10118725.1| 3' exoribonuclease family, domain 1 [Candidatus Nitrosopumilus
salaria BD31]
gi|386805588|gb|EIJ65108.1| 3' exoribonuclease family, domain 1 [Candidatus Nitrosopumilus
salaria BD31]
Length = 272
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 106/233 (45%), Gaps = 14/233 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + R D R+L R +I A+ A+GSA ++G T ++ +K++ P + D+G
Sbjct: 19 LEQGKRVDGRALDEPREISIETNAIPKANGSARVRLGETEVICGVKIQPDRPFPDMGDKG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ P+ P V G P +A+ + I S MI++ +L + K+ V+
Sbjct: 79 IFICTAELLPLSHPTVETGPPGPDVIELARVVDRGIRESHMIDVSQLVIEPNKSVVGVFA 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D +D DG LFDA +A AA + + P + D + V E
Sbjct: 139 DNVVVDYDGNLFDACSYAATAALLSSKSPKWNWVDDAPTL--------------VEGEDM 184
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+ + IP S+T ++I+ DP +E + M+ +T+ DS+ + +L K G
Sbjct: 185 PVPIATIPVSVTMGKIGSHIIVDPNGDEWASMDARITITSDSNGNICALQKGG 237
>gi|289740851|gb|ADD19173.1| exosomal 3'-5' exoribonuclease complex subunit Rrp45 [Glossina
morsitans morsitans]
Length = 404
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 129/273 (47%), Gaps = 20/273 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+ ++ R D R+ R+ I+ G S GS + +G T +L + E+ P P+EG
Sbjct: 18 IKQNQRLDGRNNDEFRSLRINYG---SDWGSVIVALGETKVLGQVSSELGEPKATRPNEG 74
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ I+ + P+ + GR E + + L T S I+L+ L ++ + WM+ +
Sbjct: 75 ILHINVELGPMAAAHFEAGRNCELTVQINRTLERTFKDSRAIDLESLCVISEERVWMLRV 134
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D+ L+ +G L D ++ + A ++ + P VS+ + +I + ++EKEP+
Sbjct: 135 DLNVLNHEGNLIDCCSVATLCALAHFRRPDVSVIEDEIRI------HTSAEKEPL----- 183
Query: 212 KLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
K+ + P ++ ++ +ADPT EE I +T + ++S +L L GG+ L
Sbjct: 184 KMVMHHYPVCVSYVIFDGGRIAVADPTVAEERISDTQMIFGINSFGELCCL-NLGGSSLT 242
Query: 270 YTSAVQDCIALTRQRVKELHQILEEAISGMEID 302
+ + C +++ K ++++ +E D
Sbjct: 243 SPTLLLQC---SKKAAKHAKSVVKQVKQSLEND 272
>gi|367014585|ref|XP_003681792.1| hypothetical protein TDEL_0E03380 [Torulaspora delbrueckii]
gi|359749453|emb|CCE92581.1| hypothetical protein TDEL_0E03380 [Torulaspora delbrueckii]
Length = 305
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 116/261 (44%), Gaps = 29/261 (11%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L ++ R D RS + R+ IS G G K+G+T + I ++ P + P EG
Sbjct: 19 LKQNGRLDGRSFDQFRDVEISFG---REYGDVTVKMGNTKVQCRISCQIAQPYEDRPFEG 75
Query: 92 CVSIDFHMPPICSPLVRPGR-PAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVY 150
I P+ P G E + A+ + + SG ++++ L +V G W V
Sbjct: 76 LFLISTESSPMAGPQFENGNNTGEDEVLCARIIEKAVRRSGALDVEGLCIVAGSKCWAVR 135
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK 210
D++ LD DG DA+ ++ + A + + P +S+ ++ + P + E+EPV+
Sbjct: 136 ADVHFLDCDGGFIDASCVAVMTALLHFKKPDISVLGDRVTVHPVD------EREPVS--- 186
Query: 211 RKLTLGGIPFSLTCIL--------------HKNYILADPTSEEESIMETLVTVVLDSSNQ 256
L + IP +T + + D T +EE + + +TV L+ + +
Sbjct: 187 --LGILHIPICVTFSFFNPQDTEENIKGDSNSEIAIIDATLKEELLRDGTLTVTLNKNRE 244
Query: 257 LVSLYKPGGAVLAYTSAVQDC 277
+V + K GG + S +++C
Sbjct: 245 VVQVSKAGGLPMDALSLMENC 265
>gi|115443084|ref|XP_001218349.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188218|gb|EAU29918.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 294
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 129/282 (45%), Gaps = 24/282 (8%)
Query: 24 PLRYFERH-----LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGST--TMLAAI 76
PL ER L +++R D R + R T+S G G ++G T +++ I
Sbjct: 6 PLSVAERDFILNALRQNVRLDGREPDQLRPLTVSFG---EEYGHVKVQLGKTRVSLIVRI 62
Query: 77 KMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLK 136
EV P + P +G +I + + SP GR + V L + S ++ +
Sbjct: 63 SSEVTKPRDDRPFDGIFTIALELTAMGSPAWDNGRQGDLETYVTNVLDRVVRHSNALDTE 122
Query: 137 ELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQ 196
L ++ G + W V D++ D DG L DAA + +A + + P + DG++++ +
Sbjct: 123 SLCILKGVSCWSVRADVHITDYDGNLIDAACIGVMAGLQHFRRPDAVVKDGQVIVYGVD- 181
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLT--CILHKNYILADPTSEEESIMETLVTVVLDSS 254
E+ PV L + P S+T N+++ D T +EE E V + ++++
Sbjct: 182 -----ERVPV-----ALNITHKPLSVTFHTFDEGNHVVLDATRKEEQASEADVIIGMNNA 231
Query: 255 NQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+ + K G+ + V+ A+ + +VKE++ I+++A+
Sbjct: 232 GDVCYMSKFSGSPVDAMVFVRKS-AVAQDKVKEINGIIDKAL 272
>gi|347829018|emb|CCD44715.1| similar to 3' exoribonuclease family protein [Botryotinia
fuckeliana]
Length = 344
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 146/340 (42%), Gaps = 75/340 (22%)
Query: 17 DAFRRLFPLRYFERHLAESI------RPDARSLSRARNTTISMGAVASADGSALAKIGST 70
+ F +L P Y HL S R + RS ++ R I+ G++ A+GSA+ +IG T
Sbjct: 14 ETFAKLSPHPYLLAHLQPSCPTNSSKRANGRSPTQFRAPHINTGSLTHAEGSAVVRIGDT 73
Query: 71 TMLAAIKMEVM---------------TPSLESPDEGCVSIDFHMPPI-----CSPLVRPG 110
++ ++ E++ PS +D +P I CSP PG
Sbjct: 74 AVVCGVRGEILLASNVGTYRVDKSTTAPSSRPGYNEAKELDLLVPNIELATGCSPAFLPG 133
Query: 111 RPAEA-APVVAKQLSDTISSSGMINLKELSL-----------------------VGGKAA 146
+P A ++ ++ + SS M++ ++L + KA
Sbjct: 134 QPPSTLAQSLSTRIYSLLHSSRMVDDEDLRIWYQSPDLSEQDRMEDDEEPETVEPEVKAF 193
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W +Y+DI + DG DAA + V+A N+++P D + ++L +++ +
Sbjct: 194 WTLYIDILFISLDGNPLDAAWAAVVSALRNVRLPKAHWDADREMILCDDEVSLS------ 247
Query: 207 NKEKRKLTLGGIPFSLTCIL-----------HKNYILADPTSEEESIMETLVTVVLDSSN 255
+KLTL G+P + T ++ K +ILADP + EE + + +T+V+D
Sbjct: 248 ----KKLTLRGLPIAATFLVFRAKEQKRGKDKKFWILADPDTFEEGLCDESITMVVDCKA 303
Query: 256 ---QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
+++ L K GG + ++ + L R EL +L
Sbjct: 304 DKPKILGLSKVGGTTVG-KDEMKHVLELAETRWHELSPLL 342
>gi|365984549|ref|XP_003669107.1| hypothetical protein NDAI_0C02040 [Naumovozyma dairenensis CBS 421]
gi|343767875|emb|CCD23864.1| hypothetical protein NDAI_0C02040 [Naumovozyma dairenensis CBS 421]
Length = 306
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 117/261 (44%), Gaps = 29/261 (11%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L ++ R D RS S+ R+ I+ G G ++G T + I ++ P + P EG
Sbjct: 19 LRQNYRLDGRSFSQFRDVKIAFG---DEYGDVTIEMGKTKVHCRISCQITQPYEDRPFEG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPA-EAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVY 150
I P+ P G E ++A+ + + SG ++++ L +V G W V
Sbjct: 76 LFLISTENSPMAGPQFENGNNTNEDEVLIARIIEKAVRRSGALDIEGLCIVAGSKCWAVR 135
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK 210
D++ L+ DG DA+ ++ +A + + P +++ +++M P + E+EPV
Sbjct: 136 ADVHFLNCDGGFIDASCIAVMAGLLHFRKPDITVHGEQVIMHPVD------EREPV---- 185
Query: 211 RKLTLGGIPFSLTCIL--------------HKNYILADPTSEEESIMETLVTVVLDSSNQ 256
L + +P +T + + D T +EE + + ++TV L+ + +
Sbjct: 186 -PLGILHVPICVTFSFFNPMDTEENIKGDTNAEITIIDATLKEELLRDGVLTVTLNKNRE 244
Query: 257 LVSLYKPGGAVLAYTSAVQDC 277
+V + K GG + S ++ C
Sbjct: 245 VVQVSKAGGLPMDALSLMECC 265
>gi|353237792|emb|CCA69757.1| probable RRP45-Exosome complex exonuclease [Piriformospora indica
DSM 11827]
Length = 313
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 129/288 (44%), Gaps = 28/288 (9%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +S+R D RSL R +S G G +G T +LA+++ +++ P+ + P EG
Sbjct: 19 LQQSLRLDGRSLVALREPLLSFGPEL---GWVECAMGKTRVLASVEAKMVKPTPDRPYEG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++I P+ S GR ++ + + L + S ++ + L +V G+ W + L
Sbjct: 76 TINIHSEFSPMASSEYEQGRTSDEEVTITRMLDKVLRRSDALDKESLCVVAGQRVWSLKL 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVM-------------------- 191
+ L G + D A L+ + A + + P V +D ++++
Sbjct: 136 TVQFLSDAGNMLDCACLAGIVALRHFRKPEVEIDGEEVIVHSPDSRAPLPLAIHHTPICF 195
Query: 192 ---LPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVT 248
L QK ++ + + + ++ +P S + H+ + L DP EE++ ++
Sbjct: 196 TFALYSYQKLSVTKSKGTSSTTEQQSISTVP-SGSFSTHQTFALLDPILLEETLAHGTLS 254
Query: 249 VVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+ L++ +L L K GG L S + I + +R KE+ Q++E +
Sbjct: 255 IALNAQGELCVLQKNGGVPLD-QSEILRLINIAVERAKEIDQLIERRL 301
>gi|443726519|gb|ELU13639.1| hypothetical protein CAPTEDRAFT_176766 [Capitella teleta]
Length = 340
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 124/265 (46%), Gaps = 18/265 (6%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R + R ++ G G ++G++ ++ + EV P P EG + ++
Sbjct: 23 RLDGRGVYDYRKMQLTFG---EDRGCCQMELGNSIVMTQVSCEVTPPKQTRPSEGILFVN 79
Query: 97 FHMPPICSPLVRPG-RPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYC 155
+ P+ SP PG R ++ + + L + S ++ + L ++ G W + +D +
Sbjct: 80 VELSPMASPTFEPGGRMSDFGVELNRLLERCLKESRCVDTESLCIMAGLKVWTIRVDCHV 139
Query: 156 LDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTL 215
L+ DG L D SA+AA ++ + P VS+ ++ + E++P+ L++
Sbjct: 140 LNYDGNLVDCCSASAIAALAHFRRPDVSVSGEEVTI------HTLDERDPI-----PLSI 188
Query: 216 GGIPFSLTCIL--HKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSA 273
+P +T Y+L DP+ +EE +M+ + + ++ ++ +L + G +L
Sbjct: 189 HHMPLCVTFAFFSQGKYLLVDPSLKEEKVMDGKMVIGMNKHREICTL-QMSGNMLIMKDQ 247
Query: 274 VQDCIALTRQRVKELHQILEEAISG 298
V C + +V E+ +++++++
Sbjct: 248 VLRCSNIAVVKVTEITELIQKSLQA 272
>gi|302903929|ref|XP_003048964.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729898|gb|EEU43251.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 293
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 122/270 (45%), Gaps = 20/270 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E +R D R + R ++ G G A K G T +LA + EV P + P +G
Sbjct: 19 LDEGLRLDGRKFDQFRPLELTFG---DEYGVAEVKYGKTRVLAKVTAEVTVPYSDRPFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + P+ +P RP+ ++++ L T+ SG ++ + L L+ G+ W + +
Sbjct: 76 VFTITSELSPMVAPSYEVNRPSLEEVLLSRLLEKTVRRSGALDTESLCLIAGQKCWSIRV 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQKEENSEKEPVNKEK 210
D++ L DG L DAA L+ VAA + + P S++ + V P +E+EPV
Sbjct: 136 DLHVLTHDGNLTDAACLAVVAALRHFRKPDSSIEGENLTVYTP-------AEREPV---- 184
Query: 211 RKLTLGGIPFSLTCIL---HKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAV 267
L+ PF +T N +L D EE + T L+ ++ + K GG
Sbjct: 185 -PLSWLHSPFCVTYSFFGEEGNQVLVDANWLEEQLRVAYCTYSLNKHGEICQIAKLGGTS 243
Query: 268 LAYTSAVQDCIALTRQRVKELHQILEEAIS 297
L +Q C R KEL +++ ++
Sbjct: 244 LDAPLFIQ-CAQGALNRSKELSDLVDRKLA 272
>gi|224045546|ref|XP_002199163.1| PREDICTED: exosome complex component RRP42 [Taeniopygia guttata]
Length = 290
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 127/274 (46%), Gaps = 17/274 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L IK E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCAEVETDVVSNTSGSARVKLGETDILVGIKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPV-VAKQLSDTISSSGMINLKELSLVGGKA 145
PDEG ++F + + GR E +A L S ++LK L + +
Sbjct: 73 KPDEG--YLEFFVDCSSNSPELEGRGGEELGTDIANTLYRIFSCENSVDLKSLCINPKEH 130
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W++Y+D+ L+ G +FDA ++ AA N +IP K+ +L +E+ + E
Sbjct: 131 CWVLYVDVLLLECGGNIFDAISIAVKAALFNTRIP-------KVRVLEDEEGTKEIELSD 183
Query: 206 VNKEKRKLTLGGIP--FSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
+ +L + +P +L+ I +++ + D T +EE+ + + + S + S+ K
Sbjct: 184 DPYDCIRLNIDEVPCVVTLSKIGYRHVV--DATLQEEACSLASLLISVTSKGAITSMKKV 241
Query: 264 GGAVLAYTSAVQDCIALTRQRV-KELHQILEEAI 296
G L S + + T QRV K LH L++ +
Sbjct: 242 GKGSLDPESIFE--MMETGQRVGKSLHIALQKIL 273
>gi|291393541|ref|XP_002713440.1| PREDICTED: exosome component 7 [Oryctolagus cuniculus]
Length = 290
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 7/161 (4%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTIS---SSGMINLKELSLVGG 143
PDEG ++F + CS P + ++++T++ + G ++LK L +
Sbjct: 73 KPDEG--YVEFFVD--CSANATPEFEGRGGDDLGTEIANTLARIFNKGSLDLKSLCISPR 128
Query: 144 KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL 184
+ W++Y+D+ L+ G LFDA ++ AA N +IP V +
Sbjct: 129 EHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVHV 169
>gi|295664845|ref|XP_002792974.1| exosome complex exonuclease RRP45 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278495|gb|EEH34061.1| exosome complex exonuclease RRP45 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 295
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 121/255 (47%), Gaps = 20/255 (7%)
Query: 13 EMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTM 72
E ++ A R F L L ++IR D R+L + R +S G + G ++G T++
Sbjct: 4 EADISANERAFILDA----LHKNIRLDGRALDQLRPLMVSFG---NECGHVKLQLGKTSV 56
Query: 73 LAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGM 132
+ I EV P E ++G ++ + + SP + G +E +A+ L I S
Sbjct: 57 VVRISAEVTKPHPERENDGIFTVVVELNDMTSPAFKTGWQSEMETQLARILDRIIRRSNA 116
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVML 192
++ + L + GK W + D++ +D+DG L D+ L+ + A + ++ + +G++++
Sbjct: 117 LDTESLCIAAGKNCWHIRADVHVIDSDGGLVDSCCLAIMTALLHFRLSEAIVREGRVIVF 176
Query: 193 PEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTVV 250
E++ + P+N L +P S T ++ I+ D S+EE++ + + +
Sbjct: 177 SPEERVPS----PLN-------LTKLPLSTTFNIYDEGRIIVLDAVSKEEAVSDGNLIIA 225
Query: 251 LDSSNQLVSLYKPGG 265
L+ + +L K G
Sbjct: 226 LNKTGELALYIKSDG 240
>gi|71001078|ref|XP_755220.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Aspergillus fumigatus Af293]
gi|66852858|gb|EAL93182.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Aspergillus fumigatus Af293]
gi|159129307|gb|EDP54421.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Aspergillus fumigatus A1163]
Length = 292
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 122/268 (45%), Gaps = 19/268 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E +R D R + R T++ G G ++G T ++ I EV P + P +G
Sbjct: 19 LREDVRLDGRHADQLRPLTVTFG---EEYGHVKVQLGKTGLIVRISSEVTKPRDDRPFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + + SP GR + VA L + S ++ + L ++ G + W +
Sbjct: 76 IFTIALELTAMGSPAWDNGRQGDLEAYVAHVLDRLVRHSNALDTESLCILKGVSCWSIRA 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ D DG L DAA + +A + + P + DG++++ + E+ PV
Sbjct: 136 DVHVTDYDGNLVDAACIGVMAGLQHFRRPDAVVKDGQVIVYGLD------ERVPV----- 184
Query: 212 KLTLGGIPFSLT--CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA-VL 268
L + P S+T ++ D T +EE E V ++++ + + K G+ V
Sbjct: 185 PLNITHKPLSVTFHTFDEGKRVILDATRKEEQASEADVVFGMNNAGDVCFVSKFSGSPVD 244
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAI 296
A + +AL ++VKE++ I+++A+
Sbjct: 245 ALVFVSKSSVAL--EKVKEINAIIDKAL 270
>gi|330804424|ref|XP_003290195.1| hypothetical protein DICPUDRAFT_154682 [Dictyostelium purpureum]
gi|325079706|gb|EGC33294.1| hypothetical protein DICPUDRAFT_154682 [Dictyostelium purpureum]
Length = 303
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 110/231 (47%), Gaps = 15/231 (6%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D RS++ R+ I G + G ++G T + +I +++ P E P+EG +
Sbjct: 22 RIDGRSITDMRSIKIEFGK---SFGLVEVQLGKTRVYTSITCDIVEPKPERPNEGFYVFN 78
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ S V P R + + + + S I+ + L ++ G W + + I+ L
Sbjct: 79 TDISPMSSVSVDPNRGNPLENELGRIIEKGLKESRAIDTESLCIISGSKVWSIKISIHIL 138
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G L D A +S +AA + + P V++ + + P + E+EPV L++
Sbjct: 139 DDCGNLLDCASISVIAALLHFRKPDVTVIGNEATIHPID------EREPV-----PLSIH 187
Query: 217 GIPFSLTCILHKNYIL-ADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
P S+T N I+ DP ++EES+M+ ++ +++ ++ + K GG
Sbjct: 188 HTPISITFGFFPNEIMIVDPDNKEESVMDGKLSFLVNIHKEICGVSKGGGT 238
>gi|321253395|ref|XP_003192721.1| exosome complex exonuclease rrp45 [Cryptococcus gattii WM276]
gi|317459190|gb|ADV20934.1| Exosome complex exonuclease rrp45, putative [Cryptococcus gattii
WM276]
Length = 281
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 122/267 (45%), Gaps = 18/267 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
LAE R D R + R+ G G ++G T++LA + ++ P + P EG
Sbjct: 19 LAEGKRLDGRLPLQMRDVRYIFG---DELGCVECRLGKTSILAQVSATIVKPRDDRPYEG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ I+ + P+ S + GRP + ++ + L +I + I+ + L ++ G+ W + L
Sbjct: 76 FLLINSEIGPMASSVYENGRPGDDEVMIGRLLEKSIRRTEAIDREALCILAGEKVWQLRL 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVS-LDDGKIVMLPEEQKEENSEKEPVNKEK 210
++ L G L D A L+ +AA + + P V + D I+ P+ E+ PV
Sbjct: 136 TLHFLSDSGNLLDCAALAGMAALKHFRKPDVEVIGDEVIIHSPD-------ERAPV---- 184
Query: 211 RKLTLGGIPFSLTCILHKNY-ILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
L + P LT +N + DP+ E + +T+ L++ ++ L K GGA L
Sbjct: 185 -ALAIHHTPLCLTFAYFENLPPILDPSHIEAILCSGTLTLTLNAQREICVLSKAGGAPLG 243
Query: 270 YTSAVQDCIALTRQRVKELHQILEEAI 296
+ + +V+EL + LEE +
Sbjct: 244 -AEEIMGVVKFGVDKVRELVRHLEEEL 269
>gi|195457250|ref|XP_002075492.1| GK14785 [Drosophila willistoni]
gi|194171577|gb|EDW86478.1| GK14785 [Drosophila willistoni]
Length = 415
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 18/266 (6%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
++ R D R R+ ++ GA G+ + IG T +LA + ++ TPS P+EG +
Sbjct: 26 QNTRLDGRKSGDFRDVKLTFGADW---GTVIVAIGDTKVLAQVSCDIGTPSSARPNEGTL 82
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDI 153
++ + + + + L T +S ++L+ L + + W V +DI
Sbjct: 83 HLNVSLGGVAYLNESQTTHDQRFLTLNSLLERTFRNSRSLDLESLCVAAEQHVWCVRVDI 142
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKL 213
L+ DG L+DA+ ++A+AA + + P V+ D +I + S+KE +E L
Sbjct: 143 TVLNHDGNLYDASTVAALAALMHFRRPDVTFLDEEIRIY--------SDKE---RELIPL 191
Query: 214 TLGGIPFSLTCILHK---NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAY 270
P S+T L+K +Y DP EE+ ++++ + +S N+L SL GG+
Sbjct: 192 LFLHYPVSVTYCLYKSNSHYPYVDPILLEENAADSIIVLSFNSYNELCSL-NAGGSTPTK 250
Query: 271 TSAVQDCIALTRQRVKELHQILEEAI 296
+ C +R K L L++A+
Sbjct: 251 AGIIMQCARNAAKRSKSLVDFLKKAL 276
>gi|116207378|ref|XP_001229498.1| hypothetical protein CHGG_02982 [Chaetomium globosum CBS 148.51]
gi|88183579|gb|EAQ91047.1| hypothetical protein CHGG_02982 [Chaetomium globosum CBS 148.51]
Length = 268
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 11/182 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ + L E++R D R L + R ++ G G A +G T +LA EV P +
Sbjct: 13 QFVTQALQENLRLDGRQLDQYRPLELTFG---DQYGVADVTLGKTRVLAKATAEVTVPYV 69
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P +G +I + P+ SP RP E ++++ L T+ SG ++ + L LV G+
Sbjct: 70 DRPLDGIFTIATELSPMTSPAFEVNRPTETEVLLSRLLEKTVRRSGALDTESLCLVAGQK 129
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQKEENSEKE 204
W V +D++ + DG L DAA ++ VAA + + P S++ G++ V P +E+E
Sbjct: 130 CWSVRVDVHVVSHDGGLTDAACVAVVAALRHFRKPDTSMEAGRLTVYTP-------AERE 182
Query: 205 PV 206
PV
Sbjct: 183 PV 184
>gi|255935559|ref|XP_002558806.1| Pc13g03690 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583426|emb|CAP91438.1| Pc13g03690 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 297
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 120/268 (44%), Gaps = 17/268 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E++R D R R IS G G ++G T ++ I EV P + P +G
Sbjct: 19 LRENVRLDGRQPDDYRPLNISFG---EEYGHVNLQLGKTNIIVRISAEVTKPREDRPFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I+ + + SP GR + L I S ++ + L ++ G + W +
Sbjct: 76 LFNINLELTAMGSPAWESGRTNDIEAYATNTLDRIIRHSNALDTESLCILKGVSCWSIRA 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ +D DG + DAA ++ +A + + P + DG++++ EQ + PV
Sbjct: 136 DVHVIDYDGNITDAACIAIMAGLQHFRRPDAVVRDGRVIVYGVEQ------RVPV----- 184
Query: 212 KLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
L + P S+T + +++ D T +EE E + + ++S+ + L K GA
Sbjct: 185 ALNITHKPLSVTFHTFNDSKHVIVDATLKEEQAAEGDLVIGINSAGDVCYLSKYAGAPAD 244
Query: 270 YTSAVQDCIALTRQRVKELHQILEEAIS 297
V+ + ++VKE++ +E+ +
Sbjct: 245 AMVIVKKT-NVAWEKVKEINAAVEKVLQ 271
>gi|432100894|gb|ELK29247.1| Exosome complex component RRP42 [Myotis davidii]
Length = 298
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 127/271 (46%), Gaps = 24/271 (8%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E +R D R R + V++ GSA K+G T +L +K E+ TP LE P+EG
Sbjct: 27 EDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPNEG-- 84
Query: 94 SIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMV 149
++F + CS P GR E +A L S+ ++LK L + + W++
Sbjct: 85 YLEFFVD--CSANATPEFEGRGGDELGTEIANTLYRIFSNKSSVDLKSLCISPREHCWVL 142
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKE 209
Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E +
Sbjct: 143 YVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGSKDIELSDDPYD 195
Query: 210 KRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
+L++ +P +T C + +++ D T +EE+ V V + S + + K G L
Sbjct: 196 CIRLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASVLVSVTSQGVVTCMRKVGKGSL 254
Query: 269 AYTSAVQDCIALTRQRVKE-----LHQILEE 294
S + + T +RV + LH IL +
Sbjct: 255 DPESIFE--MMETSKRVGKVLHTSLHSILHK 283
>gi|390474971|ref|XP_002807638.2| PREDICTED: exosome complex component RRP42 [Callithrix jacchus]
Length = 291
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 116/247 (46%), Gaps = 17/247 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ P LE
Sbjct: 13 YIMHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGMPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAE-AAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISA 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ DG LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECDGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + L
Sbjct: 182 LSDDPYDCIRLSVENVPCIVTLCKIGYQHVV-DATLQEEACSLASLLVSVTSKGVVTCLR 240
Query: 262 KPGGAVL 268
K G L
Sbjct: 241 KVGKGSL 247
>gi|398398730|ref|XP_003852822.1| hypothetical protein MYCGRDRAFT_57534 [Zymoseptoria tritici IPO323]
gi|339472704|gb|EGP87798.1| hypothetical protein MYCGRDRAFT_57534 [Zymoseptoria tritici IPO323]
Length = 331
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 146/326 (44%), Gaps = 62/326 (19%)
Query: 17 DAFRRLFPLRYFERHLAE--SIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLA 74
D F +L P + HL + S+RP+ R +R TI+ G++ ++GSA+ ++G T ++
Sbjct: 16 DTFAKLTPRPFLLAHLKQPSSVRPNGRKPEESRQPTINTGSLTHSNGSAVVRMGDTAVVC 75
Query: 75 AIKMEVM-------TPSLESPDE------GCVSIDFHMPPICSPLVRPGR-PAEAAPVVA 120
++ E++ P ++ D+ G V + + CSP PG P+ A ++
Sbjct: 76 GVRGEILLTSDIPHPPGEDTADDDLVERLGLVIPNVELSTGCSPDHLPGNAPSSLAQALS 135
Query: 121 KQLSDTISSSGMINLKELSL-----------------VGGKAAWMVYLDIYCLDADGALF 163
++ + +S + +L + + KA W +Y+DI L DG F
Sbjct: 136 YRILSLLHTSRTLCPSDLRIQYTEPETEDDIPDQEEKIVTKAYWALYIDILVLALDGNAF 195
Query: 164 DAALLSAVAAFSNLQIPTVSLD-DGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIP--- 219
DAA ++ +AA + +P D D ++V+ P+ +L+L IP
Sbjct: 196 DAAWIAVMAALQDTTLPQAWWDADREMVLC-----------SPLISGSHQLSLRRIPITS 244
Query: 220 ----FSLTCILHK-----NYILADPTSEEESIMETLVTVVL----DSSNQLVSLYKPGGA 266
FS L K +++LADP + EE E +TVVL + ++ + K GG
Sbjct: 245 SFAVFSTASPLKKREDAQSWVLADPDAFEEGACEETLTVVLTPAISGTRGILRVEKKGGR 304
Query: 267 VLAYTSAVQDCIALTRQRVKELHQIL 292
+++ + ++ CI + ++ +L
Sbjct: 305 LVS-SEVMEQCIKVAASSCSKIEAVL 329
>gi|302685534|ref|XP_003032447.1| hypothetical protein SCHCODRAFT_15142 [Schizophyllum commune H4-8]
gi|300106141|gb|EFI97544.1| hypothetical protein SCHCODRAFT_15142 [Schizophyllum commune H4-8]
Length = 281
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 111/245 (45%), Gaps = 16/245 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ R + E +R D R R I+ G G G T ++A + +++ P E
Sbjct: 13 FVLRTVQEGLRLDGRQPLEMRTPEITFGPEL---GWVECAFGQTRVVAQVDAKMVRPPPE 69
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P +G ++I + P+ S GR +E V+ + L I S ++ + L ++ G+
Sbjct: 70 RPFDGIITIHSELSPMASTEYEIGRASEEEVVITRVLDKLIKRSEAVDRESLCVLAGERV 129
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W V L I+CL G + D A +A+AA + + P V + ++ + P SE+ PV
Sbjct: 130 WHVRLTIHCLADAGNMLDCACFAAMAALKHFRRPDVEVVGDEVTIHP------PSERAPV 183
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYI--LADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
L + P+ LT + L DP+ E ++ ++V L++ ++ + K G
Sbjct: 184 -----PLAINHAPYCLTFAFFGSGAPPLLDPSQLEATLALGTLSVALNAQREICVMQKMG 238
Query: 265 GAVLA 269
GA LA
Sbjct: 239 GAPLA 243
>gi|410083339|ref|XP_003959247.1| hypothetical protein KAFR_0J00440 [Kazachstania africana CBS 2517]
gi|372465838|emb|CCF60112.1| hypothetical protein KAFR_0J00440 [Kazachstania africana CBS 2517]
Length = 306
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 109/249 (43%), Gaps = 29/249 (11%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D RS R I G + G + ++G T + I +V P + P EG
Sbjct: 19 LKERYRLDGRSFDEFREVKIKFG---NEYGDVMVEMGETKVHVRISCQVTQPYEDRPFEG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPV-VAKQLSDTISSSGMINLKELSLVGGKAAWMVY 150
I P+ P G V +++ + I SG ++++ L +V G W V
Sbjct: 76 LFLISTESTPMAGPQFENGTNTSGDEVLISRIIEKAIRRSGALDVEGLCIVAGSKCWAVR 135
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK 210
+++ L+ DG DA+ ++ +A + + P +++ K+++ P + E+EPV
Sbjct: 136 ANVHFLNCDGGFIDASCIAVIAGLMHFKKPDITVHGEKVIVHPLD------EREPV---- 185
Query: 211 RKLTLGGIPFSLTCIL--------------HKNYILADPTSEEESIMETLVTVVLDSSNQ 256
L + IP +T ++ + D T +EE + + ++TV L+ + +
Sbjct: 186 -PLGILHIPICVTFSFFNPQDTEENIKGESNQEIAIIDATLKEELLRDGVLTVTLNKNRE 244
Query: 257 LVSLYKPGG 265
+V + K GG
Sbjct: 245 VVQVSKAGG 253
>gi|320582164|gb|EFW96382.1| Exosome non-catalytic core component [Ogataea parapolymorpha DL-1]
Length = 311
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 122/290 (42%), Gaps = 45/290 (15%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L ++IR D R L + R+ IS+ G A +G T + + E+ P + P +G
Sbjct: 19 LEQNIRLDGRKLLQMRDVQISVSR--DEYGYAEVSLGKTKVACRVTAEITKPYEDRPFDG 76
Query: 92 CVSIDFHMPPICSPLVRPG-----RPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
I + PICSP G + + ++++ + + SG ++L+ L ++ G
Sbjct: 77 IFQISTDISPICSPFFESGLTTGSKQSNDEILISRLIEKAVRRSGALDLESLCIIAGSKC 136
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W V D+ L+ DG D + ++ + A + + P + +D +++ E+Q + PV
Sbjct: 137 WAVRADLQFLNYDGNFIDISSIAVMVALLHFRKPDMEIDGNNVILFDEDQ------RNPV 190
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETL-------------------- 246
L++ IP T + +P +EE+I L
Sbjct: 191 -----PLSILHIPLCFT------FQFYNPNDDEENIKGNLNNELILLDANLIEERLSLGS 239
Query: 247 VTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+T+ ++ + +L + K GG + S + +C V +L + + + I
Sbjct: 240 MTLTINKNKELCQMVKCGGLNID-ASMIMNCCQHASNLVDDLTRKINDVI 288
>gi|212532847|ref|XP_002146580.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
gi|210071944|gb|EEA26033.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
Length = 294
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 129/280 (46%), Gaps = 22/280 (7%)
Query: 24 PLRYFERH-----LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
PL ER L E+IR D R R +++ G G ++G T+++ I
Sbjct: 6 PLSLAEREFILEALLENIRVDGRDADAFRPLSVTFG---EEYGHVKVQLGQTSLVVRISA 62
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
EV P + +G I + + SP R +E V++ L I S ++ + L
Sbjct: 63 EVSKPRDDRQSDGTFLIAMELTAMGSPAWENLRQSEFETYVSRVLDRVIRHSNALDTESL 122
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
++ GK+ W + D++ + DG L D+A + +A + + P + + DG++ +
Sbjct: 123 CILKGKSCWNIRADVHVTNFDGNLIDSACIGIMAGLQHFRRPDIEVKDGQVTVFGI---- 178
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLTCI-LHKNYILA-DPTSEEESIMETLVTVVLDSSNQ 256
+E+ PV L + P ++T H+ +L D T +EE + + + L+++ +
Sbjct: 179 --NERVPV-----PLNITHKPLAITFQSFHEGKVLILDATRKEEQASKGDLIIALNNTGE 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
++YK G+ ++ + L +Q+V EL+ ++ +A+
Sbjct: 232 TCAVYKSAGSPVSALEVINKT-NLAQQKVLELNGMISKAL 270
>gi|393215116|gb|EJD00608.1| hypothetical protein FOMMEDRAFT_112158 [Fomitiporia mediterranea
MF3/22]
Length = 282
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 122/269 (45%), Gaps = 18/269 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +S+R D R R +S G G +G T +LA + +++ P E P EG
Sbjct: 18 LKQSLRVDGRGPLDMRAVVLSFGPEL---GWVECSLGKTRVLAHVDAKMVKPPEERPLEG 74
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++I + P+ S PGRP+E ++ + L + S ++ + L ++ G+ W + L
Sbjct: 75 IITIHSEISPMASSDFEPGRPSEEEVLITRMLEKVLRRSDAVDKESLCVLAGQRVWHLRL 134
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
I+ L G + D A L+ + A + + P V + ++ + E E+ PV
Sbjct: 135 TIHFLADAGNMLDCACLAGMVALKHFRRPEVEVIGDEVTLHSPE------ERAPV----- 183
Query: 212 KLTLGGIPFSLTCILH---KNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
L+L PF LT + DP E+++ +++ L++ +L + K GG L
Sbjct: 184 PLSLHHTPFCLTFAYFDEPDTPSILDPARLEQTLATGTLSLALNAQRELCVVQKAGGVPL 243
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAIS 297
A ++ I + +VKEL +++ +
Sbjct: 244 AQEEILR-MIDVGITKVKELDAFVDKRLK 271
>gi|389584408|dbj|GAB67140.1| exosome complex exonuclease [Plasmodium cynomolgi strain B]
Length = 505
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 38/274 (13%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+F +L + +R D R+ +RN +I G+ IG T ++ I E++ P +
Sbjct: 10 FFWCNLKKKLRLDGRNFEDSRNISIYF---LGEHGNVEVSIGHTKVICKITSEIVKPFDK 66
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P EG + ++ + + V Q+SD + NL E L K+
Sbjct: 67 RPCEGMIKVNLDIDSFTN--VNDN----------SQISDECLE--IKNLIERIL---KSI 109
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD-GKIVMLPEEQKEENSEKEP 205
W + + I ++ DG L+D+ LSA +A + + V++D G I++ E+ E N
Sbjct: 110 WCLLVSIIVIENDGNLYDSCYLSAYSALVHYRNNEVTVDSSGNIII---EEGETNYTP-- 164
Query: 206 VNKEKRKLTLGGIPFSLTCILHKN---YILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
L++ P LT + N L DP+ +EE M + ++V L+ + +LVS+ K
Sbjct: 165 -------LSIHNTPI-LTTFAYFNCEDICLIDPSIQEEEFMSSKLSVALNKNGKLVSILK 216
Query: 263 PGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
PGG+ ++Y + + I L ++RVK + +ILE+A+
Sbjct: 217 PGGSPISY-EKILEAIELAKKRVKSILKILEDAL 249
>gi|432881537|ref|XP_004073829.1| PREDICTED: exosome complex component RRP42-like [Oryzias latipes]
Length = 291
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 116/249 (46%), Gaps = 21/249 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + +R D RS R+ + V++ DGSA +G T +L IK E+ P
Sbjct: 13 YILHGIRDDLRVDGRSCEDYRHMEVETDVVSNTDGSARVSLGHTAVLVGIKAEIGKPRPL 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI----SSSGMINLKELSLVG 142
PDEG ++F + CS P + +LS+T+ ++ I+LK L +
Sbjct: 73 VPDEG--YLEFFVD--CSANATPEFEGRGGEELGIELSNTLYRVFNNKNSIDLKGLCISA 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL--DDGKIVMLPEEQKEEN 200
G+ W++Y+D+ L DG L+DA ++ AA N +IP V + DD E KE
Sbjct: 129 GEHCWVLYVDVLLLQCDGNLYDAISVAIKAALFNTKIPRVHMSSDD-------EGGKEVE 181
Query: 201 SEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVS 259
+P + +L++ +P +T C + +++ D T +E++ + + + +
Sbjct: 182 LSDDPFD--CVRLSVENVPCIVTLCKVGHRHVV-DATLQEKACSVASLIIAVTHRGTVTC 238
Query: 260 LYKPGGAVL 268
+ K GG L
Sbjct: 239 VKKVGGGSL 247
>gi|384486761|gb|EIE78941.1| hypothetical protein RO3G_03646 [Rhizopus delemar RA 99-880]
Length = 303
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 120/275 (43%), Gaps = 20/275 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y E + R D RS R+ + G ++ A GSA ++G + +L +K+E+
Sbjct: 13 YIEEGIQHDCRADGRSRLEYRHMILETGLLSQASGSARCRLGESDVLVGVKVEIGEVERS 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTIS------SSGMINLKELSL 140
P++G + ++ CSP A + L+ I SG+ +L++L +
Sbjct: 73 QPNKGRLVLNVE----CSPSASQQFEGRGADEINNSLTMAIDRIFNGPQSGL-DLEKLCI 127
Query: 141 VGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEEN 200
+ G+ W++Y+D +DA G L D +++ AA N +IP + D E ++
Sbjct: 128 IPGQQCWVIYIDAMVMDAAGNLLDCIVMTTRAALYNARIPKTEIQDLGEGEYEFEVMDDV 187
Query: 201 SEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
+ EP+ + +P S+T + + DPT EE + +TV ++ + +
Sbjct: 188 EDAEPI------VGWENLPISVTLYKIADRYIIDPTILEELCSQVTLTVGVNKDGAVCGI 241
Query: 261 YKPGGAVLA---YTSAVQDCIALTRQRVKELHQIL 292
K G + T +Q AL + +++L L
Sbjct: 242 QKGGNGSIEPSLLTEMIQTATALAKPLIQQLDNKL 276
>gi|348582602|ref|XP_003477065.1| PREDICTED: exosome complex component RRP42-like [Cavia porcellus]
Length = 291
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 131/276 (47%), Gaps = 20/276 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D RS R+ + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRSCEDYRSVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 73 KPEEG--YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNNRSSVDLKSLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP K+ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISVTVKAALFNTRIP-------KVRVLEDEEGAKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCMQLSVENVPCIVTLCKIGCRHVV-DATLQEEACSLASLLVSVTSEGVVTCVR 240
Query: 262 KPGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAI 296
K G L S + + T +RV K LH L + +
Sbjct: 241 KVGKGSLDPESIFE--MMETGKRVGKVLHASLRDVL 274
>gi|281207355|gb|EFA81538.1| Putative exosome complex exonuclease [Polysphondylium pallidum
PN500]
Length = 470
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 122/268 (45%), Gaps = 20/268 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+ + +R D R L+ R+ I+ G G ++G T + + EV P E P+EG
Sbjct: 17 IDQGLRVDGRRLNDMRSIKINFGKQY---GMVEVQLGRTRVYTTVTCEVTEPKPERPNEG 73
Query: 92 CVSIDFHMPPICSPLVRP--GRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMV 149
+ + P+ S V G P EA + + + + S I+ + L +V G W V
Sbjct: 74 FFIFNTDVSPMSSVSVDSSRGNPVEAE--LGRLIERGLKESRAIDTEALCIVAGSKVWKV 131
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKE 209
+++ LD G L D A +S + A + + P V++ + P + E+EPV
Sbjct: 132 KTNVHVLDDCGNLLDCASISVITALLHFRKPDVTVVGNDATIHPID------EREPV--- 182
Query: 210 KRKLTLGGIPFSLTC-ILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
L++ P S+T K ++ DP ++EE +M+ ++ ++ ++ + K GG +
Sbjct: 183 --PLSIHHTPISITFGFFPKAIMIVDPDNKEEQVMDGKLSFYVNVHKEICGVSK-GGGMS 239
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAI 296
V C ++ R E+ Q++ EA+
Sbjct: 240 TTIEQVIKCSKISVIRATEITQLIREAL 267
>gi|329766295|ref|ZP_08257842.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137197|gb|EGG41486.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 271
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 122/267 (45%), Gaps = 15/267 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + R D R+L R I + A+ A+GSA ++G + ++ +K++ P + D+G
Sbjct: 19 LEQGKRVDGRALDEPRQLVIEVNAIPKANGSARVRLGDSEVVCGVKIQPDRPFPDMGDKG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ P+ P V G P +A+ + I S MI+L +L + K+ V+
Sbjct: 79 IFICTAELLPLSHPSVETGPPGPDVIELARVVDRGIRESHMIDLSQLVIEKNKSVVGVFA 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D +D DG LFDA +A AA + + P + +N V +
Sbjct: 139 DNVVVDYDGNLFDACAYAATAALLSSKSPKWEM--------------QNDVPTLVEGGES 184
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
++ + IP S+T N+I+ DP +E M+ +T+ DS+ + +L K G ++
Sbjct: 185 EVPITTIPVSVTMGKIGNHIIVDPNGDEWDSMDARITITTDSNGNICALQKGGIGGFSFE 244
Query: 272 SAVQDCIALTRQRVKELHQILEEAISG 298
++ C L+ + ++ + L++A G
Sbjct: 245 EVIK-CGELSVKVGSKIREKLKQAKGG 270
>gi|346469645|gb|AEO34667.1| hypothetical protein [Amblyomma maculatum]
Length = 289
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 115/248 (46%), Gaps = 27/248 (10%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + G V++ GS+ ++ +T +L IK E+ P
Sbjct: 13 YIIHGIHEDLRCDGRCCLEYRFLELETGVVSNCSGSSHVRLANTDILVGIKAELDEPYPT 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAE-AAPVVAKQLSDTISSSGMINLKELSLVG 142
+P +G I+F + C+ P GR E A + L+ S ++LK L+++
Sbjct: 73 APGKG--RIEFFVD--CTANADPEFEGRGGEEVATKIKSALAQAFGSPKCLDLKSLAVIP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
G+ W++Y+D+ L+ G+L DA + AA +L+IP VS+ +EN E
Sbjct: 129 GQQVWVLYVDVLILECGGSLLDAVSVGVKAALFDLKIPKVSV-----------TVDENGE 177
Query: 203 KE------PVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
+E P + K +T +P +T + D T EEE+ + + + ++ +
Sbjct: 178 QEIEVSGDPYDVSKMDIT--DVPCFITLSKVGQQFVLDATQEEEACAVGSLAMAVTAAGR 235
Query: 257 LVSLYKPG 264
+VSL K G
Sbjct: 236 IVSLIKGG 243
>gi|308322117|gb|ADO28196.1| exosome complex exonuclease rrp42 [Ictalurus furcatus]
Length = 291
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 17/247 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + +R D R R+ I V++ DGSA +G T +L IK E+ P
Sbjct: 13 YIMHGVRDDLRVDGRGCEDYRHMEIETDVVSNTDGSAKVSLGQTDILVGIKAEIGRPRPM 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAEAAPV-VAKQLSDTISSSGMINLKELSLVG 142
PDEG ++F + CS P GR E V ++ L ++ ++L+ L +
Sbjct: 73 VPDEG--YLEFFVD--CSANATPEFEGRGGEELGVELSNNLYKVFNNRHSLDLRSLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
G++ W++Y+D+ L DG LFDA ++ AA N +IP V + + + E KE
Sbjct: 129 GESCWVLYVDVLLLQCDGNLFDAMSIAIKAALFNTRIPKVHISEDE-----EGGKEIELS 183
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+P + +L + +P +T C + +++ D T +E+S + + + + +
Sbjct: 184 DDPYD--CMRLNVENVPCIVTLCKIGHRHVV-DATLQEKSCSVASLLISVTHKGTVTCVR 240
Query: 262 KPGGAVL 268
K GG L
Sbjct: 241 KLGGGSL 247
>gi|350636872|gb|EHA25230.1| hypothetical protein ASPNIDRAFT_49678 [Aspergillus niger ATCC 1015]
Length = 292
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 121/269 (44%), Gaps = 19/269 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E +R D R + R +S G G ++G T+++ I EV P + P +G
Sbjct: 19 LREDVRLDGRGFDQLRPLNVSFG---EEYGHVKVQLGKTSLIVRISAEVTKPHDDRPFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + + SP GR + V L + S ++ + L ++ G + W +
Sbjct: 76 LFTIAMELTAMGSPAWDNGRQGDFETYVTNVLDRVVRHSNALDTESLCILKGVSCWSIRA 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ D DG L DAA + +A + + + DG++++ + E+ PV
Sbjct: 136 DVHVTDYDGNLIDAACIGIMAGLQHFRRQDAVVKDGQVIVYGLD------ERVPV----- 184
Query: 212 KLTLGGIPFSLT--CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA-VL 268
L + P S+T ++ D T +EE E V + ++++ + + K G+ V
Sbjct: 185 ALNITHKPLSVTFHTFDEGKRVIIDATRKEEQAAEADVVIGINNAGDVCFVSKFSGSPVD 244
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAIS 297
A + +AL ++VKE++ I+++A+
Sbjct: 245 AMVFVDKTSVAL--EKVKEINAIIDKALQ 271
>gi|67539882|ref|XP_663715.1| hypothetical protein AN6111.2 [Aspergillus nidulans FGSC A4]
gi|40738896|gb|EAA58086.1| hypothetical protein AN6111.2 [Aspergillus nidulans FGSC A4]
gi|259479699|tpe|CBF70162.1| TPA: exosome complex endonuclease 2/ribosomal RNA processing
protein, putative (AFU_orthologue; AFUA_2G08860)
[Aspergillus nidulans FGSC A4]
Length = 295
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 126/282 (44%), Gaps = 24/282 (8%)
Query: 24 PLRYFERH-----LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
PL ER L E +R D R + R T+S G G ++G T+++ I
Sbjct: 6 PLSIAERDFILDALREGVRLDGRGADQLRPLTLSFG---EEYGHVKVQLGKTSLVVRISA 62
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
EV P + P +G +I + + SP GR + V L I S ++ + L
Sbjct: 63 EVAKPHDDRPFDGIFNIAMELTAMGSPAWENGRQGDLETYVTNVLDRVIRHSNALDTESL 122
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
++ G + W + D++ D DG L DA+ + +A + + P + DG++++ +++
Sbjct: 123 CILKGVSCWTIRADVHITDYDGNLIDASCIGVMAGLQHFRRPDAVVKDGQVIVYGLDER- 181
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILA--DPTSEEESIMETLVTVVLDSSNQ 256
P+N + P S+T + LA D T +EE E V + ++++
Sbjct: 182 ---VPAPLNITHK-------PLSVTFHTFDDGKLAILDATRKEEQASEADVVIGMNNAGD 231
Query: 257 LVSLYK-PGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
+ L K G V A + +AL ++VK ++ I+++A+
Sbjct: 232 VCYLSKFQGSPVDALVFITKTSLAL--EKVKYINGIIDKALQ 271
>gi|145246552|ref|XP_001395525.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Aspergillus niger CBS 513.88]
gi|134080243|emb|CAK97146.1| unnamed protein product [Aspergillus niger]
Length = 292
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 121/269 (44%), Gaps = 19/269 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E +R D R + R +S G G ++G T+++ I EV P + P +G
Sbjct: 19 LREDVRLDGRGFDQLRPLNVSFG---EEYGHVKVQLGKTSLIVRISAEVTKPHDDRPFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + + SP GR + V L + S ++ + L ++ G + W +
Sbjct: 76 LFTIAMELTAMGSPAWDNGRQGDFETYVTNVLDRVVRHSNALDTESLCILKGVSCWSIRA 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ D DG L DAA + +A + + + DG++++ + E+ PV
Sbjct: 136 DVHVTDYDGNLIDAACIGIMAGLQHFRRQDAVVKDGQVIVYRLD------ERVPV----- 184
Query: 212 KLTLGGIPFSLT--CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA-VL 268
L + P S+T ++ D T +EE E V + ++++ + + K G+ V
Sbjct: 185 ALNITHKPLSVTFHTFDEGKRVIIDATRKEEQAAEADVVIGINNAGDVCFVSKFSGSPVD 244
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAIS 297
A + +AL ++VKE++ I+++A+
Sbjct: 245 AMVFVDKTSVAL--EKVKEINAIIDKALQ 271
>gi|312371957|gb|EFR20014.1| hypothetical protein AND_20780 [Anopheles darlingi]
Length = 407
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 21/231 (9%)
Query: 17 DAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAI 76
+ FR Y + ++ R D RS R + + V A GSA ++ +T +L +
Sbjct: 111 NGFRFGAEKTYILHGIQKNYRNDGRSNRDYRPMELELDIVVHASGSARLRLANTDILVGV 170
Query: 77 KMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTIS----SSGM 132
K E+ TP + P+EG IDF + CS P +A+++S+T++ S
Sbjct: 171 KAEIDTPHPDRPNEG--KIDFFID--CSANAAPEFEGRGGEQLAEEISNTLAKAYESQHG 226
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS---LDDGKI 189
+L L ++ W +Y+D+ L+ G LFDA L+ A N ++P VS LD G +
Sbjct: 227 FDLSSLCILANHQCWKLYVDVLVLECGGNLFDAISLAVKGALYNTRVPRVSTAMLDGGSM 286
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEE 240
++ + +P + E+ K+ +P +T + DP++EEE
Sbjct: 287 DLILTD--------DPFDCERLKVDT--VPLLVTVCKIGEQCVVDPSAEEE 327
>gi|324513828|gb|ADY45664.1| Exosome complex exonuclease RRP45 [Ascaris suum]
Length = 419
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 129/281 (45%), Gaps = 22/281 (7%)
Query: 24 PLRYFERHL-----AESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
PL ER AE++R D R R+ + +GA G++L GST + A +
Sbjct: 5 PLSNCERDFILSAFAENVRLDGRKCDEFRDLKVVVGA---EFGTSLVMAGSTKVSAQVTC 61
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
++ P + G V + M P+ SP GR + + L G ++L+ L
Sbjct: 62 NIVEPKSARGNMGAVEVHVDMSPMGSPTHEDGRLGPKGIELTRVLELLCRDCGAVDLEAL 121
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
L K W + +D++ L ADGAL D A ++A+ A ++ + P V++ I++
Sbjct: 122 CLTAYKKVWQIRVDVHILQADGALIDCASVAAITALAHFRRPDVTVLVDSILV------H 175
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQ 256
+ +K P+ LT+ +P ++ + + ++ DPT E ++ V + ++
Sbjct: 176 GSDKKAPI-----PLTVYHMPICVSFGIAPDGEQVVIDPTEREAMCLKGAFVVAANKRHE 230
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
+ +L++ G +L V+ C+ + QR ++ +++ ++
Sbjct: 231 VCALHQTGNLLLNEQLIVR-CVDMAIQRAIDVTELISTVLT 270
>gi|323338208|gb|EGA79441.1| Rrp45p [Saccharomyces cerevisiae Vin13]
Length = 305
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 133/303 (43%), Gaps = 36/303 (11%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++ ++E+ A F L L ++ R D RS + R+ I+ G G K+G+
Sbjct: 1 MAKDIEISASESKFILEA----LRQNYRLDGRSFDQFRDVEITFGKXF---GDVSVKMGN 53
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGR-PAEAAPVVAKQLSDTIS 128
T + I ++ P + P EG I + P+ G E + ++ + ++
Sbjct: 54 TKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVR 113
Query: 129 SSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGK 188
SG ++++ L +V G W V D++ LD DG DA+ ++ +A + + P +++ +
Sbjct: 114 RSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQ 173
Query: 189 IVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL--------------HKNYILAD 234
I++ P +E+EPV L + IP +T + + D
Sbjct: 174 IIVHPV------NEREPV-----PLGILHIPICVTFSFFNPQDTEENIKGETNSEISIID 222
Query: 235 PTSEEESIMETLVTVVLDSSNQLVSLYKPGGA---VLAYTSAVQDCIALTRQRVKELHQI 291
T +EE + + ++TV L+ + ++V + K GG L + ++ + ++ Q+
Sbjct: 223 ATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQILQL 282
Query: 292 LEE 294
L+E
Sbjct: 283 LKE 285
>gi|448081285|ref|XP_004194851.1| Piso0_005372 [Millerozyma farinosa CBS 7064]
gi|359376273|emb|CCE86855.1| Piso0_005372 [Millerozyma farinosa CBS 7064]
Length = 305
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 110/244 (45%), Gaps = 27/244 (11%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSI 95
+R D R L R I + + G + G++ + + EV+ P + P EG +I
Sbjct: 23 VRLDGRKLDEIRQPVIRV--LPDEYGYVEIEWGNSKLTVRVSAEVVKPFEDRPFEGIFTI 80
Query: 96 DFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYC 155
+ + P+ SP GR ++ ++++ + I S ++L+ L +V G W + D+
Sbjct: 81 NTEISPMASPQFEQGRVSDDEILISRLIEKAIRRSNALDLEALCMVAGAKVWYIRADVNV 140
Query: 156 LDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTL 215
L+ DG + DAA + A + + P VS+ +++ E+EPV L++
Sbjct: 141 LEFDGGIIDAASFGVMVALQHFRKPDVSIHGSDVIV------HSLQEREPV-----PLSV 189
Query: 216 GGIPFSLTCI--------------LHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+P +T L++ + D T +EES+ + + + ++ + ++V L
Sbjct: 190 LHVPICVTFSFFNPSDSEENIKGELNEEISIIDATEKEESLRDGSLVITINKNREIVQLS 249
Query: 262 KPGG 265
K GG
Sbjct: 250 KNGG 253
>gi|222623035|gb|EEE57167.1| hypothetical protein OsJ_07096 [Oryza sativa Japonica Group]
Length = 417
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 130/292 (44%), Gaps = 38/292 (13%)
Query: 16 VDAFRRLFPL----RYFERHLAESIRPDARSLSRARNTTISMGAVASA------DGSALA 65
+D +R P + ER L +R D R R I G+ S
Sbjct: 1 MDHHQRWHPTVNEREFIERALQSDLRVDGRRPFDFRRLKILFGSSWSVCVLVQGGRLGGG 60
Query: 66 KIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSD 125
T ++ +++ P + P++G ++I PI P PGRP E+A + + +
Sbjct: 61 AARDTRVMGYATAQLVQPYKDRPNQGTLAIFTEFSPIADPAFEPGRPGESAIELGRVVDR 120
Query: 126 TISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALF--DAALLS-----------AVA 172
+ S ++++ L +V GK W V +D++ LD G L DA +LS A+A
Sbjct: 121 GLRESRAVDMESLCVVAGKHVWSVRVDLHILDNGGELNVPDAMVLSLRNLIDAANIAALA 180
Query: 173 AFSNLQIP--TVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL--HK 228
A S + P TV +DG+ V + +P ++ LT+ +P ++T
Sbjct: 181 ALSTFRRPECTVGGEDGQQVTV----------HDPEVRDPLPLTIHHLPIAVTFAYFGEG 230
Query: 229 NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIAL 280
N ++ DPT +EE++M +T ++S+ + S+ K GG + +S + C+ +
Sbjct: 231 NIMVIDPTYKEEAVMGGRMTATINSNGDVCSIQKAGGEGV-MSSVIMQCLRI 281
>gi|196007548|ref|XP_002113640.1| hypothetical protein TRIADDRAFT_14906 [Trichoplax adhaerens]
gi|190584044|gb|EDV24114.1| hypothetical protein TRIADDRAFT_14906, partial [Trichoplax
adhaerens]
Length = 267
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 122/249 (48%), Gaps = 18/249 (7%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D+R+L R + G G+A K+G++ +LA E++ P + P+EG + +
Sbjct: 20 RLDSRNLYDYRPIKLQFGV---EYGTAEVKLGASRVLAVTTCELIRP-ITRPEEGRLLFN 75
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ SPL + + ++L S I+L+ L ++ G+ W + + I+ L
Sbjct: 76 VELSPMASPLNHSNDVIDRRIALERRLEQCFVESAAIDLESLCVIAGEKVWFIRVAIHVL 135
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G + D A ++A+A+ ++ + P V++ + + +EK+ + L +
Sbjct: 136 DDVGNILDCASIAAIASLAHFRRPQVTVVGEDVTI------HNRNEKDYI-----PLNIH 184
Query: 217 GIPFSLT-CILHKNYILA-DPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAV 274
+P +T H N +A DPT +EE++ME+ + + L+ ++ ++ GG L +
Sbjct: 185 HMPLCITFAFFHGNGCMAIDPTDQEEAVMESKLVMALNRHREICTIQFTGGVTLKVDQVL 244
Query: 275 QDC-IALTR 282
C IALT+
Sbjct: 245 HCCNIALTK 253
>gi|332375881|gb|AEE63081.1| unknown [Dendroctonus ponderosae]
Length = 283
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 15/214 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+AE+ R D R R + V A GSA ++ +T +L A+K+EV TP E P EG
Sbjct: 15 VAENFRVDGRDREGYRPMELETDIVQHAFGSARLRLANTDVLVAVKIEVDTPLPEKPFEG 74
Query: 92 CVSIDFHMPPICSPLVRP---GRPAEAAPV-VAKQLSDTISSSGMINLKELSLVGGKAAW 147
I+F + CS P GR E+ V +A LS S +L++L ++ GK W
Sbjct: 75 --KIEFFVD--CSANATPDFEGRGGESLAVELANILSSAYESPLTFDLRKLCILKGKKCW 130
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVN 207
+Y+D+ L+ G LFDA L+ AA Q+P + K V + + E ++
Sbjct: 131 KLYVDVLILECGGNLFDAVSLAVKAALHITQVPKI-----KAVNIDGDNVEIEVSDNIID 185
Query: 208 KEKRKLTLGGIPFSLTCILHKNYILADPTSEEES 241
+ +L + +P +T N+ + DP+ EE
Sbjct: 186 CD--RLNVENLPVLVTVCKIGNHCIVDPSLTEEQ 217
>gi|324510352|gb|ADY44328.1| Exosome complex exonuclease RRP45 [Ascaris suum]
Length = 431
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 129/281 (45%), Gaps = 22/281 (7%)
Query: 24 PLRYFERHL-----AESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
PL ER AE++R D R R+ + +GA G++L GST + A +
Sbjct: 5 PLSNCERDFILSAFAENVRLDGRKCDEFRDLKVVVGA---EFGTSLVMAGSTKVSAQVTC 61
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
++ P + G V + M P+ SP GR + + L G ++L+ L
Sbjct: 62 NIVEPKSARGNMGAVEVHVDMSPMGSPTHEDGRLGPKGIELTRVLELLCRDCGAVDLEAL 121
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
L K W + +D++ L ADGAL D A ++A+ A ++ + P V++ I++
Sbjct: 122 CLTAYKKVWQIRVDVHILQADGALIDCASVAAITALAHFRRPDVTVLVDSILV------H 175
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQ 256
+ +K P+ LT+ +P ++ + + ++ DPT E ++ V + ++
Sbjct: 176 GSDKKAPI-----PLTVYHMPICVSFGIAPDGEQVVIDPTEREAMCLKGAFVVAANKRHE 230
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
+ +L++ G +L V+ C+ + QR ++ +++ ++
Sbjct: 231 VCALHQTGNLLLNEQLIVR-CVDMAIQRAIDVTELISTVLT 270
>gi|365761400|gb|EHN03058.1| Rrp45p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401838753|gb|EJT42221.1| RRP45-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 305
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 131/303 (43%), Gaps = 36/303 (11%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++ ++E+ A F L +H R D RS + R+ I+ G G ++G+
Sbjct: 1 MAKDIEISASESKFILEALRQHY----RLDGRSFDQFRDVKITFG---KEFGDVSVEMGN 53
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGR-PAEAAPVVAKQLSDTIS 128
T + I ++ P + P EG I + P+ G E + ++ + ++
Sbjct: 54 TKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVR 113
Query: 129 SSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGK 188
SG ++++ L +V G W V D++ LD DG DA+ ++ + + + P +++ +
Sbjct: 114 RSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVITGLMHFKKPDITVHGEQ 173
Query: 189 IVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL--------------HKNYILAD 234
I++ P +E+EPV L + IP +T + + D
Sbjct: 174 IIVHP------INEREPV-----PLGILHIPICVTFSFFNPQDTEENIKGETNSEISIID 222
Query: 235 PTSEEESIMETLVTVVLDSSNQLVSLYKPGGA---VLAYTSAVQDCIALTRQRVKELHQI 291
T +EE + + ++TV L+ + ++V + K GG L + A+ + ++ Q+
Sbjct: 223 ATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALMLMRCCHEAYAIIEKITDQILQL 282
Query: 292 LEE 294
L+E
Sbjct: 283 LKE 285
>gi|45184700|ref|NP_982418.1| AAL124Wp [Ashbya gossypii ATCC 10895]
gi|44980046|gb|AAS50242.1| AAL124Wp [Ashbya gossypii ATCC 10895]
gi|374105616|gb|AEY94527.1| FAAL124Wp [Ashbya gossypii FDAG1]
Length = 305
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 110/249 (44%), Gaps = 29/249 (11%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +++R D R+ + R+ I +G S G +G T + I ++ P + P EG
Sbjct: 19 LRQNLRLDGRTFDQFRDVEIELG---SEYGDVTITMGKTKIHCRISAQIAQPYEDRPFEG 75
Query: 92 CVSIDFHMPPICSPLVRPGR-PAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVY 150
I M P+ G E ++++ + + S ++L+ L ++ G W +
Sbjct: 76 LFVISTEMSPMAGAQFENGNNTGEDEVLISRMIEKAVRRSSAMDLEGLCIIAGSKCWAIR 135
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK 210
D++ LD DG DA+ ++ + + + P VS+ ++++ P + E+EPV
Sbjct: 136 ADVHFLDCDGGFIDASCIAVMTGLLHFRKPDVSVQGEQVIVHPVD------EREPV---- 185
Query: 211 RKLTLGGIPFSLTCILHK--------------NYILADPTSEEESIMETLVTVVLDSSNQ 256
L + IP +T + + D T +EE + + ++TV L+ + +
Sbjct: 186 -ALGILHIPVCVTFSFYNPEDAEVNVKGDSADEIAIIDATLKEELLRDGVLTVTLNKNRE 244
Query: 257 LVSLYKPGG 265
+V L K GG
Sbjct: 245 VVQLSKAGG 253
>gi|6320486|ref|NP_010566.1| Rrp45p [Saccharomyces cerevisiae S288c]
gi|14285753|sp|Q05636.1|RRP45_YEAST RecName: Full=Exosome complex component RRP45; AltName:
Full=Ribosomal RNA-processing protein 45
gi|266618484|pdb|2WP8|A Chain A, Yeast Rrp44 Nuclease
gi|1230649|gb|AAB64446.1| Ydr280wp [Saccharomyces cerevisiae]
gi|45269387|gb|AAS56074.1| YDR280W [Saccharomyces cerevisiae]
gi|151942253|gb|EDN60609.1| 3'-5'-exoribonuclease [Saccharomyces cerevisiae YJM789]
gi|190404776|gb|EDV08043.1| 3'->5' exoribonuclease [Saccharomyces cerevisiae RM11-1a]
gi|256270394|gb|EEU05592.1| Rrp45p [Saccharomyces cerevisiae JAY291]
gi|259145518|emb|CAY78782.1| Rrp45p [Saccharomyces cerevisiae EC1118]
gi|285811296|tpg|DAA12120.1| TPA: Rrp45p [Saccharomyces cerevisiae S288c]
gi|323309622|gb|EGA62830.1| Rrp45p [Saccharomyces cerevisiae FostersO]
gi|323349166|gb|EGA83396.1| Rrp45p [Saccharomyces cerevisiae Lalvin QA23]
gi|349577332|dbj|GAA22501.1| K7_Rrp45p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300393|gb|EIW11484.1| Rrp45p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 305
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 133/303 (43%), Gaps = 36/303 (11%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++ ++E+ A F L L ++ R D RS + R+ I+ G G K+G+
Sbjct: 1 MAKDIEISASESKFILEA----LRQNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMGN 53
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGR-PAEAAPVVAKQLSDTIS 128
T + I ++ P + P EG I + P+ G E + ++ + ++
Sbjct: 54 TKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVR 113
Query: 129 SSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGK 188
SG ++++ L +V G W V D++ LD DG DA+ ++ +A + + P +++ +
Sbjct: 114 RSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQ 173
Query: 189 IVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL--------------HKNYILAD 234
I++ P +E+EPV L + IP +T + + D
Sbjct: 174 IIVHPV------NEREPV-----PLGILHIPICVTFSFFNPQDTEENIKGETNSEISIID 222
Query: 235 PTSEEESIMETLVTVVLDSSNQLVSLYKPGGA---VLAYTSAVQDCIALTRQRVKELHQI 291
T +EE + + ++TV L+ + ++V + K GG L + ++ + ++ Q+
Sbjct: 223 ATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQILQL 282
Query: 292 LEE 294
L+E
Sbjct: 283 LKE 285
>gi|452823808|gb|EME30815.1| exosome complex component RRP43 [Galdieria sulphuraria]
Length = 287
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 126/295 (42%), Gaps = 45/295 (15%)
Query: 17 DAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGA-VASADGSALAKIGSTTMLAA 75
D + + P +++ L SIRPD R LS R+ T+ G V + DGSA A IG T L
Sbjct: 7 DIWNAVQPKEFYKGFLRRSIRPDGRKLSEYRDITLRKGPLVTTVDGSANASIGRTVALIG 66
Query: 76 IKMEVM------TPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
I+ +V+ S S S+ P +C +R GR E A +V + L + +
Sbjct: 67 IQPKVIEWKETKKGSARSIVGQHCSLQVEFPSVCHRDIRSGRTLEEALLVKESLENVLEQ 126
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD-DGK 188
++ +V K W + + YCL DG + + LL+ A +LQ+P V G
Sbjct: 127 --ILERDSFCIVPDKFYWHLQITAYCLSLDGNVIETFLLALYGALLDLQLPVVRASTSGD 184
Query: 189 IVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKN-----YILADPTSEEESIM 243
++ L Q + P+ K L P+ + L N Y + D + EEE+ M
Sbjct: 185 LLTLDPNQPKVTL---PMKK------LEDWPWVVPIGLFWNGPSEYYAVLDLSEEEENNM 235
Query: 244 ETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELH-QILEEAIS 297
++V + + S D +A+++Q+V L IL+E +
Sbjct: 236 SSIVWI--------------------WNSQRGDKLAISKQKVGPLSVNILQEVLQ 270
>gi|448262633|pdb|4IFD|A Chain A, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 304
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 124/281 (44%), Gaps = 32/281 (11%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L ++ R D RS + R+ I+ G G K+G+T + I ++ P + P EG
Sbjct: 18 LRQNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQPYEDRPFEG 74
Query: 92 CVSIDFHMPPICSPLVRPGR-PAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVY 150
I + P+ G E + ++ + ++ SG ++++ L +V G W V
Sbjct: 75 LFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVR 134
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK 210
D++ LD DG DA+ ++ +A + + P +++ +I++ P +E+EPV
Sbjct: 135 ADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHPV------NEREPV---- 184
Query: 211 RKLTLGGIPFSLTCIL--------------HKNYILADPTSEEESIMETLVTVVLDSSNQ 256
L + IP +T + + D T +EE + + ++TV L+ + +
Sbjct: 185 -PLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVTLNKNRE 243
Query: 257 LVSLYKPGGA---VLAYTSAVQDCIALTRQRVKELHQILEE 294
+V + K GG L + ++ + ++ Q+L+E
Sbjct: 244 VVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQILQLLKE 284
>gi|226372666|gb|ACO51958.1| Exosome complex exonuclease RRP42 [Rana catesbeiana]
Length = 291
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 123/281 (43%), Gaps = 22/281 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + +R D R R + V++ GSA KIG T +L +K E+ TP L+
Sbjct: 13 YVVHGVQDDLRTDGRGCEDYRWIELETDVVSNTTGSARVKIGHTDVLVGVKAEMSTPKLD 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAEA-APVVAKQLSDTISSSGMINLKELSLVG 142
P EG ++F + CS P GR E +A L + I+L+ L ++
Sbjct: 73 RPCEG--YLEFFVD--CSANATPEFEGRGGEELGTEIANMLYKVFDNKSSIDLESLCILP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL--DDGKIVMLPEEQKEEN 200
+ W +Y+D+ L G+LFD + AA N +IP VS+ DDG KE
Sbjct: 129 REHCWTLYIDVLLLHCGGSLFDTISIGVKAALFNTRIPKVSVLEDDGG-------NKEIE 181
Query: 201 SEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVS 259
+P + +L + +P +T C + +++ D T +EE+ V V ++ L
Sbjct: 182 LSDDPY--DCMRLNVENVPCIITLCKIGHRHVV-DATLQEEACSLASVLVAINIKGTLTC 238
Query: 260 LYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
+ K G L + + I ++ K LH L ++ E
Sbjct: 239 MRKMGKGSLD-PECIFEMIETGKRVAKSLHLSLRNVLNQEE 278
>gi|62955139|ref|NP_001017585.1| exosome complex exonuclease RRP42 [Danio rerio]
gi|62531183|gb|AAH92997.1| Zgc:110717 [Danio rerio]
Length = 291
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 115/247 (46%), Gaps = 17/247 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + +R D R R+ I V++ DGSA +G T +L IK E+ P
Sbjct: 13 YIMHGVRDDLRLDGRGCEDYRHMEIETDVVSNTDGSAKISLGHTDVLVGIKAEIGKPRPM 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAEAAPV-VAKQLSDTISSSGMINLKELSLVG 142
PDEG ++F + CS P GR E V ++ L ++ ++L+ L +
Sbjct: 73 VPDEG--YLEFFVD--CSANATPEFEGRGGEELGVELSNTLYKVFNNRHSLDLRSLCICP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
G+ W++Y+D+ L DG LFDA ++ AA N +IP V + + + E KE
Sbjct: 129 GENCWVLYVDVLLLQCDGNLFDAISIAIKAALFNTRIPKVHISEDE-----EGGKEIELS 183
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+P + +L + +P +T C + +++ D T +E++ + + + + + +
Sbjct: 184 DDPFD--CMRLNVENVPCIVTLCKIGHRHVV-DATLQEKACSVASLLIAVTHTGMVTCVR 240
Query: 262 KPGGAVL 268
K GG L
Sbjct: 241 KMGGGSL 247
>gi|448085760|ref|XP_004195940.1| Piso0_005372 [Millerozyma farinosa CBS 7064]
gi|359377362|emb|CCE85745.1| Piso0_005372 [Millerozyma farinosa CBS 7064]
Length = 305
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 108/244 (44%), Gaps = 27/244 (11%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSI 95
+R D R L R I + + G G T + + EV+ P + P EG +I
Sbjct: 23 LRLDGRKLDEIRQPVIRV--LPDEYGYVEIDWGKTKLTVRVSAEVVKPFEDRPFEGIFTI 80
Query: 96 DFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYC 155
+ + P+ SP GR ++ ++++ + I S ++L+ L +V G W + D+
Sbjct: 81 NTEISPMASPQFEQGRVSDDEILMSRLIEKAIRRSNALDLEALCMVAGAKVWYIRADVNV 140
Query: 156 LDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTL 215
L+ DG + DAA + A + + P VS+ +++ E+EPV L++
Sbjct: 141 LEFDGGIIDAASFGVMVALQHFRKPDVSIHGSDVII------HSLQEREPV-----PLSV 189
Query: 216 GGIPFSLTCI--------------LHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+P +T L++ + D T +EES+ + + + ++ + ++V L
Sbjct: 190 LHVPICVTFSFFNPSDSEENIKGELNEEISIIDATEKEESLRDGSLVITINKNREIVQLS 249
Query: 262 KPGG 265
K GG
Sbjct: 250 KNGG 253
>gi|365766354|gb|EHN07852.1| Rrp45p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 305
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 133/303 (43%), Gaps = 36/303 (11%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++ ++E+ A F L L ++ R D RS + R+ I+ G G K+G+
Sbjct: 1 MAKDIEISASESKFILEA----LRQNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMGN 53
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGR-PAEAAPVVAKQLSDTIS 128
T + I ++ P + P EG I + P+ G E + ++ + ++
Sbjct: 54 TKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVR 113
Query: 129 SSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGK 188
SG ++++ L +V G W V D++ LD DG DA+ ++ +A + + P +++ +
Sbjct: 114 RSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVXGEQ 173
Query: 189 IVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL--------------HKNYILAD 234
I++ P +E+EPV L + IP +T + + D
Sbjct: 174 IIVHPV------NEREPV-----PLGILHIPICVTFSFFNPQDTEENIKGETNSEISIID 222
Query: 235 PTSEEESIMETLVTVVLDSSNQLVSLYKPGGA---VLAYTSAVQDCIALTRQRVKELHQI 291
T +EE + + ++TV L+ + ++V + K GG L + ++ + ++ Q+
Sbjct: 223 ATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQILQL 282
Query: 292 LEE 294
L+E
Sbjct: 283 LKE 285
>gi|73985825|ref|XP_533858.2| PREDICTED: exosome complex component RRP42 isoform 1 [Canis lupus
familiaris]
Length = 291
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 129/280 (46%), Gaps = 20/280 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ I+LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSIDLKSLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFD ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWILYVDVLLLECGGNLFDTICIAVKAALFNTRIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCFRLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 262 KPGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAISGME 300
K G L S + + T +RV K LH L+ + E
Sbjct: 241 KVGKGSLDPESIFE--MMETGKRVGKVLHASLQSVLHKEE 278
>gi|395540147|ref|XP_003772020.1| PREDICTED: exosome complex component RRP42 [Sarcophilus harrisii]
Length = 281
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 125/267 (46%), Gaps = 22/267 (8%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E +R D R R + V++ GSA K+G T +L +K E+ TP LE PDEG
Sbjct: 10 EDLRVDGRGCEDYRCAEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLERPDEG-- 67
Query: 94 SIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMV 149
++F + CS P GR + +A L ++ G I+L L + + W++
Sbjct: 68 YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNNKGSIDLTSLCISPREHCWIL 125
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKE 209
Y+D+ L+ G LFDA ++ AA N IP K+ +L +E+ ++ E +
Sbjct: 126 YVDVLLLECGGNLFDAISIAVKAALFNTSIP-------KVRVLEDEEGSKDIELSDDPYD 178
Query: 210 KRKLTLGGIP--FSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAV 267
+L + +P +L+ I +++ + D T +EE+ + V + S L + K G
Sbjct: 179 CIRLNVENVPCIITLSKIGYRHVV--DATLQEEACSLASLLVSVTSKGVLTCMRKVGKGS 236
Query: 268 LAYTSAVQDCIALTRQRV-KELHQILE 293
L S + + T +RV K LH L+
Sbjct: 237 LDPESIFE--MMETGKRVGKVLHASLQ 261
>gi|312095655|ref|XP_003148426.1| hypothetical protein LOAG_12866 [Loa loa]
gi|307756410|gb|EFO15644.1| hypothetical protein LOAG_12866 [Loa loa]
Length = 276
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 114/256 (44%), Gaps = 24/256 (9%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTML 73
M D + P Y+ + L+ESI PD RS+SR R + MG + GS+ A+ G T+
Sbjct: 1 MTADLLKLCDPAAYYNQFLSESIYPDGRSISRFRPIMLRMGVNGRSAGSSFARQGGATVT 60
Query: 74 AAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMI 133
I+ ++ P ++P MP I + P E A V+ QL ++ +
Sbjct: 61 CNIE-ALLAPVSDAP--------IIMPIIQAAPNIPKNLVEDAMVMVNQL---VAQNAFC 108
Query: 134 NLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLP 193
L GG+ W++ L I L+ DGA+ DA A +L++P V D
Sbjct: 109 TKDALKTAGGRLTWLLNLHIMILNVDGAICDALCTCIAGALVDLRLPDVCTD-------C 161
Query: 194 EEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKN-----YILADPTSEEESIMETLVT 248
EE + K +++ + + IP S T I+++ IL DP SE + V
Sbjct: 162 EEDIPIDINKVKLSETFHHIEIVDIPVSSTFIVYEPPNEEVKILCDPVSELFRVAPNTVM 221
Query: 249 VVLDSSNQLVSLYKPG 264
+V+ ++ ++ + + G
Sbjct: 222 IVVGNNARIHRISQSG 237
>gi|395733899|ref|XP_002813914.2| PREDICTED: exosome complex component RRP42 [Pongo abelii]
gi|395733901|ref|XP_003776313.1| PREDICTED: exosome complex component RRP42 [Pongo abelii]
Length = 291
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 130/280 (46%), Gaps = 20/280 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ IP +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCIRLSVENIPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 262 KPGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAISGME 300
K G L S + + T +RV K LH L+ + E
Sbjct: 241 KVGKGSLDPESIFE--MMETGKRVGKVLHASLQSVLHKEE 278
>gi|122920911|pdb|2NN6|E Chain E, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 305
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 129/276 (46%), Gaps = 20/276 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 27 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 86
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 87 KPNEG--YLEFFVD--CSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISP 142
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 143 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGSKDIE 195
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 196 LSDDPYDCIRLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 254
Query: 262 KPGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAI 296
K G L S + + T +RV K LH L+ +
Sbjct: 255 KVGKGSLDPESIFE--MMETGKRVGKVLHASLQSVV 288
>gi|392587997|gb|EIW77330.1| ribosomal protein S5 domain 2-like protein [Coniophora puteana
RWD-64-598 SS2]
Length = 303
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 125/285 (43%), Gaps = 33/285 (11%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + L + +R D R R + S G G +G T +LA + +++ P E
Sbjct: 19 FLQDALRKKLRLDGRKPMDLRPISFSFGPEL---GWVDCSLGKTRVLAQVDAKMVKPLPE 75
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P EG ++I + P+ P RP+E +++ L + S ++ + L ++ G+
Sbjct: 76 RPYEGLITIHSEISPMAGPEYDTARPSEEEIGISRMLDKIVKRSDALDKESLCVLAGQRV 135
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W + L ++ + G + D A+L+++ A + + P V + ++++ SE+ PV
Sbjct: 136 WHLRLTVHFISDAGNMLDCAVLASMVALRHFRRPEVEVIGDEVII------HSPSERAPV 189
Query: 207 NKEKRKLTLGGIPFSLTCILH--------KN----------YILADPTSEEESIMETLVT 248
L L IP LT KN +LADP + EE + + ++
Sbjct: 190 -----PLALHHIPLCLTFAFFPPPSNPTSKNNEVQEETPPPIVLADPNTLEERLADGTLS 244
Query: 249 VVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILE 293
V L+ +L L+K GG L + V + VKEL +++E
Sbjct: 245 VALNVQRELCVLHKAGGLPLE-PAEVMKVVQRATFLVKELDELVE 288
>gi|356553448|ref|XP_003545068.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP42-like [Glycine max]
Length = 273
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 31/268 (11%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
+ + + + +R D R + ++ + +GSA ++G+T ++A+ K + PSL
Sbjct: 10 HFIQGGIGQDLRCDGRKRFTYKPISVETEVIPQTNGSARVRMGATDVIASAKAVLGKPSL 69
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI---------SSSGMINLK 136
PD+ VSI CS P +A +LS+ + + I L
Sbjct: 70 LQPDKXKVSIYID----CSSTAEPAFEGRGGDELAAELSNALQRCLLGGKSGAGARIGLS 125
Query: 137 ELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAV--AAFSNLQIPTVSLDDGKIVMLPE 194
L +V GK W +Y+D +++DG L DA + + AA SN IP V + G
Sbjct: 126 SLIVVEGKICWDLYIDGLLVNSDGNLLDALIEXSTIKAALSNTGIPRVQVAAGT------ 179
Query: 195 EQKEENSEKEPVNKEKRKLTLGGIPF-----SLTCI--LHKNYILADPTSEEESIMETLV 247
+E E + N+E + G+P +TC+ L ++YI+ D TSEEES + + V
Sbjct: 180 -SNDEQPEVDVSNEEFLQFDTSGVPVIVTLAKVTCMLGLGRHYIV-DATSEEESQISSAV 237
Query: 248 TVVLDSSNQLVSLYKPGGAVLAYTSAVQ 275
V + + + K GG L ++ +Q
Sbjct: 238 XSV-NRQGHICGITKRGGVGLDPSTILQ 264
>gi|330795359|ref|XP_003285741.1| hypothetical protein DICPUDRAFT_29826 [Dictyostelium purpureum]
gi|325084289|gb|EGC37720.1| hypothetical protein DICPUDRAFT_29826 [Dictyostelium purpureum]
Length = 290
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 119/254 (46%), Gaps = 26/254 (10%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEV------ 80
+ ++ + +IR D R+ RN ++ G + A+GSA K+ T +L +K E+
Sbjct: 11 FIQQGVENNIRSDGRNRVDYRNFSLETGEIIHANGSARVKLSDTEVLVGVKAEITHIQPK 70
Query: 81 -MTPSLESPDEGCVSIDFHMPPICSPLVRP---GRPAEAAPV-VAKQLSDTIS-----SS 130
+T +L++ D S C P P G+ +E + + KQL S+
Sbjct: 71 ELTNTLQTFD---TSKRLVFSVNCCPSASPEFEGKGSEFLNIELGKQLERLYKFIFNKSN 127
Query: 131 GMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIV 190
N LS+V GK W +Y+D LD+DG LFDA ++ AA N ++P V G+
Sbjct: 128 YHGNDNCLSIVSGKYYWTLYIDAIVLDSDGNLFDALSIATRAALYNTRLPRVKAIQGEY- 186
Query: 191 MLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVV 250
EE E S+ +P ++ L++ P +T + D T +EE M+ +TV
Sbjct: 187 ---EEITFEVSD-DP--EDTLSLSIENAPICVTLTKIGTQFVIDSTLQEELCMDARLTVG 240
Query: 251 LDSSNQLVSLYKPG 264
++S + + S+ K G
Sbjct: 241 INSHSNICSIQKGG 254
>gi|440473323|gb|ELQ42126.1| exosome complex exonuclease RRP45 [Magnaporthe oryzae Y34]
gi|440486517|gb|ELQ66377.1| exosome complex exonuclease RRP45 [Magnaporthe oryzae P131]
Length = 251
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 9/175 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +++R D R + R +S G G + G T ++A EV P + P +G
Sbjct: 19 LQQNLRLDGRDIDEYRPIKLSFG---DEYGLVEVEFGKTRIVAKASAEVTIPYTDRPFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + P+ SP RP E ++++ L TI S ++ + L LV G+ W + +
Sbjct: 76 IFNIVTELSPMASPAFEVNRPTETEVLLSRLLEKTIRRSNALDTESLCLVAGQKCWSIRV 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
D++ DG L DA+ L+ VAA + + P S+ +G++V + +E+EPV
Sbjct: 136 DVHAESHDGNLIDASCLAVVAALRHFRKPDTSI-EGEVVTV-----YTPAEREPV 184
>gi|189083688|ref|NP_055819.2| exosome complex component RRP42 [Homo sapiens]
gi|322510129|sp|Q15024.3|EXOS7_HUMAN RecName: Full=Exosome complex component RRP42; AltName:
Full=Exosome component 7; AltName: Full=Ribosomal
RNA-processing protein 42; AltName: Full=p8
gi|119585135|gb|EAW64731.1| exosome component 7, isoform CRA_a [Homo sapiens]
gi|119585136|gb|EAW64732.1| exosome component 7, isoform CRA_a [Homo sapiens]
gi|119585137|gb|EAW64733.1| exosome component 7, isoform CRA_a [Homo sapiens]
Length = 291
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 130/280 (46%), Gaps = 20/280 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCIRLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 262 KPGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAISGME 300
K G L S + + T +RV K LH L+ + E
Sbjct: 241 KVGKGSLDPESIFE--MMETGKRVGKVLHASLQSVVHKEE 278
>gi|338714956|ref|XP_001496279.3| PREDICTED: exosome complex component RRP42-like [Equus caballus]
Length = 291
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 17/247 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVDVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKSLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCIRLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 262 KPGGAVL 268
K G L
Sbjct: 241 KVGKGSL 247
>gi|114052969|ref|NP_001040497.1| exosc7 protein [Bombyx mori]
gi|95103140|gb|ABF51511.1| exosc7 protein [Bombyx mori]
Length = 277
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 9/216 (4%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + E R D RS R + V+ A GSA ++ +T +L IK E+ TP +
Sbjct: 13 FIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDTPKPD 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEA-APVVAKQLSDTISSSGMINLKELSLVGGKA 145
PD G + +P GR E A ++ + SS +LK+L +V GK
Sbjct: 73 KPDMGKIEFLVDGSANATPEFE-GRGGENLASSISNTMQRAYHSSQAFDLKQLCIVEGKQ 131
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W +Y+DI L+ G FDA L+ AA N +IP V K +++ + +P
Sbjct: 132 CWKLYVDILILECGGNWFDAVSLATKAALFNTRIPLV-----KALLMDGGNVDLQLSDDP 186
Query: 206 VNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEES 241
+ + L +G P +T + DP++EEES
Sbjct: 187 Y--DFKFLDVGSAPLLVTLCKIGEKCVVDPSAEEES 220
>gi|301754007|ref|XP_002912799.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex exonuclease
RRP42-like [Ailuropoda melanoleuca]
Length = 459
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 130/279 (46%), Gaps = 19/279 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRYVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDT---ISSSGMINLKELSLVGG 143
P+EG ++F + CS P + ++++T I + ++LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNKSSVDLKSLCISPR 128
Query: 144 KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEK 203
+ W++Y+D+ L+ G LFD ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 EHCWILYVDVLLLECGGNLFDTICIAVKAALFNTRIP-------RVRVLEDEEGSKDIEL 181
Query: 204 EPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
+ +L++ +P +T C + +++ D T +EE+ + V + S+ + + K
Sbjct: 182 SDDPYDCIRLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSTGVVTCMRK 240
Query: 263 PGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAISGME 300
G L S + + T +RV K LH L+ + E
Sbjct: 241 VGKGSLDPESVFE--MMETGKRVGKVLHASLQSVLHKEE 277
>gi|393796027|ref|ZP_10379391.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 271
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 121/267 (45%), Gaps = 15/267 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + R D R+L R I + A+ A+GSA ++G + ++ +K++ P + D+G
Sbjct: 19 LEQGKRVDGRALDEPRQLVIEVNAIPKANGSARVRLGDSEVVCGVKIQPDRPFPDMGDKG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ P+ P V G P +A+ + I S MI+L +L + K+ V+
Sbjct: 79 IFICTAELLPLSHPSVETGPPGPDVIELARVVDRGIRESHMIDLSQLVIEKNKSVVGVFA 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D +D DG LFDA +A AA + + P + +N V +
Sbjct: 139 DNVVVDYDGNLFDACAYAATAALLSSKSPKWEM--------------QNDVPTLVEGGES 184
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
++ + IP S+T N+I+ DP +E M+ +T+ DS+ + +L K G ++
Sbjct: 185 EVPITTIPVSVTMGKIGNHIIVDPNGDEWDSMDARITITTDSNGNICALQKGGIGGFSFE 244
Query: 272 SAVQDCIALTRQRVKELHQILEEAISG 298
++ C L+ + + + L++A G
Sbjct: 245 EVIK-CGELSVKVGSIIREKLKQAKGG 270
>gi|393247723|gb|EJD55230.1| ribosomal protein S5 domain 2-like protein [Auricularia delicata
TFB-10046 SS5]
Length = 285
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 126/272 (46%), Gaps = 20/272 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + +R D R+L R T + G +L K + ++A+I+ +++ P + EG
Sbjct: 19 LKQCLRVDGRALLEMRQPTFTFGPDFGYVECSLGK--TNRVIASIEAKMVRPQPDRLFEG 76
Query: 92 CVSIDFHMPPICSPLVRPG--RPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMV 149
++I + P+ S G RP+E + + L + S I+ + L ++ G+ W +
Sbjct: 77 IITIHSELSPMASSEYEGGYGRPSEQEVEITRMLDKVLRRSDAIDKESLCVLAGQRVWHL 136
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL-DDGKIVMLPEEQKEENSEKEPVNK 208
L + L G + D A L+ + A + + P V + D + PEE + P+
Sbjct: 137 RLTFHFLADAGNMLDCACLAGITALKHFRRPEVEVVGDEVTIHAPEE-------RAPL-- 187
Query: 209 EKRKLTLGGIPFSLTCILHKNYI--LADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
L + P LT L N + L DPT E+++ +++ L++ +L + K GG
Sbjct: 188 ---PLAIHHTPLCLTFALFDNDLPPLLDPTYLEQTLCSGTMSIALNAQRELCVVQKAGGV 244
Query: 267 VLAYTSAVQDCIALTRQRVKELHQILEEAISG 298
L A+ + + +VKEL Q++E+A+S
Sbjct: 245 PLE-ADAILKLLEIGVLKVKELDQLVEQALSA 275
>gi|353681756|ref|NP_001238821.1| exosome complex component RRP42 [Pan troglodytes]
gi|410206888|gb|JAA00663.1| exosome component 7 [Pan troglodytes]
gi|410246930|gb|JAA11432.1| exosome component 7 [Pan troglodytes]
gi|410287270|gb|JAA22235.1| exosome component 7 [Pan troglodytes]
gi|410328427|gb|JAA33160.1| exosome component 7 [Pan troglodytes]
Length = 291
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 130/280 (46%), Gaps = 20/280 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCIRLSVENVPCIITLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 262 KPGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAISGME 300
K G L S + + T +RV K LH L+ + E
Sbjct: 241 KVGKGSLDPESIFE--MMETGKRVGKVLHASLQSVLHKEE 278
>gi|260834769|ref|XP_002612382.1| hypothetical protein BRAFLDRAFT_280121 [Branchiostoma floridae]
gi|229297759|gb|EEN68391.1| hypothetical protein BRAFLDRAFT_280121 [Branchiostoma floridae]
Length = 291
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 118/252 (46%), Gaps = 24/252 (9%)
Query: 26 RYFERH-LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
R F H + + +R D R+ R+ + V++ GSA ++G+T +L +K E+ P
Sbjct: 13 RLFIVHGVQDDLRSDGRACEDYRHVQVETDVVSNTSGSARLRLGNTDILVGVKAEMGEPD 72
Query: 85 LESPDEGCVSIDFHMPPICSPLVRP---GRPAEAAPV-VAKQLSDTISSSGMINLKELSL 140
P EG ++F + CS P GR E + V+ L +S ++L L +
Sbjct: 73 PGRPKEG--KLEFFVD--CSANASPEFEGRGGEELAIEVSNALQRIFNSKSTLDLTALCI 128
Query: 141 VGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPT--VSLDDGKIVMLPEEQKE 198
+ W++++D+ L+ G LFDA L+ AA N +IPT V+ DD E Q+E
Sbjct: 129 IPEGQCWVLFVDVLVLECGGNLFDAVSLAVKAALFNTRIPTVVVTADD-------EGQQE 181
Query: 199 ENSEKEPVNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
+P + ++L + +P +L+ I H++ + D + EEE +TV +
Sbjct: 182 IELSDDPYD--VKRLDVDNVPLIVTLSKIGHRHVV--DASWEEELCSLARLTVGVTQKGT 237
Query: 257 LVSLYKPGGAVL 268
+ L K G L
Sbjct: 238 IAGLNKEGSGSL 249
>gi|395843587|ref|XP_003794559.1| PREDICTED: exosome complex component RRP42 [Otolemur garnettii]
Length = 291
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 129/276 (46%), Gaps = 20/276 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKSLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISVAVKAALFNTRIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCIRLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 262 KPGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAI 296
K G L S + + T +RV K LH L+ +
Sbjct: 241 KVGKGSLDPESIFE--MMETGKRVGKVLHSSLQSVL 274
>gi|148236233|ref|NP_001086766.1| exosome component 7 [Xenopus laevis]
gi|50418038|gb|AAH77415.1| Exosc7-prov protein [Xenopus laevis]
Length = 291
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 127/280 (45%), Gaps = 20/280 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + +R D R R + V++ GSA KIG T +L +K E+ TP LE
Sbjct: 13 YVLHGVQDDLRTDGRGCEDYRCIEVESDVVSNTTGSARVKIGHTDVLVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAEA-APVVAKQLSDTISSSGMINLKELSLVG 142
P EG ++F + CS P GR E +A L + I+L+ L +
Sbjct: 73 RPGEG--YLEFFVD--CSANAAPEFEGRGGEELGTEIAFMLYKIFDNRSSIDLESLCIQA 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFD ++ AA N +IP K+ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDTISVAVKAALFNARIP-------KVRVLEDEEGGKDFE 181
Query: 203 KEPVNKEKRKLTLGGIP--FSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
+ +L + +P +L+ I H++ + D T +EE+ + + + S L +
Sbjct: 182 LSDDPYDCVRLNVVNVPCIVTLSRIGHRHVV--DATLQEEACSVASLLISVTSKGILTCM 239
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
K G L S + + I + K LH L+ A++ E
Sbjct: 240 RKIGKGSLDPES-IFEMIETGKHVAKSLHTSLQSALNQEE 278
>gi|15215485|gb|AAH12831.1| Exosome component 7 [Homo sapiens]
gi|168272912|dbj|BAG10295.1| exosome complex exonuclease RRP42 [synthetic construct]
Length = 291
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 130/280 (46%), Gaps = 20/280 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCIRLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 262 KPGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAISGME 300
K G L S + + T +RV K LH L+ + E
Sbjct: 241 KVGKGSLDPESIFE--MMETGKRVGKVLHASLQSVLHKEE 278
>gi|426249669|ref|XP_004018572.1| PREDICTED: exosome complex component RRP42 [Ovis aries]
Length = 291
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 116/247 (46%), Gaps = 17/247 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCDDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ I+LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSASAAPEFEGRGGDDLGTEIANTLYRIFNNKSSIDLKSLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCVQLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCVR 240
Query: 262 KPGGAVL 268
K G L
Sbjct: 241 KVGKGSL 247
>gi|281343574|gb|EFB19158.1| hypothetical protein PANDA_000598 [Ailuropoda melanoleuca]
Length = 271
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 128/272 (47%), Gaps = 19/272 (6%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E +R D R R + V++ GSA K+G T +L +K E+ TP LE P+EG
Sbjct: 1 EDLRVDGRGCEDYRYVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPNEG-- 58
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDT---ISSSGMINLKELSLVGGKAAWMVY 150
++F + CS P + ++++T I + ++LK L + + W++Y
Sbjct: 59 YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNKSSVDLKSLCISPREHCWILY 116
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK 210
+D+ L+ G LFD ++ AA N +IP ++ +L +E+ ++ E +
Sbjct: 117 VDVLLLECGGNLFDTICIAVKAALFNTRIP-------RVRVLEDEEGSKDIELSDDPYDC 169
Query: 211 RKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
+L++ +P +T C + +++ D T +EE+ + V + S+ + + K G L
Sbjct: 170 IRLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSTGVVTCMRKVGKGSLD 228
Query: 270 YTSAVQDCIALTRQRV-KELHQILEEAISGME 300
S + + T +RV K LH L+ + E
Sbjct: 229 PESVFE--MMETGKRVGKVLHASLQSVLHKEE 258
>gi|156366152|ref|XP_001627004.1| predicted protein [Nematostella vectensis]
gi|156213900|gb|EDO34904.1| predicted protein [Nematostella vectensis]
Length = 266
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 87/174 (50%), Gaps = 11/174 (6%)
Query: 25 LRYFERHL-----AESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKME 79
L +ER + R D RS R + G V++ GSA ++ T +L +K E
Sbjct: 6 LSVYEREFIISGAEQDYRSDGRSCEDYRYFEVETGIVSNTSGSARLRLSDTDILVGVKAE 65
Query: 80 VMTPSLESPDEGCVSIDFHMPPICSPLVR-PGRPAEA-APVVAKQLSDTISSSGMINLKE 137
+ P+L +P GC ++F + + V GR + A + + L T S+ I+L
Sbjct: 66 IGEPNLLTP--GCGRVEFFVDCSSNASVEFNGRSGDDLAADLMRSLDRTYSNKSAIDLSS 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDGKI 189
LS++ G+ W++Y+D L+ G L+DA L+ AA N +IP TVS D G++
Sbjct: 124 LSIIHGQQCWVLYVDTLVLECGGNLYDALSLAVKAALYNTRIPNVTVSSDGGEV 177
>gi|348529951|ref|XP_003452475.1| PREDICTED: exosome complex component RRP42-like [Oreochromis
niloticus]
Length = 291
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 113/249 (45%), Gaps = 21/249 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + +R D R R+ I V++ DGSA +G T +L +K E+ P
Sbjct: 13 YILHGIRDDLRVDGRGCEDYRHMEIETDVVSNTDGSAKVTLGHTAVLVGVKAEIGKPRPT 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI----SSSGMINLKELSLVG 142
P EG ++F + CS P + +LS+T+ ++ I+LK L +
Sbjct: 73 VPTEG--YLEFFVD--CSANATPEFEGRGGEELGTELSNTLYKVFNNKRSIDLKSLCICA 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL--DDGKIVMLPEEQKEEN 200
G+ W++Y+D+ L DG L+DA ++ AA N +IP V + DD E KE
Sbjct: 129 GEHCWVLYVDVLLLQCDGNLYDAISVAIKAALFNTKIPKVHISSDD-------EGGKEIE 181
Query: 201 SEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVS 259
+P + +L + +P +T C + +++ D T +E++ + + + +
Sbjct: 182 LSDDPYD--CMRLNVENVPCIVTLCKVGHRHVV-DATLQEKACSVASLIISVTHKGTITC 238
Query: 260 LYKPGGAVL 268
+ K GG L
Sbjct: 239 MRKVGGGSL 247
>gi|358418234|ref|XP_003583876.1| PREDICTED: exosome complex component RRP42-like [Bos taurus]
gi|359078399|ref|XP_003587703.1| PREDICTED: exosome complex component RRP42-like [Bos taurus]
Length = 291
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 116/247 (46%), Gaps = 17/247 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ I+LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSIDLKSLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISVAVKAALFNTRIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCIQLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCIR 240
Query: 262 KPGGAVL 268
K G L
Sbjct: 241 KVGKGSL 247
>gi|473949|dbj|BAA06226.1| KIAA0116 [Homo sapiens]
Length = 290
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 130/280 (46%), Gaps = 20/280 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 12 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 71
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 72 KPNEG--YLEFFVD--CSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISP 127
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 128 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGSKDIE 180
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 181 LSDDPYDCIRLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 239
Query: 262 KPGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAISGME 300
K G L S + + T +RV K LH L+ + E
Sbjct: 240 KVGKGSLDPESIFE--MMETGKRVGKVLHASLQSVLHKEE 277
>gi|358369855|dbj|GAA86468.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Aspergillus kawachii IFO 4308]
Length = 292
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 120/268 (44%), Gaps = 19/268 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E +R D R + R +S G G ++G T+++ I EV P + P +G
Sbjct: 19 LREDVRLDGRGFDQLRPLNVSFG---EEYGHVKVQLGKTSLIVRISAEVTKPHDDRPFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + + SP GR + V L + S ++ + L ++ G + W +
Sbjct: 76 LFTIAMELTAMGSPAWDNGRQGDFETYVTNVLDRVVRHSNALDTESLCILKGVSCWSIRA 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ D DG L DAA + +A + + + DG++++ + E+ PV
Sbjct: 136 DVHVTDYDGNLIDAACIGIMAGLQHFRRQDAVVKDGQVIVYGLD------ERVPV----- 184
Query: 212 KLTLGGIPFSLT--CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA-VL 268
L + P S+T ++ D T +EE E V + ++++ + + K G+ V
Sbjct: 185 ALNITHKPLSVTFHTFDEGKRVIIDATRKEEQAAEADVVIGINNAGDVCFVSKFSGSPVD 244
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAI 296
A + +AL ++VKE++ +++A+
Sbjct: 245 AMVFVDKTSVAL--EKVKEINATIDKAL 270
>gi|357613811|gb|EHJ68730.1| putative exosome component 8 [Danaus plexippus]
Length = 139
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 65/105 (61%)
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T L A E+ P E PD G + + + P+CS RPG P++ A VV+ +SD +++
Sbjct: 8 TASLPAQIQELAKPKAEEPDVGFLITNVELLPLCSSKFRPGPPSDHAQVVSNVVSDIVTN 67
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAF 174
S I++K+L +V K +W++Y D+ CLD DG++ DA L++ +++
Sbjct: 68 SKCIDMKDLCIVPDKLSWVLYCDMVCLDYDGSVVDACLITLMSSL 112
>gi|194757229|ref|XP_001960867.1| GF11284 [Drosophila ananassae]
gi|190622165|gb|EDV37689.1| GF11284 [Drosophila ananassae]
Length = 296
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 123/273 (45%), Gaps = 25/273 (9%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E R D RS R + G V++A GSA ++ +T +L +K E+ PS +P+ G
Sbjct: 20 EDFRCDGRSRRDYRPMELETGVVSNASGSARLRLANTDILVGVKTEIDVPSPLAPEYG-- 77
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQL----SDTISSSGMINLKELSLVGGKAAWMV 149
++F + CS P +A++L + S + + L L+ G+ W +
Sbjct: 78 KLEFFVD--CSANATPDFEGRGGSDLAQELILSLQNAYESPQAFDYRSLCLIPGQQCWKL 135
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS---LDDGKIVMLPEEQKEENSEKEPV 206
Y+DI L+ G L DA L+A AA N ++P V+ LD G ++ + + +
Sbjct: 136 YIDILVLECGGNLHDAVSLAAKAALFNTKLPRVTATLLDAGITDLIISDNPYDCT----- 190
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSN---QLVSLYKP 263
++ + P +T +Y L DPT+EEE + V + N L +
Sbjct: 191 -----RIGIETAPLLVTVCKIGDYCLVDPTAEEEGCSTVSIVVSVSMRNGEPYLSGTHMT 245
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG + + +Q+C+ L ++L+ +L + +
Sbjct: 246 GGGSM-HRDTMQNCLQLGLSIGEQLNTLLTKML 277
>gi|332215753|ref|XP_003257009.1| PREDICTED: exosome complex component RRP42 [Nomascus leucogenys]
gi|332215755|ref|XP_003257010.1| PREDICTED: exosome complex component RRP42 [Nomascus leucogenys]
Length = 291
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 17/247 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCIRLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 262 KPGGAVL 268
K G L
Sbjct: 241 KVGKGSL 247
>gi|317574781|ref|NP_001188120.1| exosome complex exonuclease rrp42 [Ictalurus punctatus]
gi|308322915|gb|ADO28595.1| exosome complex exonuclease rrp42 [Ictalurus punctatus]
Length = 291
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 113/247 (45%), Gaps = 17/247 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D R R+ I V++ DGSA +G T +L IK E+ P
Sbjct: 13 YIMHGVRDDSRVDGRGCEDYRHMEIETDVVSNTDGSAKVSLGQTDILVGIKAEIGRPRPM 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAEAAPV-VAKQLSDTISSSGMINLKELSLVG 142
PDEG ++F + CS P GR E V ++ L ++ ++L+ L +
Sbjct: 73 VPDEG--YLEFFVD--CSANATPEFEGRGGEELGVELSNNLYKVFNNRHSLDLRSLCIRP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
G+ W++Y+D+ L DG LFDA ++ AA N +IP V + + + E KE
Sbjct: 129 GENCWVLYVDVLLLQCDGNLFDAMSIAIKAALFNTRIPNVHISEDE-----EGGKEIELS 183
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+P + +L + +P +T C + +++ D T +E+S + + + + +
Sbjct: 184 DDPY--DCMRLNVENVPCIVTLCKIGHRHVV-DATLQEKSCSVASLLISVTHKGTVTCVR 240
Query: 262 KPGGAVL 268
K GG L
Sbjct: 241 KLGGGSL 247
>gi|58264608|ref|XP_569460.1| exosome complex exonuclease rrp45 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134109839|ref|XP_776469.1| hypothetical protein CNBC5230 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259145|gb|EAL21822.1| hypothetical protein CNBC5230 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57225692|gb|AAW42153.1| exosome complex exonuclease rrp45, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 281
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 109/240 (45%), Gaps = 17/240 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
LAE R D R + R+ G G ++G T +LA + ++ P + P EG
Sbjct: 19 LAEGKRLDGRLPLQMRDVHYIFG---DELGCVECRLGKTAILAQVSATIVKPRDDRPYEG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ I+ + P+ S + GRP + ++ + L +I + I+ + L ++ G+ W + L
Sbjct: 76 FLLINSEIGPMASSVYENGRPGDDEVMIGRLLEKSIRRTEAIDREALCILAGEKVWQLRL 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVS-LDDGKIVMLPEEQKEENSEKEPVNKEK 210
++ L G L D A L+ +AA + + P V + D I+ PE E+ PV
Sbjct: 136 TLHFLSDSGNLLDCAALAGMAALKHFRKPDVEVIGDEVIIHSPE-------ERAPV---- 184
Query: 211 RKLTLGGIPFSLTCILHKNY-ILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
L + P LT +N + DP+ E + +T+ L++ ++ L K GGA L
Sbjct: 185 -PLAIHHTPLCLTFAYFENLPPILDPSHVEMMLCSGTLTLTLNAQREICVLSKAGGAPLG 243
>gi|195170324|ref|XP_002025963.1| GL10119 [Drosophila persimilis]
gi|194110827|gb|EDW32870.1| GL10119 [Drosophila persimilis]
Length = 296
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 126/277 (45%), Gaps = 25/277 (9%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E R D RS R + G V++A GSA ++ +T +L IK E+ P +P+ G
Sbjct: 20 EDFRCDGRSRRDYRPMELETGLVSNASGSARLRLANTDILVGIKTEIDVPDPLTPEFG-- 77
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQL----SDTISSSGMINLKELSLVGGKAAWMV 149
++F + CS P +A++L + S + + L L+ G+ W +
Sbjct: 78 KLEFFVD--CSANATPEFEGRGGSDLAQELVLALENAYESPLAFDYRTLCLIPGQQCWKL 135
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS---LDDGKIVMLPEEQKEENSEKEPV 206
Y+DI L+ G L DA L+A AA N ++P V+ LD G ++ + + +
Sbjct: 136 YIDILILECGGNLHDAVSLAAKAALHNTKLPRVTASLLDAGVTDLIISDNPYDCT----- 190
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ---LVSLYKP 263
+LT+ +P +T +Y L DP++EEE+ + V + N L +
Sbjct: 191 -----RLTIDTVPLLVTVCKIGDYCLVDPSAEEEACSTVSIVVSVSMRNGEAFLSGSHMT 245
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
GG + + +++C+ L ++L+ +L + + E
Sbjct: 246 GGGAM-HRDTMRNCLNLGLSIGEQLNTLLAKVLKQEE 281
>gi|366996108|ref|XP_003677817.1| hypothetical protein NCAS_0H01580 [Naumovozyma castellii CBS 4309]
gi|342303687|emb|CCC71468.1| hypothetical protein NCAS_0H01580 [Naumovozyma castellii CBS 4309]
Length = 303
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 124/281 (44%), Gaps = 32/281 (11%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L ++ R D R + R+ ++ G + G K+G T + I ++ P + P EG
Sbjct: 19 LRQNYRLDGRLFDQFRDVEVTFG---NEYGDVTVKMGDTRVHCRISCQISQPYEDRPFEG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVV-AKQLSDTISSSGMINLKELSLVGGKAAWMVY 150
I P+ P G + ++ A+ + + SG ++++ L +V G W V
Sbjct: 76 LFLISTENSPMAGPQFENGNNTDEDEILCARIIEKAVRRSGALDIEGLCIVAGSKCWAVR 135
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK 210
D++ L+ DG DA+ ++ +A + + P +++ ++++ P E E+EP
Sbjct: 136 ADVHFLNCDGGFIDASCIAVMAGLIHFKKPDITVHGEQVIIHPIE------EREPT---- 185
Query: 211 RKLTLGGIPFSLTCIL--------------HKNYILADPTSEEESIMETLVTVVLDSSNQ 256
L + IP +T ++ + D T +EE + + ++TV L+ + +
Sbjct: 186 -PLGILHIPICVTFSFFNPKETEENIKGESNEEITVIDATLKEELLRDGVLTVTLNKNRE 244
Query: 257 LVSLYKPGG---AVLAYTSAVQDCIALTRQRVKELHQILEE 294
+V + K GG L+ S ++T + ++ Q ++E
Sbjct: 245 VVQVSKAGGLPMDALSLMSCCHKAYSITEKVTDQIVQAVKE 285
>gi|189055112|dbj|BAG38096.1| unnamed protein product [Homo sapiens]
Length = 291
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 130/280 (46%), Gaps = 20/280 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGREDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCIRLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 262 KPGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAISGME 300
K G L S + + T +RV K LH L+ + E
Sbjct: 241 KVGKGSLDPESIFE--MMETGKRVGKVLHASLQSVVHKEE 278
>gi|426340209|ref|XP_004034025.1| PREDICTED: exosome complex component RRP42 [Gorilla gorilla
gorilla]
gi|426340211|ref|XP_004034026.1| PREDICTED: exosome complex component RRP42 [Gorilla gorilla
gorilla]
Length = 291
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 129/276 (46%), Gaps = 20/276 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCIRLSVENVPCIVTLCKIGCRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 262 KPGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAI 296
K G L S + + T +RV K LH L+ +
Sbjct: 241 KVGKGSLDPESIFE--MMETGKRVGKVLHASLQSVL 274
>gi|417398454|gb|JAA46260.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp42
[Desmodus rotundus]
Length = 291
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 17/247 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA ++G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRGVEVETDVVSNTSGSARVRLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR E +A L + ++L+ L +
Sbjct: 73 KPNEG--YLEFFVD--CSANATPEFEGRGGDELGTEIANTLYRIFHNKSSVDLEALCVSP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDSIRLSVDNVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 262 KPGGAVL 268
K G L
Sbjct: 241 KVGKGSL 247
>gi|307206575|gb|EFN84575.1| Exosome complex exonuclease RRP42 [Harpegnathos saltator]
Length = 296
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 108/238 (45%), Gaps = 15/238 (6%)
Query: 35 SIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVS 94
R D R R+ I + +GSA +IG+T +L +K+E+ TP P+EG
Sbjct: 26 GFRNDGRQKYEYRSLEIETRLMPQTNGSARLRIGNTDVLVGVKVEIDTPHANKPEEG--K 83
Query: 95 IDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTIS----SSGMINLKELSLVGGKAAWMVY 150
+DF + CS P + +A ++S+ +S + +LKEL ++ K W +Y
Sbjct: 84 LDFFVD--CSANATPAFEGKGGEDLATEISNLLSLAYRTPYAFDLKELCILPHKKCWKMY 141
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK 210
+DI L G LFDA + AA N +IP ++V + E + + +
Sbjct: 142 VDILILQCGGNLFDAVGAAVKAALYNTEIP-------RVVTAMLDGNEPDVKLSDDLYDC 194
Query: 211 RKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
KL + P +T + + DPT EEES + + + + ++ S+ K G A L
Sbjct: 195 IKLNVTNYPVVITVCKIGDNCVVDPTPEEESCSVASLIMSVMPNGKITSVVKIGYASL 252
>gi|113197990|gb|AAI21334.1| hypothetical LOC496941 [Xenopus (Silurana) tropicalis]
Length = 291
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 128/280 (45%), Gaps = 20/280 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + +R D R R + V++ GSA KIG T +L +K E+ TP LE
Sbjct: 13 YVLHGVQDDLRTDGRGCEDYRCIEVETDVVSNTTGSARVKIGHTDVLVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAEA-APVVAKQLSDTISSSGMINLKELSLVG 142
P EG ++F + CS P GR E +A L + I+L+ L +
Sbjct: 73 RPGEG--YLEFFVD--CSANATPEFEGRGGEELGAEIAFMLYKIFDNRSSIDLESLCIQE 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFD ++ AA N +IP K+ +L +++ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDTISVAVKAALFNARIP-------KVRILEDDEGGKDFE 181
Query: 203 KEPVNKEKRKLTLGGIP--FSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
+ +L + +P +L+ I H++ + D T +EE+ + + + S L +
Sbjct: 182 LSDDPYDCVRLNVVNVPCIVTLSRIGHRHVV--DATLQEEACSVASLLIAVTSKGILTCM 239
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
K G L S + + I ++ K LH L+ A++ E
Sbjct: 240 RKIGKGSLDPES-IFEMIETGKRVAKSLHTSLQSALNQEE 278
>gi|350413287|ref|XP_003489947.1| PREDICTED: exosome complex component RRP42-like [Bombus impatiens]
Length = 291
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 23/213 (10%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSI 95
R D R R+ I + GSA +IG+T +L IK+E+ P + P+EG +
Sbjct: 22 FRNDGRRRCEYRSMEIETKLMPQTHGSARLRIGNTDILVGIKIELDVPHADRPNEG--KL 79
Query: 96 DFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSS----GMINLKELSLVGGKAAWMVYL 151
+F + CS P + +A ++S+ ++++ +L+ L ++ K W +Y+
Sbjct: 80 EFFVD--CSATATPAFEGKGGDDLATEISNILTAAYQTRNAFDLRTLCILPHKKCWKIYV 137
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTV---SLDDGKIVMLPEEQKEENSEKEPVNK 208
DI L G LFDA ++ AA ++ +IP + +LD G+ P+ + +++
Sbjct: 138 DILILQCGGNLFDAVGITVKAALNSTEIPKITAATLDGGE----PDIELSDDA------Y 187
Query: 209 EKRKLTLGGIPFSLT-CILHKNYILADPTSEEE 240
+ +L P +T C + NYI+ DPTSEEE
Sbjct: 188 DCIQLDTSNYPIIVTLCKIGDNYIV-DPTSEEE 219
>gi|221128137|ref|XP_002160444.1| PREDICTED: exosome complex component RRP45-like [Hydra
magnipapillata]
Length = 437
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 120/272 (44%), Gaps = 17/272 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + + IR D R RN +I G G ++G T +LA E++ P
Sbjct: 15 FVLKSIKSGIRLDGRQAFDYRNISIQFGIDY---GCCEVQLGETRVLAQTSCELVKPIGT 71
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P EG + ++ + P+ SP GR + + + I S I+++ L L+ G+
Sbjct: 72 RPTEGQLHLNVDLSPMASPSFETGRMTSQGLEINRLIERCIKESRCIDVESLCLIAGEKV 131
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W + +DI L+ G + D + ++ +A+ ++ + V++ ++++ EK+P+
Sbjct: 132 WSIRVDIVVLNDCGNILDCSCIAGIASLAHFKHHDVTVTGTEVII------HNFKEKDPI 185
Query: 207 NKEKRKLTLGGIPFSLT--CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
L + +P S T I ++ DP +EESI+ + + + ++ G
Sbjct: 186 -----PLNVHHMPISTTFGFIDDGEQMIIDPEEKEESILSGKLIMAFNIYGEVCCAQMSG 240
Query: 265 GAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
G Y +Q C ++ + E+ I++ A+
Sbjct: 241 GVSFDYEQILQ-CAKISSVKSSEITNIIKTAL 271
>gi|213983243|ref|NP_001135527.1| uncharacterized protein LOC100216070 [Xenopus (Silurana)
tropicalis]
gi|156229972|gb|AAI52124.1| Zgc:110717 protein [Danio rerio]
gi|195539973|gb|AAI67984.1| Unknown (protein for MGC:180975) [Xenopus (Silurana) tropicalis]
Length = 291
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 115/247 (46%), Gaps = 17/247 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + +R D R R+ I V++ DGSA +G T +L IK E+ P
Sbjct: 13 YIMHGVRDDLRLDGRGCEDYRHMEIETDVVSNTDGSAKISLGHTDVLVGIKAEIGKPRPM 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAEAAPV-VAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR E V ++ L ++ ++L+ L +
Sbjct: 73 VPNEG--YLEFFVD--CSANATPEFEGRGGEELGVELSNTLYKVFNNRHSLDLRSLCICP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
G+ W++Y+D+ L DG LFDA ++ AA N +IP V + + + E KE
Sbjct: 129 GENCWVLYVDVLLLQCDGNLFDAISIAIKAALFNTRIPKVHISEDE-----EGGKEIELS 183
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+P + +L + +P +T C + +++ D T +E++ + + + + + +
Sbjct: 184 DDPFD--CMRLNVENVPCIVTLCKIGHRHVV-DATLQEKACSVASLLIAVTHTGMVTCVR 240
Query: 262 KPGGAVL 268
K GG L
Sbjct: 241 KMGGGSL 247
>gi|410911694|ref|XP_003969325.1| PREDICTED: exosome complex component RRP42-like [Takifugu rubripes]
Length = 291
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 12/177 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + +R D R R+ I V++ DGSA +G T +L IK E+ P
Sbjct: 13 YILHGIRDDLRVDGRGCEDYRHMEIETDVVSNTDGSAKVTLGHTVVLVGIKTEIGKPRPM 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI----SSSGMINLKELSLVG 142
P+EG ++F + CS P + +LS+T+ ++ I+LK L +
Sbjct: 73 VPNEG--YLEFFVD--CSANATPEFEGRGGEELGTELSNTLYRVFNNKHSIDLKRLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTV--SLDD--GKIVMLPEE 195
G+ W++Y+D+ L DG L+DA ++ AA N +IP V S DD GK + L ++
Sbjct: 129 GEHCWVLYVDVLLLQCDGNLYDAMSIAIKAALFNTKIPKVFISSDDEGGKDIELSDD 185
>gi|296081159|emb|CBI18185.3| unnamed protein product [Vitis vinifera]
Length = 407
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 117/230 (50%), Gaps = 19/230 (8%)
Query: 73 LAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGM 132
+ + +++ P + P+EG +SI P+ P GRP EAA + + + + S
Sbjct: 1 MGFVTGQLIQPYRDRPNEGTLSIYTEFSPMADPSFEAGRPGEAAVELGRVIDRGLRESRA 60
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL--DDGK-- 188
++++ L ++ GK W + +D++ +D G L DAA ++A+AA + P S +DG+
Sbjct: 61 VDMESLCVLAGKLVWSIRIDLHIIDNGGNLIDAANIAALAALLTFRRPECSFGGEDGQEL 120
Query: 189 IVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLT--CILHKNYILADPTSEEESIMETL 246
IV PE +EP+ L + +P ++T I ++N ++ DPT EE++M
Sbjct: 121 IVHPPE-------VREPL-----PLIVHHLPIAVTFAIIGNENIMVIDPTHSEEAVMGGR 168
Query: 247 VTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+T L+++ + ++ K GG + S + C+ + + ++ ++ A+
Sbjct: 169 MTATLNTNGDVCAIQKAGGEGI-IQSVIMQCLRIASVKAADITSKIKNAV 217
>gi|440792691|gb|ELR13899.1| 3' exoribonuclease family, domain 1 domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 524
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 126/271 (46%), Gaps = 18/271 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
LAE R D R L R IS G ++G T + ++ EV+ P + P EG
Sbjct: 25 LAEGRRLDGRGLYDYRTLKISF---PYQPGYCEVQLGQTRVYVVVRCEVVEPYADRPTEG 81
Query: 92 CVSIDFHMPPICSPLVRPG-RPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVY 150
+ P+ S G R +E A V + + ++ S I+ + L + G+ W V
Sbjct: 82 FFIFNTEFSPMASASFEVGARVSEEAVEVGRLIERSLRDSRAIDTEALCIRAGEKVWAVQ 141
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK 210
+D++ LD G L DAA ++ V+A + + P VS+ I + +++EPV
Sbjct: 142 IDVHVLDDGGNLIDAASIATVSALLHFRRPDVSITGDAITV------HSVADREPV---- 191
Query: 211 RKLTLGGIPFSLTCILH--KNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
L++ +P +T + + ++ DP +EE + VT++ + +L ++K GG L
Sbjct: 192 -PLSIHHLPLCVTFAVFGDGDQVVVDPWFKEEQSLNGRVTLIHNQHRELCGVHKSGGPGL 250
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAISGM 299
+ V+ C + +V+++ Q ++ AI+
Sbjct: 251 PLNTLVK-CSKIAAVKVQDVIQAIQSAITAQ 280
>gi|70944649|ref|XP_742234.1| exoribonuclease PH [Plasmodium chabaudi chabaudi]
gi|56521094|emb|CAH75418.1| exoribonuclease PH, putative [Plasmodium chabaudi chabaudi]
Length = 281
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 125/277 (45%), Gaps = 14/277 (5%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
L+Y E + +IR D R+L R I+ + SADGS+ ++ IK+ ++ P
Sbjct: 4 LKYIEEGINSNIRVDGRTLLTYRTIEINKNILVSADGSSSVMNEENNVICGIKLSLLPPD 63
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGK 144
S DEG V++ C V R + + + + I+ K+L ++ K
Sbjct: 64 QNSIDEGFVNLQID----CPASVASNRIKKEHLEIMTSIIYDLCIKNNIDKKKLCVLPSK 119
Query: 145 AAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTV----SLDDGKIVMLPEEQKEEN 200
W + +++ L+ G L D ++ A +++ IP V +D+ + + K +
Sbjct: 120 FVWGIDINVMVLNGGGGLLDIISIAIYVALNDMNIPVVKAPKKIDE---LNMFHNTKSKE 176
Query: 201 SEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
E E V EK IP ++ N + D + EE ++E + V + SS + V+
Sbjct: 177 YELEIVENEKLPFPCDNIPICISIGEINNKYIYDMSKIEEELVENVFVVAVTSSGKCVAF 236
Query: 261 YKPGGAVLAYTSAV---QDCIALTRQRVKELHQILEE 294
+K G + +S + ++ + +++ K++++ +E+
Sbjct: 237 HKLYGISMEISSILNMSENSVQISQNLFKKINEAIEK 273
>gi|70948509|ref|XP_743754.1| exosome complex exonuclease [Plasmodium chabaudi chabaudi]
gi|56523406|emb|CAH76566.1| exosome complex exonuclease, putative [Plasmodium chabaudi
chabaudi]
Length = 434
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 90/168 (53%), Gaps = 10/168 (5%)
Query: 129 SSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGK 188
+S ++N + L ++ K W + ++I ++ DG L+D+ LSA +A + + +V++D+
Sbjct: 37 ASNILNFESLCIIPYKKVWCLLINITVIENDGNLYDSCYLSAYSALVHFRNNSVNIDNAG 96
Query: 189 IVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVT 248
V++ EE E N V+ T F C L DP+S EE M + ++
Sbjct: 97 NVIIDEE--EVNYSSLSVHNSPILTTFAYFNFEEIC-------LIDPSSYEEEFMSSKLS 147
Query: 249 VVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+ ++ + L+S+ KPGG ++Y + I L ++RVK + +ILE+A+
Sbjct: 148 IAINKNGNLISILKPGGLPISYDKILH-GIELAKKRVKSILKILEDAL 194
>gi|402860382|ref|XP_003894609.1| PREDICTED: exosome complex component RRP42 [Papio anubis]
gi|402860384|ref|XP_003894610.1| PREDICTED: exosome complex component RRP42 [Papio anubis]
gi|355559716|gb|EHH16444.1| hypothetical protein EGK_11725 [Macaca mulatta]
gi|355746753|gb|EHH51367.1| hypothetical protein EGM_10727 [Macaca fascicularis]
gi|380786223|gb|AFE64987.1| exosome complex component RRP42 [Macaca mulatta]
gi|384943954|gb|AFI35582.1| exosome complex component RRP42 [Macaca mulatta]
Length = 291
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 129/280 (46%), Gaps = 20/280 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N IP ++ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTSIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCIRLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 262 KPGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAISGME 300
K G L S + + T +RV K LH L+ + E
Sbjct: 241 KVGKGSLDPESIFE--MMETGKRVGKVLHASLQSVLHKEE 278
>gi|349602645|gb|AEP98722.1| Exosome complex exonuclease RRP42-like protein, partial [Equus
caballus]
Length = 283
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 8/162 (4%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 5 YIVHGVQEDLRVDGRGCEDYRCVDVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 64
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 65 KPNEG--YLEFFVD--CSANATPEFEGRGGDDLGTEIANALYRIFNNKSSVDLKSLCISP 120
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL 184
+ W++Y+D+ L+ G LFDA ++ AA N +IP V +
Sbjct: 121 REHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRV 162
>gi|195383888|ref|XP_002050657.1| GJ22278 [Drosophila virilis]
gi|194145454|gb|EDW61850.1| GJ22278 [Drosophila virilis]
Length = 296
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 21/214 (9%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E R D RS R + G V++A GSA ++ +T +L +K E+ P+ +P G
Sbjct: 20 EDFRCDGRSRRDYRPMELETGLVSNASGSARLRLANTDILVGVKTEIDVPNPLTPQFG-- 77
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQL----SDTISSSGMINLKELSLVGGKAAWMV 149
++F + CS P +A++L + S + + L L+ G+ W +
Sbjct: 78 KLEFFVD--CSANATPEFEGRGGSDLAQELILSLQNAYESPFAFDYRTLCLIPGQQCWKL 135
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS---LDDGKIVMLPEEQKEENSEKEPV 206
Y+DI L+ G L+DA L+A AA N ++P V+ LD G ++ + + +
Sbjct: 136 YIDILILECGGNLYDAVSLAAKAALYNTKLPRVTATLLDAGVTDLIISDNPYDCT----- 190
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEE 240
++ + +P +T +Y L DPT+EEE
Sbjct: 191 -----RIGIDAVPLLVTVCKIGDYCLVDPTAEEE 219
>gi|357631022|gb|EHJ78761.1| exosc7 protein [Danaus plexippus]
Length = 310
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 99/219 (45%), Gaps = 15/219 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D RS R + V+ A GSA ++ +T +L +K E+ P +
Sbjct: 13 YILHGIEDDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGVKTEIDVPKPD 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAEA-APVVAKQLSDTISSSGMINLKELSLVG 142
P++G IDF + CS P GR E A ++ + S +LK+L ++
Sbjct: 73 KPNQG--KIDFFVD--CSANATPEFEGRGGEQLANNISNLMQRAYHSQQAFDLKQLCILE 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
GK W +Y+DI L+ G L DA L+ AA N +IP V K +L +
Sbjct: 129 GKQCWKLYVDILILECGGNLCDAVSLAVKAALFNTRIPFV-----KAALLDGGNVDLQLS 183
Query: 203 KEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEES 241
+P + + L +G P +T + DP++EEES
Sbjct: 184 DDPY--DSKLLEVGTAPLLVTLCKIGEKCVVDPSAEEES 220
>gi|344276339|ref|XP_003409966.1| PREDICTED: exosome complex component RRP42-like [Loxodonta
africana]
Length = 457
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 130/276 (47%), Gaps = 20/276 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D RS R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 179 YIVHGVQEDLRVDGRSCEDYRCMEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 238
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++L+ L +
Sbjct: 239 KPNEG--YLEFFVD--CSANATPEFEGRGGDDLGAEIANTLYGIFNNKSSVDLRSLCISP 294
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP K+ +L +E+ ++ E
Sbjct: 295 REHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------KVRVLEDEEGSKDIE 347
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 348 LFDDPYDCIRLSVDNVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSMGVVTCMR 406
Query: 262 KPGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAI 296
K G L S + + T +RV K LH L+ +
Sbjct: 407 KVGKGSLDPESIFE--MMETGKRVGKVLHASLQSVL 440
>gi|405963081|gb|EKC28685.1| Exosome complex exonuclease RRP42 [Crassostrea gigas]
Length = 262
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 89/169 (52%), Gaps = 11/169 (6%)
Query: 26 RYFERH-LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
+ F +H + ++ R D R R+ + G +++ GSA ++ +T +LA +K E+ TPS
Sbjct: 11 KIFIKHGVQDNCREDGRGCEDYRHIELETGLLSNTTGSARVRLANTDILAGVKAELGTPS 70
Query: 85 LESPDEGCVSIDFHMPPICSPLVRP---GRPAEA-APVVAKQLSDTISSSGMINLKELSL 140
+ P++G ++F + CS P GR E A + L+ T +L+ L +
Sbjct: 71 PDKPNKG--RLEFFVD--CSANATPVFEGRGGEELAAEIGNILTRTYDCPSCFDLEALCI 126
Query: 141 VGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDG 187
+ + W++Y+D+ L+ G LFD A ++ AA N +IP TVS D+G
Sbjct: 127 IPEEQCWILYVDVLLLECGGNLFDVASIAVKAALYNTKIPKVTVSRDEG 175
>gi|225716114|gb|ACO13903.1| Exosome complex exonuclease RRP42 [Esox lucius]
Length = 291
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 126/280 (45%), Gaps = 20/280 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + +R D R R+ I V++ DGSA +G T +L +K E+ P
Sbjct: 13 YILHGVRDDLRVDGRGCEDYRHMEIETDVVSNTDGSAKVSLGHTDVLVGVKAEIGKPRPM 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI----SSSGMINLKELSLVG 142
P EG ++F + CS P + +LS+T+ ++ I+LK L +
Sbjct: 73 VPHEG--YLEFFVD--CSANATPEFEGRGGDELGVELSNTLYKVFNNRSSIDLKSLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
G+ W++Y+D+ L DG LFDA ++ AA N +IP V L + + E KE
Sbjct: 129 GEHCWVLYVDVLLLQCDGNLFDAISVAIKAALFNTKIPKVHLSENE-----EGGKEIELS 183
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+P + +L + +P +T C + +++ D T +E++ + + + + +
Sbjct: 184 DDPYD--CMRLNVENVPCIVTLCKVGYRHVV-DATLQEKACSVASLIISVTHKGTITCVR 240
Query: 262 KPGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAISGME 300
K GG L S + T +RV K LH L E + E
Sbjct: 241 KVGGGSLDPESIFE--TTETGKRVGKALHAPLMELLQKEE 278
>gi|443685755|gb|ELT89253.1| hypothetical protein CAPTEDRAFT_159382 [Capitella teleta]
Length = 287
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 81/157 (51%), Gaps = 4/157 (2%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+ + +R D R+ R I V++++GS+ ++ +T +L +K E++ P E P G
Sbjct: 18 VQDGLRQDGRTSEDYRCVEIETNVVSNSNGSSRVRMANTDILVGVKAEIVEPETEQPKNG 77
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++F + CS P +A +++ + S ++L+ L ++ GK W++Y+
Sbjct: 78 --RVEFFVD--CSANATPAFEGRGGEDLATEIASLLDLSVHLDLEALCIISGKQCWLLYV 133
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGK 188
D+ L+ G LFDA L+ +A +IP V++ G+
Sbjct: 134 DVLILECGGNLFDAVALAVKSALHQTRIPLVTVSVGE 170
>gi|195430734|ref|XP_002063403.1| GK21414 [Drosophila willistoni]
gi|194159488|gb|EDW74389.1| GK21414 [Drosophila willistoni]
Length = 296
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 21/230 (9%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E+ R D RS R + G V++A GSA ++ +T +L +K E+ P +P+ G
Sbjct: 20 ENYRCDGRSRKDYRPMELETGLVSNASGSARLRLANTDILVGVKTEIDVPDPLTPEFG-- 77
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQL----SDTISSSGMINLKELSLVGGKAAWMV 149
++F + CS P +A++L + S + + L L+ G+ W +
Sbjct: 78 KLEFFVD--CSANATPEFEGRGGSDLAQELILALQNAYESPLSFDYRTLCLIPGQQCWKL 135
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS---LDDGKIVMLPEEQKEENSEKEPV 206
Y+DI L+ G L DA L+A AA N ++P V+ LD G ++ + + +
Sbjct: 136 YIDILILECGGNLHDAVSLAAKAALYNTKLPRVTASLLDAGITDLIISDNPYDCT----- 190
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
+L +G +P +T +Y L DP++EEE + V + N+
Sbjct: 191 -----RLEIGTVPILVTVCKIGDYCLVDPSAEEEVCSTVSMVVAISMKNK 235
>gi|254586253|ref|XP_002498694.1| ZYRO0G16412p [Zygosaccharomyces rouxii]
gi|238941588|emb|CAR29761.1| ZYRO0G16412p [Zygosaccharomyces rouxii]
Length = 306
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 117/276 (42%), Gaps = 29/276 (10%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +++R D RS + R+ I G G +G T + I ++ P + P EG
Sbjct: 19 LRQNLRLDGRSFDQFRDVDIKFGKEY---GDVTVTMGKTKIHCRISCQIAQPYEDRPFEG 75
Query: 92 CVSIDFHMPPICSPLVRPGR-PAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVY 150
I P+ P G E + + + + SG ++++ L +V G W +
Sbjct: 76 LFLISTETSPMAGPQFENGNSTGEDEVLCVRIIEKAVRRSGALDVEGLCIVAGSKCWAIR 135
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK 210
D++ LD DG L DA+ ++ + A + + P +++ ++ + P + E+EPV
Sbjct: 136 ADVHFLDCDGGLLDASCIAVMTALLHFKKPDITVLGDRVTVHPTD------EREPV---- 185
Query: 211 RKLTLGGIPFSLTCILH-----KNYILADPTSE---------EESIMETLVTVVLDSSNQ 256
L + IP +T + I D +E EE + + +TV L+ + +
Sbjct: 186 -PLGILHIPICVTFSFFNPQDTEENIKGDSNAEIAIIDANLKEELLRDGTLTVTLNKNRE 244
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
+V + K GG + S +++C K QIL
Sbjct: 245 VVQVSKAGGLPMDALSLMENCYKAYTITEKLTDQIL 280
>gi|148703327|gb|EDL35274.1| exosome component 8, isoform CRA_c [Mus musculus]
gi|148703328|gb|EDL35275.1| exosome component 8, isoform CRA_c [Mus musculus]
Length = 90
Score = 79.0 bits (193), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 52/76 (68%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCV 93
E P +++PD G V
Sbjct: 64 AEFAAPPVDAPDRGYV 79
>gi|195020434|ref|XP_001985193.1| GH14641 [Drosophila grimshawi]
gi|193898675|gb|EDV97541.1| GH14641 [Drosophila grimshawi]
Length = 415
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 125/272 (45%), Gaps = 17/272 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + + ++IR D R + R+ ++ GA G+ +G T +LA + ++ TPS
Sbjct: 19 FVQSAVKQNIRFDGRKSNEFRDVKLTFGADW---GTVALSMGDTKVLAQVSCDIGTPSSA 75
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+EG + ++ + + + + L T SS ++L+ L + +
Sbjct: 76 RGNEGTLHLNVDIKGVAFLDEVQATHDQRQLTLNSLLERTFRSSRCLDLESLCIATEQHV 135
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W V +DI L+ DG L+DA+ ++A+AA + + P VS + +I SE+E
Sbjct: 136 WCVRVDINVLNHDGNLYDASTIAALAALMHFRRPDVSFIEDEIRTY--------SERE-- 185
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYI--LADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+E L P S+T ++K+ L DPT EE+ ++++ + +S +L +L G
Sbjct: 186 -RELMPLLFLHYPVSVTYCVYKSSTQPLVDPTLLEENAADSIIVLSFNSYQELCTL-NAG 243
Query: 265 GAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
G + C +R K L Q + +A+
Sbjct: 244 GTAPTNVRTIMQCAHGAARRSKALVQFIRKAL 275
>gi|410950992|ref|XP_003982186.1| PREDICTED: exosome complex component RRP42 [Felis catus]
Length = 291
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 17/247 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKSLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFD ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWILYVDVLLLECGGNLFDTISIAVKAALFNTRIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCIRLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 262 KPGGAVL 268
K G L
Sbjct: 241 KVGKGSL 247
>gi|241608403|ref|XP_002405972.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp43, putative
[Ixodes scapularis]
gi|215500728|gb|EEC10222.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp43, putative
[Ixodes scapularis]
Length = 425
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 125/262 (47%), Gaps = 18/262 (6%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R+ +R +S+G G +A +G T +LA + EV+ P P+EG + ++
Sbjct: 24 RVDGRTSKDSRALRLSLGL---DRGCCVASLGETKVLAQVSSEVIVPKPNRPNEGELFVN 80
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ +P GR + +A+ L + S ++L+ L +V + W + +D+ L
Sbjct: 81 LELSPMAAPHFEAGRLGDFGVEIARLLERCVRDSHCVDLESLCIVAREKVWSLRVDVQVL 140
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
+ G + + A ++ VAA + + P V+ V+ E + E+EPV L L
Sbjct: 141 NHRGNIAECASVATVAALLHFRRPDVT------VVGTEVTVHDPREREPV-----PLHLH 189
Query: 217 GIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAV 274
P+ ++ + +L DP+ EE I + L+T+ +++ ++ +L++ G + V
Sbjct: 190 HYPYLMSFAFYDEGKTVLVDPSELEERIADGLLTLGVNAHYEICTLHQRG--CIIGKEQV 247
Query: 275 QDCIALTRQRVKELHQILEEAI 296
C L R K + + ++E I
Sbjct: 248 LLCSRLACVRAKAITEAIKEDI 269
>gi|296423271|ref|XP_002841178.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637413|emb|CAZ85369.1| unnamed protein product [Tuber melanosporum]
Length = 330
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 130/320 (40%), Gaps = 55/320 (17%)
Query: 19 FRRLFPLRYFERHLAES--IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAI 76
F++L P + ERHL + RP R+ R ++ +++ A GSA+ + G T ++ +
Sbjct: 22 FQKLAPKIFLERHLQSTPATRPSGRNPDTFRTPSLHTNSLSHAHGSAVVRTGDTAVVCGV 81
Query: 77 KMEVMTPSL-------------------------ESPDEGCVSIDFHMPPICSPLVRPGR 111
+ EV++ + E + G V + M CS PG
Sbjct: 82 RGEVLSLAAGTGGRIVVLRTGEDGRGKNGEGEGDEVRERGLVVTNLEMGTGCSRDYHPGP 141
Query: 112 PAEAAPVVAKQLSDTISSSGMINLKELSLVGG-----KAAWMVYLDIYCLDADGALFDAA 166
P + A V +L + S+ +I+ + L ++ KA W++Y+D + DG + DAA
Sbjct: 142 PTDFAQAVTARLHRLLLSNKLISSQSLRILDPNTEEVKAYWVLYIDAVVISLDGNVLDAA 201
Query: 167 LLSAVAAFSNLQIPTVSLDDGK--IVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFS--- 221
S +AA + ++P D +V PE + + L + G+ F+
Sbjct: 202 WASILAALRSTRLPQAYWDQDTEVVVCYPEVSR------------YKSLDVKGLAFTASF 249
Query: 222 ----LTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDC 277
L IL+DP EE + V V ++ + K GG + + V +C
Sbjct: 250 AVIDLGAGKGGKVILSDPDEFEEGVCGERVMVCALEGEKVGWIEKGGG--VGQVAEVVEC 307
Query: 278 IALTRQRVKELHQILEEAIS 297
+ +R K Q+ E +
Sbjct: 308 VHRATERFKIWEQLFAEVLG 327
>gi|440905791|gb|ELR56125.1| Exosome complex exonuclease RRP42, partial [Bos grunniens mutus]
Length = 273
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 17/240 (7%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E +R D R R + V++ GSA K+G T +L +K E+ TP LE P+EG
Sbjct: 2 EDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPNEG-- 59
Query: 94 SIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMV 149
++F + CS P GR + +A L ++ I+LK L + + W++
Sbjct: 60 YLEFFVD--CSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSIDLKSLCISPREHCWVL 117
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKE 209
Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E +
Sbjct: 118 YVDVLLLECGGNLFDAISVAVKAALFNTRIP-------RVRVLEDEEGSKDIELSDDPYD 170
Query: 210 KRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
+L++ +P +T C + +++ D T +EE+ + V + S + + K G L
Sbjct: 171 CIQLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCIRKVGKGSL 229
>gi|58381777|ref|XP_311461.2| AGAP010483-PA [Anopheles gambiae str. PEST]
gi|55242661|gb|EAA07136.2| AGAP010483-PA [Anopheles gambiae str. PEST]
Length = 303
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 21/221 (9%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + +++R D R+ R V A GSA ++ +T +L +K E+ TP+ +
Sbjct: 13 YILHGIQKNMRNDGRTNRDYRPMEFESEIVVHAAGSARLRLANTDILVGVKAEIDTPNPD 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTIS----SSGMINLKELSLVG 142
P+EG +DF + CS P +A ++S+T+S S +L L ++
Sbjct: 73 RPNEG--KVDFFID--CSANATPEFEGRGGEQLATEISNTLSKAYESQKGFDLAGLCIMA 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL---DDGKIVMLPEEQKEE 199
G W +Y+D+ L+ G LFDA L+ A N +IP VS D G + ++ +
Sbjct: 129 GHQCWKLYVDVLILECGGNLFDAVSLAVKGALFNTRIPRVSTAMHDGGSMDLILTD---- 184
Query: 200 NSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEE 240
+P + E+ +T P +T + + DP++EEE
Sbjct: 185 ----DPYDCERLDVTTA--PILVTVCKIGDQCVVDPSAEEE 219
>gi|124487127|ref|NP_001074657.1| exosome complex exonuclease RRP42 [Mus musculus]
gi|408360083|sp|Q9D0M0.2|EXOS7_MOUSE RecName: Full=Exosome complex exonuclease RRP42; AltName:
Full=Exosome component 7; AltName: Full=Ribosomal
RNA-processing protein 42
gi|66267444|gb|AAH94932.1| Exosome component 7 [Mus musculus]
gi|124376042|gb|AAI32364.1| Exosome component 7 [Mus musculus]
gi|148677125|gb|EDL09072.1| mCG23310, isoform CRA_b [Mus musculus]
gi|148877509|gb|AAI45676.1| Exosome component 7 [Mus musculus]
Length = 291
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 17/247 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++L+ L +
Sbjct: 73 KPNEG--YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLRSLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGAKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCIRLSVENVPCIVTLCKIGCRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 262 KPGGAVL 268
K G L
Sbjct: 241 KVGKGSL 247
>gi|125811424|ref|XP_001361870.1| GA21043 [Drosophila pseudoobscura pseudoobscura]
gi|54637046|gb|EAL26449.1| GA21043 [Drosophila pseudoobscura pseudoobscura]
Length = 296
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 126/277 (45%), Gaps = 25/277 (9%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E R D RS R + G V+++ GSA ++ +T +L IK E+ P +P+ G
Sbjct: 20 EDFRCDGRSRRDYRPMELETGLVSNSSGSARLRLANTDILVGIKTEIDVPDPLTPEFG-- 77
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQL----SDTISSSGMINLKELSLVGGKAAWMV 149
++F + CS P +A++L + S + + L L+ G+ W +
Sbjct: 78 KLEFFVD--CSANATPEFEGRGGSDLAQELVLALENAYESPLAFDYRTLCLIPGQQCWKL 135
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS---LDDGKIVMLPEEQKEENSEKEPV 206
Y+DI L+ G L DA L+A AA N ++P V+ LD G ++ + + +
Sbjct: 136 YIDILILECGGNLHDAVSLAAKAALHNTKLPQVTASLLDAGVTDLIISDNPYDCT----- 190
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ---LVSLYKP 263
+LT+ +P +T +Y L DP++EEE+ + V + N L +
Sbjct: 191 -----RLTIDTVPLLVTVCKIGDYCLVDPSAEEEACSTVSIVVSVSMRNGEAFLSGSHMT 245
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
GG + + +++C+ L ++L+ +L + + E
Sbjct: 246 GGGAM-HRDTMRNCLNLGLSIGEQLNTLLAKVLKQEE 281
>gi|387915924|gb|AFK11571.1| exosome complex component RRP42-like protein [Callorhinchus milii]
Length = 291
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 111/248 (44%), Gaps = 19/248 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + +R D R R I V++ GSA KIG T +L +K E+ P LE
Sbjct: 13 YVMHGVQDDLRIDGRGCEDYRYIEIETDVVSNTSGSARVKIGHTGVLVGVKAEMGAPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAE-AAPVVAKQLSDTISSSGMINLKELSLVG 142
P EG ++F + CS P GR E +A L + ++L L +
Sbjct: 73 RPKEG--FLEFFVD--CSANATPEFEGRGGEDLGTEIANTLYRVFDNGSSLDLTALCITP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++++D+ L+ G LFDA ++ AA N +IP K+ +L +E+ + E
Sbjct: 129 REHCWILFVDVLLLECGGNLFDAISIAVKAALHNTRIP-------KVRVLEDEEGSKEIE 181
Query: 203 KEPVNKEKRKLTLGGIP--FSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
+ +L + +P +L+ I +++ + D TS+EE+ + V + +
Sbjct: 182 LSDDPYDCIRLNVESVPCIITLSKIGYRHVV--DATSQEEACCMASLLVSVTGKGTITCF 239
Query: 261 YKPGGAVL 268
K GG L
Sbjct: 240 RKIGGGSL 247
>gi|340371255|ref|XP_003384161.1| PREDICTED: exosome complex component RRP45-like [Amphimedon
queenslandica]
Length = 410
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 119/261 (45%), Gaps = 18/261 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+ E R D RS+ R I V G+ L IG T + A + EV+ P + P +G
Sbjct: 21 IQERKRLDGRSVYDYRQVFIKPSPVTH--GNVLVTIGETRVQACVGCEVVVPRPQRPTDG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ + P+ +P G+ + V + L S ++ + L ++ G+ W + +
Sbjct: 79 LLYFNVLPSPMAAPNYDIGKSSLTMRV-ERLLDRCFKESRSLDTESLCIIAGQKVWSIRV 137
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
DI+ L+ G + D ++++ A + + P V++ + P SE+EPV
Sbjct: 138 DIHILNDSGNITDCCVMASFCALKHCRRPYVTVSGEHATIHPV------SEREPV----- 186
Query: 212 KLTLGGIPFSLT--CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
L + P +T + NY+L DP+ EEE ++ + +V++ ++ ++ G A L
Sbjct: 187 PLNIHHTPICITFGFLSEGNYLLVDPSIEEEKVLTGHLYIVMNIHREICTMQLEGVA-LQ 245
Query: 270 YTSAVQDCIALTRQRVKELHQ 290
+ V+ C + +V EL++
Sbjct: 246 HEEVVK-CTKIAMTKVNELNK 265
>gi|37359778|dbj|BAC97867.1| mKIAA0116 protein [Mus musculus]
Length = 286
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 17/247 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T L +K E+ TP LE
Sbjct: 8 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDFLVGVKAEMGTPKLE 67
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++L+ L +
Sbjct: 68 KPNEG--YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLRSLCISP 123
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 124 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGAKDIE 176
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 177 LSDDPYDCIRLSVENVPCIVTLCKIGCRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 235
Query: 262 KPGGAVL 268
K G L
Sbjct: 236 KVGKGSL 242
>gi|156841697|ref|XP_001644220.1| hypothetical protein Kpol_1051p10 [Vanderwaltozyma polyspora DSM
70294]
gi|156114858|gb|EDO16362.1| hypothetical protein Kpol_1051p10 [Vanderwaltozyma polyspora DSM
70294]
Length = 305
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 115/267 (43%), Gaps = 29/267 (10%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ L ++ R D R + R+ I G G A +G+T + + + P
Sbjct: 13 KFLLEALRQNQRLDGREFDQFRDVEIDFG---KEFGDATVTMGNTKVQCRVSCSIAQPYE 69
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGR-PAEAAPVVAKQLSDTISSSGMINLKELSLVGGK 144
+ P EG I P+ P G E + A+ + + SG ++++ L +V G
Sbjct: 70 DRPFEGLFFISTESSPMAGPQFENGNNTGEDEVLCARIIEKAVRRSGALDIEGLCIVAGS 129
Query: 145 AAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKE 204
W + D++ L+ DG DA+ ++ +AA + + P +S+ ++ + P + E+E
Sbjct: 130 KCWAIRADVHFLNCDGGFIDASCIAVMAALMHFRKPDISVFGEQVTVHPVD------ERE 183
Query: 205 PVNKEKRKLTLGGIPFSLTCIL--------------HKNYILADPTSEEESIMETLVTVV 250
PV L + IP +T + + D + +EE + + ++TV
Sbjct: 184 PV-----PLGILHIPICVTFSFFNPEDTEENIKGESNSEITIIDASLKEELLRDGVLTVT 238
Query: 251 LDSSNQLVSLYKPGGAVLAYTSAVQDC 277
L+ + ++V + K GG + S +Q C
Sbjct: 239 LNKNREVVQVSKAGGLPMDALSLMQCC 265
>gi|303284571|ref|XP_003061576.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456906|gb|EEH54206.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 318
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 131/276 (47%), Gaps = 31/276 (11%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIG----STTMLAAIKMEVMT 82
Y + +++R D R+ R T+ +G + A GSA A++G ST ++ +K ++
Sbjct: 10 YVRDGIDQNMRNDGRTREDYRELTLDLGVIPQATGSARARLGLDAWSTDVIVTVKADIGA 69
Query: 83 PSLESPDEGCVSIDFHMPPICSPLVRPGRPAEA-APVVAKQL-----------SDTISSS 130
PS E P +G + + S GR EA A +++ L S ++S+
Sbjct: 70 PSAEHPGDGRLRCAVELSSA-SDTAYGGRGGEARATELSRALERSLLGATAGSSASLSAH 128
Query: 131 G---MINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDG 187
G +++ L + GK+ W++ +D L DG + DA ++ AA + +IP V+ G
Sbjct: 129 GEGCALDMSALGIQRGKSCWILQVDGLVLADDGNVLDALSMATRAALFDAKIPKVTAVAG 188
Query: 188 KIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLV 247
P++ E + +P +E +L + G+P +T + + D T +EES+ + +
Sbjct: 189 PN---PDDPAELELDDDP--EECSRLDVSGVPVIVTLTRVGKHSIVDATKDEESMRDPRL 243
Query: 248 TVVLDSSNQLVSLYKPGG------AVLAYTSAVQDC 277
V +D++ ++ S+ K GG A+ A T +C
Sbjct: 244 CVGVDATGKVRSVGKRGGGGIDLNAMCAMTRTACEC 279
>gi|242022077|ref|XP_002431468.1| Exosome complex exonuclease RRP42, putative [Pediculus humanus
corporis]
gi|212516756|gb|EEB18730.1| Exosome complex exonuclease RRP42, putative [Pediculus humanus
corporis]
Length = 290
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 127/272 (46%), Gaps = 27/272 (9%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
++ R D R+ S R + V+ A+GSA ++ +T +L +K E++ P++E+PD+G
Sbjct: 20 DNFRYDGRTRSEYRPIEVETDVVSHANGSARLRLANTDILVGVKAEIVKPTIENPDKG-- 77
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI----SSSGMINLKELSLVGGKAAWMV 149
I+F + CS P +A LS + S+ ++LK L ++ W +
Sbjct: 78 KIEFFVD--CSANATPAFEKRGGEDLANDLSSALTRAYSAPESLDLKSLCILPKFQCWKL 135
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTV---SLD--DGKIVMLPEEQKEENSEKE 204
Y+D+ L+ G LFDA L AA N IP V +LD D ++V+ ++
Sbjct: 136 YVDVLILECGGNLFDAVGLGVKAALRNTFIPRVVAAALDGCDPELVI----------SED 185
Query: 205 PVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
P + +L P +T + ++ + DP +EEE++ + V S + SL K
Sbjct: 186 PYD--CWRLDTSKTPVFVTVMRIGDHCVVDPGAEEEAVSGGGLLVSY-GSGSITSLLKIS 242
Query: 265 GAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
G L + +++ I L + L LE A+
Sbjct: 243 GGSL-HPITLREMIQLGGSAGECLQDTLERAL 273
>gi|195128659|ref|XP_002008779.1| GI11625 [Drosophila mojavensis]
gi|193920388|gb|EDW19255.1| GI11625 [Drosophila mojavensis]
Length = 417
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 121/272 (44%), Gaps = 17/272 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + + ++ R D R + R+ ++ G S G+ +G T +LA + ++ TPS
Sbjct: 19 FIQSAVKQNTRFDGRKANEFRDVKLTFG---SDWGTVAVSMGDTKVLAQVSCDIGTPSSA 75
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+EG + ++ + + + + L T SS ++L+ L + +
Sbjct: 76 RANEGTLYLNVDIKGVAFLDEIQSTHDQRFLTLNSLLERTFRSSRCLDLESLCIAVEQHV 135
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W V +DI L+ DG L+DA+ ++A+AA + + P VS + KI E +
Sbjct: 136 WCVRVDINVLNHDGNLYDASTIAALAALMHFRRPEVSYAEEKIHTFSERE---------- 185
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYI--LADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+E L P S+T L+K+ L DPT EE+ ++++ + +S +L +L G
Sbjct: 186 -RELMPLLFLHYPVSVTYCLYKSSSNPLVDPTLLEENAADSIIVLSFNSYQELCTL-NAG 243
Query: 265 GAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
G + C R K L Q + +A+
Sbjct: 244 GTAPTNVRTIMQCARSAANRSKALVQFIRKAL 275
>gi|297285946|ref|XP_002802903.1| PREDICTED: exosome complex exonuclease RRP42-like [Macaca mulatta]
Length = 556
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 115/247 (46%), Gaps = 17/247 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N IP ++ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTSIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCIRLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 262 KPGGAVL 268
K G L
Sbjct: 241 KVGKGSL 247
>gi|195121612|ref|XP_002005314.1| GI19145 [Drosophila mojavensis]
gi|193910382|gb|EDW09249.1| GI19145 [Drosophila mojavensis]
Length = 296
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 21/214 (9%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E R D RS R + G V++A GSA ++ +T +L +K E+ P+ +P+ G
Sbjct: 20 EDFRCDGRSRRDYRPMELETGLVSNASGSARLRLANTDILVGVKTEIDVPNPLTPEFG-- 77
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQL----SDTISSSGMINLKELSLVGGKAAWMV 149
++F + CS P +A++L + S + + L L+ G+ W +
Sbjct: 78 KLEFFVD--CSANATPEFEGRGGSDLAQELILSLQNAYESPYAFDYRTLCLIPGQQCWKL 135
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS---LDDGKIVMLPEEQKEENSEKEPV 206
Y+DI L+ G L DA L+A AA N ++P V+ LD G ++ + + +
Sbjct: 136 YIDILILECGGNLHDAVSLAAKAALYNTKLPRVTATLLDAGVTDLIISDNPYDCT----- 190
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEE 240
++ + +P +T +Y L DPT+EEE
Sbjct: 191 -----RIGIDAVPLLVTVCKIGDYCLVDPTAEEE 219
>gi|334348902|ref|XP_003342119.1| PREDICTED: exosome complex component RRP42-like [Monodelphis
domestica]
Length = 332
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 125/267 (46%), Gaps = 22/267 (8%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E +R D R R + V++ GSA K+G T +L +K E+ TP LE P+EG
Sbjct: 61 EDLRVDGRGCEDYRCAEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPRLERPNEG-- 118
Query: 94 SIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMV 149
++F + CS P GR + +A L ++ G I+L L + + W++
Sbjct: 119 YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNNKGSIDLTALCISPREHCWIL 176
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKE 209
Y+D+ L+ G LFDA ++ AA N IP K+ +L +E+ ++ E +
Sbjct: 177 YVDVLLLECGGNLFDAISIAVKAALFNTSIP-------KVRVLEDEEGTKDIELSDDPYD 229
Query: 210 KRKLTLGGIP--FSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAV 267
+L + +P +L+ I +++ + D T +EE+ + V + S L + K G
Sbjct: 230 CIRLNVENVPCIITLSKIGYRHVV--DATLQEEACSLASLLVSVTSKGVLTCMRKVGKGS 287
Query: 268 LAYTSAVQDCIALTRQRV-KELHQILE 293
L S + + T +RV K LH L+
Sbjct: 288 LDPESIFE--MMETGKRVGKVLHASLQ 312
>gi|50305471|ref|XP_452695.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641828|emb|CAH01546.1| KLLA0C11099p [Kluyveromyces lactis]
Length = 305
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 123/276 (44%), Gaps = 32/276 (11%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D RS + R+ I +G A G +G+T + I E+ P + P EG I
Sbjct: 24 RLDGRSYDQFRDVKIEIG---EAYGDVTVTMGNTKVHCRISCEIAQPYEDRPFEGLFHIS 80
Query: 97 FHMPPICSPLVRPGR-PAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYC 155
P+ G E ++++ + + SG ++++ L ++ G W + D++
Sbjct: 81 TETTPMAGAQFENGNNTGEEEVLISRMIEKAVRRSGALDVEGLCIIAGSKCWSLRADVHF 140
Query: 156 LDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTL 215
LD DG L DA+ ++ +A + + P V++ ++ + P + E+EPV+ L +
Sbjct: 141 LDCDGGLIDASCIAVMAGLLHFKKPDVTVLGERVTVHPID------EREPVS-----LGV 189
Query: 216 GGIPFSLTCIL--------------HKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+P +T + + D + +EE + + ++TV L+ + ++V +
Sbjct: 190 LHVPICVTFSFFNPDDTEENIKGEDNAEISIIDASLKEELLRDGVLTVTLNKNREVVQIS 249
Query: 262 KPGGAVLAYTSAVQDC---IALTRQRVKELHQILEE 294
K GG + S + C + + ++H+++++
Sbjct: 250 KAGGLPMEALSLIDCCHKAYGIVEKITDQIHRVVKQ 285
>gi|297829840|ref|XP_002882802.1| hypothetical protein ARALYDRAFT_341414 [Arabidopsis lyrata subsp.
lyrata]
gi|297328642|gb|EFH59061.1| hypothetical protein ARALYDRAFT_341414 [Arabidopsis lyrata subsp.
lyrata]
Length = 294
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 127/276 (46%), Gaps = 33/276 (11%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ E L +R D R L R TI G GS+ ++G T ++A + +++ P
Sbjct: 17 KFVESALQSELRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMAFVTAQLVQPYK 73
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P+EG SI P+ P P P E+A + + + + S +++ + L + GK
Sbjct: 74 DRPNEGSFSIFTEFSPMADPSFEPVHPGESAVELGRIIDRALRESRVVDTESLCVFAGKL 133
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL---DDGKIVMLPEEQKEENSE 202
W L DAA ++A+AA + P ++ + ++++ P E E
Sbjct: 134 VW-------------NLVDAANIAALAALLTFRRPDCTVGGENSQEVIIHPPE------E 174
Query: 203 KEPVNKEKRKLTLGGIPFSLTC-ILHKNYILA-DPTSEEESIMETLVTVVLDSSNQLVSL 260
+EP+ L + +P + T +K IL DPT EE++M +TV ++++ + ++
Sbjct: 175 REPL-----PLIIHHLPIAFTFGFFNKGSILVMDPTVVEEAVMSGRMTVTVNANGDICAI 229
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
KPG + S + C+ L R +I+ EA+
Sbjct: 230 QKPGEEGVN-QSVILHCLRLASSRAAATTKIIREAV 264
>gi|298711453|emb|CBJ32592.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 239
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 2/151 (1%)
Query: 35 SIRPDARSLSRARNTTISMGAVASADGSALAKIG--STTMLAAIKMEVMTPSLESPDEGC 92
+R D R R+ ++ G +A ++GSA I T +LAA+K+EV P LE+P G
Sbjct: 26 GMRGDGRGRLDYRSLSVQAGVLAQSNGSARVTIAHNGTDVLAAVKVEVGEPGLEAPGAGR 85
Query: 93 VSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLD 152
V + P + V++ L ++ G ++L L +V GK W+V++D
Sbjct: 86 VEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMQGVGGLDLDALGIVDGKFCWVVFVD 145
Query: 153 IYCLDADGALFDAALLSAVAAFSNLQIPTVS 183
I L ADG L DA+ +A A + +IP V+
Sbjct: 146 ILVLQADGNLLDASSFAAYTALNTARIPKVT 176
>gi|213688370|ref|NP_001094195.1| exosome component 7 [Rattus norvegicus]
gi|149018124|gb|EDL76765.1| exosome component 7 [Rattus norvegicus]
Length = 291
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 17/247 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P EG ++F + CS P GR + +A L ++ ++L+ L +
Sbjct: 73 RPSEG--YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLRSLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCIRLSVENVPCIVTLCKIGCRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 262 KPGGAVL 268
K G L
Sbjct: 241 KVGKGSL 247
>gi|405123132|gb|AFR97897.1| exosome complex exonuclease rrp45 [Cryptococcus neoformans var.
grubii H99]
Length = 282
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 108/239 (45%), Gaps = 14/239 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
LAE R D R + R+ G G ++G T +LA + ++ P + P EG
Sbjct: 19 LAEGKRLDGRLPLQMRDVHYIFG---DELGCVECRLGKTAILAQVSAAIVKPRDDRPYEG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ I+ + P+ S + GRP + ++ + L +I + I+ + L ++ G+ W + L
Sbjct: 76 FLLINSEIGPMASSVYENGRPGDDEVMIGRLLEKSIRRTEAIDREALCILAGEKVWQLRL 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
++ L G L D A L+ +AA + + P V + ++++ + E+ PV
Sbjct: 136 TLHFLSDSGNLLDCAALAGMAALKHFRKPDVEVIGDEVII-----QHSPDERAPV----- 185
Query: 212 KLTLGGIPFSLTCILHKNY-ILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
L + P LT +N + DP+ E + +T+ L++ ++ L K GG L
Sbjct: 186 PLAIHHTPLCLTFAYFENLPPILDPSHVEVILCSGTLTLTLNAQREICVLSKAGGGPLG 244
>gi|28573444|ref|NP_725517.2| Rrp42 [Drosophila melanogaster]
gi|28380797|gb|AAF58076.3| Rrp42 [Drosophila melanogaster]
gi|85857716|gb|ABC86393.1| IP10364p [Drosophila melanogaster]
Length = 296
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 21/221 (9%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D RS R + G V++A GSA ++ +T +L +K E+ P+
Sbjct: 13 YILHGVEDDFRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPNPL 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQL----SDTISSSGMINLKELSLVG 142
+P+ G ++F + CS P +A++L + S N + L L+
Sbjct: 73 TPEFG--KLEFFVD--CSANATPEFEGRGGSDLAQELILSLQNAYESPLAFNYRTLCLIP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS---LDDGKIVMLPEEQKEE 199
G+ W +Y+DI L+ G L DA L+A AA N ++P V+ LD G ++ + +
Sbjct: 129 GQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLPRVTATMLDAGITDLIISDNPYD 188
Query: 200 NSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEE 240
+ ++ + +P +T +Y+L DP++EEE
Sbjct: 189 CT----------RIGIETVPLLVTVCKIGDYVLVDPSAEEE 219
>gi|345571178|gb|EGX53993.1| hypothetical protein AOL_s00004g652 [Arthrobotrys oligospora ATCC
24927]
Length = 353
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 141/343 (41%), Gaps = 76/343 (22%)
Query: 19 FRRLFPLRYFERHLAES--IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAI 76
FR++ P Y +RHL S RP+ RS S+ R+ T++ +++ A GSA+ + G T ++ I
Sbjct: 25 FRQISPALYLQRHLVHSPPTRPNGRSPSQCRDFTLTTNSLSHAHGSAVVRAGDTAVVCGI 84
Query: 77 KMEVMTPSLESPDEGCVSIDFHMPPI-----------------------------CSPLV 107
+ E++T + D+ +H P CS
Sbjct: 85 RGEILT--VAPGDDPSRFESYHSFPTSATHACGARGAGGASWGGLIIPNVELSTGCSKKY 142
Query: 108 RPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGG------------KAAWMVYLDIYC 155
G P A + QL + I+ + +++L L + K W +Y+D+ C
Sbjct: 143 PLGPPGGLAQTFSDQLHELINVTKLVSLDSLRIYDSDSDSSLPPTMKIKGYWSLYVDVLC 202
Query: 156 LDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTL 215
+ DG + DAA + VAA + ++P S + + + E S P++ +
Sbjct: 203 ISLDGNILDAAWYAIVAAIKSSRLPLASWNQAEERIFCHE-----SLSHPISLRQ----- 252
Query: 216 GGIPFSLTCIL--------HKN---YILADPTSEEESIMETLVTVVLDSSNQLVSLY--- 261
+PF+ T L H+N +L DP S EE ++T++ + L L
Sbjct: 253 -SLPFTTTFALIPLPRSEDHRNETAILLNDPDSYEEDEACEILTILSTAEFGLAGLRTRV 311
Query: 262 ----KPGGAVLAYTSAVQDCIALTRQR-VKELHQILEEAISGM 299
K GG + + ++ C L + + LH + + ++ M
Sbjct: 312 EKIEKRGGWKVGL-AQIESCAHLAASKAARYLHSLTHDQLTPM 353
>gi|68076189|ref|XP_680014.1| exoribonuclease PH [Plasmodium berghei strain ANKA]
gi|56500878|emb|CAH99972.1| exoribonuclease PH, putative [Plasmodium berghei]
Length = 281
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 125/277 (45%), Gaps = 14/277 (5%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
L+Y E + +IR D R+L R I+ + SADGS+ ++ IK+ ++ P
Sbjct: 4 LKYIEEGINSNIRVDGRTLLTYRTIEINKSILVSADGSSSVMNEENNVICGIKLSLLPPE 63
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGK 144
S DEG V++ C V R + + + + I+ K+L ++ K
Sbjct: 64 QHSIDEGFVNLQID----CPASVASNRIKKEHLQIMTSIIYDLCIKNNIDKKKLCVLPSK 119
Query: 145 AAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTV----SLDDGKIVMLPEEQKEEN 200
W + +++ L+ G L D ++ A +++ IP V +D+ + + K +
Sbjct: 120 FVWGIDINVMVLNGGGGLLDIISIAIYVALNDMNIPVVKAPKKIDE---LNMFHNTKSKE 176
Query: 201 SEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
E E V EK IP ++ N + D + EE ++E + V + SS + V+
Sbjct: 177 YELEIVENEKLPFPCENIPICISIGEINNKYIYDMSKIEEELVENVFVVAVTSSGKCVAF 236
Query: 261 YKPGGAVLAYTSAV---QDCIALTRQRVKELHQILEE 294
+K G + +S + ++ + +++ K++++ +++
Sbjct: 237 HKLYGISMEVSSILNMSENSVKISQNLFKKINEAIDK 273
>gi|195583790|ref|XP_002081699.1| GD11151 [Drosophila simulans]
gi|194193708|gb|EDX07284.1| GD11151 [Drosophila simulans]
Length = 281
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 126/277 (45%), Gaps = 25/277 (9%)
Query: 31 HLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDE 90
+ R D RS R + G V++A GSA ++ +T +L +K E+ P+ +P+
Sbjct: 2 RFQDDFRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPNPLTPEF 61
Query: 91 GCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQL----SDTISSSGMINLKELSLVGGKAA 146
G ++F + CS P +A++L + S N + L L+ G+
Sbjct: 62 G--KLEFFVD--CSANATPEFEGRGGSDLAQELILSLKNAYESPLAFNYRTLCLIPGQQC 117
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS---LDDGKIVMLPEEQKEENSEK 203
W +Y+DI L+ G L DA L+A AA N ++P V+ LD G ++ + + +
Sbjct: 118 WKLYIDILILECGGNLHDAVSLAAKAALFNTKLPRVTATMLDAGITDLIISDNPYDCT-- 175
Query: 204 EPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ---LVSL 260
++ + +P +T +Y+L DP++EEE + V + N L
Sbjct: 176 --------RIGIETVPLLVTVCKIGDYVLVDPSAEEEVCSTVSMVVSVSMRNGQAFLSGT 227
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
+ GG + + +++C+ L ++L ++L + ++
Sbjct: 228 HLTGGGAM-HRDTMRNCLELGLAIGEQLDRLLTKMLN 263
>gi|71031797|ref|XP_765540.1| exosome complex exonuclease Rrp45 [Theileria parva strain Muguga]
gi|68352497|gb|EAN33257.1| exosome complex exonuclease rrp45, putative [Theileria parva]
Length = 276
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 105/249 (42%), Gaps = 29/249 (11%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +R D RSL +I G++L G+T + I E++ P+ E P+EG
Sbjct: 28 LKNGLRIDGRSLDSHVYVSIDFDG---PPGTSLISFGNTVVFTCISQEIVEPNSERPNEG 84
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ + P S PG+ + + L + S ++L+ L + GK W + +
Sbjct: 85 FLFFNVETSPFTSESYEPGKTTDQEHNLIYFLENMFKESSCLDLETLCITSGKQVWALRV 144
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
++ L DG L A LSA+A+ + + P + L D E N + +
Sbjct: 145 YVHVLQDDGNLLSACSLSALASLLHYRKPLMELSD-----------ELNHSFYGLWHKGT 193
Query: 212 KLTLGGIPFSLTCIL--------------HKNYILADPTSEEESIMETLVTVVLDSSNQL 257
L + +P +T L ++L +P S EE +++T V+++ + ++
Sbjct: 194 PLNIYHVPMFVTVWLLEAPDHSLLDHNLSEYKFVL-EPNSFEEKLLKTQVSILFNQFGEV 252
Query: 258 VSLYKPGGA 266
+ +YK G
Sbjct: 253 LWIYKNGST 261
>gi|66824935|ref|XP_645822.1| hypothetical protein DDB_G0271100 [Dictyostelium discoideum AX4]
gi|60473944|gb|EAL71882.1| hypothetical protein DDB_G0271100 [Dictyostelium discoideum AX4]
Length = 526
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 27/237 (11%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R ++ R I G + G ++G T + AI +++ P E P+EG +
Sbjct: 22 RIDGRGVNDMRAIKIEFGK---SYGVVEVQLGKTRVFTAITCDIVEPKPERPNEGFYIFN 78
Query: 97 FHMPPICSPLVRPGRP----AEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLD 152
+ P+ S V +P +E ++ K L D S I+ + L ++ G W + +
Sbjct: 79 TDISPMSSVSVNVNQPNPMESELGRIIEKGLKD----SRAIDTEALCIISGSKVWSIKIA 134
Query: 153 IYCLDADGALFDAALLSAVAAFSNLQIPTVSL--DDGKIVMLPEEQKEENSEKEPVNKEK 210
I+ LD G L D A +S + A + + P V++ +D I L E+EPV
Sbjct: 135 IHVLDDCGNLLDCASISVMTALIHFRKPDVTVIGNDATIHSL--------DEREPV---- 182
Query: 211 RKLTLGGIPFSLTCILHKNYIL-ADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
L++ P S+T N I+ DP ++EES+M+ ++ ++ ++ + K GG
Sbjct: 183 -PLSIHHTPISITFGFFPNEIMIVDPDTKEESVMDGKLSFFVNIHKEICGVSKGGGT 238
>gi|380023350|ref|XP_003695486.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP42-like [Apis florea]
Length = 290
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 23/237 (9%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSI 95
R D R R+ I + GSA +IG+T +L IK+E+ P + P+EG +
Sbjct: 22 FRNDGRRQCEYRSMEIETKLMPQTHGSARLRIGNTDILVGIKVELDIPHADKPNEG--KL 79
Query: 96 DFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSS----GMINLKELSLVGGKAAWMVYL 151
+F + CS P + +A ++S+ ++++ +L+ L ++ K W +Y+
Sbjct: 80 EFFVD--CSATATPAFEGKGGDDLATEISNILTAAYQTRNAFDLRTLCILPHKKCWKIYV 137
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTV---SLDDGKIVMLPEEQKEENSEKEPVNK 208
D+ L G LFDA ++ AA ++ +IP + +LD G E + E
Sbjct: 138 DVLILQCGGNLFDAVGITVKAALNSTEIPKITAATLDGG----------EPDIELSDDPY 187
Query: 209 EKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+ +L P +T C + NYI+ DPT EEE + + + + S ++ S+ K G
Sbjct: 188 DCIQLDTSNYPIIVTLCKIGDNYII-DPTLEEEVCSASSIIMSVLPSGKISSVIKLG 243
>gi|156096300|ref|XP_001614184.1| exosome complex exonuclease [Plasmodium vivax Sal-1]
gi|148803058|gb|EDL44457.1| exosome complex exonuclease, putative [Plasmodium vivax]
Length = 281
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 127/283 (44%), Gaps = 18/283 (6%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
L+Y E + +IR D R+LS R I+ + SADGS+ ++ IK+ ++TPS
Sbjct: 4 LKYIENSINSNIRVDGRTLSTYRTIEINKNILVSADGSSSVMNEENNVICGIKLSLLTPS 63
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGK 144
L++PDEG +++ P + +V + +++ + D + I+ K++ ++
Sbjct: 64 LDAPDEGVINLQIDCP---ASVVANRIKKDHLQIMSSIIYD-LCLKNNIDRKKMCILPST 119
Query: 145 AAWMVYLDIYCLDADGALFDAALLSAVAAFSN----LQIPTVSLDDGKIVMLPEEQKEEN 200
W V +++ L+A G L D ++ A + + P +D+ K +
Sbjct: 120 FVWGVDINVMVLNAGGGLLDIISMAIYVALKDTVVPVVKPKKKIDESNTF---HHTKCAD 176
Query: 201 SEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
+ E V +K +P ++ N + D + EE ++E + V + SS + V+
Sbjct: 177 YQVEIVENQKTNFPYENVPICVSIGEINNKYVYDMSKVEEELVENIFVVAVTSSGKCVAF 236
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILE---EAISGME 300
+K G + S + +T + H + E EAI+ +E
Sbjct: 237 HKLYGISMEIASILN----MTENSSRISHHLFEKINEAIAKIE 275
>gi|156542409|ref|XP_001601196.1| PREDICTED: exosome complex component RRP42-like [Nasonia
vitripennis]
Length = 291
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 117/239 (48%), Gaps = 25/239 (10%)
Query: 35 SIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVS 94
+ R D RS + R + + GSA +IG+T +L +K+E+ TP +SP+EG
Sbjct: 21 NFRNDGRSRTDYRCMELETKLMDQVHGSARLRIGNTDILVGVKVEIDTPYPDSPNEG--K 78
Query: 95 IDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTIS----SSGMINLKELSLVGGKAAWMVY 150
I+F + CS P + +A ++S+ ++ S +NL +LS++ K W +Y
Sbjct: 79 IEFFVD--CSANATPSFEGKGGEDLANEISNVLALAYQSPHAMNLSQLSILPHKKCWKLY 136
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVS---LDDGKI-VMLPEEQKEENSEKEPV 206
+DI L+ G LFDA ++ AA + +IP V LD G+ ++L ++
Sbjct: 137 VDILILECGGNLFDAVAVAVKAALYSTEIPKVKGAMLDGGEADIVLSDDI---------- 186
Query: 207 NKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
E KL P +T C + N ++ DP+SEEE + V + + ++ S+ K G
Sbjct: 187 -YESEKLDTTNCPVLVTLCKIGDNCVV-DPSSEEEMCSSANIVVSVMPNGRISSIVKMG 243
>gi|340708517|ref|XP_003392871.1| PREDICTED: exosome complex component RRP42-like isoform 1 [Bombus
terrestris]
gi|340708519|ref|XP_003392872.1| PREDICTED: exosome complex component RRP42-like isoform 2 [Bombus
terrestris]
Length = 291
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 23/213 (10%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSI 95
R D R R+ I + GSA +IG+T +L IK+E+ P + +EG +
Sbjct: 22 FRNDGRRRCEYRSMEIETKLMPQTHGSARLRIGNTDILVGIKIELDVPHADRSNEG--KL 79
Query: 96 DFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSS----GMINLKELSLVGGKAAWMVYL 151
+F + CS P + +A ++S+ ++++ +L+ L ++ K W +Y+
Sbjct: 80 EFFVD--CSATATPAFEGKGGDDLATEISNILTAAYQTPNAFDLRTLCILPHKKCWKIYV 137
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIP---TVSLDDGKIVMLPEEQKEENSEKEPVNK 208
DI L G LFDA ++ AA ++ +IP T +LD G+ P+ + +++
Sbjct: 138 DILILQCGGNLFDAVGIAVKAALNSTEIPKITTATLDGGE----PDIELSDDA------Y 187
Query: 209 EKRKLTLGGIPFSLT-CILHKNYILADPTSEEE 240
+ +L P +T C + NYI+ DPTSEEE
Sbjct: 188 DCIQLDTSNYPIIVTLCKIGDNYIV-DPTSEEE 219
>gi|294873385|ref|XP_002766601.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
gi|239867633|gb|EEQ99318.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
Length = 418
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 114/248 (45%), Gaps = 18/248 (7%)
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVA 120
G A IG T + A + ++ +P P EG +SI+ P+ +P V P + A
Sbjct: 25 GQAECSIGKTRIRAVVTGQLTSPPSNRPREGRLSINVEAGPMAAPAVLPSGNSSGLVGSA 84
Query: 121 K---------QLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAV 171
+ QL + S ++++ L + G W + LD++ L +G + DAA +++
Sbjct: 85 QTPEGISLCNQLERMLKGSNAVDVEALCIQSGSLVWELRLDVHVLSDNGNVGDAAAIAST 144
Query: 172 AAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYI 231
A + + VS+ +G+I+ P+ S V+ +T IP SL +
Sbjct: 145 VALRHYRRAEVSVVNGEIIYKPDLDPIPLS----VHHMPIPVTFASIPSSLG---ENPLL 197
Query: 232 LADPTSEEESIMET--LVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELH 289
LADP+S EES+ + VV++ +L K GGA L + I L RVKE+
Sbjct: 198 LADPSSLEESLQGDGGQLVVVMNQYGELCGALKSGGASLMLHRDLMPAIRLATARVKEVT 257
Query: 290 QILEEAIS 297
+++E ++
Sbjct: 258 ALIDEKLA 265
>gi|83314648|ref|XP_730452.1| 3' exoribonuclease domain 1 [Plasmodium yoelii yoelii 17XNL]
gi|23490177|gb|EAA22017.1| 3' exoribonuclease family, domain 1, putative [Plasmodium yoelii
yoelii]
Length = 281
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 125/277 (45%), Gaps = 14/277 (5%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
L+Y E + +IR D R+L R I+ + SADGS+ ++ IK+ ++ P
Sbjct: 4 LKYIEEGINSNIRVDGRTLLTYRTIEINKSILVSADGSSSVMNEENNVICGIKLSLLPPE 63
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGK 144
S DEG V++ C V R + + + + I+ K+L ++ K
Sbjct: 64 PHSIDEGFVNLQID----CPASVASNRIKKEHLQIMTSIIYDLCIKNNIDKKKLCVLPSK 119
Query: 145 AAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTV----SLDDGKIVMLPEEQKEEN 200
W + +++ L+ G L D ++ A +++ IP V +D+ + + K +
Sbjct: 120 FVWGIDINVMVLNGGGGLLDIISIAIYVALNDMNIPVVKAPKKIDE---LNMFHNTKSKE 176
Query: 201 SEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
E E V EK IP ++ N + D + EE ++E + V + SS + V+
Sbjct: 177 YELEIVENEKLPFPCENIPICISIGEINNKYIYDMSKIEEELVENVFVVAVTSSGKCVAF 236
Query: 261 YKPGGAVLAYTSAV---QDCIALTRQRVKELHQILEE 294
+K G + +S + ++ + +++ K++++ +++
Sbjct: 237 HKLYGISMEVSSILNMSENSVKISQNLFKKINEAIDK 273
>gi|24642649|ref|NP_573163.1| Rrp45 [Drosophila melanogaster]
gi|19527801|gb|AAL90015.1| AT07738p [Drosophila melanogaster]
gi|22832411|gb|AAF48665.2| Rrp45 [Drosophila melanogaster]
gi|220949552|gb|ACL87319.1| Rrp45-PA [synthetic construct]
gi|220958432|gb|ACL91759.1| Rrp45-PA [synthetic construct]
Length = 412
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 124/268 (46%), Gaps = 17/268 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+ ++ R D R + +R+ ++ G GS +G T +LA + E+ P+L P+EG
Sbjct: 24 VKQNQRLDGRRSNESRDVELTFGKDW---GSVAVSMGDTKVLAQVTCEMGPPALSRPNEG 80
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ ++ ++ + + + + L T SS I+L+ L + K W + +
Sbjct: 81 KIHLNVYLGGVAFLDEAHTTHDQRSLKLNSLLERTFRSSRSIDLESLCVAVEKHVWCIRV 140
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
++ L+ DG L+DA+ ++ +AA + + P V DG++ + +++ +E
Sbjct: 141 NVNVLNHDGNLYDASTIATLAALMHFRRPDVWYKDGELRIFKKKE-----------REFI 189
Query: 212 KLTLGGIPFSLTCILHKNYI--LADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
L P S+T ++K+ + + DPT EE+ ++++ + +S +L SL GG
Sbjct: 190 PLLFHHYPVSVTYCVYKSSVQPILDPTLLEENAADSVIVLSFNSFQELCSL-TAGGTAPT 248
Query: 270 YTSAVQDCIALTRQRVKELHQILEEAIS 297
+ C R K L + +A++
Sbjct: 249 NARIIMQCARNAAVRCKSLLNFVRKALA 276
>gi|30962875|gb|AAH52656.1| Exosome component 7 [Mus musculus]
Length = 291
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 116/247 (46%), Gaps = 17/247 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++L+ L +
Sbjct: 73 KPNEG--YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLRSLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA + +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFDTRIP-------RVRVLEDEEGAKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCIRLSVENVPCIVTLCKIGCRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 262 KPGGAVL 268
K G L
Sbjct: 241 KVGKGSL 247
>gi|198471344|ref|XP_001355587.2| GA21908 [Drosophila pseudoobscura pseudoobscura]
gi|198145876|gb|EAL32646.2| GA21908 [Drosophila pseudoobscura pseudoobscura]
Length = 398
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 122/273 (44%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ ++ + +S R D R +R+ ++ G GS + +G T ++A + ++ TP+
Sbjct: 18 KFIQQAVKQSQRLDGRKSGESRDVQLTFGGEY---GSVVVSLGDTKVMAQVTCDMGTPTT 74
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
P+EG + + + + + + + L T +S ++L+ L +
Sbjct: 75 SRPNEGKLQLYVTLAGVSYLDSVQKTHDKRSLTLNSLLERTFRTSRCVDLESLCVASELH 134
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D+ L+ DG L+DA+ ++ +AA + + P V+ DG++ E++
Sbjct: 135 VWCIRVDVNVLNHDGNLYDASTVAVLAALMHFRRPDVTFTDGELRTYTEKE--------- 185
Query: 206 VNKEKRKLTLGGIPFSLT-CILHKNYI-LADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
++ L P S+T CI N+ DPT EE+ ++ + + +S +L +L
Sbjct: 186 --RDMIPLLFLHYPVSVTYCIYTSNFQPFVDPTLLEENTADSTIILSFNSYQELCTL-NA 242
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG V + C R K + + +A+
Sbjct: 243 GGTVPTDVRTIMQCARSAANRCKAMVTFIRKAL 275
>gi|157169424|ref|XP_001651510.1| exosome complex exonuclease rrp42 (ribosomal RNA processing protein
42 [Aedes aegypti]
gi|108878402|gb|EAT42627.1| AAEL005851-PA [Aedes aegypti]
Length = 299
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 21/236 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D R+ R + V A GSA ++ +T +L A+K ++ PS +
Sbjct: 13 YILHGIQKDYRNDGRTNRDYRPMELETDIVVHAMGSARLRLANTDILVAVKADIDAPSPD 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTIS----SSGMINLKELSLVG 142
P EG I+F + CS P +A ++S+T+S S +L L ++
Sbjct: 73 RPKEG--KIEFFVD--CSANATPDFEGRGGEELATEISNTLSKAYLSQQAFDLSPLCILA 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS---LDDGKIVMLPEEQKEE 199
W +Y+DI L+ G LFDA L+ AA + ++P VS LD G + ++ +
Sbjct: 129 KHQCWKLYVDILILECGGNLFDAVSLAVKAALYSTKLPRVSSAELDGGAMDIILSD---- 184
Query: 200 NSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSN 255
+P + E +L + P +T +Y + DP++EEE V + + N
Sbjct: 185 ----DPYDCE--RLNIQTAPLLVTVCKIGDYCVVDPSAEEEECSAISVVIGVSRKN 234
>gi|402217991|gb|EJT98069.1| ribosomal protein S5 domain 2-like protein [Dacryopinax sp. DJM-731
SS1]
Length = 299
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 122/284 (42%), Gaps = 34/284 (11%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+ + +R D RS +AR TTI G ++ G IG T ++A I V P + P EG
Sbjct: 19 IQQGLRVDGRSPLQARKTTIRFG---NSLGWVECSIGETRVVAQISATVTRPYFDRPFEG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL------------- 138
+ I P+ S GRP+E +A+ L TI S ++ + L
Sbjct: 76 IIVIHTEFSPMASSAYETGRPSEEEITMARILEKTIRRSEALDREALCILAGQKVSVPHR 135
Query: 139 ----SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPE 194
+V G+ W + L I L +G L D A ++A+AA + + P V + + M
Sbjct: 136 ETNTKIVRGQQVWTLRLTIQFLADEGNLLDCACMAAMAALRHFRKPEVEVVGDEATMFSP 195
Query: 195 EQKEENSEKEPVNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLD 252
E E+ PV L L P S + +N + DP+ EE + +T+ L+
Sbjct: 196 E------ERAPV-----PLALHHQPLCVSFVSLGPRNTPVMDPSRLEEQLAHGKMTISLN 244
Query: 253 SSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+ ++ L K GG L V + + RV+++ +L ++
Sbjct: 245 AQKEICVLQKAGGVALP-ADEVLHAVNVAVSRVRDMSDLLNRSL 287
>gi|82524833|ref|NP_001032342.1| exosome component 7 [Xenopus (Silurana) tropicalis]
gi|89267936|emb|CAJ82816.1| exosome component 7 [Xenopus (Silurana) tropicalis]
Length = 291
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 127/280 (45%), Gaps = 20/280 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + +R D R R + V++ GSA KIG T +L +K E+ TP LE
Sbjct: 13 YVLHGVQDDLRTDGRGCEDYRCIEVETDVVSNTTGSARVKIGHTDVLVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAEA-APVVAKQLSDTISSSGMINLKELSLVG 142
EG ++F + CS P GR E +A L + I+L+ L +
Sbjct: 73 RAGEG--YLEFFVD--CSANATPEFEGRGGEELGAEIAFMLYKIFDNRSSIDLESLCIQE 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFD ++ AA N +IP K+ +L +++ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDTISVAVKAALFNARIP-------KVRILEDDEGGKDFE 181
Query: 203 KEPVNKEKRKLTLGGIP--FSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
+ +L + +P +L+ I H++ + D T +EE+ + + + S L +
Sbjct: 182 LSDDPYDCVRLNVVNVPCIVTLSRIGHRHVV--DATLQEEACSVASLLIAVTSKGILTCM 239
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
K G L S + + I ++ K LH L+ A++ E
Sbjct: 240 RKIGKGSLDPES-IFEMIETGKRVAKSLHTSLQSALNQEE 278
>gi|56970613|gb|AAH88546.1| LOC496941 protein, partial [Xenopus (Silurana) tropicalis]
Length = 289
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 127/280 (45%), Gaps = 20/280 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + +R D R R + V++ GSA KIG T +L +K E+ TP LE
Sbjct: 11 YVLHGVQDDLRTDGRGCEDYRCIEVETDVVSNTTGSARVKIGHTDVLVGVKAEMGTPKLE 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAEA-APVVAKQLSDTISSSGMINLKELSLVG 142
EG ++F + CS P GR E +A L + I+L+ L +
Sbjct: 71 RAGEG--YLEFFVD--CSANATPEFEGRGGEELGAEIAFMLYKIFDNRSSIDLESLCIQE 126
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFD ++ AA N +IP K+ +L +++ ++ E
Sbjct: 127 REHCWVLYVDVLLLECGGNLFDTISVAVKAALFNARIP-------KVRILEDDEGGKDFE 179
Query: 203 KEPVNKEKRKLTLGGIP--FSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
+ +L + +P +L+ I H++ + D T +EE+ + + + S L +
Sbjct: 180 LSDDPYDCVRLNVVNVPCIVTLSRIGHRHVV--DATLQEEACSVASLLIAVTSKGILTCM 237
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
K G L S + + I ++ K LH L+ A++ E
Sbjct: 238 RKIGKGSLDPES-IFEMIETGKRVAKSLHTSLQSALNQEE 276
>gi|124513540|ref|XP_001350126.1| exoribonuclease PH, putative [Plasmodium falciparum 3D7]
gi|23615543|emb|CAD52535.1| exoribonuclease PH, putative [Plasmodium falciparum 3D7]
Length = 278
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 123/287 (42%), Gaps = 24/287 (8%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
L Y E + +IR D R+L R+ I+ + S DGS+ ++ IK+ ++TP
Sbjct: 4 LNYIEDSINCNIRIDGRTLLTYRSIEINKNILVSGDGSSSVINEENNVICGIKLSLITPD 63
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGK 144
+++ DEG V++ C V R + + + IN K L ++ GK
Sbjct: 64 VDTYDEGNVNLQID----CPASVAANRIKKDHLQTMTTIIYNLCIKNNINKKILCILPGK 119
Query: 145 AAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKE 204
AW V +++ L+A G L D ++ A + P IV +E +EEN+ E
Sbjct: 120 FAWSVDINVMVLNAGGGLLDIISIAIYVALKDTFFP--------IVKPKKEIEEENTFHE 171
Query: 205 PVNK---------EKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSN 255
NK E IP ++ N + D + EE +++ + V + S
Sbjct: 172 ISNKDYQLEIVENEHVNFPYENIPICISIGEINNKYIYDMSKVEEELVQNIFVVAITSKG 231
Query: 256 QLVSLYKPGGAVLAYTSAV---QDCIALTRQRVKELHQILEEAISGM 299
+ V+ +K G + +S + ++ ++ ++HQ L++ + M
Sbjct: 232 KCVAFHKLYGISMEISSILNITENSSKISHTLFDKIHQALDKIHANM 278
>gi|195168570|ref|XP_002025104.1| GL26867 [Drosophila persimilis]
gi|194108549|gb|EDW30592.1| GL26867 [Drosophila persimilis]
Length = 398
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 122/273 (44%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ ++ + +S R D R +R+ ++ G GS + +G T ++A + ++ TP+
Sbjct: 18 KFIQQAVKQSQRLDGRKSGESRDVQLTFGGEY---GSVVVSLGDTKVMAQVTCDMGTPTT 74
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
P+EG + + + + + + + L T +S ++L+ L +
Sbjct: 75 SRPNEGKLQLYVTLAGVSYLDSVQKTHDKRSLTLNSLLERTFRTSRCVDLESLCVASELH 134
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D+ L+ DG L+DA+ ++ +AA + + P V+ DG++ E++
Sbjct: 135 VWCIRVDVNVLNHDGNLYDASTVAVLAALMHFRRPDVTFTDGELRTYTEKE--------- 185
Query: 206 VNKEKRKLTLGGIPFSLT-CILHKNYI-LADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
++ L P S+T CI N+ DPT EE+ ++ + + +S +L +L
Sbjct: 186 --RDMIPLLFLHYPVSVTYCIYTSNFQPFVDPTLLEENTADSTIILSFNSYQELCTL-NA 242
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG V + C R K + + +A+
Sbjct: 243 GGTVPTDVRTIMQCARSAANRCKAMVTFVRKAL 275
>gi|255718091|ref|XP_002555326.1| KLTH0G06644p [Lachancea thermotolerans]
gi|238936710|emb|CAR24889.1| KLTH0G06644p [Lachancea thermotolerans CBS 6340]
Length = 305
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 115/273 (42%), Gaps = 37/273 (13%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++ E+E+ A F + L +++R D+R R+ I +G G +G
Sbjct: 1 MAKEVEIPAAESKFVIEC----LRQNLRLDSRKFDEFRSVEIELG---DDYGDVTVTMGK 53
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGR-PAEAAPVVAKQLSDTIS 128
T + I + P + P EG I P+ P G E + ++ + +
Sbjct: 54 TKVHCRISCTITQPYEDRPFEGLFFISTETSPMAGPQFENGNNTGEDEVLCSRIIEKAVR 113
Query: 129 SSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGK 188
SG ++++ L +V G W V D++ L+ DG DA+ ++ + + + P VS+ +
Sbjct: 114 RSGALDVEGLCIVAGSKCWAVRADVHFLNCDGGFIDASCIAVMVGLLHFKKPDVSVSGEQ 173
Query: 189 IVMLPEEQKEENSEKEPV----------------NKEKRKLTLGGIPFSLTCILHKNYIL 232
+ + P + E+EPV N E + + G S CI+
Sbjct: 174 VTIHPVD------EREPVPLGVLHVPICVSFSFFNPEDAEENIKGESNSEICII------ 221
Query: 233 ADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
D T +EE + + +TV L+ + ++V + K GG
Sbjct: 222 -DATLKEELLRDGTLTVTLNKNREVVQVSKAGG 253
>gi|66814304|ref|XP_641331.1| hypothetical protein DDB_G0280251 [Dictyostelium discoideum AX4]
gi|74855928|sp|Q54VM4.1|EXOS7_DICDI RecName: Full=Putative exosome complex exonuclease RRP42; AltName:
Full=Exosome component 7; AltName: Full=Ribosomal
RNA-processing protein 42
gi|60469358|gb|EAL67352.1| hypothetical protein DDB_G0280251 [Dictyostelium discoideum AX4]
Length = 324
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 120/290 (41%), Gaps = 64/290 (22%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEV------ 80
+ ++ + +IR D R+ RN I G + A+GSA K+ T +L +K E+
Sbjct: 11 FIQQGVENNIRSDGRNRVDYRNFAIETGEIIHANGSARVKLSQTEVLVGVKAEITHIQSE 70
Query: 81 MTPSLESPDEGCVSIDFHMPPICSPLVRP---GRPAE--------------AAPVVAKQL 123
+T +L+ D S C P P G+ +E + P V K L
Sbjct: 71 ITSNLQQSD---TSKRLVFSVNCCPSASPEFEGKGSEFLNIELSKQLERLYSHPNVIKNL 127
Query: 124 -----------------------------SDTISSSGMINLKELSLVGGKAAWMVYLDIY 154
D I++SG N S+V GK W +Y+D
Sbjct: 128 KLTNPIISNNNNNNNKIKEAEEGKEKEKEGDIITNSGDDNC--FSIVSGKYYWTLYVDAI 185
Query: 155 CLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLT 214
LD+DG LFDA ++ +A N +IP V G+ EE E S+ +P ++ L+
Sbjct: 186 VLDSDGNLFDALSIACRSALQNTRIPRVKAIQGEY----EEITFEVSD-DP--EDTLSLS 238
Query: 215 LGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+ +P +T N + D T +EE M +TV ++S + S+ K G
Sbjct: 239 IDNVPICVTLTKIGNQFVIDTTLQEELCMNARLTVGVNSLANICSIQKGG 288
>gi|195379528|ref|XP_002048530.1| GJ11305 [Drosophila virilis]
gi|194155688|gb|EDW70872.1| GJ11305 [Drosophila virilis]
Length = 423
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 126/276 (45%), Gaps = 18/276 (6%)
Query: 24 PLRYF-ERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMT 82
P R F + + ++ R D R + R+ ++ GA G+ IG T +LA + ++ T
Sbjct: 15 PERNFIQGAVKQNTRFDGRKSNEFRDVKLTFGADW---GTVAVSIGETKVLAQVSCDIGT 71
Query: 83 PSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVG 142
PS +EG + ++ + + + + L T SS ++L+ L +
Sbjct: 72 PSSARANEGTLFLNVDIKGVAFLDEAQATHDQRFLTLNSLLERTFKSSRCLDLESLCIAV 131
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
++ W V +DI L+ DG L+DA+ ++A+AA + + P VS + +I SE
Sbjct: 132 EQSVWCVRVDINVLNHDGNLYDASTIAALAALMHFRRPEVSYVEEEIRTF--------SE 183
Query: 203 KEPVNKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
+E +E L P S+T ++K + L DPT EE+ ++++ + +S +L +L
Sbjct: 184 RE---RELLPLLFLHYPVSVTYCVYKSSSQPLVDPTLLEENAADSVIVLSFNSYQELCTL 240
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG + C R K L Q + +A+
Sbjct: 241 -NAGGTAPTNVRTIMQCARSAASRSKALVQFIRKAL 275
>gi|195351560|ref|XP_002042302.1| GM13365 [Drosophila sechellia]
gi|194124145|gb|EDW46188.1| GM13365 [Drosophila sechellia]
Length = 405
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 126/277 (45%), Gaps = 18/277 (6%)
Query: 24 PLRYF-ERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMT 82
P R F + + ++ R D R + +R+ ++ G GS +G T ++A + E+
Sbjct: 15 PERSFVQLAVKQNQRLDGRRSNESRDVELTFGTDW---GSVAVSMGDTKVMAQVTCEMGP 71
Query: 83 PSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+L P+EG + ++ + + + + + L T SS I+L+ L +
Sbjct: 72 PALSRPNEGKLHLNVLLGGVAFLDEAYSTHDQRSLKLNSLLERTFRSSKSIDLESLCVAA 131
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
K W + +++ ++ DG L+DA+ ++ +AA + + P VS DG++ + + +
Sbjct: 132 EKHVWCIRVNVNVINHDGNLYDASSIATLAALMHFRRPDVSYKDGELCIFKQNE------ 185
Query: 203 KEPVNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSL 260
+E L P S+T ++K+ + DPT EE+ ++++ + +S +L SL
Sbjct: 186 -----REFMPLLFHHYPVSVTYCVYKSSGQPILDPTLLEENAADSVIVLSFNSYQELCSL 240
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
GG V C R K L + +A++
Sbjct: 241 -TAGGTAPTNAPTVMQCARNAAARCKSLLDFVRKALA 276
>gi|213512498|ref|NP_001134892.1| Exosome complex exonuclease RRP42 [Salmo salar]
gi|209736940|gb|ACI69339.1| Exosome complex exonuclease RRP42 [Salmo salar]
Length = 291
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 128/278 (46%), Gaps = 24/278 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + +R D R R+ I V++ DGSA +G T +L +K E+ P
Sbjct: 13 YILHGVRDDLRVDGRGCEDYRHMEIETEMVSNTDGSAKVTLGHTDVLVGVKAEMGKPRPM 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI----SSSGMINLKELSLVG 142
P EG ++F + CS P + +LS+T+ ++ ++LK L +
Sbjct: 73 VPGEG--YLEFFVD--CSANATPEFEGRGGDELGMELSNTLYKVFNNRYSVDLKSLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
G+ W++Y+D+ L DG LFDA ++ AA N +IP V + + + E KE
Sbjct: 129 GEHCWVLYVDVLLLQCDGNLFDAISVAIKAALFNTKIPKVHISEDE-----EGGKEIELS 183
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+P + +L + +P +T C + +++ D T +E++ + + + + +
Sbjct: 184 DDPYD--CMRLNVENVPCIVTLCKVGHRHVV-DATLQEKACSVASLIISVTRKGTVTCVR 240
Query: 262 KPGGAVLAYTSAVQDCIALTRQRV-KELH----QILEE 294
K GG L S + + T +RV K LH Q+L+E
Sbjct: 241 KVGGGSLDPESIFE--MTETGKRVGKALHAPLMQLLQE 276
>gi|195488381|ref|XP_002092290.1| GE11745 [Drosophila yakuba]
gi|194178391|gb|EDW92002.1| GE11745 [Drosophila yakuba]
Length = 296
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 21/221 (9%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D RS R + G V++A GSA ++ +T +L +K E+ P+
Sbjct: 13 YILHGVEDDFRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPNPL 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQL----SDTISSSGMINLKELSLVG 142
+PD G ++F + CS P +A++L + S + + L L+
Sbjct: 73 TPDFG--KLEFFVD--CSANATPEFEGRGGSDLAQELILSLQNAYESPLAFDYRTLCLIP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS---LDDGKIVMLPEEQKEE 199
G+ W +Y+DI L+ G L DA L+A AA N ++P V+ LD G ++ + +
Sbjct: 129 GQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLPRVTATLLDAGITDLIISDNPYD 188
Query: 200 NSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEE 240
+ ++ + +P +T +Y L DP++EEE
Sbjct: 189 CT----------RIGIETVPLLVTVCKIGDYCLVDPSAEEE 219
>gi|384499441|gb|EIE89932.1| hypothetical protein RO3G_14643 [Rhizopus delemar RA 99-880]
Length = 204
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + R D R + R+T I +G S G A ++G T + A + EV+ P + P EG
Sbjct: 19 LKQGKRVDGREVYDMRSTEIVLG---SDYGYAEVRLGKTKVAANVTAEVVRPYADRPTEG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ + + P+ +P G +E ++++ + + S I+ + L +V G+ W + +
Sbjct: 76 ILIFNTEISPMAAPTFESGSRSEEEVLISRVVEKALRRSRAIDTEGLCIVSGEKVWQIRV 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSL 184
D+ LD DG L D A ++A+ A + + P V++
Sbjct: 136 DLMFLDHDGNLVDCACIAAITALLHFRRPDVTV 168
>gi|413943885|gb|AFW76534.1| hypothetical protein ZEAMMB73_585681 [Zea mays]
Length = 280
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 14/161 (8%)
Query: 109 PGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALL 168
PGRP E+ + + + + S ++++ L +V GK W V +D++ LD G L DAA +
Sbjct: 8 PGRPGESTIELGRVIDRGLRESRAVDMEFLCVVAGKHVWSVRVDLHILDNGGNLIDAANI 67
Query: 169 SAVAAFSNLQIP--TVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL 226
A+AA S P TV DDG+ V + +P ++ LT+ +P +T
Sbjct: 68 VALAALSTFWRPECTVGGDDGQQVTV----------HDPEVRDLLPLTIHHMPIVVTFAY 117
Query: 227 --HKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
N ++ DPT +EE++M +T +++S+ + ++ K GG
Sbjct: 118 FGEGNIVVLDPTYKEEAVMGGRMTAIVNSNGDVCAIQKAGG 158
>gi|390595104|gb|EIN04511.1| ribosomal protein S5 domain 2-like protein [Punctularia
strigosozonata HHB-11173 SS5]
Length = 290
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 124/280 (44%), Gaps = 32/280 (11%)
Query: 32 LAESIRPDARSLSRARNTTIS----MGAVASADGSALAKIGSTTMLAAIKMEVMTPSLES 87
L +S R D R L R I+ MG V A +G T ++A I+ ++ P E
Sbjct: 18 LRQSRRLDGRRLLDMRKPIITFNEEMGYVEVA-------LGKTKVMAHIESRLVRPPPER 70
Query: 88 PDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAW 147
P EG +SI + P+ S GRP+E + + L I S ++ + L ++ G+ W
Sbjct: 71 PYEGIISIHSEVSPMASSEYEAGRPSEEEVTITRMLDKVIRRSDTVDKESLCILAGQVVW 130
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVN 207
+ L ++ L G + D A L+++ A + + P V + +V+ + E+ PV
Sbjct: 131 HLRLTLHFLADAGNVLDCACLASIVALRHFRRPEVEVVGEDVVL------HQPDERAPV- 183
Query: 208 KEKRKLTLGGIPFSLT-CILH--------KNYILADPTSEEESIMETLVTVVLDSSNQLV 258
L + PF T H + + DP+ E+++ ++V L++ +L
Sbjct: 184 ----PLAMHHTPFCFTFAFFHPPSSSTVDEIITVLDPSLLEQTLCGGTMSVALNAQRELC 239
Query: 259 SLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISG 298
+ K GG LA + + L Q+ K + + +E+ ++
Sbjct: 240 VVQKAGGVPLA-QHEILHVVNLAVQQAKLMERFVEDTLAS 278
>gi|328866220|gb|EGG14605.1| Putative exosome complex exonuclease RRP45 [Dictyostelium
fasciculatum]
Length = 469
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 109/235 (46%), Gaps = 15/235 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+ + +R D R L R+ IS G G ++G T + ++ EV P E P+EG
Sbjct: 17 IQQGLRIDGRRLDDMRDVKISFGKEY---GMVEVQLGRTRVYTSVSCEVAEPRPERPNEG 73
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ ++ + + V GR A + + + + S I+ + L +V G+ W +
Sbjct: 74 FFVFNTNISQMSNVEVDIGRSNPAELELGRLVERGLKESRAIDTEALCIVAGQKVWRIVT 133
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
+I+ LD G L D A +S + A + + P V+L + + E E+EPV
Sbjct: 134 NIHILDDCGNLLDCASISVITALLHFRKPDVTLVGNEATIHTLE------EREPV----- 182
Query: 212 KLTLGGIPFSLTC-ILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
L++ P S+T + ++ DP ++EE +++ ++ +++ ++ + K GG
Sbjct: 183 PLSIHHYPVSVTFGFFPDSLMIVDPDAKEEMVIDGKLSFLVNVHKEICGVSKSGG 237
>gi|391336427|ref|XP_003742582.1| PREDICTED: exosome complex component RRP42-like [Metaseiulus
occidentalis]
Length = 289
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 121/265 (45%), Gaps = 16/265 (6%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
+++R D R R+ + +GA + GS+ +I +T +L IK E+ P +PD G +
Sbjct: 20 DNLRCDGRGCLDYRHIELELGAAPNCSGSSHVRIANTDVLVGIKAEIAAPDHAAPDRGRI 79
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDI 153
+ P E +A L++ S ++L L +V + W++++DI
Sbjct: 80 EFFVDLTANADPEFEGTGGDELGQQIAGALAEAYVSKRFLDLSSLCIVKNQQVWVLFVDI 139
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIP--TVSL-DDGKIVMLPE-EQKEENSEKEPVNKE 209
L+ G+L+DA ++ AA +L+IP TVS+ +DGK PE E ++ +EP
Sbjct: 140 LILELGGSLYDAVSIAVKAALYDLRIPKLTVSIGEDGK----PEIEVSDDPHTQEP---- 191
Query: 210 KRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
L + +P +T + + D + EE + + + ++ + K G L
Sbjct: 192 ---LAIANVPCFVTLSKIGSQFVVDVSQEEAECSTVNMCCAIAPNGRMATTMKTGVGSLH 248
Query: 270 YTSAVQDCIALTRQRVKELHQILEE 294
S ++ + L ++ LH+ L +
Sbjct: 249 PDSLIE-ALQLAQEIGVALHKALHK 272
>gi|345321857|ref|XP_003430500.1| PREDICTED: exosome complex component RRP42-like [Ornithorhynchus
anatinus]
Length = 276
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 8/152 (5%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D RS R + V++ GSA K+G T +L +K E+ TP LE P EG ++
Sbjct: 8 RVDGRSCEDYRCAEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPKEG--FLE 65
Query: 97 FHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLD 152
F + CS P GR E +A L ++ I+L+ L + + W++Y+D
Sbjct: 66 FFVD--CSANAAPEFEGRGGDELGTEIANTLYRIFNNKSSIDLESLCISPREHCWVLYVD 123
Query: 153 IYCLDADGALFDAALLSAVAAFSNLQIPTVSL 184
+ L+ G LFDA ++ AA N +IP V +
Sbjct: 124 VLLLECGGNLFDAISIAVKAALFNTRIPRVQV 155
>gi|207346511|gb|EDZ72988.1| YDR280Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 212
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 96/212 (45%), Gaps = 21/212 (9%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L ++ R D RS + R+ I+ G G K+G+T + I ++ P + P EG
Sbjct: 19 LRQNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQPYEDRPFEG 75
Query: 92 CVSIDFHMPPICSPLVRPGR-PAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVY 150
I + P+ G E + ++ + ++ SG ++++ L +V G W V
Sbjct: 76 LFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVR 135
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK 210
D++ LD DG DA+ ++ +A + + P +++ +I++ P +E+EPV
Sbjct: 136 ADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHPV------NEREPV---- 185
Query: 211 RKLTLGGIPFSLTCILHKNYILADPTSEEESI 242
L + IP +T + +P EE+I
Sbjct: 186 -PLGILHIPICVT------FSFFNPQDTEENI 210
>gi|224013774|ref|XP_002296551.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968903|gb|EED87247.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 374
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 149/355 (41%), Gaps = 64/355 (18%)
Query: 2 GLPNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVA-SAD 60
G AS S E +DA+R L P Y ++++RPD R +R T+ + ++
Sbjct: 16 GEHKASNSSSLEWILDAYRSLEPRNYINEFTSQNVRPDGRPFHTSRPVTVLTSFLNRNSS 75
Query: 61 GSALAKIG---------STTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPL----- 106
GSA+ +G ST ++AA + V P +P G + + P+ P
Sbjct: 76 GSAMVTLGGDDGSDNSSSTRVIAACTLLVGHPGPSTPTHGDIDVLVTASPLSGPRFDCMG 135
Query: 107 --------------------------VRPGRPAEA-APVVAKQLSD----TISSSGMINL 135
+ P P+ + P K + T+ SS I+
Sbjct: 136 RESMDAANAFYNYNSVSGEKDDGVVQLNPETPSSSPQPTDTKDIESWIRRTLRSSRFIDP 195
Query: 136 KELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD--DGKIVMLP 193
EL + GK AW + + I ++ DG + DAALL A AA +L++P V +D +G +V +
Sbjct: 196 TELGIEPGKLAWRIRISIQIINHDGNVADAALLCACAALGDLKLPMVEVDRREGGVVRIV 255
Query: 194 EEQKEE----NSEKEPVNKEKRKLTLGGIPFSLTCILHKN-----------YILADPTSE 238
+E + + K+ ++ R LTLG +P LT + N +L DPT
Sbjct: 256 KEDEAQVMNGGRNKDVEMRKGRSLTLGPLPVPLTIAILPNIKSKTSASESSILLVDPTRL 315
Query: 239 EESIME-TLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
EE + +T+V +++ ++V +K G + + R KEL ++
Sbjct: 316 EEDVSSGNTITMVCNANEEIVEFHKRGSESRLSMDQIAAVACMGFGRAKELEALV 370
>gi|194882669|ref|XP_001975433.1| GG20559 [Drosophila erecta]
gi|190658620|gb|EDV55833.1| GG20559 [Drosophila erecta]
Length = 296
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 103/221 (46%), Gaps = 21/221 (9%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D RS R + G V++A GSA ++ +T +L +K E+ P+
Sbjct: 13 YILHGVEDDFRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPNPL 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQL----SDTISSSGMINLKELSLVG 142
+P+ G ++F + CS P +A++L + S + + L L+
Sbjct: 73 TPEFG--KLEFFVD--CSANATPEFEGRGGSDLAQELILSLQNAYESPLAFDYRTLCLIP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS---LDDGKIVMLPEEQKEE 199
G+ W +Y+DI L+ G L DA L+A AA N ++P V+ LD G ++ + +
Sbjct: 129 GQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLPRVTATMLDAGITDLIISDNPYD 188
Query: 200 NSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEE 240
+ ++++ +P +T +Y L DP++EEE
Sbjct: 189 CT----------RISIETVPLLVTVCKVGDYCLVDPSAEEE 219
>gi|430811931|emb|CCJ30637.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 250
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 93/184 (50%), Gaps = 14/184 (7%)
Query: 119 VAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQ 178
V+ + I S M++ + L ++ GK W + D++ LD DG L DA ++ VAA + +
Sbjct: 70 VSSIIDKAIRRSHMLDKESLCIIYGKQCWSIRADVHYLDHDGNLIDATSIAVVAALYHFK 129
Query: 179 IPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYI-LADPT 236
P V+++ K+++ E E+ PV L L IP S+T ++N I L D T
Sbjct: 130 KPVVTVEGEKVIVHSIE------ERVPV-----PLILTHIPISITFSFFNENQISLMDTT 178
Query: 237 SEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+EE + E + + L+ + ++ + K GG +L TS + C+ L ++ E+ L E +
Sbjct: 179 LQEEKLREGSMVITLNKNKEICQISKVGGVILQ-TSHILKCLQLASKKALEITNYLNEKL 237
Query: 297 SGME 300
E
Sbjct: 238 KENE 241
>gi|444512849|gb|ELV10190.1| Exosome complex component RRP42 [Tupaia chinensis]
Length = 308
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 113/240 (47%), Gaps = 17/240 (7%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E +R D R R+ + V++ GSA K+G T +L +K E+ TP LE P EG
Sbjct: 37 EDLRVDGRGCEDYRSVEVETDVVSNTSGSARVKLGHTDILVGVKAEMSTPKLEKPSEG-- 94
Query: 94 SIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMV 149
++F + CS P GR + +A L ++ ++L+ L + + W +
Sbjct: 95 YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLRSLCISPREHCWAL 152
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKE 209
Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E +
Sbjct: 153 YVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGSKDIELSDDPYD 205
Query: 210 KRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
+L++ +P +T C + +++ D T +EE+ + + + S + + K G L
Sbjct: 206 CIRLSVENVPCIVTLCKIGCRHVV-DATLQEEACSLASLLLAVTSKGVVTCVRKVGKGSL 264
>gi|194891452|ref|XP_001977495.1| GG18224 [Drosophila erecta]
gi|190649144|gb|EDV46422.1| GG18224 [Drosophila erecta]
Length = 415
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 124/277 (44%), Gaps = 18/277 (6%)
Query: 24 PLRYF-ERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMT 82
P R F + + ++ R D R + R+ ++ G S G+ +G T +L + ++ T
Sbjct: 15 PERNFVQLAVKQNQRFDGRRSNECRDVELTFG---SDWGTVAVSMGDTKVLTRVTCDMGT 71
Query: 83 PSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+ P+EG ++ ++ + + + + L T SS ++L+ L +
Sbjct: 72 PATSRPNEGKFQLNVNLAGVAFLDELQTTHDQRSLTLNSLLERTFRSSRSVDLESLCVAA 131
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
W + +D+ L+ DG L+DA+ ++ +AA + + P V+ D K+ + E++
Sbjct: 132 EHHVWCIRVDVNVLNHDGNLYDASTIATLAALMHFRRPDVTFADDKLRIYTEKE------ 185
Query: 203 KEPVNKEKRKLTLGGIPFSLTCILHKNYI--LADPTSEEESIMETLVTVVLDSSNQLVSL 260
++ L P S+T ++K+ + DPT EE+ ++++ + +S +L SL
Sbjct: 186 -----RDFIPLLFLHYPVSVTYCIYKSSWQPIVDPTLLEENAADSVIVLSFNSYQELCSL 240
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
GG + C R K L + +A+S
Sbjct: 241 -NAGGTAPTNVRTIMQCARNAATRCKSLVDFIRKALS 276
>gi|147770895|emb|CAN74168.1| hypothetical protein VITISV_005208 [Vitis vinifera]
Length = 305
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 130/283 (45%), Gaps = 34/283 (12%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
+ + +A+ +R D R R + G + A+GSA ++G T ++A++K E+ PS
Sbjct: 10 HFIQGGIAQDLRTDGRRRLTYRPFNVETGVIPQANGSARVRLGGTDVIASVKAELGKPSP 69
Query: 86 ESPDEG----CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLV 141
PD+G + + + G+ + + L++ + + I+L L +V
Sbjct: 70 SQPDKGKGRGGEELSTELSGALQHCLLGGKSGAVGDM--EVLTNVLGAG--IDLSSLVVV 125
Query: 142 GGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL-----DDGKIVMLPEEQ 196
GK W +Y+D + +DG L DA + AA +N IP V + DG LPE
Sbjct: 126 EGKVCWDLYIDGLVVSSDGNLLDALGAAIKAALTNTGIPKVEVAVGASGDG----LPEVD 181
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLTCI------LHKNYILADPTSEEESIMETLVTVV 250
++ E + G+P +T + ++YI+ D T EEES M + V+V
Sbjct: 182 ISDD--------EYLQFDTSGVPVIVTLTKVAQYHVGRHYIV-DATLEEESQMSSAVSVS 232
Query: 251 LDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQR-VKELHQIL 292
+ ++ L K GGA L S + D I++ + + +K+ H L
Sbjct: 233 VSGQGRICGLIKRGGAGLD-PSVILDMISVAKHKPLKKSHDYL 274
>gi|346977686|gb|EGY21138.1| exosome complex exonuclease RRP43 [Verticillium dahliae VdLs.17]
Length = 336
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 133/312 (42%), Gaps = 70/312 (22%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVM--------TPSLESP 88
R + R+ AR I+ + A GSAL +IG T++ I+ E++ S+
Sbjct: 38 RSNGRAPHEARTPNINTSTLTHAHGSALVRIGDNTVICGIRGEILPTANIPNYRASIRDS 97
Query: 89 DEGCVS----IDFHMPPI-----CSPLVRPG-RPAEAAPVVAKQLSDTISSSGMINLKEL 138
D+G + D +P I +P PG P A ++ ++ + SSG++N +L
Sbjct: 98 DDGGRAELRDYDLLVPNIELATGSAPQFLPGVPPTNLAQTLSTRVFSLLHSSGLVNADDL 157
Query: 139 SLVGGKAA----------------------------WMVYLDIYCLDADGALFDAALLSA 170
+ + A W++Y+DIY + DG FDAA +
Sbjct: 158 RIWHTRPAENTGYSAADDEDDDMGELEAGERVVIAYWVLYIDIYFISFDGNPFDAAWAAM 217
Query: 171 VAAFSNLQIPTVSLD-DGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKN 229
+AA N ++P D D +IV+ E++ LTL G P + + + +
Sbjct: 218 LAALRNTKLPAARWDQDREIVVCSR-------------AEQKPLTLSGFPIATSAAVFQG 264
Query: 230 ------YILADPTSEEESIMETLVTVVLDSSN---QLVSLYKPGGAVLAYTSAVQDCIAL 280
+ L DP EE++ +TVV+D + +L+S+ K GG L V + +A+
Sbjct: 265 KEPGRFWTLVDPDRLEETLCRENLTVVVDKNGGETRLLSVSKHGGTTLQ-PKLVGEFVAV 323
Query: 281 TRQRVKELHQIL 292
+R E +++
Sbjct: 324 AERRWDEFRRVM 335
>gi|326428882|gb|EGD74452.1| hypothetical protein PTSG_05816 [Salpingoeca sp. ATCC 50818]
Length = 280
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 122/267 (45%), Gaps = 17/267 (6%)
Query: 33 AESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGC 92
E +R D R S R +++G G A A IG+T + + ++ P + P +G
Sbjct: 25 GELVRLDGRGKSEMRRVLVTLGR--QQYGQATASIGNTQAICRVSCSIVRPHEDRPTKGF 82
Query: 93 VSIDFHMPPICSPLVRPG-RPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
V + P+ SP G RP+ A+ + + L + ++ + L +V G+ W V +
Sbjct: 83 VRYGVTLSPMASPDYDAGGRPSAASIYLTRLLEHIFREARALDDESLCIVAGEKVWAVSV 142
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
++ + DG + DA L+A+A + + P VS+ +V+ P + E EPV+
Sbjct: 143 NVTVTNDDGNMEDACALAALAGLMHFRRPYVSIAGQDVVVHPFD------EHEPVS---- 192
Query: 212 KLTLGGIPFSLTCILHKNYILA--DPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
L + P ++T L N LA DPT E + + ++V +++ ++ + G +
Sbjct: 193 -LAINHRPLNVTTALFDNGDLALVDPTKIELKVADGSISVAMNTHGEICGINSSEGLAVD 251
Query: 270 YTSAVQDCIALTRQRVKELHQILEEAI 296
++ +A T+ RV L L +A
Sbjct: 252 -PEQMEAIVAATKHRVTHLFTALNKAF 277
>gi|91079418|ref|XP_967497.1| PREDICTED: similar to exosome complex exonuclease rrp42 (ribosomal
RNA processing protein 42 [Tribolium castaneum]
gi|270003471|gb|EEZ99918.1| hypothetical protein TcasGA2_TC002710 [Tribolium castaneum]
Length = 285
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 126/280 (45%), Gaps = 24/280 (8%)
Query: 26 RYFERH-LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
+ F H + E+ R D R R + V+ A GSA ++ +T +L A+K+EV P
Sbjct: 8 KTFVLHGVEENFRVDGREREDYRPIELETNIVSHAFGSARLRLANTDVLVAVKIEVDVPY 67
Query: 85 LESPDEGCVSIDFHMPPICSPLVRP---GRPAEAAPV-VAKQLSDTISSSGMINLKELSL 140
E P EG ++F + CS P GR E + ++ LS S + +L +L +
Sbjct: 68 PERPKEG--KLEFFVD--CSANATPDFEGRGGEDLAIEISNSLSAAYKSPEVFDLTKLCI 123
Query: 141 VGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP---TVSLDDGKIVMLPEEQK 197
+ G W +++DI L+ G L+DA ++ AA + +IP +V++D + M ++
Sbjct: 124 LKGHKCWKIFVDILLLECGGNLYDAVSIAVKAALWDTRIPLVKSVTVDGNNVDMEVSDEL 183
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQL 257
+ +KL + P +T + DP EE + V+ S ++
Sbjct: 184 HDC----------QKLDVTAAPIMVTVCKIGEQCIVDPNVAEE-LCSVGAVVIAVSKDKF 232
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
++ + G L + + +C+ + + + L + L E +S
Sbjct: 233 STVLQIGSGSL-HPQTLLECLQMGEKVAQRLSEALTETLS 271
>gi|431905092|gb|ELK10147.1| Exosome complex exonuclease RRP42 [Pteropus alecto]
Length = 311
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 19/223 (8%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E +R D R R + V++ GSA K+G T +L +K E+ P L+ P+EG
Sbjct: 40 EDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGAPRLDKPNEG-- 97
Query: 94 SIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMV 149
++F + CS P GR + +A L ++ ++LK L + + W++
Sbjct: 98 YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKSLCISPREHCWIL 155
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKE 209
Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E +
Sbjct: 156 YVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGSKDIELSDDPYD 208
Query: 210 KRKLTLGGIPFSLT-CILHKNYILADPTSEEE--SIMETLVTV 249
+L++ +P +T C + +++ D T +EE S+ LV+V
Sbjct: 209 CIRLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSV 250
>gi|444315341|ref|XP_004178328.1| hypothetical protein TBLA_0A10310 [Tetrapisispora blattae CBS 6284]
gi|387511367|emb|CCH58809.1| hypothetical protein TBLA_0A10310 [Tetrapisispora blattae CBS 6284]
Length = 305
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 29/249 (11%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E+ R D R R I G + G + T + I + P + P EG
Sbjct: 19 LKENYRLDGRKFDEFRKVDIKFG---NEYGDVTVTMDKTKVHCRISCSLTQPYEDRPFEG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQ-LSDTISSSGMINLKELSLVGGKAAWMVY 150
I + PI G V+ + L +I SG ++++ L +V G W +
Sbjct: 76 LFVISTEISPIAGAQFENGNNTGDYEVLCSRILEKSIRRSGALDVEGLCIVAGSKCWTIR 135
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK 210
D++ LD DG DA+ ++ +AA + + P +S+ ++++LP + E+ PV
Sbjct: 136 ADVHFLDCDGGFIDASCIAVMAALLHFKKPDISVHGEQVIILPVD------ERPPV---- 185
Query: 211 RKLTLGGIPFSLTCIL--------------HKNYILADPTSEEESIMETLVTVVLDSSNQ 256
L + IP +T + + D T +EE + + +TV L+ + +
Sbjct: 186 -PLGILHIPICVTFSFFNPQDSEQNIKGDSNDEIAIIDATLKEELLRDGELTVTLNKNRE 244
Query: 257 LVSLYKPGG 265
+V + K GG
Sbjct: 245 IVQVNKAGG 253
>gi|323355606|gb|EGA87426.1| Rrp45p [Saccharomyces cerevisiae VL3]
Length = 212
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 80/168 (47%), Gaps = 4/168 (2%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L ++ R D RS + R+ I+ G G K+G+T + I ++ P + P EG
Sbjct: 19 LRQNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQPYEDRPFEG 75
Query: 92 CVSIDFHMPPICSPLVRPGR-PAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVY 150
I + P+ G E + ++ + ++ SG ++++ L +V G W V
Sbjct: 76 LFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVR 135
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKE 198
D++ LD DG DA+ ++ +A + + P +++ +I++ P ++E
Sbjct: 136 ADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHPVNERE 183
>gi|358255969|dbj|GAA57561.1| exosome complex component RRP42, partial [Clonorchis sinensis]
Length = 200
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R+ + R I ++ A GSA +IG T +L +KMEV P PDEG + I+
Sbjct: 23 RTDGRASNEYRPLEIETSILSHASGSASVRIGETHVLGCVKMEVGKPLSNRPDEGRIEIN 82
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS---SGMINLKELSLVGGKAAWMVYLDI 153
C P + A +A+ L T+ S S ++L+ L + G+ W+VY+D+
Sbjct: 83 VE----CYPTATYASTDKGANEIAENLKITLQSAYRSDALDLRRLCIQSGRQCWVVYIDL 138
Query: 154 YCLDADGALFDAALLSAVAAF 174
L+ G DAA L+ AA
Sbjct: 139 LLLEGGGNFLDAASLAIKAAL 159
>gi|342876957|gb|EGU78508.1| hypothetical protein FOXB_11029 [Fusarium oxysporum Fo5176]
Length = 333
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 141/310 (45%), Gaps = 72/310 (23%)
Query: 18 AFRRLFPLRYFERHL---AESIRPDARSLSRARNT----TISMGAVASADGSALAKIGST 70
F +L P Y L ++ IRP ARS RARN T+++ +++ A GSA+ ++G T
Sbjct: 11 TFAKLSPHPYLLASLDPASDDIRP-ARSNGRARNESRKPTVNLASLSHAHGSAVVRVGDT 69
Query: 71 TMLAAIKME-VMTPSL-----ESPDEGCVSIDFHMPPI-----CSPLVRPGRPAEA-APV 118
T++ ++ E ++TP++ + + D +P I C+P PG P A
Sbjct: 70 TVICGVRGETILTPNIPNYRASNTETELKEYDLLVPNIELATGCAPQFLPGGPPSTLAQT 129
Query: 119 VAKQLSDTISSSGMINLKELSLVGGK------------------------AAWMVYLDIY 154
++ ++ + SS +I +L + A W++Y+DI+
Sbjct: 130 LSTRIYSLLHSSRIIKPDDLRIWHTPPSEDLEDRMEEDEEDTSNENRSVVAYWVLYIDIF 189
Query: 155 CLDADGALFDAALLSAVAAFSNLQIPTVSLD-DGKIVMLPEEQKEENSEKEPVNKEKRKL 213
+ DG FDAA + +AA N ++P D D ++++ S K+P R L
Sbjct: 190 FISFDGNPFDAAWAATMAAVRNTKLPGARYDIDREMIIC--------SHKQP-----RPL 236
Query: 214 TLGGIPFSLTCILH-----------KNYILADPTSEEESIMETLVTVVLDSSN---QLVS 259
+ IP + T ++ + ++L DP EES+ + VTVV+D + +++S
Sbjct: 237 NITKIPIACTAVVFTGKETDRPTDGRFWLLVDPDRLEESLCDESVTVVVDCKDGDVKILS 296
Query: 260 LYKPGGAVLA 269
+ K GG L
Sbjct: 297 ISKHGGTALT 306
>gi|195567204|ref|XP_002107160.1| GD15722 [Drosophila simulans]
gi|194204561|gb|EDX18137.1| GD15722 [Drosophila simulans]
Length = 407
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 127/277 (45%), Gaps = 18/277 (6%)
Query: 24 PLRYF-ERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMT 82
P R F + + ++ R D R + +R+ ++ G + GS +G T ++A + E+
Sbjct: 15 PERSFVQLAVKQNQRLDGRRSNESRDVELTFG---TDWGSVAVSMGDTKVMAQVICEMGL 71
Query: 83 PSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVG 142
PSL P+EG + ++ + + + + + L T SS I+L+ L +
Sbjct: 72 PSLSRPNEGKLQLNVLLGGVAFLDEAYSTHDQRSLKLNSLLERTFRSSKCIDLESLCVAA 131
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
K W + +++ ++ DG L+DA+ ++ +AA + + P VS DG++ + K+ E
Sbjct: 132 EKHVWCIRVNVNVINHDGNLYDASSIATLAALMHFRRPDVSYKDGELRIF----KQNGLE 187
Query: 203 KEPVNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSL 260
P L P S+T ++K+ + DPT EE+ ++++ + +S +L SL
Sbjct: 188 FTP-------LLFHHYPVSVTYCVYKSSGQPILDPTLLEENAADSVIVLSFNSYQELCSL 240
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
GG V C R K L + +A++
Sbjct: 241 -TAGGTAPTNAPIVMQCARNAAARCKSLLDFVRKALA 276
>gi|308801701|ref|XP_003078164.1| Exosc8 protein (ISS) [Ostreococcus tauri]
gi|116056615|emb|CAL52904.1| Exosc8 protein (ISS) [Ostreococcus tauri]
Length = 294
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 101/181 (55%), Gaps = 4/181 (2%)
Query: 104 SPLVRPGRPAEAAPVVAKQLSDTISSSGMI--NLKELSLVGGKAAWMVYLDIYCLDADGA 161
S L RPGR ++ A A ++ D ++S+ ++ +L +L + G AW + LD+ LD DGA
Sbjct: 97 SELERPGRESDKAEACAARVRDALTSAEVLGSDLSDLCIERGVFAWRLMLDVVVLDDDGA 156
Query: 162 LFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFS 221
DAAL +AVAA ++ +P ++ GKIV+ EE+ + ++ ++ L + P
Sbjct: 157 AADAALSAAVAALRDVVLPEATVKRGKIVIGDEEEGVDGADDG--MRKGTPLNVRTTPVC 214
Query: 222 LTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALT 281
LT L+K ++L DPT EE++ E V+VVL + ++K GG V A + CIA
Sbjct: 215 LTTALYKEHLLVDPTHAEEALSECEVSVVLTEDGMIRGVFKNGGEVEATEDILMKCIAAA 274
Query: 282 R 282
R
Sbjct: 275 R 275
>gi|242776727|ref|XP_002478890.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Talaromyces stipitatus ATCC 10500]
gi|218722509|gb|EED21927.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Talaromyces stipitatus ATCC 10500]
Length = 252
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 108/229 (47%), Gaps = 14/229 (6%)
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
++++ I EV P + +G I + + SP R E V++ L I
Sbjct: 12 SSLVVRISAEVSRPRDDRQSDGTFLIAMELTAMGSPAWENLRQNELETYVSRVLDRVIRH 71
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189
S ++ + L ++ GK+ W + D++ D DG L D+A + +A + + P + + DG++
Sbjct: 72 SNALDTESLCILKGKSCWNIRADVHVTDYDGNLIDSACIGIMAGLQHFRRPDIEVKDGQV 131
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCI-LHKNYILA-DPTSEEESIMETLV 247
+ +E+ PV L + P S+T H+ +L D T +EE E +
Sbjct: 132 RVFGI------NERVPV-----PLNITHKPLSITFQSFHEGKVLILDATRKEEQASEGDL 180
Query: 248 TVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+ L+S+ + ++YK G+ ++ + L +Q+V E++ I+ +A+
Sbjct: 181 IIALNSTGETCAVYKAAGSPVSALEVINKT-NLAQQKVLEINGIISKAL 228
>gi|348680463|gb|EGZ20279.1| hypothetical protein PHYSODRAFT_491455 [Phytophthora sojae]
Length = 295
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 122/274 (44%), Gaps = 12/274 (4%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKI--GSTTMLAAIKMEVMTP 83
+Y +A +R D R R+ ++ +A ++GSA A + T +LA++K+EV P
Sbjct: 10 KYIAEGVAADVRADGRDRLSYRSLSLETSLLAQSNGSARASLEASGTDVLASVKLEVAPP 69
Query: 84 SLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQL-SDTISSSGMINLKELSLVG 142
E+P G V + P S + GR E V QL + + S L + ++
Sbjct: 70 LPEAPSAGIVQVAVSCCPSVSAKLY-GRAVEELNVELSQLMTRLLCSCPSAELGKYCIIP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
G++ W + +D+ ++ G L D ++ AA ++ P+V ++V + E K +
Sbjct: 129 GESVWAISIDVMVFESSGNLPDVISMAIYAALNDTVFPSV-----RLVGVEGEDKTIEVD 183
Query: 203 KEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
+P R +T P +T +Y + DP EEE ++V ++ + + K
Sbjct: 184 TDPAA--GRLMTAQHWPICVTLSKIGDYFITDPLQEEELCTTAQMSVAVNPEGSVCGVQK 241
Query: 263 PGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
G + +Q I R KEL ++L+E +
Sbjct: 242 SGTGAIEMEE-MQQMIDEACARSKELFKLLQETL 274
>gi|118486664|gb|ABK95169.1| unknown [Populus trichocarpa]
Length = 403
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 113/229 (49%), Gaps = 17/229 (7%)
Query: 73 LAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGM 132
+ + +++ P + +EG + I P+ P PGRP E+A + + + + S
Sbjct: 1 MGFVTGQLVQPYQDRRNEGMLLIFTEFSPMADPSFEPGRPGESAVELGRIVDRGLRESRA 60
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL--DDGK-I 189
++ + L ++ GK W + +D++ LD G L DAA ++A+AA + P +L DDG+ +
Sbjct: 61 VDTESLCVLSGKLVWAIRIDLHILDNGGNLVDAANIAALAALLTFRRPECTLGGDDGQEV 120
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL--HKNYILADPTSEEESIMETLV 247
+ P E E+EP+ L + +P ++T + ++ DPT EE++M +
Sbjct: 121 TVHPPE------EREPL-----PLIVHHLPIAITFAFLGSEGKMVVDPTHSEEAVMGGRM 169
Query: 248 TVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
TV +++ + S+ K GG + S + C+ L + + + + A+
Sbjct: 170 TVTVNAIGDICSIQKAGGEGVPQ-SVIMHCLQLASMSAESITKKINNAV 217
>gi|209876656|ref|XP_002139770.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209555376|gb|EEA05421.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 272
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/285 (20%), Positives = 123/285 (43%), Gaps = 14/285 (4%)
Query: 16 VDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAA 75
+D F + + E + + IR D R + R + +G + SA+GSA + +L
Sbjct: 1 MDNFISVSEQFFLENGIEQGIRNDGRDIFDFRIPLVELGVITSANGSARIRNDEVDILTT 60
Query: 76 IKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINL 135
IK EV +P+ ++P G + I+ P + + ++ + D ++ +L
Sbjct: 61 IKCEVSSPT-KNPTWGDIIINIDCP------INDKNDEDYTLDLSNTIKDLCFNN--FDL 111
Query: 136 KELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEE 195
+L ++ W +++DI + G + D + S A N +IP V+ V + +
Sbjct: 112 SKLCILSNYLCWNIFIDIMIISNGGNILDWLVFSIHCALRNSRIPQVTAK----VEIEDG 167
Query: 196 QKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSN 255
+++ N + P+ +E + GIP +T +N I+ D +EE+ + ++ + +D
Sbjct: 168 EEKSNLQVNPLIEEGIPFPIKGIPLVITAGYIRNKIVWDMNIQEEACAKAIIAISVDEYG 227
Query: 256 QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
+ K + ++ I+ L IL++ + +E
Sbjct: 228 HCCGIKKLNSVCFEF-PLIKTLISSANVTSNTLFNILDKFFNKIE 271
>gi|195029661|ref|XP_001987690.1| GH22060 [Drosophila grimshawi]
gi|193903690|gb|EDW02557.1| GH22060 [Drosophila grimshawi]
Length = 296
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 21/214 (9%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E R D RS R + G V++A GSA ++ +T +L +K E+ P+ +P+ G
Sbjct: 20 EDFRCDGRSRRDYRPMELETGLVSNASGSARLRLANTDILVGVKTEIDVPNPLTPEFG-- 77
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQL----SDTISSSGMINLKELSLVGGKAAWMV 149
++F + CS P +A++L + S + + L L+ G+ W +
Sbjct: 78 KLEFFVD--CSANATPEFEGRGGSDLAQELILSLQNAYESPFAFDYRTLCLIPGQQCWKL 135
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS---LDDGKIVMLPEEQKEENSEKEPV 206
Y+DI L+ G L DA L+A AA N ++P V+ +D G ++ + + +
Sbjct: 136 YIDILILECGGNLHDAVSLAAKAALFNTKLPRVTATLMDAGITDLIISDNPYDCT----- 190
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEE 240
++ + +P +T ++ L DP++EEE
Sbjct: 191 -----RIGIDAVPLLVTVCKIGDFCLVDPSAEEE 219
>gi|154301511|ref|XP_001551168.1| hypothetical protein BC1G_10425 [Botryotinia fuckeliana B05.10]
Length = 244
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 16/221 (7%)
Query: 72 MLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSG 131
+L I EV +P + +G +I + P+ SP RP E ++++ L T+ S
Sbjct: 6 VLVNITAEVTSPFPDRLFDGIFTITTELSPMASPAFETNRPTEQEVLLSRLLEKTLRRSA 65
Query: 132 MINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVM 191
++ + L L+ G+ W V D++ L DG L DA+ ++ +AA + + P S + + +
Sbjct: 66 ALDTESLCLIAGQKCWSVRADVHILSHDGNLIDASCIAIIAALQHFRKPDTSTEGETVTV 125
Query: 192 LPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILH----KNYILADPTSEEESIMETLV 247
+E+EPV L+L P +T + + L D EE + E
Sbjct: 126 YTL------AEREPV-----PLSLLHFPLCVTFSFYGKGQEQTRLVDTNLMEEQLREGSC 174
Query: 248 TVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKEL 288
T+ ++ ++ + K GG + +Q C + ++VK++
Sbjct: 175 TISMNRHGEVCQIAKLGGIAVDAVELLQ-CTNIALEKVKDI 214
>gi|156083393|ref|XP_001609180.1| 3' exoribonuclease family, domain 1 containing protein [Babesia
bovis T2Bo]
gi|154796431|gb|EDO05612.1| 3' exoribonuclease family, domain 1 containing protein [Babesia
bovis]
Length = 196
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVA 120
G+ + +G T + A+ E++ P++E P EG V+ + P+CS PG+ ++ ++
Sbjct: 55 GNVIVSLGDTIVFVAVSSEIVPPNVEHPTEGIVTFSVELSPMCSLNYEPGKASDVEQEIS 114
Query: 121 KQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP 180
+ SG+I+++ L +V K W + ++I+ L DG L DA ++ A + + P
Sbjct: 115 YAIEKIYKDSGIIDVESLCIVSRKHVWCLRVNIHILQNDGNLLDATNIAVFKALMSYRKP 174
Query: 181 TVSLD-DG 187
L+ DG
Sbjct: 175 DTQLNGDG 182
>gi|56758238|gb|AAW27259.1| SJCHGC04772 protein [Schistosoma japonicum]
Length = 277
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 22/230 (9%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D R S R I ++ A GSA +IG T ++ +KMEV PSL
Sbjct: 13 YLIQGIEVGCRMDGRGPSEYRPLEIETNILSHATGSASIRIGETFIVCCVKMEVGKPSLT 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS---SGMINLKELSLVGG 143
+EG + I+ C P + A +A++L T+ S S INL L + G
Sbjct: 73 RLNEGRIEINVE----CYPTATYRCNEKGASELAERLKTTLQSTYQSEFINLNSLCIQRG 128
Query: 144 KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEK 203
+ W++Y+D+ L+ G L DA+ L AA N L + + ++E
Sbjct: 129 RQCWVIYIDLLILEGAGNLLDASSLVIKAALLNATQSNSFLSS----VFRNDTNTSDTEI 184
Query: 204 EPVNKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTVVL 251
+ N++ +P +T +HK N + D T EEE+ + +++V+
Sbjct: 185 QNCNEDM-------LPLFVT--VHKIGNAYIIDATKEEEACSLSRLSLVI 225
>gi|449467882|ref|XP_004151651.1| PREDICTED: exosome complex exonuclease RRP42-like, partial [Cucumis
sativus]
Length = 195
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + +A+ +R D R R +I ++ A+GSA ++G T ++A +K E+ P+
Sbjct: 11 FIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAELGRPNPM 70
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI--------SSSGM-INLKE 137
PD+G VSI CSP P ++ +LS + S SG I+L
Sbjct: 71 QPDKGKVSISVD----CSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGIDLSS 126
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL 184
L +V GK W +Y++ + ++G L DA + AA SN IP V +
Sbjct: 127 LIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHV 173
>gi|301097627|ref|XP_002897908.1| exosome complex exonuclease RRP42-like protein [Phytophthora
infestans T30-4]
gi|262106656|gb|EEY64708.1| exosome complex exonuclease RRP42-like protein [Phytophthora
infestans T30-4]
Length = 295
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 124/273 (45%), Gaps = 12/273 (4%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKI--GSTTMLAAIKMEVMTPS 84
Y +A +R D R R+ ++ +A ++GSA A + T +LA++K+EV +P
Sbjct: 11 YIVEGVAADVRADGRDRLSYRSLSLETSLLAQSNGSARASLEASGTDVLASVKLEVASPL 70
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQL-SDTISSSGMINLKELSLVGG 143
E P+ G V +D P S + GR E V QL + + S L++ ++ G
Sbjct: 71 PEDPNAGIVQVDVSCCPSVSAKLY-GRAVEELNVELSQLMTRLLCSCPSAELEKYCIIPG 129
Query: 144 KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEK 203
++ W + +D+ ++ G L D ++ AA ++ P+V ++V + E K +
Sbjct: 130 ESVWSISIDVMVFESSGNLPDVISMAIYAALNDTIFPSV-----RLVGVEGEDKTIEVDT 184
Query: 204 EPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
+P + + P +T +Y + DP EEE ++V ++ + + K
Sbjct: 185 DPA--AGKLMMAQQWPICVTLSKIGDYFITDPLQEEELCTTAQMSVAVNPDGNVCGVQKS 242
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
G + +Q I R K+L ++L++A+
Sbjct: 243 GNGSIEMEE-MQQMIDEACARSKDLFKLLQKAL 274
>gi|225713980|gb|ACO12836.1| Exosome complex exonuclease RRP45 [Lepeophtheirus salmonis]
Length = 363
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 106/233 (45%), Gaps = 20/233 (8%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L+E R D R L R+ TI G G+ K+G T +LA+ V P P+EG
Sbjct: 15 LSEGKRLDGRKLDERRDLTIHFG---REWGTTEVKLGETRVLASTSCSVGEPQSSRPNEG 71
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ I PL + EA + + + + S ++++ L + + W++ L
Sbjct: 72 VLKIRM------EPLAKRSMTTEALVELNRVIERVLKQSKCLDMESLCISSEEKVWIISL 125
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
++ L+ G D A ++ +AA + + P V+L KI + P E++PV+
Sbjct: 126 EMTILNDAGNAADCASVAGLAALCHFKRPDVTLKGDKIRIHP------FYERDPVS---- 175
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
L + P T L+ L+DP+ +EE +M+ V + ++ ++ +L+ G
Sbjct: 176 -LAVHHHPVLSTFALYGRVALSDPSRDEEVVMDGKVVLGMNPYREICALHLAG 227
>gi|383861879|ref|XP_003706412.1| PREDICTED: exosome complex component RRP42-like [Megachile
rotundata]
Length = 291
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 112/237 (47%), Gaps = 23/237 (9%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSI 95
R D R R+ I + GS+ +IG+T +L IK+E+ +P + P+EG +
Sbjct: 22 FRNDGRQRCEYRSIEIETKLMPQTHGSSRLRIGNTDVLVGIKVELDSPHADKPNEG--KL 79
Query: 96 DFHMPPICSPLVRPGRPAEAAPVVAKQLSDTIS----SSGMINLKELSLVGGKAAWMVYL 151
+F + CS P + +A ++S+ ++ + +L+ L ++ K W +++
Sbjct: 80 EFFVD--CSATATPAFEGKGGDDLATEISNILTIAYQTRNAFDLRTLCILPSKKCWKIFV 137
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTV---SLDDGKIVMLPEEQKEENSEKEPVNK 208
D+ L G LFD + AA + +IP + +LD G+ P+ Q ++
Sbjct: 138 DVLILQCGGNLFDTVGAAVKAALYSTEIPKITAATLDGGE----PDIQLSDDL------Y 187
Query: 209 EKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+ +L P +T C + NYI+ DPTSEEE + + + + + ++ S+ K G
Sbjct: 188 DCIQLDTSNYPVIVTLCKIGDNYIV-DPTSEEEVCSASSIVMSVLPNGRISSVIKLG 243
>gi|310797863|gb|EFQ32756.1| exosome complex exonuclease RRP43 [Glomerella graminicola M1.001]
Length = 339
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 145/348 (41%), Gaps = 79/348 (22%)
Query: 11 SSEMEVDAFRRLFPLRYFERHL-----AESIRPDARSLSRARNTTISMGAVASADGSALA 65
S + D F +L P + +L A + R + R+ + AR I+ ++ A+GSA+
Sbjct: 4 SKGLPRDTFAKLSPHPFLLANLQPPAPANAARSNGRAPNEARIPNINTSSLTHANGSAVV 63
Query: 66 KIGSTTMLAAIKMEVM----TPSLESP---DEGCVS-----IDFHMPPI-----CSPLVR 108
+ G TT++ ++ E + P+ + DE S D +P I C+P
Sbjct: 64 RTGDTTVICGVRAETILASDIPNFRTAANTDEAKSSSELKDYDLLVPNIELATGCAPQFL 123
Query: 109 PGRPAEA-APVVAKQLSDTISSSGMINLKELSLVGGK----------------------- 144
PG P A ++ ++ + SS +++ ++L + +
Sbjct: 124 PGVPPTTLAQTMSTRVYSLLHSSRLVDPEDLRIWYTRPAEDAEAEDDDDKMDDGEEKTEG 183
Query: 145 -----AAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEE 199
A W++Y+DI+ + DG FD A + +AA + IP D P+ +
Sbjct: 184 ERVIMAYWVLYIDIFFVSFDGNPFDVAWAAILAALRDTTIPIARWD-------PDREMII 236
Query: 200 NSEKEPVNKEKRKLTLGGIPFSLTCILH------------KNYILADPTSEEESIMETLV 247
S +P + LTL G P + T + K + L DP EES+ E V
Sbjct: 237 CSRDDP-----KPLTLHGFPVACTAGVFTGKETADRPAGGKFWTLVDPDRLEESLCEEEV 291
Query: 248 TVVLDSS---NQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
T V+D S +++S+ K GG VL +++ + + QR ++ +
Sbjct: 292 TAVVDRSEGETKVLSISKHGGTVLQ-PPLIREFVGVAEQRWEQFRNAM 338
>gi|302837568|ref|XP_002950343.1| hypothetical protein VOLCADRAFT_90878 [Volvox carteri f.
nagariensis]
gi|300264348|gb|EFJ48544.1| hypothetical protein VOLCADRAFT_90878 [Volvox carteri f.
nagariensis]
Length = 311
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 118/270 (43%), Gaps = 47/270 (17%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ + + +R D RS R + +G +A A GSA ++G+T ++ +K+EV +PS
Sbjct: 9 FCQISIENDVRLDGRSCHDMRPVELELGVIAQAAGSARLRMGATDVIVGVKVEVGSPSSS 68
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEA-----APVVAKQLSDT--------------- 126
+P++G + + P SP+ + GR E A V+ L+ +
Sbjct: 69 APNQGRLQVTVEFSPCASPIYK-GRFGETYGEQIAAVIESSLAPSGRAGGGGGGGVAYDG 127
Query: 127 ---------------ISSSGM----INLKELSLVGGKAAWMVYLDIYCLDADGALFDAAL 167
SSSG ++L +L ++ GK AW++++D L+ DG + A
Sbjct: 128 TLPTAASPHLRGAPPSSSSGTPGPGLDLSKLCILPGKTAWVLFVDALVLNDDGNVLGAVS 187
Query: 168 LSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILH 227
+ +AA + +IP K+ + + EE E + +L + +P +T
Sbjct: 188 AATLAALQHTRIP-------KVEAVRDAAGEEEIELDDSPGAAWRLDVSALPLVVTTSRV 240
Query: 228 KNYILADPTSEEESIMETLVTVVLDSSNQL 257
+ + D T++EE + + V ++ QL
Sbjct: 241 GSQCVMDLTAQEERCSTSALHVAVNRKGQL 270
>gi|344234677|gb|EGV66545.1| ribosomal protein S5 domain 2-like protein [Candida tenuis ATCC
10573]
Length = 301
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 122/267 (45%), Gaps = 32/267 (11%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
+Y L + R D R L R + +G +G G T ++ E++ P
Sbjct: 12 KYIIESLKQGTRLDGRKLDEIRKPEVVLGD----NGYVELGWGQTKVVIKTSSEIVKPFE 67
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
+ P+EG + I+ + P+ S ++ + ++ + + +I S ++L+ L + G+
Sbjct: 68 DRPNEGLLVINNELSPMAS--IKFDERSVDEVMINRIIEKSIRKSNALDLEGLCIKTGEK 125
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD-DGKIVMLPEEQKEENSEKE 204
W++ +D+ ++ DG L D+ ++ + + ++P SLD +G I + + EK
Sbjct: 126 VWLIRVDLSIINFDGNLIDSCCFGSIISLIHFKLPNYSLDTNGNIKVYNLD------EKP 179
Query: 205 PVNKEKRKLTLGGIPFSLTCIL------------HKNYILA--DPTSEEESIMETLVTVV 250
P++ L++ IP +L+ + NY ++ D T +EE + ++ + V
Sbjct: 180 PIS-----LSVLHIPITLSISFFNPLNDEENLKSNNNYEISVFDATMKEELVRDSYLVVS 234
Query: 251 LDSSNQLVSLYKPGGAVLAYTSAVQDC 277
++S+ +L+ L K GG + V C
Sbjct: 235 VNSNKELIQLTKLGGIPIDSVELVNLC 261
>gi|194381296|dbj|BAG58602.1| unnamed protein product [Homo sapiens]
Length = 164
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 8/156 (5%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQ 178
+ W++Y+D+ L+ G LFDA ++ AA N +
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTR 164
>gi|237839967|ref|XP_002369281.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
gi|211966945|gb|EEB02141.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
Length = 366
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 123/325 (37%), Gaps = 79/325 (24%)
Query: 3 LPNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGS 62
LP S L+ M+ DAFR + P + R L + +R D R R IS + + GS
Sbjct: 4 LPADSSSLT--MDCDAFRTVLPAEFHRRFLVKQVRSDGRYFLTYRQPRISSNTLTNCCGS 61
Query: 63 ALAKIGSTTMLAAIKMEV----------------------MTPSLESPDE--------GC 92
A + G+ LA ++ EV + SL P + G
Sbjct: 62 ASVRAGNNYYLAGVRGEVGPQVAKVCASSIRQPTNSACSESSESLHQPQDETSNSSPAGR 121
Query: 93 VSIDFHMPPICSPLVRPGR--PAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA----- 145
+ + P IC G A +++ L+D ++S+ +I+ +L L +
Sbjct: 122 IIVSVEFPSICGAEFSDGAGPNTNAHLLISGVLTDLLNSNSVIDTSQLLLRATEGEENSE 181
Query: 146 ------------------------------AWMVYLDIYCLDADGALFDAALLSAVAAFS 175
AW +++ + CL+ DG D +LL+AVAA
Sbjct: 182 LDEDKLRGDEDGAHSTARSVRTEAKIERSFAWHLHVHVVCLEYDGNPVDFSLLAAVAALE 241
Query: 176 NLQIPTVSLDDGKIVMLPEEQKEEN-SEKEPVNKE------KRKLTLGGIPFSLTCILH- 227
N +P + D E N + +P + E +RKL L P S+T H
Sbjct: 242 NTVLPALCWDMKAKWWRQWRPTESNLAMHDPTHLENLSLLKERKLVLANRPLSVT-FSHV 300
Query: 228 -KNYILADPTSEEESIMETLVTVVL 251
+ + DP+ EEES+ L + L
Sbjct: 301 MSQWWVVDPSREEESLGCGLSVIFL 325
>gi|397475927|ref|XP_003809367.1| PREDICTED: exosome complex component RRP42-like [Pan paniscus]
Length = 164
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 8/156 (5%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQ 178
+ W++Y+D+ L+ G LFDA ++ AA N +
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTR 164
>gi|221484661|gb|EEE22955.1| exosome complex exonuclease rrp43, putative [Toxoplasma gondii GT1]
gi|221504847|gb|EEE30512.1| exosome complex exonuclease, putative [Toxoplasma gondii VEG]
Length = 366
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 123/325 (37%), Gaps = 79/325 (24%)
Query: 3 LPNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGS 62
LP S L+ M+ DAFR + P + R L + +R D R R IS + + GS
Sbjct: 4 LPADSSSLT--MDCDAFRTVLPAEFHRRFLVKQVRSDGRYFLTYRQPRISSNTLTNCCGS 61
Query: 63 ALAKIGSTTMLAAIKMEV----------------------MTPSLESPDE--------GC 92
A + G+ LA ++ EV + SL P + G
Sbjct: 62 ASVRAGNNYYLAGVRGEVGPQVAKVCASSIRQPTNSACSESSESLHQPQDETSNSSPAGR 121
Query: 93 VSIDFHMPPICSPLVRPGR--PAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA----- 145
+ + P IC G A +++ L+D ++S+ +I+ +L L +
Sbjct: 122 IIVSVEFPSICGADFSDGAGPNTNAHLLISGVLTDLLNSNSVIDTSQLLLRATEGEENSE 181
Query: 146 ------------------------------AWMVYLDIYCLDADGALFDAALLSAVAAFS 175
AW +++ + CL+ DG D +LL+AVAA
Sbjct: 182 LDEDELRGDEDGAHSTARSVLTEAKIERTFAWHLHVHVVCLEYDGNPVDFSLLAAVAALE 241
Query: 176 NLQIPTVSLDDGKIVMLPEEQKEEN-SEKEPVNKE------KRKLTLGGIPFSLTCILH- 227
N +P + D E N + +P + E +RKL L P S+T H
Sbjct: 242 NTVLPALCWDMKAKWWRQWRPTESNLAMHDPTHLENLSLLKERKLVLANRPLSVT-FSHV 300
Query: 228 -KNYILADPTSEEESIMETLVTVVL 251
+ + DP+ EEES+ L + L
Sbjct: 301 MSQWWVVDPSREEESLGCGLSVIFL 325
>gi|157823529|ref|NP_001099902.1| exosome complex exonuclease RRP43 [Rattus norvegicus]
gi|149064772|gb|EDM14923.1| exosome component 8 (predicted), isoform CRA_c [Rattus norvegicus]
Length = 140
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 14/145 (9%)
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG + DA + +AA N+Q+P V+++ EE + E K+K L +
Sbjct: 7 DYDGNILDACTFALLAALKNVQLPEVTIN------------EETALAEVNLKKKSYLNVR 54
Query: 217 GIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQ 275
P + + + ++ DPT EEE + +TVV+D +L L+KPGG+ L + +Q
Sbjct: 55 ANPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVMDEEGKLCCLHKPGGSGLT-GAKLQ 113
Query: 276 DCIALTRQRVKELHQILEEAISGME 300
DC++ R KE+ ++L+E I M+
Sbjct: 114 DCMSRAVTRHKEVSKLLDEVIQSMK 138
>gi|402586249|gb|EJW80187.1| hypothetical protein WUBG_08906 [Wuchereria bancrofti]
Length = 276
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 111/256 (43%), Gaps = 24/256 (9%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTML 73
M D + P Y+ + L+ESI PD RS++ R + MG + GS+ A+ G T+
Sbjct: 1 MTADLLKLCDPTAYYNQFLSESIYPDGRSINSFRPILLRMGVNERSAGSSFARQGGATVT 60
Query: 74 AAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMI 133
I+ +L +P I +P I + P E A V+ QL ++ +
Sbjct: 61 CNIE------ALLAPVSDASII---VPVIQAAPNIPKNLVEDAMVMVNQL---VAQNAFC 108
Query: 134 NLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLP 193
L GG+ W++ L I L+ DGA+ DA A +L++P D
Sbjct: 109 TKDALKTAGGRLTWLLNLHIMILNVDGAICDALCTCIAGALVDLRLPDAFTD-------Y 161
Query: 194 EEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKN-----YILADPTSEEESIMETLVT 248
EE + K +++ + + IP S T I++K IL DP SE + V
Sbjct: 162 EEDIPIDINKVKLSETFHHIKVADIPVSSTFIVYKPPNEEVKILCDPVSELFQVAPNTVM 221
Query: 249 VVLDSSNQLVSLYKPG 264
+V+ ++ ++ + + G
Sbjct: 222 IVVGNNARIHRISQSG 237
>gi|320169517|gb|EFW46416.1| exosome component 7 [Capsaspora owczarzaki ATCC 30864]
Length = 294
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 105/235 (44%), Gaps = 19/235 (8%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+A ++R D R + R T+ G V++ GSA ++G T +L +K E+ P P +G
Sbjct: 17 VAANLRSDGRLRTDYRPFTVESGIVSNTSGSARVRLGLTDVLVGVKAEIGEPDQAKPTQG 76
Query: 92 C--VSIDFHMPPICSPLVRPGRP-AEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWM 148
V++DF + E A +A+ L ++L L +V G+ W+
Sbjct: 77 RFEVTVDFSSTSASAAAFDDDNTETELASAIARTLKG-------VDLSALCIVPGEQCWV 129
Query: 149 VYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL-DDGKIVMLPEEQKEENSEKEPVN 207
+Y+D L A G +D L+ AA +N +IP V + DDG + E + + E
Sbjct: 130 IYIDALILVAAGNAYDVLSLAVRAALANTRIPKVEVSDDGHGRVELEVSDDPHHVTE--- 186
Query: 208 KEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
L + +P +T + + D T EEES ++ V V +DS + K
Sbjct: 187 -----LDIRAVPVIVTLSKIGAFHIVDATIEEESCAKSRVHVAVDSKGAFCMVTK 236
>gi|46128401|ref|XP_388754.1| hypothetical protein FG08578.1 [Gibberella zeae PH-1]
Length = 336
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 136/311 (43%), Gaps = 75/311 (24%)
Query: 19 FRRLFPLRYFERHLAES---IRPDARSLSRA----RNTTISMGAVASADGSALAKIGSTT 71
F +L P Y +L S +RP ARS RA R T++ +++ A+GSA+ ++G TT
Sbjct: 12 FAKLSPHPYLLANLKPSSNDVRP-ARSNGRASDEVRTPTVNASSLSHANGSAVVRVGDTT 70
Query: 72 MLAAIKMEVM----TPSLESPDEGC--VSIDFHMPPI-----CSPLVRPGRPAEA-APVV 119
++ ++ E + PS + + D +P I C+P PG P A +
Sbjct: 71 VICGVRAETILTQNIPSYRAANTETELKEYDLLVPNIELATGCAPQFLPGGPPSTLAQTL 130
Query: 120 AKQLSDTISSSGMINLKELSLVGGK---------------------------AAWMVYLD 152
+ ++ + SS +IN ++L + A W++Y+D
Sbjct: 131 STRIYSLLHSSKIINPEDLRIWHTAPSEDFEAAEDRMEEDDAETVNENRSVVAYWVLYID 190
Query: 153 IYCLDADGALFDAALLSAVAAFSNLQIPTVSLD-DGKIVMLPEEQKEENSEKEPVNKEKR 211
I+ + DG FDAA + +AA + ++P D D ++++ KE R
Sbjct: 191 IFFISFDGNPFDAAWAATMAALRDTKLPGARFDLDREMIVCSR-------------KESR 237
Query: 212 KLTLGGIPFSLTCILHKN-----------YILADPTSEEESIMETLVTVVLDSSN---QL 257
L++ IP + T ++ ++L DP EES+ + VT+V+D N +
Sbjct: 238 PLSITSIPIACTAVVFTGKETDRPTDGEFWMLVDPDRLEESLCDESVTIVVDCKNGKVNI 297
Query: 258 VSLYKPGGAVL 268
+S+ K GG L
Sbjct: 298 LSISKHGGIAL 308
>gi|209881309|ref|XP_002142093.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209557699|gb|EEA07744.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 287
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 22/242 (9%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTML 73
M D L P Y +R + + IRPD R+ +R+ I + + D S K G+++ +
Sbjct: 1 MNKDLLWSLCPNEYLKRFIEQGIRPDGRTSEISRSICIQKNTIPNYDCSVSIKAGNSSYM 60
Query: 74 AAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMI 133
A ++ +S + + ++ P +C V + A + + L+DT ++
Sbjct: 61 AGSTNKIAANESDSDIQRRIIVNIDFPKVCGLTVSTNQSIYIANTIMECLNDT----RIL 116
Query: 134 NLKEL--SLVGGK-AAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPT--------- 181
N K+L S V K W++Y+DI CL DG D L+AVA+ + IP
Sbjct: 117 N-KDLLYSKVNDKDIFWVIYIDIVCLSYDGNALDYCFLAAVASLIDTNIPKNIEWDKEYS 175
Query: 182 -VSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCI-LHKNYILADPTSEE 239
+ I + P E E++ V + L IP ++ + L Y + DP+ E
Sbjct: 176 WYRISSDNISLEPGENIYEDTN---VQENSSSRILKYIPIFVSFLYLSGGYWVCDPSYIE 232
Query: 240 ES 241
+S
Sbjct: 233 DS 234
>gi|358381188|gb|EHK18864.1| hypothetical protein TRIVIDRAFT_210101 [Trichoderma virens Gv29-8]
Length = 338
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 141/310 (45%), Gaps = 72/310 (23%)
Query: 19 FRRLFPLRYFERHLAESIR--PDARSLSRA----RNTTISMGAVASADGSALAKIGSTTM 72
F +L P Y +L S P ARS RA R T+++ +++ A GSAL + G TT+
Sbjct: 12 FAKLSPHPYLLANLEPSDDSIPPARSNGRAPFEVRKPTVNLSSLSHAHGSALVRTGDTTV 71
Query: 73 LAAIKMEVM----TPSLESPDEGCVSIDFHM--PPI-----CSPLVRPGRPAEA-APVVA 120
+ I+ E + P+ + + D+ + P I +P PG P A ++
Sbjct: 72 ICGIRGETILTDHIPNFRASNTQTELADYDLLVPNIELATGSAPQFLPGGPPTTLAQTLS 131
Query: 121 KQLSDTISSSGMINLKELSL------------------VGGK---------AAWMVYLDI 153
++ + SS ++ ++L + VG + A W++Y+D+
Sbjct: 132 TKIYSLLHSSKLLRAEDLRIWHKRPAEAPISGYEDEEEVGNEKQEGEEYVVAYWVLYIDL 191
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKL 213
+ + DG FDAA + VAA + ++P D P+ + S+K+P R L
Sbjct: 192 FFISFDGNPFDAAWAATVAALRDTKLPQARYD-------PDREMIICSKKDP-----RPL 239
Query: 214 TLGGIPFSLTCILH------------KNYILADPTSEEESIMETLVTVVLD---SSNQLV 258
T+ +P + T ++ K +ILADP + EES+ + VT+V+D S +++
Sbjct: 240 TVESMPIACTAVIFTGKETKEQAADGKFWILADPDTLEESLCDETVTIVIDCAGGSRRIL 299
Query: 259 SLYKPGGAVL 268
S+ K GG V+
Sbjct: 300 SISKHGGTVM 309
>gi|195480861|ref|XP_002101422.1| GE15642 [Drosophila yakuba]
gi|194188946|gb|EDX02530.1| GE15642 [Drosophila yakuba]
Length = 415
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 124/276 (44%), Gaps = 18/276 (6%)
Query: 24 PLRYF-ERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMT 82
P R F + + ++ R D R + R+ ++ GA G+ +G T +L + ++
Sbjct: 15 PERSFVQLAVKQNQRFDGRRSNECRDVELTFGADW---GTVAVSMGDTKVLTHVTCDMGA 71
Query: 83 PSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+ P+EG + ++ ++ + + + + L T SS ++L+ L +
Sbjct: 72 PATSRPNEGKLQLNVNLGGVAFLDEVQTTHDQRSLTLNSLLERTFRSSRSVDLESLCVAA 131
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W + +D+ L+ DG L+DA+ ++ +AA + + P V+ D ++ + E++
Sbjct: 132 EQHVWCIRVDVNVLNHDGNLYDASTIATLAALMHFRRPDVTFTDDELRIYTEKE------ 185
Query: 203 KEPVNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVLDSSNQLVSL 260
+E L P S+T ++K+ + DPT EE+ ++++ + +S +L SL
Sbjct: 186 -----REFIPLLFLHYPVSVTYCIYKSSGQPIVDPTLLEENAADSVIVLSFNSYQELCSL 240
Query: 261 YKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG + C R K L + +A+
Sbjct: 241 -NAGGTAPTNVRTIMQCARNAATRCKSLVDFVRKAL 275
>gi|67624141|ref|XP_668353.1| exosome complex exonuclease RRP43 (Ribosomal RNA processing protein
43) [Cryptosporidium hominis TU502]
gi|54659558|gb|EAL38129.1| exosome complex exonuclease RRP43 (Ribosomal RNA processing protein
43) [Cryptosporidium hominis]
Length = 291
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 118/269 (43%), Gaps = 23/269 (8%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALA-KIGSTTM 72
M + L P Y R L + +R D R RN + + ++S++ A++ +IG ++
Sbjct: 1 MNKSSLWYLRPDEYLNRFLEQGVRCDGRKPEVCRNFKLELNELSSSNYGAISVRIGKSSY 60
Query: 73 LAAIKMEVMTPSLESPDEGCVS-----IDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI 127
+A +++ L+ ++ + +P IC P + V+ +++ +
Sbjct: 61 IACCNPQIIHTGLDQESNNAITNTRINVSLELPTICGFTGNPNH----SNFVSNSITECL 116
Query: 128 SSSGMINLKEL--SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPT--VS 183
+ S +IN + G + W++ + + CL DG D L++++A+ N +P V
Sbjct: 117 NDSRIINKEAFITKFQGKELHWLIDIKVVCLSYDGNPLDYTLIASIASLRNTILPKNLVW 176
Query: 184 LDDGKIVMLPEE--QKEENSEKEPVNKEKRKLTLGGIP-FSLTCILHKNYILADPTSEEE 240
DD + + K+E ++E + ++ L +P F L+ + + DP E+
Sbjct: 177 DDDYNWFRISSDPVSKDE-VKREQMMQDSSSFFLKKVPIFVSFSYLNDSIWVCDPNYMED 235
Query: 241 SIMETLVTVVLDS-----SNQLVSLYKPG 264
SI ++ +DS Q +S Y PG
Sbjct: 236 SIGSSVTICCVDSQINTLQTQCISKYTPG 264
>gi|358396377|gb|EHK45758.1| hypothetical protein TRIATDRAFT_299373 [Trichoderma atroviride IMI
206040]
Length = 337
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 140/309 (45%), Gaps = 71/309 (22%)
Query: 19 FRRLFPLRYFERHL--AESIRPDARSLSRA----RNTTISMGAVASADGSALAKIGSTTM 72
F +L P Y +L ++ P ARS RA R T+++ +++ A GSAL + G TT+
Sbjct: 12 FAKLSPHPYLLANLEPSDESTPPARSNGRAPFEVRKPTVNLSSLSHAHGSALVRTGDTTV 71
Query: 73 LAAIKMEVM----TPSLESPDEGCVSIDFHM--PPI-----CSPLVRPGRPAEA-APVVA 120
+ I+ E + P+ + + D+ + P I +P PG P A ++
Sbjct: 72 ICGIRAETILTENIPNYRASNTQTELSDYDLLVPNIELATGSAPQFLPGGPPTTLAQTLS 131
Query: 121 KQLSDTISSSGMINLKELSLVGGKAA--------------------------WMVYLDIY 154
++ + SS ++ ++L + + A W++Y+D++
Sbjct: 132 TKIYSLLHSSKLLRAEDLRIWHNRPAEVSFADEEEGAEESDQKEGEKYVVAYWVLYIDLF 191
Query: 155 CLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLT 214
+ DG FDAA + VAA + ++P D + ++L S K+P + LT
Sbjct: 192 FISFDGNPFDAAWAATVAALRDTKLPQARYDPDREMIL-------CSRKDP-----KPLT 239
Query: 215 LGGIPFSLTCILH------------KNYILADPTSEEESIMETLVTVVLD---SSNQLVS 259
+ +P S T ++ K ++LADP + EES+ + VT+V+D S +++S
Sbjct: 240 VESMPISCTAVIFTGKETKDQPADGKFWLLADPDTLEESLCDETVTIVIDCTGGSRRILS 299
Query: 260 LYKPGGAVL 268
+ K GG V+
Sbjct: 300 ISKHGGTVM 308
>gi|354486487|ref|XP_003505412.1| PREDICTED: exosome complex component RRP42-like [Cricetulus
griseus]
Length = 274
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 112/242 (46%), Gaps = 17/242 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+ E +R D R R + V++ GSA K+G T +L +K E+ TP LE P EG
Sbjct: 1 MKEDLRVDGRGCEDYRCIEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPSEG 60
Query: 92 CVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVGGKAAW 147
++F + CS P GR + +A L ++ ++L L + + W
Sbjct: 61 --YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLSSLCISPREHCW 116
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVN 207
++ +D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 117 VLCVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGAKDIELSDDP 169
Query: 208 KEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
+ +L++ +P +T C + +++ D T +EE+ + V + S + + K G
Sbjct: 170 YDCIRLSVENVPCIVTLCKIGCRHVV-DATLQEEACSLASLLVSVTSKGVVTCMRKVGKG 228
Query: 267 VL 268
L
Sbjct: 229 SL 230
>gi|339239765|ref|XP_003375808.1| exosome complex exonuclease RRP45 [Trichinella spiralis]
gi|316975514|gb|EFV58947.1| exosome complex exonuclease RRP45 [Trichinella spiralis]
Length = 448
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
Query: 28 FERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLES 87
E + + R D R R + G A GS +A+ G+T + V+TPSL
Sbjct: 30 LEEGFSTNSREDLRENEEFRPVRLCFG---RAFGSCVAEFGNTKVFVKTSCSVVTPSLTR 86
Query: 88 PDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAW 147
P G + I+ P GR E + L I + + L L ++ G+ W
Sbjct: 87 PSSGILKINLEFGPQAVAHYEVGR-LEKCIEYQRLLERNIKDARCVCLDTLCIISGEKVW 145
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS 183
+ D+Y L+ DG+L D A ++ ++A + +IP+V+
Sbjct: 146 QIRCDVYVLNNDGSLVDCACVAILSALRHFRIPSVT 181
>gi|67476142|ref|XP_653674.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56470674|gb|EAL48311.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|407034971|gb|EKE37468.1| 3' exoribonuclease family protein [Entamoeba nuttalli P19]
gi|449710101|gb|EMD49236.1| 3' exoribonuclease family protein [Entamoeba histolytica KU27]
Length = 265
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 129/275 (46%), Gaps = 23/275 (8%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
+ + + + +IR D R+ + R G + A+GS +G T ++ +K E+ PS
Sbjct: 9 INFIKEGIKTNIRTDGRANIQFREIKCEKGVIDQANGSVRLCLGKTEVVVGVKCELGEPS 68
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPV-VAKQLSDTISSSGMINLKELSLVGG 143
+ +P+ G ++ LV+ + V + K + ++ ++G L+EL ++ G
Sbjct: 69 VLTPESGRYNV----------LVKQVGTMTSRDVEIEKMILVSLENAGKDMLQELCVLKG 118
Query: 144 KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEK 203
K W++Y+D+ ++ DG + D L+ AA N IP V++ G + + + +K
Sbjct: 119 KLCWIIYVDVVVVEDDGNVMDCTGLAVRAALLNTLIPIVNVISG-----DSDTVQVDIDK 173
Query: 204 EPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
+ N + +K +P ++ I + +ADP+ EE + +T + S+ ++ + K
Sbjct: 174 D--NVQFKKFKPESVPLCVSLIQFEKEFIADPSKVEEKCNGSEITTAITSNGKVCGIQKG 231
Query: 264 GGAVLAYTSAVQDCIALTR----QRVKELHQILEE 294
G T + D I + + KEL ++LEE
Sbjct: 232 GNGCFK-TEEMYDMIIQAQMIGLKLFKELDELLEE 265
>gi|340522286|gb|EGR52519.1| predicted protein [Trichoderma reesei QM6a]
Length = 336
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 152/343 (44%), Gaps = 78/343 (22%)
Query: 19 FRRLFPLRYFERHL------AESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTM 72
F +L P Y +L A R + R+ R T+++ +++ A GSAL + G TT+
Sbjct: 12 FAKLSPHPYLLANLEPSSDSAAPTRSNGRAPFEVRKPTVNLSSLSHAHGSALVRTGDTTV 71
Query: 73 LAAIKME-VMTPSLESPDEGCVSI-------DFHMPPI-----CSPLVRPGRPAEA-APV 118
+ I+ E ++T + P+ +I D +P I +P PG P A
Sbjct: 72 ICGIRGETILTEHI--PNYRASNIQTELSDYDLLVPNIELATGSAPQFLPGGPPTTLAQT 129
Query: 119 VAKQLSDTISSSGMINLKELSLVGGKAA------------------------WMVYLDIY 154
++ ++ + SS ++ ++L + +AA W++Y+DI+
Sbjct: 130 LSTRIYSLLHSSKLLRAEDLRIWHKRAADVPVPADEEEVMEESDGEKYVAAYWVLYIDIF 189
Query: 155 CLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLT 214
+ DG FDAA + VAA + ++P D + ++L S K+P R LT
Sbjct: 190 FISFDGNPFDAAWAATVAALRDTKLPQARYDPDREMIL-------CSRKDP-----RPLT 237
Query: 215 LGGIPFSLTCILH------------KNYILADPTSEEESIMETLVTVVLD---SSNQLVS 259
+ IP + T ++ K ++LADP + EES+ VT+V+D S +++S
Sbjct: 238 VASIPIACTAVIFTGKETKDQAPDGKFWLLADPDTLEESLCNETVTIVVDCAGGSRRILS 297
Query: 260 LYKPGG-AVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEI 301
+ K GG A+ A +D + +R ++ AI+G +
Sbjct: 298 ISKHGGTAMTAKLLGSKDFLDWASKRWED----FASAITGTRL 336
>gi|66362500|ref|XP_628216.1| RPR45-like archaeo-eukaryotic exosomal RNAse PH [Cryptosporidium
parvum Iowa II]
gi|46229700|gb|EAK90518.1| RPR45-like archaeo-eukaryotic exosomal RNAse PH [Cryptosporidium
parvum Iowa II]
gi|323509167|dbj|BAJ77476.1| cgd7_230 [Cryptosporidium parvum]
Length = 291
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 118/269 (43%), Gaps = 23/269 (8%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASAD-GSALAKIGSTTM 72
M + L P Y R L + +R D R RN + + ++S++ G+ +IG+++
Sbjct: 1 MNKSSLWYLRPDEYLNRFLEQGVRCDGRKPEVCRNFKLELNELSSSNYGAVSVRIGNSSY 60
Query: 73 LAAIKMEVMTPSLESPDEGCVS-----IDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI 127
+A +++ L+ ++ + +P IC P + V+ +++ +
Sbjct: 61 IACCSPQIIHTGLDQESNNAITNTRINVSLELPTICGFTGNPNH----SNFVSNSITECL 116
Query: 128 SSSGMINLKEL--SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPT--VS 183
+ S +IN + G + W++ + + CL DG D L++++A+ N +P V
Sbjct: 117 NDSRIINKEAFITKFQGKELHWLIDIKVVCLSYDGNPLDYTLIASIASLRNTILPKNLVW 176
Query: 184 LDDGKIVMLPEE--QKEENSEKEPVNKEKRKLTLGGIP-FSLTCILHKNYILADPTSEEE 240
DD + + K+E ++E + ++ L +P F L+ + + DP E+
Sbjct: 177 DDDYNWFRISSDPISKDE-VKREQMMQDSSSFFLKKVPIFVSFSYLNDSIWVCDPNYMED 235
Query: 241 SIMETLVTVVLDS-----SNQLVSLYKPG 264
SI ++ +D+ Q +S Y PG
Sbjct: 236 SIGSSVTICCVDNQINTLQTQCISKYTPG 264
>gi|167392099|ref|XP_001740016.1| exosome complex exonuclease RRP42 [Entamoeba dispar SAW760]
gi|165896056|gb|EDR23596.1| exosome complex exonuclease RRP42, putative [Entamoeba dispar
SAW760]
Length = 265
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 129/275 (46%), Gaps = 23/275 (8%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
+ + + + +IR D R+ + R G + A+GS +G T ++ +K E+ PS
Sbjct: 9 INFIKEGIKTNIRTDGRANIQFREIKCEKGVIDQANGSVRLCLGKTEVVVGVKCELGEPS 68
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPV-VAKQLSDTISSSGMINLKELSLVGG 143
+ +P+ G ++ LV+ + V + K + ++ ++G L+EL ++ G
Sbjct: 69 ILTPESGRYNV----------LVKQVGTMTSRDVEIEKMILVSLENAGKDMLQELCVLKG 118
Query: 144 KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEK 203
K W++Y+D+ ++ DG + D L+ AA N IP V++ G + + + +K
Sbjct: 119 KLCWIIYVDVVVVEDDGNVMDCTGLAVRAALLNTLIPIVNVISG-----DSDTVQVDIDK 173
Query: 204 EPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
+ N + +K +P ++ + + +ADP+ EE + +T + S+ ++ + K
Sbjct: 174 D--NVQFKKFKPESVPLCVSLVQFEKEFIADPSKVEEKCNGSEITTAITSNGKVCGIQKG 231
Query: 264 GGAVLAYTSAVQDCIALTR----QRVKELHQILEE 294
G T + D I + + KEL ++LEE
Sbjct: 232 GNGCFK-TEEMYDMIIQAQMIGLKLFKELDELLEE 265
>gi|443919691|gb|ELU39792.1| exosome complex exonuclease rrp45 [Rhizoctonia solani AG-1 IA]
Length = 372
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 125/268 (46%), Gaps = 18/268 (6%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSI 95
IR D RS +AR+ ++ G + G ++G T+ LA + + P + P EG V+I
Sbjct: 104 IRVDGRSPMQARDPELTFG---DSLGWVECRMGKTSALANVSATMTRPRPDRPYEGTVTI 160
Query: 96 DFHMPPICSPLVRPGRPAEAAPVVAKQL------SDTISSSGMINLKELSLVGGKAAWMV 149
+ P+ + + GR E + ++L S S ++ L L G+ W +
Sbjct: 161 HTELSPMAAAIYDAGRLFEGVRPLTEKLCVFSPDSRYAIDSPLLTLNPFGL--GQKVWAL 218
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKE 209
L I+ L +G + D A L+AV A + + P V + +++++ + E+ P+
Sbjct: 219 RLTIHVLSDEGNMLDCACLAAVTALRHFRRPDVEVVGDEVIIVGIRFSHDPEERAPL--- 275
Query: 210 KRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
L+L P+ ++ L ++ + DP E I + +++ L + +L ++ K GG L
Sbjct: 276 --PLSLHHTPYCVSFTFLDEDLPVLDPNHLETQISLSSLSLALTPARELCTVQKAGGLAL 333
Query: 269 AYTSAVQDCIALTRQRVKELHQILEEAI 296
++ + + R KEL+ ++E+ +
Sbjct: 334 DADEMLR-LVDIAAGRAKELNSLVEKRL 360
>gi|360044264|emb|CCD81811.1| putative exosome complex exonuclease rrp45
(polymyositis/scleroderma autoantigen 1) (ribosomal rna
processing protein 45) [Schistosoma mansoni]
Length = 471
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 127/275 (46%), Gaps = 14/275 (5%)
Query: 32 LAESIRPDARSLSRARNTTISM--GAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPD 89
L R D RS++ R + G + G + KIG+TT++A + +EV+ P P
Sbjct: 14 LISGYRLDGRSINEYREISFRFPQGKDPNVSGCCVVKIGATTVMAQVSVEVIEPKHFRPS 73
Query: 90 EGCVSIDFH--MPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAW 147
+G + + F + + L R + + ++ L + S I+L L +V + +
Sbjct: 74 QGMLFVHFDASILKLSKTLYRKQKRDDEGRRLSAVLQTLLRDS--IDLDALCIVAWERVF 131
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVN 207
V +++ L DG L D L+AVAA + + P V +DD V++ E K +
Sbjct: 132 AVRVELRALSYDGNLGDCGTLAAVAALAAFRRPDVYVDDMGKVLVDFEAKFRPRVPLGIR 191
Query: 208 KEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIME-TLVTVVLDSSNQLVSLYKPGGA 266
+ +TLG LT +L DPT+ EE I+ V + L +++++ LY G +
Sbjct: 192 RTPVLVTLG-----LTA--DAKVVLVDPTAREELILTGGRVLLGLTNTSEICCLYTTGLS 244
Query: 267 VLAYTSAVQDCIALTRQRVKELHQILEEAISGMEI 301
V S++ CI L + K L ++ A+ G+ I
Sbjct: 245 VPIQCSSLSRCIHLANSKAKSLVSLINWALEGLSI 279
>gi|387192361|gb|AFJ68652.1| exosome complex component RRP45 [Nannochloropsis gaditana CCMP526]
gi|422294192|gb|EKU21492.1| exosome complex component RRP45 [Nannochloropsis gaditana CCMP526]
Length = 620
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 124/286 (43%), Gaps = 27/286 (9%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKI--GSTTMLAAIKMEVMTPSLESPDEG 91
E+ R D R+ + R ++ A A+G A A+I G T +L + E+ P + P EG
Sbjct: 25 ENCRADGRTPADTRELRVTY---ARAEGQATAEIQLGKTRVLTVVTSELTPPYPDRPAEG 81
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++++ P+ + + R V + + + S ++ + L ++ G W +
Sbjct: 82 FLNLNVEYSPMATLGIDNARTNPTLVEVDRVIERCLRQSRALDTEALCVIAGSKVWSLRC 141
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTV-------------SLDDGKIVMLPEEQKE 198
D+ LD G + DAA L+ VAA + ++P V S +DG+ +
Sbjct: 142 DVRILDDAGNVVDAACLATVAALMHFRLPEVTVLTGGSDERSNSSANDGESSVGRVRGGG 201
Query: 199 ENSEKEPV-----NKEKRKLTLGGIPFSLTCILHKNYILA---DPTSEEESIMETLVTVV 250
V KE L + +P +T +L + DPT EE +M +T
Sbjct: 202 GLGHASVVVHHSFEKEPSALPIHHVPICVTFVLFNTSPIVSVIDPTEREELVMGGRITFS 261
Query: 251 LDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
++ ++ ++ K GG LA TS + + ++V + H +L+ ++
Sbjct: 262 INVHREVCAMQKIGGLALAPTSLAR-LAEIAMEKVGDWHSLLQTSL 306
>gi|363752717|ref|XP_003646575.1| hypothetical protein Ecym_4741 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890210|gb|AET39758.1| hypothetical protein Ecym_4741 [Eremothecium cymbalariae
DBVPG#7215]
Length = 305
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 104/249 (41%), Gaps = 29/249 (11%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +++R D R + R I G G +G T + E+ P P EG
Sbjct: 19 LRQNLRLDGRGFDQFREVKIEFG---DEYGDVTVYLGETKVHCRTTAEISQPYDNRPFEG 75
Query: 92 CVSIDFHMPPICSPLVRPGR-PAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVY 150
I M P+ G E ++++ + ++ SG ++L+ L + G W +
Sbjct: 76 LFLISTEMSPMAGTQFEHGNNTGEDEVLISRIIEKSVRRSGALDLEGLCISAGSKCWSIR 135
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK 210
D++ LD DG DA+ ++ +A+ + + P V++ ++ + E++E
Sbjct: 136 ADVHFLDCDGGFIDASCIAVMASLLHFRKPDVTVFGERVTVHSIEERE-----------A 184
Query: 211 RKLTLGGIPFSLTCIL--------------HKNYILADPTSEEESIMETLVTVVLDSSNQ 256
L + IP +T +K + D + +EE + + ++TV L+ + +
Sbjct: 185 VPLGILHIPICVTFSFFNPDATEENIKGDSNKEISIIDASLKEEHLRDGVLTVTLNKNRE 244
Query: 257 LVSLYKPGG 265
+V + K GG
Sbjct: 245 VVQVLKAGG 253
>gi|225710860|gb|ACO11276.1| Exosome complex exonuclease RRP45 [Caligus rogercresseyi]
Length = 364
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 111/244 (45%), Gaps = 20/244 (8%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D R L R+ I +G G+A ++G T +LA+ V P P+EG
Sbjct: 15 LQEGKRLDGRKLDERRDINIHLGREW---GTAEVRLGDTRVLASTSCSVGEPRSVRPNEG 71
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ H+ P+ + E V+ + L + S ++++ L + + W++ L
Sbjct: 72 ILKT--HIEPLSKRSISTETLVELNRVIERVLKE----SKCVDMESLCISSEEKVWIISL 125
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
++ L+ G D A ++ +AA + + P V+L KI + P E++PV+
Sbjct: 126 EMTLLNDAGNAADCASIAGLAALCHFKRPDVTLKGDKIRIHP------FYERDPVS---- 175
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
L + P T L+ L DP+ EEE +M+ V + ++ ++ +L+ G ++ T
Sbjct: 176 -LAIHHHPVLSTFALYGRVALLDPSKEEEIVMDGKVVLGMNPYREICALHLAGQKLVDKT 234
Query: 272 SAVQ 275
+Q
Sbjct: 235 LVLQ 238
>gi|428164753|gb|EKX33768.1| hypothetical protein GUITHDRAFT_155941 [Guillardia theta CCMP2712]
Length = 267
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 120/266 (45%), Gaps = 22/266 (8%)
Query: 39 DARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFH 98
D R +RN + +G V S GSA G T +A+++ E+ E
Sbjct: 2 DGRQRLESRNIQLKVGTVPSCYGSASVHCGGTKAIASVQAELSDTGAEGS-----GASVE 56
Query: 99 MPPICSPL-VRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLD 157
+ CS + GR AE ++ I + + L + +V + AW +++D+ ++
Sbjct: 57 VSVTCSNMPSSAGRQAEDMSAALTADANRIFARPIPTLIKSLMVSDRHAWKLFVDVMLVE 116
Query: 158 ADGALFDAALLSAVAAFSNLQIPTVSL---DDGKI-VMLPEEQKEENSEKEPVNKEKRKL 213
DG L D ++ AA S+ ++PT+S DG + V L E +E+N K+ L
Sbjct: 117 YDGCLLDVVSIAVWAALSDTKLPTLSTFTNADGSVGVELSLEMEEKN---------KKPL 167
Query: 214 TLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSA 273
L +P ++ + +AD T+ EE+ ++ +++ N++ ++K G L T
Sbjct: 168 DLSSVPTYVSITQVGKHFIADATAIEEACAGCRISYAINARNEVCCIHKSEGRGLKPTQI 227
Query: 274 VQDCIALTR---QRVKELHQILEEAI 296
V A T+ R+K L + L++ I
Sbjct: 228 VSTMGAATQFGSNRMKFLDKKLQDLI 253
>gi|425771553|gb|EKV09992.1| 3' exoribonuclease family protein [Penicillium digitatum Pd1]
gi|425777048|gb|EKV15242.1| 3' exoribonuclease family protein [Penicillium digitatum PHI26]
Length = 387
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/377 (20%), Positives = 151/377 (40%), Gaps = 113/377 (29%)
Query: 19 FRRLFPLRYFERHLAE-------SIRPDARSLSRARNTTISMGAVASADGSALAKIGSTT 71
F RL P Y HL+ SIR + R+ S+ R T+ + G++ +GSA+ +IG T
Sbjct: 22 FARLQPHAYLLAHLSPPPASNQPSIRANGRTASQFRVTSANAGSLTHTNGSAVVRIGDTA 81
Query: 72 MLAAIKMEVM---------------------------TPSLESPDEGCVS-IDFHMPPI- 102
+ ++ E++ + S + D+G + ++ +P +
Sbjct: 82 AVCGVRAEILDTKDIASWSVLQASSEKTLDKSNDVGASESQDEEDQGHIQDLNLLVPNLS 141
Query: 103 ----CSPLVRPGRPAEA-APVVAKQLSDTISSSGMINLKELSLV-------------GG- 143
C+P PG P A A ++ Q+ + +S ++ +L + G
Sbjct: 142 LSTGCAPGFTPGAPPSALAQALSHQILSLLHTSRLVRADDLRIWYQPPNLDSEEFRNAGE 201
Query: 144 ----------------KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD-D 186
KA W++Y+D+ + G FDAA S +AA + ++P D D
Sbjct: 202 AMDVDTEQSEGPEREVKAFWVLYIDVMIISLAGNPFDAAWASVLAALRDTKLPKAWWDAD 261
Query: 187 GKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLT-CIL------------------- 226
+ ++ ++ RKL+L G+P + + C
Sbjct: 262 NETILCSDDV-----------SNARKLSLRGLPVASSFCSFEGDAAAGWRAVVIPDADEQ 310
Query: 227 ------HKNYILADPTSEEESIMETLVTVVLDSSNQ---LVSLYKPGGAVLAYTSAVQDC 277
+ +ILADP EE + + +VV+D + +V + K GG + + ++
Sbjct: 311 KRKKGAQQRWILADPDGYEEGLSQERASVVVDKESGKTVIVKIEKHGGWAVD-SDDLRQL 369
Query: 278 IALTRQRVKELHQILEE 294
+ ++ QR E+ +IL++
Sbjct: 370 VDVSAQRWDEMKRILDQ 386
>gi|339244851|ref|XP_003378351.1| 3' exoribonuclease family, domain 1 [Trichinella spiralis]
gi|316972750|gb|EFV56404.1| 3' exoribonuclease family, domain 1 [Trichinella spiralis]
Length = 309
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 7/223 (3%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y +IR D RS R R I + SA+GSAL +IG ++ A++ ++ TP
Sbjct: 13 YVTEGFEMNIREDGRSRDRFRPVLIRTNVIESANGSALVQIGEMSVTASVWLDFGTPLET 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+PD+G + + A +++ S + K+L LV G+
Sbjct: 73 APDQGMIEFKSRFFISEESDEETSNDVKEAENISRIFKQAYYSQSAFDRKQLCLVTGRLC 132
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W + +D+ + G LFD A ++ A N IP V P+ + + +
Sbjct: 133 WNLKVDLLIMGKGGNLFDVASIAVKMALHNTIIPQVEAS------CPKNDTRTINIENDI 186
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTV 249
NK L + +P +T ++ + D +E M ++ +
Sbjct: 187 NK-GFSLNISNVPMLVTIGIYGTMHIIDMNQKESECMHKIMVI 228
>gi|169608692|ref|XP_001797765.1| hypothetical protein SNOG_07432 [Phaeosphaeria nodorum SN15]
gi|111063778|gb|EAT84898.1| hypothetical protein SNOG_07432 [Phaeosphaeria nodorum SN15]
Length = 368
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 152/324 (46%), Gaps = 62/324 (19%)
Query: 19 FRRLFPLRYFERHLAES----IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLA 74
F + P + + HL+ + +R +ARS R I+ G++ A+GSA+ ++G+T+++
Sbjct: 53 FAAVSPHPFLQAHLSANRKTPLRANARSAHAFRRPGINTGSLTHANGSAVVRLGNTSVVC 112
Query: 75 AIKMEVM-----------TPSLESPD----EGCVSIDFHMPPI-----CSPLVRPGR-PA 113
++ E++ + +++S D E ++ +P + +P PG P+
Sbjct: 113 GVRAEILKEADIPGTNDFSSAIDSEDGDDAEEIDTLRLVVPNVELSTGSTPNHIPGNAPS 172
Query: 114 EAAPVVAKQLSDTISSSGMINLKELSLVGG----------------KAAWMVYLDIYCLD 157
A + ++ + SS ++ ++L ++ K W++Y+D++ +
Sbjct: 173 TFAQSLITRMRSLLVSSRLLRARDLRILYTPSANTEDVDEEPQTVVKGYWVLYIDVFFIS 232
Query: 158 ADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGG 217
DG+ FDAA LS +AA + ++P D EE + +PV E + L L G
Sbjct: 233 IDGSAFDAAWLSLLAALRDTKLPRAWFD--------EEFEGILCSDDPV--EAKTLELRG 282
Query: 218 IPFSLTCILHK---------NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
+P T + + ++L+DP + EE + V VV+D +++ + K GG V+
Sbjct: 283 LPVPATFAVFEGKSEDEGDVQWVLSDPDAFEEGVCRESVCVVVD-GGKVLRIEKSGGGVV 341
Query: 269 AYTSAVQDCIALTRQRVKELHQIL 292
A++D + + +R +E+ + L
Sbjct: 342 G-RQAMKDLVQMAGERCREVEKAL 364
>gi|167518071|ref|XP_001743376.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778475|gb|EDQ92090.1| predicted protein [Monosiga brevicollis MX1]
Length = 330
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 108/233 (46%), Gaps = 15/233 (6%)
Query: 67 IGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPV-VAKQLSD 125
+G T ++A + EV+ P + EG + + R + V + + L
Sbjct: 55 LGKTRVMAQLTCEVVAPHPDYDSEGFFRFNVSIAAGAGIAYAAQRSSSEEIVELTRLLER 114
Query: 126 TISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD 185
+ I+ + L +V G+ W V +D+ L+ G + D L+A+A + P VSL
Sbjct: 115 AFKEARAIDSESLCIVKGEKVWEVRVDVTVLENGGNMADGVCLAALAGILTFRRPYVSLT 174
Query: 186 DGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLT--CILHKNYILADPTSEEESIM 243
G++ + E E EPV+ L++ P ++T I ++L DPTS EE++
Sbjct: 175 GGQVKIHSLE------EHEPVS-----LSVHHRPIAVTIASIAGGRHLLVDPTSLEEAVA 223
Query: 244 ETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
E +TV L+ ++ S+ GG L+ +++ + L +++ + LE+A+
Sbjct: 224 EGCITVCLNGHGEICSINSGGGTPLS-PEQMKELLQLAKRKHAVFNHTLEQAM 275
>gi|189198756|ref|XP_001935715.1| 3' exoribonuclease family protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187982814|gb|EDU48302.1| 3' exoribonuclease family protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 347
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 125/289 (43%), Gaps = 65/289 (22%)
Query: 19 FRRLFPLRYFERHLA----ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLA 74
F + P + + HL+ + +R + R+ + R I+ G++ +GSA+ ++G+T+++
Sbjct: 18 FAAVSPHPFLQAHLSAEKKKPVRANGRTSNEYRTPGINTGSLTHCNGSAVVRLGNTSVVC 77
Query: 75 AIKMEVM-------------------TPSLESPDEGCVSIDFHMPPI-----CSPLVRPG 110
++ E++ + E+ E + +P + +P PG
Sbjct: 78 GVRTEILKEADIPGTYEYPGQTAGQDSEQDENDGEEIEGLRLLVPNVELSTGSTPSHIPG 137
Query: 111 R-PAEAAPVVAKQLSDTISSSGMINLKELSLVGG----------------KAAWMVYLDI 153
P+ A + ++ + S+ ++ L ++ K W++YLD+
Sbjct: 138 NAPSTYAQTLITRIRSLLHSTRLLRASNLRILHKPSTNPEDPDTEAETQLKGYWVLYLDV 197
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKL 213
+ + DG FDAA +S +AA + +P D EE + +P KE R+L
Sbjct: 198 FFISIDGNAFDAAWISILAALRDTLLPHAYFD--------EEYEGILCSDDP--KEARRL 247
Query: 214 TLGGIPFSLTCILHK----------NYILADPTSEEESIMETLVTVVLD 252
L G+P T + + +++L+DP + EE + +VTVV+D
Sbjct: 248 ALRGLPIPSTYAVFEGRREEEDEEVDWVLSDPDAFEEGVCREIVTVVVD 296
>gi|403346784|gb|EJY72799.1| Polymyositis/scleroderma autoantigen 1 [Oxytricha trifallax]
Length = 463
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 123/288 (42%), Gaps = 45/288 (15%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ E+ + R DAR L R+ + G + +G L KIG T +L +++++P
Sbjct: 12 FLEQAIKSKFRVDARGLYDYRHVDVRFG---NENGQVLLKIGKTHILTQASLKLVSPQPG 68
Query: 87 SPDEGCVSID------FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSL 140
P+EG + H S + +E + + + + SS + + L +
Sbjct: 69 KPNEGFFRFNTEFSSLLHSAEYTSSI---NTLSEMRVDITRFIDKVLKSSRATDRESLCI 125
Query: 141 VGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEEN 200
V G+ W + +D++ L+ DG + DA +++V N ++P V++ ++
Sbjct: 126 VQGRLVWSLSVDLFLLNEDGNVMDACFIASVLCLMNTRLPEVTISKDQV----------- 174
Query: 201 SEKEPVNKEKRK-LTLGGIPFSLTC---------ILHKNYILADPTSEEESIMETLVTVV 250
+N EK K L + IP T IL+ N +EE + ++ +++
Sbjct: 175 ----KINYEKVKYLNVHHIPICTTFYFIEGIDQPILYAN-------GKEEKLAKSRLSMC 223
Query: 251 LDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISG 298
++ L + G + + +Q C + Q+ KEL +I+ EA +
Sbjct: 224 MNIFEDLCGMSTLGCLEIDPITIIQ-CSKIALQKTKELTRIIREAFAN 270
>gi|451855976|gb|EMD69267.1| hypothetical protein COCSADRAFT_32014 [Cochliobolus sativus ND90Pr]
Length = 346
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 126/288 (43%), Gaps = 64/288 (22%)
Query: 19 FRRLFPLRYFERHLA----ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLA 74
F + P + + HL+ + +R + R+ + R ++ G++ +GSA+ ++G+T+++
Sbjct: 18 FAAVSPHPFLQAHLSAEKKKPVRANGRTANEFRTPGVNTGSLTHCNGSAVVRLGNTSVVC 77
Query: 75 AIKMEVM-----TPSLESP------------DEG-------CVSIDFHMPPICSPLVRPG 110
++ E++ + + E P D+G V + + +P PG
Sbjct: 78 GVRAEILKEEDISGAFEYPKDLTGQGDTAQEDDGEEVEELRLVVPNVELSTGSTPSHIPG 137
Query: 111 R-PAEAAPVVAKQLSDTISSSGMINLKELSLVGG----------------KAAWMVYLDI 153
P+ A + ++ I S+ ++ +L ++ K W++YLDI
Sbjct: 138 NAPSTYAQTLITRIRSLIHSTRLLRASDLRILYKPSTNPEDPDVEAETQLKGYWVLYLDI 197
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKL 213
+ + DG FDAA +S +AA + IP D+ +L + + E R+L
Sbjct: 198 FFISIDGNAFDAAWISMLAALCDTLIPHAYYDEEFEGILCSDNPQ----------EARRL 247
Query: 214 TLGGIPFSLTCILHK---------NYILADPTSEEESIMETLVTVVLD 252
L G+P T + + +++L+DP + EE + V+VV+D
Sbjct: 248 RLQGLPIPSTYAVFEGRKEEDEDVDWVLSDPDAFEEGVCRETVSVVVD 295
>gi|194766922|ref|XP_001965573.1| GF22565 [Drosophila ananassae]
gi|190619564|gb|EDV35088.1| GF22565 [Drosophila ananassae]
Length = 412
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/272 (20%), Positives = 124/272 (45%), Gaps = 17/272 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ ++ + ++ R D R + R+ ++ GA G+ +G T +LA + ++ P+
Sbjct: 19 FVQQAVKQNHRLDGRRSNECRDVQLTFGADW---GTVAVTLGETKVLAQVSSDIGVPTTA 75
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+EG + ++ ++ + + + L T SS ++L+ L + +
Sbjct: 76 RANEGKLQLNVNIGGVAFLDEAQSTHDQRFLTLNSLLERTFRSSRCLDLESLCVAAEQHV 135
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W V +DI L+ DG L+DA+ ++ +AA + + P V+ + ++ + E++
Sbjct: 136 WCVRVDINVLNHDGNLYDASTIATLAALMHYRRPDVTFAEDELRIYTEKE---------- 185
Query: 207 NKEKRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+E + L P S+T ++K + + DP+ EE+ ++++ + +S +L +L G
Sbjct: 186 -REFQPLLFLHYPVSVTYCIYKSSSQPIVDPSLLEENAADSVIVLSFNSYKELCTL-NAG 243
Query: 265 GAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
G+ + C R K L + +A+
Sbjct: 244 GSAPTNVRTIMQCARNAATRSKALVDFIRKAL 275
>gi|385301287|gb|EIF45489.1| rrp45p [Dekkera bruxellensis AWRI1499]
Length = 261
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 105/252 (41%), Gaps = 47/252 (18%)
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAP--- 117
G K+G T + I + P + P EG I+ + P+CSP + A
Sbjct: 12 GHVDVKLGKTEVACKISASIEQPYKDRPFEGLFQINTEISPMCSPFFEVSQGAAGGTSSR 71
Query: 118 ------VVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAV 171
++++ + ++ S ++L+ L LV G W V D++ L+ DG DA+ ++ +
Sbjct: 72 QTSEEILISRMIEKSVRRSNALDLENLCLVAGSKCWSVRADLHFLNYDGNFIDASCIAVM 131
Query: 172 AAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYI 231
A + + P V + IV+ +Q ++PV L++ IP +T +
Sbjct: 132 TALLHFKKPDVEVSGDDIVVFDTKQ------RDPV-----PLSILHIPLCVT------FN 174
Query: 232 LADPTSEEESIM-----ETLV---------------TVVLDSSNQLVSLYKPGGAVLAYT 271
+P +EE+I E +V T+ L+ + ++ L K GG +
Sbjct: 175 FYNPNGDEENIKGESNGELIVVDTNLIEERLSLGSMTITLNKNQEVCQLLKSGGLNID-A 233
Query: 272 SAVQDCIALTRQ 283
S + +C + Q
Sbjct: 234 SLIMNCWYICCQ 245
>gi|145476653|ref|XP_001424349.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391413|emb|CAK56951.1| unnamed protein product [Paramecium tetraurelia]
Length = 299
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 102/241 (42%), Gaps = 22/241 (9%)
Query: 31 HLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDE 90
LA R D R + R G ++ G+ +G T + A + TP+ P E
Sbjct: 9 QLALGKRIDGRDPLQQRMIQCHFGPQST--GAVELSLGETRVFATTSASITTPNPIRPSE 66
Query: 91 GCVSIDFHMP-PICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMV 149
G + FH+ + P + + K + I S ++ + L ++ GK W +
Sbjct: 67 GF--LKFHLDLQVLRDTGYMHNPIKLGMEIEKYIEKVIKGSKALDTESLCILSGKNVWSI 124
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKE 209
+++ ++ DG L DA L + + + + P VS+ + K V K
Sbjct: 125 DVNVALINNDGNLLDAMYLCCIFSLQHFRRPQVSVSLQGV-------------KVEVEKR 171
Query: 210 KRKLTLGGIPFSLT-CILHKN---YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
L++ IP SLT IL N +L DP EEE++ +T ++ N + ++KPGG
Sbjct: 172 LVPLSIHHIPLSLTYAILELNEQTILLQDPCLEEEAVQNGRITYSVNIYNDICHVHKPGG 231
Query: 266 A 266
+
Sbjct: 232 S 232
>gi|256066133|ref|XP_002570477.1| exonuclease [Schistosoma mansoni]
gi|353231507|emb|CCD77925.1| putative exosome complex exonuclease rrp42 (ribosomal rna
processing protein 42) [Schistosoma mansoni]
Length = 254
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 39 DARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFH 98
D R S R I ++ A GSA +IG T ++ +KMEV PSL + EG + I+
Sbjct: 2 DGRGPSEYRPLEIETNILSHATGSASIRIGETFIVCCVKMEVGKPSLTNTSEGRIEINVE 61
Query: 99 MPPICSPLVRPGRPAEAAPVVAKQLSDTISSS---GMINLKELSLVGGKAAWMVYLDIYC 155
C P +AA + ++L T+ S+ I+L L + G+ W++Y+D+
Sbjct: 62 ----CYPTATHRCNEKAASELEERLKTTLQSAYQLKFIDLSPLCIQRGRQCWVIYIDLLI 117
Query: 156 LDADGALFDAALLSAVAAFSN 176
L+ G L DA+ L AA N
Sbjct: 118 LEGAGNLLDASSLVVKAALLN 138
>gi|380480855|emb|CCF42188.1| exosome complex exonuclease RRP43 [Colletotrichum higginsianum]
Length = 342
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 77/351 (21%), Positives = 145/351 (41%), Gaps = 82/351 (23%)
Query: 11 SSEMEVDAFRRLFPLRYFERHL-----AESIRPDARSLSRARNTTISMGAVASADGSALA 65
S + D F +L P + +L A + R + R+ AR ++ ++ A+GSA+
Sbjct: 4 SKGLPRDTFAKLSPHPFLLANLQPPAPANAARSNGRAPDEARIPNVNTSSLTHANGSAVV 63
Query: 66 KIGSTTMLAAIKMEVM----TPSLES--------PDEGCVSIDFHMPPI-----CSPLVR 108
+ G TT++ ++ E + P+ + P D +P I C+P
Sbjct: 64 RTGDTTVICGVRAETILAADIPNFRTAANLDETKPGSELKDYDLLVPNIELATGCAPQFL 123
Query: 109 PGRPAEA-APVVAKQLSDTISSSGMINLKELSLV-------------------------- 141
PG P A ++ ++ + SS +++ ++L +
Sbjct: 124 PGVPPTTLAQTLSTRVYSLLHSSKLVDPEDLRIWYTRPAESAEAEDDDDDDKMDGDAEKS 183
Query: 142 --GGKAA---WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQ 196
G KA W++Y+DI+ + DG FD A + +AA + IP D P+ +
Sbjct: 184 GEGEKAVMAYWVLYIDIFFISFDGNPFDVAWTAILAALRDTTIPIARWD-------PDRE 236
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLTCILH------------KNYILADPTSEEESIME 244
S EP + LTL G P + T + K + L D + EES+ +
Sbjct: 237 MVICSRDEP-----KPLTLHGFPVACTAGVFAEKETTDRPSAGKFWTLVDLDTLEESLCD 291
Query: 245 TLVTVVLDSS---NQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
+T V+D S +++S+ K GG VL +++ + + +R +++ + +
Sbjct: 292 EQITAVVDRSGGDTKVLSISKHGGTVLQ-PQLIREFVGVAERRWEQVWKAM 341
>gi|59809424|gb|AAH89995.1| Exosc7 protein, partial [Rattus norvegicus]
Length = 257
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 106/218 (48%), Gaps = 17/218 (7%)
Query: 56 VASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRP---GRP 112
V++ GSA K+G T +L +K E+ TP LE P EG ++F + CS P GR
Sbjct: 8 VSNTSGSARVKLGHTDILVGVKAEMGTPKLERPSEG--YLEFFVD--CSANATPEFEGRG 63
Query: 113 AE-AAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAV 171
+ +A L ++ ++L+ L + + W++Y+D+ L+ G LFDA ++
Sbjct: 64 GDDLGTEIANTLYRIFNNKSSVDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVK 123
Query: 172 AAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNY 230
AA N +IP ++ +L +E+ ++ E + +L++ +P +T C + +
Sbjct: 124 AALFNTRIP-------RVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGCRH 176
Query: 231 ILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL 268
++ D T +EE+ + V + S + + K G L
Sbjct: 177 VV-DATLQEEACSLASLLVSVTSKGVVTCMRKVGKGSL 213
>gi|147819993|emb|CAN60558.1| hypothetical protein VITISV_035872 [Vitis vinifera]
Length = 105
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 48/57 (84%)
Query: 132 MINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGK 188
MINLKELSLV GK AWM YL++YCLDA G+L DAALL+ VAAFS+L+IP VSL+ K
Sbjct: 1 MINLKELSLVSGKTAWMAYLEVYCLDAYGSLLDAALLAVVAAFSHLRIPVVSLERIK 57
>gi|255950938|ref|XP_002566236.1| Pc22g23450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593253|emb|CAP99633.1| Pc22g23450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 387
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 77/377 (20%), Positives = 150/377 (39%), Gaps = 113/377 (29%)
Query: 19 FRRLFPLRYFERHLAE-------SIRPDARSLSRARNTTISMGAVASADGSALAKIGSTT 71
F RL P Y HL+ S+R + R+ S+ R T+ + G++ +GSA+ +IG T
Sbjct: 22 FARLQPHAYLLAHLSPPPASNQPSVRANGRATSQFRVTSANAGSLTHTNGSAVVRIGDTA 81
Query: 72 MLAAIKMEVM---------------------------TPSLESPDEGCVS-IDFHMPPI- 102
+ ++ E++ + + + D G + ++ +P +
Sbjct: 82 AVCGVRAEILHTKDIASWSVLQASSEQNLDKSNDVGVSETHDEEDRGHIQDLNLLVPNLS 141
Query: 103 ----CSPLVRPGRPAEA-APVVAKQLSDTISSSGMINLKELSLV-------------GG- 143
C+P PG P A A ++ Q+ + S+ ++ +L + G
Sbjct: 142 LSTGCAPGFTPGAPPSALAQSLSHQILSLLHSTRLVRADDLRIWYQPPNLDSEEFRNAGE 201
Query: 144 ----------------KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD-D 186
KA W++Y+D+ + G FDAA S +AA + ++P D D
Sbjct: 202 GMDVDTEQSEGSEREIKAFWVLYIDVMIISLAGNPFDAAWASVLAALRDTKLPKAWWDAD 261
Query: 187 GKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLT-CIL------------------- 226
+ ++ + + RKL+L G+P + + C
Sbjct: 262 NETILCSDNV-----------ADARKLSLRGLPIASSFCSFEGDAAAGWRAVVIPDAEEQ 310
Query: 227 ------HKNYILADPTSEEESIMETLVTVVLDSSNQ---LVSLYKPGGAVLAYTSAVQDC 277
+ +ILADP EE + + +VV+D N +V + K GG + + ++
Sbjct: 311 KQKKGAQQRWILADPDGYEEGLSQERASVVVDKENGKTVIVKMEKHGGWTVD-SDDLRQL 369
Query: 278 IALTRQRVKELHQILEE 294
+ ++ +R E+ +IL++
Sbjct: 370 VDVSARRWDEMKRILDQ 386
>gi|323334135|gb|EGA75519.1| Rrp45p [Saccharomyces cerevisiae AWRI796]
Length = 255
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 109/246 (44%), Gaps = 29/246 (11%)
Query: 67 IGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGR-PAEAAPVVAKQLSD 125
+G+T + I ++ P + P EG I + P+ G E + ++ +
Sbjct: 1 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEK 60
Query: 126 TISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD 185
++ SG ++++ L +V G W V D++ LD DG DA+ ++ +A + + P +++
Sbjct: 61 SVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVH 120
Query: 186 DGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL--------------HKNYI 231
+I++ P +E+EPV L + IP +T +
Sbjct: 121 GEQIIVHPV------NEREPV-----PLGILHIPICVTFSFFNPQDTEENIKGETNSEIS 169
Query: 232 LADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA---VLAYTSAVQDCIALTRQRVKEL 288
+ D T +EE + + ++TV L+ + ++V + K GG L + ++ + ++
Sbjct: 170 IIDATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQI 229
Query: 289 HQILEE 294
Q+L+E
Sbjct: 230 LQLLKE 235
>gi|302509392|ref|XP_003016656.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Arthroderma benhamiae CBS 112371]
gi|291180226|gb|EFE36011.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Arthroderma benhamiae CBS 112371]
Length = 178
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 78/145 (53%), Gaps = 14/145 (9%)
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKE 209
Y D++ LD DG L DA+ L+ +A + ++P ++ DG++ + E EK PV
Sbjct: 20 YEDVHILDCDGGLIDASCLAILAGLLHFRLPESTVRDGEVTVFTTE------EKVPV--- 70
Query: 210 KRKLTLGGIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAV 267
+L L IP S+T L+ +L D T+ EE++ E + V LD + ++ KP GA
Sbjct: 71 --QLNLTKIPLSVTFNLYDEGRIMLLDATASEEAVSEGSLVVALDKTGEIALYSKPDGAP 128
Query: 268 LAYTSAVQDCIALTRQRVKELHQIL 292
+ V +C L ++V+EL+++L
Sbjct: 129 ADPVNMV-NCSTLALEKVRELNKLL 152
>gi|452003541|gb|EMD95998.1| hypothetical protein COCHEDRAFT_1152086 [Cochliobolus
heterostrophus C5]
Length = 346
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 125/288 (43%), Gaps = 64/288 (22%)
Query: 19 FRRLFPLRYFERHLA----ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLA 74
F + P + + HL+ + +R + R+ + R ++ G++ +GSA+ ++G+T+++
Sbjct: 18 FAAVSPHPFLQAHLSAEKKKPVRANGRTANEFRTPGVNTGSLTHCNGSAVVRLGNTSVVC 77
Query: 75 AIKMEVM-----TPSLESPDE-------------------GCVSIDFHMPPICSPLVRPG 110
++ E++ + + E P + V + + +P PG
Sbjct: 78 GVRAEILKEEDISGAFEYPKDLTGQNDTAQEDDSEEIEELRLVVPNVELSTGSTPSHIPG 137
Query: 111 R-PAEAAPVVAKQLSDTISSSGMINLKELSLVGG----------------KAAWMVYLDI 153
P+ A + ++ I S+ ++ +L ++ K W++YLDI
Sbjct: 138 NAPSTYAQTLITRIRSLIHSTRLLRASDLRILYKPSTNPDDPDVEAETQLKGYWVLYLDI 197
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKL 213
+ + DG FDAA +S +AA + IP D+ +L + ++E R+L
Sbjct: 198 FFISIDGNAFDAAWISMLAALRDTLIPHAYYDEEFEGILCSDN----------SQEARRL 247
Query: 214 TLGGIPFSLTCILHK---------NYILADPTSEEESIMETLVTVVLD 252
L G+P T + + +++L+DP + EE + V+VV+D
Sbjct: 248 RLQGLPIPSTYAVFEGRKEEDEDVDWVLSDPDAFEEGVCRETVSVVVD 295
>gi|302918312|ref|XP_003052633.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733573|gb|EEU46920.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 336
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 137/317 (43%), Gaps = 71/317 (22%)
Query: 11 SSEMEVDAFRRLFPLRYFERHL-----AESIRPDARSLSRARNTTISMGAVASADGSALA 65
+S + F +L P Y +L A R + R+ + R +++ +++ A GS+L
Sbjct: 4 ASGLSRSTFAKLSPHPYLLANLDPSDDAAPARSNRRAPTDVRIPSVNASSLSHAHGSSLV 63
Query: 66 KIGSTTMLAAIKMEVM----TPSLESPDEGC--VSIDFHMPPI-----CSPLVRPGRPAE 114
++G TT++ ++ E + PS + + D +P I C+P PG P
Sbjct: 64 RMGDTTVICGVRGETILTSNIPSYRASNTETELKEYDLLVPNIELATGCAPQFLPGGPPS 123
Query: 115 A-APVVAKQLSDTISSSGMINLKELSLV-------------------------GGKAA-- 146
A ++ ++ + SS +I ++L + G KA
Sbjct: 124 TLAQTLSTRVYSLLHSSKVIKPEDLRIWHTLPAENLEADDEDRMEEDETETKDGEKAVVA 183
Query: 147 -WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W++Y+DI+ + DG FDAA +AA + ++P D + ++ + K+P
Sbjct: 184 YWVLYVDIFFISFDGNPFDAAWAGTLAALRDTKLPRARYDADRETIV-------CTRKDP 236
Query: 206 VNKEKRKLTLGGIPFSLTCILH-----------KNYILADPTSEEESIMETLVTVVLDSS 254
+ LT+ IP + T + K ++LADP EES+ + VT+V+D
Sbjct: 237 I-----PLTITSIPVACTAAVFTGKETDRPTDGKFWMLADPDRLEESLCDESVTIVVDCK 291
Query: 255 N---QLVSLYKPGGAVL 268
+ +++S+ K GG L
Sbjct: 292 DGDMKILSISKHGGTAL 308
>gi|213410258|ref|XP_002175899.1| exosome subunit Rrp45 [Schizosaccharomyces japonicus yFS275]
gi|212003946|gb|EEB09606.1| exosome subunit Rrp45 [Schizosaccharomyces japonicus yFS275]
Length = 291
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 126/274 (45%), Gaps = 19/274 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L+ +R D R + R I G G +G T +L I ++ P + P +G
Sbjct: 19 LSNGVRLDGREMHAFRQPVIKFG---DKFGEVDVSLGETRVLCHITAQIAKPYPDKPFDG 75
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+I + P+ P + GR ++ ++++ + ++ S ++ + L ++ G+ W V
Sbjct: 76 IFTIHTELTPMAHPSLEAGRLSDQEVLISRLIETSVRRSRALDTESLCILSGQKCWSVRA 135
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
++ ++ DG + DAA L+ VAA + + P V++ ++V+ E E+ PV
Sbjct: 136 TVHFVNHDGNMVDAACLAVVAALCHYRRPDVTVTGEEVVVHSPE------ERVPV----- 184
Query: 212 KLTLGGIPFSLT-CILHKNYI-LADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
L++ +P T H I + D T+EEE + +T+ L+ + ++ +K GG +
Sbjct: 185 PLSVLHMPICTTFFFFHDGSISVTDATAEEEELSTGTMTITLNKNREICQFFKAGGVPID 244
Query: 270 YT---SAVQDCIALTRQRVKELHQILEEAISGME 300
T S T++ ++L Q+L + + E
Sbjct: 245 QTKIISCAHAAFKNTQEICEQLKQVLAQDLQKRE 278
>gi|413935075|gb|AFW69626.1| hypothetical protein ZEAMMB73_456689, partial [Zea mays]
gi|413935078|gb|AFW69629.1| hypothetical protein ZEAMMB73_937743, partial [Zea mays]
Length = 209
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 15/199 (7%)
Query: 98 HMPPICSPLVRPGRPAEAAPVVAKQ---LSDTISSSGMINLKELSLVGGKAAWMVYLDIY 154
H P +PL R R AP+++ Q L + I+L L +V GK W +Y+D
Sbjct: 10 HAGP--APLRR--RHRLRAPLLSLQRCLLGGKSGAGAAIDLSSLIVVDGKVCWDLYIDGL 65
Query: 155 CLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLT 214
+ +DG L DA ++ A S+ IP V++ +E E + ++E +
Sbjct: 66 VVSSDGNLLDALAVAIKVALSDTGIPKVNVS-------VSAASDEEPEVDVSDEEFLQFD 118
Query: 215 LGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAV 274
G+P +T + + D TSEEES M + V+V ++ Q+ L K GGA L S +
Sbjct: 119 TSGVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRHGQICGLTKRGGAGLD-PSVI 177
Query: 275 QDCIALTRQRVKELHQILE 293
D I++ + ++ +L+
Sbjct: 178 FDMISVAKHVSQQFISLLD 196
>gi|238571033|ref|XP_002386955.1| hypothetical protein MPER_14569 [Moniliophthora perniciosa FA553]
gi|215440457|gb|EEB87885.1| hypothetical protein MPER_14569 [Moniliophthora perniciosa FA553]
Length = 81
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 55/77 (71%)
Query: 51 ISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPG 110
++G++++A+GSAL ++G+TT++ +K E+ P L+ P++G + + +P ICS +PG
Sbjct: 3 FTIGSISTANGSALVRMGNTTVVCGVKAEIAEPELDKPNDGFLVPNIDLPAICSSKFKPG 62
Query: 111 RPAEAAPVVAKQLSDTI 127
P+E A V++++L+D +
Sbjct: 63 PPSEEAQVISERLNDAL 79
>gi|343426851|emb|CBQ70379.1| probable RRP45-Exosome complex exonuclease [Sporisorium reilianum
SRZ2]
Length = 316
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 127/303 (41%), Gaps = 57/303 (18%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +R D RS AR+ IS G G+ I T + ++K ++ P + P EG
Sbjct: 21 LQSGVRVDGRSFLSARDIDISFGEEL---GNVSVTIKGTRVSTSVKATLIPPRSDRPYEG 77
Query: 92 CVSIDFHMPPIC-----SPLVRPGRPAEAAPVVAKQL-SDTISSSGMINLKELSLVGGKA 145
+ I + P+ + A A V+ ++L + + ++ + L +V G+
Sbjct: 78 FLQITTDISPMAGIEYDTTGGGANSSARAREVLFERLIEKAVRRTEAVDREALCVVAGEQ 137
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W V+L ++ L GA DAA+L ++ + + + P ++D+G V L E+ P
Sbjct: 138 VWNVHLSVHLLSDTGAALDAAVLCSMLSLRHFRRPDYAIDNGTHVHL-----FSTDERVP 192
Query: 206 VNKEKRKLTLGGIPFSLTCILHKNY---------------------------ILADPTSE 238
V L + P +T + N L DPT
Sbjct: 193 V-----PLAIHHTPLCVTFAIFNNLPAASSTKTDKDSLIDPSSSSFAPASTAALLDPTLL 247
Query: 239 EESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQ-----DCIALTRQRVKELHQILE 293
EES+ + +T+VL++ ++ L K +Y S +Q D I + RV++L Q LE
Sbjct: 248 EESLATSKLTLVLNAQREICVLDK------SYGSPIQPQLLLDLIQVGLNRVQQLTQTLE 301
Query: 294 EAI 296
+A+
Sbjct: 302 QAL 304
>gi|452825084|gb|EME32083.1| exosome complex component RRP42 [Galdieria sulphuraria]
Length = 275
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 105/232 (45%), Gaps = 16/232 (6%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L R ++ +G + SA GS+ ++G T +L +K+EV S D V +
Sbjct: 21 RLDGRQLFEYRPISLQVGVLPSASGSSRLRLGETEVLVGVKVEVGDVVESSNDN--VQLL 78
Query: 97 FHMPPICSPLVRP---GRPAEA-APVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLD 152
F + CS GR AE+ + + L ++ + + + LSLV GK W+ +D
Sbjct: 79 FTVE--CSGSASADFLGREAESWSSELQNALESAYRAANVFDDERLSLVPGKFCWLFKVD 136
Query: 153 IYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRK 212
I LD G + DA ++ A S +P V ++ E E + P + K
Sbjct: 137 ILVLDTGGNMMDAISMATRTALSTTLVPRVH------IVQSEGSFELEIDDNPDACDTLK 190
Query: 213 LTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+ P LT L N+ + DP+ +EE+ ++V +D++ + +Y G
Sbjct: 191 VEKA--PTFLTFSLIGNHFVLDPSIQEETCARGKLSVAVDANGDICHVYSFG 240
>gi|342877488|gb|EGU78940.1| hypothetical protein FOXB_10540 [Fusarium oxysporum Fo5176]
Length = 247
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 15/227 (6%)
Query: 74 AAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMI 133
A + EV P + P +G +I + P+ +P RP+ ++++ L TI SG +
Sbjct: 12 AKVSAEVTVPYSDRPFDGVFTITSELSPMVAPSYEVNRPSLEEVLLSRLLEKTIRRSGAL 71
Query: 134 NLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLP 193
+ + L L+ G+ W + +D++ L DG L DAA L+ VAA + + P S++ I +
Sbjct: 72 DTESLCLIAGQKCWSIRVDLHVLTHDGNLTDAACLAVVAALRHFRKPDSSIEGENITIYT 131
Query: 194 EEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILH---KNYILADPTSEEESIMETLVTVV 250
+E+EPV L+ PF +T + +L D EE + + T
Sbjct: 132 P------AEREPV-----PLSWLHSPFCVTFSFFGEDGSQVLVDTNWLEEQLRISHCTYS 180
Query: 251 LDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297
L+ ++ + K GG L +Q C R KEL +++ ++
Sbjct: 181 LNKHGEICQIAKLGGTSLDAPLFIQ-CAQGALNRSKELSDLVDSKLA 226
>gi|350296507|gb|EGZ77484.1| ribosomal protein S5 domain 2-like protein [Neurospora tetrasperma
FGSC 2509]
Length = 357
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 139/349 (39%), Gaps = 88/349 (25%)
Query: 19 FRRLFPLRYFERHLAESIRP---DARSLSRARNTTISMGAVASADGSALAKIGSTTMLAA 75
F +L P Y +L + P + R+ AR I ++A A+GSAL + G TT++
Sbjct: 17 FAKLSPHPYLLTNLTDPENPCRTNGRAPHEARPVHIHTSSLAHANGSALVRTGDTTVVCG 76
Query: 76 IKMEVM-----------TPSLESPD-------EGCVSIDFHMPPI-----CSPLVRPGRP 112
++ E++ PS D + D +P I C+P PG P
Sbjct: 77 VRAEILPVNNIPQYRPQEPSYGEEDNDDSADVDELKDYDLLVPNIELATGCAPQFLPGVP 136
Query: 113 AEA-APVVAKQLSDTISSSGMINLKELSLVGG---------------------------- 143
A ++ ++ + S +++ K L +
Sbjct: 137 PTTLAQTLSTRIYSLLHSCKVVDPKGLRVWYTPPKETREEGAMEVDEAQEEDEEAEERKP 196
Query: 144 --KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENS 201
KA W++Y+D+ + DG FDAA + +AA + ++P D + ++ +E
Sbjct: 197 ELKAYWVLYIDLLFVSFDGNPFDAAWTAVMAALRDTKLPQARWDPDREAVVCSRSEE--- 253
Query: 202 EKEPVNKEKRKLTLGGIPFSLTCILH-----------------KNYILADPTSEEESIME 244
K L + G+P + T + +++IL DP EES+ +
Sbjct: 254 -------AKTGLGVRGLPVACTATVFLEKEHGEDSGTSAERKSRHWILLDPDRLEESLCK 306
Query: 245 TLVTVVLDSSNQ---LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQ 290
VTVV+D S + + S+ K GG V+ ++ I + +R +E+ +
Sbjct: 307 ETVTVVVDCSGEETKVKSIEKHGGTVIG-RELMRGFIGVAERRWQEVKE 354
>gi|408394145|gb|EKJ73387.1| hypothetical protein FPSE_06459 [Fusarium pseudograminearum CS3096]
Length = 336
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 136/311 (43%), Gaps = 75/311 (24%)
Query: 19 FRRLFPLRYFERHLAES---IRPDARSLSRA----RNTTISMGAVASADGSALAKIGSTT 71
F +L P Y +L S +RP ARS RA R T++ +++ A+GSA+ ++G TT
Sbjct: 12 FAKLSPHPYLLANLKPSSNDVRP-ARSNGRASDEVRAPTVNASSLSHANGSAVVRVGDTT 70
Query: 72 MLAAIKMEVM----TPSLESPDEGC--VSIDFHMPPI-----CSPLVRPGRPAEA-APVV 119
++ ++ E + PS + + D +P I C+P PG P A +
Sbjct: 71 VICGVRAETILTQNIPSYRAANTETELKEYDLLVPNIELATGCAPQFLPGGPPSTLAQTL 130
Query: 120 AKQLSDTISSSGMINLKELSLVGGK---------------------------AAWMVYLD 152
+ ++ + SS +I+ ++L + A W++Y+D
Sbjct: 131 STRIYSLLHSSKIIHPEDLRIWHTAPSEDFEAAEDRMEEDDAETVNENRSVVAYWVLYID 190
Query: 153 IYCLDADGALFDAALLSAVAAFSNLQIPTVSLD-DGKIVMLPEEQKEENSEKEPVNKEKR 211
I+ + DG FDAA + +AA + ++P D D ++++ K+ R
Sbjct: 191 IFFISFDGNPFDAAWAATMAALRDTKLPGARFDLDREMIICSR-------------KDSR 237
Query: 212 KLTLGGIPFSLTCILHKN-----------YILADPTSEEESIMETLVTVVLDSSN---QL 257
L++ IP + T ++ ++L DP EES+ + VT+V+D + +
Sbjct: 238 PLSITSIPIACTAVVFTGKETDRPTDGEFWMLVDPDRLEESLCDESVTIVVDCKDDDVNI 297
Query: 258 VSLYKPGGAVL 268
+S+ K GG L
Sbjct: 298 LSISKHGGIAL 308
>gi|389646935|ref|XP_003721099.1| exosome complex exonuclease RRP43 [Magnaporthe oryzae 70-15]
gi|86196361|gb|EAQ70999.1| hypothetical protein MGCH7_ch7g406 [Magnaporthe oryzae 70-15]
gi|351638491|gb|EHA46356.1| exosome complex exonuclease RRP43 [Magnaporthe oryzae 70-15]
gi|440467025|gb|ELQ36266.1| exosome complex exonuclease RRP43 [Magnaporthe oryzae Y34]
gi|440488969|gb|ELQ68653.1| exosome complex exonuclease RRP43 [Magnaporthe oryzae P131]
Length = 357
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/348 (21%), Positives = 141/348 (40%), Gaps = 90/348 (25%)
Query: 19 FRRLFPLRYFERHLA--ESIRPDARSLSRA----RNTTISMGAVASADGSALAKIGSTTM 72
F +L P + +LA ++ P AR+ RA R ++ G+++ A GSA+ + G TT+
Sbjct: 19 FAKLSPHPFLLANLAPTDNSHPPARTNGRAQTESRVVNVNTGSLSHAQGSAVVRCGDTTV 78
Query: 73 LAAIKMEVMTPSLESP-------DEGCVS------------IDFHMPPI-----CSPLVR 108
+ ++ E++ P P D G ++ D +P I C+P
Sbjct: 79 ICGVRAEIL-PVASIPNYRALEDDAGTLAAGTERGRRELRDYDLLVPNIELATGCAPQFL 137
Query: 109 PGRPAEA-APVVAKQLSDTISSSGMINLKELSLVGG------------------------ 143
PG P A ++ ++ + +S ++++ +L +V
Sbjct: 138 PGVPPSTLAQTLSSRVYSLLHASHLLSVDDLRIVHTPATRSSRPDDGDEAMEEEEDDDDD 197
Query: 144 ------KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
KA W +++D+ + DG FD A + +AA + ++P D+ + ++L Q
Sbjct: 198 GKKPETKAFWTLFIDVLFISFDGNPFDVAWTAVLAALRDTKLPAAKWDEDREMVLCSRQ- 256
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKN------------YILADPTSEEESIMET 245
+ L + G P + T + + ++L DP EE + +
Sbjct: 257 ----------APAKPLGVSGFPVACTAAVVRRRRDDPDVAGDQYWVLVDPDRSEEELCDE 306
Query: 246 LVTVVLDS----SNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELH 289
V+VV+DS +++SL K GG A + + L R KE+
Sbjct: 307 FVSVVVDSEGGDGTKILSLLKLGGTS-AGMEFINRLVTLAEGRWKEIR 353
>gi|84999936|ref|XP_954689.1| exosome complex exonuclease [Theileria annulata]
gi|65305684|emb|CAI74009.1| exosome complex exonuclease, putative [Theileria annulata]
Length = 322
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 114/274 (41%), Gaps = 29/274 (10%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +R D RSL ++ G++L G+T + + E++ P+ E P+EG
Sbjct: 28 LKNGLRIDGRSLDSYLYVSVDFDG---PPGNSLISFGNTVIFTCVSQEIVEPNSERPNEG 84
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ + S PG+ + + L + S ++L+ L + GK + +
Sbjct: 85 FLFFNVETS-FTSECYEPGKTTDQEHNLIYFLENMFKESSCLDLETLCITSGKQVLALRV 143
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
++ L DG L A SA+A+ + + P + L D E N + +
Sbjct: 144 YVHVLQDDGNLLSACSFSALASLLHYRKPLMELSD-----------ELNYSFYGLWHKGT 192
Query: 212 KLTLGGIPFSLTCIL----------HKN---YILADPTSEEESIMETLVTVVLDSSNQLV 258
L + +P +T L H + + +P S E+ +++T + ++ + +++
Sbjct: 193 PLNIYHVPILVTVWLLETRDHSFLDHNSSEYTFVLEPNSFEQKLLKTQIIILFNQFGEVL 252
Query: 259 SLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
+YK G + + I+ ++QR +L+ IL
Sbjct: 253 WIYKNGSTPVP-LETFESAISASKQRASQLYSIL 285
>gi|388851534|emb|CCF54724.1| probable RRP45-Exosome complex exonuclease [Ustilago hordei]
Length = 322
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 129/304 (42%), Gaps = 53/304 (17%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +SIR D RS R+ IS G G+ I T + +++ + P + P EG
Sbjct: 21 LQDSIRVDGRSFLAPRDIHISFGEEL---GNCTVSIKGTRVSTSVRANLFPPRSDRPYEG 77
Query: 92 CVSIDFHMPPIC-----SPLVRPGRPAEAAPVVAKQL-SDTISSSGMINLKELSLVGGKA 145
+ I + P+ S A A V+ +L I + ++ + L +V G+
Sbjct: 78 FLQITTDISPMAGVEYDSTGGGANSSARAKEVLFDRLIEKAIRRTEAVDREALCVVAGEQ 137
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W V+L ++ L GA DAA+L ++ + + + P S+++G V L + E+ P
Sbjct: 138 VWNVHLTVHLLSDTGAALDAAVLCSMLSLRHFRRPDYSIENGNQVRL-----YSSDERVP 192
Query: 206 VNKEKRKLTLGGIPFSLTCILHKNY---------------------------------IL 232
+ L + P +T + + L
Sbjct: 193 I-----PLAIHHTPLCVTFAIFNDLSTTTTATAKSQPDDDHLIDPTSASAAASTSSTVAL 247
Query: 233 ADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
DPT EE++ + +T+VL++ ++ L K G+ +A + + D I + +R++EL + L
Sbjct: 248 LDPTLLEETLAHSKLTLVLNAQKEICVLDKSYGSPIAPQTLL-DLINVGFRRIQELTKKL 306
Query: 293 EEAI 296
EEA+
Sbjct: 307 EEAL 310
>gi|309266685|ref|XP_001481151.2| PREDICTED: exosome complex component rrp43-like [Mus musculus]
Length = 418
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/328 (22%), Positives = 129/328 (39%), Gaps = 87/328 (26%)
Query: 19 FRRLFPLRYFERHLAESIRP---DARSLSRARNTTISMGAVASADGSALAKIGSTTMLAA 75
F +L P Y +L + P + R+ AR I ++A A+GSAL + G TT++
Sbjct: 78 FAKLSPHPYLLTNLTDPENPCRTNGRAPHEARPVHIHTSSLAHANGSALVRTGDTTVVCG 137
Query: 76 IKMEVM-----------TPSLESPD-------EGCVSIDFHMPPI-----CSPLVRPGRP 112
++ E++ PS D + D +P I C+P PG P
Sbjct: 138 VRAEILPVTNIPQYRPREPSYGEEDNDDSADVDELKDYDLLVPNIELATGCAPQFLPGVP 197
Query: 113 AEA-APVVAKQLSDTISSSGMINLKELSLVGG---------------------------- 143
A ++ ++ + S +++ K L +
Sbjct: 198 PTTLAQTLSTRIYSLLHSCKVVDPKGLRVWYTPPKETREEGAMEVDEAQEEEEEEEERKP 257
Query: 144 --KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENS 201
KA W++Y+D+ + DG FDAA + +AA + ++P D + ++ +E
Sbjct: 258 ELKAYWVLYIDLLFVSFDGNPFDAAWTAVMAALRDTKLPQARWDPDREAVVCSRSEE--- 314
Query: 202 EKEPVNKEKRKLTLGGIPFSLTCILH-----------------KNYILADPTSEEESIME 244
K L + G+P + T + +++IL DP EES+ +
Sbjct: 315 -------AKMALDVRGLPVACTATVFLEKEHGEDSGSSAERKSRHWILLDPDRLEESLCK 367
Query: 245 TLVTVVLDSSNQ---LVSLYKPGGAVLA 269
VTVV+D S + + S+ K GG V+
Sbjct: 368 ETVTVVVDCSGEETKVKSIEKHGGTVIG 395
>gi|85113698|ref|XP_964565.1| hypothetical protein NCU03159 [Neurospora crassa OR74A]
gi|28926352|gb|EAA35329.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 357
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/328 (22%), Positives = 129/328 (39%), Gaps = 87/328 (26%)
Query: 19 FRRLFPLRYFERHLAESIRP---DARSLSRARNTTISMGAVASADGSALAKIGSTTMLAA 75
F +L P Y +L + P + R+ AR I ++A A+GSAL + G TT++
Sbjct: 17 FAKLSPHPYLLTNLTDPENPCRTNGRAPHEARPVHIHTSSLAHANGSALVRTGDTTVVCG 76
Query: 76 IKMEVM-----------TPSLESPD-------EGCVSIDFHMPPI-----CSPLVRPGRP 112
++ E++ PS D + D +P I C+P PG P
Sbjct: 77 VRAEILPVTNIPQYRPREPSYGEEDNDDSADVDELKDYDLLVPNIELATGCAPQFLPGVP 136
Query: 113 AEA-APVVAKQLSDTISSSGMINLKELSLVGG---------------------------- 143
A ++ ++ + S +++ K L +
Sbjct: 137 PTTLAQTLSTRIYSLLHSCKVVDPKGLRVWYTPPKETREEGAMEVDEAQEEEEEEEERKP 196
Query: 144 --KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENS 201
KA W++Y+D+ + DG FDAA + +AA + ++P D + ++ +E
Sbjct: 197 ELKAYWVLYIDLLFVSFDGNPFDAAWTAVMAALRDTKLPQARWDPDREAVVCSRSEE--- 253
Query: 202 EKEPVNKEKRKLTLGGIPFSLTCILH-----------------KNYILADPTSEEESIME 244
K L + G+P + T + +++IL DP EES+ +
Sbjct: 254 -------AKMALDVRGLPVACTATVFLEKEHGEDSGSSAERKSRHWILLDPDRLEESLCK 306
Query: 245 TLVTVVLDSSNQ---LVSLYKPGGAVLA 269
VTVV+D S + + S+ K GG V+
Sbjct: 307 ETVTVVVDCSGEETKVKSIEKHGGTVIG 334
>gi|256079799|ref|XP_002576172.1| exonuclease rrp45 [Schistosoma mansoni]
Length = 446
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 118/251 (47%), Gaps = 12/251 (4%)
Query: 54 GAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFH--MPPICSPLVRPGR 111
G + G + KIG+TT++A + +EV+ P P +G + + F + + L R +
Sbjct: 13 GKDPNVSGCCVVKIGATTVMAQVSVEVIEPKHFRPSQGMLFVHFDASILKLSKTLYRKQK 72
Query: 112 PAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAV 171
+ ++ L + S I+L L +V + + V +++ L DG L D L+AV
Sbjct: 73 RDDEGRRLSAVLQTLLRDS--IDLDALCIVAWERVFAVRVELRALSYDGNLGDCGTLAAV 130
Query: 172 AAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYI 231
AA + + P V +DD V++ E K + + +TLG LT +
Sbjct: 131 AALAAFRRPDVYVDDMGKVLVDFEAKFRPRVPLGIRRTPVLVTLG-----LTA--DAKVV 183
Query: 232 LADPTSEEESIME-TLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQ 290
L DPT+ EE I+ V + L +++++ LY G +V S++ CI L + K L
Sbjct: 184 LVDPTAREELILTGGRVLLGLTNTSEICCLYTTGLSVPIQCSSLSRCIHLANSKAKSLVS 243
Query: 291 ILEEAISGMEI 301
++ A+ G+ I
Sbjct: 244 LINWALEGLSI 254
>gi|326430620|gb|EGD76190.1| hypothetical protein PTSG_00897 [Salpingoeca sp. ATCC 50818]
Length = 304
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 105/243 (43%), Gaps = 30/243 (12%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
++ +A +IR D R L R + G + +A+GS+ ++ T +L +K+EV TP+
Sbjct: 27 QFIANGIAANIRCDGRDLLDRRPLELETGNITNANGSSRVQLMGTDVLVGVKVEVATPTD 86
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAA-------PVVAKQLSDTISSSGMINLKEL 138
+ PDEG ++F + + A A +A+QL T S ++LK+L
Sbjct: 87 DRPDEG--MLEFSISSSSANATVAALDARTADKMTRSLEFLAEQLQKT---SHALDLKKL 141
Query: 139 SLVGGKAAWMVYLDIYCLDA-DGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
++ GKA W V +D+ L + G + + L+ AA + IP +L K
Sbjct: 142 CILPGKAVWCVRVDVLVLQSLGGNVVECVFLAIKAALHDTTIPNCTL-----------IK 190
Query: 198 EENSEKEPVNKEKRKLTLGGI------PFSLTCILHKNYILADPTSEEESIMETLVTVVL 251
+ N E + + I P L + + ADP EEE + V V +
Sbjct: 191 DSNGEAVDFDISSNAYDVSPIEGVAEFPVILCFGIIGARVFADPLFEEEECADAFVLVGV 250
Query: 252 DSS 254
+S
Sbjct: 251 SAS 253
>gi|156032965|ref|XP_001585319.1| hypothetical protein SS1G_13558 [Sclerotinia sclerotiorum 1980]
gi|154698961|gb|EDN98699.1| hypothetical protein SS1G_13558 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 209
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 16/189 (8%)
Query: 104 SPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALF 163
SP RP E ++++ L T+ S ++ + L L+ G+ W V D++ L DG L
Sbjct: 3 SPAFETNRPTEQEVLLSRLLEKTLRRSAALDTESLCLIAGQKCWSVRADVHILSHDGNLI 62
Query: 164 DAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLT 223
DA+ ++ +AA + + P S + + + +E+EPV L+L P +T
Sbjct: 63 DASCIAIIAALQHFKKPDTSTEGETVTVYT------LAEREPV-----PLSLLHFPLCVT 111
Query: 224 CILH----KNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIA 279
+ + L D T EE + E T+ ++ ++ + K GG + +Q C
Sbjct: 112 FSFYGKGEEQVRLLDTTLLEEQLREGSCTISMNRHGEVCQIAKLGGIAVDALELLQ-CTN 170
Query: 280 LTRQRVKEL 288
+ ++VK++
Sbjct: 171 MALEKVKDI 179
>gi|449512119|ref|XP_004175654.1| PREDICTED: exosome complex component RRP45-like, partial
[Taeniopygia guttata]
Length = 379
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 83/153 (54%), Gaps = 16/153 (10%)
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQKEENSEKEP 205
W + LD++ L+ DG + DAA ++ + A + + P VS+ ++ V PE E++P
Sbjct: 95 WQIRLDMHLLNHDGNITDAASIAGIVALCHFRRPDVSVQGEEVTVYTPE-------ERDP 147
Query: 206 VNKEKRKLTLGGIPFSLT-CILHKN-YILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P ++ H+ Y+L DPT EE +M+ L+ + ++ +++ ++ +
Sbjct: 148 V-----PLSIHHMPICVSFAFFHQGTYLLVDPTEREERVMDGLLVIAMNKHHEICTI-QS 201
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
G V+ + C +T +V E+ +++++A+
Sbjct: 202 SGVVMLLPDQILRCSKITAVKVAEITELIQKAL 234
>gi|342186653|emb|CCC96140.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 280
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 122/252 (48%), Gaps = 34/252 (13%)
Query: 25 LRYFERH----LAESIRPDARSLSRARNTTI--SMGAVASADGSALAKIGSTTMLA-AIK 77
L +F++ L +S R D R+L R I G A S L + ++ ++
Sbjct: 12 LAFFQQRVHQFLVQSKRLDGRTLGALRVPQILRDCGGKGGALSSTLYTDNTGACVSCSVS 71
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
P + P+EG ++++ P S ++ + A VA + TI+S ++L E
Sbjct: 72 GLFGPPPPDQPEEGRLTVNVSAPFFQSHIMD--QVGTALREVAWFVQSTITSC--MDLTE 127
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
LS++ G+A W++ ++ L+ADG L AAL +AVAA N+ +P L +G +V
Sbjct: 128 LSIISGEACWVLQTELVVLNADGGLRAAALHAAVAAMQNMLLPRSRLPNGDMV------- 180
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLTCILHKN-----YILADPTSEEESIMETLVTVVLD 252
E R++ +P ++T ++K +L D + EES++E LVTVVL
Sbjct: 181 -----------ESRRIRFHTVPVAVTIGVYKASAADVRLLMDTNAAEESVVEGLVTVVLG 229
Query: 253 SSNQLVSLYKPG 264
S+ +V+L + G
Sbjct: 230 DSDGIVALTQNG 241
>gi|223972967|gb|ACN30671.1| unknown [Zea mays]
Length = 193
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 7/136 (5%)
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVML 192
I+L L +V GK W +Y+D + +DG L DA ++ A S+ IP V++
Sbjct: 28 IDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVS------- 80
Query: 193 PEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLD 252
+E E + ++E + G+P +T + + D TSEEES M + V+V ++
Sbjct: 81 VSAASDEEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVN 140
Query: 253 SSNQLVSLYKPGGAVL 268
Q+ L K GGA L
Sbjct: 141 RHGQICGLTKRGGAGL 156
>gi|67474914|ref|XP_653189.1| exosome complex exonuclease [Entamoeba histolytica HM-1:IMSS]
gi|56470120|gb|EAL47803.1| exosome complex exonuclease, putative [Entamoeba histolytica
HM-1:IMSS]
gi|407042424|gb|EKE41318.1| exosome complex exonuclease, putative [Entamoeba nuttalli P19]
gi|449703501|gb|EMD43942.1| exosome complex exonuclease, putative [Entamoeba histolytica KU27]
Length = 265
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 111/255 (43%), Gaps = 20/255 (7%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
+ + E L + IR DAR L R + V GS IG++ L +E + P
Sbjct: 1 MEHVEGLLQKGIRIDARRLDEFREVSF----VCREPGSVETHIGNSKALGECVVEPVCPG 56
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGK 144
PD+G +I + + +P R + K + + S+ I++ L ++ GK
Sbjct: 57 RSRPDQGIFNIRVNFLEMANPNFYDSRGPRDLIEIGKVVERGLLSTRAIDVDGLVIIRGK 116
Query: 145 AAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQKEENSEK 203
W + + ++ ++ G L D ++A++A V + + ++ PEE+K
Sbjct: 117 LVWKITVCVHIINDCGNLMDLVSITAISALLTAVRREVQICGTDVKILTPEERK------ 170
Query: 204 EPVNKEKRKLTLGGIPFSLTC-ILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
PV L + IP +++ I L DP+ EES+ ++ +T+ ++ ++ ++ K
Sbjct: 171 -PV-----PLAIHHIPITVSFGITESGVPLLDPSEREESVCKSHLTIAINKEGEVCAVQK 224
Query: 263 PGGAVLAYTSAVQDC 277
G + +Q C
Sbjct: 225 SGTPI--SMKVIQKC 237
>gi|149048738|gb|EDM01279.1| exosome component 9, isoform CRA_a [Rattus norvegicus]
Length = 353
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 99/197 (50%), Gaps = 14/197 (7%)
Query: 102 ICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGA 161
+ +P PGR ++ + + L + +S I+ + L +V G+ W + +D++ L+ DG
Sbjct: 1 MAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGN 60
Query: 162 LFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPF- 220
+ DAA ++A+ A + + P VS+ ++ + E E++PV L++ +P
Sbjct: 61 IIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE------ERDPV-----PLSIHHMPIC 109
Query: 221 -SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIA 279
S Y+L DP EE +M+ L+ + ++ ++ ++ GG +L V C
Sbjct: 110 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML-LKDQVFRCSK 168
Query: 280 LTRQRVKELHQILEEAI 296
+ +V E+ +++++A+
Sbjct: 169 IAGVKVAEITELIQKAL 185
>gi|440292961|gb|ELP86133.1| exosome complex exonuclease RRP42, putative [Entamoeba invadens
IP1]
Length = 265
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 106/241 (43%), Gaps = 18/241 (7%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
+ + + ++ ++R D RS+ + R + A+GS +G T ++ IK E+ P
Sbjct: 9 VEFIKEGVSVNVRTDGRSVLQFREFRCERDVIDQANGSVRFFLGRTEVVVGIKCELEEPQ 68
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQL-SDTISSSGMINLKELSLVGG 143
S +EG ++ LVR V +Q+ + ++ ++G LK+L + G
Sbjct: 69 ATSSNEGRYTV----------LVRKSGADNVRDVSIEQMITVSLENAGKEMLKKLCVSPG 118
Query: 144 KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEK 203
K W+VY+D ++ DG + D L+ AA + IP V++ G E Q + N +
Sbjct: 119 KLCWVVYVDAIVVEDDGNVMDCVSLAVRAALLSTLIPVVTVISGD---AEEVQIDINKD- 174
Query: 204 EPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
N + +P ++ +L + DP+ EE ++T + S + + K
Sbjct: 175 ---NVQFIHFEPSALPVCVSLVLLDEVYVVDPSHTEEMCSGGVLTTAVTESGLVCGIQKG 231
Query: 264 G 264
G
Sbjct: 232 G 232
>gi|148703132|gb|EDL35079.1| exosome component 9, isoform CRA_b [Mus musculus]
Length = 353
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 99/197 (50%), Gaps = 14/197 (7%)
Query: 102 ICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGA 161
+ +P PGR ++ + + L + +S I+ + L +V G+ W + +D++ L+ DG
Sbjct: 1 MAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGN 60
Query: 162 LFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPF- 220
+ DAA ++A+ A + + P VS+ ++ + E E++PV L++ +P
Sbjct: 61 IIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE------ERDPV-----PLSIHHMPIC 109
Query: 221 -SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIA 279
S Y+L DP EE +M+ L+ + ++ ++ ++ GG +L V C
Sbjct: 110 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML-LKDQVFRCSK 168
Query: 280 LTRQRVKELHQILEEAI 296
+ +V E+ +++++A+
Sbjct: 169 IAGVKVAEITELIQKAL 185
>gi|164660754|ref|XP_001731500.1| hypothetical protein MGL_1683 [Malassezia globosa CBS 7966]
gi|159105400|gb|EDP44286.1| hypothetical protein MGL_1683 [Malassezia globosa CBS 7966]
Length = 330
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/304 (20%), Positives = 132/304 (43%), Gaps = 50/304 (16%)
Query: 35 SIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVS 94
++RPD R ++R ++ + G ++G T +A+++ + P + P EG V
Sbjct: 25 ALRPDGRRFFQSRPVQVNF---SERLGWCQVQLGDTIAVASVEAALSEPRRDRPYEGLVQ 81
Query: 95 IDFHMPPICSPLVRPG------RPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWM 148
I + P+ G E A + + L + ++ ++ + L ++ GK W
Sbjct: 82 IHADISPMAGVEYDSGGMFGASESRERAALFERLLERAVRNTEAVDREALCVIAGKVVWC 141
Query: 149 VYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK----------- 197
V L ++ L GA DAA+L+++ A + P V++++G + + +++
Sbjct: 142 VSLTVHLLADQGASVDAAVLASMLALRQYRRPEVTVENGVVTVHSSDERVPVPLACHHVP 201
Query: 198 ----------EENSEKEPV------------NKEKRKLTLGGIPFSLTCILHKNYILADP 235
E +E+E +++ + + P + + L DP
Sbjct: 202 LCVSYAVFLLEPKTEQEHALLQAQSLAVTARQQQQLAMQVDDAPANAIAV---PVTLLDP 258
Query: 236 TSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTS--AVQDCIALTRQRVKELHQILE 293
+ E+++ + +T V+++ ++ L K GGA L + + A+ D A RV+EL +LE
Sbjct: 259 SLLEKTLAHSTITFVMNAQREICVLDKAGGASLPFQTILALLDSAA---ARVQELSTLLE 315
Query: 294 EAIS 297
++
Sbjct: 316 SKLA 319
>gi|298713749|emb|CBJ33722.1| 3'-5'-exoribonuclease/ RNA binding [Ectocarpus siliculosus]
Length = 174
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 1/154 (0%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
+ R L R D R L R + A A SA ++G T +L + EV+ P +
Sbjct: 16 FILRSLRGGRRADGRQLGDMRLLRMVF-ARAEGQASAEIQLGRTRVLGVVTGEVVPPFPD 74
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
P EG + + + P+ + V R + + +A+ + + S ++ + L ++GG+
Sbjct: 75 RPTEGFLHFNVELGPMAAASVGEQRNSPLSVEIARVIEIGVRDSQALDTEALCIIGGEKV 134
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP 180
W + D++ LD G L DA L+ +AA + + P
Sbjct: 135 WQLRCDVHILDHGGNLIDACTLATMAALRHFRRP 168
>gi|294877908|ref|XP_002768187.1| Exosome complex exonuclease RRP43, putative [Perkinsus marinus ATCC
50983]
gi|239870384|gb|EER00905.1| Exosome complex exonuclease RRP43, putative [Perkinsus marinus ATCC
50983]
Length = 291
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 103/238 (43%), Gaps = 19/238 (7%)
Query: 24 PLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTP 83
P + +HL +RPD R+ + IS S++G + +IG + + P
Sbjct: 11 PRGFLLKHLNAGVRPDGRADPPFSSRKIS---ATSSEGKSTVRIGENCATCVVHPLLGEP 67
Query: 84 SLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTIS-SSGMINLKELSLVG 142
P +G +++ +PP R + + + VA ++ + + + +L +V
Sbjct: 68 LSSMPRQGRLTVSVDLPPAADQSRRQAQ--QVSSWVATKVGSILQMGPEVFDPSQLCVVE 125
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
G+ W ++L I L DG+L D + +AV A ++Q+P + + L + + N
Sbjct: 126 GQVVWQLHLVITVLSVDGSLMDVCMRAAVEALQSVQLPALFAGEA----LSDRAADVNIA 181
Query: 203 KEPVNKEKRKLT------LGGIPFSLTCIL---HKNYILADPTSEEESIMETLVTVVL 251
R+LT +G IP S T L K ++L DPT+ EE V +V+
Sbjct: 182 SITTAPMGRELTQAHGVVMGSIPGSTTLALLSDDKTWLLPDPTASEEQACGGAVIIVV 239
>gi|302420353|ref|XP_003008007.1| exosome complex exonuclease RRP43 [Verticillium albo-atrum
VaMs.102]
gi|261353658|gb|EEY16086.1| exosome complex exonuclease RRP43 [Verticillium albo-atrum
VaMs.102]
Length = 340
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 120/293 (40%), Gaps = 67/293 (22%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVM--------TPSLESP 88
R + R+ AR I+ + A GSAL +IG T++ I+ E++ S+
Sbjct: 38 RSNGRAPHEARTPNINTSTLTHAHGSALVRIGDNTVICGIRGEILPTANIPNYRASIRDS 97
Query: 89 DEGCVS----IDFHMPPI-----CSPLVRPG-RPAEAAPVVAKQLSDTISSSGMINLKEL 138
D+G + D +P I +P PG P A ++ ++ + SSG++N +L
Sbjct: 98 DDGGRAELRDYDLLVPNIELATGSAPQFLPGVPPTNLAQTLSTRVFSLLHSSGLVNADDL 157
Query: 139 SLVGGKAA----------------------------WMVYLDIYCLDADGALFDAALLSA 170
+ + A W++Y+DIY + DG FDAA +
Sbjct: 158 RIWHTRPAENTGYSAADDEDDDMGELEAGERVVIAYWVLYIDIYFISFDGNPFDAAWAAM 217
Query: 171 VAAFSNLQIPTVSLD-DGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKN 229
+AA N ++P D D +IV+ E++ LTL G P + + + +
Sbjct: 218 LAALRNTKLPAARWDQDREIVVC-------------SRAEQKPLTLSGFPIATSAAVFQG 264
Query: 230 ------YILADPTSEEESI-METLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQ 275
+ L DP EE++ E L VV ++ + S P A Y+ A +
Sbjct: 265 KEPGRFWTLVDPDRLEETLCRENLTVVVTRTAARRSSSQCPSTAAQRYSRACR 317
>gi|225718446|gb|ACO15069.1| Exosome complex exonuclease RRP42 [Caligus clemensi]
Length = 250
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 111/240 (46%), Gaps = 24/240 (10%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+ E+IR D R R + + A+GSA ++ +T +L +K E+ P G
Sbjct: 18 VKENIRVDGRQRKDVRPMILETDIITHANGSARVQLSNTDVLVGVKAELCE---HKPGGG 74
Query: 92 CVSIDFHMPPICSPLVRP---GRPAE-AAPVVAKQLSDTISSSGMINLKELSLVGGKAAW 147
++F++ CS P GR E A +A LS + S + + N L++ + AW
Sbjct: 75 ---LEFYVD--CSANASPVFEGRGGEDLALEIASTLSSSYSDNKLFNRSILNVFQNRYAW 129
Query: 148 MVYLDIYCLDADGA-LFDAALLSAVAAFSNLQIPTVSL--DDGKIVMLPEEQKEENSEKE 204
++++D+ L+ +G LFD A + AA QIP V + DG + PE + E+ +
Sbjct: 130 ILHVDVLILEVEGGNLFDVASSAVKAALFATQIPKVHIVDVDGGV---PEIELSEDPD-- 184
Query: 205 PVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
E +L + P +T ++ +AD + EE+ + + + S ++ SL K G
Sbjct: 185 ----ECFRLDVSNAPVLVTLNRIGHFCIADASPNEEACSSAAMVIAVSPSGRISSLRKIG 240
>gi|407411255|gb|EKF33402.1| exosome-associated protein 2, putative,3' exoribonuclease, putative
[Trypanosoma cruzi marinkellei]
Length = 278
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 30/188 (15%)
Query: 83 PSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSS--GMINLKELSL 140
P + P+EG +++D P PG A +L+ + S+ ++L +L +
Sbjct: 80 PPSQHPEEGRLTVDVTAP------FFPGYSAFQIEGTLHELARFVRSTIISCLDLTKLCV 133
Query: 141 VGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEEN 200
+ G+A W++ +++ ++ADG L A L + VAA NL +P L G +V
Sbjct: 134 ISGEACWVLRVELIVMNADGGLRAATLHATVAALHNLTLPKARLPSGDVV---------- 183
Query: 201 SEKEPVNKEKRKLTLGGIPFSLTCILHKN----YILADPTSEEESIMETLVTVVLDSSNQ 256
E R L IP + T + L D + EES+ + L+TVV+D ++
Sbjct: 184 --------ESRCLCFHRIPVAATIGVCGTAGSMQFLLDTNAAEESVADVLLTVVIDETDG 235
Query: 257 LVSLYKPG 264
+VS G
Sbjct: 236 IVSFVHHG 243
>gi|167392472|ref|XP_001740171.1| exosome complex exonuclease RRP45 [Entamoeba dispar SAW760]
gi|165895849|gb|EDR23438.1| exosome complex exonuclease RRP45, putative [Entamoeba dispar
SAW760]
Length = 244
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 112/255 (43%), Gaps = 20/255 (7%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
+ + E L + IR DAR L R + V GS IG++ L +E ++P
Sbjct: 1 MEHVEGLLQKGIRIDARKLDEFREVSF----VCREPGSVETHIGNSKALGECVVEPVSPG 56
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGK 144
PD+G +I + + +P R + K + + S+ I++ L ++ GK
Sbjct: 57 RSRPDQGIFNIRVNFLEMANPNFYDSRGPRDLIEIGKVVERGLLSTRAIDVDGLVIIRGK 116
Query: 145 AAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI-VMLPEEQKEENSEK 203
W + + ++ ++ G L D ++A++A V + + ++ PEE+K
Sbjct: 117 LVWKITVCVHIINDCGNLMDLVSITAISALLTAVRREVQICGTDVKILTPEERK------ 170
Query: 204 EPVNKEKRKLTLGGIPFSLTC-ILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
PV L + IP +++ I L DP+ EES+ ++ +T+ ++ ++ ++ K
Sbjct: 171 -PV-----PLAIHHIPITVSFGITDSGVPLLDPSEREESVCKSRLTIAINKEGEVCAVQK 224
Query: 263 PGGAVLAYTSAVQDC 277
G + +Q C
Sbjct: 225 SGTPI--SMKVIQRC 237
>gi|32566065|ref|NP_508024.2| Protein EXOS-7 [Caenorhabditis elegans]
gi|24817316|emb|CAB07377.2| Protein EXOS-7 [Caenorhabditis elegans]
Length = 312
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 125/287 (43%), Gaps = 23/287 (8%)
Query: 35 SIRPDARSLSRARNTTISMGAVASADGSALAKIGSTT-MLAAIKMEVMTPSLESPDEGCV 93
+IR D RS R + G ++ +GS ++G TT +LA IK+E+ + E+ E
Sbjct: 20 NIRNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKLELESYDAETEKEPKQ 79
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSG------MINLKELSLVGGKAAW 147
I+F++ S + A++LS ++ M NL + L G W
Sbjct: 80 PINFNVD--FSANASSQFAGKGGDEYAEELSAAFQAAYSKALDIMPNLAKTQLADG-YRW 136
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDGKIV--MLPEEQKEENSEK 203
+ +DI L DG++ DA ++ + A S+L+ P V+ DDG V +L + N
Sbjct: 137 KINVDISVLQWDGSVSDAISIAIIGALSDLEFPEGDVAPDDGGKVRIVLKRPKVAGNVRD 196
Query: 204 EPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVL----DSS----- 254
E V KL + P LT L D T EEE + + + V L DSS
Sbjct: 197 ENVQVAMWKLDVMRCPLLLTISKIGTANLVDCTPEEECCIRSQLLVGLAAIADSSENNEP 256
Query: 255 NQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEI 301
N V+ K G L ++Q+ + L + V L+ L + + E+
Sbjct: 257 NYDVTCVKQVGGGLLEMESIQEMLELAAKSVGGLYGALAKRLKNEEM 303
>gi|414879372|tpg|DAA56503.1| TPA: hypothetical protein ZEAMMB73_591171 [Zea mays]
Length = 545
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 75/143 (52%), Gaps = 14/143 (9%)
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDG 187
S ++++ L + GK W V +D++ LD G DAA ++A+AA S P TV D+G
Sbjct: 71 SRAVDMEFLCVFAGKHVWSVRVDLHILDNGGNPIDAANITALAALSTFWRPECTVGGDNG 130
Query: 188 KIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL--HKNYILADPTSEEESIMET 245
+ V + +P ++ LT+ +P ++T N ++ DPT +EE++M
Sbjct: 131 QQVTV----------HDPEVRDPLPLTIHHMPIAVTFAYFGEGNIVVLDPTYKEEAVMGE 180
Query: 246 LVTVVLDSSNQLVSLYKPGGAVL 268
+T +++S+ + ++ K GG L
Sbjct: 181 RMTAIVNSNGDVCAIQKAGGEGL 203
>gi|123508639|ref|XP_001329682.1| nucleolar autoantigen-like protein [Trichomonas vaginalis G3]
gi|121912729|gb|EAY17547.1| nucleolar autoantigen-like protein, putative [Trichomonas vaginalis
G3]
Length = 315
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 107/267 (40%), Gaps = 42/267 (15%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTM-LAAIKMEVMTP 83
+R L+ +RPD R + R T+ +DG+A+ K+GST + IK +V+
Sbjct: 14 IRSTREMLSNGLRPDGRDPNEPRRLTVDF-----SDGAAIVKLGSTIVSCRVIKNQVLAD 68
Query: 84 SLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGG 143
P++G SI R AE V D + ++L+ L + G
Sbjct: 69 E-NHPNQGFFSIGLSSTHKIDSYFR----AETLNAV----RDMFKMNNALDLESLVIQIG 119
Query: 144 KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEK 203
K W + +I L+ DG LF+A L+ ++P+ D
Sbjct: 120 KLVWELKCEIVILENDGGLFEAMTLAVGCGLLATKLPSTRGD------------------ 161
Query: 204 EPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
R LTL +P +T ++ + DPT E + +T+ ++ ++ S+ K
Sbjct: 162 -------RSLTLHHLPIPITFALIDQRTRFVDPTVLEALACDGFLTICANAQGEICSIRK 214
Query: 263 PGGAVLAYTSAVQDCIALTRQRVKELH 289
GG L T + +CI + K+ H
Sbjct: 215 NGGVTLPST-VMDNCIDIAVDLSKKWH 240
>gi|428164594|gb|EKX33614.1| hypothetical protein GUITHDRAFT_147790 [Guillardia theta CCMP2712]
Length = 298
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 35/234 (14%)
Query: 69 STTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTIS 128
ST +L + ++ P E P EG VS+D P+ R +E L I
Sbjct: 45 STRVLGVVSAALVVPPAERPAEGIVSLDLLPLPLADSSTDANRASETMKDGRAILQRAIV 104
Query: 129 SSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGK 188
S ++++ L ++ GKA W V +++ L+ G + D L+AV + ++ ++ V +D K
Sbjct: 105 KSRCVDVESLCVIAGKAVWKVTVELKVLENGGNVTDCCSLAAVLSLNHFKLNEVIVDGDK 164
Query: 189 IVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVT 248
+ + ++ I+ADP+ EE +M +
Sbjct: 165 VKVFAYSER--------------------------------VIIADPSKLEEQVMHGQLV 192
Query: 249 VVLDSSNQ--LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
++ S ++ L + K GGA L S +Q C + R ELH++ +EA+ E
Sbjct: 193 IIAGSKDRSMLYGISKTGGAPLP-PSQLQRCCEMAIDRAAELHEVCKEALRKNE 245
>gi|336464418|gb|EGO52658.1| hypothetical protein NEUTE1DRAFT_72508 [Neurospora tetrasperma FGSC
2508]
Length = 357
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/329 (22%), Positives = 128/329 (38%), Gaps = 89/329 (27%)
Query: 19 FRRLFPLRYFERHLAES---IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAA 75
F +L P Y +L + R + R+ AR I ++A A+GSAL + G TT++
Sbjct: 17 FAKLSPHPYLLTNLTDPENPCRTNGRAPHEARPVHIHTSSLAHANGSALVRTGDTTVVCG 76
Query: 76 IKMEVMTPSLESPD-------------------EGCVSIDFHMPPI-----CSPLVRPGR 111
++ E++ P P + D +P I C+P PG
Sbjct: 77 VRAEIL-PVTNIPQYRPRELSYGEEDNDDSADVDELKDYDLLVPNIELATGCAPQFLPGV 135
Query: 112 PAEA-APVVAKQLSDTISSSGMINLKELSLVGG--------------------------- 143
P A ++ ++ + S +++ K L +
Sbjct: 136 PPTTLAQTLSTRIYSLLHSCKVVDPKGLRVWYTPPKETREEGAMEVDEAQEEEEEEEERK 195
Query: 144 ---KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEEN 200
KA W++Y+D+ + DG FDAA + +AA + ++P D + ++ +E
Sbjct: 196 PELKAYWVLYIDLLFVSFDGNPFDAAWTAVMAALRDTKLPQARWDPDREAVVCSRSEE-- 253
Query: 201 SEKEPVNKEKRKLTLGGIPFSLTCILH-----------------KNYILADPTSEEESIM 243
K L + G+P + T + +++IL DP EES+
Sbjct: 254 --------AKMALGVRGLPVACTATVFLEKEHGEDSGTSAERKSRHWILLDPDRLEESLC 305
Query: 244 ETLVTVVLDSSNQ---LVSLYKPGGAVLA 269
+ VTVV+D S + + S+ K GG V+
Sbjct: 306 KETVTVVVDCSGEETKVKSIEKHGGTVIG 334
>gi|330926139|ref|XP_003301342.1| hypothetical protein PTT_12814 [Pyrenophora teres f. teres 0-1]
gi|311324033|gb|EFQ90557.1| hypothetical protein PTT_12814 [Pyrenophora teres f. teres 0-1]
Length = 347
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 122/289 (42%), Gaps = 65/289 (22%)
Query: 19 FRRLFPLRYFERHL-AESIRP---DARSLSRARNTTISMGAVASADGSALAKIGSTTMLA 74
F + P + + HL AE RP + R+ + R I+ G++ +GSA+ ++G+T+++
Sbjct: 18 FAAVSPHPFLQAHLSAEKKRPVRANGRTSNEYRTPGINTGSLTHCNGSAVVRLGNTSVVC 77
Query: 75 AIKMEVMTP-----SLESPDEGCV--------------SIDFHMPPI-----CSPLVRPG 110
++ E++ + E P E + +P + +P PG
Sbjct: 78 GVRAEILKEADIPGTYEYPGETAGQESEQEENDGEEIEGLRLLVPNVELSTGSTPSHIPG 137
Query: 111 R-PAEAAPVVAKQLSDTISSSGMINLKELSLVGG----------------KAAWMVYLDI 153
P+ A + ++ + S+ ++ L ++ K W++YLD+
Sbjct: 138 NAPSTYAQTLITRIRSLLHSTRLLRASNLRILHKPSANPEDPDTEAETRLKGYWVLYLDV 197
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKL 213
+ + DG FDAA +S +AA + +P D EE + +P KE +L
Sbjct: 198 FFISIDGNAFDAAWISILAALRDTLLPHAYFD--------EEYEGILCSDDP--KEAHRL 247
Query: 214 TLGGIPFSLTCILHK----------NYILADPTSEEESIMETLVTVVLD 252
L G+P T + + +++L+DP + EE + V VV+D
Sbjct: 248 ALRGLPIPSTYAVFEGRREDEDEEVDWVLSDPDAFEEGVCRETVAVVVD 296
>gi|391333945|ref|XP_003741370.1| PREDICTED: exosome complex component RRP43-like [Metaseiulus
occidentalis]
Length = 258
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 119/259 (45%), Gaps = 23/259 (8%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R+ R IS G++ +ADGS+L ++G T ++ ++ E+ L + G S +
Sbjct: 21 RKDGRAFDSHRAIEISKGSIGTADGSSLVRLGDTCVVCGLRGEIAEIQL--GESGVPSAN 78
Query: 97 FHMPPICSPLVRPG--RPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIY 154
+ + P G P+E +++ L + + S+ + S + + W++++ I
Sbjct: 79 IGV-EVKLPFKNIGYSNPSEEEQALSQTLQNILMSAEAF---QPSPISDRFFWVLHVTIT 134
Query: 155 CLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLT 214
CL DG L A+L + A S+L++P D ++ ++ + +P+
Sbjct: 135 CLAYDGNLTGASLAAISGALSSLKLPGAHHDLELDILQVDDNYQNVKCTQPI-------- 186
Query: 215 LGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAV 274
G+ F + + ++ D ++EE + VV+D + +V L+K GG + +
Sbjct: 187 --GVGFGII----NDELVVDMSNEETLLSNGESMVVIDEDDSVVHLHKGGGTSVD-PKQL 239
Query: 275 QDCIALTRQRVKELHQILE 293
Q I ++ +EL + L+
Sbjct: 240 QSMIQDAKKHSQELRKYLK 258
>gi|308809605|ref|XP_003082112.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 (ISS)
[Ostreococcus tauri]
gi|116060579|emb|CAL55915.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 (ISS)
[Ostreococcus tauri]
Length = 314
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 111/267 (41%), Gaps = 25/267 (9%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMT-PSL 85
Y +A+ R D R + R +++G V +A+GS +G T+ +AA++ +V +
Sbjct: 7 YARDGVADDCREDGRGRATRRALRMAIGVVPNANGSCAVTLGETSCVAAVRCDVTAIEAW 66
Query: 86 ESPDEGCVSIDFHMPPICSPL-----------------VRPGRPAEAAPVVAKQLSDTIS 128
E+ D G + + I + V GR + + +
Sbjct: 67 EASDVGAIVLRVDASSIATTRAGRAAAVGETLRRRLESVVAGRERGVSDASGRASGSGVD 126
Query: 129 S--SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD 186
+ G I+L+ L + G+A W + +D C G++ DA ++ A ++ +IP VSL
Sbjct: 127 AWDGGGIDLRSLCVRPGRARWTLAVDAVCACDRGSMLDALSVAVRGALADTKIPKVSL-- 184
Query: 187 GKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETL 246
V E E + +P + ++ G+ + T I + D T EEE+ E
Sbjct: 185 -VGVGSDGEGGELEIDDDPDACTRVDVSRCGVVATTTKIGKHGVV--DATDEEEACAEAS 241
Query: 247 VTVVLDSSNQLVSLYKPGGAVLAYTSA 273
++V +D + + GG L +A
Sbjct: 242 MSVGVDRDGMVCGEFTTGGETLDRGTA 268
>gi|340975836|gb|EGS22951.1| exoribonuclease-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 357
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 128/302 (42%), Gaps = 81/302 (26%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVM----TPSLESPDEGC 92
R + R + AR +++G+++ A GSAL + G TT+L ++ EV+ P PD
Sbjct: 45 RTNGRRPNEARPFRVNLGSLSHAHGSALVRAGDTTVLCGVRGEVLPVERIPLFRQPDVNG 104
Query: 93 VSI------------DFHMPPI-----CSPLVRPGRPAEA-APVVAKQLSDTISSSGMIN 134
I D +P I +P PG P A A ++ ++ + S+ +++
Sbjct: 105 SGIGATVGRGELKEYDLLVPNIELATGSAPQFLPGVPPTALAQTLSTRVYSLLHSTRLVS 164
Query: 135 LKELSLVGGKAA------------------------------WMVYLDIYCLDADGALFD 164
+EL + A W++Y+D+ L DG FD
Sbjct: 165 AEELRIWYRPVATNRSKEGEDVEMEEECQEESGEEQDRVVAYWVLYIDLVFLSFDGNPFD 224
Query: 165 AALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTC 224
A + VAA + ++P D P+ + S+ E + KLT+ G+P + +
Sbjct: 225 VAWAAVVAALRDTKLPVARWD-------PDREMVVCSKTETM-----KLTIKGLPIACSA 272
Query: 225 IL--------------HKNYILADPTSEEESIMETLVTVVLDSSN---QLVSLYKPGGAV 267
+ ++++IL DP EES+ + ++T+V+D S+ ++ ++ K GG V
Sbjct: 273 AVFLEKEHGEVAVGEKNRHWILLDPDRLEESLCKEVITMVVDFSDGETRIRAIEKQGGTV 332
Query: 268 LA 269
Sbjct: 333 FG 334
>gi|340505571|gb|EGR31888.1| hypothetical protein IMG5_100370 [Ichthyophthirius multifiliis]
Length = 355
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 105/257 (40%), Gaps = 34/257 (13%)
Query: 30 RHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPD 89
+ L + +R D R+L +R + G G G T + + P E P+
Sbjct: 14 KSLEQELRLDGRTLLNSRKIEVHFGL---NPGEIELISGDTHIATKTHSSITDPKKEKPN 70
Query: 90 EGCVSIDFHMPPICSPLVRPGRP-AEAAPVVAKQLSDTISSSGM--------------IN 134
EG + + + + E + + K L I S I+
Sbjct: 71 EGFLFFKVDLSSTQDEQQQNLQNFKEYSNEIQKLLEKIIKGSKQFFQFKTKQKIYKRAID 130
Query: 135 LKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD-GKIVMLP 193
+ L ++ GK W + ++ + G L D L + + + + P +S++ KI + P
Sbjct: 131 VASLCIITGKKVWNITVETSVISNGGNLIDNIYLCVMISLLHFRKPYISIEQQSKIKIHP 190
Query: 194 EEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIMETLVTVVL 251
+ K + L++ +P T L KN ++ADP ++EE +ME +T+ +
Sbjct: 191 D-------------KNPQPLSIHHMPIPFTFALFKNATLLVADPLAQEEQLMEGRITISV 237
Query: 252 DSSNQLVSLYKPGGAVL 268
+ N + +++KPGGA L
Sbjct: 238 NIYNDICNIHKPGGAPL 254
>gi|219124479|ref|XP_002182530.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405876|gb|EEC45817.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 764
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 16/230 (6%)
Query: 29 ERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESP 88
E RPD R + R T I G + +A GS+L K+G+T +LAA+ +V P +
Sbjct: 41 ENFYQNGTRPDGRLFHQTRQTNIQRGILNNACGSSLIKLGTTQVLAAVTYQVGQPIVSGS 100
Query: 89 DEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWM 148
G +V V+ L + + I+L++LS+V +AA+
Sbjct: 101 SGGSGDDSNKTK---GDIVIAADNGSVDAVLQSWLQRLLQDT--IDLEQLSIV-PQAAFR 154
Query: 149 VYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNK 208
+ + + L+ G L DA L+ VAA + ++P+ ++ + V L ++N + N
Sbjct: 155 LIVTVQVLNVAGNLRDACWLACVAALLDTKLPSNTVYEAGKVWL-----KDNDDTADANT 209
Query: 209 EKRKLTLGGIPFSLTCILHKN-----YILADPTSEEESIMETLVTVVLDS 253
+ L L +P SLT + + DPT EEE + +T+++++
Sbjct: 210 GTKSLELPVLPISLTMGVWSTIEAGMVHMVDPTIEEEESLSGSLTIIVNA 259
>gi|342320414|gb|EGU12354.1| Hypothetical Protein RTG_01376 [Rhodotorula glutinis ATCC 204091]
Length = 1080
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 126/290 (43%), Gaps = 40/290 (13%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + +R D R + R + G G ++G T ++A + E++ P + P EG
Sbjct: 19 LRKGLRLDGRGMYEMRAVEVRFG---EEFGWVECRLGGTRVVAQVSAEIVKPLPDRPYEG 75
Query: 92 CVSIDFHMPPICSPLVRPGR-----------------------PAEAAPVVAKQLSDTIS 128
V++ + P+ S GR +E ++ + L +
Sbjct: 76 FVNLVTEISPMASAAYEAGRLRGGACACDGVSKRELTSTTARRASEDEVLMTRLLEKALR 135
Query: 129 SSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGK 188
S ++ + L +V G+ W + +D++ LD +G L D A ++A+ A + + P V+
Sbjct: 136 RSNTVDREALCIVAGQKVWSIRVDVHFLDDEGNLLDCASIAAMTALRHFRKPDVT----- 190
Query: 189 IVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILA--DPTSEEESIMETL 246
V+ E +E+ PV L + P LT + LA DP+ E +
Sbjct: 191 -VVGEEVTVHSMTERVPV-----PLAIHHSPMCLTFAFFGDDSLAVLDPSHLESQLCTGT 244
Query: 247 VTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
+T+ L+S +++ L K GGA L ++ +++ +RV+E+ + +A+
Sbjct: 245 LTLALNSQSEICVLSKQGGAPLGADEVIR-AVSIGVERVREVEGRVVQAL 293
>gi|157874377|ref|XP_001685672.1| putative exosome-associated protein 2 [Leishmania major strain
Friedlin]
gi|68128744|emb|CAJ08877.1| putative exosome-associated protein 2 [Leishmania major strain
Friedlin]
Length = 312
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 23/149 (15%)
Query: 121 KQLSDTISS--SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQ 178
+QL I + G +L +LS+ G+A W++ + + L DG L +L +A+AA L
Sbjct: 153 RQLEGYIGTVLDGCFDLSQLSIYAGEACWVLKVSVLLLSVDGGLRAGSLHAALAALHKLH 212
Query: 179 IPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL---HKNYILADP 235
+P + L +G ++ E R++ L +P + T + ++AD
Sbjct: 213 LPRIRLPNGDVI------------------EGRQVQLSCMPVACTFGFLAGAQVRLVADT 254
Query: 236 TSEEESIMETLVTVVLDSSNQLVSLYKPG 264
T+ EE + + L+TVV+D + +++S++ G
Sbjct: 255 TAIEEHVADGLITVVVDEAERILSVHHTG 283
>gi|344302579|gb|EGW32853.1| hypothetical protein SPAPADRAFT_136976 [Spathaspora passalidarum
NRRL Y-27907]
Length = 304
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 123/302 (40%), Gaps = 48/302 (15%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
+S +E+ +R F L L R R R+ IS+ + G G
Sbjct: 1 MSRSIEISENQRKFLLE----SLKHGFRLTDRPFDHVRD--ISLYLSPTEYGYVEVSWGK 54
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T + + V TP + P EG +I+ + + S R E ++A+ + +
Sbjct: 55 TKLACRVTATVTTPYEDRPFEGIFTINSEISTMASMRFDTSRSNEEI-LIARIIEKAVRR 113
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189
S ++L+ L ++ G+ W + +D+ L+ DG D + + A + + P +S++ I
Sbjct: 114 SNSLDLESLCIIAGEKVWEITVDLNYLNYDGNFIDVGCFAVMLALHHFKKPDISINGNSI 173
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESI------- 242
V+ + +E++PV L++ IP LT Y + T +E +I
Sbjct: 174 VV------HDINERQPV-----PLSILHIPICLT------YSFYNLTDKESNIKGEDADE 216
Query: 243 -------------METLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELH 289
+ + + L+ + +L+ L K GG + + Q + LT + +K +
Sbjct: 217 ICLLDADLLEELNRDGSLVITLNKNRELIQLSKNGGLPI----SAQQFLELTFKSMKTID 272
Query: 290 QI 291
Q+
Sbjct: 273 QL 274
>gi|225709084|gb|ACO10388.1| Exosome complex exonuclease RRP42 [Caligus rogercresseyi]
Length = 288
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 118/261 (45%), Gaps = 26/261 (9%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ + E +R D R R + + A+GSA ++ +T +L +K E+
Sbjct: 12 RFILDGIKEDLRVDGRQRKDVRPMILETDVITHANGSARIRLANTDVLVGVKAELCE--- 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSS----GMINLKELSLV 141
+ P ++F++ CS P +A ++S T++SS + + L +
Sbjct: 69 DRPG----GLEFYVD--CSANASPEFEGRGGEDLALEISSTLASSYSDPRVFDPSVLHVF 122
Query: 142 GGKAAWMVYLDIYCLDADGA-LFDAALLSAVAAFSNLQIPTVSL--DDGKIVMLPEEQKE 198
+ AW++++D+ L+ +G LFD + L+ +A Q+P V + DG + PE +
Sbjct: 123 KNRYAWVLHVDVLILEVEGGNLFDVSSLAVKSALFCTQVPRVHIVDVDGGV---PEIELS 179
Query: 199 ENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLV 258
E+ E E +L + G P ++ ++++ D + EE+ + V + S ++
Sbjct: 180 EDPE------ECFRLNVSGAPVLVSLNRVGHFVIVDASPHEEACSSAAIVVAVTPSGRIS 233
Query: 259 SLYKPGGAVLAYTSAVQDCIA 279
SL K G + ++D +A
Sbjct: 234 SLRKVGSGSF-HIDTLEDALA 253
>gi|241122574|ref|XP_002403584.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp43, putative
[Ixodes scapularis]
gi|215493474|gb|EEC03115.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp43, putative
[Ixodes scapularis]
Length = 195
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 20/205 (9%)
Query: 96 DFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE---LSLVGGKAAWMVYLD 152
+ +PP+CSP+ +PG P A V++ + D +S+S + K+ SL+ W V L
Sbjct: 3 NVDLPPLCSPMFKPGPPGPQAQVLSTMMLDVLSNSQCLKPKKEKKPSLLA--RCWPVILR 60
Query: 153 IYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRK 212
Y F L V + VS +GK+ +L + +E
Sbjct: 61 CYFYFFQALFFFLGLQICVCSLCVASCNRVSTAEGKVDVL-------------LEREAVG 107
Query: 213 LTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTS 272
++ G + S +L + ++ADPT EEE + + TVVL + + L +++KPGG+ L+
Sbjct: 108 VSPGPLAASFA-VLADDVVVADPTHEEECLAQETFTVVLAADDTLCTVHKPGGSFLS-PE 165
Query: 273 AVQDCIALTRQRVKELHQILEEAIS 297
+ D + ++ VK+ +L A++
Sbjct: 166 QMSDHLEQAQRLVKDSRTLLNTALA 190
>gi|497643|gb|AAA18832.1| PM-Scl-75 autoantigen [Homo sapiens]
Length = 372
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 99/197 (50%), Gaps = 14/197 (7%)
Query: 102 ICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGA 161
+ +P PGR ++ + + + + +S I+ + L +V G+ W + +D++ L+ DG
Sbjct: 1 MAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGN 60
Query: 162 LFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPF- 220
+ DAA ++A+ A + + P VS+ ++ + E E++PV L++ +P
Sbjct: 61 IIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDPV-----PLSIHHMPIC 109
Query: 221 -SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIA 279
S Y+L DP EE +M+ L+ + ++ ++ ++ GG +L ++ C
Sbjct: 110 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVLR-CSK 168
Query: 280 LTRQRVKELHQILEEAI 296
+ +V E+ +++ +A+
Sbjct: 169 IAGVKVAEITELILKAL 185
>gi|179287|gb|AAA58384.1| autoantigen [Homo sapiens]
gi|63992811|gb|AAY40968.1| unknown [Homo sapiens]
Length = 355
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 99/197 (50%), Gaps = 14/197 (7%)
Query: 102 ICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGA 161
+ +P PGR ++ + + + + +S I+ + L +V G+ W + +D++ L+ DG
Sbjct: 1 MAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGN 60
Query: 162 LFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPF- 220
+ DAA ++A+ A + + P VS+ ++ + E E++PV L++ +P
Sbjct: 61 IIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDPV-----PLSIHHMPIC 109
Query: 221 -SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIA 279
S Y+L DP EE +M+ L+ + ++ ++ ++ GG +L ++ C
Sbjct: 110 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVLR-CSK 168
Query: 280 LTRQRVKELHQILEEAI 296
+ +V E+ +++ +A+
Sbjct: 169 IAGVKVAEITELILKAL 185
>gi|261335755|emb|CBH18749.1| exosome-associated protein 2, putative [Trypanosoma brucei
gambiense DAL972]
Length = 294
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 115/253 (45%), Gaps = 36/253 (14%)
Query: 25 LRYFERH----LAESIRPDARSLSRARNTTISMGAVASADG---SALAKIGSTTMLAAIK 77
L F++H L ++ R D R L R I + DG S L + T L
Sbjct: 12 LASFQQHVHQFLVQNKRLDGRPLDALREPHI-LRDSKGGDGLLASTLYTDNTGTCLNCTV 70
Query: 78 MEVMTPS-LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLK 136
V P + PDEG +++D P S + A A VA+ + TI S ++L
Sbjct: 71 SGVFGPPPSDQPDEGRLTVDVAAPFFQSH--STDQVAAALREVARFVRSTIISC--MDLT 126
Query: 137 ELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQ 196
EL+++ G+A W++ +++ L+ADG L AAL + VAA N+ +P L G V
Sbjct: 127 ELNIINGEACWVLQVELVILNADGGLRAAALHAVVAAIHNMLLPRSRLPSGDEV------ 180
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLTCILHK-----NYILADPTSEEESIMETLVTVVL 251
E R+L IP ++T ++K L D + EES+++ L+TVVL
Sbjct: 181 ------------ESRRLRFHTIPVAVTIGVYKLGASGVRFLMDTNAAEESVVDGLLTVVL 228
Query: 252 DSSNQLVSLYKPG 264
N +++ + G
Sbjct: 229 SDENGIITFVQSG 241
>gi|74026302|ref|XP_829717.1| exosome-associated protein 2 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|22797842|emb|CAD23610.1| exosome-associated protein 2 [Trypanosoma brucei]
gi|70835103|gb|EAN80605.1| exosome-associated protein 2 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 294
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 27/187 (14%)
Query: 83 PSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVG 142
P + PDEG +++D P S + A A VA+ + TI S ++L EL+++
Sbjct: 77 PPSDQPDEGRLTVDVAAPFFQSH--STDQVAAALREVARFVRSTIISC--MDLTELNIIN 132
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
G+A W++ +++ L+ADG L AAL + VAA N+ +P L +G V
Sbjct: 133 GEACWVLQVELVILNADGGLRAAALHAVVAAIHNMLLPRSRLPNGDEV------------ 180
Query: 203 KEPVNKEKRKLTLGGIPFSLTCILHK-----NYILADPTSEEESIMETLVTVVLDSSNQL 257
E R+L IP ++T ++K L D + EES+++ L+TVVL N +
Sbjct: 181 ------ESRRLRFHTIPVAVTIGVYKLGASGVRFLMDTNAAEESVVDGLLTVVLSDENGI 234
Query: 258 VSLYKPG 264
++ + G
Sbjct: 235 ITFVQSG 241
>gi|225718102|gb|ACO14897.1| Exosome complex exonuclease RRP42 [Caligus clemensi]
Length = 289
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 111/240 (46%), Gaps = 24/240 (10%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
+ E+IR D R R + + A+GSA ++ +T +L +K E+ P G
Sbjct: 18 IKENIRVDGRQRKDVRPMILETDIITHANGSARVQLSNTDVLVGVKAELCE---HKPGGG 74
Query: 92 CVSIDFHMPPICSPLVRP---GRPAEA-APVVAKQLSDTISSSGMINLKELSLVGGKAAW 147
++F++ CS P GR E A +A S + S + + N L+++ + AW
Sbjct: 75 ---LEFYVD--CSANASPVFEGRGGEDLALEIASTPSSSYSDNKLFNRSILNVLQNRYAW 129
Query: 148 MVYLDIYCLDADGA-LFDAALLSAVAAFSNLQIPTVSL--DDGKIVMLPEEQKEENSEKE 204
++++D+ L+ +G LFD A + AA QIP V + DG + PE + E+ +
Sbjct: 130 ILHVDVLILEVEGGNLFDVASSAVKAALFATQIPKVHIVDVDGGV---PEIELSEDPD-- 184
Query: 205 PVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
E +L + P +T ++ +AD + EE+ + + + S ++ SL K G
Sbjct: 185 ----ECFRLDVSNAPVLVTLNRIGHFCIADASPNEEACSSAAMVIAVSPSGRISSLRKIG 240
>gi|401404095|ref|XP_003881647.1| conserved hypothetical protein [Neospora caninum Liverpool]
gi|325116060|emb|CBZ51614.1| conserved hypothetical protein [Neospora caninum Liverpool]
Length = 368
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 128/325 (39%), Gaps = 76/325 (23%)
Query: 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTML 73
M+ DAFR + P + R L +R D RS R IS + + GSA + G+ L
Sbjct: 1 MDCDAFRTVLPAEFHRRFLINKVRADGRSFLTYRQPLISSNTLTNCCGSASVRAGNNYYL 60
Query: 74 AAIKMEVMTPS-------------------LESPDE-----------GCVSIDFHMPPIC 103
A +K EV P LES + G + P IC
Sbjct: 61 AGVKCEVGPPVAKGCTVGNIQPQKSACAELLESQRQLQAEASSSLAAGRIVASVEFPSIC 120
Query: 104 -SPLVRPGRPAEAAP-VVAKQLSDTISSSGMINLKELSLVGGKA---------------- 145
+ G P AP +++ ++D ++S+ +I+ +L L A
Sbjct: 121 GADFSDGGGPNANAPLLISGVVTDLLNSNSVIDTCQLCLRTEGAERGEIDENDLRDDENS 180
Query: 146 ------------------AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD-- 185
AW +++ + CL+ DG D ALL+AVAA N +P +S D
Sbjct: 181 PHPSSEFGRTEANLEQTFAWHLHVHVVCLEYDGNPLDFALLAAVAALENTVLPAISWDAK 240
Query: 186 -DGKIVMLPEEQKEE-----NSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSE 238
+LP E + + ++E V E+ K+ + P S+T + + + DP+ E
Sbjct: 241 AKWWRQLLPAENRPDFPGAASAEGLSVFNEE-KVVVSNRPLSVTFSHVMNQWWVVDPSRE 299
Query: 239 EESIMETLVTVVLDSSNQLVSLYKP 263
EE + L V L + ++ L P
Sbjct: 300 EEKLGCGLSVVFLKNRWHVLRLGGP 324
>gi|71004918|ref|XP_757125.1| hypothetical protein UM00978.1 [Ustilago maydis 521]
gi|46096381|gb|EAK81614.1| hypothetical protein UM00978.1 [Ustilago maydis 521]
Length = 327
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 127/310 (40%), Gaps = 58/310 (18%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L++ +RPD RS R+ IS G G+ I T + ++ +M P + P EG
Sbjct: 21 LSDGVRPDGRSFLSTRDVDISFGEEL---GNCTVAIKGTRVSTCVRATLMPPRSDRPYEG 77
Query: 92 CVSIDFHMPPIC-----SPLVRPGRPAEAAPVVAKQLSD-TISSSGMINLKELSLVGGKA 145
+ I + P+ S A A V+ +L D + + ++ + L +V G+
Sbjct: 78 FLQITTDISPMAGIEYDSTGGGANSSARAREVLFDRLIDKAVRRTEAVDREALCVVAGEQ 137
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W V+L ++ L GA DAA+L ++ + + + P S+++G V L E+ P
Sbjct: 138 VWNVHLTVHLLSDTGAALDAAVLCSMLSLRHFRRPDYSIENGNQVRL-----YSLDERVP 192
Query: 206 VNKEKRKLTLGGIPFSLTCILHKNY----------------------------------- 230
V L + P +T + +
Sbjct: 193 V-----PLAIHHTPLCVTFAIFNHLPSISTAASKTQPEDRADSHLIDPNAKASSPDTSTS 247
Query: 231 ---ILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKE 287
L DPT EES+ ++ +T+VL++ ++ L K G+ + + I + R+++
Sbjct: 248 TSVALLDPTLLEESLAQSKLTLVLNAQREICVLDKSYGSPID-AHLLLHLIQIGLIRIQQ 306
Query: 288 LHQILEEAIS 297
L + LE A+S
Sbjct: 307 LTERLEHALS 316
>gi|225718348|gb|ACO15020.1| Exosome complex exonuclease RRP45 [Caligus clemensi]
Length = 366
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 20/233 (8%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D R + R+ I +G G+A +G T +LA+ V P P+EG
Sbjct: 15 LREGKRLDGRKVDERRDICIHLGREW---GTAEVSLGDTRVLASTSCSVGEPRSVRPNEG 71
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ PL + EA + + + + S ++++ L + + W++ L
Sbjct: 72 ILKTHI------EPLSKRSMTTEALVELNRVIERVLKESKCVDMESLCISSEEKVWIISL 125
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
++ L G D A ++ +AA + + P V+L KI + P ++PV
Sbjct: 126 EMTLLSDAGNAADCASIAGLAALCHFKRPDVTLKGDKIRIHP------FYGRDPV----- 174
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
L + P T L+ L DP+ EEE++M+ V ++ ++ +L+ G
Sbjct: 175 PLAIHHHPVLSTFALYGRVSLLDPSREEEAVMDGKVVPGMNPYREICALHLAG 227
>gi|146097099|ref|XP_001468039.1| putative exosome-associated protein 2 [Leishmania infantum JPCM5]
gi|134072405|emb|CAM71114.1| putative exosome-associated protein 2 [Leishmania infantum JPCM5]
Length = 312
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 23/149 (15%)
Query: 121 KQLSDTISS--SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQ 178
+QL I + G +L +LS+ G+A W + + + L DG L +L +A+AA L
Sbjct: 153 RQLEGHIGTVLDGCFDLSQLSIYEGEACWALNVSVLLLSFDGGLRAGSLHAALAALHKLH 212
Query: 179 IPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL---HKNYILADP 235
+P L +G ++ E R++ L +P + T + ++AD
Sbjct: 213 LPRTRLPNGDVI------------------EGRQVQLSCMPVACTFGFLAGAQVRLVADT 254
Query: 236 TSEEESIMETLVTVVLDSSNQLVSLYKPG 264
T+ EE I + L+TVV+D + ++VS++ G
Sbjct: 255 TAIEEHIADGLITVVVDEAERIVSVHHTG 283
>gi|398021228|ref|XP_003863777.1| exosome-associated protein 2, putative [Leishmania donovani]
gi|322502010|emb|CBZ37094.1| exosome-associated protein 2, putative [Leishmania donovani]
Length = 312
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 23/149 (15%)
Query: 121 KQLSDTISS--SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQ 178
+QL I + G +L +LS+ G+A W + + + L DG L +L +A+AA L
Sbjct: 153 RQLEGHIGTVLDGCFDLSQLSIYEGEACWALNVSVLLLSFDGGLRAGSLHAALAALHKLH 212
Query: 179 IPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL---HKNYILADP 235
+P L +G ++ E R++ L +P + T + ++AD
Sbjct: 213 LPRTRLPNGDVI------------------EGRQVQLSCMPVACTFGFLAGAQVRLVADT 254
Query: 236 TSEEESIMETLVTVVLDSSNQLVSLYKPG 264
T+ EE I + L+TVV+D + ++VS++ G
Sbjct: 255 TAIEEHIADGLITVVVDEAERIVSVHHTG 283
>gi|336381696|gb|EGO22847.1| hypothetical protein SERLADRAFT_471294 [Serpula lacrymans var.
lacrymans S7.9]
Length = 334
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 18/158 (11%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIG--------STTMLAAIKMEVMT-PSLE 86
+R D R+L R + G A+GSA IG T +LAA+K+EV T E
Sbjct: 22 LRADGRALYDFRAVALETGVAPLANGSARINIGRNAHDGGGGTEILAAVKLEVETVADGE 81
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLS----DTISSSGMINLKELSLVG 142
D G V CSP P P+ A + L+ DT+S + K L ++
Sbjct: 82 GVDGGRVVGTVS----CSPAAYPHLPSGALDDLQHDLTSVLHDTVSHPSL-RPKNLGIIP 136
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP 180
GK +W++ LD+ L DG + DA ++A AA + ++P
Sbjct: 137 GKKSWLLNLDVIVLSDDGNVCDALFMAARAALWDTKVP 174
>gi|154343557|ref|XP_001567724.1| putative exosome-associated protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065056|emb|CAM43169.1| putative exosome-associated protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 312
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 26/177 (14%)
Query: 121 KQLSDTISS--SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQ 178
+QL IS+ G +L +LS+ G+A W++ +++ L DG L +L +A+AA L
Sbjct: 153 RQLEGYISTVLDGCFDLSQLSIYEGEACWVLNVNVLLLSFDGGLRAGSLHAALAALHKLH 212
Query: 179 IPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL---HKNYILADP 235
+P L +G ++ E R++ L +P + T + ++ D
Sbjct: 213 LPRTRLPNGDVI------------------EGRQVQLSCMPVACTFGFLAGAQVRLVTDT 254
Query: 236 TSEEESIMETLVTVVLDSSNQLVSLYKPGGAVL---AYTSAVQDCIALTRQRVKELH 289
T+ EE + + L+TVV+ LVS++ G L A T+A Q +A + K L+
Sbjct: 255 TAIEERVADGLITVVVSEMEALVSVHHTGRCPLLTQALTAATQQWMATSGAMRKALY 311
>gi|171683893|ref|XP_001906888.1| hypothetical protein [Podospora anserina S mat+]
gi|170941907|emb|CAP67559.1| unnamed protein product [Podospora anserina S mat+]
Length = 358
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/349 (21%), Positives = 147/349 (42%), Gaps = 89/349 (25%)
Query: 19 FRRLFPLRYFERHLA------ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTM 72
F +L P Y R L+ + R + R+ ++R I+ +++ A GS+L + G TT+
Sbjct: 22 FAKLSPHPYLLRTLSPDSPDQQPTRNNGRAPHQSRPIQINTSSLSQAHGSSLVRTGDTTV 81
Query: 73 LAAIKMEVM-----------TPSLESPDEG--------CVSIDFHMPPI-----CSPLVR 108
+ ++ E++ +L DEG D +P I C+P
Sbjct: 82 ICGVRGELLPVTAIPQFRPHNGTLYDQDEGDEARARKELKDYDLLVPNIELATGCAPQFL 141
Query: 109 PGRPAEA-APVVAKQLSDTISSSGMINLKELSLVGGK----------------------- 144
PG P A V+ ++S + +G+++ + L +
Sbjct: 142 PGVPPTTLAQTVSTRVSSLLHGAGVVDGRGLRVWFTPESKKEEGDMEVEGEEEREEQKPQ 201
Query: 145 --AAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD-DGKIVMLPEEQKEENS 201
A W++Y+D+ + DG FDAA + +AA + ++P D D ++V+ + Q
Sbjct: 202 VVAYWVLYIDLLFVSFDGNPFDAAWAAVLAALKDTKLPMARWDPDREMVVCRKGQDT--- 258
Query: 202 EKEPVNKEKRKLTLGGIPFSLTCIL--------------HKNYILADPTSEEESIMETLV 247
+L + G+P + + + ++++IL DP EE + + +V
Sbjct: 259 ----------RLNVRGLPVACSAAVFLEKEHGEVGRGERNRHWILLDPDRSEEELCKEVV 308
Query: 248 TVVLDSSN----QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
TVV+D S+ ++ S+ K GG V+ ++ + + R +E+ + +
Sbjct: 309 TVVVDCSDGGETRVRSIEKQGGTVIGR-ELIRGFVGVAEGRWREVKEAM 356
>gi|346322763|gb|EGX92361.1| ribosomal protein S5 domain 2-type fold domain containing protein
[Cordyceps militaris CM01]
Length = 336
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 135/312 (43%), Gaps = 75/312 (24%)
Query: 19 FRRLFPLRYFERHLAESIR--PDARSLSRA----RNTTISMGAVASADGSALAKIGSTTM 72
F +L P Y +L S + P ARS RA R I++ +++ A GS+L +IG TT
Sbjct: 11 FAKLSPHPYLLANLEPSNQDIPPARSNGRAPDEGRTPEINLSSLSHAHGSSLVRIGDTTA 70
Query: 73 LAAIKME-VMTPSL-----ESPDEGCVSIDFHMPPI-----CSPLVRPGRPAEA-APVVA 120
+ ++ E ++T ++ + + D +P I SP PG P A ++
Sbjct: 71 ICGVRAETILTTNIPNHRASNTESELRDYDLLVPNIELATGSSPQNLPGGPPSTLAQTLS 130
Query: 121 KQLSDTISSSGMINLKELSLVGGKAA-----------------------------WMVYL 151
++ + S +++ + + + A W++Y+
Sbjct: 131 TRVYSLLHGSKLLDAADFRIWYTQTAEPTAEDDEMKDADGQDEAEFSDERQVIAYWVLYI 190
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD-DGKIVMLPEEQKEENSEKEPVNKEK 210
DI+ + DG FDAA + +AA + ++P D D ++V+ S K P
Sbjct: 191 DIFFISLDGNQFDAAWAATLAALRDTKLPRARYDPDSELVVC--------SRKHP----- 237
Query: 211 RKLTLGGIPFSLTCILH-----------KNYILADPTSEEESIMETLVTVVLDSSN---Q 256
+ L++ G P + T + K ++L DP + EES+ + +TVV D + +
Sbjct: 238 KPLSISGFPIACTAAVFTGKETDRPTEGKCWVLVDPDTLEESLCDETLTVVADCTGGAMR 297
Query: 257 LVSLYKPGGAVL 268
++S+ K GG VL
Sbjct: 298 ILSISKHGGTVL 309
>gi|241952166|ref|XP_002418805.1| exosome complex exonuclease, putative; ribosomal RNA-processing
protein, putative [Candida dubliniensis CD36]
gi|223642144|emb|CAX44110.1| exosome complex exonuclease, putative [Candida dubliniensis CD36]
Length = 331
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 17/248 (6%)
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPP-ICSPLVRPGRPAEAAPVV 119
GS +G T ++ I + P + P EG ++I+ +P I E ++
Sbjct: 54 GSVELSLGKTKVMVNITSRITEPYQDRPFEGIMTINCEIPNHIKIQSNDNDNEDEFINLI 113
Query: 120 AKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQI 179
+ L I S ++L+ L ++ G+ W + +D+ L+ DG L D+ L+ + A + +
Sbjct: 114 NRALDRAIRRSNAVDLENLCIIAGEKVWELIIDLQVLNYDGNLIDSGCLAIITALLDFKK 173
Query: 180 PTVSLDD----------GKIVMLPEEQKEENSEKE----PVNKEKRKLTLGGIPFSL-TC 224
P V++++ G I++ +E K E P+ LG +L T
Sbjct: 174 PDVTINNNNTSSNSSTSGNIIIHDDEMKRPFIELSILHIPICLTFSLFNLGSKETNLKTN 233
Query: 225 ILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSA-VQDCIALTRQ 283
+ + L D EES + + + ++ +++L+ L K GG + S Q I L +
Sbjct: 234 DIDQEIWLLDGDVMEESCRDGYLIMTMNQNHELIQLSKIGGGINGGVSIDGQQLINLCHE 293
Query: 284 RVKELHQI 291
+ E++++
Sbjct: 294 SIDEINRL 301
>gi|348678132|gb|EGZ17949.1| hypothetical protein PHYSODRAFT_502345 [Phytophthora sojae]
Length = 517
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 123/292 (42%), Gaps = 49/292 (16%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSI 95
+R D R L + R + + + A ++G T ++ + E++ P + P EG +
Sbjct: 28 VRADGRELLQQRKIRVQFRR-SETESQAEVQLGRTRVIGNVHGEIVPPFPDRPTEGFLHF 86
Query: 96 DFHMPPICSPLVRPGRPAE-------AAPVVAKQLSDTISSSGMINLKELSLVGGKAAWM 148
+ P+ SP A AA +A+ + + S ++ + L++V G+ W
Sbjct: 87 AVELSPMASPSFEAAASAGRGAASSVAAAELARLVERGVRESRALDTEALAVVAGEKVWA 146
Query: 149 VYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGK------IVMLPEEQKEENSE 202
+ ++ +D G L DAA L+A+AA + + P V++ +G V +E
Sbjct: 147 ITCHVHVVDHGGNLVDAASLAAIAALMHYRRPEVAVKEGTAGNGGVTVYSVDEHA----- 201
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILH---------------------KNYILADPTSEEE 240
L+L IP S++ C L + I DPT EE
Sbjct: 202 -------AVPLSLHHIPISISFCFLQPAAKIQNNAGNDDDIDADEDGEPIIFMDPTDREE 254
Query: 241 SIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
I + ++ +S +L +++K GGA ++ ++ ++ C + RV EL L
Sbjct: 255 RITDARMSFTFNSFRELCAVHKIGGAAISQSTVLR-CANVAAARVVELTTFL 305
>gi|413953850|gb|AFW86499.1| hypothetical protein ZEAMMB73_626410 [Zea mays]
Length = 448
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 91/174 (52%), Gaps = 15/174 (8%)
Query: 127 ISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSL 184
+ S ++++ L +V GK W V++D++ LD G L DAA ++A+AA S P TV
Sbjct: 14 VRESRAVDMEFLCVVAGKHVWSVHVDLHILDDGGNLIDAANIAALAALSTFWRPECTVGG 73
Query: 185 DDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL--HKNYILADPTSEEESI 242
DDG+ V + +P ++ LT+ +P ++T N ++ DPT +EE++
Sbjct: 74 DDGQQVTV----------HDPEVRDPLPLTIHHMPIAVTFAYFGEGNIVVLDPTYKEEAV 123
Query: 243 METLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
M + +++S+ + ++ K GG L +S C+ + + ++ +++A+
Sbjct: 124 MGGRMAAIVNSNGDVCAIQKAGGEGL-MSSVTMQCLRIASVKAADITSKIKKAV 176
>gi|145349570|ref|XP_001419203.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579434|gb|ABO97496.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 257
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 109/254 (42%), Gaps = 24/254 (9%)
Query: 60 DGSALAKIGSTTMLAAIKMEVMTP-SLESPDEGCVSIDFHMPP-ICSPLVRPGRPAEAAP 117
+G + ++G T A+ + P S + EG + +D C R GR
Sbjct: 7 EGVCVVRLGRTIACASTSAMLERPQSAGASSEGVLRVDCEFSSGACEGFAREGRANRETR 66
Query: 118 VVAKQLS----DTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAA 173
AK L + + ++++ L ++ GK W+V + L DG L AA L+A +
Sbjct: 67 QRAKDLGALLERGLKDARAVDVESLCVLAGKRVWVVTCAVTILAHDGNLAGAASLAACGS 126
Query: 174 FSNLQIPTVSLD--DGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLT-CILHK-- 228
+ P ++D G + + + + E P+N P + T C +
Sbjct: 127 LMTYRRPECAVDPNTGTVTVHSADAR----EAIPLNMHH-------FPIASTYCFFDEVP 175
Query: 229 NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKEL 288
+ADPT EEE + + VV+++ +++ +L K G V + ++ C+ + +E
Sbjct: 176 GLAVADPTLEEEVTADASIVVVVNTHDEVCALSKTGNGV--PSEDLKRCVRNASRTAREW 233
Query: 289 HQILEEAISGMEID 302
++L+EA + E D
Sbjct: 234 TELLKEAAADFEAD 247
>gi|320586467|gb|EFW99137.1| 3 exoribonuclease family protein [Grosmannia clavigera kw1407]
Length = 389
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 144 KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL--DDGKIVMLPEEQKEENS 201
KA W +Y+D+ L DG FDAA + VAA + Q+P D G++V P Q E S
Sbjct: 222 KAYWTLYIDLLFLSFDGNPFDAAWAAVVAALRDTQLPLARWDADRGEVVCSP--QTETES 279
Query: 202 EKEPVNKEKRKLTLGGIPFSLT---CILHKN--------YILADPTSEEESIMETLVTVV 250
E E LTL G+P + T C+ +K +IL DP EE+ VTVV
Sbjct: 280 EPETNVASSAPLTLRGLPVATTAVVCVENKKKRQQGGARWILLDPDRLEENQCRETVTVV 339
Query: 251 LDSSN---QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEA 295
+D S+ +V G VL + +A +R L + L+ A
Sbjct: 340 VDRSDGSQTMVRALSKTGGVLVGPRELHALVAAAEKRWTALAEALDSA 387
>gi|256079241|ref|XP_002575897.1| Exosome complex exonuclease RRP43 [Schistosoma mansoni]
gi|350645838|emb|CCD59477.1| Exosome complex exonuclease RRP43, putative [Schistosoma mansoni]
Length = 311
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 107/251 (42%), Gaps = 41/251 (16%)
Query: 22 LFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVM 81
L P FE+ IR + R + ++ G + S GSAL K+G T ++A +K++V+
Sbjct: 7 LKPYAVFEQLFEHKIRIEDRDCLEFADINVAAGVLTSCHGSALVKVGKTQVIAGVKVKVI 66
Query: 82 TPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI-------------S 128
ES + G V+ + +C R R P A+ LS TI S
Sbjct: 67 P---ESGNSGSVTCNVEFAGLCH---RGSRLNTPQPKCAQWLSSTIQRLLNNFAFPSIES 120
Query: 129 SSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGK 188
+ ++ + + + A++ + LD++ L DG L DA + +A+ + + K
Sbjct: 121 QLNIFSINDPNTLTPVASYTLKLDVFILHDDGCLLDACVPAALVSLCTTKW-------TK 173
Query: 189 IVMLPEEQKE----ENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNY---------ILAD 234
+ + +EQ E + P+N E L + P SL+ C + + I+A
Sbjct: 174 LYAVTDEQAAGSYLELYKPGPLN-ETISLKVNEWPVSLSFCFVPRPVADRKSKTVPIIAQ 232
Query: 235 PTSEEESIMET 245
PT E I +T
Sbjct: 233 PTKRELDIWDT 243
>gi|393248126|gb|EJD55633.1| ribosomal protein S5 domain 2-like protein [Auricularia delicata
TFB-10046 SS5]
Length = 310
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 6/148 (4%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSI 95
+R D R L R +I G + A+GSA IG T +LA+ K+EV D G ++
Sbjct: 19 VRADGRGLLDYRTVSIVRGTIPLANGSARVSIGGTEVLASAKLEVT-----DADRGAIAC 73
Query: 96 DFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYC 155
+ P P + PG + A L + ++ L+++ K AW++ LD+
Sbjct: 74 NVVCPVSAYPTLAPGALDDLAADHTHVLHSVLGDPSLVP-DTLTIIPKKKAWLLTLDLLV 132
Query: 156 LDADGALFDAALLSAVAAFSNLQIPTVS 183
+ G ++DA L+A A + ++P S
Sbjct: 133 MADAGNIYDALFLAARIALIDTRVPRTS 160
>gi|149240693|ref|XP_001526201.1| hypothetical protein LELG_02759 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450324|gb|EDK44580.1| hypothetical protein LELG_02759 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 341
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 3/154 (1%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L +R + RSL + R+ +I + G GST + I + P + P EG
Sbjct: 19 LKSQLRLNGRSLMQLRDISIYLSPTEY--GYVEVSFGSTKLSVRISASITKPYEDRPFEG 76
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPV-VAKQLSDTISSSGMINLKELSLVGGKAAWMVY 150
I+ + P+ S R + V +++ + +I S ++L+ L ++ G+ W +
Sbjct: 77 IFVINSEISPMASLKFDTTRSQQQDEVLISRIIEKSIRRSNALDLENLCIIAGEQCWEIT 136
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL 184
D+ + DG + D + + A S+ + P VS+
Sbjct: 137 ADLNFWNYDGGMIDIGCFATMLALSHFKKPDVSI 170
>gi|255086427|ref|XP_002509180.1| predicted protein [Micromonas sp. RCC299]
gi|226524458|gb|ACO70438.1| predicted protein [Micromonas sp. RCC299]
Length = 243
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 101/240 (42%), Gaps = 40/240 (16%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIG-----STTMLAAIKMEVM 81
Y + + +R D R R TI +G V + GSA ++G +T ++ A+K ++
Sbjct: 10 YIVGGVVDDLRNDGRGRLDYRQITIDLGVVPQSSGSARVRLGIIPGETTDVIVAVKADIG 69
Query: 82 TPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPV-VAKQLSDTI---SSSGM----- 132
TP ++P G + + I + + GR E V +A+ L ++ ++ GM
Sbjct: 70 TPPKDNPTHGRIQCAVELSAI-ADVDYMGRGGETLGVELARALERSLTGQTTGGMGSLAD 128
Query: 133 --------------------INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVA 172
+++ L + GK W++ D L +DG++ DA ++
Sbjct: 129 AVAGERGADARVSKHGPGAALDMSTLGIQKGKTCWLLQCDGVVLTSDGSVLDALSIATKC 188
Query: 173 AFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYIL 232
A ++ +IP V+ V P+ E + KL + G+P +TC+ +IL
Sbjct: 189 ALADAKIPKVTA-----VAGPDADDPAELELDDDPAACSKLDVSGVPLIVTCVGVGKFIL 243
>gi|312071046|ref|XP_003138427.1| 3' exoribonuclease [Loa loa]
gi|307766409|gb|EFO25643.1| 3' exoribonuclease [Loa loa]
Length = 307
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 127/288 (44%), Gaps = 40/288 (13%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E +R D RS R + G +A+ +GSA +IGST +L +K E++ S+E+
Sbjct: 19 EGLRADGRSPFDYRPVIVQTGVLATTNGSARVRIGSTDLLIGVKAELI--SVENIALYRN 76
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMIN-----LKELSLVGGKAAWM 148
++F + CS P A +LS + ++ N LK+L ++ W
Sbjct: 77 RLNFFVD--CSANATPLFAGRGGEEFADELSAALDAAYDNNYVLPDLKKL-ILSPMHVWK 133
Query: 149 VYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNK 208
+++DI L DG + DAA L AA + +I K+++ P ++ + + P +
Sbjct: 134 LFVDIVLLQCDGNVIDAAGLGVKAALKDTEIS-------KVIVRPADEGKYTIDL-PDDN 185
Query: 209 EKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVL----------DSSNQLV 258
KL +P ++ + + D + EE+ T V + + SNQ
Sbjct: 186 TVWKLNTSRVPLFVSVNRLGSAKIVDNSLAEEACTRTSVWIAAAPHFVSDTDHNKSNQ-- 243
Query: 259 SLYKPGGAVLAY----------TSAVQDCIALTRQRVKELHQILEEAI 296
S+ K G V+ + ++++ I++ + V++LH+ L+ +
Sbjct: 244 SVVKRNGGVITFMRQCGGGTLEVDSLEEMISIGLKAVRQLHEALDRRL 291
>gi|154302252|ref|XP_001551536.1| hypothetical protein BC1G_09909 [Botryotinia fuckeliana B05.10]
Length = 189
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 25/163 (15%)
Query: 144 KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEK 203
KA W +Y+DI + DG DAA + V+A N+++P D + ++L +++ +
Sbjct: 36 KAFWTLYIDILFISLDGNPLDAAWAAVVSALRNVRLPKAHWDADREMILCDDEVSLS--- 92
Query: 204 EPVNKEKRKLTLGGIPFSLTCIL-----------HKNYILADPTSEEESIMETLVTVVLD 252
+KLTL G+P + T ++ K +ILADP + EE + + +T+V+D
Sbjct: 93 -------KKLTLRGLPIAATFLVFRAKEQKRGKDKKFWILADPDTFEEGLCDESITMVVD 145
Query: 253 SSN---QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
+++ L K GG + ++ + L R EL +L
Sbjct: 146 CKADKPKILGLSKVGGTTVG-KDEMKHVLELAETRWHELSPLL 187
>gi|402074963|gb|EJT70434.1| exosome complex exonuclease RRP43 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 372
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/294 (20%), Positives = 111/294 (37%), Gaps = 85/294 (28%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVM----TPSLESP---- 88
R + R+ AR ++ G+++ A GSA+ + G TT++ ++ EV+ P+ P
Sbjct: 37 RTNGRAPREARPVNVNAGSLSHAHGSAVVRAGDTTVICGVRTEVLPIANIPNYRVPPPRP 96
Query: 89 ---------------------------DEGCVSIDFHMPPICSPLVRPGRPAEA-APVVA 120
D V + + +P PG P A ++
Sbjct: 97 DDDDDGDDDGEAGQKEEEEEGGRNELRDYDLVVPNIELATGSAPQFLPGVPPTTLAQTLS 156
Query: 121 KQLSDTISSSGMINLKELSLVGG---------------------------KAAWMVYLDI 153
++ + +SG++N+ +L + KA W++Y+D+
Sbjct: 157 SRVYSLLHASGLLNVADLRIWDEGSNSNSKPGENEEMGEADDGMEQKPQVKAYWVLYIDV 216
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKL 213
+ DG FD A + VAA + ++P D ++E R L
Sbjct: 217 LFISFDGNPFDVAWTAVVAALRDTRLPRAVWD---------AEREAAVCSRADGSPGRPL 267
Query: 214 TLGGIPFSLTCILHKN-------------YILADPTSEEESIMETLVTVVLDSS 254
++ G+P + T + + ++L DP EES+ + VTVV+D S
Sbjct: 268 SVRGLPVACTAAVFRGKDDPDAASGDGQYWVLLDPDRLEESLCDEFVTVVVDRS 321
>gi|225712550|gb|ACO12121.1| Exosome complex exonuclease RRP45 [Lepeophtheirus salmonis]
Length = 210
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 25/216 (11%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L+E R D R L R+ TI G G+ K+G T +LA+ V P P+EG
Sbjct: 15 LSEGKRLDGRKLDERRDLTIHFG---REWGTTEVKLGETRVLASTSCSVGEPQSSRPNEG 71
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ I PL + EA + + + + S ++++ L + G+ W++ L
Sbjct: 72 VLKIRME------PLAKRSMTTEALVELNRVIERVLKQSKCLDMESLCISSGEKVWIISL 125
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
++ L+ G D A ++ +AA + + P V+L K + K V K
Sbjct: 126 EMTILNDAGNAADCASVAGLAALCHFKRPDVTL------------KANTTPK--VIKSVY 171
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLV 247
L+ GI F L + + Y+L EES+ LV
Sbjct: 172 ILSTNGIRFLLRFTIIQFYLLLHFM--EESLFRILV 205
>gi|341877085|gb|EGT33020.1| CBN-EXOS-7 protein [Caenorhabditis brenneri]
Length = 310
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 123/282 (43%), Gaps = 19/282 (6%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTT-MLAAIKMEVMTPSLESPDEGCVS 94
IR D RS R + G ++ +GS ++G TT +L IK+E+ + + E
Sbjct: 21 IRNDGRSCQDFRTIVLERGVLSGTNGSCRVQLGQTTDILTGIKLELESYDSATEKEAKQP 80
Query: 95 IDFHM---PPICSPLVRPGRPAEAAPVVAK-QLSDTISSSGMINLKELSLVGGKAAWMVY 150
+ FH+ S G + A Q++ + S M NL + L G W +
Sbjct: 81 MQFHVDFSANASSQFAGKGGDQYGEEISAAFQVAYSRSLDIMSNLSKTHLAEG-YRWKIN 139
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL---DDGKI-VMLPEEQKEENSEKEPV 206
+D+ L G++ DA L+ + A S+L+IP V + D GK+ ++L + N E V
Sbjct: 140 VDVSVLQWAGSIPDAISLAVIGALSDLEIPEVEVAPDDGGKVSIVLKRPRIGGNVRDEEV 199
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVL--------DSSNQLV 258
+ +L + P LT L D + EEE + + + + + + + Q
Sbjct: 200 PVQMWRLDVQSCPLLLTISKIGTANLVDCSPEEECCIRSQLLIGIAKSVSTPGNDTYQTT 259
Query: 259 SLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
+ + GG +L S +++ I + ++ L++ L + + E
Sbjct: 260 CIKQLGGGLLEMES-IENMIEMAQKTSIGLYEALAKRLKAEE 300
>gi|167044148|gb|ABZ08830.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG5E24]
Length = 245
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 10/148 (6%)
Query: 35 SIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAI--KMEVMTPSLESPDEGC 92
IR D R ++ R TI +G + +ADGSA + G +LA + +V + +PD G
Sbjct: 15 GIRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGI 74
Query: 93 VSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLD 152
+ + +HM P + P+ ++K L + + + + L++ + A VYL+
Sbjct: 75 LRVRYHMEPFSVSERKNPAPSRREIEISKVLKEALEPA--VILEKFP----RTAIDVYLE 128
Query: 153 IYCLDADGALFDAALLSAVAAFSNLQIP 180
+ L ADG AAL +A A ++ IP
Sbjct: 129 V--LQADGGTRCAALDAASVALADAGIP 154
>gi|167044510|gb|ABZ09185.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG6J21]
Length = 245
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 10/148 (6%)
Query: 35 SIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAI--KMEVMTPSLESPDEGC 92
IR D R ++ R TI +G + +ADGSA + G +LA + +V + +PD G
Sbjct: 15 GIRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGI 74
Query: 93 VSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLD 152
+ + +HM P + P+ ++K L + + + + L++ + A VYL+
Sbjct: 75 LRVRYHMAPFSVSERKNPAPSRREIEISKVLKEALEPA--VILEKFP----RTAIDVYLE 128
Query: 153 IYCLDADGALFDAALLSAVAAFSNLQIP 180
+ L ADG AAL +A A ++ IP
Sbjct: 129 V--LQADGGTRCAALDAASVALADAGIP 154
>gi|429852255|gb|ELA27400.1| 3 exoribonuclease family protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 315
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 28/163 (17%)
Query: 145 AAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKE 204
A W++Y+DI+ + DG FDAA S +AA + IP D P+ + S
Sbjct: 165 AYWVLYIDIFFISLDGNPFDAAWASVLAALRDTTIPIARWD-------PDREMVICSRDN 217
Query: 205 PVNKEKRKLTLGGIPFSLTCILH------------KNYILADPTSEEESIMETLVTVVLD 252
P + LT+ G P + T + K + L DP + EE + + VT V+D
Sbjct: 218 P-----KPLTINGFPVACTAGVFTGKETTDKPADGKFWTLVDPDTLEEGLCDEEVTAVVD 272
Query: 253 SSNQ---LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
S + ++++ K GG L +++ + + QR +E+ + +
Sbjct: 273 RSGEETKILAISKHGGTALQ-PQLIREFVGVAEQRWEEVRKAM 314
>gi|392588434|gb|EIW77766.1| ribosomal protein S5 domain 2-like protein [Coniophora puteana
RWD-64-598 SS2]
Length = 342
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIG-------STTMLAAIKMEVMTPS---LE 86
R D R L+ RN + G A+GSA IG T ++AAIK+EV S +
Sbjct: 23 RIDGRDLTDYRNIALETGVAPLANGSARVNIGRQRDGGGGTEVVAAIKLEVEDASDRDED 82
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS---SGMINLKELSLVGG 143
DE V CSP P + A + L+ + S + K L++V G
Sbjct: 83 GVDEAEVEGRIIGAVSCSPAAYPHLSSNAVDDLQHDLTAVLHSVLAHPTLRPKNLTIVPG 142
Query: 144 KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP 180
K AW V+LD+ G + DA ++A AA + ++P
Sbjct: 143 KKAWAVHLDVVVYSDAGNVCDAIFMAARAALWDTKVP 179
>gi|358335737|dbj|GAA29354.2| exosome complex component RRP45 [Clonorchis sinensis]
Length = 474
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 124/276 (44%), Gaps = 21/276 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSA--LAKIGSTTMLAAIKMEVMTPSLESPD 89
L + R D RSL R + A D ++ + IG+T+++A + EV+ P P
Sbjct: 44 LVDGYRLDGRSLHEYREISFRFPRSAEDDHNSCCIVNIGATSVVARVSAEVLEPKPSRPS 103
Query: 90 EGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS--SGMINLKELSLVGGKAAW 147
+G + ++F + L+ P + ++LS + + ++L L +V + +
Sbjct: 104 QGMLFVNFDV-----TLIHPNAASRHKIEEGRRLSSVLQTLLRDSVDLDSLCIVAWERVF 158
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVN 207
+ +++ L DG L D L+A++A + + P V + D V + E K
Sbjct: 159 AIRVELRALSYDGNLGDCGALAAISALAAFRRPDVFVQDNGTVTVDTEAKY--------- 209
Query: 208 KEKRKLTLGGIPFSLTCILHKN--YILADPTSEEESIME-TLVTVVLDSSNQLVSLYKPG 264
+ + L L IP +T + + I+ D T+ E++I+ V + + S +++ LY G
Sbjct: 210 RPRVALGLRRIPVLVTFGMTADATVIVQDATAREDAILTGGRVMIGVTSFSEVCCLYTTG 269
Query: 265 GAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
++++ C+ + R + L ++ + G++
Sbjct: 270 LTKPLRSTSLSKCVRMADSRARSLVALVNRVLDGLK 305
>gi|167044981|gb|ABZ09646.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8G2]
Length = 245
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 10/148 (6%)
Query: 35 SIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAI--KMEVMTPSLESPDEGC 92
IR D R ++ R TI +G + +ADGSA + G +LA + +V + +PD G
Sbjct: 15 GIRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGI 74
Query: 93 VSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLD 152
+ + +HM P + P+ ++K L + + + + L++ + A VYL+
Sbjct: 75 LRVRYHMEPFSVSERKNPAPSRREIEISKVLKEALEPA--VILEKFP----RTAIDVYLE 128
Query: 153 IYCLDADGALFDAALLSAVAAFSNLQIP 180
+ L ADG AAL +A A ++ IP
Sbjct: 129 V--LQADGGSRCAALDAASVALADAGIP 154
>gi|219129572|ref|XP_002184959.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403454|gb|EEC43406.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 269
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 123/279 (44%), Gaps = 30/279 (10%)
Query: 36 IRPDARSLSRARNTTISM-----GAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDE 90
+R D R ++ R++ +S+ GA + ++ T E++ P+ + P+E
Sbjct: 1 LRTDGRVWNQLRSSRLSLTRWENGATCTTQWGKGTRVSCT-----CTAELLPPNPDRPNE 55
Query: 91 GCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVY 150
G V++ + P S R P + + L + + G ++ + L + W +
Sbjct: 56 GMVALSVDLSPSASTAFRQAAPVTTGGSILRSLERVLLTGGALDTEALCVTPQYWVWKLS 115
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL-DDGKIVMLPEEQKEENSEKEPVNKE 209
L + LD G L DA++L+A+AA + + P V L +G +P + + KEPV
Sbjct: 116 LAVTVLDDGGNLMDASVLAALAALRHYRKPHVELAAEGSNSGVPPRWIQSDL-KEPV--- 171
Query: 210 KRKLTLGGIPFSLTCIL------------HKNYILADPTSEEESIMETLVTVVLDSSNQL 257
L L P S++ L K +L DP + EE + +++ ++ ++
Sbjct: 172 --PLPLHHTPLSISFALLPHDTAAQSTASAKVTLLVDPDAREELVSVGTLSIAMNVHGEV 229
Query: 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
L GG LA T +++ L Q V++L Q LE ++
Sbjct: 230 CLLDFGGGCELA-TERLREAYRLAAQHVQDLCQALETSL 267
>gi|41614907|ref|NP_963405.1| exosome complex RNA-binding protein Rrp42 [Nanoarchaeum equitans
Kin4-M]
gi|40068631|gb|AAR38966.1| NEQ111 [Nanoarchaeum equitans Kin4-M]
Length = 218
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 92/242 (38%), Gaps = 44/242 (18%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
+ Y E+ L + D R L R I +G+T ++A + + P
Sbjct: 1 MHYIEQKLMDGFHIDNRPLLEYRPIKIK-----EDQNRVWLSLGNTQVIAGLSISEEEPM 55
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGK 144
+ V+ DF PI G P E ++A+ + + SS I L E ++
Sbjct: 56 EKGKANLIVNADF--SPIAGKEYFQGPPTEQDLILARLIDRALRSSNAIAL-EKHVIDEN 112
Query: 145 AAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKE 204
Y+D+ L+ DG + DA++L+ V E
Sbjct: 113 KVKSFYIDVIVLEDDGNILDASMLAVVKLL-----------------------------E 143
Query: 205 PVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
N +RK P ++ +KN I DPT EEE I +++ +D N +VS+ K
Sbjct: 144 KANLLERK------PLYISFYKYKNIIFVDPTKEEEQISNAKISIAIDGEN-IVSIQKDY 196
Query: 265 GA 266
G+
Sbjct: 197 GS 198
>gi|221484017|gb|EEE22321.1| exosome complex exonuclease, putative [Toxoplasma gondii GT1]
gi|221505289|gb|EEE30943.1| exosome complex exonuclease, putative [Toxoplasma gondii VEG]
Length = 291
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 16/169 (9%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
L Y E +A ++R D R+ R + + A+ SA+ + T+L + M++ P+
Sbjct: 45 LLYLEEGVACNVREDGRACVEVRPSQVETFALPKCSASAIVRSSENTVLCGVSMQLARPT 104
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGM-----------I 133
+PDEG + + CS + G + + L + S+S + +
Sbjct: 105 -AAPDEG----EVFLTVDCSAALGVGGVGGGVALESFGLGEGSSNSSLQALLSDMVLSAV 159
Query: 134 NLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTV 182
+ K+L LV GK W V++D L A G L DA L+ AA +P V
Sbjct: 160 DKKKLCLVPGKLIWRVFVDCMVLKAGGCLLDAVSLAVHAALRTTVLPCV 208
>gi|237836521|ref|XP_002367558.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
gi|211965222|gb|EEB00418.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
Length = 297
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 16/169 (9%)
Query: 25 LRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
L Y E +A ++R D R+ R + + A+ SA+ + T+L + M++ P+
Sbjct: 51 LLYLEEGVACNVREDGRACVEVRPSQVETFALPKCSASAIVRSSENTVLCGVSMQLARPT 110
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGM-----------I 133
+PDEG + + CS + G + + L + S+S + +
Sbjct: 111 -AAPDEG----EVFLTVDCSAALGVGGVGGGVALESFGLGEGSSNSSLQALLSDMVLSAV 165
Query: 134 NLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTV 182
+ K+L LV GK W V++D L A G L DA L+ AA +P V
Sbjct: 166 DKKKLCLVPGKLIWRVFVDCMVLKAGGCLLDAVSLAVHAALRTTVLPCV 214
>gi|340059876|emb|CCC54273.1| putative exosome-associated protein 2 [Trypanosoma vivax Y486]
Length = 273
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 130/275 (47%), Gaps = 42/275 (15%)
Query: 1 MGLPNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTI--SMGAVAS 58
M LP A+ +E+ +F++ Y R LA++ R D RSL R I ++
Sbjct: 1 MSLPPAT----GAVELASFQQ-----YVLRLLAQNKRLDGRSLDAIRLPQIISDSQSITR 51
Query: 59 ADG---SALAKIGSTTMLAAIKMEVMTPSL-ESPDEGCVSIDFHMPPICSPLVRPGRPAE 114
DG S L + T + + P L E P+EG +++D P P R
Sbjct: 52 TDGVLASTLYTDETGTYIQCTVCGLFGPPLAERPEEGRLTVDITAPFF--PSYGADRVTT 109
Query: 115 AAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAF 174
A A + TI S ++LKELS++ G+A W+V +++ ++ADG L A+L +A+AA
Sbjct: 110 ALREAAHFVRSTIISC--MDLKELSILPGEACWVVQVELVVVNADGGLRAASLHAALAAL 167
Query: 175 SNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKN----- 229
+ +P L +G V + ++L IP + T ++K+
Sbjct: 168 HGMLLPRSRLPNGYEV------------------QGKQLCFHTIPIATTIGVYKHSCGEL 209
Query: 230 YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+L D ++ EES+++ L+TV +D SN +V L + G
Sbjct: 210 RLLMDTSAAEESVVDGLMTVAIDDSNCIVGLIQNG 244
>gi|294868324|ref|XP_002765481.1| exosome complex exonuclease rrp45, putative [Perkinsus marinus ATCC
50983]
gi|239865524|gb|EEQ98198.1| exosome complex exonuclease rrp45, putative [Perkinsus marinus ATCC
50983]
Length = 349
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 9/143 (6%)
Query: 61 GSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVA 120
G A IG T + A + ++ +P P EG +SI+ P+ +P V P + A
Sbjct: 10 GQAECSIGKTRIRAVVTGQLTSPPSNRPREGRLSINVEAGPMAAPAVLPSGNSSGLVGSA 69
Query: 121 K---------QLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAV 171
+ QL + S ++++ L + G W + LD++ L +G + DAA ++++
Sbjct: 70 QTPEGISLCNQLERMLKGSNAVDVEALCIQSGSLVWELRLDVHVLSDNGNVGDAAAIASI 129
Query: 172 AAFSNLQIPTVSLDDGKIVMLPE 194
A + + VS+ +G+I+ P+
Sbjct: 130 VALRHYRRAEVSVVNGEIIYKPD 152
>gi|367042500|ref|XP_003651630.1| hypothetical protein THITE_2112144 [Thielavia terrestris NRRL 8126]
gi|346998892|gb|AEO65294.1| hypothetical protein THITE_2112144 [Thielavia terrestris NRRL 8126]
Length = 378
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/346 (21%), Positives = 140/346 (40%), Gaps = 108/346 (31%)
Query: 19 FRRLFPLRYFERHLAES------IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTM 72
F +L P Y R LA S +R + R+ AR ++ +++ A GSAL + G +T+
Sbjct: 23 FAKLSPHPYLLRSLAPSSPDRPPVRTNGRAPHEARAVHVNASSLSHAHGSALVRAGDSTV 82
Query: 73 LAAIKMEVM------------TPSLESPDEGCVS----------------------IDFH 98
+ ++ E++ +L DE + D
Sbjct: 83 ICGVRGELLPVERIPLFRPRNRKTLHGDDEDDAAQQEGGRGITGSGTGTGRGELRDYDLL 142
Query: 99 MPPI-----CSPLVRPGRPAEA-APVVAKQLSDTISSSGMINLKELSLV------GGKAA 146
+P + +P PG P A A +A ++ + ++G++ ++L + GG+ A
Sbjct: 143 VPNVELATGSAPQFLPGVPPTALAQTLASRVYSLLHATGLVRAEDLRVWYRPGEKGGRRA 202
Query: 147 ------------------------WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTV 182
W++Y+D+ + DG FD A + VAA + ++P
Sbjct: 203 GEDVEMGEAEEEDKEKEEERVVAYWVLYIDLLFVSFDGNPFDVAWAAVVAALRDTRLPVA 262
Query: 183 SLD-DGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILH-------------- 227
D D ++V+ E+RKL + G+P + + +
Sbjct: 263 RWDPDREMVVC-------------SRTERRKLDVRGLPVACSAAVFMEKEHREAAAGAGE 309
Query: 228 -KNYILADPTSEEESIMETLVTVVLDSSN---QLVSLYKPGGAVLA 269
+++IL DP EES+ + ++T+V+D S+ ++ S+ K GG VL
Sbjct: 310 GRHWILLDPDRLEESLCQEVITMVVDCSDGETRIKSIEKLGGTVLG 355
>gi|119625655|gb|EAX05250.1| exosome component 9, isoform CRA_d [Homo sapiens]
Length = 393
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/273 (19%), Positives = 106/273 (38%), Gaps = 63/273 (23%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + + + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
PE E++P
Sbjct: 129 ---------------------------------------------YTPE-------ERDP 136
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 137 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 191
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 192 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 223
>gi|226480868|emb|CAX73531.1| hypothetical protein [Schistosoma japonicum]
Length = 310
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 106/250 (42%), Gaps = 40/250 (16%)
Query: 22 LFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVM 81
L P FE+ IR + R + ++ + S GSAL K+G T ++A +K++V+
Sbjct: 7 LKPYAVFEQFFERKIRLEERDCLEFADIDVTADVLTSCHGSALVKVGRTQVIAGVKVKVI 66
Query: 82 TPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI-------------S 128
E+ + G + + +C R R + P A+ LS TI S
Sbjct: 67 P---ENGNSGSIICNVEFAGLCH---RGSRLNASQPKYAQWLSSTIQRLLNNFAFPSVES 120
Query: 129 SSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGK 188
+ +L + + A++ + LD++ L DG L DA + +A+ + + T
Sbjct: 121 QLNIFSLNDSDMSTPVASYSLKLDLFVLHDDGCLLDACVPAALVSLCTTKWTT------- 173
Query: 189 IVMLPEEQKEEN----SEKEPVNKEKRKLTLGGIPFSLT-CILHKNY--------ILADP 235
+ + +EQ + + P+ KE + L G P SL+ C + + I+A P
Sbjct: 174 LFAVTDEQAAGSYLDLYKPGPL-KEIKSLKANGWPISLSFCFVPRPVSGRKRTIPIIAQP 232
Query: 236 TSEEESIMET 245
T E I +T
Sbjct: 233 TRRELDIWDT 242
>gi|171185834|ref|YP_001794753.1| exosome complex exonuclease Rrp41 [Pyrobaculum neutrophilum V24Sta]
gi|254782538|sp|B1Y978.1|ECX1_THENV RecName: Full=Probable exosome complex exonuclease 1
gi|170935046|gb|ACB40307.1| exosome complex exonuclease 1 [Pyrobaculum neutrophilum V24Sta]
Length = 246
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 19/171 (11%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK--MEVMTPSLESPD 89
L +R D R+ + R IS+G +++ADGSA+ G+TT +AA+ E+ L PD
Sbjct: 9 LQGGVRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPD 68
Query: 90 EGCVSIDFHMPPICSPLVRPG-RPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWM 148
G + + +HM P + R P+ ++K L + + + M+ S +
Sbjct: 69 RGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRID------ 122
Query: 149 VYLDIYCLDADGALFDAALLSAVAAFSNLQIP--------TVSLDDGKIVM 191
V+++I L ADG+ A+L +A A ++ I +V L DG +V+
Sbjct: 123 VFIEI--LQADGSTRVASLTAASLALADAGIYMRDLVIGVSVGLVDGTVVL 171
>gi|322697336|gb|EFY89117.1| 3' exoribonuclease family protein [Metarhizium acridum CQMa 102]
Length = 339
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/314 (21%), Positives = 134/314 (42%), Gaps = 76/314 (24%)
Query: 19 FRRLFPLRYF-------ERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTT 71
F +L P Y + H+A + R + R+ + R TT+++ +++ GS+L ++G TT
Sbjct: 12 FAKLSPHPYLLANLEPSDDHVAPA-RSNGRAPDQLRLTTVNLSSLSHPHGSSLVRMGDTT 70
Query: 72 MLAAIKMEVM----TPSLESPDEGCVSIDFHM--PPI-----CSPLVRPGRPAEA-APVV 119
+ ++ E + P+ + + D+ + P I SP PG P A +
Sbjct: 71 AICGVRGETILTQHVPNYRASNRETELRDYDLLVPNIELATGSSPQFLPGGPPTTLAQTL 130
Query: 120 AKQLSDTISSSGMINLKELSLVGGK------------------------------AAWMV 149
+ ++ + S ++ +L + + A W++
Sbjct: 131 STRIYSLLHDSKLLQPDDLRIWHTRPSERMVADDDDKMDEDGENVDEQSGEEYVAAYWVL 190
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKE 209
Y+DI+ + DG FDAA + +AA + ++P D + ++L K+
Sbjct: 191 YIDIFFISFDGNPFDAAWAATLAALRDTKLPRGRYDPDRDMVL------------CTRKD 238
Query: 210 KRKLTLGGIPFSLTCILH-----------KNYILADPTSEEESIMETLVTVVLDSSNQ-- 256
+ LT+ G+P + T + + ++L DP EES+ + +T+V+D +
Sbjct: 239 PKPLTITGMPVACTAAVFTGKETDRPTDGRFWLLVDPDRLEESLCDESITIVVDCQEEAM 298
Query: 257 -LVSLYKPGGAVLA 269
++S+ K GG VL+
Sbjct: 299 RILSISKHGGVVLS 312
>gi|218186707|gb|EEC69134.1| hypothetical protein OsI_38058 [Oryza sativa Indica Group]
Length = 334
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
G+ W +Y+D + +DG L DA + A S+ IP V+ V L EE E
Sbjct: 182 GQVCWDLYIDGLVVSSDGNLLDALAGAIKVALSDTGIPKVN------VSLSATTDEE-PE 234
Query: 203 KEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
+ ++E + +P +T + + D TSEEES M + V+V ++ Q+ L K
Sbjct: 235 VDVSDEEFLQFDTSSVPVIVTLTKVGKHYIVDATSEEESQMSSAVSVSVNRHGQICGLTK 294
Query: 263 PGGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GGA L S + D I++ + ++ +L+ I
Sbjct: 295 RGGAGLD-PSVIFDMISVAKHVSRQFISVLDSEI 327
>gi|322703882|gb|EFY95484.1| 3' exoribonuclease family protein [Metarhizium anisopliae ARSEF 23]
Length = 339
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/314 (21%), Positives = 138/314 (43%), Gaps = 76/314 (24%)
Query: 19 FRRLFPLRYF-------ERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTT 71
F +L P Y + H+A + R + R+ R TT+++ +++ GS+L ++G TT
Sbjct: 12 FAKLSPHPYLLANLEPSDDHVAPA-RSNGRAPEEVRPTTVNLSSLSHPHGSSLVRMGDTT 70
Query: 72 MLAAIKMEVM----TPSLESPDEGCVSIDFHM--PPI-----CSPLVRPGRPAEA-APVV 119
++ ++ E + P+ + + D+ + P I SP PG P A +
Sbjct: 71 VICGVRGETILAQHIPNYRASNRETELRDYDLLVPNIELATGSSPQFLPGGPPTTLAQTL 130
Query: 120 AKQLSDTISSSGMINLKELSLVGGK------------------------------AAWMV 149
+ ++ + S ++ ++L + + A W++
Sbjct: 131 STRIYSLLHDSKLLQAEDLRIWHTRPSERMVADDDDEMDEDEEDVDKQSGEEYVAAYWVL 190
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKE 209
Y+DI+ + DG FDAA + +AA + ++P D + ++L ++K+P
Sbjct: 191 YIDIFFISFDGNPFDAAWAATLAALRDTKLPRGRYDPDRDMVL-------CTKKDP---- 239
Query: 210 KRKLTLGGIPFSLTCILH-----------KNYILADPTSEEESIMETLVTVVLDSSNQ-- 256
+ LT+ G+P + T + + ++L DP EES+ + +T+V+D +
Sbjct: 240 -KPLTITGMPVACTAAVFTGKETDRPTDGRFWLLVDPDRLEESLCDESITLVVDCQEEAM 298
Query: 257 -LVSLYKPGGAVLA 269
++S+ K GG V++
Sbjct: 299 RILSISKHGGVVVS 312
>gi|401427429|ref|XP_003878198.1| putative exosome-associated protein 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494445|emb|CBZ29747.1| putative exosome-associated protein 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 312
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 23/149 (15%)
Query: 121 KQLSDTISS--SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQ 178
+QL I + G +L +LS+ G+A W++ + + L DG L +L + +AA L
Sbjct: 153 RQLEGHIGTVLDGCFDLSQLSIYEGEACWVLKVSVLLLSFDGGLRAGSLHAVLAALHKLH 212
Query: 179 IPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL---HKNYILADP 235
+P L +G ++ E R++ L +P + T + ++AD
Sbjct: 213 LPRTRLPNGDVI------------------EGRQVQLSCMPVACTFGFLAGAQVRLVADT 254
Query: 236 TSEEESIMETLVTVVLDSSNQLVSLYKPG 264
T+ EE + + L+TV ++ + ++VS++ G
Sbjct: 255 TAIEEHVADGLITVAVNETERIVSVHHTG 283
>gi|413935084|gb|AFW69635.1| hypothetical protein ZEAMMB73_958064 [Zea mays]
Length = 121
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 26 RYFERH-LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS 84
++F R +A+ +R D R + R+ ++ G + A+GSA ++G+T ++A++K E+ PS
Sbjct: 9 KHFIRGGIAQDVRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATEIIASVKAELGKPS 68
Query: 85 LESPDEGCVSIDFHMPPICSPLVRPGRPAE 114
+ PD+G V+I P PL GR +E
Sbjct: 69 ILHPDKGKVAIFVDCSPTAEPLFE-GRGSE 97
>gi|324510452|gb|ADY44370.1| Exosome complex exonuclease RRP42 [Ascaris suum]
Length = 303
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 13/163 (7%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E +R D RSL R + G +A+ +GSA ++ ST +L +K E+ +E +
Sbjct: 19 EGMRADGRSLFDYRPIIVETGVLATTNGSARVRLASTDLLIGVKAELTV--VEDFEHYRN 76
Query: 94 SIDFHMPPICSPLVRP---GRPAEAAPVVAKQLSDTISSSGMI--NLKELSLVGGKAAWM 148
I+F + CS P GR E V D + + +LK+L ++ AW
Sbjct: 77 RINFFVD--CSANATPLFVGRGGEDLAVEVTSALDVAYDNPYVLPDLKKL-ILSPMHAWK 133
Query: 149 VYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL---DDGK 188
+Y+DI L+ G + DAA + AA N +I V + D+GK
Sbjct: 134 LYVDIVILECGGNILDAAGIGVKAALRNTEICNVIVRPADEGK 176
>gi|336267250|ref|XP_003348391.1| hypothetical protein SMAC_02888 [Sordaria macrospora k-hell]
gi|380092044|emb|CCC10312.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 357
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 129/329 (39%), Gaps = 89/329 (27%)
Query: 19 FRRLFPLRYFERHLAESIRP---DARSLSRARNTTISMGAVASADGSALAKIGSTTMLAA 75
F +L P Y +L + P + R+ AR I ++A A+GSAL + G TT++
Sbjct: 17 FAKLSPHPYLLTNLTDPENPCRTNGRAPHEARPIHIHTSSLAHANGSALVRTGDTTVVCG 76
Query: 76 IKMEVMT----PSLESPDEGCVS----------------IDFHMPPI-----CSPLVRPG 110
++ E++ P P E S D +P I C+P PG
Sbjct: 77 VRAEILPVTSIPQYR-PREPTYSEDNAEYEGSDLDELKDYDLLVPNIELATGCAPQFLPG 135
Query: 111 RPAEA-APVVAKQLSDTISSSGMINLKELSLVGG-------------------------- 143
P A ++ ++ + S +++ K L +
Sbjct: 136 VPPTTLAQTLSTRIYSLMHSCKVVDPKGLRVWYTPPKEPKEEGAMEVDEAQDDEEEEERK 195
Query: 144 ---KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEEN 200
KA W++Y+D+ + DG FDAA + +AA + ++P D + ++ +E
Sbjct: 196 PELKAYWVLYIDLLFVSFDGNPFDAAWAAVMAALRDTKLPAARWDPDREAVVCSRSEE-- 253
Query: 201 SEKEPVNKEKRKLTLGGIPFSLTCILH-----------------KNYILADPTSEEESIM 243
K L + G+P + T + +++IL DP EES+
Sbjct: 254 --------AKTALGVPGLPVACTATVFLEKEHGEDSGASAERKSRHWILLDPDRLEESLC 305
Query: 244 ETLVTVVLDSSNQ---LVSLYKPGGAVLA 269
+ VTVV+D S + + S+ K GG V+
Sbjct: 306 KETVTVVVDCSGEETKVKSIEKHGGTVIG 334
>gi|308486185|ref|XP_003105290.1| CRE-EXOS-7 protein [Caenorhabditis remanei]
gi|308256798|gb|EFP00751.1| CRE-EXOS-7 protein [Caenorhabditis remanei]
Length = 314
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 129/300 (43%), Gaps = 25/300 (8%)
Query: 13 EMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTT- 71
E+ + +LF + E + IR D R+ + R + G ++ +GS ++G TT
Sbjct: 2 EVHISDDEKLFLIHGVE----QDIRNDGRACADFRPMILERGVLSGTNGSCRVQLGQTTD 57
Query: 72 MLAAIKMEV--MTPSLESPDEGCVS--IDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTI 127
+LA IK+E+ P E + +S +DF + G A Q++ +
Sbjct: 58 VLAGIKLELEAYDPIAEKQPKQPMSFHVDFSANASSQFAGKGGDQYGEELSAAFQVAYSR 117
Query: 128 SSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL--- 184
S + NL + L G W +++DI L G++ DA L+ + A S+L+IP V +
Sbjct: 118 SLDIIPNLSKTQLAAG-YRWKIHVDISVLQWAGSVPDACSLAIIGALSDLEIPEVDVTPD 176
Query: 185 DDGKI-VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIM 243
D GK+ ++L + + E V KL + P LT L D + EEE +
Sbjct: 177 DGGKVSIVLKRPRIGGDVRDEEVPVAMWKLIVTSCPMLLTVSKIGTANLVDCSPEEECCI 236
Query: 244 ETLVTVVL----------DSSNQL-VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQIL 292
+ + + + D +N+ ++ K G L ++ D L + K L++ +
Sbjct: 237 RSQLLIGVAKNLESTPESDDANEYDITCVKQHGGGLLEMESIDDMTKLATRTAKGLYEAI 296
>gi|327287178|ref|XP_003228306.1| PREDICTED: exosome complex exonuclease RRP42-like [Anolis
carolinensis]
Length = 148
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ P L+
Sbjct: 13 YIIHGVQEDLRVDGRGCEDYRCIEVETDVVSNTSGSARVKLGHTDILVGVKAEMGVPKLD 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPAEA-APVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR E +A L + ++LK L +
Sbjct: 73 RPNEG--FLEFFVD--CSANATPEFEGRGGEELGTEIANTLYRIFDNESSVDLKLLCISP 128
Query: 143 GKAAWMVYLDI 153
+ W++Y+D+
Sbjct: 129 REHCWVLYVDV 139
>gi|71413321|ref|XP_808804.1| exosome-associated protein 2 [Trypanosoma cruzi strain CL Brener]
gi|70873085|gb|EAN86953.1| exosome-associated protein 2, putative [Trypanosoma cruzi]
Length = 278
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 30/188 (15%)
Query: 83 PSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSS--GMINLKELSL 140
P + P+EG ++++ P PG A +L+ + S+ ++L EL +
Sbjct: 80 PPPQHPEEGRLTVEVTAP------FFPGYSAFQIEGTLHELARFVRSTIISCLDLTELCV 133
Query: 141 VGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEEN 200
+ G+A W++ +++ ++ADG L A L +AVAA NL +P L G +V
Sbjct: 134 ISGEACWVLRVELIVMNADGGLRAATLHAAVAALHNLTLPKARLPSGDVV---------- 183
Query: 201 SEKEPVNKEKRKLTLGGIPFSLTCILHKN----YILADPTSEEESIMETLVTVVLDSSNQ 256
E R L IP + T L L D + EES+ + L+TVV+D ++
Sbjct: 184 --------ESRCLCFHRIPVAATIGLCGTAGSMQFLLDTNAAEESVADVLLTVVIDETDG 235
Query: 257 LVSLYKPG 264
+VS G
Sbjct: 236 IVSFLHHG 243
>gi|170086802|ref|XP_001874624.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649824|gb|EDR14065.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 345
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIG--------STTMLAAIKMEVMTPSLES 87
+R D RSL R+ + G A+GSA IG T +LAA K+EV ES
Sbjct: 24 LRTDGRSLHDFRSVALETGIAPLANGSARISIGQDPHDGSGGTEVLAAAKVEV-----ES 78
Query: 88 PDEGCVSIDFHMPPI-CSPLVRPGRPAEAAPVVAKQLSDTIS---SSGMINLKELSLVGG 143
+EG V + + CSP P A + ++ + S ++ K L ++ G
Sbjct: 79 VEEGGVDAGRVVCTVSCSPAAYPQLATAALEDLQYDMTTIVHQTLSHPSLHPKNLRILPG 138
Query: 144 KAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP 180
K +W++ LD+ L G ++DA ++A AA + +IP
Sbjct: 139 KKSWLLNLDLIVLADSGNIYDALFMAARAALWDTKIP 175
>gi|155368670|emb|CAO85913.1| exosome subunit EAP2 [Leishmania tarentolae]
Length = 312
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 21/135 (15%)
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVML 192
+LK+LS+ G+A W++ + + L DG L +L +A+AA L +P L +G ++
Sbjct: 167 FDLKQLSIYEGEACWVLKVSVLLLSFDGGLRAGSLHAALAALHKLHLPRTRLPNGDVI-- 224
Query: 193 PEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL---HKNYILADPTSEEESIMETLVTV 249
R++ L +P + T + ++AD T+ EE I + L+TV
Sbjct: 225 ----------------AGRQVQLSCMPVACTFGFLAGAQVQLVADTTAIEECITDGLITV 268
Query: 250 VLDSSNQLVSLYKPG 264
V++ + +++S++ G
Sbjct: 269 VVNEAERILSVHHTG 283
>gi|195334771|ref|XP_002034050.1| GM21652 [Drosophila sechellia]
gi|194126020|gb|EDW48063.1| GM21652 [Drosophila sechellia]
Length = 467
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D RS R + G V++A GSA ++ +T +L +K E+ P+
Sbjct: 13 YILHGVEDDFRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPNPL 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQ----LSDTISSSGMINLKELSLVG 142
+P+ G ++F + CS P +A++ L + S N + L L+
Sbjct: 73 TPEFG--KLEFFVD--CSANATPEFEGRGGSDLAQELILSLKNAYESPLAFNYRTLCLIP 128
Query: 143 GKAAWMVYLDIYCLDADGA-LFDAALLSAVA-------AFSNLQIPTVSLDDGKIVML 192
G+ W +Y+DI L+ + A L DA+++ V A +N+Q T L GK +L
Sbjct: 129 GQQCWKLYIDI--LNQNSARLLDASIVDGVIYCRVQRDAVTNVQGRTFDLRSGKYHLL 184
>gi|71663570|ref|XP_818776.1| exosome-associated protein 2 [Trypanosoma cruzi strain CL Brener]
gi|70884046|gb|EAN96925.1| exosome-associated protein 2, putative [Trypanosoma cruzi]
Length = 278
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 30/188 (15%)
Query: 83 PSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSS--GMINLKELSL 140
P + P+EG ++++ P PG A +L+ + S+ ++L EL +
Sbjct: 80 PPPQHPEEGRLTVEVTAP------FFPGYSAFQIEGTLHELARFVRSTIISCLDLTELCV 133
Query: 141 VGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEEN 200
+ G+A W++ +++ ++ADG L A L +AVAA NL +P L G +V
Sbjct: 134 ISGEACWVLRVELILMNADGGLRAATLHAAVAALHNLTLPKARLPSGDVV---------- 183
Query: 201 SEKEPVNKEKRKLTLGGIPFSLTCILHKN----YILADPTSEEESIMETLVTVVLDSSNQ 256
E R L IP + T L L D + EES+ + L+TVV+D ++
Sbjct: 184 --------ESRCLCFHRIPVAATIGLCGTAGSMQFLLDTNAAEESVADVLLTVVIDETDG 235
Query: 257 LVSLYKPG 264
+VS G
Sbjct: 236 IVSFLHHG 243
>gi|170577726|ref|XP_001894115.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
gi|158599437|gb|EDP37044.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
Length = 306
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 15/172 (8%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
E +R D R R + G +A+ +GSA +IGST +L +K E++ S D
Sbjct: 19 EGLRADGRGPLDYRPIIVQTGVLATTNGSARVQIGSTDLLIGVKAELI-----SVDTAVY 73
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMIN-----LKELSLVGGKAAWM 148
+ CS P A +LS + ++ N LK+L ++ AW
Sbjct: 74 RNRLNFFVDCSANATPLFAGRGGEEFADELSAALDAAYDNNYVLPDLKKL-ILSPMHAWK 132
Query: 149 VYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL---DDGKIVM-LPEEQ 196
+++DI L DG + DAA L AA + +I V + D+GK + LP++
Sbjct: 133 LFVDIVLLQCDGNVIDAAGLGVKAALKDTEISKVIVRPADEGKYTIDLPDDN 184
>gi|402219272|gb|EJT99346.1| ribosomal protein S5 domain 2-like protein [Dacryopinax sp. DJM-731
SS1]
Length = 329
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 124/313 (39%), Gaps = 57/313 (18%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEV--MTPS 84
Y L S R D RSL R T++ G V SA+GSA A++G T +L A+K++ +
Sbjct: 12 YLSTGLLLSERADGRSLLDYRPITLATGVVPSANGSARARVGDTDVLVAVKLDAVRLDDV 71
Query: 85 LESPDEGCVS-IDFHMPPICSPLVRPGRPAEAAPVVAKQLSD----TISSSGMINLKELS 139
++ DE F CSP P P + P ++ L+ +S ++ L++L
Sbjct: 72 VDGDDERQEGKAQFVCSVECSPSALPHLPTDTLPDLSSDLTTLLSYYLSLPSLLPLRQLL 131
Query: 140 LVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS---------------- 183
+V + AW + +D L G + D + AA +L++P
Sbjct: 132 IVPRRRAWQLSVDALLLSYGGNVTDVLFAAVRAALWDLRVPKTRNFVYDTPDAADSALGP 191
Query: 184 ------------LDDGKIVMLPE--EQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKN 229
LD + + PE + + E+ E V E R+L +P +T L
Sbjct: 192 GLGGFRIERAGVLDHARGLRRPEAADFELEDGSDEGVPLEGREL----LPVCITLNLLTP 247
Query: 230 YILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELH 289
D EE+ V + + S L L++ G + + EL
Sbjct: 248 IFYLDALPAEEACTPCRVILFVRPSGALCGLHRVGDSEIMPA---------------ELK 292
Query: 290 QILEEAIS-GMEI 301
Q+L EA+ G E+
Sbjct: 293 QVLHEAVKHGQEL 305
>gi|326489127|dbj|BAK01547.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 235
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 81/152 (53%), Gaps = 15/152 (9%)
Query: 133 INLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP--TVSLDDGKIV 190
++++ L +V GK W + +D++ LD G L DAA ++A+AA S + P TV DDG+ V
Sbjct: 21 VDMESLCVVAGKHVWSLRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGDDGQQV 80
Query: 191 MLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILH--KNYILADPTSEEESIMETLVT 248
+ +P + LT+ +P ++T N ++ DPT +EE++M +T
Sbjct: 81 TV----------HDPEVMDPLPLTIHHLPIAVTFAYFGDGNIMVIDPTYKEEAVMGGRMT 130
Query: 249 VVLDSSNQLVSLYKPGGAVLAYTSAVQDCIAL 280
++S+ + ++ K GG + +S + C+ +
Sbjct: 131 ATINSNGDVCAIQKAGGEGV-MSSVIMQCLRI 161
>gi|240849627|ref|NP_001155833.1| 3 exoribonuclease-like [Acyrthosiphon pisum]
gi|239791374|dbj|BAH72161.1| ACYPI010191 [Acyrthosiphon pisum]
Length = 400
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 101/239 (42%), Gaps = 24/239 (10%)
Query: 33 AESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGC 92
++ IR D R R I+ G G+ L +G T + A + E+ P+ P+EG
Sbjct: 19 SQKIRLDGRKKDEYRPLKIAYGLDW---GNCLVTLGCTRVFAQVSCEIYQPNNSRPNEGV 75
Query: 93 VSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLD 152
+ I S + + + L S I+L+ L ++ + W + +D
Sbjct: 76 LQI--------SAELAGDNKINDLTKINQVLERFYKDSKCIDLEALCIIAEEKVWKIKVD 127
Query: 153 IYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRK 212
+ L+ DG ++ +AA + + P V K+V+ +SE++P+
Sbjct: 128 LSVLNMDGNTLGCCSIATLAALMHFRYPDVVSTGEKVVVYS------SSERDPI-----P 176
Query: 213 LTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
L+L P S ++I+ DP+ E+ + + +++ ++ +++ + G A L+
Sbjct: 177 LSLHHHPVIASFAIFEKYDFIILDPSLLEDKVCDNKLSICFNNHSEMCGVDIEGCASLS 235
>gi|407425705|gb|EKF39504.1| ribosomal RNA processing protein 45, putative [Trypanosoma cruzi
marinkellei]
Length = 333
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/293 (21%), Positives = 125/293 (42%), Gaps = 46/293 (15%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSI 95
+RPD R + R + + S D S + + G T + AAI E++ P P G +
Sbjct: 31 LRPDQRGAQQLREVKVEF-PLLSRDLSCV-RCGGTIVTAAIACELVEPYPYRPKHG--ML 86
Query: 96 DFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYC 155
DF + C+ + A + A L I G+++ + L ++ G+ W + +D+
Sbjct: 87 DFSVRQPCTERDSSAKTAGLKKLTAF-LERLIKGGGVVDTESLCVLPGRRVWSISVDVTV 145
Query: 156 LDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTL 215
L+ +G + D A+ + VA + + P +++ +++ P E++PV L++
Sbjct: 146 LNDEGNVTDVAVWATVAVLLHYRRPELTIRGDSVIVHP------THERDPV-----PLSI 194
Query: 216 GGIP--FSLTCIL---HKNY-------------ILADPTSEEESIMETLVTVVLDSSNQL 257
P FS + +N ++ DPT E + + V V +++ Q+
Sbjct: 195 HHTPLCFSFAVTMAPGDRNKLARGRRDSQEALEVVVDPTFAEATAASSSVLVAVNAEGQV 254
Query: 258 VSLYKPGGAVLAYTSAVQDC-----------IALTRQRVKELHQILEEAISGM 299
S+ K G+ + + + + C ++L R + + +EA+ GM
Sbjct: 255 CSVSKSEGSCI-HLNELNHCMETASLLAPHILSLIRDAMAAHDKRRQEALKGM 306
>gi|400598639|gb|EJP66348.1| exosome complex exonuclease RRP43 [Beauveria bassiana ARSEF 2860]
Length = 337
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 134/313 (42%), Gaps = 76/313 (24%)
Query: 19 FRRLFPLRYFERHLAESIR--PDARSLSRA----RNTTISMGAVASADGSALAKIGSTTM 72
F +L P Y +L S + P ARS RA R +++ +++ A GS+L +IG TT
Sbjct: 11 FAKLSPHPYLLANLEPSSQDIPPARSNGRAPDEARTPEVNLSSLSHAHGSSLVRIGDTTA 70
Query: 73 LAAIKMEVM----TPSLESPDEGCVSIDFHM--PPI-----CSPLVRPGRPAEA-APVVA 120
+ ++ E + P+ + + D+ + P I P PG P A ++
Sbjct: 71 ICGVRAETILTTNIPNYRASNTESELRDYDLLVPNIELAIGSFPQNLPGGPPSTLAQTLS 130
Query: 121 KQLSDTISSSGMINLKELSLVGGK------------------------------AAWMVY 150
++ + SS ++N + + + A W++Y
Sbjct: 131 TRVYSALHSSKLLNAADFRIWHTQTADTTTADDDEMRDADAEDADEFSDERQVIAYWVLY 190
Query: 151 LDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLD-DGKIVMLPEEQKEENSEKEPVNKE 209
+DI+ + DG DAA + +AA + ++P D D ++V+ S K P
Sbjct: 191 IDIFFISLDGNQLDAAWAATLAALRDTKLPQARYDPDRELVIC--------SRKSP---- 238
Query: 210 KRKLTLGGIPFSLTCILH-----------KNYILADPTSEEESIMETLVTVVLD---SSN 255
+ L++ G P + T ++ K ++L DP + EES+ + +TV+ D +
Sbjct: 239 -KPLSVNGFPIACTAVVFTGKETDRPTEGKYWVLVDPDTLEESLCDETLTVLADCTGGAT 297
Query: 256 QLVSLYKPGGAVL 268
+++S+ K GG VL
Sbjct: 298 RILSISKHGGTVL 310
>gi|126459546|ref|YP_001055824.1| exosome complex exonuclease Rrp41 [Pyrobaculum calidifontis JCM
11548]
gi|254782536|sp|A3MUP1.1|ECX1_PYRCJ RecName: Full=Probable exosome complex exonuclease 1
gi|126249267|gb|ABO08358.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
calidifontis JCM 11548]
Length = 246
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 11/151 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK--MEVMTPSLESPD 89
L +R D R+ + R I +G V++ADGSA+ G+TT +AA+ E+ L PD
Sbjct: 9 LQNGLRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPD 68
Query: 90 EGCVSIDFHMPPICSPLVRPG-RPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWM 148
G + + +HM P + R P+ ++K L + + + M+ S +
Sbjct: 69 RGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRID------ 122
Query: 149 VYLDIYCLDADGALFDAALLSAVAAFSNLQI 179
V+++I L ADG+ A+L +A A ++ I
Sbjct: 123 VFIEI--LQADGSTRVASLTAASLALADAGI 151
>gi|268562221|ref|XP_002638538.1| C. briggsae CBR-EXOS-7 protein [Caenorhabditis briggsae]
Length = 300
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 129/302 (42%), Gaps = 35/302 (11%)
Query: 13 EMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTT- 71
E+ + +LF + E + IR D R+ + R + G ++ +GS ++G TT
Sbjct: 2 EVHISDDEKLFLISGVE----QDIRNDGRTCADFRTIVLERGVLSGTNGSCRVQLGQTTD 57
Query: 72 MLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSG 131
+LA IK+E+ + + E + FH+ ++ A Q + IS++
Sbjct: 58 VLAGIKLELESFDPAAEKEAKQPMSFHVD------FSANASSQFAGKGGDQYGEEISAAF 111
Query: 132 MI----------NLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPT 181
+ NL + L G W + +D+ L G++ DA L+ + A S+L++P
Sbjct: 112 QVAFSRSLDILPNLSKTLLAEG-YRWKINVDLSVLQWAGSVPDACSLAIIGALSDLEVPE 170
Query: 182 VSL---DDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSE 238
V + D GK+ ++ + + N ++ + P LT + L D + E
Sbjct: 171 VEVAPDDGGKVSIVLKRPRTGG------NMRDEEVPVAICPMLLTVSKIGSANLVDCSPE 224
Query: 239 EESIMET--LVTVV--LDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEE 294
EE + + L+ V L+ + ++ K G L ++QD L + L+Q +E+
Sbjct: 225 EECCIRSQLLIGVAKNLNVDDYDITCIKQHGGGLLEMESIQDMTELASKTAGGLYQAIEK 284
Query: 295 AI 296
+
Sbjct: 285 RL 286
>gi|167045225|gb|ABZ09885.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8O8]
Length = 245
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 10/148 (6%)
Query: 35 SIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAI--KMEVMTPSLESPDEGC 92
IR D R ++ R TI G + +ADGSA + G +LA + +V L +PD G
Sbjct: 15 GIRCDGRKVNETRKVTIKAGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHLSNPDTGI 74
Query: 93 VSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLD 152
+ + +HM P + P+ ++K + + + + ++ +++ V+L+
Sbjct: 75 LRVRYHMEPFSVDERKNPAPSRREIEISKVVKEALEPAVILEKFPRTVID------VFLE 128
Query: 153 IYCLDADGALFDAALLSAVAAFSNLQIP 180
+ L ADG AAL +A A ++ IP
Sbjct: 129 V--LQADGGTRCAALDAASVALADAGIP 154
>gi|405121361|gb|AFR96130.1| hypothetical protein CNAG_05811 [Cryptococcus neoformans var.
grubii H99]
Length = 332
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 79/153 (51%), Gaps = 7/153 (4%)
Query: 31 HLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKME---VMTPSLES 87
H + R DAR L +R IS G A+GSA K+G T +++ +K+E V+ ++
Sbjct: 22 HPSNPTRTDARPLFASRPIQISYGVFPQANGSAQVKLGGTEVVSGVKLEAIDVVGQQIQG 81
Query: 88 PDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAW 147
++ ++ + P P + P+ A ++ L+ ++S + ++ L ++ K +
Sbjct: 82 QEKWRTKVEVDVTPQAFPNIS--TPSLVA--LSTHLTSIVTSHFIPSIPALPILPNKKYF 137
Query: 148 MVYLDIYCLDADGALFDAALLSAVAAFSNLQIP 180
+L + L + G + A +L+A +AF++L++P
Sbjct: 138 QPHLHLTILSSSGNIPSALILAARSAFADLKVP 170
>gi|401403929|ref|XP_003881608.1| GF22565, related [Neospora caninum Liverpool]
gi|325116021|emb|CBZ51575.1| GF22565, related [Neospora caninum Liverpool]
Length = 552
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 89/213 (41%), Gaps = 43/213 (20%)
Query: 121 KQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP 180
+ L + SG+++ + L + GK AW V + + ++ DG L D ALL+A+ + +
Sbjct: 124 RMLRRLLKDSGVVDTEALCIQSGKWAWHVRVAVTVVEDDGNLRDTALLAALCGLMHFKKE 183
Query: 181 TVSLDDGKIVM--------LP-----------------------------EEQKEENSEK 203
V+ D + V LP E + EE++
Sbjct: 184 AVTFDGDQAVFHRAADREPLPLCIHHLPILVSFAFLPTRGSLLNLSAPKGEGEDEEDALP 243
Query: 204 EPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
EP + + T G +Y++ DP++ EE+ + V++ + + +YK
Sbjct: 244 EPYSSQ----TAGKREDERDDEDDLDYVV-DPSALEEATLPGKVSIAVGKQGDICGMYKV 298
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG VL ++ ++ L + KEL I++ A+
Sbjct: 299 GGPVLRFSHLIK-LTNLATAKAKELLSIVQAAV 330
>gi|18313178|ref|NP_559845.1| exosome complex exonuclease Rrp41 [Pyrobaculum aerophilum str. IM2]
gi|29336868|sp|Q8ZVM9.1|ECX1_PYRAE RecName: Full=Probable exosome complex exonuclease 1
gi|18160692|gb|AAL64027.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
Length = 246
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK--MEVMTPSLESPD 89
L +R D R+ + R I++G V++ADGSA+ G+TT +AA+ E+ L PD
Sbjct: 9 LQNGVRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPD 68
Query: 90 EGCVSIDFHMPPICS 104
G + + +HM P +
Sbjct: 69 RGVMRVRYHMAPFST 83
>gi|407848156|gb|EKG03619.1| exosome-associated protein 2, putative,3' exoribonuclease, putative
[Trypanosoma cruzi]
Length = 278
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 120/272 (44%), Gaps = 37/272 (13%)
Query: 1 MGLPNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISM-----GA 55
M LP A+ +E+ +F++ + R L +S R D R+ R I
Sbjct: 1 MSLPPAT----GAVELSSFKQ-----HVIRLLTQSKRLDGRAFDSIRVPHILYENRQDTK 51
Query: 56 VASADGSALAKIGSTTMLAAIKMEVMTPSL-ESPDEGCVSIDFHMPPICSPLVRPGRPAE 114
+ S L + T + I V P + P+EG ++++ P PG A
Sbjct: 52 INRVLASTLYTDDTGTCVNCIVTGVFGPPPPKHPEEGRLTVEVTAP------FFPGYSAF 105
Query: 115 AAPVVAKQLSDTISSS--GMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVA 172
+L+ + S+ ++L EL ++ G+A W++ +++ ++ADG L A L +AVA
Sbjct: 106 QIEGTLHELARFVRSTIISCLDLTELCVISGEACWVLRVELIVMNADGGLRAATLHAAVA 165
Query: 173 AFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYIL 232
A NL +P L G +V E K + PV + L G S+ +L
Sbjct: 166 ALHNLTLPKARLPSGDVV----ESKCLCFHRIPVAA---TIGLCGTADSMQFLL------ 212
Query: 233 ADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
D + EES+ + L+TVV+D ++ +VS G
Sbjct: 213 -DTNAAEESVADVLLTVVIDEADGIVSFLHHG 243
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.131 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,404,698,582
Number of Sequences: 23463169
Number of extensions: 169496035
Number of successful extensions: 595255
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 1194
Number of HSP's that attempted gapping in prelim test: 592706
Number of HSP's gapped (non-prelim): 2376
length of query: 302
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 161
effective length of database: 9,050,888,538
effective search space: 1457193054618
effective search space used: 1457193054618
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)