Query 022140
Match_columns 302
No_of_seqs 159 out of 1247
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 14:36:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2po1_B Probable exosome comple 100.0 2.9E-58 9.8E-63 415.4 33.1 273 13-299 3-275 (277)
2 2nn6_C Exosome complex exonucl 100.0 1E-58 3.5E-63 418.7 28.5 271 16-300 4-276 (278)
3 2je6_A RRP42, exosome complex 100.0 3.1E-58 1.1E-62 415.3 29.5 274 10-297 3-276 (277)
4 2wnr_A Probable exosome comple 100.0 6.3E-57 2.2E-61 405.5 32.9 267 16-297 4-270 (271)
5 3m7n_G Probable exosome comple 100.0 4.8E-57 1.6E-61 403.6 31.1 251 22-294 8-258 (259)
6 2wp8_A Exosome complex compone 100.0 2.8E-57 9.5E-62 414.2 27.8 271 14-299 1-286 (305)
7 2nn6_A Polymyositis/scleroderm 100.0 1.1E-56 3.9E-61 416.2 26.1 274 11-299 14-289 (358)
8 2nn6_E Exosome complex exonucl 100.0 4.5E-57 1.6E-61 412.6 22.4 272 19-300 19-292 (305)
9 2wnr_B Probable exosome comple 100.0 1.2E-48 4.1E-53 345.6 29.9 232 23-299 3-237 (240)
10 2nn6_B Exosome complex exonucl 100.0 5.2E-48 1.8E-52 343.2 28.4 232 23-299 3-239 (249)
11 2po1_A Probable exosome comple 100.0 4.5E-47 1.5E-51 337.1 26.8 226 29-299 9-237 (249)
12 3b4t_A Ribonuclease PH; RNAse, 100.0 5.8E-46 2E-50 332.3 30.0 235 33-299 3-245 (262)
13 2je6_B RRP41, exosome complex 100.0 9E-46 3.1E-50 329.0 29.2 223 32-299 16-241 (250)
14 3m7n_D Probable exosome comple 100.0 3.4E-46 1.2E-50 332.3 26.3 224 30-298 10-239 (258)
15 1r6l_A Ribonuclease PH; beta-a 100.0 1.9E-45 6.6E-50 324.9 28.5 231 36-298 2-239 (239)
16 1udn_A Ribonuclease PH, RNAse 100.0 9.9E-46 3.4E-50 329.5 26.7 231 36-298 1-238 (255)
17 1oys_A Ribonuclease PH; transf 100.0 6.3E-46 2.2E-50 329.1 23.4 232 36-299 1-240 (245)
18 2wp8_B Exosome complex compone 100.0 1.7E-45 5.7E-50 326.6 26.1 222 32-299 8-235 (246)
19 3dd6_A Ribonuclease PH; exorib 100.0 2.3E-45 7.9E-50 326.5 26.9 235 33-299 8-250 (255)
20 2nn6_D Exosome complex exonucl 100.0 1.2E-44 4.1E-49 319.3 24.5 218 29-299 9-233 (237)
21 3hkm_A OS03G0854200 protein; R 100.0 2.9E-43 1E-47 311.3 23.7 214 34-299 2-233 (246)
22 2nn6_F MTR3, exosome component 100.0 7.2E-44 2.5E-48 320.4 18.4 230 22-299 15-262 (272)
23 3u1k_A Polyribonucleotide nucl 100.0 4E-39 1.4E-43 316.2 29.2 240 14-299 296-557 (630)
24 3cdi_A Polynucleotide phosphor 100.0 2.1E-38 7.1E-43 315.4 26.9 239 17-299 301-550 (723)
25 3gme_A Polyribonucleotide nucl 100.0 5.2E-38 1.8E-42 302.7 28.2 242 14-299 292-544 (549)
26 1e3p_A Guanosine pentaphosphat 100.0 1.1E-37 3.7E-42 311.2 29.6 241 15-299 334-589 (757)
27 4aid_A Polyribonucleotide nucl 100.0 3.2E-37 1.1E-41 305.5 25.5 244 12-299 306-560 (726)
28 3krn_A Protein C14A4.5, confir 100.0 3.5E-37 1.2E-41 268.8 -0.0 201 43-298 2-207 (222)
29 3u1k_A Polyribonucleotide nucl 100.0 3.2E-29 1.1E-33 246.2 23.8 205 46-299 14-227 (630)
30 3cdi_A Polynucleotide phosphor 100.0 6.1E-28 2.1E-32 240.3 20.2 202 47-299 20-232 (723)
31 4aid_A Polyribonucleotide nucl 99.9 1.3E-25 4.6E-30 222.5 23.0 202 46-299 27-240 (726)
32 3gme_A Polyribonucleotide nucl 99.9 8.5E-26 2.9E-30 217.8 20.8 203 46-299 13-226 (549)
33 1e3p_A Guanosine pentaphosphat 99.9 1.8E-23 6.1E-28 208.9 25.3 204 47-299 37-267 (757)
34 1whu_A Polynucleotide phosphor 94.4 0.025 8.5E-07 42.3 3.1 32 16-47 72-103 (104)
35 4gqc_A Thiol peroxidase, perox 21.9 2.7E+02 0.0091 21.2 7.1 16 247-262 123-138 (164)
36 2i7u_A Four-alpha-helix bundle 21.7 1.5E+02 0.0053 18.4 4.3 25 274-298 37-61 (62)
37 1ybx_A Conserved hypothetical 20.2 2.8E+02 0.0096 21.4 6.4 42 242-284 73-116 (143)
No 1
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=100.00 E-value=2.9e-58 Score=415.37 Aligned_cols=273 Identities=27% Similarity=0.436 Sum_probs=247.1
Q ss_pred cccHHHHhhhChHHHHHHHHhcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeeccCCCCCCCcce
Q 022140 13 EMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGC 92 (302)
Q Consensus 13 ~~~~~~~~~~~p~~f~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~~p~~~~p~~g~ 92 (302)
++..+.|.+..|++|+++++++++|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|++++..|..+.|++|.
T Consensus 3 ~~~~~~~~s~~~~~~i~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~ 82 (277)
T 2po1_B 3 HMSDNEIVAGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMGV 82 (277)
T ss_dssp --------CCHHHHHHHHHHHTTCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEEEECCCTTCTTSCE
T ss_pred CcccccccCccHHHHHHHHHhcCCCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCeEEEEEEEecccCCCCCCCCceE
Confidence 34455688999999999999999999999999999999999999999999999999999999999888888888899999
Q ss_pred EEEEEecCCCCCCCccCCCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHHHH
Q 022140 93 VSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVA 172 (302)
Q Consensus 93 l~v~V~~~~~~~~~~~~g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~~~ 172 (302)
+.++|+++|++++.++.|++++++++++++|++.|+++++||+++|||+||+++|.|+|+++||++|||++||+++|+++
T Consensus 83 l~~~~~~~p~a~~~~~~g~~~~~~~~l~~li~r~l~~s~~idl~~L~i~pg~~~w~i~id~~VL~~dG~~~~a~i~aa~~ 162 (277)
T 2po1_B 83 MTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIA 162 (277)
T ss_dssp EEEEEEECGGGCTTCCSSSCCHHHHHHHHHHHHHHHTTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHH
T ss_pred EEEEEEeCCCccccccCCCCChHHHHHHHHHHHHHhhcccccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999998888888999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHhhCCCCcEEecCCceeecCccccccccCcCccccccccccCCCccEEEEEEEECCEEEECCChHHHhcCCceEEEEEc
Q 022140 173 AFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLD 252 (302)
Q Consensus 173 AL~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l~DPt~~Ee~~~~~~l~i~~~ 252 (302)
||+|+++|.+.++++....+ ...+..++.|+++|+++||+++++.+++|||.+||+.+++.++|+++
T Consensus 163 AL~da~~p~~~~~~~~~~~~-------------~~~~~~~ipl~~~~~avs~g~~~~~~l~Dp~~~Ee~~~~~~~~v~~~ 229 (277)
T 2po1_B 163 ALLNARVPKVRYNEETGEVE-------------TLDETEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTD 229 (277)
T ss_dssp HHHHCEEEEEEECTTTCCEE-------------EEEEEEECCBCCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEEEEC
T ss_pred HHHhcCCCcEEEeCCCceee-------------cccccccccccCceEEEEEEEECCEEEeCCCHHHHhhCCCcEEEEEc
Confidence 99999999998833211111 13456678899999999999999999999999999999999999999
Q ss_pred CCCcEEEEEccCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 253 SSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 253 ~~g~i~~i~~~G~~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
++|+++.+++.|+.+++.++ |.+|+++|.+++++|+++++++|++.
T Consensus 230 ~~g~i~~lq~~g~~~~~~~~-l~~~l~~A~~~~~~l~~~~~~~l~~~ 275 (277)
T 2po1_B 230 ETGHISAVQKSEGGAFKLEE-VMYAVETAFKKAEEIRKLILEAVEKA 275 (277)
T ss_dssp TTSCEEEEEEESSCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEccCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999888899996 99999999999999999999999864
No 2
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1e-58 Score=418.70 Aligned_cols=271 Identities=36% Similarity=0.683 Sum_probs=249.5
Q ss_pred HHHHhhhChHHHHHHHHhcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeeccCCCCCCCcceEEE
Q 022140 16 VDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSI 95 (302)
Q Consensus 16 ~~~~~~~~p~~f~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~~p~~~~p~~g~l~v 95 (302)
+++|+++.|++|++++|++++|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|++++..|...+|++|.+.+
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v 83 (278)
T 2nn6_C 4 AAGFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYVVP 83 (278)
T ss_dssp -----CCSTHHHHHHHHHTSCCTTSCCSCCCCSCCEEETCCSSSSEEEEEEETTEEEEEEEEEEECCCCSSSTTCCCCEE
T ss_pred hhhhhhhCHHHHHHHHHhcCCCCCCCCcccccCeEEEeCCccCCCceEEEEeCCeEEEEEEEEEeecCCCCCCCccEEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999888888899999999
Q ss_pred EEecCCCCCCCccCCCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHHHHHHh
Q 022140 96 DFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFS 175 (302)
Q Consensus 96 ~V~~~~~~~~~~~~g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~~~AL~ 175 (302)
+|+++|++++.|++|+++++++.++++|++.|+++.++|+++|||.||+++|.|+|+++||++|||+++|+++|+++||+
T Consensus 84 ~~~~~p~a~~~~~~g~~~~~~~~~s~li~r~l~~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~ 163 (278)
T 2nn6_C 84 NVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALK 163 (278)
T ss_dssp EEECCSSSCTTSCSSSCCHHHHHHHHHHHHHHHHHCCSCHHHHCSSBTTBCEEEEEEEEESSCCSCTTHHHHHHHHHHHH
T ss_pred EEEeCCccCccccCCCCcHHHHHHHHHHHHHHhccCCCCHHHCEEeCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 99999999999988999999999999999999987899999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEecC-CceeecCccccccccCcCccccccccccCCCccEEEEEEEECC-EEEECCChHHHhcCCceEEEEEcC
Q 022140 176 NLQIPTVSLDD-GKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKN-YILADPTSEEESIMETLVTVVLDS 253 (302)
Q Consensus 176 ~~~iP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~-~~l~DPt~~Ee~~~~~~l~i~~~~ 253 (302)
++++|.+.+.. +.+. ..++.+..++.++++|+++|||++++ .+++|||.+||+.+++.++|++++
T Consensus 164 ~a~iP~v~~~~~~~~~-------------~~~~~~~~~lp~~~~~~avs~g~~~~~~~l~Dpt~~Ee~~~~~~l~va~~~ 230 (278)
T 2nn6_C 164 NVQLPEVTINEETALA-------------EVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDE 230 (278)
T ss_dssp TCCCCCCCBCSSSBCC-------------CTTSCCCSCSCCSCCCEEEEEEECTTTCCEESCCTTTTTSCSEEEEEEECT
T ss_pred hCCCCeEEEeCCCcce-------------ecCcccccccccCCceEEEEEEEECCceEEECCCHHHHhhcCceEEEEEcC
Confidence 99999988832 2211 12345778899999999999999999 999999999999999999999999
Q ss_pred CCcEEEEEccCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 022140 254 SNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300 (302)
Q Consensus 254 ~g~i~~i~~~G~~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~~ 300 (302)
+|+|+++++.|+..++.++ |.+|+++|.+++++|++++++++++++
T Consensus 231 ~g~i~~v~~~g~~~~~~~~-l~~~l~~a~~~~~~i~~~~~~~l~~~~ 276 (278)
T 2nn6_C 231 EGKLCCLHKPGGSGLTGAK-LQDCMSRAVTRHKEVKKLMDEVIKSMK 276 (278)
T ss_dssp TCCEEEEEESCCSCCCHHH-HHHHHHHHHHHHHHHHHHHHTTTTTTC
T ss_pred CCcEEEEEccCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999977899996 999999999999999999999998865
No 3
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=100.00 E-value=3.1e-58 Score=415.33 Aligned_cols=274 Identities=26% Similarity=0.438 Sum_probs=254.0
Q ss_pred ccccccHHHHhhhChHHHHHHHHhcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeeccCCCCCCC
Q 022140 10 LSSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPD 89 (302)
Q Consensus 10 ~~~~~~~~~~~~~~p~~f~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~~p~~~~p~ 89 (302)
-+.+|..+.|.+..|++|+++++++++|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|+++...|..+.|+
T Consensus 3 ~~~~~~~~~~~s~~~~~~i~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~ 82 (277)
T 2je6_A 3 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPN 82 (277)
T ss_dssp CEECCCCSSCCCHHHHHHHTTTGGGTBCTTSCBTTCCCCEEEEETCSTTSSEEEEEEETTEEEEEEEEEEEECCCTTCTT
T ss_pred ccccccccccccccHHHHHHHHHhcCCCCCCCCcCcccCeEEEeCCcCCCCeEEEEEECCeEEEEEEEeeeeCCCCCCCC
Confidence 36788999999999999999999999999999999999999999999999999999999999999999988888877899
Q ss_pred cceEEEEEecCCCCCCCccCCCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHH
Q 022140 90 EGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLS 169 (302)
Q Consensus 90 ~g~l~v~V~~~~~~~~~~~~g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A 169 (302)
+|.+.++|+++|++++.++.|+++++++.++++|++.|+++++++++.|||.||+++|.|+|+++||++|||+++|+++|
T Consensus 83 ~g~l~v~~~~~p~a~~~~~~g~~~~~~~~is~li~r~lr~~~~i~~~~l~i~~g~~~~~i~i~~~VL~~DG~~~~aai~a 162 (277)
T 2je6_A 83 QGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLA 162 (277)
T ss_dssp CCEEEEEEEECTTSCTTCCCSSCCHHHHHHHHHHHHHHHHTTCSCGGGGEEETTTEEEEEEEEEEEEECCSCHHHHHHHH
T ss_pred ccEEEEEEEeCCccCcccccCCCChHHHHHHHHHHHHHhccCCcCHHHceeecCceEEEEEEEEEEECCCCCHHHHHHHH
Confidence 99999999999999998888999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCcEEecCCceeecCccccccccCcCccccccccccCCCccEEEEEEEECCEEEECCChHHHhcCCceEEE
Q 022140 170 AVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTV 249 (302)
Q Consensus 170 ~~~AL~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l~DPt~~Ee~~~~~~l~i 249 (302)
+++||+++++|.+.++++.+..++ ..+..++.++++|+++|||++++.+++|||.+||+.+++.++|
T Consensus 163 a~~AL~~a~~p~v~~~~~~~~~~~-------------~~~~~~ip~~~~~~avsvg~~~~~~l~Dpt~~Ee~~~~~~l~v 229 (277)
T 2je6_A 163 SVAALYNTKVYKVEQHSNGISVNK-------------NEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISF 229 (277)
T ss_dssp HHHHHHTCEEEEEECC---CEEEE-------------EEEEEECCCSCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEE
T ss_pred HHHHHHhcCCCeEEecCCcceEec-------------cCccccccccCCeEEEEEEEECCEEecCCCHHHHhcCCCcEEE
Confidence 999999999999988544333221 2356678899999999999999999999999999999999999
Q ss_pred EEcCCCcEEEEEccCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022140 250 VLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297 (302)
Q Consensus 250 ~~~~~g~i~~i~~~G~~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~ 297 (302)
+++++|+++++++.|+..++.++ +.+|+++|.+++++|+++++++++
T Consensus 230 a~~~~g~i~~v~~~g~~~~~~~~-l~~~l~~A~~~~~~i~~~~~~~l~ 276 (277)
T 2je6_A 230 SYTPDLKIVGIQKSGKGSMSLQD-IDQAENTARSTAVKLLEELKKHLG 276 (277)
T ss_dssp EECTTCCEEEEEEESSSCEEHHH-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999877899996 999999999999999999999875
No 4
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=6.3e-57 Score=405.52 Aligned_cols=267 Identities=26% Similarity=0.485 Sum_probs=244.7
Q ss_pred HHHHhhhChHHHHHHHHhcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeeccCCCCCCCcceEEE
Q 022140 16 VDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSI 95 (302)
Q Consensus 16 ~~~~~~~~p~~f~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~~p~~~~p~~g~l~v 95 (302)
...|.+..|++|+++++++++|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|+++..+|..+.|++|.+.+
T Consensus 4 ~~~~~s~~~~~~~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v 83 (271)
T 2wnr_A 4 KMDIIPEITRKSITDLINNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILT 83 (271)
T ss_dssp -----CCHHHHHHHHHHHTTCCTTCCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEEEEECCCTTCTTCCEEEE
T ss_pred ccccccccHHHHHHHHHhcCCCCCCCCcccccCeEEEeCccCCCCeEEEEEECCeEEEEEEEeeeecCCCCCCCceEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999888788878899999999
Q ss_pred EEecCCCCCCCccCCCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHHHHHHh
Q 022140 96 DFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFS 175 (302)
Q Consensus 96 ~V~~~~~~~~~~~~g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~~~AL~ 175 (302)
+|+++|++++.++.|+++++++.++++|++.|++++++|++.|||.||+++|.|+|+++||++|||++||+++|+++||+
T Consensus 84 ~~~~~p~a~~~~~~g~~~~~~~~~s~li~r~lr~s~~i~l~~l~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~ 163 (271)
T 2wnr_A 84 NSELLPMASPTFEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALL 163 (271)
T ss_dssp EEEECGGGCTTCCCSSCCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred EEEeCCcccccccCCCCchHHHHHHHHHHHHHhccCCccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 99999999998888999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEecCCceeecCccccccccCcCccccccccccCCCccEEEEEEEECCEEEECCChHHHhcCCceEEEEEcCCC
Q 022140 176 NLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSN 255 (302)
Q Consensus 176 ~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l~DPt~~Ee~~~~~~l~i~~~~~g 255 (302)
++++|.+.++++... + +..+..++.++++|+++|||++++.+++|||.+||+.+++.++|+++++|
T Consensus 164 ~a~~p~~~~~~~~~~-~-------------~~~~~~~ip~~~~~~avt~g~~~~~~l~Dpt~~Ee~~~~~~l~va~~~~~ 229 (271)
T 2wnr_A 164 DTRIPAAEVEDGEVV-I-------------NREKMQPLPVNRKALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEG 229 (271)
T ss_dssp HCEEEEEEEETTEEE-E-------------EEEEEEECCBCCCEEEEEEEEETTEEEESCCHHHHTTCSEEEEEEEETTS
T ss_pred hcCCCeEEecCCcee-e-------------ccCcccccCccCCeEEEEEEEECCEEEeCCCHHHHhcCCCcEEEEEeCCC
Confidence 999999998443221 1 13456678899999999999999999999999999999999999999999
Q ss_pred cEEEEEccCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022140 256 QLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAIS 297 (302)
Q Consensus 256 ~i~~i~~~G~~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~ 297 (302)
+++++++.|+..++.++ +.+|+++|.+++++|+++++++++
T Consensus 230 ~i~~i~~~g~~~~~~~~-l~~~l~~a~~~~~~i~~~~~~~l~ 270 (271)
T 2wnr_A 230 SICAMQKGGEGPLTRDD-VLKAVSIAVEKVPQLIEYLDKSMT 270 (271)
T ss_dssp CEEEEEEESSSCBCHHH-HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999877899996 999999999999999999999875
No 5
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=100.00 E-value=4.8e-57 Score=403.56 Aligned_cols=251 Identities=30% Similarity=0.523 Sum_probs=236.7
Q ss_pred hChHHHHHHHHhcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeeccCCCCCCCcceEEEEEecCC
Q 022140 22 LFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPP 101 (302)
Q Consensus 22 ~~p~~f~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~~p~~~~p~~g~l~v~V~~~~ 101 (302)
..+++|++++|++++|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|++++..|..++|++|.+.++|+++|
T Consensus 8 ~~e~~~i~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p 87 (259)
T 3m7n_G 8 DIKRDYVLSKLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEPYPDTPDRGVIIVNAELVP 87 (259)
T ss_dssp HHHHHHHHHHHHTTCCTTCCCTTCCCCEEEEETSSTTSSEEEEEEETTEEEEEEEEEEEECCCSSCTTSCEEEEEEECCT
T ss_pred HHHHHHHHHHHhcCCCCCCCCCccccCeEEEeCCcCCCCceEEEEECCcEEEEEEEecccCCCCCCCCceEEEEEEEeCC
Confidence 46789999999999999999999999999999999999999999999999999999998888888899999999999999
Q ss_pred CCCCCccCCCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHHHHHHhhCCCCc
Q 022140 102 ICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPT 181 (302)
Q Consensus 102 ~~~~~~~~g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~~~AL~~~~iP~ 181 (302)
++++.|++|+++++++.++++|++.|++++++|+++|||+||+++|.|+|+++||++|||++||+++|+++||+++++|.
T Consensus 88 ~a~~~~~~g~~~~~~~~~srli~r~lr~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~ 167 (259)
T 3m7n_G 88 LASPTFEPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPA 167 (259)
T ss_dssp TSCTTCCSSSSCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHTCEECT
T ss_pred cccccccCCCCChHHHHHHHHHHHHHhhcCCccHHHhcccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhCCCCe
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EEecCCceeecCccccccccCcCccccccccccCCCccEEEEEEEECCEEEECCChHHHhcCCceEEEEEcCCCcEEEEE
Q 022140 182 VSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261 (302)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l~DPt~~Ee~~~~~~l~i~~~~~g~i~~i~ 261 (302)
+.++++ +..++.++++|+++|||++++.+++|||.+||+.+++.++|+++++|+++.++
T Consensus 168 ~~~~~~---------------------~~~~lp~~~~~~avtvg~~~~~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~i~ 226 (259)
T 3m7n_G 168 ERFDLG---------------------EDYLLPVRDLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITTDKDDNVVAMQ 226 (259)
T ss_dssp GGGTSS---------------------SCEECCBCCCCEEEEEEEETTEEEESCCTTGGGGCSCEEEEEECTTSCEEEEE
T ss_pred EEecCC---------------------ceecccccCceeEEEEEEECCEEEECCCHHHHhhCCCcEEEEEeCCCcEEEEE
Confidence 766332 34568899999999999999999999999999999999999999999999999
Q ss_pred ccCCcccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 022140 262 KPGGAVLAYTSAVQDCIALTRQRVKELHQILEE 294 (302)
Q Consensus 262 ~~G~~~~~~~~~l~~~i~~A~~~~~~l~~~l~~ 294 (302)
+.|+..++.++ +.+|+++|.+++++|+++|++
T Consensus 227 ~~g~~~~~~~~-l~~~l~~a~~~~~~l~~~~~~ 258 (259)
T 3m7n_G 227 KSGGYLLDEKL-FDELLDVSINCARKLREKFKE 258 (259)
T ss_dssp EESSCCBCHHH-HHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCcCHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 99888999996 999999999999999998765
No 6
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-57 Score=414.23 Aligned_cols=271 Identities=21% Similarity=0.393 Sum_probs=226.1
Q ss_pred ccHHHHhhhChHHHHHHHHhcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeeccCCCCCCCcceE
Q 022140 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCV 93 (302)
Q Consensus 14 ~~~~~~~~~~p~~f~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~~p~~~~p~~g~l 93 (302)
|..+++....|++|++++|++++|+|||+++|+|++.+++| +++|||+|++|+|+|+|+|++++..|..++|++|.+
T Consensus 1 m~~~~~~s~~e~~~i~~~l~~~~R~DGR~~~e~R~i~i~~g---~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~~ 77 (305)
T 2wp8_A 1 MAKDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQPYEDRPFEGLF 77 (305)
T ss_dssp ------CCHHHHHHHHHHHTTTCCTTSCCTTCCCCEEEEEC---SSTTEEEEEETTEEEEEEEEEEEC-CCSSCTTCCEE
T ss_pred CCCccccCcCHHHHHHHHHhhCCCCCCCCCcccCCeEEEEc---CCCcEEEEEECCeEEEEEEeccccCCcccCCCCcEE
Confidence 55667788899999999999999999999999999999999 799999999999999999999998888888999999
Q ss_pred EEEEecCCCCCCCccCCCCC-CcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHHHH
Q 022140 94 SIDFHMPPICSPLVRPGRPA-EAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVA 172 (302)
Q Consensus 94 ~v~V~~~~~~~~~~~~g~~~-~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~~~ 172 (302)
.++|+|+|++++.|++|+++ ++++.++++|++.|+++.+||+++|||+||+++|.|+|+++||++|||++||+++|+++
T Consensus 78 ~~~ve~~~~~~~~~~~g~~~~~~~~~is~li~r~l~~s~~idl~~L~i~pg~~~w~I~id~~VL~~DG~~~dAai~aa~~ 157 (305)
T 2wp8_A 78 VISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMA 157 (305)
T ss_dssp EEEECCC----------------------CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCccccCCCCChhHHHHHHHHHHHHHhhccCcCHHHccccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHH
Confidence 99999999999988888888 89999999999999988899999999999999999999999999999999999999999
Q ss_pred HHhhCCCCcEEecCCceeecCccccccccCcCccccccccccCCCccEEEEEEEEC--------------CEEEECCChH
Q 022140 173 AFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHK--------------NYILADPTSE 238 (302)
Q Consensus 173 AL~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~--------------~~~l~DPt~~ 238 (302)
||+++++|.+.+++|.+.... ++.+++.++.++++|+++|||+++ +.+|+|||.+
T Consensus 158 AL~~a~iP~~~~~~~~~~i~~-----------~~~~~~~~l~~~~~pvavs~g~i~~~~~~~~~~~~~~~~~~l~Dpt~~ 226 (305)
T 2wp8_A 158 GLMHFKKPDITVHGEQIIVHP-----------VNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLK 226 (305)
T ss_dssp HHHHCEECCCBCTTSSCCBCC-----------SSSSCCEECCBSCCCEEEEEEECC---------------CEEESCCHH
T ss_pred HHHHhCCCeEEecCCceEecc-----------cccccccccccccCeEEEEEEEEccccccccccccccCCeEEeCCCHH
Confidence 999999999888555433211 235677889999999999999997 7899999999
Q ss_pred HHhcCCceEEEEEcCCCcEEEEEccCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 239 EESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 239 Ee~~~~~~l~i~~~~~g~i~~i~~~G~~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
||+.+++.++|+++++|+++.+++.|+.+++.++ |.+|+++|.+++++|++++++++++.
T Consensus 227 Ee~~~~~~l~Va~~~~g~i~~l~~~g~~~~~~~~-l~~~l~~A~~~~~~i~~~~~~~l~~~ 286 (305)
T 2wp8_A 227 EELLRDGVLTVTLNKNREVVQVSKAGGLPMDALT-LMKCCHEAYSIIEKITDQILQLLKED 286 (305)
T ss_dssp HHHHCSEEEEEEECTTSEEEEEEEEEEEEECHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCcEEEEEcCCCcEEEEEecCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988899996 99999999999999999999999864
No 7
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.1e-56 Score=416.18 Aligned_cols=274 Identities=22% Similarity=0.474 Sum_probs=251.8
Q ss_pred cccccHHHHhhhChHHHHHHHHhcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeeccCCCCCCCc
Q 022140 11 SSEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDE 90 (302)
Q Consensus 11 ~~~~~~~~~~~~~p~~f~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~~p~~~~p~~ 90 (302)
.+.|..+......|++|++++|++++|+|||+++|+|++.+++| +++|||+|++|+|+|+|+|++++..|..++|++
T Consensus 14 ~~~~~~~~~~s~~e~~~i~~~L~~g~R~DGR~~~e~R~i~ie~g---~A~GSa~v~~G~T~VL~tV~~e~~~p~~~~~~~ 90 (358)
T 2nn6_A 14 PNSHMKETPLSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKLNRATE 90 (358)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHTTCCTTSCCTTCCCCCEEEEC---SSTTEEEEESSSCEEEEEECCEEECCCSTTTTS
T ss_pred cccccccccccHhHHHHHHHHHhcCCCCCCCCccccCCeEEEEe---cCCcEEEEEECCcEEEEEEEecccCCcccCCCC
Confidence 35677777888899999999999999999999999999999999 899999999999999999999998888888999
Q ss_pred ceEEEEEecCCCCCCCccCCCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHH
Q 022140 91 GCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSA 170 (302)
Q Consensus 91 g~l~v~V~~~~~~~~~~~~g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~ 170 (302)
|.+.++|+++|++++.+++|++++++++++++|++.|+++.++|+++|||+||+++|.|+|+++||++|||++||+++|+
T Consensus 91 g~l~~~v~~~p~a~~~~~~g~~s~~e~eisrli~r~Lr~s~~idl~~LcI~pg~~~w~I~Vdv~VL~~DGn~~dAai~Aa 170 (358)
T 2nn6_A 91 GILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAA 170 (358)
T ss_dssp CCEEEEEEECTTTCSSCCSSSTHHHHTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCCHHHHHHHH
T ss_pred cEEEEEEEecCCccccccCCCCCHHHHHHHHHHHHHhhhccccchHhhcccCCCccEEEEEEEEEEeCCCCHHHHHHHHH
Confidence 99999999999999988889888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCcEEecCCceeecCccccccccCcCccccccccccCCCccEEEEEEEE--CCEEEECCChHHHhcCCceEE
Q 022140 171 VAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILH--KNYILADPTSEEESIMETLVT 248 (302)
Q Consensus 171 ~~AL~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~--~~~~l~DPt~~Ee~~~~~~l~ 248 (302)
++||+++++|.+.+.++.+...+ ++++++.++.++++|+++|||++ ++.+|+|||.+||+.+++.++
T Consensus 171 ~aAL~da~iP~v~~~~~~v~i~~-----------~~~~~~~~l~i~~~p~avsvgl~~~~~~illDPt~~Ee~~~~~~l~ 239 (358)
T 2nn6_A 171 IVALCHFRRPDVSVQGDEVTLYT-----------PEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLV 239 (358)
T ss_dssp HHHHHHCCCCCCBCCTTCCBCCH-----------HHHTSCCCCCBCCCEEEEEEEECTTTSSEEESCCHHHHHHCSCEEE
T ss_pred HHHHHHhCcCcEEeeCCeeEecc-----------cccccccccCccCCEEEEEEEEEeeCCEEEECCCHHHHhhcCccEE
Confidence 99999999999888655433211 23567788999999999999988 789999999999999999999
Q ss_pred EEEcCCCcEEEEEccCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 249 VVLDSSNQLVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 249 i~~~~~g~i~~i~~~G~~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
|+++++|+|+.+++.|+.+++.++ +.+|+++|.+++++|++++++++++.
T Consensus 240 Va~t~~g~I~~lqk~G~~~ls~~~-l~~~l~~A~~~~~~i~~~~~~~l~~~ 289 (358)
T 2nn6_A 240 IAMNKHREICTIQSSGGIMLLKDQ-VLRCSKIAGVKVAEITELILKALEND 289 (358)
T ss_dssp EEEETTTEEEEEEEESCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCeEEEEEeCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999998899996 99999999999999999999999864
No 8
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=4.5e-57 Score=412.60 Aligned_cols=272 Identities=23% Similarity=0.308 Sum_probs=246.1
Q ss_pred HhhhChHHHHHHHHhcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeeccCCCCCCCcceEEEEEe
Q 022140 19 FRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFH 98 (302)
Q Consensus 19 ~~~~~p~~f~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~~p~~~~p~~g~l~v~V~ 98 (302)
+-...|++|++++|++++|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|++++..|..++|++|++.++|+
T Consensus 19 ~~s~~e~~~i~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~e~~~p~~~~~~~g~l~~~v~ 98 (305)
T 2nn6_E 19 TLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPNEGYLEFFVD 98 (305)
T ss_dssp CCCHHHHHHHHHHHHTTCCSSSCCSSCCCCCEEEECCCTTSSSEEEEEETTEEEEEECCCCCSCCCSSSCSSCCEEEECC
T ss_pred ccChhHHHHHHHHHhcCCCCCCCCCcCccCeEEEeCcccCCCcEEEEEECCeEEEEEEEEEeeCCCcCCCCceEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred cCCCCCCCccCCCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHHHHHHhhCC
Q 022140 99 MPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQ 178 (302)
Q Consensus 99 ~~~~~~~~~~~g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~~~AL~~~~ 178 (302)
++|++++.|+.+.++++++.++++|++.|+++++||+++||++||+++|.|+|+++||++|||++||+++|+++||++++
T Consensus 99 ~~p~a~~~~~~r~~~~~~~~isrli~r~lr~s~~idl~~L~i~p~~~~w~i~idv~VL~~DG~~~daai~aa~~AL~~a~ 178 (305)
T 2nn6_E 99 CSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTR 178 (305)
T ss_dssp CCTTTCSSCCTTSTHHHHHHHHHHHHHHHHHSCCSCSSSSCSSTTTCCCCEEEEEEECCCCSSHHHHHHHHHHHTTTTCC
T ss_pred eCCCcCccccCCCCchHHHHHHHHHHHHHhhcCcccHHHheeccCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcC
Confidence 99999988754444578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEec--CCceeecCccccccccCcCccccccccccCCCccEEEEEEEECCEEEECCChHHHhcCCceEEEEEcCCCc
Q 022140 179 IPTVSLD--DGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQ 256 (302)
Q Consensus 179 iP~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l~DPt~~Ee~~~~~~l~i~~~~~g~ 256 (302)
+|.+.+. ++.... +.+..++.+..++.++++|+++|||++++.+|+|||.+||+.+++.++|+++++|+
T Consensus 179 iP~~~~~~~~~~~~~---------i~~~~d~~~~~~l~l~~~p~avt~g~i~~~~l~Dpt~~Ee~~~~~~l~Va~~~~g~ 249 (305)
T 2nn6_E 179 IPRVRVLEDEEGSKD---------IELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGV 249 (305)
T ss_dssp CCEEEEECC---------------EEEEESSCCCSCCCCTTCCCCEEEEESSSSEESSCCHHHHTSCSEEEEECCCSSSC
T ss_pred CCeEEEecCCCCcee---------eeccCcccccccccccCceEEEEEEEECCEEEECCCHHHHhhcCCcEEEEEcCCCC
Confidence 9998872 222111 11223456788899999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 022140 257 LVSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGME 300 (302)
Q Consensus 257 i~~i~~~G~~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~~ 300 (302)
|+++++.|+..++.++ |.+|+++|.+++++|++++++++++++
T Consensus 250 i~~i~~~g~~~l~~~~-l~~~l~~A~~~~~~i~~~~~~~l~~~~ 292 (305)
T 2nn6_E 250 VTCMRKVGKGSLDPES-IFEMMETGKRVGKVLHASLQSVVHKEE 292 (305)
T ss_dssp CCEEEEEESSCBCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEccCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988899996 999999999999999999999998764
No 9
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.2e-48 Score=345.57 Aligned_cols=232 Identities=19% Similarity=0.279 Sum_probs=203.2
Q ss_pred ChHHHHHHHHhcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeee--ccCCCCCCCcceEEEEEecC
Q 022140 23 FPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEV--MTPSLESPDEGCVSIDFHMP 100 (302)
Q Consensus 23 ~p~~f~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v--~~p~~~~p~~g~l~v~V~~~ 100 (302)
.+..|.+..+++++|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|+|+. .+|..+.|++|.+.++|+++
T Consensus 3 ~~~~~~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~ 82 (240)
T 2wnr_B 3 TIITQDQLKTSPSVREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMA 82 (240)
T ss_dssp ------------CCCTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECCSSSSCCSSSCEEEEEEEEC
T ss_pred ceEeeeEeecccCccCCCCCcCCccCeEEEeCCCCCCCEEEEEEECCeEEEEEEEcCCCCCcccccCCCcEEEEEEEEeC
Confidence 4567888889999999999999999999999999999999999999999999999954 33455789999999999999
Q ss_pred CCCCCCccCCCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHHHHHHhhCCCC
Q 022140 101 PICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIP 180 (302)
Q Consensus 101 ~~~~~~~~~g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~~~AL~~~~iP 180 (302)
|++++.++.+++++++++++++|++.|++ .++++.| |+ |+|+|+++||++|||++||+++|+++||+|+++|
T Consensus 83 p~a~~~~~~~~~~~~~~~l~~ll~r~l~~--~i~l~~~---p~---~~I~i~~~VL~~dG~~~~a~i~aa~~AL~da~iP 154 (240)
T 2wnr_B 83 PFSVEERKRPGPDRRSVEISKITAEALRP--ALILEKF---PR---SVIDVFIEVLEAEGGTRCAGITAASVALADAGIP 154 (240)
T ss_dssp TTSSSSCCCSSCCHHHHHHHHHHHHHHGG--GBCGGGS---TT---EEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCC
T ss_pred CCCcCCccCCCCChhHHHHHHHHHHHHHH--hcCHHHC---CC---cEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCc
Confidence 99998887777889999999999999987 5777654 53 9999999999999999999999999999999998
Q ss_pred cEEecCCceeecCccccccccCcCccccccccccCCCccEEEEEEEECCEEEECCChHHHhcCCceEEEEE-cCCCcEEE
Q 022140 181 TVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVL-DSSNQLVS 259 (302)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l~DPt~~Ee~~~~~~l~i~~-~~~g~i~~ 259 (302)
++++|+++|++++++.+++|||.+||+.+++.++|++ +.+|+++.
T Consensus 155 ----------------------------------~~~~v~avs~g~~~~~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~ 200 (240)
T 2wnr_B 155 ----------------------------------MRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVAILPRTREITL 200 (240)
T ss_dssp ----------------------------------BSSCCEEEEEEESSSSEEESCCSHHHHSCSEEEEEEEETTTTEEEE
T ss_pred ----------------------------------cccceeeEEEEEECCEEEeCCCHHHhccCCceEEEEEECCCCCEEE
Confidence 5789999999999999999999999999999999998 67899999
Q ss_pred EEccCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 260 LYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 260 i~~~G~~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
+++.|+ ++.++ +.+|+++|.+++++|++.++++|+++
T Consensus 201 lq~~g~--~~~~~-l~~~l~~A~~~~~~i~~~~~~~l~~~ 237 (240)
T 2wnr_B 201 LQSDGN--LTPEE-FERALDLAVEGCLRIHEVQKEALRKR 237 (240)
T ss_dssp EEEEEC--BCHHH-HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred EEEEcc--cCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999985 78886 99999999999999999999999875
No 10
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=5.2e-48 Score=343.17 Aligned_cols=232 Identities=20% Similarity=0.216 Sum_probs=206.4
Q ss_pred ChHHHHHHHHhcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeeccCCC---CCCCcceEEEEEec
Q 022140 23 FPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL---ESPDEGCVSIDFHM 99 (302)
Q Consensus 23 ~p~~f~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~~p~~---~~p~~g~l~v~V~~ 99 (302)
+|..+++-.+++++|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|+++...|.. +.|++|.+.+++++
T Consensus 3 ~~~~~~~~i~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~g~l~~~~~~ 82 (249)
T 2nn6_B 3 DPMAGLELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSS 82 (249)
T ss_dssp --------CCBTTBCSSSSCTTSCCCEEEEESCSSSSSEEEEEEESSCEEEEEEEEEEECCSSSCCCCCSSCCEEEEEEE
T ss_pred ChhhhhhhcccCCcCCCCCCcCCcCCeEEEeCCCCCCCeEEEEEECCeEEEEEEEccCCccccccccCCCcEEEEEEEEc
Confidence 456666555688999999999999999999999999999999999999999999999876553 57899999999999
Q ss_pred CCCCCCCcc-CCCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHHHHHHhhCC
Q 022140 100 PPICSPLVR-PGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQ 178 (302)
Q Consensus 100 ~~~~~~~~~-~g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~~~AL~~~~ 178 (302)
+|++++.++ .+++++++++++++|++.|++ .++++.| | .|.|+|+++||++|||+++|+++|+++||+|++
T Consensus 83 ~p~a~~~~~~~~~~~~~~~~~~~ll~r~l~~--~i~~~~~---p---~~~I~i~~~VL~~dG~~~~A~i~aa~~AL~da~ 154 (249)
T 2nn6_B 83 ATFSTGERKRRPHGDRKSCEMGLQLRQTFEA--AILTQLH---P---RSQIDIYVQVLQADGGTYAACVNAATLAVLDAG 154 (249)
T ss_dssp CTTTSSSCCCTTTSTHHHHHHHHHHHHHHHH--TTCGGGC---T---TEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred CCCcccccccCCCCCHhHHHHHHHHHHHHHH--hcCHHHC---C---CcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcC
Confidence 999987764 567788999999999999986 6888765 4 399999999999999999999999999999999
Q ss_pred CCcEEecCCceeecCccccccccCcCccccccccccCCCccEEEEEEEECCEEEECCChHHHhcCCceEEEEEc-CCCcE
Q 022140 179 IPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLD-SSNQL 257 (302)
Q Consensus 179 iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l~DPt~~Ee~~~~~~l~i~~~-~~g~i 257 (302)
+| ++++|.++|++++++.+|+|||.+||+.+++.++|+++ ..|+|
T Consensus 155 iP----------------------------------l~~~v~avs~g~~~~~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i 200 (249)
T 2nn6_B 155 IP----------------------------------MRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQI 200 (249)
T ss_dssp CC----------------------------------CSSCCEEEEEEEETTEEEESCCHHHHTSSCCCEEEEEETTTTEE
T ss_pred Cc----------------------------------ccCCeeeEEEEEECCeEEECCChHHhccCCcEEEEEEECCCCCE
Confidence 98 67999999999999999999999999999999999995 77899
Q ss_pred EEEEccCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 258 VSLYKPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 258 ~~i~~~G~~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
+.+++.| .++.++ +.+|+++|.+++++|+++++++|++.
T Consensus 201 ~~lq~~g--~~~~~~-l~~~l~~A~~~~~~i~~~~~~~l~~~ 239 (249)
T 2nn6_B 201 ALLEMDA--RLHEDH-LERVLEAAAQAARDVHTLLDRVVRQH 239 (249)
T ss_dssp EEEEECS--CCBTTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEC--CcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999997 578886 99999999999999999999999764
No 11
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=100.00 E-value=4.5e-47 Score=337.14 Aligned_cols=226 Identities=20% Similarity=0.248 Sum_probs=206.5
Q ss_pred HHHHhcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEe--eeccCCCCCCCcceEEEEEecCCCCCCC
Q 022140 29 ERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKM--EVMTPSLESPDEGCVSIDFHMPPICSPL 106 (302)
Q Consensus 29 ~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~--~v~~p~~~~p~~g~l~v~V~~~~~~~~~ 106 (302)
+.++++++|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|+| +...|..+.|++|.+.++|+++|++++.
T Consensus 9 ~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~v~~~~~p~a~~~ 88 (249)
T 2po1_A 9 KLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVEE 88 (249)
T ss_dssp CCSBCSSCBTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGCCSSSCEEEEEEEECGGGSSS
T ss_pred EEecccCccCCCCCcccccCEEEEeCCcCCCCEEEEEEECCcEEEEEEEcCcccCcccccCCCceEEEEEEEeCCccccc
Confidence 44578899999999999999999999999999999999999999999999 5444456788999999999999999987
Q ss_pred ccCCCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHHHHHHhhCCCCcEEecC
Q 022140 107 VRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD 186 (302)
Q Consensus 107 ~~~g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~~~AL~~~~iP~~~~~~ 186 (302)
++.+.++++++.++++|++.|++ +++++.| |+ |.|+|+++||++|||+++|+++|+++||+|+++|
T Consensus 89 ~~~~~~~~~~~~~s~li~r~l~~--~i~l~~~---p~---~~i~I~~~VL~~dG~~~~aai~aa~~AL~da~iP------ 154 (249)
T 2po1_A 89 RKKPGPDRRSIEISKVIKGALEP--ALILEMF---PR---TAIDVFIEVLQADAGTRVAGITAASLALADAGIP------ 154 (249)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHGG--GBCGGGS---TT---EEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCC------
T ss_pred ccCCCCCHHHHHHHHHHHHHHHh--hccHHHC---CC---CEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCC------
Confidence 76666788999999999999987 6887654 64 9999999999999999999999999999999998
Q ss_pred CceeecCccccccccCcCccccccccccCCCccEEEEEEEECCEEEECCChHHHhcCCceEEEEE-cCCCcEEEEEccCC
Q 022140 187 GKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVL-DSSNQLVSLYKPGG 265 (302)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l~DPt~~Ee~~~~~~l~i~~-~~~g~i~~i~~~G~ 265 (302)
++++|+++|+|++++.+++|||.+||+.+++.++|++ +..|+|+.+++.|
T Consensus 155 ----------------------------~~~~v~avs~g~~~~~~l~Dp~~~Ee~~~~~~l~va~~~~~~~i~~~~~~g- 205 (249)
T 2po1_A 155 ----------------------------MRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDG- 205 (249)
T ss_dssp ----------------------------BSSCCEEEEEEEETTEEEESCCHHHHHTCSEEEEEEEEGGGTEEEEECCEE-
T ss_pred ----------------------------ccCceEEEEEEEECCEEEecCcHHHhccCCceEEEEEECCCCCEEEEEEEc-
Confidence 5788999999999999999999999999999999998 6788999999988
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 266 AVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 266 ~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
.++.++ +.+|+++|.+++++|++++++++++.
T Consensus 206 -~~~~~~-l~~~l~~A~~~~~~i~~~~~~~l~~~ 237 (249)
T 2po1_A 206 -YLTKDE-FIEAVKLAIKGAKAVYQKQREALKEK 237 (249)
T ss_dssp -CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478886 99999999999999999999999764
No 12
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=5.8e-46 Score=332.33 Aligned_cols=235 Identities=21% Similarity=0.255 Sum_probs=206.4
Q ss_pred hcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeeccCCCC-CCCcceEEEEEecCCCCCCCcc---
Q 022140 33 AESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE-SPDEGCVSIDFHMPPICSPLVR--- 108 (302)
Q Consensus 33 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~~p~~~-~p~~g~l~v~V~~~~~~~~~~~--- 108 (302)
..++|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|+++...|... .|++|++.+++++.|++++.|.
T Consensus 3 ~~g~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~p~a~~~~~~Re 82 (262)
T 3b4t_A 3 HVSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRE 82 (262)
T ss_dssp --CCSTTSCCTTCCCCEEEEETSSSSSSEEEEEEETTEEEEEEEEEEESCC----CCSCCEEEEEEEECGGGSSSCCCCH
T ss_pred CCCcCCCCCCCcCcCCeEEEeCCcCCCCeEEEEEECCCEEEEEEEecCcCCCccCCCCceEEEEEEEeCCCccccccccc
Confidence 357999999999999999999999999999999999999999999999877543 3789999999999999987763
Q ss_pred --CCCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHHHHHHhhCCCCcEEecC
Q 022140 109 --PGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD 186 (302)
Q Consensus 109 --~g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~~~AL~~~~iP~~~~~~ 186 (302)
+|++++++++++++|++.|++ +||++.| + + |+|+|+++||++|||+++|+++|+++||++++.|. +++
T Consensus 83 ~~~G~~~~~~~~isrli~r~lr~--~i~~~~l---~-~--~~I~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~--~~~ 152 (262)
T 3b4t_A 83 SVRGRLSGRTQEISRLIGRSLRA--CIDLAAL---G-E--NTIAIDCDVLQADGGTRTAAITGAYVALADAVTYL--SAA 152 (262)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHT--TBCHHHH---C-S--EEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHH--HHT
T ss_pred cCCCCCCHHHHHHHHHHHHHHHH--hcCHhHC---C-C--eEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhhhhh--ccC
Confidence 377889999999999999996 8898877 3 3 99999999999999999999999999999996432 111
Q ss_pred CceeecCccccccccCcCccccccc-cccCCCccEEEEEEEECCEEEECCChHHHhcCCceEEEEEcCCCcEEEEEccCC
Q 022140 187 GKIVMLPEEQKEENSEKEPVNKEKR-KLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG 265 (302)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~i~~~p~~vt~~~~~~~~l~DPt~~Ee~~~~~~l~i~~~~~g~i~~i~~~G~ 265 (302)
|. .. ++.++++|+++||+++++.+|+|||.+||+.+++.++|+++++|+|+++++.|+
T Consensus 153 ~~---------------------~~~~ip~~~~v~avsvg~~~g~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~i~~~g~ 211 (262)
T 3b4t_A 153 GK---------------------LSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGE 211 (262)
T ss_dssp TC---------------------CSSSCCBCSCEEEEEEEEETTEEEESCCHHHHTTCSEEEEEEEETTSCEEEEEECSS
T ss_pred Cc---------------------cccCCcccCceeEEEEEEECCEEEECCCHHHHhccCceEEEEEcCCCCEEEEEeeCC
Confidence 11 11 355899999999999999999999999999999999999999999999999885
Q ss_pred -cccChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 266 -AVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 266 -~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
..++.++ |.+|+++|.+.+++|++++++++++.
T Consensus 212 ~~~~~~~~-l~~~l~~A~~~~~~i~~~~~~~l~~~ 245 (262)
T 3b4t_A 212 GATFARST-LDKLLDMALGACDTLFAAQRDALALP 245 (262)
T ss_dssp CCCBCHHH-HHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCHHH-HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6799996 99999999999999999999999864
No 13
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=100.00 E-value=9e-46 Score=329.03 Aligned_cols=223 Identities=20% Similarity=0.274 Sum_probs=204.5
Q ss_pred HhcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeec--cCCCCCCCcceEEEEEecCCCCCCCccC
Q 022140 32 LAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVM--TPSLESPDEGCVSIDFHMPPICSPLVRP 109 (302)
Q Consensus 32 l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~--~p~~~~p~~g~l~v~V~~~~~~~~~~~~ 109 (302)
+++++|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|+++.. +|..+.|++|.+.++|+++|++++.++.
T Consensus 16 l~~~~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~g~~e~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~ 95 (250)
T 2je6_B 16 LDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKN 95 (250)
T ss_dssp CTTSCBTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEECTTSSSSCCC
T ss_pred cCCCccCCCCCccCcCCeEEEeCCCCCCCeEEEEEECCcEEEEEEEcccccccccccCCCcEEEEEEEEeCCCccCCccC
Confidence 68899999999999999999999999999999999999999999999653 3345678999999999999999988877
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHHHHHHhhCCCCcEEecCCce
Q 022140 110 GRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189 (302)
Q Consensus 110 g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~~~AL~~~~iP~~~~~~~~~ 189 (302)
|+++++++.++++|++.|++ .++++.+ | .|.|+|+++||++|||+++|+++|+++||+++++|
T Consensus 96 g~~~~~e~~~s~li~r~l~~--~i~~~~~---p---~~~i~I~~~VL~~DG~~~~aai~aa~~AL~~a~iP--------- 158 (250)
T 2je6_B 96 PAPSRREIELSKVIREALES--AVLVELF---P---RTAIDVFTEILQADAGSRLVSLMAASLALADAGIP--------- 158 (250)
T ss_dssp SSCCHHHHHHHHHHHHHHHT--TBCGGGS---T---TEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCC---------
T ss_pred CCCChhHHHHHHHHHHHHHh--hcCHhhC---C---CcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCC---------
Confidence 78889999999999999997 4776543 4 49999999999999999999999999999999998
Q ss_pred eecCccccccccCcCccccccccccCCCccEEEEEEEECCEEEECCChHHHhcCCceEEEEE-cCCCcEEEEEccCCccc
Q 022140 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVL-DSSNQLVSLYKPGGAVL 268 (302)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l~DPt~~Ee~~~~~~l~i~~-~~~g~i~~i~~~G~~~~ 268 (302)
++++|.++|++++++.+|+|||.+||+.+++.++|++ +..++|+++++.| .+
T Consensus 159 -------------------------~~~~v~avsvg~~~~~~l~Dpt~~Ee~~~~~~l~va~~~~~~~i~~v~~~g--~~ 211 (250)
T 2je6_B 159 -------------------------MRDLIAGVAVGKADGVIILDLNETEAMWGEADMPIAMMPSLNQVTLFQLNG--SM 211 (250)
T ss_dssp -------------------------BSSCCEEEEEEEETTEEEESCCHHHHHHSSEEEEEEEEGGGTEEEEEEEEE--CB
T ss_pred -------------------------ccCceEEEEEEEECCEEEeCCCHHHHhcCCceEEEEEECCCCCEEEEEEEc--cc
Confidence 5788999999999999999999999999999999999 5678999999988 57
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 269 AYTSAVQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 269 ~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
+.++ +.+|+++|.+.+++|++++++++++.
T Consensus 212 ~~~~-l~~~l~~A~~~~~~i~~~~~~~l~~~ 241 (250)
T 2je6_B 212 TPDE-FRQAFDLAVKGINIIYNLEREALKSK 241 (250)
T ss_dssp CHHH-HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8886 99999999999999999999999875
No 14
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=100.00 E-value=3.4e-46 Score=332.26 Aligned_cols=224 Identities=19% Similarity=0.281 Sum_probs=205.5
Q ss_pred HHHhcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeec--cCCCCCCCcceEEEEEecCCCCCCCc
Q 022140 30 RHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVM--TPSLESPDEGCVSIDFHMPPICSPLV 107 (302)
Q Consensus 30 ~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~--~p~~~~p~~g~l~v~V~~~~~~~~~~ 107 (302)
+++.+++|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|+|+.. .+....|++|.+.++++++|++++.+
T Consensus 10 ~~i~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~P~s~~~r 89 (258)
T 3m7n_D 10 KLIVDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEER 89 (258)
T ss_dssp CSEETTEETTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSSTTCCSSSCEEEEEEEECGGGSSSC
T ss_pred HHHhcCCCCCCCCcCCccCeEEEECCCCCCCceEEEEECCeEEEEEEEcccCCCCccccCCCceEEEEEEEeCCcccccc
Confidence 3456899999999999999999999999999999999999999999998543 23346789999999999999999887
Q ss_pred cCCCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHHHHHHhhCCCCcEEecCC
Q 022140 108 RPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDG 187 (302)
Q Consensus 108 ~~g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~~~AL~~~~iP~~~~~~~ 187 (302)
+.+++++++++++++|++.|++ .|+++.| | +|.|+|+++||++|||+++|+++|+++||+|+++|
T Consensus 90 ~~~~~~~re~ei~~li~r~l~~--~i~~~~~---p---~~~I~V~~~VL~~DG~~~~Aai~aa~lAL~dagiP------- 154 (258)
T 3m7n_D 90 KRPGPDRRSIEISKVSKEAFEA--VIMKELF---P---RSAIDIFVEVLQADAGSRTACLNAASVALVDAGVP------- 154 (258)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHT--TBCGGGS---T---TEEEEEEEEEEECCTTHHHHHHHHHHHHHHHTTCC-------
T ss_pred cCCCCCHHHHHHHHHHHHHHHh--hcCHHhC---C---ceEEEEEEEEEEcCCCHHHHHHHHHHHHHHhcCCC-------
Confidence 7788889999999999999997 6787765 4 59999999999999999999999999999999998
Q ss_pred ceeecCccccccccCcCccccccccccCCCccEEEEEEEECCEEEECCChHHHhcCCceEEEEE-cCC---CcEEEEEcc
Q 022140 188 KIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVL-DSS---NQLVSLYKP 263 (302)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l~DPt~~Ee~~~~~~l~i~~-~~~---g~i~~i~~~ 263 (302)
++++|.++|+|++++.+|+|||.+||+.+++.++|++ +.. |+|+.+++.
T Consensus 155 ---------------------------~~~~v~avsvg~i~~~~llDpt~~Ee~~~~~d~~va~~~~~~~~~~I~~lq~~ 207 (258)
T 3m7n_D 155 ---------------------------MKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMD 207 (258)
T ss_dssp ---------------------------BSSEEEEEEEEEETTEEEESCCHHHHHHSSEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ---------------------------CCCceEEEEEEEECCEEEECCCHHHHhccCceEEEEEEcCCCCCCCEEEEEec
Confidence 5789999999999999999999999999999999999 677 899999998
Q ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022140 264 GGAVLAYTSAVQDCIALTRQRVKELHQILEEAISG 298 (302)
Q Consensus 264 G~~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~ 298 (302)
| .++.++ +.+|+++|.+.+++|++++++++++
T Consensus 208 g--~~~~~~-l~~~l~~A~~~~~~i~~~~~~~l~~ 239 (258)
T 3m7n_D 208 G--RMTRDE-VKQAIELAKKGALQIYEMQREAILR 239 (258)
T ss_dssp E--EECHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 789996 9999999999999999999999875
No 15
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=100.00 E-value=1.9e-45 Score=324.92 Aligned_cols=231 Identities=19% Similarity=0.305 Sum_probs=203.2
Q ss_pred CCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeeccCCCC-CCCcceEEEEEecCCCCCCCcc-----C
Q 022140 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLE-SPDEGCVSIDFHMPPICSPLVR-----P 109 (302)
Q Consensus 36 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~~p~~~-~p~~g~l~v~V~~~~~~~~~~~-----~ 109 (302)
.|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|+++...|... .|++|.+.+++++.|++++.+. +
T Consensus 2 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~p~~~~~r~~Re~~~ 81 (239)
T 1r6l_A 2 NRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTAEYGMLPRSTGERNQREASR 81 (239)
T ss_dssp CCTTCCCTTCCCCEEEESSCSSSSSEEEEEEETTEEEEEEEEEEESCSSCCC---CCEEEEEEEECTTSSSSCCCCHHHH
T ss_pred cCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCEEEEEEEEccCccCCccCCCCcEEEEEEEEeCCCccccccccccCC
Confidence 499999999999999999999999999999999999999999999877543 4789999999999999987652 3
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHHHHHHhhCCCCcEEecCCce
Q 022140 110 GRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189 (302)
Q Consensus 110 g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~~~AL~~~~iP~~~~~~~~~ 189 (302)
|++++.+++++++|++.|++ ++|++.| ++ |.|+|+++||++|||+++|+++|+++||+|++.|.. ++|
T Consensus 82 G~~~~~~~~isrli~r~l~~--~i~~~~l----~~--~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~--~~~-- 149 (239)
T 1r6l_A 82 GKQGGRTLEIQRLIGRSLRA--ALDLSKL----GE--NTLYIDCDVIQADGGTRTASITGATVALIDALAVLK--KRG-- 149 (239)
T ss_dssp TSCCHHHHHHHHHHHHHHHH--TBCGGGT----CS--EEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHH--HTT--
T ss_pred CCCcHHHHHHHHHHHHHHHH--hcCHHHc----CC--eEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhcchhc--ccC--
Confidence 77889999999999999996 8998887 23 889999999999999999999999999999984421 111
Q ss_pred eecCccccccccCcCccccccccccCCCccEEEEEEEECCEEEECCChHHHhcCCceEEEEEcCCCcEEEEEccC-Cccc
Q 022140 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG-GAVL 268 (302)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l~DPt~~Ee~~~~~~l~i~~~~~g~i~~i~~~G-~~~~ 268 (302)
+..++.++++|+++||+++++.+++|||.+||+.+++.++|+++++|+++.+++.| +..+
T Consensus 150 -------------------~~~~ip~~~~~~avs~g~~~~~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~~~~~g~~~~~ 210 (239)
T 1r6l_A 150 -------------------ALKGNPLKQMVAAVSVGIYQGVPVLDLDYLEDSAAETDLNVVMTDAGGFIEVQGTAEGAPF 210 (239)
T ss_dssp -------------------CCSSCCBCCCEEEEEEEEETTEEEESCCHHHHHHCSEEEEEEEETTSCEEEEEEEESSSCC
T ss_pred -------------------cccccCccCceeEEEEEEECCEEEECCCHHHHhcCCceEEEEEeCCCCEEEEEEeCCCCCc
Confidence 11235689999999999999999999999999999999999999999999999987 4679
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022140 269 AYTSAVQDCIALTRQRVKELHQILEEAISG 298 (302)
Q Consensus 269 ~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~ 298 (302)
+.++ +.+|+++|.+.+++|++++++++++
T Consensus 211 ~~~~-l~~~l~~a~~~~~~i~~~~~~~l~~ 239 (239)
T 1r6l_A 211 RPAE-LNAMLELAQQGMQELFELQRAALAE 239 (239)
T ss_dssp CHHH-HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9996 9999999999999999999999864
No 16
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=100.00 E-value=9.9e-46 Score=329.51 Aligned_cols=231 Identities=18% Similarity=0.286 Sum_probs=205.8
Q ss_pred CCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeeccCCC-CCCCcceEEEEEecCCCCCCCc-----cC
Q 022140 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL-ESPDEGCVSIDFHMPPICSPLV-----RP 109 (302)
Q Consensus 36 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~~p~~-~~p~~g~l~v~V~~~~~~~~~~-----~~ 109 (302)
+|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|+++...|+. ..|++|++.+++++.|++++.+ .+
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~~P~a~~~r~~Re~~~ 80 (255)
T 1udn_A 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWITAEYSMLPRATQQRTIRESVQ 80 (255)
T ss_dssp -CTTSCCTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECSCCTTSCCCCSSTT
T ss_pred CCCCCCCCCCccCeEEEECCCCCCCEEEEEEECCEEEEEEEEcCCcCCCCCCCCCceEEEEEEEcCCCccccccccccCC
Confidence 59999999999999999999999999999999999999999999877643 4578999999999999998765 24
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHHHHHHhhCCCCcEEecCCce
Q 022140 110 GRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189 (302)
Q Consensus 110 g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~~~AL~~~~iP~~~~~~~~~ 189 (302)
|++++++++++++|++.|++ +||++.| ++ |.|+|+++||++|||+++|+++|+++||+|++.|.+ +.|
T Consensus 81 G~~~~~~~eisrli~r~lr~--~i~~~~l----~~--~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~--~~~-- 148 (255)
T 1udn_A 81 GRIGGRTHEIQRMIGRAMRT--AVELTKI----GE--RTIWVDCDVIQADGGTRTAAITGAFVAVADAIIKLH--KEG-- 148 (255)
T ss_dssp CSCCHHHHHHHHHHHHHHHH--HBCGGGG----CS--CEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHH--HTT--
T ss_pred CCCCHHHHHHHHHHHHHHHH--hcCHHHc----CC--eEEEEEEEEEeCCCCHHHHHHHHHHHHHHhhcchhc--ccC--
Confidence 77889999999999999996 8998887 23 999999999999999999999999999999995421 111
Q ss_pred eecCccccccccCcCccccccccccCCCccEEEEEEEECCEEEECCChHHHhcCCceEEEEEcCCCcEEEEEccCC-ccc
Q 022140 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG-AVL 268 (302)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l~DPt~~Ee~~~~~~l~i~~~~~g~i~~i~~~G~-~~~ 268 (302)
+..++.++++|+++|++++++.+|+|||.+||+.+++.++|+++++|+++.+++.|+ ..+
T Consensus 149 -------------------~~~~ipl~~~v~avsvg~~~g~~llDpt~~Ee~~~~~~l~va~~~~g~i~~~q~~g~~~~~ 209 (255)
T 1udn_A 149 -------------------IIEETPIKDFVAAVSVGIVNDRILLDLNFEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSF 209 (255)
T ss_dssp -------------------SSSSCCBCCCEEEEEEEEETTEEEESCCHHHHHTCSEEEEEEEETTSCEEEEEEEESSCCC
T ss_pred -------------------cccCCCccCceeEEEEEEECCEEEECCCHHHHhhCCCCEEEEEeCCCCEEEEEEeCCCCCc
Confidence 123466899999999999999999999999999999999999999999999999873 679
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022140 269 AYTSAVQDCIALTRQRVKELHQILEEAISG 298 (302)
Q Consensus 269 ~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~ 298 (302)
+.++ |.+|+++|.+.+++|++++++++++
T Consensus 210 ~~~~-l~~~l~~A~~~~~~i~~~~~~~l~~ 238 (255)
T 1udn_A 210 TKDE-LIKMLDLAQKGINELIELQKKLYVI 238 (255)
T ss_dssp CHHH-HHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9996 9999999999999999999999875
No 17
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=100.00 E-value=6.3e-46 Score=329.08 Aligned_cols=232 Identities=19% Similarity=0.315 Sum_probs=190.1
Q ss_pred CCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeeccCC-CCCCCcceEEEEEecCCCCCCCc-----cC
Q 022140 36 IRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPS-LESPDEGCVSIDFHMPPICSPLV-----RP 109 (302)
Q Consensus 36 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~~p~-~~~p~~g~l~v~V~~~~~~~~~~-----~~ 109 (302)
+|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|+++...|. ...|++|.+.++++++|++++.+ .+
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~~p~a~~~~~~Re~~~ 80 (245)
T 1oys_A 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPQATNQQTIQESSK 80 (245)
T ss_dssp CCTTSCCTTCCCCEEEECC-----CCCEEEEETTEEEEEEEEEESCCCGGGTTSCCCEEEEEEEC---------------
T ss_pred CCCCCCCCCCcCCeEEEeCCCCCCCEEEEEEECCeEEEEEEEeccccCCccCCCCceEEEEEEEeCCCcCcccccccccC
Confidence 4999999999999999999999999999999999999999999988774 35689999999999999998765 24
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHHHHHHhhCCCCcEEecCCce
Q 022140 110 GRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKI 189 (302)
Q Consensus 110 g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~~~AL~~~~iP~~~~~~~~~ 189 (302)
|++++++++++++|++.|++ +||++.| + + |.|+|+++||++|||+++|+++|+++||+|++.|.+ +.
T Consensus 81 G~~~~~~~eis~li~r~l~~--~i~~~~l---~-~--~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~--~~--- 147 (245)
T 1oys_A 81 GKISGRTMEIQRLIGRALRA--VVDLEKL---G-E--RTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLI--KA--- 147 (245)
T ss_dssp ----CHHHHHHHHHHHHHHH--TBCHHHH---C-S--CEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHH--HT---
T ss_pred CCCchHHHHHHHHHHHHHHH--hcCHhHC---C-C--EEEEEEEEEEeCCCCHHHHHHHHHHHHHHhccchhc--cc---
Confidence 67889999999999999996 8898887 2 3 688899999999999999999999999999997642 11
Q ss_pred eecCccccccccCcCccccccccccCCCccEEEEEEEECCEEE-ECCChHHHhcCCceEEEEEcCCCcEEEEEccCC-cc
Q 022140 190 VMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYIL-ADPTSEEESIMETLVTVVLDSSNQLVSLYKPGG-AV 267 (302)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l-~DPt~~Ee~~~~~~l~i~~~~~g~i~~i~~~G~-~~ 267 (302)
.+..++.|+++|.++|+|++++.++ +|||.+||+.+++.++|+++++|+++.+++.|+ ..
T Consensus 148 ------------------~~~~~ipl~~~v~avs~g~~~g~~vl~Dp~~~Ee~~~~~~~~v~~~~~g~i~~iq~~g~~~~ 209 (245)
T 1oys_A 148 ------------------GTIKTNPITDFLAAISVGIDKEQGILLDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEAT 209 (245)
T ss_dssp ------------------TSSSSCCBCSCEEEEEEEEETTTEEEESCCHHHHHHEEEEEEEEEETTSCEEEEEEEESSCC
T ss_pred ------------------CcccccCCCCceeEEEEEEECCEEEEecCCHHHHhcCCCcEEEEEcCCCcEEEEEEeCCCCC
Confidence 1234577899999999999998777 999999999999999999999999999999874 67
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 268 LAYTSAVQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 268 ~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
++.++ |.+|+++|.+++++|+++++++++++
T Consensus 210 ~~~~~-l~~~l~~A~~~~~~i~~~~~~~l~~~ 240 (245)
T 1oys_A 210 FSRED-LNGLLGLAEKGIQELIDKQKEVLGDS 240 (245)
T ss_dssp CCHHH-HHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99996 99999999999999999999999864
No 18
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-45 Score=326.58 Aligned_cols=222 Identities=15% Similarity=0.186 Sum_probs=191.2
Q ss_pred HhcCCCCCCCCCCCCcceEEEeCCccCC-CeeEEEEeCCeEEEEEEEeeecc--CCCCCCCcceEEEEEecCCCCCCCcc
Q 022140 32 LAESIRPDARSLSRARNTTISMGAVASA-DGSALAKIGSTTMLAAIKMEVMT--PSLESPDEGCVSIDFHMPPICSPLVR 108 (302)
Q Consensus 32 l~~~~R~DGR~~~e~R~i~i~~g~l~~a-~GSa~v~~G~T~Vi~~V~~~v~~--p~~~~p~~g~l~v~V~~~~~~~~~~~ 108 (302)
+++++|+|||+++|+|++.+++|.++++ +|||+|++|+|+|+|+|+++... |..+.|++|.+.++++++|++++.+.
T Consensus 8 ~~~~~R~DGR~~~e~R~i~i~~g~l~~aa~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~~~~~ 87 (246)
T 2wp8_B 8 SPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNINKFSKFERS 87 (246)
T ss_dssp CTTSCCTTSCCTTCCCCEEEEECSCTTTCSEEEEEEETTEEEEEEEEEEEC------CCSSSEEEEEEEEEC--------
T ss_pred cccCccCCCCCcCCccCeEEEeCCCCCCCCceEEEEECCeEEEEEEEecCCcccccccCCCcEEEEEEEEeCCccccccc
Confidence 4789999999999999999999999999 99999999999999999998862 34567899999999999999988765
Q ss_pred C--CCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHHHHHHhhCCCCcEEecC
Q 022140 109 P--GRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD 186 (302)
Q Consensus 109 ~--g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~~~AL~~~~iP~~~~~~ 186 (302)
+ |+++++++.++++|++.|++ .++++.| | +|.|+|+++||++|||+++|+++|+++||+|+++|
T Consensus 88 ~r~g~~~~~~~~~s~li~r~l~~--~i~~~~~---p---~~~I~i~~~VL~~dG~~~~aai~aa~~AL~~a~iP------ 153 (246)
T 2wp8_B 88 KSSHKNERRVLEIQTSLVRMFEK--NVMLNIY---P---RTVIDIEIHVLEQDGGIMGSLINGITLALIDAGIS------ 153 (246)
T ss_dssp ------CHHHHHHHHHHHHHHHH--HBCTTTS---C---SEEEEEEEEEEECCSCHHHHHHHHHHHHHHHHTCC------
T ss_pred ccCCCCChhHHHHHHHHHHHHHH--hhhHHHC---C---CeEEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCc------
Confidence 4 56678999999999999987 5676654 3 69999999999999999999999999999999998
Q ss_pred CceeecCccccccccCcCccccccccccCCCccEEEEEEEECCEEEECCChHHHhcCCceEEEEE-cCCCcEEEEEccCC
Q 022140 187 GKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVL-DSSNQLVSLYKPGG 265 (302)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l~DPt~~Ee~~~~~~l~i~~-~~~g~i~~i~~~G~ 265 (302)
++++|.++|+|++++.+++|||.+|| .+++.++|++ +..++|+.+++.|
T Consensus 154 ----------------------------~~~~v~avs~g~~~~~~l~Dp~~~Ee-~~~~~l~v~~~~~~~~i~~i~~~g- 203 (246)
T 2wp8_B 154 ----------------------------MFDYISGISVGLYDTTPLLDTNSLEE-NAMSTVTLGVVGKSEKLSLLLVED- 203 (246)
T ss_dssp ----------------------------BSSCEEEEEEEEETTEEESSCCHHHH-HHSEEEEEEEETTSSCEEEEEECS-
T ss_pred ----------------------------ccCceeEEEEEEECCEEEECCCchhh-ccCceEEEEEeCCCCCEEEEEecC-
Confidence 57899999999999999999999999 9999999999 5788999999855
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 266 AVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 266 ~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
.++.++ +.+|+++|.+.+++|++++++++++.
T Consensus 204 -~~~~~~-l~~~l~~A~~~~~~i~~~~~~~l~~~ 235 (246)
T 2wp8_B 204 -KIPLDR-LENVLAIGIAGAHRVRDLMDEELRKH 235 (246)
T ss_dssp -CEEHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678886 99999999999999999999998764
No 19
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=100.00 E-value=2.3e-45 Score=326.54 Aligned_cols=235 Identities=18% Similarity=0.294 Sum_probs=209.0
Q ss_pred hcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeeccC-CCCCCCcceEEEEEecCCCCCCCcc---
Q 022140 33 AESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTP-SLESPDEGCVSIDFHMPPICSPLVR--- 108 (302)
Q Consensus 33 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~~p-~~~~p~~g~l~v~V~~~~~~~~~~~--- 108 (302)
....|.|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|+++...| ....|++|++.++++++|++++.++
T Consensus 8 ~~~~~~~~R~~~e~R~i~i~~g~~~~A~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~P~a~~~~~~Re 87 (255)
T 3dd6_A 8 HHHMRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRATEQRTIRE 87 (255)
T ss_dssp ---CCCCSCCTTCCCCEEEEESCSSSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECTTSSSSCCCCC
T ss_pred ccccccCCCCcCCCCCEEEEECCCCCCCeEEEEEECCeEEEEEEEecCCCCCCCCCCCceEEEEEEEECCCccccccccc
Confidence 346899999999999999999999999999999999999999999988654 4567899999999999999988763
Q ss_pred --CCCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHHHHHHhhCCCCcEEecC
Q 022140 109 --PGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDD 186 (302)
Q Consensus 109 --~g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~~~AL~~~~iP~~~~~~ 186 (302)
+|++++++++++++|++.|++ +||++.| + + |+|+|+++||++|||+++|+++|+++||+++++|.+ .+
T Consensus 88 ~~~g~~~~~~~eisrli~r~lr~--~i~~~~l---~-~--~~I~V~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~--~~ 157 (255)
T 3dd6_A 88 SSKGKVTGRTMEIQRLIGRALRA--VVDLEAL---G-E--RTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKLL--QA 157 (255)
T ss_dssp CC-CCCCHHHHHHHHHHHHHHHH--HBCHHHH---C-S--CEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHH--HT
T ss_pred ccCCCCCHHHHHHHHHHHHHHHH--hcChhhc---C-C--eEEEEEEEEEECCCCHHHHHHHHHHHHHHHhhhhhh--hc
Confidence 277889999999999999997 7888876 2 3 999999999999999999999999999999998853 11
Q ss_pred CceeecCccccccccCcCccccccccccCCCccEEEEEEEECCEEE-ECCChHHHhcCCceEEEEEcCCCcEEEEEccC-
Q 022140 187 GKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYIL-ADPTSEEESIMETLVTVVLDSSNQLVSLYKPG- 264 (302)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l-~DPt~~Ee~~~~~~l~i~~~~~g~i~~i~~~G- 264 (302)
| +..++.++++|.++|+|++++.++ +|||.+||+.++..++|+++++|+|+.+++.|
T Consensus 158 g---------------------~~~~iPl~~~v~avsvg~i~g~~vllDpt~~Ee~~~~~~l~Va~~~~g~i~~vq~~g~ 216 (255)
T 3dd6_A 158 E---------------------KVSKIPVKDYLAATSVGIVEEQGVVLDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGE 216 (255)
T ss_dssp T---------------------SSSSCCBSSCEEEEEEEEETTTEEEESCCHHHHHTEEEEEEEEEETTSCEEEEEEEES
T ss_pred C---------------------cccCCCccCceeEEEEEEECCEEEEeCCCHHHHhhcCceEEEEEcCCCcEEEEEecCC
Confidence 1 122356899999999999999888 99999999999999999999999999999987
Q ss_pred CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 265 GAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 265 ~~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
+..++.++ +.+|+++|.+.+++|++++++++++.
T Consensus 217 ~~~~~~~~-l~~~l~~A~~~~~~i~~~~~~~l~~~ 250 (255)
T 3dd6_A 217 EATFSRAQ-LNELLDAAEQGIFQLIDIQKEALGDI 250 (255)
T ss_dssp SSCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCCcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899996 99999999999999999999999864
No 20
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.2e-44 Score=319.31 Aligned_cols=218 Identities=19% Similarity=0.267 Sum_probs=177.4
Q ss_pred HHHHhcCCCCCCCCCC----CCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeec-cCCCCCCCcceEEEEEecCCCC
Q 022140 29 ERHLAESIRPDARSLS----RARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVM-TPSLESPDEGCVSIDFHMPPIC 103 (302)
Q Consensus 29 ~~~l~~~~R~DGR~~~----e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~-~p~~~~p~~g~l~v~V~~~~~~ 103 (302)
.+...+++|+|||+++ |+|++.+++|.+++++|||+|++|+|+|+|+|+++.. .|..+.|++|.+.+ +|+|+
T Consensus 9 ~~~~~~~~R~DGR~~~~~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~g~l~~--~~~p~- 85 (237)
T 2nn6_D 9 TDAKIRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEV--ILRPK- 85 (237)
T ss_dssp ------------------CCCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECC------CCEEEEE--EEECS-
T ss_pred CCCCccCccCCCCCCCCccccccceEEEeCCCCCCCEEEEEEECCcEEEEEEeCCCcccccccCCCcEEEEE--EecCC-
Confidence 3456778999999999 9999999999999999999999999999999999987 45566778886665 45664
Q ss_pred CCCccCCCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHHHHHHhhCCCCcEE
Q 022140 104 SPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVS 183 (302)
Q Consensus 104 ~~~~~~g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~~~AL~~~~iP~~~ 183 (302)
.|++++++++++++|++.|++ +|+.+++.+|.|+|+++||++|||+++|+++|+++||+|+++|
T Consensus 86 -----~g~~~~~e~~~~~li~r~l~~--------~i~~~~~p~~~I~I~~~VL~~dG~~~~aai~aa~~AL~da~iP--- 149 (237)
T 2nn6_D 86 -----IGLPGVAEKSRERLIRNTCEA--------VVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP--- 149 (237)
T ss_dssp -----SSCCCHHHHHHHHHHHHHHHH--------HCGGGCSSSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCC---
T ss_pred -----CCCCCccHHHHHHHHHHHHHH--------HhchhcCCceEEEEEEEEEECCCcHHHHHHHHHHHHHHHcCCC---
Confidence 366778899999999999864 3555667789999999999999999999999999999999998
Q ss_pred ecCCceeecCccccccccCcCccccccccccCCCccEEEEEEEE-CCEEEECCChHHHhcCCceEEEEEcCCC-cEEEEE
Q 022140 184 LDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILH-KNYILADPTSEEESIMETLVTVVLDSSN-QLVSLY 261 (302)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~-~~~~l~DPt~~Ee~~~~~~l~i~~~~~g-~i~~i~ 261 (302)
++++|.++|+|++ ++.+++||+.+||+.+.+.++|+++.++ +|+.++
T Consensus 150 -------------------------------~~~~v~avs~g~~~~~~~llDp~~~Ee~~~~~~~~v~~~~~~~~i~~lq 198 (237)
T 2nn6_D 150 -------------------------------MRALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFALDSVERKLLMSS 198 (237)
T ss_dssp -------------------------------CSSCEEEEEEEECTTCCEEESCCHHHHHHCSEEEEEEEETTTCCCCEEE
T ss_pred -------------------------------cccCeeeEEEEEecCCcEEeCCCHHHHhccCCceEEEEcCCCCCEEEEE
Confidence 5799999999999 7899999999999999999999999876 899999
Q ss_pred ccCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 262 KPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 262 ~~G~~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
+.| .++.++ +.+|+++|.+++++|+++++++++++
T Consensus 199 ~~g--~~~~~~-l~~~l~~A~~~~~~i~~~~~~~l~~~ 233 (237)
T 2nn6_D 199 TKG--LYSDTE-LQQCLAAAQAASQHVFRFYRESLQRR 233 (237)
T ss_dssp EEE--SCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeC--CcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 987 578886 99999999999999999999999864
No 21
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=100.00 E-value=2.9e-43 Score=311.26 Aligned_cols=214 Identities=20% Similarity=0.269 Sum_probs=178.3
Q ss_pred cCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeec-cCCCCCCCcceEEEEEecCCCCCCCccCCCC
Q 022140 34 ESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVM-TPSLESPDEGCVSIDFHMPPICSPLVRPGRP 112 (302)
Q Consensus 34 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~-~p~~~~p~~g~l~v~V~~~~~~~~~~~~g~~ 112 (302)
+++|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|+|+.. .|..+.|+++.+ +|.|+|. .|++
T Consensus 2 eg~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~~--~~~~~P~------~g~~ 73 (246)
T 3hkm_A 2 EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASI--EVVWKPM------TGQI 73 (246)
T ss_dssp ---CTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEECCCEECCCTTSCSSSCEE--EEEEECS------SSCC
T ss_pred CCcCCCCCCCCCcCCeEEEECCCCCCCeEEEEEECCeEEEEEEecCcCCCcccCCCccEEE--EEEeCCC------CCCC
Confidence 589999999999999999999999999999999999999999999763 455566766665 4556673 3667
Q ss_pred CCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHHHHHHhhCCCCcEEecCCceeec
Q 022140 113 AEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVML 192 (302)
Q Consensus 113 ~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~~~AL~~~~iP~~~~~~~~~~~~ 192 (302)
++.+.+++++|++.|++ +|+.+++.+|.|+|+++||++|||+++|+++|+++||+++++|
T Consensus 74 ~~~~~e~~~li~r~l~~--------l~~~~~~~~~~I~v~~~VL~~dG~~~~aai~aa~~AL~dagiP------------ 133 (246)
T 3hkm_A 74 GKQEKEYEMTLKRTLQS--------ICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIP------------ 133 (246)
T ss_dssp CTTHHHHHHHHHHHHHH--------HBCTTSSCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCC------------
T ss_pred ChhHHHHHHHHHHHHHH--------hcCccCCCcEEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCC------------
Confidence 77889999999999865 4556677789999999999999999999999999999999998
Q ss_pred CccccccccCcCccccccccccCCCccEEEEEEEE-CCEEEECCChHHHhcCCceEEEEEcCCCcEEEEEccC-------
Q 022140 193 PEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILH-KNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPG------- 264 (302)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~-~~~~l~DPt~~Ee~~~~~~l~i~~~~~g~i~~i~~~G------- 264 (302)
++++|.++|++++ ++.+|+|||.+||+.+++.++|++++++ +|.+++.|
T Consensus 134 ----------------------~~~~v~avs~g~~~~g~~llDpt~~Ee~~~~~~~~va~~~~~-i~~lq~~g~~~~~~~ 190 (246)
T 3hkm_A 134 ----------------------LKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSR-KSASSKEPNQKEEDS 190 (246)
T ss_dssp ----------------------BSSCEEEEEEEECTTSCEEESCCHHHHTTCSEEEEEEEEC------------------
T ss_pred ----------------------CCCceEEEEEEEEECCEEEECCCHHHHhcCCeeEEEEEeCCc-eEEEeeccccccccc
Confidence 5789999999998 7899999999999999999999999884 88888866
Q ss_pred ---------CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 265 ---------GAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 265 ---------~~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
+..++.++ +.+|+++|.+.+++|+++++++|++.
T Consensus 191 ~~~~i~~~~~g~~~~~~-l~~~l~~A~~~~~~i~~~~~~~l~~~ 233 (246)
T 3hkm_A 191 ERGLITSITHGVMSEED-YFSCIERGLAASSRISDFMRTTLQKQ 233 (246)
T ss_dssp ---CCCEEEEECEEHHH-HHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred ccceeeeeccCCcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45789886 99999999999999999999999864
No 22
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=7.2e-44 Score=320.45 Aligned_cols=230 Identities=21% Similarity=0.230 Sum_probs=193.2
Q ss_pred hChHHHHHHHHhcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeeccCCC-C------------CC
Q 022140 22 LFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL-E------------SP 88 (302)
Q Consensus 22 ~~p~~f~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~~p~~-~------------~p 88 (302)
..|..|+. ++++|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|+++...+.. + .+
T Consensus 15 ~~~~~~~~---~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (272)
T 2nn6_F 15 QPPQLYAA---DEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAA 91 (272)
T ss_dssp -----------------CCCCSSCCCCCCCCCSCCSSSSEEECCCSSSCEEEEEEEEEECC-------------------
T ss_pred cCCccccc---ccCccCCCCCccccCCeEEEeCCCCCCCeEEEEEeCCeEEEEEEECCCcccccccccccccccccccCC
Confidence 34556654 77899999999999999999999999999999999999999999998876542 2 56
Q ss_pred CcceEEEEEecCCCCCCCccCCCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHH
Q 022140 89 DEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALL 168 (302)
Q Consensus 89 ~~g~l~v~V~~~~~~~~~~~~g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~ 168 (302)
++|.+.++|++.|+++..++.+++++.++.++++|++.|++ .++++. +| .|.|+|+++||++|||+++|+++
T Consensus 92 ~~g~l~v~~~~~p~a~~~~~~~~~~~~e~~~s~li~r~l~~--~i~~~~---~p---~~~I~I~~~VL~~DG~~~~aai~ 163 (272)
T 2nn6_F 92 LRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALEP--AVRLGR---YP---RAQLEVSALLLEDGGSALAAALT 163 (272)
T ss_dssp CBCEEEEEEEECTTSSSSCCCSCCHHHHHHHHHHHHHHHTT--TBCSTT---SB---TCEEEEEEEEEECCSSHHHHHHH
T ss_pred CceEEEEEEEecCCCcCCccCCCCCHHHHHHHHHHHHHHHH--hccHHH---CC---ceEEEEEEEEEeCCCCHHHHHHH
Confidence 78999999999999998888888889999999999999987 466543 34 39999999999999999999999
Q ss_pred HHHHHHhhCCCCcEEecCCceeecCccccccccCcCccccccccccCCCccEEEEEEE---ECCEEEECCChHHHhcCCc
Q 022140 169 SAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCIL---HKNYILADPTSEEESIMET 245 (302)
Q Consensus 169 A~~~AL~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~---~~~~~l~DPt~~Ee~~~~~ 245 (302)
|+++||+++++| +++++.++|+++ .++.+|+|||.+||+.+++
T Consensus 164 aa~~AL~da~iP----------------------------------~~~~v~avsvg~~~~~~~~~llDpt~~Ee~~~~~ 209 (272)
T 2nn6_F 164 AAALALADAGVE----------------------------------MYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAA 209 (272)
T ss_dssp HHHHHHHHHCCC----------------------------------BSSCCEEEECCCCSCSSCCCCSSCCTTTGGGCSS
T ss_pred HHHHHHHHcCCc----------------------------------ccCcEEEEEEEEeeccCCeEEeCCCHHHhccCCc
Confidence 999999999998 468889999999 8889999999999999999
Q ss_pred eEEEEE-cCCCcEEEEEccCCcccCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 246 LVTVVL-DSSNQLVSLYKPGGAVLAY-TSAVQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 246 ~l~i~~-~~~g~i~~i~~~G~~~~~~-~~~l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
.++|++ +..++|+++++.| .++. ++ |.+|+++|.+.+++|++++++++++.
T Consensus 210 ~l~va~~~~~~~I~~i~~~g--~~~~~~~-l~~~l~~A~~~~~~i~~~~~~~l~~~ 262 (272)
T 2nn6_F 210 GLTVALMPVLNQVAGLLGSG--EGGLTES-WAEAVRLGLEGCQRLYPVLQQSLVRA 262 (272)
T ss_dssp EEEEEEETTTTEEEEEEEEC--CSSCTTT-THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCEEEEEEec--CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997 5678999999988 4677 85 99999999999999999999998764
No 23
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=4e-39 Score=316.25 Aligned_cols=240 Identities=15% Similarity=0.183 Sum_probs=215.0
Q ss_pred ccHHHHhhhChHHHHHHHHhcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeeccCCC--C-----
Q 022140 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSL--E----- 86 (302)
Q Consensus 14 ~~~~~~~~~~p~~f~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~~p~~--~----- 86 (302)
.-.++|..+.+..+.+..+++++|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|+++...|.. +
T Consensus 296 ~~~~~~~~~~~~~~r~~il~~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~~~~~~~~~~d~~~~~ 375 (630)
T 3u1k_A 296 EIIESFNVVAKEVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITA 375 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEECGGGGSCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccceEEEECCCCCCCceEEEEECCeEEEEEEEcCCCCchhcccccccc
Confidence 345779999999999999999999999999999999999999999999999999999999999997655432 1
Q ss_pred --CCCcceEEEEEecCCCCCCCc-cCCCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHH
Q 022140 87 --SPDEGCVSIDFHMPPICSPLV-RPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALF 163 (302)
Q Consensus 87 --~p~~g~l~v~V~~~~~~~~~~-~~g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~ 163 (302)
.+++|++.++++++|+++..+ +.|+++.++..+++++++.|++ +++. ++.|+|+|+++||++|||.+
T Consensus 376 l~~~~~g~~~~~y~~~P~st~e~~~~g~~~rREi~~~~Li~raLr~--vi~~--------~~p~tI~V~~~VLesDGs~~ 445 (630)
T 3u1k_A 376 INGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYP--VIPR--------DFPFTIRVTSEVLESNGSSS 445 (630)
T ss_dssp HHCCCGGGEEEEEECCGGGGTCCCCCSSCCHHHHHHHHHHHHHHGG--GSCT--------TCSSEEEEEEEEEECSSCHH
T ss_pred cCCCCceEEEEEEEecCCcccccccCCCCChHHHHHHHHHHHHHHh--hCcc--------cCCeEEEEEEEEEEcCCCHH
Confidence 367899999999999998764 3466788899999999999985 4542 35689999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcEEecCCceeecCccccccccCcCccccccccccCCCccEEEEEEEEC------C-----EEE
Q 022140 164 DAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHK------N-----YIL 232 (302)
Q Consensus 164 da~~~A~~~AL~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~------~-----~~l 232 (302)
+|+++|+++||+|+++| |++++.++|+|+++ + .+|
T Consensus 446 ~AsI~aa~lAL~dAGIP----------------------------------l~~~Vaavs~gli~~~~~~~g~~~~~~iL 491 (630)
T 3u1k_A 446 MASACGGSLALMDSGVP----------------------------------ISSAVAGVAIGLVTKTDPEKGEIEDYRLL 491 (630)
T ss_dssp HHHHHHHHHHHHHTTCC----------------------------------CSSCCEEEEEEEEEEECSSSSCEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCC----------------------------------cccceEEEEEEEecCCCcccccccCceEE
Confidence 99999999999999998 57889999999987 3 799
Q ss_pred ECCChHHHhcCCceEEEEEcCCCcEEEEEccCCc-ccChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 233 ADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGA-VLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 233 ~DPt~~Ee~~~~~~l~i~~~~~g~i~~i~~~G~~-~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
+||+..|+..++..+.|+.+.+| |+.+++.|.. +++.++ |.+|+++|.+.+++|++.|++++++.
T Consensus 492 lD~~~~Ed~~~d~d~~Va~t~~g-It~lQ~~~k~~~~s~~~-l~~aL~~A~~g~~~I~~~m~~al~~~ 557 (630)
T 3u1k_A 492 TDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKI-VMEAIQQASVAKKEILQIMNKTISKP 557 (630)
T ss_dssp ESCCHHHHHTSSEEEEEEECSSC-EEEEEEEECSSCBCHHH-HHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred ecCCHHHHhhCcceEEEEecCCc-eEEEEecCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888 9999998864 789996 99999999999999999999999865
No 24
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=100.00 E-value=2.1e-38 Score=315.37 Aligned_cols=239 Identities=16% Similarity=0.165 Sum_probs=196.7
Q ss_pred HHHhhhChHHHHHHHHhcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeecc--CCC---CCCCcc
Q 022140 17 DAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMT--PSL---ESPDEG 91 (302)
Q Consensus 17 ~~~~~~~p~~f~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~~--p~~---~~p~~g 91 (302)
++|.++.+..+.+..+++++|+|||+++|+|++.+++|.+++++|||++++|+|+|+|+|+....+ +.+ ..+++|
T Consensus 301 ~~~~~~~k~~vr~~i~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~gp~e~~~~~d~l~~~~~g 380 (723)
T 3cdi_A 301 EILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 380 (723)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTSCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEECC-------------CTT
T ss_pred HHHHHHHHHHHHHHHhccCcCCCCCCccccccceEEeCCCCCCCeEEEEEECCcEEEEEEEecCcccccCCcccCCCCce
Confidence 455555444444444458999999999999999999999999999999999999999999754322 222 235789
Q ss_pred eEEEEEecCCCCCCCc-cCCCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHH
Q 022140 92 CVSIDFHMPPICSPLV-RPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSA 170 (302)
Q Consensus 92 ~l~v~V~~~~~~~~~~-~~g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~ 170 (302)
++.++++++|++++.+ +.|.+++++..++++++++|++ +++++. .+.|+|+|+++||++|||+++|+++|+
T Consensus 381 ~~~~~y~~~P~st~e~~r~g~p~~REi~~~~li~raL~~--vI~~~~------~~p~tI~Vd~~VLesdGs~~~Asi~aa 452 (723)
T 3cdi_A 381 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA--VMPDMD------KFPYTVRVVSEITESNGSSSMASVCGA 452 (723)
T ss_dssp SEEEEEECCGGGGTCCCCC-----CTTHHHHHHHHHHHT--TSCCSS------SSCSCEEEEEEEEECSSCHHHHHHHHH
T ss_pred EEEEEEecCCCCccccccCCCCCHHHHHHHHHHHHHHHH--hcCccc------CCCEEEEEEEEEEeCCCCHHHHHHHHH
Confidence 9999999999998765 3455677888899999999986 566543 356999999999999999999999999
Q ss_pred HHHHhhCCCCcEEecCCceeecCccccccccCcCccccccccccCCCccEEEEEEEEC-C---EEEECCChHHHhcCCce
Q 022140 171 VAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHK-N---YILADPTSEEESIMETL 246 (302)
Q Consensus 171 ~~AL~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~-~---~~l~DPt~~Ee~~~~~~ 246 (302)
++||+|+++| +.+++.++|+|+++ + .+|+||+.+||..+++.
T Consensus 453 ~lAL~dAgVP----------------------------------l~~~vaavs~gli~~g~~~~iL~Dp~~~Ed~~~d~d 498 (723)
T 3cdi_A 453 SLALMDAGVP----------------------------------IKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMD 498 (723)
T ss_dssp HHHHHHTTCC----------------------------------CSSCCEEEEEEEEEETTEEEEESSCCGGGGGGCSEE
T ss_pred HHHHhcCCCC----------------------------------cccceeeEEEEEEcCCCceEEEECCChHHhhhccce
Confidence 9999999999 46788999999996 3 59999999999999999
Q ss_pred EEEEEcCCCcEEEEEccCC-cccChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 247 VTVVLDSSNQLVSLYKPGG-AVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 247 l~i~~~~~g~i~~i~~~G~-~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
++|+.+.+| |+.+++.|+ .+++.++ |.+|+++|.+.+++|++.|+++|++.
T Consensus 499 ~~Va~t~~g-I~~lq~~gk~~~is~e~-l~~~l~~A~~~~~~I~~~m~~al~~~ 550 (723)
T 3cdi_A 499 FKVAGSRDG-ISALQMDIKIEGITKEI-MQVALNQAKGARLHILGVMEQAINAP 550 (723)
T ss_dssp EEEEECSSC-EEEEEEEECSSCCCHHH-HHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred eeecccCCc-eEEEEeCCccCCcCHHH-HHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999888 999999875 5789996 99999999999999999999999765
No 25
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=100.00 E-value=5.2e-38 Score=302.69 Aligned_cols=242 Identities=15% Similarity=0.135 Sum_probs=202.1
Q ss_pred ccHHHHhhhChHHHHHHHHhcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEE-eeecc---CC-CCCC
Q 022140 14 MEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK-MEVMT---PS-LESP 88 (302)
Q Consensus 14 ~~~~~~~~~~p~~f~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~-~~v~~---p~-~~~p 88 (302)
.-.++|..+.+..+.+..+++++|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|+ |+... |. ...+
T Consensus 292 ~~~~~~~~~~~~~~R~~il~~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~gp~~~~~~~~~l~~~ 371 (549)
T 3gme_A 292 ELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGE 371 (549)
T ss_dssp -----CCHHHHHHHHHHHHHTCCCTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEC-------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCccceEEEECCCCCCCceEEEEECCeEEEEEEEecCcccccCccccCCC
Confidence 3556788888999999999999999999999999999999999999999999999999999996 54321 11 1234
Q ss_pred CcceEEEEEecCCCCCCCc-cCCCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHH
Q 022140 89 DEGCVSIDFHMPPICSPLV-RPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAAL 167 (302)
Q Consensus 89 ~~g~l~v~V~~~~~~~~~~-~~g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~ 167 (302)
++|++.+++.++|+++... +.|+++.++..+++++++.|++ +|+++.+ +.|+|+|++.||++|||.++|++
T Consensus 372 ~~g~~~~~y~~~P~st~e~~~~g~~~~Reie~~~li~raL~~--vI~~~~~------~P~tI~V~~~VLesDGs~~~AsI 443 (549)
T 3gme_A 372 RTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA--VMPDMDK------FPYTVRVVSEITESNGSSSMASV 443 (549)
T ss_dssp --CCEEEEEECCGGGTTCCCCSSCCCSSHHHHHHHHHHHHTT--TCCCTTT------CCCEEEEEEEEEECSSCHHHHHH
T ss_pred CceEEEEEEEeCCCCcCCcccCCCCChhHHHHHHHHHHHHHH--hcCcccc------CCeEEEEEEEEEECCCCHHHHHH
Confidence 7899999999999998754 3466788999999999999986 6765433 45899999999999999999999
Q ss_pred HHHHHHHhhCCCCcEEecCCceeecCccccccccCcCccccccccccCCCccEEEEEEEECC----EEEECCChHHHhcC
Q 022140 168 LSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKN----YILADPTSEEESIM 243 (302)
Q Consensus 168 ~A~~~AL~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~----~~l~DPt~~Ee~~~ 243 (302)
+|+++||+|+++| |++++.++++|++++ .+++||+..|+..+
T Consensus 444 ~aa~lAL~DAGvP----------------------------------m~~~Vaavs~Gli~~g~~~~iL~D~~~~Ed~~~ 489 (549)
T 3gme_A 444 CGASLALMDAGVP----------------------------------IKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLG 489 (549)
T ss_dssp HHHHHHHHHHTCC----------------------------------CSSCCEEEEEEEEEETTEEEEEESCCHHHHHHS
T ss_pred HHHHHHHHhCCCC----------------------------------cccceeEEEEEEEcCCCceEEEecCChHHHccC
Confidence 9999999999998 578899999999976 78999999999999
Q ss_pred CceEEEEEcCCCcEEEEEccCC-cccChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 244 ETLVTVVLDSSNQLVSLYKPGG-AVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 244 ~~~l~i~~~~~g~i~~i~~~G~-~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
+..+.|+.+.+| ++.++..+. ..++.++ |.+|+++|.+.+++|++.++++|.+.
T Consensus 490 d~d~~Va~t~~g-italqmd~ki~G~s~~~-l~~~L~~A~~g~~~I~~~m~~al~~p 544 (549)
T 3gme_A 490 DMDFKVAGSRDG-ISALQMDIKIEGITKEI-MQVALNQAKGARLHILGVMEQAINAP 544 (549)
T ss_dssp SEEEEEEECSSC-EEEEEEEECCSCCCHHH-HHHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CceEEEEecCCC-eEEEEEccccCCcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999988876 777765432 1378896 99999999999999999999999763
No 26
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=100.00 E-value=1.1e-37 Score=311.20 Aligned_cols=241 Identities=17% Similarity=0.162 Sum_probs=208.4
Q ss_pred cHHHHhhhChHHHHHHHHhcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEE-eeeccCC-C---CCCC
Q 022140 15 EVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK-MEVMTPS-L---ESPD 89 (302)
Q Consensus 15 ~~~~~~~~~p~~f~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~-~~v~~p~-~---~~p~ 89 (302)
-.++|.++.+..+.+..+++++|+|||+++|+|++.+++|.+++++|||++++|+|+|+|+|+ |+...+. . ..++
T Consensus 334 ~~~~~~~~~k~~~r~~i~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~Gp~~~~~~~d~l~~~~ 413 (757)
T 1e3p_A 334 ISAAYRALTKSLVRERVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVT 413 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCBCTTSCBTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEEEGGGSEECCSSSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccceeEEeCCCCCCCEEEEEEECCcEEEEEEEecCCCccccccccCCCC
Confidence 346788888877777777899999999999999999999999999999999999999999997 5543221 1 2567
Q ss_pred cceEEEEEecCCCCCCCcc-CCCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHH
Q 022140 90 EGCVSIDFHMPPICSPLVR-PGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALL 168 (302)
Q Consensus 90 ~g~l~v~V~~~~~~~~~~~-~g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~ 168 (302)
+|++.++++++|+++..++ .|.++.++..+++++++.|++. ++. .+++.|+|+|+++||++|||.++|+++
T Consensus 414 ~g~~~~~y~f~P~st~e~~~~g~~~~reie~~~li~raL~~v--I~~------~~~~P~tI~V~~~VLesDGs~~~Asi~ 485 (757)
T 1e3p_A 414 RKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAERAIVPV--LPT------REEFPYAIRQVSEALGSNGSTSMGSVC 485 (757)
T ss_dssp EESEEEEEECCGGGGTCCCCCSSCCHHHHHHHHHHHHHHGGG--CCC------TTTSCEEEEEEEEEEECSSCHHHHHHH
T ss_pred ceEEEEEEEeCCcccccccCCCCCchhHHHHHHHHHHHHHHh--ccc------cccCCEEEEEEEEEEECCCCHHHHHHH
Confidence 8999999999999987653 4567889999999999999863 331 235679999999999999999999999
Q ss_pred HHHHHHhhCCCCcEEecCCceeecCccccccccCcCccccccccccCCCccEEEEEEEE----CC----EEEECCChHHH
Q 022140 169 SAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILH----KN----YILADPTSEEE 240 (302)
Q Consensus 169 A~~~AL~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~----~~----~~l~DPt~~Ee 240 (302)
|+++||+|+++| +++++.++|+|++ ++ .+|+||+..|+
T Consensus 486 aa~lAL~dAgIP----------------------------------~k~~Vaavs~gli~eg~dg~~~~~iLlDp~~~Ed 531 (757)
T 1e3p_A 486 ASTMSLLNAGVP----------------------------------LKAPVAGIAMGLISQEINGETHYVALTDILGAED 531 (757)
T ss_dssp HHHHHHHHHTCC----------------------------------CSSCCEEEEEEEEEEESSSCEEEEEEESCCHHHH
T ss_pred HHHHHHHHcCCC----------------------------------cccceEEEEEEEEecCCCCccceeEEeCCCHHHH
Confidence 999999999998 5677899999999 44 79999999999
Q ss_pred hcCCceEEEEEcCCCcEEEEEccCC-cccChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 241 SIMETLVTVVLDSSNQLVSLYKPGG-AVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 241 ~~~~~~l~i~~~~~g~i~~i~~~G~-~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
..+++.++|+.+. ++|+.+++.|. ..++.++ |.+|+++|.+.+++|++.|+++|.+.
T Consensus 532 ~~gd~d~~Va~t~-~~It~lQ~~gk~~gi~~e~-l~~aL~~A~~~~~~I~~~m~~al~~~ 589 (757)
T 1e3p_A 532 AFGDMDFKVAGTK-EFVTALQLDTKLDGIPASV-LAAALKQARDARLHILDVMMEAIDTP 589 (757)
T ss_dssp HHCSEEEEEEECS-SSEEEEEEEECSSCCCHHH-HHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred hccCceEEEEecC-CeEEEEEEcCCccccCHHH-HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999655 67999998886 4689995 99999999999999999999999764
No 27
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=100.00 E-value=3.2e-37 Score=305.47 Aligned_cols=244 Identities=16% Similarity=0.137 Sum_probs=211.8
Q ss_pred ccccHHHHhhhChHHHHHHHHhcCCCCCCCCCCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEE-eeeccCC----CC
Q 022140 12 SEMEVDAFRRLFPLRYFERHLAESIRPDARSLSRARNTTISMGAVASADGSALAKIGSTTMLAAIK-MEVMTPS----LE 86 (302)
Q Consensus 12 ~~~~~~~~~~~~p~~f~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~-~~v~~p~----~~ 86 (302)
...-..+|..+.+..+.+..+++++|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|+ |+...+. ..
T Consensus 306 ~~~~~~~~~~~~~~~~r~~il~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TkVl~~Vt~Gp~~~~~~~d~l~ 385 (726)
T 4aid_A 306 PLKLGAIFKELEADVVRRGILDTGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALE 385 (726)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHSSSBCTTSCBTTCCCCEEEEECSSTTSSEEEEEEETTEEEEEEEEEECGGGSEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCccceEEEECCCCCCCceEEEEeCCeEEEEEEEeCCCCccccccccc
Confidence 345678899999999999999999999999999999999999999999999999999999999996 5443221 12
Q ss_pred CCCcceEEEEEecCCCCCCCcc-CCCCCCcHHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHH
Q 022140 87 SPDEGCVSIDFHMPPICSPLVR-PGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDA 165 (302)
Q Consensus 87 ~p~~g~l~v~V~~~~~~~~~~~-~g~~~~~~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da 165 (302)
.+++|++.+++.++|+++...+ .|+++.++..+++++++.|++ +++. .+.+.|+|+|++.||++|||.++|
T Consensus 386 ~~~~g~~~~~y~~~P~st~er~~~g~~~~Reie~~~li~raL~~--vI~~------~~~~P~tI~V~~~VLesDGs~~~A 457 (726)
T 4aid_A 386 GTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRP--MLPT------KEDFPYTIRLVSEITESNGSSSMA 457 (726)
T ss_dssp EEEEECEEEEEECCGGGGTCCCCCSSCCHHHHHHHHHHHHHHGG--GSCC------TTTCCCEEEEEEEEEECSSCHHHH
T ss_pred CCCceEEEEEEEeCCCcccccccCCCcchhhHHHHHHHHHHHHH--hcCc------cccCCeEEEEEEEEEEcCCcHHHH
Confidence 3568999999999999876543 456778899999999999986 4442 234668999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcEEecCCceeecCccccccccCcCccccccccccCCCccEEEEEEEECC----EEEECCChHHHh
Q 022140 166 ALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKN----YILADPTSEEES 241 (302)
Q Consensus 166 ~~~A~~~AL~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~----~~l~DPt~~Ee~ 241 (302)
+++|+++||+|+++| |++++.++++|++++ .+++||+..|+.
T Consensus 458 sI~aa~lAL~DAGIP----------------------------------m~~~VaavsvGli~~g~~~~iLlD~~~~Ed~ 503 (726)
T 4aid_A 458 TVCGSSLAMMDAGVP----------------------------------LVRPVSGIAMGLILEQDGFAVLSDILGDEDH 503 (726)
T ss_dssp HHHHHHHHHHHTTCC----------------------------------CSSCCEEEEEEEEECSSCEEEEESCCTTGGG
T ss_pred HHHHHHHHHHhcCCc----------------------------------cccCeeEEEEEEEcCCCceEEEecCChhHHh
Confidence 999999999999998 578899999999864 578999999999
Q ss_pred cCCceEEEEEcCCCcEEEEEccCC-cccChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 242 IMETLVTVVLDSSNQLVSLYKPGG-AVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 242 ~~~~~l~i~~~~~g~i~~i~~~G~-~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
.++..+.|+.+.+| ++.++..|. ..|+.++ |.+|+++|.+.+++|++.|+++|.+.
T Consensus 504 ~gd~d~~Va~t~~g-It~lQ~d~k~~~~s~e~-l~~aL~~A~~g~~~I~~~m~~al~~~ 560 (726)
T 4aid_A 504 LGDMDFKVAGTSEG-LTSLQMDIKIAGITPAI-MEQALAQAKEGRAHILGEMNKAMDAP 560 (726)
T ss_dssp GSSEEEEEEEETTE-EEEEEEEECSSCCCHHH-HHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred cCCceEEEEecCCc-eEEEEecCCcCCcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999987765 999998884 3789996 99999999999999999999999864
No 28
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans}
Probab=100.00 E-value=3.5e-37 Score=268.78 Aligned_cols=201 Identities=17% Similarity=0.239 Sum_probs=158.1
Q ss_pred CCCCcceEEEeCCccCCCeeEEEEeCCeEEEEEEEeeeccC-CCCCCCcceEEEEEecCCCCCCCccCCCCCCcHHHHHH
Q 022140 43 LSRARNTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTP-SLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAK 121 (302)
Q Consensus 43 ~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~v~~p-~~~~p~~g~l~v~V~~~~~~~~~~~~g~~~~~~~~ls~ 121 (302)
.+|+|++.+++|.+++++|||+|++|+|+|+|+|+++...+ ..+.|+++ .++|+|+|+. |++++. ++++
T Consensus 2 ~~e~R~i~ie~g~l~~A~GSa~v~~G~T~Vl~~V~~~~e~~~~~~~~~~~--~l~v~~~p~~------G~~~~~--e~~~ 71 (222)
T 3krn_A 2 AGRLREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAM--TLDISYRANC------GDNKFN--VLNN 71 (222)
T ss_dssp -CCCCCBCCBSCCC----CCCBCCBTTCEEECCCCSSCC---------------CCCSSCCC------C--CCS--SCTT
T ss_pred CCcccceEEEECCCCCCCeEEEEEECCcEEEEEEECCCCCcccccCCceE--EEEEEEcCCC------CCCCHH--HHHH
Confidence 47899999999999999999999999999999999986432 23344444 4577888863 444444 7899
Q ss_pred HHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCHHHHHHHHHHHHHhhCCCCcEEecCCceeecCcccccccc
Q 022140 122 QLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQKEENS 201 (302)
Q Consensus 122 ~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l~da~~~A~~~AL~~~~iP~~~~~~~~~~~~~~~~~~~~~ 201 (302)
+|++.|++ .++++. +| .|.|+|+++||++||++++|+++|+++||+++++|
T Consensus 72 li~r~l~~--~i~~~~---~p---~~~I~I~~~VL~~DG~~~~aai~aa~~AL~dagiP--------------------- 122 (222)
T 3krn_A 72 IIHSTLSN--AINLEL---FP---HTTISVTVHGIQDDGSMGAVAINGACFALLDNGMP--------------------- 122 (222)
T ss_dssp HHHHC--C--CSCC-----------CCCCCCCEEEECCSCHHHHHHHGGGTTTTTTTCC---------------------
T ss_pred HHHHHHHH--hccHHh---CC---CcEEEEEEEEEECCCChHHHHHHHHHHHHHHCCCC---------------------
Confidence 99999987 455532 45 48999999999999999999999999999999998
Q ss_pred CcCccccccccccCCCccEEEEEEEECCEEEECCChHHHhcCCceEEEEE---cC-CCcEEEEEccCCcccChHHHHHHH
Q 022140 202 EKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVL---DS-SNQLVSLYKPGGAVLAYTSAVQDC 277 (302)
Q Consensus 202 ~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l~DPt~~Ee~~~~~~l~i~~---~~-~g~i~~i~~~G~~~~~~~~~l~~~ 277 (302)
+++++.++|+|++++.+++|||.+|++.+++.++|++ +. .++|+.+++.| .++.++ +.+|
T Consensus 123 -------------~~~~v~avsvg~~~g~~llDpt~~Ee~~~~~~l~va~~~~~~~~~~i~~vq~~g--~~~~~~-l~~~ 186 (222)
T 3krn_A 123 -------------FETVFCGVLIVRVKDELIIDPTAKQEAASTGRVLFSVCKGSDGHPEVCAMDAIG--HWDFIQ-LEAA 186 (222)
T ss_dssp -------------TTSCCCCCCCEECSSSEESSCCTTTTTSCC-CCCCEECCCSSSSCCEEEECCBS--SCTTHH-HHTH
T ss_pred -------------ccCcEEEEEEEEECCEEEeCCCHHHHhccCccEEEEEEccCCCCCCEEEEEEeC--CcCHHH-HHHH
Confidence 5788999999999999999999999999999999999 75 68999999877 588886 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 022140 278 IALTRQRVKELHQILEEAISG 298 (302)
Q Consensus 278 i~~A~~~~~~l~~~l~~~l~~ 298 (302)
+++|.+.+++|++++++++++
T Consensus 187 l~~a~~~~~~i~~~~~~~l~~ 207 (222)
T 3krn_A 187 WSLAQPSASAIFDFYKTVMKR 207 (222)
T ss_dssp HHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999875
No 29
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.97 E-value=3.2e-29 Score=246.16 Aligned_cols=205 Identities=17% Similarity=0.147 Sum_probs=172.2
Q ss_pred CcceEEEeCCccC-CCeeEEEEeCCeEEEEEEEeeeccCCCCCCCcceEEEEEecCCCCCC----Cc--cCCCCCCcHHH
Q 022140 46 ARNTTISMGAVAS-ADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSP----LV--RPGRPAEAAPV 118 (302)
Q Consensus 46 ~R~i~i~~g~l~~-a~GSa~v~~G~T~Vi~~V~~~v~~p~~~~p~~g~l~v~V~~~~~~~~----~~--~~g~~~~~~~~ 118 (302)
-|++.+++|.+++ |+|||+|++|+|+|+|+|+++...+ +. +...+.|+++..+++.. .| |.|++++.+.+
T Consensus 14 ~R~i~ietG~~a~qA~GSa~v~~G~T~VL~tv~~~~~~~-~~--df~pL~v~y~~~~~a~g~iPg~f~kRegrps~~e~l 90 (630)
T 3u1k_A 14 NRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPS-PS--QFMPLVVDYRQKAAAAGRIPTNYLRREVGTSDKEIL 90 (630)
T ss_dssp SSEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCC-SS--SSCCEEEEEECSEETTTTEECTTC-----CCHHHHH
T ss_pred CEEEEEEeCCccccCCeeEEEEECCeEEEEEEEecCCCC-CC--CeeEEEEEEEecccccCCCCccccccCCCCCHHHHH
Confidence 4799999999996 9999999999999999999986533 21 33446777776666652 12 35778899999
Q ss_pred HHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCH--HHHHHHHHHHHHhhCCCCcEEecCCceeecCccc
Q 022140 119 VAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGAL--FDAALLSAVAAFSNLQIPTVSLDDGKIVMLPEEQ 196 (302)
Q Consensus 119 ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l--~da~~~A~~~AL~~~~iP~~~~~~~~~~~~~~~~ 196 (302)
++++|.+.|++. + +..++|.++|+++||++||+. ..|+++|+++||.++++|
T Consensus 91 isRlIdR~lRp~--~--------~~~~~~~~qI~~~VLs~Dg~~~~~~aai~aAs~AL~~s~iP---------------- 144 (630)
T 3u1k_A 91 TSRIIDRSIRPL--F--------PAGYFYDTQVLCNLLAVDGVNEPDVLAINGASVALSLSDIP---------------- 144 (630)
T ss_dssp HHHHHHHHHGGG--S--------CTTCCCCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHSSSC----------------
T ss_pred HHHHHhHHhhhc--c--------cccCCCceEEEEEEEECCCCCCHHHHHHHHHHHHHhccCCC----------------
Confidence 999999999973 3 334578899999999999997 668999999999999998
Q ss_pred cccccCcCccccccccccCCCccEEEEEEEECCEEEECCChHHHhcCCceEEEEEcCCCcEEEEEccCCcccChHHHHHH
Q 022140 197 KEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQD 276 (302)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l~DPt~~Ee~~~~~~l~i~~~~~g~i~~i~~~G~~~~~~~~~l~~ 276 (302)
+++++.++++|++++.+++|||.+|++.++..++|+++.+|+|++++..| ..++.++ |.+
T Consensus 145 ------------------~~~~vaav~vg~i~g~~vldPt~~E~~~s~~dl~Va~t~~~~i~mve~~~-~~~se~~-~~~ 204 (630)
T 3u1k_A 145 ------------------WNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVMLEASA-ENILQQD-FCH 204 (630)
T ss_dssp ------------------CCCCCEEEEEEEETTEEEESCCHHHHHTEEEEEEEEEETTTEEEEEEEEE-EEECHHH-HHH
T ss_pred ------------------cCCCeEEEEEEEECCEEEECCCHHHHhhCCceEEEEEccCCcEEEEECCC-ccCCHHH-HHH
Confidence 56788899999999999999999999999999999999888999998754 4588886 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 022140 277 CIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 277 ~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
|+++|++.++++++++++++++.
T Consensus 205 al~~a~~~~~~l~~~~~~~~~~~ 227 (630)
T 3u1k_A 205 AIKVGVKYTQQIIQGIQQLVKET 227 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 30
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.96 E-value=6.1e-28 Score=240.25 Aligned_cols=202 Identities=15% Similarity=0.206 Sum_probs=171.5
Q ss_pred cceEEEeCCcc-CCCeeEEEEeCCeEEEEEEEeeeccCCCCCCCcceEEEEEecCCCCCC--C----c--cCCCCCCcHH
Q 022140 47 RNTTISMGAVA-SADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSP--L----V--RPGRPAEAAP 117 (302)
Q Consensus 47 R~i~i~~g~l~-~a~GSa~v~~G~T~Vi~~V~~~v~~p~~~~p~~g~l~v~V~~~~~~~~--~----~--~~g~~~~~~~ 117 (302)
|++.+++|.+. +|+||++|++|+|+|+|+|+++. +|. |..+++.++|+|.+.... . | |.|+|++.+.
T Consensus 20 r~i~ietg~ia~qA~GSv~v~~G~T~Vl~tv~~~~-~~~---~~~~f~pltv~y~ek~~a~g~ipg~f~kReGrpse~e~ 95 (723)
T 3cdi_A 20 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQK-KAK---PGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGET 95 (723)
T ss_dssp EEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECS-SCC---SSCCSCCEEEEEEECGGGGTCCCC-------CCCHHHH
T ss_pred EEEEEEeCccccCCCeeEEEEECCEEEEEEEEecC-CCC---CCCCeeeEEEEEeEeccccccCCCccccCCCCCChHHh
Confidence 49999999985 79999999999999999999973 343 345788899999876322 1 2 5799999999
Q ss_pred HHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCH-HH-HHHHHHHHHHhhCCCCcEEecCCceeecCcc
Q 022140 118 VVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGAL-FD-AALLSAVAAFSNLQIPTVSLDDGKIVMLPEE 195 (302)
Q Consensus 118 ~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l-~d-a~~~A~~~AL~~~~iP~~~~~~~~~~~~~~~ 195 (302)
.+++++.|.||+ ++|..++|.++|+++||++||+. .| +|++|+++||..+++|
T Consensus 96 l~sRlIdR~lRp----------lfp~~~~~~vqv~~~vls~Dg~~~~d~~ai~aAsaAL~~s~iP--------------- 150 (723)
T 3cdi_A 96 LIARLIDRPIRP----------LFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIP--------------- 150 (723)
T ss_dssp HHHHHHHHHHGG----------GSCTTCCSCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTSS---------------
T ss_pred HHHHHhCccchh----------cccccCcceEEEEEEEEEcCCCCCHHHHHHHHHHHHHHhcCCC---------------
Confidence 999999999997 37778889999999999999995 56 9999999999999998
Q ss_pred ccccccCcCccccccccccCCCccEEEEEEEECCEEEECCChHHHhcCCceEEEEEcCCCcEEEEEccCCcccChHHHHH
Q 022140 196 QKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAVQ 275 (302)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l~DPt~~Ee~~~~~~l~i~~~~~g~i~~i~~~G~~~~~~~~~l~ 275 (302)
++..+.+|++|++++.+++|||.+|++.++..++|+.+.++ ++.++ .|+..++.++ |.
T Consensus 151 -------------------~~~pv~av~vg~i~g~~v~nPt~~e~~~s~~~lvvagt~~~-i~mve-~~~~~~se~~-~~ 208 (723)
T 3cdi_A 151 -------------------FNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA-VLMVE-SEAQLLSEDQ-ML 208 (723)
T ss_dssp -------------------CCCCCCCEEEEEETTEEEESCCTTGGGGCSEEEEEEECSSC-EEEEE-EEEEEECHHH-HH
T ss_pred -------------------CCCCeEEEEEEEECCEEEECcCHHHHHhCCceEEEEccCCE-EEEEe-CCCCCCCHHH-HH
Confidence 45667899999999999999999999999999999976654 66655 5666799997 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 276 DCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 276 ~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
+|+++|++.++++.+++++++++.
T Consensus 209 ~al~~a~~~~~~l~~~~~~~~~~~ 232 (723)
T 3cdi_A 209 GAVVFGHEQQQVVIQNINELVKEA 232 (723)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 31
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.94 E-value=1.3e-25 Score=222.52 Aligned_cols=202 Identities=18% Similarity=0.174 Sum_probs=169.2
Q ss_pred CcceEEEeCCcc-CCCeeEEEEeCCeEEEEEEEeeeccCCCCCCCcceEEEEEecC---------CCCCCCccCCCCCCc
Q 022140 46 ARNTTISMGAVA-SADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMP---------PICSPLVRPGRPAEA 115 (302)
Q Consensus 46 ~R~i~i~~g~l~-~a~GSa~v~~G~T~Vi~~V~~~v~~p~~~~p~~g~l~v~V~~~---------~~~~~~~~~g~~~~~ 115 (302)
-|++.+++|.+. +|+||+++++|+|+|+|+|+++...| +..+++.+.|+|. |.... .|.|+++++
T Consensus 27 ~R~i~ietg~~ak~A~GSvlv~~GdT~VL~tv~~~~~~~----~g~df~pltveY~ek~~a~G~iPg~~~-~REGrps~~ 101 (726)
T 4aid_A 27 GKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQK----PGQDFFPLTVNYQEKTFAAGKIPGGFF-KREGRPSEK 101 (726)
T ss_dssp TEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCC----TTCCSCCEEEEEEECGGGGTCCCCSTT-CSCCSCCHH
T ss_pred CeeEEEEECCccCCCCeeEEEEECCeEEEEEEEecCCCC----CCCCCcCceeeeeeehhhcccCCCccc-CCCCCCCch
Confidence 479999999887 59999999999999999999975322 2345666677664 22211 235899999
Q ss_pred HHHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCC-HHH-HHHHHHHHHHhhCCCCcEEecCCceeecC
Q 022140 116 APVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGA-LFD-AALLSAVAAFSNLQIPTVSLDDGKIVMLP 193 (302)
Q Consensus 116 ~~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~-l~d-a~~~A~~~AL~~~~iP~~~~~~~~~~~~~ 193 (302)
+.+++++|.|.||+. +|..+.|.++|+++||++||+ ..| ++++|+++||..+++|
T Consensus 102 ~~li~RlIdR~lRpl----------f~~~~~~evqI~~~Vls~Dg~~~~d~~ai~gAs~AL~~s~iP------------- 158 (726)
T 4aid_A 102 ETLVSRLIDRPIRPL----------FVKGFKNEVQVVVTVLQHDLENDPDILGMVAASAALCLSGAP------------- 158 (726)
T ss_dssp HHHHHHHHHHHHGGG----------BCTTCCSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCS-------------
T ss_pred hhhHHHHhCCccccc----------cccCCccceEEEEEEEecCCCCChhHHHHHHHHHHHHhcCCC-------------
Confidence 999999999999972 455556889999999999986 445 5889999999999988
Q ss_pred ccccccccCcCccccccccccCCCccEEEEEEEECCEEEECCChHHHhcCCceEEEEEcCCCcEEEEEccCCcccChHHH
Q 022140 194 EEQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSA 273 (302)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l~DPt~~Ee~~~~~~l~i~~~~~g~i~~i~~~G~~~~~~~~~ 273 (302)
+++.+.+|++|++++.+++|||.+|++.++..++|+.+.++ ++.++. ++..++.++
T Consensus 159 ---------------------~~~~vaaV~Vg~i~g~~vldPt~~E~~~s~~dl~va~t~~~-i~mve~-~~~~~se~~- 214 (726)
T 4aid_A 159 ---------------------FMGPIGAARVGWVDGAYVLNPTLDEMKESKMDLVVAGTADA-VMMVES-EIQELSEEI- 214 (726)
T ss_dssp ---------------------BCCCCEEEEEEEETTEEEESCCHHHHHTCSEEEEEEECSSC-EEEEEE-EESSBCHHH-
T ss_pred ---------------------cCCCeEEEEEEEECCEEEECCCHHHHhhCceeEEEEEeCCe-EEEEEc-cCCCCCHHH-
Confidence 46778899999999999999999999999999999998887 888874 445799997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 274 VQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 274 l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
|.+++++|.+.+++|++++++++++.
T Consensus 215 ~~~al~~a~~~i~~l~~~q~~~~~~~ 240 (726)
T 4aid_A 215 VLGGVNFAHQQMQAVIDAIIDLAEHA 240 (726)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988764
No 32
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.94 E-value=8.5e-26 Score=217.77 Aligned_cols=203 Identities=15% Similarity=0.197 Sum_probs=167.0
Q ss_pred CcceEEEeCCcc-CCCeeEEEEeCCeEEEEEEEeeeccCCCCCCCcceEEEEEecCCCCC-------CC-ccCCCCCCcH
Q 022140 46 ARNTTISMGAVA-SADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICS-------PL-VRPGRPAEAA 116 (302)
Q Consensus 46 ~R~i~i~~g~l~-~a~GSa~v~~G~T~Vi~~V~~~v~~p~~~~p~~g~l~v~V~~~~~~~-------~~-~~~g~~~~~~ 116 (302)
-|++.+++|.+. +|+||+++++|+|+|+|+++++-..| +..+++.+.|+|..... .. .|.|++++.+
T Consensus 13 ~R~i~ietg~~ak~A~GSvlv~~GdT~Vl~tv~~~~~~~----~g~df~Pltv~Y~e~~~a~G~iPg~~~~REGrps~~~ 88 (549)
T 3gme_A 13 QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK----PGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGE 88 (549)
T ss_dssp TEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCC----TTCCSCCEEEEEEECGGGTTCCCSCC-----CCCHHH
T ss_pred CEEEEEEECCccCCCCeEEEEEECCEEEEEEEEecCCCC----CCCCCccceeeeeeehhhcccCCCcCcCcCCCCChhh
Confidence 479999999887 59999999999999999999964322 23567777777743211 11 1358899999
Q ss_pred HHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCC-HHH-HHHHHHHHHHhhCCCCcEEecCCceeecCc
Q 022140 117 PVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGA-LFD-AALLSAVAAFSNLQIPTVSLDDGKIVMLPE 194 (302)
Q Consensus 117 ~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~-l~d-a~~~A~~~AL~~~~iP~~~~~~~~~~~~~~ 194 (302)
.+++++|.+.||+ ++|..+.+.++|+++||++||+ ..| ++++|+++||..+++|
T Consensus 89 ~l~~RlIdR~lRp----------lfp~~~~~evqI~~~Vls~D~~~~pd~~ai~gAs~AL~~s~iP-------------- 144 (549)
T 3gme_A 89 TLIARLIDRPIRP----------LFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIP-------------- 144 (549)
T ss_dssp HHHHHHHHHHHGG----------GSCTTCCSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHCSC--------------
T ss_pred hHHHHHhCCcccc----------ccccCCcccEEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCC--------------
Confidence 9999999999997 2555566789999999999985 445 6689999999999988
Q ss_pred cccccccCcCccccccccccCCCccEEEEEEEECCEEEECCChHHHhcCCceEEEEEcCCCcEEEEEccCCcccChHHHH
Q 022140 195 EQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLYKPGGAVLAYTSAV 274 (302)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l~DPt~~Ee~~~~~~l~i~~~~~g~i~~i~~~G~~~~~~~~~l 274 (302)
+++...+|++|++++.+++|||.+|++.++..++|+.+.++ ++.++. ++..++.++ +
T Consensus 145 --------------------~~gpvaaV~Vg~i~g~~vlnPt~~e~~~s~~dl~va~t~~~-i~mve~-e~~~~se~~-~ 201 (549)
T 3gme_A 145 --------------------FNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA-VLMVES-EAELLSEDQ-M 201 (549)
T ss_dssp --------------------CCCCCEEEEEEEETTEEEESCCTTTTTTCSBCEEEEECSSC-EEEEEE-EEEEECHHH-H
T ss_pred --------------------cCCCeeEEEEEEECCEEEECCCHHHHhhCceEEEEEecCCe-EEEEEc-cCCCCCHHH-H
Confidence 46778899999999999999999999999999999988876 888874 445799997 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 275 QDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 275 ~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
.+++++|++.+++|++++++++++.
T Consensus 202 ~~al~~a~~~i~~l~~~q~~~~~~~ 226 (549)
T 3gme_A 202 LGAVVFGHEQQQVVIQNINELVKEA 226 (549)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988764
No 33
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.92 E-value=1.8e-23 Score=208.90 Aligned_cols=204 Identities=16% Similarity=0.118 Sum_probs=168.3
Q ss_pred cceEEEeCCcc-CCCeeEEEEe-CCeEEEEEEEeeeccCCCCCCCcceEEEEEecCCCC-------CC-CccCCCCCCcH
Q 022140 47 RNTTISMGAVA-SADGSALAKI-GSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPIC-------SP-LVRPGRPAEAA 116 (302)
Q Consensus 47 R~i~i~~g~l~-~a~GSa~v~~-G~T~Vi~~V~~~v~~p~~~~p~~g~l~v~V~~~~~~-------~~-~~~~g~~~~~~ 116 (302)
|++.+++|.+. +|+||+++++ |+|+|+|+++++-.. + |...++.+.|+|.... .. ..|.|++++.+
T Consensus 37 r~i~~etg~la~qA~GSv~v~~~G~T~Vl~tv~~~~~~-~---~~~df~pLtv~y~ek~~a~g~iPg~f~~REGrps~~e 112 (757)
T 1e3p_A 37 RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNP-K---DQLDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDA 112 (757)
T ss_dssp EEEEEEESSSCTTSSEEEEEEETTTEEEEEEEEEEEEE-C---TTCSSCCEEEEEEECGGGGTCCCCSTTSSCCSCCHHH
T ss_pred EeEEEEECccccCCCeEEEEEECCCeEEEEEEEecCCC-C---CCCCCccEEEEEEecccccccCCCcccccCcCCChHH
Confidence 69999999985 7999999999 999999999997542 1 2234555677764221 01 12468899999
Q ss_pred HHHHHHHHHHhhcCCCcccccceeecCeeeEEEEEEEEEecCCCCH--HHHHHHHHHHHHhhCCCCcEEecCCceeecCc
Q 022140 117 PVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYLDIYCLDADGAL--FDAALLSAVAAFSNLQIPTVSLDDGKIVMLPE 194 (302)
Q Consensus 117 ~~ls~~l~~~l~~~~~i~~~~L~i~~g~~~w~i~v~v~Vl~~dG~l--~da~~~A~~~AL~~~~iP~~~~~~~~~~~~~~ 194 (302)
..++++|.|.||+ ++|..+.-.++|+++||++||.- .-++++|+++||.++++|
T Consensus 113 ~l~~RlIdR~LRp----------lfp~~~~~evqv~~~Vls~D~~~~~~~~ai~gAs~AL~~s~iP-------------- 168 (757)
T 1e3p_A 113 ILTCRLIDRPLRP----------SFKKGLRNEIQVVATIMALNPDHLYDVVAINAASASTQLAGLP-------------- 168 (757)
T ss_dssp HHHHHHHHHHHGG----------GBCTTBCEEEEEEEEEEECCTTSCCHHHHHHHHHHHHHHTTSS--------------
T ss_pred HHHHHHHCCcchh----------ccccCCCCceEEEEEEEEECCCCCHHHHHHHHHHHHHhccCCC--------------
Confidence 9999999999997 25555556799999999999864 788999999999999998
Q ss_pred cccccccCcCccccccccccCCCccEEEEEEEECCEEEECCChHHHhcCCceEEEEEcC----CCcEEEEEc--------
Q 022140 195 EQKEENSEKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDS----SNQLVSLYK-------- 262 (302)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~i~~~p~~vt~~~~~~~~l~DPt~~Ee~~~~~~l~i~~~~----~g~i~~i~~-------- 262 (302)
+++...++++|++++.+++|||.+|++.++..++|+.+. .+.+..++.
T Consensus 169 --------------------~~~~vaav~vg~~~g~~vlnPt~~e~~~s~~dl~va~t~~~~~~~~i~mvE~q~t~~~~~ 228 (757)
T 1e3p_A 169 --------------------FSGPIGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDVAIMMVEAEATEKTIQ 228 (757)
T ss_dssp --------------------BCCCCEEEEEEEETTEEEESCCHHHHTTEEEEEEEEEEECTTSCEEEEEEEEEECSSHHH
T ss_pred --------------------CCCceEEEEEEEECCEEEECCCHHHHhcCceeEEEEeccccCCCCcEEEEEEeccccccc
Confidence 467778999999999999999999999999999999884 456777776
Q ss_pred ---cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022140 263 ---PGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGM 299 (302)
Q Consensus 263 ---~G~~~~~~~~~l~~~i~~A~~~~~~l~~~l~~~l~~~ 299 (302)
.++..++.++ |.+++++|++.+++|.+++++++++.
T Consensus 229 ~~~~~~~~~se~~-l~~al~~a~~~i~~l~~~q~~~~~~~ 267 (757)
T 1e3p_A 229 LVKDGAEAPTEEV-VAAGLDAAKPFIKVLCKAQADLAAKA 267 (757)
T ss_dssp HHHTTCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2456899996 99999999999999999999988753
No 34
>1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase, alpha-helical domain, structural genomics; NMR {Mus musculus} SCOP: a.4.9.1
Probab=94.44 E-value=0.025 Score=42.35 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=26.1
Q ss_pred HHHHhhhChHHHHHHHHhcCCCCCCCCCCCCc
Q 022140 16 VDAFRRLFPLRYFERHLAESIRPDARSLSRAR 47 (302)
Q Consensus 16 ~~~~~~~~p~~f~~~~l~~~~R~DGR~~~e~R 47 (302)
..+|..+.-...-...|+.++|+|||.+++.|
T Consensus 72 ~~~~~~lek~~vR~~IL~e~~RiDGR~~deIr 103 (104)
T 1whu_A 72 IESFNIVAKEVFRSIILNEYKRCDGRDSGPSS 103 (104)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCCCCCSSCSC
T ss_pred HHHHHHHHHHHHHHHHHCCCcCCCCCCccccc
Confidence 35677777767777778899999999999988
No 35
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=21.88 E-value=2.7e+02 Score=21.18 Aligned_cols=16 Identities=0% Similarity=0.152 Sum_probs=13.1
Q ss_pred EEEEEcCCCcEEEEEc
Q 022140 247 VTVVLDSSNQLVSLYK 262 (302)
Q Consensus 247 l~i~~~~~g~i~~i~~ 262 (302)
-+++++++|+|.+.+.
T Consensus 123 ~tflID~~G~I~~~~~ 138 (164)
T 4gqc_A 123 AVFIVKPDGTVAYKWV 138 (164)
T ss_dssp EEEEECTTSBEEEEEE
T ss_pred EEEEECCCCEEEEEEE
Confidence 3688999999988764
No 36
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=21.69 E-value=1.5e+02 Score=18.38 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 022140 274 VQDCIALTRQRVKELHQILEEAISG 298 (302)
Q Consensus 274 l~~~i~~A~~~~~~l~~~l~~~l~~ 298 (302)
++++++.|.+.+.+++++-.+-+++
T Consensus 37 lmklceeaakkaeelfklaeerlkk 61 (62)
T 2i7u_A 37 LMKLCEEAAKKAEELFKLAEERLKK 61 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8889999999999999998877654
No 37
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=20.19 E-value=2.8e+02 Score=21.37 Aligned_cols=42 Identities=17% Similarity=0.036 Sum_probs=27.2
Q ss_pred cCCceEEEEEcCCCcEEEEEccCCc--ccChHHHHHHHHHHHHHH
Q 022140 242 IMETLVTVVLDSSNQLVSLYKPGGA--VLAYTSAVQDCIALTRQR 284 (302)
Q Consensus 242 ~~~~~l~i~~~~~g~i~~i~~~G~~--~~~~~~~l~~~i~~A~~~ 284 (302)
...+.++|.++.++++..+.-.-.. +-+.+ .|.++|-.|.+-
T Consensus 73 sGgGlVkVtvnG~~ev~~I~Idp~lldpeD~E-~LeDLI~aAvNd 116 (143)
T 1ybx_A 73 AGGGAVTVVATGRKDIKEITIKPEVVDPDDVE-MLQDLILAAVNE 116 (143)
T ss_dssp ETTTTEEEEEETTCCEEEEEECGGGCCTTCHH-HHHHHHHHHHHH
T ss_pred ECCCEEEEEEecCceEEEEEECHHHcCCcCHH-HHHHHHHHHHHH
Confidence 4567899999999999999754321 12334 366666555443
Done!