BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022140
(302 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96B26|EXOS8_HUMAN Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1
Length = 276
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/284 (34%), Positives = 166/284 (58%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E PS ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK W++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 124 LCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +T+V+D +
Sbjct: 172 EETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E I M+
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 274
>sp|Q9D753|EXOS8_MOUSE Exosome complex component RRP43 OS=Mus musculus GN=Exosc8 PE=2 SV=1
Length = 276
Score = 193 bits (491), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/283 (35%), Positives = 164/283 (57%), Gaps = 14/283 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P +++PD G V + +PP+CS R G P E A V ++ ++D + +S +I ++
Sbjct: 64 AEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CLD DG + DA + +AA N+Q+P V+++
Sbjct: 124 LCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +TVV D +
Sbjct: 172 EETALAEVNLKKKSYLNVRTNPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGK 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299
L L+KPGG+ L + +QDC++ R KE+ ++L+E I M
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVSKLLDEVIQSM 273
>sp|Q2KHU3|EXOS8_BOVIN Exosome complex component RRP43 OS=Bos taurus GN=EXOSC8 PE=2 SV=1
Length = 276
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 163/284 (57%), Gaps = 14/284 (4%)
Query: 18 AFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK 77
F+ + PL Y+ R L E+ RPD R L R TT+++G++ +ADGSAL K+G+TT++ IK
Sbjct: 4 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIK 63
Query: 78 MEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKE 137
E P ++PD+G V + + P+CS R G P E A V ++ ++D I +S +I ++
Sbjct: 64 AEFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 123
Query: 138 LSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQK 197
L + GK AW++Y D+ CL+ DG + DA + +AA N+Q+P V+++
Sbjct: 124 LCISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTIN------------ 171
Query: 198 EENSEKEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
EE + E K+K L + P + + + ++ DPT EEE + +TVV+D +
Sbjct: 172 EETALAEVNLKKKSCLNIRTHPVATSFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEEGR 231
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L L+KPGG+ L + +QDC++ R KE+ ++++E M+
Sbjct: 232 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVFKSMK 274
>sp|Q10205|RRP43_SCHPO Exosome complex component rrp43 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp43 PE=3 SV=1
Length = 270
Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 142/268 (52%), Gaps = 17/268 (6%)
Query: 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM 78
F+++ P +Y L + +R D RS+S R I+ +++A+GSA+ + G + IK
Sbjct: 17 FKKITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKA 76
Query: 79 EVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKEL 138
E+ P SP+EG + + + P+CS +PG P++ A VV+++L T+ S +INL+ L
Sbjct: 77 EIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSL 136
Query: 139 SLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDG--KIVMLPEEQ 196
+ KAAW++Y DI CL+ DG+ FD A + AA +++PT D+ +++
Sbjct: 137 CIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPTAVWDEDLERVIC----- 191
Query: 197 KEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256
+ R + L S + + + +LADPT EEE + +T++L+SS
Sbjct: 192 ---------ASTLTRPVQLSTEVRSFSWSVFDDKLLADPTDEEEDLSTEFLTIMLNSSKN 242
Query: 257 LVSLYKPGGAVLAYTSAVQDCIALTRQR 284
+V + K GG + ++ CI + R +
Sbjct: 243 IVKIIKLGGTHIQ-PLLLKKCIEVARSK 269
>sp|Q8TYC2|ECX2_METKA Probable exosome complex exonuclease 2 OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0380 PE=3 SV=1
Length = 267
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 140/255 (54%), Gaps = 17/255 (6%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R R + G ++ A+GSAL ++G+T ++ +K+EV P +SP+EG ++++
Sbjct: 23 RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ P PG P E A +++ + I S MI+L+EL + G+ W+ ++DI+ L
Sbjct: 83 AELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTFVDIHVL 142
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG LFDA+++ +V+A S ++P + D ++ E EE++E L +
Sbjct: 143 DHDGNLFDASMIGSVSALSITEVPKAEVVDDEV-----EVMEEDTE---------PLAIN 188
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSA-VQ 275
P S+T Y+L DP EEE IM+T +TV + S ++ ++ K G + + ++
Sbjct: 189 DFPISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK--GELGDFPEHLLE 246
Query: 276 DCIALTRQRVKELHQ 290
D I L ++ +E+ +
Sbjct: 247 DAIDLATKKAEEVRR 261
>sp|Q8U0M0|ECX2_PYRFU Probable exosome complex exonuclease 2 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1567 PE=3 SV=1
Length = 277
Score = 130 bits (328), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 139/272 (51%), Gaps = 18/272 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y L E R D R R + +G + A+GSAL K+G+T +L IK + P +
Sbjct: 14 YILNLLKEKKRIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGIKATLGEPFPD 73
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+P+ G ++ + + P+ SP PG P E A +A+ + I S +NL+++ + GK
Sbjct: 74 TPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESRALNLEKMVIAPGKIV 133
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD--GKIVMLPEEQKEENSEKE 204
+V++D++ LD DG L DA + A+AA N ++P V ++ G++ +L EKE
Sbjct: 134 RVVFIDVHVLDHDGNLMDAIGIGAIAALLNARVPKVLYNEETGEVEIL--------EEKE 185
Query: 205 PVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
P+ EK IP S+T NY++ DPT EEE IM+ +T+ D + + ++ K
Sbjct: 186 PLPVEK-------IPISVTFAKIGNYLVVDPTLEEEQIMDGRLTITTDETGHISAVQKSE 238
Query: 265 GAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
G V + ++ +E+ +I+ A+
Sbjct: 239 GGAFKL-EEVMYAVETAFKKAEEIRKIILNAL 269
>sp|C5A2B8|ECX2_THEGJ Probable exosome complex exonuclease 2 OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_2035 PE=3 SV=1
Length = 273
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 136/268 (50%), Gaps = 18/268 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D RS R+ I G + A+GSA ++G T +L IK++V P + PD G
Sbjct: 19 LKEGKRIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEPFPDLPDRG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P+ SP PG P E A +A+ + I S + L++L +V GK +V++
Sbjct: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVFI 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD--GKIVMLPEEQKEENSEKEPVNKE 209
D++ LD DG LFDA L+A+AA +IP V ++ G+I+ L E EP
Sbjct: 139 DVHVLDHDGNLFDATGLAAMAALMTTKIPKVEYNEETGEIIKL--------DEYEP---- 186
Query: 210 KRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
L + +P +T + I+ DP +EE++M++ +T+ D + + ++ K G
Sbjct: 187 ---LPVKHVPIPVTFAKIGSSIIVDPNLDEETVMDSRLTITTDETGHISAVQKGEGGSFK 243
Query: 270 YTSAVQDCIALTRQRVKELHQILEEAIS 297
V I ++ EL +IL EA+
Sbjct: 244 L-EEVMYAIDTALKKADELRKILLEAVG 270
>sp|O59224|ECX2_PYRHO Probable exosome complex exonuclease 2 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1548 PE=3 SV=1
Length = 274
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 135/266 (50%), Gaps = 14/266 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D R R I +G + A+GSAL K+GST +L IK + P ++P+ G
Sbjct: 19 LKEGKRIDDRGFEDYRPIEIEVGIIEKAEGSALVKLGSTQVLVGIKTTLGEPFPDTPNMG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P+ SP PG P E A +A+ I S +NL+++ +V GK +V++
Sbjct: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVTDRGIRESRALNLEKMVIVPGKIVRVVFI 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ LD DG L DA ++++AA N ++P V E EE E E + +EK
Sbjct: 139 DVHVLDHDGNLMDAIGIASIAALLNAKVPKV------------EYNEETGEVE-ILEEKE 185
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
L + IP +T N ++ DP+ EEE +M+ +TV D + + ++ K G
Sbjct: 186 PLPVERIPIPVTFAKIGNILVVDPSLEEELVMDGRLTVTTDETGHISAVQKGEGGAFKL- 244
Query: 272 SAVQDCIALTRQRVKELHQILEEAIS 297
V + ++ +E+ +I+ EAI
Sbjct: 245 EEVMYAVETAFKKAEEIRKIVLEAIK 270
>sp|Q9YC05|ECX2_AERPE Probable exosome complex exonuclease 2 OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_1445 PE=3 SV=1
Length = 276
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 137/267 (51%), Gaps = 15/267 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L + RP R L RN I G + A+GSAL K+G T ++A +K V P ++P++G
Sbjct: 23 LRKGWRPGDRDLKTPRNVKIETGIIEKAEGSALVKLGKTQVIAGVKAGVGAPFKDTPNQG 82
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+++ P+ SP+ PG P E A +A+ + ++ G ++L+ L + G+ W++++
Sbjct: 83 VLTVHAEFVPLASPVFEPGPPDENAIELARVVDRSLREVGAVDLESLVIRPGEKVWVLWV 142
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD-GKIVMLPEEQKEENSEKEPVNKEK 210
D+Y +D DG LFDA++L+ +A ++P + G+I++ E + EE
Sbjct: 143 DLYIIDHDGNLFDASMLATMAVLLTARLPRYEESETGEIIISKEGEGEE----------- 191
Query: 211 RKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAY 270
L + ++T YI+ DP EEE++ + + +D + ++V L K G L
Sbjct: 192 --LKVKTRVVTVTTAKIDRYIVVDPNIEEEAVSDVRLVTAVDENGRIVGLQKTGMGSLT- 248
Query: 271 TSAVQDCIALTRQRVKELHQILEEAIS 297
+ ++ I + + K + LEEAI
Sbjct: 249 EADIETMIGYSLEASKVYFKALEEAIK 275
>sp|Q0W2Y7|ECX2_UNCMA Probable exosome complex exonuclease 2 OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_09920 PE=3 SV=1
Length = 260
Score = 121 bits (304), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 131/287 (45%), Gaps = 31/287 (10%)
Query: 7 SEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAK 66
SED+ +E++ D Y + R D R R ++ G + A+GSA K
Sbjct: 2 SEDVIAEIKRD---------YIYSLANQGDRADGRKFDEFRAISVETGVINKAEGSARVK 52
Query: 67 IGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDT 126
IG + ++ +K++ P ++PD G + + + P+ SP G P E A +A+ +
Sbjct: 53 IGDSQVVVGVKIQPGEPFPDTPDSGVIITNLELVPLASPTFESGPPREDAIELARVVDRG 112
Query: 127 ISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD 186
+ SG I+L +L + G+ WMV++D++ LD DG L DAA L A+AA +IP
Sbjct: 113 VRESGAIDLSKLCIESGQKVWMVFIDVHVLDHDGNLMDAASLGAIAALKATKIPNSKFGL 172
Query: 187 GKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETL 246
G+ V LP L +P +T + I+ DP+ +EES+
Sbjct: 173 GEDVKLP---------------------LNDVPIGVTAVNIGGAIMLDPSLDEESVAPCK 211
Query: 247 VTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILE 293
+TV+ + + + K G L + I L +++ L + LE
Sbjct: 212 LTVITNKEGAISGMQKSGVGTLT-PDQINHIIRLAKEKANVLREKLE 257
>sp|B6YSE7|ECX2_THEON Probable exosome complex exonuclease 2 OS=Thermococcus onnurineus
(strain NA1) GN=TON_0031 PE=3 SV=1
Length = 272
Score = 121 bits (304), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 137/268 (51%), Gaps = 18/268 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D RSL R+ I + + A+GSA K+G+T +L IK+++ P + P++G
Sbjct: 19 LKEGKRVDGRSLEDYRDLEIKINVIEKAEGSAWVKLGNTQVLVGIKVDMGEPFPDLPEKG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P+ SP PG P E A +A+ + I SG + L++L +V GK +V++
Sbjct: 79 VITTNVELVPLASPSFEPGPPDERAIELARVVDRGIRESGAVELEKLVIVPGKLVRVVFI 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD--GKIVMLPEEQKEENSEKEPVNKE 209
D++ LD DG L DA+ + A+AA + ++P V D+ G++ +L E E PV+K
Sbjct: 139 DVHVLDHDGNLLDASGIGAIAALMSAKMPKVVYDEESGEVQILDE------YEPLPVSK- 191
Query: 210 KRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLA 269
+P +T +L DP +EE +M+ +T+ D + + S+ K G
Sbjct: 192 --------MPIPVTIAKVGGNLLVDPNLDEELVMDGRITITTDENGMISSVQKSEGGSFK 243
Query: 270 YTSAVQDCIALTRQRVKELHQILEEAIS 297
V I L + E+ + + EA+
Sbjct: 244 LEE-VMYAIDLALTKAAEIREKVLEAVG 270
>sp|Q8ZVN0|ECX2_PYRAE Probable exosome complex exonuclease 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=PAE2206 PE=3 SV=1
Length = 274
Score = 121 bits (303), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 126/237 (53%), Gaps = 13/237 (5%)
Query: 29 ERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESP 88
R LA R D R + RN I++G V +ADGSA K+G T ++A +K+ + P ++P
Sbjct: 21 RRLLATKYRVDGRGPEQTRNVEINVGVVKTADGSAEVKLGKTHVVAGVKVGLGQPFPDAP 80
Query: 89 DEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWM 148
DEG + ++ + P SP G P E A +A+ + I G ++ K+L++ GGK A++
Sbjct: 81 DEGVLVVNAEVLPHASPYTEVGPPDEFAIELARVVDRGIRHCGYVDFKKLAVEGGK-AYV 139
Query: 149 VYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNK 208
+++D+Y ++ DG L D A L++VAA N Q+P V D+ +V L N PV+
Sbjct: 140 LWIDLYVINDDGNLIDVANLASVAALKNTQLPVVVKDEAGVVKL----DRNNKAPLPVDI 195
Query: 209 EKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265
K P +++ N + DPT EEE ++ +T S +++V+ K G
Sbjct: 196 SK-------APIAVSVGKIGNVLFLDPTFEEELSLDGRITFTF-SEDKIVAAQKTLG 244
>sp|O26778|ECX2_METTH Probable exosome complex exonuclease 2 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_682 PE=1 SV=1
Length = 271
Score = 120 bits (302), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 146/263 (55%), Gaps = 19/263 (7%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D RSL R+ +I G ++ A+GS+ K+G+T ++ +K ++ P ++P+ G + +
Sbjct: 25 RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTN 84
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ SP PG P E + +++ + I S MI+L++L ++ G WM++LD++ +
Sbjct: 85 SELLPMASPTFEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHII 144
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG LFDAA+L+ VAA + +IP ++DG++V+ E + PVN++
Sbjct: 145 DYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVVI-----NREKMQPLPVNRK------- 192
Query: 217 GIPFSLTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAV 274
+L C K N I+ DP+ EEE I+ +++ + + ++ K G L +
Sbjct: 193 ----ALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTRDDVL 248
Query: 275 QDCIALTRQRVKELHQILEEAIS 297
+ +++ ++V +L + L+++++
Sbjct: 249 K-AVSIAVEKVPQLIEYLDKSMT 270
>sp|Q8TGX5|ECX2_METAC Probable exosome complex exonuclease 2 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_1776 PE=3 SV=1
Length = 266
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 134/274 (48%), Gaps = 22/274 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D R R+ + + A+GSA +G+T +L +K++ TP +
Sbjct: 15 YIYNLMIKGKRQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQVLVGVKLQTGTPFPD 74
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
S DEG + + + PI SP PG P E A +A+ + I SG I++K+L + G++
Sbjct: 75 SQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRGIRESGAIDIKKLCITVGESV 134
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W+V++D++ L+ DG + DA+ L+A+AA M+P EQ+
Sbjct: 135 WIVFIDVHVLNDDGNIIDASCLAAIAALMT-------------TMVPNEQQGLG------ 175
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
E L + +P +T + ++ DP+ +EE++ ET +T+V S + + K G +
Sbjct: 176 --EDVPLAMKEMPVGITIAKIGSKLMVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMGIS 233
Query: 267 VLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300
L + + + I L ++ EL + E ++ E
Sbjct: 234 PLT-EAELFEAIDLALEKAAELRGLYLEGLAKSE 266
>sp|C3NHC2|ECX2_SULIN Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=YN1551_1441 PE=3
SV=1
Length = 275
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 23/233 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L+ R +I++ ADGSAL K+G+T +LA K+E+ P ++P++G + ++
Sbjct: 28 RQDGRKLTDYRPLSITLNYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVN 87
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ PG P E A +A+ + ++ S ++L +L + GK+ W V+LD+Y L
Sbjct: 88 VELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVL 147
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G + DA L++VAA N ++ V E++S VNK + +G
Sbjct: 148 DYGGNVLDACTLASVAALYNTKVYKV---------------EQDSNGFRVNKNE---VVG 189
Query: 217 GIPFS---LTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+P + +T + K Y++ DP +EESIM+T V+ ++V + K G
Sbjct: 190 KLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSG 242
>sp|C3MVG5|ECX2_SULIM Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=M1425_1407 PE=3 SV=1
Length = 275
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 23/233 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L+ R +I++ ADGSAL K+G+T +LA K+E+ P ++P++G + ++
Sbjct: 28 RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVN 87
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ PG P E A +A+ + ++ S ++L +L + GK+ W V+LD+Y L
Sbjct: 88 VELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVL 147
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G + DA L++VAA N ++ V E++S VNK + +G
Sbjct: 148 DYGGNVLDACTLASVAALHNTKVYKV---------------EQDSNGFRVNKNE---VVG 189
Query: 217 GIPFS---LTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+P + +T + K Y++ DP +EESIM+T V+ ++V + K G
Sbjct: 190 KLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSG 242
>sp|C3N5R4|ECX2_SULIA Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain M.16.27) GN=M1627_1457 PE=3 SV=1
Length = 275
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 23/233 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L+ R +I++ ADGSAL K+G+T +LA K+E+ P ++P++G + ++
Sbjct: 28 RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVN 87
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ PG P E A +A+ + ++ S ++L +L + GK+ W V+LD+Y L
Sbjct: 88 VELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVL 147
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G + DA L++VAA N ++ V E++S VNK + +G
Sbjct: 148 DYGGNVLDACTLASVAALHNTKVYKV---------------EQDSNGFRVNKNE---VVG 189
Query: 217 GIPFS---LTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+P + +T + K Y++ DP +EESIM+T V+ ++V + K G
Sbjct: 190 KLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSG 242
>sp|C3NED0|ECX2_SULIY Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=YG5714_1402 PE=3
SV=1
Length = 275
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 23/233 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L+ R +I++ ADGSAL K+G+T +LA K+E+ P ++P++G + ++
Sbjct: 28 RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVN 87
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ PG P E A +A+ + ++ S ++L +L + GK+ W V+LD+Y L
Sbjct: 88 VELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVL 147
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G + DA L++VAA N ++ V E++S VNK + +G
Sbjct: 148 DYGGNVLDACTLASVAALYNTKVYKV---------------EQDSNGFRVNKNE---VVG 189
Query: 217 GIPFS---LTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+P + +T + K Y++ DP +EESIM+T V+ ++V + K G
Sbjct: 190 KLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSG 242
>sp|C3MQ47|ECX2_SULIL Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=LS215_1502 PE=3 SV=1
Length = 275
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 23/233 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L+ R +I++ ADGSAL K+G+T +LA K+E+ P ++P++G + ++
Sbjct: 28 RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVN 87
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ PG P E A +A+ + ++ S ++L +L + GK+ W V+LD+Y L
Sbjct: 88 VELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVL 147
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G + DA L++VAA N ++ V E++S VNK + +G
Sbjct: 148 DYGGNVLDACTLASVAALYNTKVYKV---------------EQDSNGFRVNKNE---VVG 189
Query: 217 GIPFS---LTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+P + +T + K Y++ DP +EESIM+T V+ ++V + K G
Sbjct: 190 KLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSG 242
>sp|C4KHE3|ECX2_SULIK Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=M164_1401 PE=3 SV=1
Length = 275
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 23/233 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R L+ R +I++ ADGSAL K+G+T +LA K+E+ P ++P++G + ++
Sbjct: 28 RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVN 87
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ P+ PG P E A +A+ + ++ S ++L +L + GK+ W V+LD+Y L
Sbjct: 88 VELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVL 147
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D G + DA L++VAA N ++ V E++S VNK + +G
Sbjct: 148 DYGGNVLDACTLASVAALYNTKVYKV---------------EQDSNGFRVNKNE---VVG 189
Query: 217 GIPFS---LTCILHK--NYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+P + +T + K Y++ DP +EESIM+T V+ ++V + K G
Sbjct: 190 KLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSG 242
>sp|O29756|ECX2_ARCFU Probable exosome complex exonuclease 2 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=AF_0494 PE=1 SV=1
Length = 259
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 132/268 (49%), Gaps = 27/268 (10%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y L ++ R D R R I + A+GSAL K+G T ++ +KM+ P +
Sbjct: 13 YVLSKLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEPYPD 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
+PD G + ++ + P+ SP PG P E + +A+ + I S ++L +L + G+
Sbjct: 73 TPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKV 132
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W+V++DI+ LD DG L DA+ L+A+AA N ++P D G+ +LP
Sbjct: 133 WIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGEDYLLP------------- 179
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA 266
+ +P S+T ++ N L DP+ EE S+ +T +T+ D + +V++ K GG
Sbjct: 180 --------VRDLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITTDKDDNVVAMQKSGGY 231
Query: 267 VL------AYTSAVQDCIALTRQRVKEL 288
+L +C R++ KE+
Sbjct: 232 LLDEKLFDELLDVSINCARKLREKFKEI 259
>sp|Q5JIR7|ECX2_PYRKO Probable exosome complex exonuclease 2 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1633 PE=3
SV=1
Length = 272
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 13/231 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D RS R+ I + + A+GSA ++G T +L IK E+ P + PD G
Sbjct: 19 LREGKRIDGRSFEDYRDLEIKVNVIEKAEGSAWVRLGDTQVLVGIKAELGEPFPDLPDRG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P+ SP PG P E A +A+ + I S ++L++L +V GK ++++
Sbjct: 79 VITTNVELVPLASPTFEPGPPDENAIELARVVDRGIRESQAVDLEKLVIVPGKLVRVIFI 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ LD G L DA+ + A+AA + ++P V+ + EE E E ++ E
Sbjct: 139 DVHVLDHGGNLLDASGIGAIAALLSTKLPKVNYN------------EETGEVEILD-EYE 185
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYK 262
L + +P +T N I+ DP+ +EE +M+ +T+ D + + + K
Sbjct: 186 PLPVNHVPIPVTFAKIGNSIVVDPSLDEERVMDGRLTITTDETGHISAAQK 236
>sp|Q8PTT7|ECX2_METMA Probable exosome complex exonuclease 2 OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2624 PE=3 SV=1
Length = 266
Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 118/238 (49%), Gaps = 21/238 (8%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + + R D R R + ++ A+GSA +G+T +L +K++ TP +
Sbjct: 15 YIYNLMIKDKRQDGRGFKDFRELKLETNVISKAEGSAKVTLGNTQVLVGVKLQTGTPFPD 74
Query: 87 SPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAA 146
S DEG + + + PI SP PG P E A +A+ + I SG I++K+L + G++
Sbjct: 75 SQDEGVIITNLELNPIASPEFEPGPPREDAIEMARVVDRGIRESGAIDIKKLCITVGESV 134
Query: 147 WMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPV 206
W+V++D++ L+ DG + DA+ L+A+AA M+P EQ+
Sbjct: 135 WIVFIDVHILNNDGNIIDASCLAAIAALMT-------------TMVPNEQQGLG------ 175
Query: 207 NKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
E L + +P +T + ++ DP+ +EE++ ET +T+V S + + K G
Sbjct: 176 --ENVPLAMKEMPVGITLAKIGSKLMVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMG 231
>sp|Q9UXC0|ECX2_SULSO Probable exosome complex exonuclease 2 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=SSO0732 PE=1 SV=1
Length = 275
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 121/233 (51%), Gaps = 17/233 (7%)
Query: 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93
+ IR D R L+ R +I++ ADGSAL K+G+T +LA K+E+ P ++P++G +
Sbjct: 25 KGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNL 84
Query: 94 SIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDI 153
++ + P+ PG P E A +A+ + ++ S ++L +L + GK+ W V+LD+
Sbjct: 85 IVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDV 144
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEK--R 211
Y LD G + DA L++VAA N ++ V E++S VNK +
Sbjct: 145 YVLDYGGNVLDACTLASVAALYNTKVYKV---------------EQHSNGISVNKNEVVG 189
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
KL L +++ Y++ DP +EESIM+ ++ ++V + K G
Sbjct: 190 KLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSG 242
>sp|Q975G9|ECX2_SULTO Probable exosome complex exonuclease 2 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_04420 PE=3 SV=1
Length = 275
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 133/266 (50%), Gaps = 14/266 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L IR D R S R ++++ A+GSAL K+G T +LA +K+E P ++P++G
Sbjct: 23 LERGIRLDGRKNSDYRPISVTLNYAKKAEGSALVKLGDTMVLAGVKLEEEEPFPDTPNQG 82
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
+ ++ + P+ PG P E A +A+ + ++ S ++L +L ++ GK W ++
Sbjct: 83 NLVVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKAVDLSKLVIIPGKKVWTAWV 142
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D+Y LD G + DA L+AVAA N ++P V ++ + ++ EE+ + PV
Sbjct: 143 DVYVLDYGGNVLDACTLAAVAALYNTKLPKVEIEGDNVKIIKEEKTDVTPIAYPV----- 197
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
++T Y++ DP+ +EESI + ++ ++V + K L+
Sbjct: 198 --------VTVTVAKIGKYLVVDPSLDEESIADVKISFSYVQDGRIVGMQKSNFGSLSLQ 249
Query: 272 SAVQDCIALTRQRVKELHQILEEAIS 297
V +L R ++L + L++ I+
Sbjct: 250 E-VDVAESLARSASQKLFEELKKQIN 274
>sp|Q9V118|ECX2_PYRAB Probable exosome complex exonuclease 2 OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=PYRAB06110 PE=1 SV=1
Length = 274
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 135/265 (50%), Gaps = 14/265 (5%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEG 91
L E R D R R I +G + A+GSAL K+GST +L IK + P ++P+ G
Sbjct: 19 LKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMG 78
Query: 92 CVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYL 151
++ + + P+ SP PG P E A +A+ + I S +NL+++ +V GK +V++
Sbjct: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFI 138
Query: 152 DIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKR 211
D++ LD DG L DA ++A+AA N ++P V + EE E E ++ E
Sbjct: 139 DVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYN------------EETGEVETLD-ETE 185
Query: 212 KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
L + IP +T N ++ DP+ +EE +M+ +T+ D + + ++ K G
Sbjct: 186 PLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKL- 244
Query: 272 SAVQDCIALTRQRVKELHQILEEAI 296
V + ++ +E+ +++ EA+
Sbjct: 245 EEVMYAVETAFKKAEEIRKLILEAV 269
>sp|Q9HIP1|ECX2_THEAC Probable exosome complex exonuclease 2 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1294 PE=3 SV=2
Length = 260
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 124/255 (48%), Gaps = 25/255 (9%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R R TI + A+GSA +G+T ++A +K+E P ++PD+G ++ +
Sbjct: 26 RIDGRLPDEFRELTIIENYIPRANGSAYVALGNTRVVAGVKIEAGEPFPDTPDQGVLTTN 85
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ PI P G P + A V++ + I S MI+ ++L + GK W+V+LDI L
Sbjct: 86 VELLPIAFPSFEAGPPNDLAIEVSRVVDRGIRESKMISPEKLVIEQGKKVWIVFLDINVL 145
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG L DA+ ++AVAA N +P + KE E KL +
Sbjct: 146 DYDGNLIDASTIAAVAALRNAVVP--------------------ASKE--GGEDFKLPVS 183
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT-SAVQ 275
P S+T + + ++ DP+ EE+ I +TV + ++ K G + A+T V+
Sbjct: 184 STPISVTMVKIGDTLVCDPSLEEDQICGGRITVTTTEDGHIRAMQK--GEIGAFTVEDVK 241
Query: 276 DCIALTRQRVKELHQ 290
+ ++ + K+L +
Sbjct: 242 KAVKMSLEVGKKLRE 256
>sp|Q97BZ4|ECX2_THEVO Probable exosome complex exonuclease 2 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=TV0311 PE=3 SV=1
Length = 260
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 110/235 (46%), Gaps = 24/235 (10%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSID 96
R D R R TI V A+GSA +G T ++A +K+E P ++PD+G ++ +
Sbjct: 26 RIDGRLPDEFREITIIENYVPRANGSAYVALGKTRVVAGVKIEAGEPFPDTPDQGVLTTN 85
Query: 97 FHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCL 156
+ PI P G P + A V++ + I S MI+ +L + GK W+V+LDI L
Sbjct: 86 VELLPIAFPSFEAGPPNDLAIEVSRVVDRGIRESKMISPDKLVIEQGKKVWIVFLDINVL 145
Query: 157 DADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLG 216
D DG L DA ++AV+A N +P S + G E KL +
Sbjct: 146 DYDGNLIDACTIAAVSALRNAIVPA-SREGG---------------------EDFKLPVV 183
Query: 217 GIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYT 271
P S+T + + ++ DP+ EE+ I +TV + ++ K G + +T
Sbjct: 184 NTPISVTMVKIGDTLVCDPSLEEDQICGGRITVTTTEDGHIRAMQK--GEIGVFT 236
>sp|Q9JHI7|EXOS9_MOUSE Exosome complex component RRP45 OS=Mus musculus GN=Exosc9 PE=2 SV=1
Length = 438
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L V C + +V E+ +++++A+
Sbjct: 238 GGIML-LKDQVFRCSKIAGVKVAEITELIQKAL 269
>sp|Q3SWZ4|EXOS9_BOVIN Exosome complex component RRP45 OS=Bos taurus GN=EXOSC9 PE=2 SV=1
Length = 440
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 135/273 (49%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIKISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTLE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP+ EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++++A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVVEITELIQKAL 269
>sp|Q4QR75|EXOS9_RAT Exosome complex component RRP45 OS=Rattus norvegicus GN=Exosc9 PE=2
SV=1
Length = 437
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + L + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L V C + +V E+ +++++A+
Sbjct: 238 GGIML-LKDQVFRCSKIAGVKVAEITELIQKAL 269
>sp|Q06265|EXOS9_HUMAN Exosome complex component RRP45 OS=Homo sapiens GN=EXOSC9 PE=1 SV=3
Length = 439
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 26 RYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL 85
R+ R + E R D R RN IS G + G + ++G T +L + E+++P L
Sbjct: 12 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL 68
Query: 86 ESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKA 145
EG + + + + +P PGR ++ + + + + +S I+ + L +V G+
Sbjct: 69 NRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEK 128
Query: 146 AWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEP 205
W + +D++ L+ DG + DAA ++A+ A + + P VS+ ++ + E E++P
Sbjct: 129 VWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE------ERDP 182
Query: 206 VNKEKRKLTLGGIPF--SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKP 263
V L++ +P S Y+L DP EE +M+ L+ + ++ ++ ++
Sbjct: 183 V-----PLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 237
Query: 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAI 296
GG +L ++ C + +V E+ +++ +A+
Sbjct: 238 GGIMLLKDQVLR-CSKIAGVKVAEITELILKAL 269
>sp|O74918|RRP45_SCHPO Exosome complex component rrp45 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp45 PE=3 SV=1
Length = 291
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 120/261 (45%), Gaps = 20/261 (7%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
+S +E + F L E+ L R D R LS R+ I G G G
Sbjct: 1 MSRHLETSLNNKEFVLNSLEKGL----RLDGRQLSDFRSLEIQFG---KEYGQVDVSFGH 53
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISS 129
T ++A I E+ P + P +G SI + P+ GR ++ V+++ + +
Sbjct: 54 TRVMARITTEITKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRR 113
Query: 130 SGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189
S ++ + L ++ G+ W V ++ ++ DG L DAA ++ +AA + + P +++ ++
Sbjct: 114 SNALDTESLCIISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRPELTVVGEEV 173
Query: 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILA--DPTSEEESIMETLV 247
+ P E E+ PV L++ +P +T N LA D T EEE + +
Sbjct: 174 TVHPVE------ERVPV-----PLSILHMPICVTFSFFNNGELAIVDATLEEEDLCNGSM 222
Query: 248 TVVLDSSNQLVSLYKPGGAVL 268
T+ L+ + ++ +YK GG ++
Sbjct: 223 TITLNKNREVCQIYKAGGIII 243
>sp|Q05636|RRP45_YEAST Exosome complex component RRP45 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRP45 PE=1 SV=1
Length = 305
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 133/303 (43%), Gaps = 36/303 (11%)
Query: 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGS 69
++ ++E+ A F L L ++ R D RS + R+ I+ G G K+G+
Sbjct: 1 MAKDIEISASESKFILEA----LRQNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMGN 53
Query: 70 TTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGR-PAEAAPVVAKQLSDTIS 128
T + I ++ P + P EG I + P+ G E + ++ + ++
Sbjct: 54 TKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVR 113
Query: 129 SSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGK 188
SG ++++ L +V G W V D++ LD DG DA+ ++ +A + + P +++ +
Sbjct: 114 RSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQ 173
Query: 189 IVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL--------------HKNYILAD 234
I++ P +E+EPV L + IP +T + + D
Sbjct: 174 IIVHPV------NEREPV-----PLGILHIPICVTFSFFNPQDTEENIKGETNSEISIID 222
Query: 235 PTSEEESIMETLVTVVLDSSNQLVSLYKPGGA---VLAYTSAVQDCIALTRQRVKELHQI 291
T +EE + + ++TV L+ + ++V + K GG L + ++ + ++ Q+
Sbjct: 223 ATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQILQL 282
Query: 292 LEE 294
L+E
Sbjct: 283 LKE 285
>sp|Q15024|EXOS7_HUMAN Exosome complex component RRP42 OS=Homo sapiens GN=EXOSC7 PE=1 SV=3
Length = 291
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 130/280 (46%), Gaps = 20/280 (7%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++LK L +
Sbjct: 73 KPNEG--YLEFFVD--CSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGSKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCIRLSVENVPCIVTLCKIGYRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 262 KPGGAVLAYTSAVQDCIALTRQRV-KELHQILEEAISGME 300
K G L S + + T +RV K LH L+ + E
Sbjct: 241 KVGKGSLDPESIFE--MMETGKRVGKVLHASLQSVVHKEE 278
>sp|Q9D0M0|EXOS7_MOUSE Exosome complex exonuclease RRP42 OS=Mus musculus GN=Exosc7 PE=2
SV=2
Length = 291
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 17/247 (6%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE 86
Y + E +R D R R + V++ GSA K+G T +L +K E+ TP LE
Sbjct: 13 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 72
Query: 87 SPDEGCVSIDFHMPPICSPLVRP---GRPA-EAAPVVAKQLSDTISSSGMINLKELSLVG 142
P+EG ++F + CS P GR + +A L ++ ++L+ L +
Sbjct: 73 KPNEG--YLEFFVD--CSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLRSLCISP 128
Query: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSE 202
+ W++Y+D+ L+ G LFDA ++ AA N +IP ++ +L +E+ ++ E
Sbjct: 129 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP-------RVRVLEDEEGAKDIE 181
Query: 203 KEPVNKEKRKLTLGGIPFSLT-CILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
+ +L++ +P +T C + +++ D T +EE+ + V + S + +
Sbjct: 182 LSDDPYDCIRLSVENVPCIVTLCKIGCRHVV-DATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 262 KPGGAVL 268
K G L
Sbjct: 241 KVGKGSL 247
>sp|Q54VM4|EXOS7_DICDI Putative exosome complex exonuclease RRP42 OS=Dictyostelium
discoideum GN=exosc7 PE=3 SV=1
Length = 324
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 120/290 (41%), Gaps = 64/290 (22%)
Query: 27 YFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEV------ 80
+ ++ + +IR D R+ RN I G + A+GSA K+ T +L +K E+
Sbjct: 11 FIQQGVENNIRSDGRNRVDYRNFAIETGEIIHANGSARVKLSQTEVLVGVKAEITHIQSE 70
Query: 81 MTPSLESPDEGCVSIDFHMPPICSPLVRP---GRPAE--------------AAPVVAKQL 123
+T +L+ D S C P P G+ +E + P V K L
Sbjct: 71 ITSNLQQSD---TSKRLVFSVNCCPSASPEFEGKGSEFLNIELSKQLERLYSHPNVIKNL 127
Query: 124 -----------------------------SDTISSSGMINLKELSLVGGKAAWMVYLDIY 154
D I++SG N S+V GK W +Y+D
Sbjct: 128 KLTNPIISNNNNNNNKIKEAEEGKEKEKEGDIITNSGDDNC--FSIVSGKYYWTLYVDAI 185
Query: 155 CLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLT 214
LD+DG LFDA ++ +A N +IP V G+ EE E S+ +P ++ L+
Sbjct: 186 VLDSDGNLFDALSIACRSALQNTRIPRVKAIQGEY----EEITFEVSD-DP--EDTLSLS 238
Query: 215 LGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG 264
+ +P +T N + D T +EE M +TV ++S + S+ K G
Sbjct: 239 IDNVPICVTLTKIGNQFVIDTTLQEELCMNARLTVGVNSLANICSIQKGG 288
>sp|B1Y978|ECX1_PYRNV Probable exosome complex exonuclease 1 OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1381 PE=3
SV=1
Length = 246
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 19/171 (11%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK--MEVMTPSLESPD 89
L +R D R+ + R IS+G +++ADGSA+ G+TT +AA+ E+ L PD
Sbjct: 9 LQGGVRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPD 68
Query: 90 EGCVSIDFHMPPICSPLVRPG-RPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWM 148
G + + +HM P + R P+ ++K L + + + M+ S +
Sbjct: 69 RGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRID------ 122
Query: 149 VYLDIYCLDADGALFDAALLSAVAAFSNLQIP--------TVSLDDGKIVM 191
V+++I L ADG+ A+L +A A ++ I +V L DG +V+
Sbjct: 123 VFIEI--LQADGSTRVASLTAASLALADAGIYMRDLVIGVSVGLVDGTVVL 171
>sp|A3MUP1|ECX1_PYRCJ Probable exosome complex exonuclease 1 OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=Pcal_0933 PE=3 SV=1
Length = 246
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 11/151 (7%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK--MEVMTPSLESPD 89
L +R D R+ + R I +G V++ADGSA+ G+TT +AA+ E+ L PD
Sbjct: 9 LQNGLRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPD 68
Query: 90 EGCVSIDFHMPPICSPLVRPG-RPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWM 148
G + + +HM P + R P+ ++K L + + + M+ S +
Sbjct: 69 RGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRID------ 122
Query: 149 VYLDIYCLDADGALFDAALLSAVAAFSNLQI 179
V+++I L ADG+ A+L +A A ++ I
Sbjct: 123 VFIEI--LQADGSTRVASLTAASLALADAGI 151
>sp|Q8ZVM9|ECX1_PYRAE Probable exosome complex exonuclease 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=PAE2207 PE=3 SV=1
Length = 246
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK--MEVMTPSLESPD 89
L +R D R+ + R I++G V++ADGSA+ G+TT +AA+ E+ L PD
Sbjct: 9 LQNGVRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPD 68
Query: 90 EGCVSIDFHMPPICS 104
G + + +HM P +
Sbjct: 69 RGVMRVRYHMAPFST 83
>sp|A4WM67|ECX1_PYRAR Probable exosome complex exonuclease 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=Pars_1937 PE=3 SV=1
Length = 246
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK--MEVMTPSLESPD 89
L +R D R + R IS+G V++ADGSA+ G+TT +AA+ E+ L PD
Sbjct: 9 LQNGVRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPD 68
Query: 90 EGCVSIDFHMPPICS 104
G + + +HM P +
Sbjct: 69 RGVMRVRYHMAPFST 83
>sp|Q4JB27|ECX1_SULAC Probable exosome complex exonuclease 1 OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=Saci_0610 PE=3 SV=1
Length = 243
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK--MEVMTPSLESPD 89
L +R D R L R I +G + +ADGSA+ ++G+T ++AA+ E+ L PD
Sbjct: 11 LENGLRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPD 70
Query: 90 EGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINL 135
+ + + +HM P + + P+ ++K + + + S+ ++NL
Sbjct: 71 KASLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILLNL 116
>sp|A1RST0|ECX1_PYRIL Probable exosome complex exonuclease 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=Pisl_0836 PE=3 SV=1
Length = 246
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK--MEVMTPSLESPD 89
+R D R+ + R I++G V++ADGSA+ G+TT +AA+ E+ L PD
Sbjct: 9 FQNGVRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPD 68
Query: 90 EGCVSIDFHMPPICS 104
G + + +HM P +
Sbjct: 69 RGVMRVRYHMAPFST 83
>sp|Q975G8|ECX1_SULTO Probable exosome complex exonuclease 1 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_04430 PE=3 SV=2
Length = 243
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 10/158 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAI--KMEVMTPSLESPD 89
L +R D R R I +G + +ADGSA+ ++G+T ++AA+ E+ L PD
Sbjct: 11 LDNGLRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPD 70
Query: 90 EGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMV 149
+ + +HM P + + P+ ++K + + + S+ ++ L +++ V
Sbjct: 71 RAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILVELFPRTVID------V 124
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDG 187
++++ L AD +L++A A ++ IP L G
Sbjct: 125 FMEV--LQADAGTRLVSLMAASMALADAGIPMRDLIAG 160
>sp|Q9UXC2|ECX1_SULSO Probable exosome complex exonuclease 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=SSO0735 PE=1 SV=1
Length = 248
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 10/158 (6%)
Query: 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK--MEVMTPSLESPD 89
L + R D R R+ I +G + +ADGSA+ ++G+T +AA+ E+ L PD
Sbjct: 14 LDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPD 73
Query: 90 EGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMV 149
+ + +HM P + + P+ ++K + + + S+ ++ L + A V
Sbjct: 74 RAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFP------RTAIDV 127
Query: 150 YLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDG 187
+ +I DA L +L++A A ++ IP L G
Sbjct: 128 FTEILQADAGSRL--VSLMAASLALADAGIPMRDLIAG 163
>sp|A8HV93|RNPH_AZOC5 Ribonuclease PH OS=Azorhizobium caulinodans (strain ATCC 43989 /
DSM 5975 / ORS 571) GN=rph PE=3 SV=1
Length = 238
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 105/269 (39%), Gaps = 41/269 (15%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM-EVMTPSLESPDEGCVS 94
+RP R+ R + G + A+GS L K G T +L A + E + P L+ G V+
Sbjct: 1 MRPSRRANDEMRAVSFERGVLRHAEGSCLVKFGDTHVLVAATLEERLPPWLKGQGRGWVT 60
Query: 95 IDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMI--NLKELSLVGGKAAWMVYLD 152
++ M P + L R R A KQ T +I +L+ ++ + G + LD
Sbjct: 61 AEYSMLPRAT-LERTRREA----TTGKQSGRTQEIQRLIGRSLRSVTDLVGLGERQITLD 115
Query: 153 IYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRK 212
L ADG AA+ A A + +N ++
Sbjct: 116 CDVLQADGGTRTAAITGAWVALHDC----------------------------LNWMYQR 147
Query: 213 LTLGGIPF-----SLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAV 267
L IP +++C +H+ + D E+S ET V+ + +V +
Sbjct: 148 SMLKTIPLKENVAAISCGIHEGTPVLDLDYAEDSKAETDANFVMTGTGGIVEIQGTAEKT 207
Query: 268 LAYTSAVQDCIALTRQRVKELHQILEEAI 296
+ +AL R+ V EL ++ ++AI
Sbjct: 208 PFSQDELLSLLALARKGVGELVELQKQAI 236
>sp|Q01NZ9|RNPH_SOLUE Ribonuclease PH OS=Solibacter usitatus (strain Ellin6076) GN=rph
PE=3 SV=1
Length = 238
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 16/147 (10%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKME-VMTPSLESPDEGCVS 94
+R D R+ + R I+ G + +A+GSAL K+G+T +L A +E + P L + +G V+
Sbjct: 1 MRTDNRTAGQLRPVQITTGCLMTAEGSALIKVGNTHVLCAATIEDTVPPFLRNTGKGWVT 60
Query: 95 IDFHMPPICSPLVRP-----GRPAEAAPVVAKQLSDTISSS-GMINLKELSLVGGKAAWM 148
++ M P + P GRP+ + + + ++ S+ M + E +L+
Sbjct: 61 AEYSMLPRATAKRTPREVTKGRPSGRTHEIQRLIGRSMRSAVDMSSFGERTLI------- 113
Query: 149 VYLDIYCLDADGALFDAALLSAVAAFS 175
+D + ADG A++ A A +
Sbjct: 114 --IDCDVIQADGGTRTASITGAFVAMA 138
>sp|Q2JRJ9|RNPH_SYNJA Ribonuclease PH OS=Synechococcus sp. (strain JA-3-3Ab) GN=rph PE=3
SV=1
Length = 242
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 40/232 (17%)
Query: 37 RPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM-EVMTPSLESPDEGCVSI 95
RPD R+ ++ R + A GS L K G T +L + E + P L++ +G ++
Sbjct: 5 RPDGRTAAQLRPISFQRHFTRYAPGSVLVKFGDTHVLCTASVAEEVPPFLQNTGQGWLTA 64
Query: 96 DFHMPPICSPLVRP-------GRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWM 148
++ M P + +P GR AE ++ + L + + +G +
Sbjct: 65 EYRMLPTATQQRQPRETLKVSGRTAEIQRLIGRSLRAAL---------DFHKLGSRT--- 112
Query: 149 VYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNK 208
+ +D L ADG+ AA+ A + I L ++ + ++ P+ +
Sbjct: 113 ITVDADVLQADGSTRTAAITGGYVALHD-----------AITWLYKQGLLDPAQGSPLRQ 161
Query: 209 EKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSL 260
+ L++G + + +L D EE+S E + +V++ L+ +
Sbjct: 162 QVAALSVGIV---------RGEVLVDLCYEEDSQAEVDMNIVMNEQGALIEI 204
>sp|A2BKC0|ECX1_HYPBU Probable exosome complex exonuclease 1 OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=Hbut_0571 PE=3 SV=1
Length = 255
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 25 LRYFERHLAE-SIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK--MEVM 81
+R+ ER + +IR D R + R + +G +++ADGSAL + G T ++AA+ E
Sbjct: 12 IRWEERDGQKVAIRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAH 71
Query: 82 TPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLV 141
+ PD + +HM P + + P ++K + + + + + + EL
Sbjct: 72 PRHVALPDRAIIRCRYHMAPFSTAERKTPAPTRREVELSKVIREALEA---VVISELY-- 126
Query: 142 GGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQI 179
+ A VY+++ L +DG AA+ +A A ++ I
Sbjct: 127 -PRTAIDVYMEV--LQSDGGTRTAAITAASLALADAGI 161
>sp|Q8EPJ5|RNPH_OCEIH Ribonuclease PH OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM
11309 / KCTC 3954 / HTE831) GN=rph PE=3 SV=1
Length = 244
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/264 (19%), Positives = 115/264 (43%), Gaps = 28/264 (10%)
Query: 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKME-VMTPSLESPDEGCVS 94
+R D R +++ RN I+ ++ +GS L ++G+T ++ +E + P + +G ++
Sbjct: 1 MRNDQREVNQLRNINITTNYISHPEGSVLIEMGNTKVICNASIEDRVPPFMRGQGKGWIT 60
Query: 95 IDFHMPPICSPLVRPGRPAEAAPVVAKQLS-DTISSSGMINLKELSLVGGKAAWMVYLDI 153
++ M P + R R + V + + + + ++ +L +G + W +D
Sbjct: 61 AEYAMLPRATAQ-RNIRESSKGKVSGRTMEIQRLIGRALRSVVDLDQIGERTVW---IDC 116
Query: 154 YCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKL 213
+ ADG A++ A A S + L + K + +K P+ +
Sbjct: 117 DVIQADGGTRTASITGAFVAMS---LAFAKLVEAKTL-----------KKTPIQDYLAAI 162
Query: 214 TLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSA 273
++ G+ + T IL NY EE+S + +V+ + V + G +
Sbjct: 163 SV-GVLTNGTEILDLNY-------EEDSEAAVDMNIVMTGEGEFVEIQGTGEEATFTPNQ 214
Query: 274 VQDCIALTRQRVKELHQILEEAIS 297
+Q+ + L + +++L +I +E ++
Sbjct: 215 LQNMLKLGEEGIQQLVKIQKELLA 238
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,481,424
Number of Sequences: 539616
Number of extensions: 4021053
Number of successful extensions: 15635
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 383
Number of HSP's that attempted gapping in prelim test: 15370
Number of HSP's gapped (non-prelim): 577
length of query: 302
length of database: 191,569,459
effective HSP length: 117
effective length of query: 185
effective length of database: 128,434,387
effective search space: 23760361595
effective search space used: 23760361595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)