Query 022143
Match_columns 302
No_of_seqs 165 out of 573
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:22:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05712 MRG: MRG; InterPro: 100.0 1.1E-41 2.3E-46 303.3 11.1 143 160-302 18-179 (194)
2 KOG3001 Dosage compensation re 100.0 1.1E-37 2.5E-42 301.8 7.1 253 50-302 6-362 (391)
3 PF11717 Tudor-knot: RNA bindi 99.8 4E-21 8.6E-26 138.3 7.4 53 52-104 1-54 (55)
4 PLN00104 MYST -like histone ac 99.6 5.2E-15 1.1E-19 145.3 9.3 55 51-105 53-113 (450)
5 smart00561 MBT Present in Dros 97.9 3.9E-05 8.4E-10 61.3 7.6 56 47-106 23-83 (96)
6 smart00333 TUDOR Tudor domain. 97.9 3.2E-05 7E-10 54.9 5.5 51 51-106 2-53 (57)
7 smart00743 Agenet Tudor-like d 97.5 0.0004 8.8E-09 50.2 6.1 51 51-104 2-54 (61)
8 cd00024 CHROMO Chromatin organ 97.3 0.00025 5.4E-09 49.7 3.4 38 69-106 6-45 (55)
9 smart00298 CHROMO Chromatin or 97.2 0.00025 5.4E-09 49.5 2.9 37 69-105 5-42 (55)
10 COG5027 SAS2 Histone acetyltra 97.2 0.00028 6.1E-09 67.8 3.4 53 54-106 8-60 (395)
11 cd04508 TUDOR Tudor domains ar 97.1 0.0012 2.7E-08 45.0 5.3 45 55-104 1-47 (48)
12 PTZ00064 histone acetyltransfe 97.1 0.00018 4E-09 72.0 1.4 27 79-105 147-173 (552)
13 PF09465 LBR_tudor: Lamin-B re 97.0 0.0019 4E-08 46.4 5.5 40 48-89 2-43 (55)
14 PF06003 SMN: Survival motor n 96.9 0.0022 4.8E-08 60.1 6.4 58 48-109 65-124 (264)
15 PF05641 Agenet: Agenet domain 96.7 0.005 1.1E-07 45.8 5.9 52 52-106 1-63 (68)
16 cd05162 PWWP The PWWP domain, 96.4 0.0059 1.3E-07 47.3 4.9 59 52-112 1-67 (87)
17 PF00855 PWWP: PWWP domain; I 96.1 0.012 2.6E-07 44.9 5.2 57 52-111 1-62 (86)
18 PLN03239 histone acetyltransfe 95.4 0.0047 1E-07 59.8 0.5 23 83-105 1-23 (351)
19 cd05834 HDGF_related The PWWP 95.4 0.023 4.9E-07 44.2 4.2 57 51-109 2-60 (83)
20 cd05837 MSH6_like The PWWP dom 95.4 0.023 5E-07 46.4 4.4 59 51-110 2-71 (110)
21 PF00385 Chromo: Chromo (CHRro 95.2 0.055 1.2E-06 38.0 5.3 38 69-106 4-44 (55)
22 smart00293 PWWP domain with co 94.8 0.052 1.1E-06 39.7 4.5 54 52-107 1-63 (63)
23 PF02820 MBT: mbt repeat; Int 94.8 0.1 2.2E-06 39.3 6.0 39 64-106 12-52 (73)
24 KOG2748 Uncharacterized conser 92.9 0.012 2.6E-07 56.6 -2.6 42 65-106 9-51 (369)
25 PF07039 DUF1325: SGF29 tudor- 92.1 0.27 5.8E-06 41.4 4.9 44 48-92 68-113 (130)
26 cd05840 SPBC215_ISWI_like The 91.1 0.42 9.1E-06 37.9 4.6 59 52-112 1-70 (93)
27 cd05835 Dnmt3b_related The PWW 90.1 0.42 9E-06 37.3 3.8 55 52-108 1-60 (87)
28 PF15057 DUF4537: Domain of un 89.7 0.76 1.7E-05 38.3 5.3 59 51-112 55-118 (124)
29 cd05836 N_Pac_NP60 The PWWP do 88.5 0.91 2E-05 35.4 4.7 56 52-109 1-62 (86)
30 cd06080 MUM1_like Mutated mela 85.5 2.2 4.7E-05 33.0 5.2 53 52-107 1-54 (80)
31 cd05838 WHSC1_related The PWWP 85.4 1.3 2.7E-05 35.2 4.0 55 53-109 2-65 (95)
32 KOG4327 mRNA splicing protein 81.4 1.7 3.6E-05 39.2 3.5 42 51-94 67-110 (218)
33 KOG3766 Polycomb group protein 73.2 6.1 0.00013 40.3 5.2 50 50-102 199-252 (478)
34 PF00567 TUDOR: Tudor domain; 71.9 12 0.00025 29.0 5.7 52 51-107 51-104 (121)
35 KOG3038 Histone acetyltransfer 71.3 7.1 0.00015 36.6 4.8 39 48-87 195-235 (264)
36 PF08940 DUF1918: Domain of un 70.5 6.7 0.00015 28.6 3.5 37 53-89 4-43 (58)
37 PF15057 DUF4537: Domain of un 70.4 9.6 0.00021 31.7 5.0 47 55-107 1-49 (124)
38 cd05841 BS69_related The PWWP 69.6 8.8 0.00019 29.9 4.3 53 51-109 6-60 (83)
39 cd05839 BR140_related The PWWP 66.2 8 0.00017 31.8 3.6 59 52-111 1-83 (111)
40 KOG3001 Dosage compensation re 64.5 0.53 1.2E-05 46.6 -4.3 66 48-113 44-143 (391)
41 PHA02763 hypothetical protein; 55.6 1.3 2.7E-05 34.9 -2.7 52 51-103 27-79 (102)
42 KOG2747 Histone acetyltransfer 51.1 3.5 7.6E-05 40.9 -1.1 35 65-99 34-69 (396)
43 KOG3026 Splicing factor SPF30 48.7 19 0.00042 33.4 3.4 30 51-80 90-121 (262)
44 cd04716 BAH_plantDCM_I BAH, or 48.5 31 0.00067 28.6 4.3 33 50-82 2-36 (122)
45 KOG3766 Polycomb group protein 42.9 19 0.00041 36.8 2.7 52 46-101 302-356 (478)
46 cd04714 BAH_BAHCC1 BAH, or Bro 42.2 45 0.00097 27.3 4.4 29 51-79 3-34 (121)
47 KOG2039 Transcriptional coacti 41.7 51 0.0011 36.2 5.8 61 44-109 688-750 (875)
48 smart00739 KOW KOW (Kyprides, 41.4 51 0.0011 19.1 3.4 24 52-75 2-26 (28)
49 PF12148 DUF3590: Protein of u 40.4 82 0.0018 24.7 5.2 34 58-91 2-41 (85)
50 PF10781 DSRB: Dextransucrase 39.9 81 0.0017 23.0 4.7 38 53-90 2-40 (62)
51 PF13495 Phage_int_SAM_4: Phag 39.6 48 0.001 24.4 3.9 44 195-239 38-81 (85)
52 PRK10708 hypothetical protein; 37.6 94 0.002 22.6 4.7 38 53-90 2-40 (62)
53 smart00439 BAH Bromo adjacent 37.4 85 0.0018 24.6 5.2 29 52-80 2-33 (120)
54 cd04715 BAH_Orc1p_like BAH, or 36.3 80 0.0017 27.4 5.2 28 51-78 29-57 (159)
55 cd04370 BAH BAH, or Bromo Adja 33.1 71 0.0015 24.9 4.1 30 50-79 2-36 (123)
56 PF02839 CBM_5_12: Carbohydrat 32.9 33 0.00071 22.3 1.8 21 48-70 6-26 (41)
57 cd04717 BAH_polybromo BAH, or 32.8 1.1E+02 0.0023 24.8 5.2 29 50-78 2-33 (121)
58 PF04319 NifZ: NifZ domain; I 32.5 67 0.0014 24.6 3.6 12 51-62 4-15 (75)
59 PF15136 UPF0449: Uncharacteri 32.1 33 0.00072 27.6 1.9 22 190-211 6-27 (97)
60 PF07154 DUF1392: Protein of u 30.1 1.2E+02 0.0026 26.1 5.1 36 50-85 86-122 (150)
61 smart00324 RhoGAP GTPase-activ 28.9 3.5E+02 0.0075 22.7 9.3 60 190-250 23-83 (174)
62 TIGR00922 nusG transcription t 28.2 1.6E+02 0.0036 25.0 5.8 40 50-89 118-158 (172)
63 cd04390 RhoGAP_ARHGAP22_24_25 28.0 4.1E+02 0.0089 23.2 9.3 105 169-278 21-128 (199)
64 PF01426 BAH: BAH domain; Int 27.9 1.5E+02 0.0032 23.2 5.1 30 51-80 2-34 (119)
65 PF11390 FdsD: NADH-dependant 27.5 78 0.0017 23.2 3.1 33 268-300 1-33 (61)
66 TIGR01956 NusG_myco NusG famil 27.2 2.7E+02 0.0059 26.2 7.4 41 50-92 204-245 (258)
67 cd04721 BAH_plant_1 BAH, or Br 26.7 1.1E+02 0.0024 25.5 4.3 31 50-80 6-37 (130)
68 PRK05609 nusG transcription an 26.0 2.1E+02 0.0045 24.5 6.1 41 50-92 125-166 (181)
69 cd04720 BAH_Orc1p_Yeast BAH, o 25.1 1.1E+02 0.0025 26.9 4.3 48 50-98 51-100 (179)
70 COG3458 Acetyl esterase (deace 24.5 1.3E+02 0.0028 29.0 4.7 44 56-99 52-101 (321)
71 cd04375 RhoGAP_DLC1 RhoGAP_DLC 24.5 5.2E+02 0.011 23.2 8.8 35 259-293 123-157 (220)
72 cd04377 RhoGAP_myosin_IX RhoGA 23.9 4.8E+02 0.01 22.6 9.4 124 169-294 14-153 (186)
73 PF02559 CarD_CdnL_TRCF: CarD- 22.6 1.3E+02 0.0028 23.3 3.8 50 51-103 1-51 (98)
74 PF09038 53-BP1_Tudor: Tumour 22.0 1.7E+02 0.0036 24.5 4.4 35 54-91 5-42 (122)
75 cd04402 RhoGAP_ARHGAP20 RhoGAP 21.8 4.1E+02 0.0089 23.2 7.3 72 169-243 14-86 (192)
76 PF10377 ATG11: Autophagy-rela 21.4 1.4E+02 0.0031 24.9 4.0 34 51-90 42-81 (129)
77 KOG1904 Transcription coactiva 21.4 64 0.0014 33.2 2.2 58 51-110 12-73 (496)
78 COG1188 Ribosome-associated he 21.1 2E+02 0.0044 23.2 4.6 32 48-79 45-76 (100)
79 cd04396 RhoGAP_fSAC7_BAG7 RhoG 20.7 6.3E+02 0.014 22.8 8.9 73 169-243 31-107 (225)
80 KOG2573 Ribosome biogenesis pr 20.5 2.1E+02 0.0046 28.9 5.4 78 169-250 70-147 (498)
No 1
>PF05712 MRG: MRG; InterPro: IPR008676 This family consists of three different eukaryotic proteins (mortality factor 4 (MORF4/MRG15), male-specific lethal 3(MSL-3) and ESA1-associated factor 3(EAF3)). It is thought that the MRG family is involved in transcriptional regulation via histone acetylation [, ].; GO: 0005634 nucleus; PDB: 2AQL_A 2F5J_A 2LKM_B 2Y0N_D.
Probab=100.00 E-value=1.1e-41 Score=303.31 Aligned_cols=143 Identities=50% Similarity=0.752 Sum_probs=114.5
Q ss_pred cCCCceEEEeCChhHHHHHHHHHHHHhhcCceeeCCCCCCHHHHHHHHHHhhhccCCc--c-----hhhHHHHHHHHHHH
Q 022143 160 LQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGL--V-----ADSTGEIVKGLRCY 232 (302)
Q Consensus 160 ~~~~~~i~I~lP~~Lk~iLvdD~~~I~~~~~L~~LPa~~tV~~IL~dY~~~~~~~~~~--~-----~~~~~e~~~Gl~~y 232 (302)
......++|.||..|+++|+|||++|++.++|++|||++||++||++|+++....... . ...++|++.||++|
T Consensus 18 ~~~~~~~~i~lP~~Lk~~LvdD~~~I~~~~~l~~LP~~~~V~~IL~~y~~~~~~~~~~~~~~~~~~~~~~~e~~~Gl~~y 97 (194)
T PF05712_consen 18 SEEEPEIKIELPEELKKILVDDWELITKEKKLVKLPAKPSVDDILEDYVESFADSDDSEEESAEQERDLLKEVADGLRDY 97 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHTS-EEE-SS-SSBHHHHHHHHHHHHHHCHCSS---THH--HHHHHHHHHHHHH
T ss_pred cccCceEEEECCHHHHHHHHHHHHHHHcCCceeeCCCCCCHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHH
Confidence 3555678999999999999999999999999999999999999999999999743211 1 14689999999999
Q ss_pred HhhhcCcccCChhhHhhHHHhhhc------------CCCCCcccChHHHHHHhhhhhhhhhcCCCCHHHHHHHHHHHhhh
Q 022143 233 FDKALPIMLLYKSEREQYEDSMAA------------DVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDL 300 (302)
Q Consensus 233 Fn~~L~~~LLY~~Er~Qy~~~~~~------------~~~pS~~YG~~HLLRL~vkLP~ll~~~~~d~~s~~~l~~~l~~f 300 (302)
||++||++|||++||.||.+++.. +.+||++||++||||||++||+||+.++|++.+++.|+.++++|
T Consensus 98 Fn~~L~~~LLY~~Er~Qy~~~~~~~~~~~~~~~~~~~~~ps~~YG~~HLLRL~vkLPell~~~~~~~~~~~~l~~~l~~f 177 (194)
T PF05712_consen 98 FNKALGSQLLYKFERPQYDELLKKHATRDDSPPDEPGFRPSDIYGAIHLLRLFVKLPELLSSTNMDEESINILLEHLQDF 177 (194)
T ss_dssp HHHHCCCCTS-GGGHHHHHHHHHHS---------STTS-HHHC-BHHHHHHHHHHHHHHHCCCGGCHHHHHHHHHHHHHH
T ss_pred HHHHhccccCcHHHHHHHHHHHHhcccchhccccCCCCCHHhhccHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999864 46999999999999999999999999999999999999999999
Q ss_pred hC
Q 022143 301 LK 302 (302)
Q Consensus 301 l~ 302 (302)
|+
T Consensus 178 l~ 179 (194)
T PF05712_consen 178 LK 179 (194)
T ss_dssp HH
T ss_pred HH
Confidence 84
No 2
>KOG3001 consensus Dosage compensation regulatory complex/histone acetyltransferase complex, subunit MSL-3/MRG15/EAF3, and related CHROMO domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.1e-37 Score=301.77 Aligned_cols=253 Identities=34% Similarity=0.465 Sum_probs=192.3
Q ss_pred CCcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCHHhhhccchhhh----------
Q 022143 50 CPYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHRQPVFTK---------- 119 (302)
Q Consensus 50 ~~f~vge~vl~~~~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~en~~~q~~L~~---------- 119 (302)
+.|..||+|+|+|+...|+|+|++.........|.+||.||+..|||||+..+.++.+++|+..++.+..
T Consensus 6 ~~~~~~e~~~~~~~~~~~eak~~k~~~~~~~~~~~i~~~k~~~~~~e~v~~~~~~k~~e~~~~~~e~~~~~~~~~~~~~~ 85 (391)
T KOG3001|consen 6 IEVLSNERVLCFHGPLMEEAKIVKKEIGDKSSKYKIHRSKWRDSIGEEVPETLKLKPYEANAKDEEELRMNKSLSSQDED 85 (391)
T ss_pred ccccccceeeecccchhhhhhhhhhccccCcccccccccccCCccchhhhhhhcCCcchhhHHHHHHhhhhccccccccc
Confidence 3588999999999999999999999998899999999999999999999999999999999998887762
Q ss_pred -----hhh-hh-----hc---ccc------------CCccCC----------------C-------------CCCCCCCC
Q 022143 120 -----KRD-ED-----KN---LKS------------GHALQM----------------K-------------PRSSNVGR 144 (302)
Q Consensus 120 -----~~~-~~-----K~---~k~------------~r~~~~----------------k-------------~k~s~~~~ 144 (302)
... .. ++ .++ .+.... + .+..++..
T Consensus 86 ~~~~~~k~k~~~~~~~k~a~~~k~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~~~~s~~~~~k~~~~~~~~ 165 (391)
T KOG3001|consen 86 ETITKAKGKECKRKAFKGANPRKKHRTTMPTAGMNEEKIPVGKNVDRIKEGVDGQRKEKSNSGPPSLQGTRKSKQEKPST 165 (391)
T ss_pred cccccchhhHHHHHHhhccCccccccccccccccccccccccccccccccCccccccccCCCCCceeeeccccccccccc
Confidence 000 00 00 000 000000 0 00000000
Q ss_pred CC--------------------------ccCCCC---c----cccccccCCCceEEEeCChhHHHHHHHHHHHHhhcCce
Q 022143 145 GR--------------------------KRKNDS---L----NKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKL 191 (302)
Q Consensus 145 ~~--------------------------kr~~~~---~----~e~~~~~~~~~~i~I~lP~~Lk~iLvdD~~~I~~~~~L 191 (302)
++ +|.... . .+..........+.+.||..|+..|+|||+.+++..++
T Consensus 166 ~~~~~~s~~~s~~~~~~~~e~~~~~~~~~~~~~~e~s~~~~~v~~~~~~~~~~~v~~~l~~~~~~~l~dd~~~vt~~~~~ 245 (391)
T KOG3001|consen 166 SDKFDTSAAESVPSPAREQESSPQPPRKKRSTISESSESNPLVETPPTLPATVEVKLSLPQELKRSLVDDWDSVTEVDSL 245 (391)
T ss_pred CCCCCCchhccCCCccchhhcccccccccccccccccCCCCcccCCCCCCccccccccCchhhcccccchhhhhhhhhhh
Confidence 00 000000 0 00001111234688999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHhhhccCC--c-chhhHHHHHHHHHHHHhhhcCcccCChhhHhhHHHhhhcC---CCCCcccC
Q 022143 192 VKLPRTPNVDDILEKYCDYRSKKDG--L-VADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAAD---VSPSSVYG 265 (302)
Q Consensus 192 ~~LPa~~tV~~IL~dY~~~~~~~~~--~-~~~~~~e~~~Gl~~yFn~~L~~~LLY~~Er~Qy~~~~~~~---~~pS~~YG 265 (302)
+.+|+.++|+.|+..|......... . ....+.+...|+..|||.+||.+|||++||.||.+++.+. ..||++||
T Consensus 246 ~~~~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~g~~~yfn~~lG~~llyk~Er~qy~~~~~~~~~Ds~~s~vyG 325 (391)
T KOG3001|consen 246 AELPQDVTVEQILKKYGFSEKKASGLSNSKEPEVLEVAAGLKRYFNGQLGVMLLYKFERLQYAEVVAKYPKDSPPSNVYG 325 (391)
T ss_pred hcccCCchhhhhhhhhhHhhhhccccccccccccccccccceeeecccchhhhhhhhhhHHHHHHHhcCCCCCCcccchh
Confidence 9999999999999999988764331 1 1223344558999999999999999999999999998643 35999999
Q ss_pred hHHHHHHhhhhhhhhhcCCCCHHHHHHHHHHHhhhhC
Q 022143 266 AEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLK 302 (302)
Q Consensus 266 ~~HLLRL~vkLP~ll~~~~~d~~s~~~l~~~l~~fl~ 302 (302)
++||||||+|||+||..+.|++++++.|+.++++|++
T Consensus 326 a~HLlRLfvKLpe~l~~~~~~~~~l~~Ll~~~~~flk 362 (391)
T KOG3001|consen 326 AEHLLRLFVKLPEILKYTPMDEKSLALLLRHRKDFLK 362 (391)
T ss_pred HHHHHHHHhHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999985
No 3
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=99.84 E-value=4e-21 Score=138.25 Aligned_cols=53 Identities=42% Similarity=0.777 Sum_probs=48.2
Q ss_pred cCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 52 YQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 52 f~vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
|+||++|+|.+ .|.+|+|+|++++..++..+|||||.|||+||||||+.++|.
T Consensus 1 ~~vG~~v~~~~~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~DeWV~~~~i~ 54 (55)
T PF11717_consen 1 FEVGEKVLCKYKDGQWYEAKILDIREKNGEPEYYVHYQGWNKRLDEWVPESRIR 54 (55)
T ss_dssp --TTEEEEEEETTTEEEEEEEEEEEECTTCEEEEEEETTSTGCC-EEEETTTEE
T ss_pred CCcCCEEEEEECCCcEEEEEEEEEEecCCCEEEEEEcCCCCCCceeeecHHHcc
Confidence 68999999999 899999999999999999999999999999999999999874
No 4
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=99.57 E-value=5.2e-15 Score=145.32 Aligned_cols=55 Identities=27% Similarity=0.551 Sum_probs=49.7
Q ss_pred CcCCCCEEEEEeC--CeeeeeEEEEEEee----CCeeEEEEEEcCCCCCcceeeecccccc
Q 022143 51 PYQVNEKVLAFFQ--SHVYEAKVIQVQYR----LKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (302)
Q Consensus 51 ~f~vge~vl~~~~--~~~y~AkIl~i~~~----~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k 105 (302)
.|+||++|+|+|+ |.+|+|+|++++.. .+...|||||.|||+||||||+.+||.-
T Consensus 53 ~~~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~nrRlDEWV~~~rLdl 113 (450)
T PLN00104 53 PLEVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEFNRRLDEWVKLEQLDL 113 (450)
T ss_pred eeccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEecCCccHhhccCHhhccc
Confidence 5999999999997 89999999999973 3557899999999999999999999943
No 5
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.
Probab=97.94 E-value=3.9e-05 Score=61.30 Aligned_cols=56 Identities=21% Similarity=0.450 Sum_probs=46.2
Q ss_pred CCCCCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--ccccc
Q 022143 47 PASCPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (302)
Q Consensus 47 ~~~~~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~--ri~k~ 106 (302)
.+...|++|-++.+.+. ..++-|.|.++. +....|||.||..++|.|+..+ +|+..
T Consensus 23 ~~~~~F~vGmkLEavD~~~~~~i~vAtV~~v~----g~~l~v~~dg~~~~~D~W~~~~S~~I~Pv 83 (96)
T smart00561 23 SPPNGFKVGMKLEAVDPRNPSLICVATVVEVK----GYRLLLHFDGWDDKYDFWCDADSPDIHPV 83 (96)
T ss_pred CccCcccCCCEEEEECCCCCceEEEEEEEEEE----CCEEEEEEccCCCcCCEEEECCCCCcccC
Confidence 34557999999999885 478899999987 2389999999999999999975 66543
No 6
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=97.87 E-value=3.2e-05 Score=54.89 Aligned_cols=51 Identities=24% Similarity=0.391 Sum_probs=43.9
Q ss_pred CcCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccccc
Q 022143 51 PYQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (302)
Q Consensus 51 ~f~vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~ 106 (302)
.|++|+.|++.+ .|.||.|+|+++... ..|.|+|.++..+ +||+.+.|...
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~---~~~~V~f~D~G~~--~~v~~~~l~~l 53 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDGE---QLYEVFFIDYGNE--EVVPPSDLRPL 53 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECCC---CEEEEEEECCCcc--EEEeHHHeecC
Confidence 488999999998 889999999999764 5799999998876 89998877643
No 7
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=97.45 E-value=0.0004 Score=50.19 Aligned_cols=51 Identities=24% Similarity=0.276 Sum_probs=39.0
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
.|++|+.|.+++ .+.||+|+|+++.. ...|.|+|.+.+..--+-|+..+|+
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~~---~~~~~V~~~~~~~~~~e~v~~~~LR 54 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVLG---DGKYLVRYLTESEPLKETVDWSDLR 54 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEECC---CCEEEEEECCCCcccEEEEeHHHcc
Confidence 589999999999 89999999999875 3479999999433334444444443
No 8
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=97.31 E-value=0.00025 Score=49.67 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=32.2
Q ss_pred eEEEEEEeeC--CeeEEEEEEcCCCCCcceeeeccccccc
Q 022143 69 AKVIQVQYRL--KEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (302)
Q Consensus 69 AkIl~i~~~~--~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~ 106 (302)
.+|++.+... +...|+||+.||+.+.|.|++.++|...
T Consensus 6 e~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~l~~~ 45 (55)
T cd00024 6 EKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDC 45 (55)
T ss_pred eeeeeeeecCCCCcEEEEEEECCCCCccCccccHHHhCch
Confidence 5677766665 7889999999999999999999988754
No 9
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=97.25 E-value=0.00025 Score=49.54 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=32.3
Q ss_pred eEEEEEE-eeCCeeEEEEEEcCCCCCcceeeecccccc
Q 022143 69 AKVIQVQ-YRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (302)
Q Consensus 69 AkIl~i~-~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k 105 (302)
.+|++.+ ..++...|+|||.||+.++|.|++.++|..
T Consensus 5 ~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~ 42 (55)
T smart00298 5 EKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLN 42 (55)
T ss_pred heeeeeeecCCCcEEEEEEECCCCCccCceeeHHHHHH
Confidence 5788887 667778999999999999999999988864
No 10
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=97.19 E-value=0.00028 Score=67.77 Aligned_cols=53 Identities=23% Similarity=0.434 Sum_probs=46.6
Q ss_pred CCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccccc
Q 022143 54 VNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (302)
Q Consensus 54 vge~vl~~~~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~ 106 (302)
++.+|.+.-+|....|.|+++..+..+..|||||..+|+|.||||..+.|-++
T Consensus 8 ~~sk~~~~~d~e~~~~~Il~~~~~k~~~~fyvh~~~~nrrl~e~i~~~~i~~~ 60 (395)
T COG5027 8 IKSKVASEKDGEARKAEILEINTRKSRIKFYVHYVELNRRLDEWITADLINLG 60 (395)
T ss_pred EEeeeeeecCCceeEEeeeeeccCccCccEEEeehhhhhhhhhheeccccccc
Confidence 44566666678889999999999988899999999999999999999999774
No 11
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=97.11 E-value=0.0012 Score=45.03 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=36.7
Q ss_pred CCEEEEEeC--CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 55 NEKVLAFFQ--SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 55 ge~vl~~~~--~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
|+.|+|.+. +.||.|+|+++.. ...|.|+|.+++.. +.|+.+.|.
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~---~~~~~V~f~DyG~~--~~v~~~~l~ 47 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS---DGKVEVFFVDYGNT--EVVPLSDLR 47 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC---CCcEEEEEEcCCCc--EEEeHHHcC
Confidence 788999986 8999999999975 34799999999875 667766553
No 12
>PTZ00064 histone acetyltransferase; Provisional
Probab=97.11 E-value=0.00018 Score=72.00 Aligned_cols=27 Identities=30% Similarity=0.677 Sum_probs=24.1
Q ss_pred CeeEEEEEEcCCCCCcceeeecccccc
Q 022143 79 KEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (302)
Q Consensus 79 ~~~~Y~VHY~Gwn~r~DeWV~~~ri~k 105 (302)
+...|||||.|+|+|.||||..+||.-
T Consensus 147 ~~~eyYVHy~g~nrRlD~WV~~~ri~~ 173 (552)
T PTZ00064 147 EDYEFYVHFRGLNRRLDRWVKGKDIKL 173 (552)
T ss_pred CCeEEEEEecCcCchHhhhcChhhccc
Confidence 345999999999999999999999864
No 13
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=97.03 E-value=0.0019 Score=46.42 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=28.9
Q ss_pred CCCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEcC
Q 022143 48 ASCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYLG 89 (302)
Q Consensus 48 ~~~~f~vge~vl~~~~~--~~y~AkIl~i~~~~~~~~Y~VHY~G 89 (302)
|+..|..||.|.++|++ ++|+|+|++..... ..|.|-|..
T Consensus 2 p~~k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~--~~y~V~Y~D 43 (55)
T PF09465_consen 2 PSRKFAIGEVVMVRWPGSSLYYEGKVLSYDSKS--DRYTVLYED 43 (55)
T ss_dssp SSSSS-SS-EEEEE-TTTS-EEEEEEEEEETTT--TEEEEEETT
T ss_pred CcccccCCCEEEEECCCCCcEEEEEEEEecccC--ceEEEEEcC
Confidence 34579999999999975 79999999987654 378888863
No 14
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=96.88 E-value=0.0022 Score=60.07 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=41.3
Q ss_pred CCCCcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCHH
Q 022143 48 ASCPYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (302)
Q Consensus 48 ~~~~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~e 109 (302)
+...+.||++|+|.| +|.+|+|+|.+|....+ .+.|.|.||+.+ |.|....|+..+..
T Consensus 65 ~~~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~--~~~V~f~gYgn~--e~v~l~dL~~~~~~ 124 (264)
T PF06003_consen 65 PNKKWKVGDKCMAVYSEDGQYYPATIESIDEEDG--TCVVVFTGYGNE--EEVNLSDLKPSEGD 124 (264)
T ss_dssp TTT---TT-EEEEE-TTTSSEEEEEEEEEETTTT--EEEEEETTTTEE--EEEEGGGEEETT--
T ss_pred cccCCCCCCEEEEEECCCCCEEEEEEEEEcCCCC--EEEEEEcccCCe--Eeeehhhhcccccc
Confidence 334799999999998 47999999999986554 677999999865 78887777766544
No 15
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=96.69 E-value=0.005 Score=45.81 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=35.5
Q ss_pred cCCCCEEEEEe-----CCeeeeeEEEEEEeeCCeeEEEEEEcCCCC------Ccceeeeccccccc
Q 022143 52 YQVNEKVLAFF-----QSHVYEAKVIQVQYRLKEWTFRVHYLGWNK------SWDEWVGVHRLMKD 106 (302)
Q Consensus 52 f~vge~vl~~~-----~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~------r~DeWV~~~ri~k~ 106 (302)
|++|+.|.+.. .|.||.|+|++....+ .|+|-|..... ..-|||...+|+..
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~---~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~ 63 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGDD---KYLVEYDDLPDEDGESPPLKEWVDARRIRPC 63 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT----EEEEEETT-SS--------EEEEEGGGEEE-
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCCc---EEEEEECCcccccccccccEEEechheEECc
Confidence 78999999876 4799999999987654 99999964433 37899998887654
No 16
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=96.41 E-value=0.0059 Score=47.27 Aligned_cols=59 Identities=27% Similarity=0.407 Sum_probs=47.8
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEeeC-------CeeEEEEEEcCCCCCcceeeecccccccCHHhhh
Q 022143 52 YQVNEKVLAFFQS-HVYEAKVIQVQYRL-------KEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRH 112 (302)
Q Consensus 52 f~vge~vl~~~~~-~~y~AkIl~i~~~~-------~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~en~~ 112 (302)
|.+||.|++..+| -|+.|.|++..... ....|.|+|-| ...| -||..++|..+++....
T Consensus 1 f~~GdlVwaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg-~~~~-~wv~~~~l~pf~~~~~~ 67 (87)
T cd05162 1 FRPGDLVWAKMKGYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFG-DKTF-AWVGAERLKPFTEHKES 67 (87)
T ss_pred CCCCCEEEEeCCCCCCCCEEEccccccchhhhccCCCCEEEEEEeC-CCcE-EEeCccceeeccchHHh
Confidence 7899999999888 79999999987642 24699999999 4434 89999999988766543
No 17
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=96.12 E-value=0.012 Score=44.93 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=46.5
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEee----CCeeEEEEEEcCCCCCcceeeecccccccCHHhh
Q 022143 52 YQVNEKVLAFFQS-HVYEAKVIQVQYR----LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANR 111 (302)
Q Consensus 52 f~vge~vl~~~~~-~~y~AkIl~i~~~----~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~en~ 111 (302)
|.+|+.|.+.-+| .|++|+|+..... .....|+|.|-|=+ .+ -||+.++|..++ ++.
T Consensus 1 f~~GdlVWaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~~-~~-~wv~~~~i~~f~-~~~ 62 (86)
T PF00855_consen 1 FRPGDLVWAKLKGYPWWPARVCDPDEKSKKKRKDGHVLVRFFGDN-DY-AWVKPSNIKPFS-EFK 62 (86)
T ss_dssp -STTEEEEEEETTSEEEEEEEEECCHCTSCSSSSTEEEEEETTTT-EE-EEEEGGGEEECC-HHH
T ss_pred CCCCCEEEEEeCCCCCCceEEeecccccccCCCCCEEEEEecCCC-CE-EEECHHHhhChh-hhH
Confidence 7899999998876 7999999998642 34569999999988 45 799999999998 444
No 18
>PLN03239 histone acetyltransferase; Provisional
Probab=95.44 E-value=0.0047 Score=59.76 Aligned_cols=23 Identities=30% Similarity=0.749 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCcceeeecccccc
Q 022143 83 FRVHYLGWNKSWDEWVGVHRLMK 105 (302)
Q Consensus 83 Y~VHY~Gwn~r~DeWV~~~ri~k 105 (302)
|||||.+.|+|.|+||+.+.|..
T Consensus 1 yYVh~~~~nkRlD~Wv~~~~l~~ 23 (351)
T PLN03239 1 YYVHYKDFNRRMDEWISKDKSNE 23 (351)
T ss_pred CeEEeccccchHhhhcChhhcch
Confidence 89999999999999999988733
No 19
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=95.44 E-value=0.023 Score=44.17 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=47.8
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEee-CCeeEEEEEEcCCCCCcceeeecccccccCHH
Q 022143 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYR-LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (302)
Q Consensus 51 ~f~vge~vl~~~~~-~~y~AkIl~i~~~-~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~e 109 (302)
.|.+||.|++.-.| -++.|+|++.... .....|.|.|-|.+.+ -||+.+.|..+++.
T Consensus 2 ~f~~GdlVwaK~kGyp~WPa~I~~~~~~~~~~~~~~V~FfGt~~~--a~v~~~~l~pf~~~ 60 (83)
T cd05834 2 QFKAGDLVFAKVKGYPAWPARVDEPEDWKPPGKKYPVYFFGTHET--AFLKPEDLFPYTEN 60 (83)
T ss_pred CCCCCCEEEEecCCCCCCCEEEecccccCCCCCEEEEEEeCCCCE--eEECHHHceecccc
Confidence 58999999998877 7899999998753 2346899999998775 89999999888764
No 20
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=95.40 E-value=0.023 Score=46.36 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=47.7
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEE----------EeeCCeeEEEEEEcCCCCCcceeeecccccccCHHh
Q 022143 51 PYQVNEKVLAFFQS-HVYEAKVIQV----------QYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEAN 110 (302)
Q Consensus 51 ~f~vge~vl~~~~~-~~y~AkIl~i----------~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~en 110 (302)
.|.+|+.|.+.-.| -|+.|.|..- ........|+|.|-|-+.+| -||+...|..++..+
T Consensus 2 ~~~~GdlVWaK~~g~PwWPa~V~~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~~-aWv~~~~l~pf~~~~ 71 (110)
T cd05837 2 KYQVGDLVWAKVSGYPWWPCMVCSDPLLGTYTKTKRNKRKPRQYHVQFFGDNPER-AWISEKSLKPFKGSK 71 (110)
T ss_pred CCCCCCEEEEeCCCCCCCCEEEecccccchhhhhhhccCCCCeEEEEEcCCCCCE-EEecHHHccccCCch
Confidence 59999999998877 6899999952 12234569999999998777 599999999887655
No 21
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=95.20 E-value=0.055 Score=38.00 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=32.9
Q ss_pred eEEEEEEeeCCee---EEEEEEcCCCCCcceeeeccccccc
Q 022143 69 AKVIQVQYRLKEW---TFRVHYLGWNKSWDEWVGVHRLMKD 106 (302)
Q Consensus 69 AkIl~i~~~~~~~---~Y~VHY~Gwn~r~DeWV~~~ri~k~ 106 (302)
-+|++.+..+++. .|+|++.|+....+-|++++.|...
T Consensus 4 e~Il~~r~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~ 44 (55)
T PF00385_consen 4 ERILDHRVVKGGNKVYEYLVKWKGYPYSENTWEPEENLKNC 44 (55)
T ss_dssp EEEEEEEEETTEESEEEEEEEETTSSGGGEEEEEGGGCSSH
T ss_pred EEEEEEEEeCCCcccEEEEEEECCCCCCCCeEeeHHHHhHh
Confidence 3788888877766 9999999999999999999988764
No 22
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=94.85 E-value=0.052 Score=39.68 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=43.8
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEee--------CCeeEEEEEEcCCCCCcceeeecccccccC
Q 022143 52 YQVNEKVLAFFQS-HVYEAKVIQVQYR--------LKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (302)
Q Consensus 52 f~vge~vl~~~~~-~~y~AkIl~i~~~--------~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t 107 (302)
|.+||.|++.-.| -|+.|+|+.-... .....|.|.|-|=+.. -||..++|..+|
T Consensus 1 f~~GdlVwaK~~G~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~--awv~~~~l~p~~ 63 (63)
T smart00293 1 FKPGDLVWAKMKGFPWWPALVVSPKETPDNIRKRKRFENLYPVLFFGDKDT--AWISSSKLFPLT 63 (63)
T ss_pred CCCCCEEEEECCCCCCCCeEEcCcccCChhHhhccCCCCEEEEEEeCCCCE--EEECccceeeCC
Confidence 6899999999888 7999999988642 2346999999996655 999999887653
No 23
>PF02820 MBT: mbt repeat; InterPro: IPR004092 The function of the malignant brain tumor (MBT) repeat is unknown, but is found in a number of nuclear proteins involved in transcriptional repression. The repeat contains a completely conserved glutamate at its amino terminus that may be important for function. The crystal structure of the two MBT repeats of human SCM-like 2 protein has been reported. Each repeat consists of an extended "arm" and a globular core. The arm of the first repeat packs against the core of the second repeat and vice versa. The structure of the core-interacting part of each arm consists of an N-terminal alpha-helix and a turn of 310 helix connected by a short beta-strand. The core consists of an Src homology 3-like five-stranded beta-barrel followed by a C-terminal alpha-helix and another short beta-strand. Each arm interacts with its partner core in a similar way, with the orientation of the N-terminal helix relative to the barrel varying slightly. There are also extensive interactions between the two barrels [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P0K_A 3F70_B 3CEY_A 2VYT_A 2BIV_A 1OI1_A 3OQ5_A 2RJE_B 2RJD_A 2RI3_A ....
Probab=94.75 E-value=0.1 Score=39.25 Aligned_cols=39 Identities=28% Similarity=0.562 Sum_probs=32.4
Q ss_pred CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--ccccc
Q 022143 64 SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (302)
Q Consensus 64 ~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~--ri~k~ 106 (302)
..++.|.|+++... ...|||.||...+|.|+..+ +|+..
T Consensus 12 ~~~~vAtV~~v~g~----~l~v~~dg~~~~~d~w~~~~S~~i~Pv 52 (73)
T PF02820_consen 12 SLICVATVVKVCGG----RLLVRYDGWDDDYDFWCHIDSPRIFPV 52 (73)
T ss_dssp CEEEEEEEEEEETT----EEEEEETTSTGGGEEEEETTSTTEEET
T ss_pred CeEEEEEEEEEeCC----EEEEEEcCCCCCccEEEECCCCCeeec
Confidence 57889999999733 48999999999999999974 77654
No 24
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=92.90 E-value=0.012 Score=56.61 Aligned_cols=42 Identities=17% Similarity=0.561 Sum_probs=35.1
Q ss_pred eeeee-EEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccccc
Q 022143 65 HVYEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (302)
Q Consensus 65 ~~y~A-kIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~ 106 (302)
..|.| .||+-+.++|...|||-+.||+.+|+-|=|+..|+--
T Consensus 9 ~VfAaEsIlkkRirKGrvEYlVKWkGWs~kyNTWEPEENILDp 51 (369)
T KOG2748|consen 9 RVFAAESILKKRIRKGRVEYLVKWKGWSQKYNTWEPEENILDP 51 (369)
T ss_pred hHHHHHHHHHHHhhccceEEEEEecccccccCccCccccccCH
Confidence 34555 5777777889999999999999999999999877754
No 25
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=92.14 E-value=0.27 Score=41.39 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=30.1
Q ss_pred CCCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEcCCCC
Q 022143 48 ASCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYLGWNK 92 (302)
Q Consensus 48 ~~~~f~vge~vl~~~~~--~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~ 92 (302)
+...|..|.+||+.|.+ ..|.|.|..... .....|.+.|.|=..
T Consensus 68 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~-~~~~~y~l~Fedd~~ 113 (130)
T PF07039_consen 68 PLAEFPKGTKVLALYPDTTCFYPATVVSPPK-KKSGEYKLKFEDDED 113 (130)
T ss_dssp GGGS--TT-EEEEE-TTSSEEEEEEEEEE-S-STTS-EEEEECTTTS
T ss_pred chhhCCCCCEEEEECCCCceEEEEEEEeCCC-CCCCcEEEEEeCCCC
Confidence 44479999999999975 799999999844 334589999998654
No 26
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=91.07 E-value=0.42 Score=37.88 Aligned_cols=59 Identities=22% Similarity=0.244 Sum_probs=46.0
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEE----------eeCCeeEEEEEEcCCCCCcceeeecccccccCHHhhh
Q 022143 52 YQVNEKVLAFFQS-HVYEAKVIQVQ----------YRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRH 112 (302)
Q Consensus 52 f~vge~vl~~~~~-~~y~AkIl~i~----------~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~en~~ 112 (302)
|.+||.|++.-+| -|+.|.|+.-+ .+.+...|.|.|-|=+ ==-||..++|..+++++..
T Consensus 1 f~~GDlVwaK~~GyPwWPA~V~~~~~~p~~~l~~~~~~~~~~~~V~FFg~~--~~~Wv~~~~l~pl~~~~~~ 70 (93)
T cd05840 1 FQPGDRVLAKVKGFPAWPAIVVPEEMLPDSVLKGKKKKNKRTYPVMFFPDG--DYYWVPNKDLKPLTEEKIA 70 (93)
T ss_pred CCCCCEEEEeCCCCCCCCEEECChHHCCHHHHhcccCCCCCeEEEEEeCCC--cEEEEChhhcccCCHHHHH
Confidence 6899999998877 79999998732 2234568999998833 2259999999999987764
No 27
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=90.09 E-value=0.42 Score=37.28 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=43.8
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEeeC----CeeEEEEEEcCCCCCcceeeecccccccCH
Q 022143 52 YQVNEKVLAFFQS-HVYEAKVIQVQYRL----KEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (302)
Q Consensus 52 f~vge~vl~~~~~-~~y~AkIl~i~~~~----~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~ 108 (302)
|.+||.|.+.=.| .|++|+|.+..... ....|.|+|-|.+. =.||..++|..+.+
T Consensus 1 f~vGDlVWaK~kg~pwWP~~V~~~~~~~~~~~~~~~~~V~fFGs~~--~a~v~~~~l~pf~e 60 (87)
T cd05835 1 FNVGDLVWGKIKGFPWWPGRVVSITVTSKRPPVVGMRWVTWFGSGT--FSEVSVDKLSPFSE 60 (87)
T ss_pred CCCCCEEEEecCCCCCCCeEEechhhcccccCCCCeEEEEEeCCCC--EeEECHHHCcChhH
Confidence 7899999998766 79999999886532 23589999999655 47999999988754
No 28
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=89.70 E-value=0.76 Score=38.26 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=44.5
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEee--CCeeEEEEEEcCCCCCcceeeecccccccCHHhhh
Q 022143 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYR--LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRH 112 (302)
Q Consensus 51 ~f~vge~vl~~~~---~~~y~AkIl~i~~~--~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~en~~ 112 (302)
..++||.|++.|. ..++.|+|+..-+. .....|.||| ||-+ -.+|+.+.+++.+++-++
T Consensus 55 ~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f--~ng~-~~~vp~~~~~~I~~~~y~ 118 (124)
T PF15057_consen 55 SLQVGDKVLAPWEPDDCRYGPGTVIAGPERRASEDKEYTVRF--YNGK-TAKVPRGEVIWISPSYYE 118 (124)
T ss_pred cCCCCCEEEEecCcCCCEEeCEEEEECccccccCCceEEEEE--ECCC-CCccchhhEEECCHHHHH
Confidence 4889999999985 36888999975432 2346999998 7776 678888888887665443
No 29
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=88.51 E-value=0.91 Score=35.37 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=43.6
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEe-----eCCeeEEEEEEcCCCCCcceeeecccccccCHH
Q 022143 52 YQVNEKVLAFFQS-HVYEAKVIQVQY-----RLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (302)
Q Consensus 52 f~vge~vl~~~~~-~~y~AkIl~i~~-----~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~e 109 (302)
|++||.|.+.-+| -++.|+|++-.. ......|.|.|-|=+.. -||..+.|..+++.
T Consensus 1 f~~GDlVwaK~~g~P~WPa~V~~~~~~~~~~~~~~~~~~V~FFG~~~~--~wv~~~~l~pF~~~ 62 (86)
T cd05836 1 LKLGDLVWAKMKGFPPWPGRIVKPPKDLKKPRGKAKCFFVFFFGSENH--AWIKEENIKPYHEH 62 (86)
T ss_pred CCCCCEEEEeCCCCCCCCEEEechhhhcccccCCCCeEEEEEeCCCCE--EEECHHhCeechhh
Confidence 7899999998877 689999987432 12236899999996643 89999999888654
No 30
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=85.48 E-value=2.2 Score=33.04 Aligned_cols=53 Identities=21% Similarity=0.252 Sum_probs=42.2
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccC
Q 022143 52 YQVNEKVLAFFQS-HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (302)
Q Consensus 52 f~vge~vl~~~~~-~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t 107 (302)
|.+||.|.+.-.| -++.|+|.++... ...|.|-|.|=+. --.|+..+.++++.
T Consensus 1 f~~gdlVWaK~~g~P~WPa~I~~~~~~--~~k~~V~FfG~~~-~~a~~~~~~l~p~~ 54 (80)
T cd06080 1 FEKNDLVWAKIQGYPWWPAVIKSISRK--KQKARVNFIGDNM-QSEKKGIRVVKRWL 54 (80)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeeecCC--CCEEEEEEeCCCC-ceeccchhhccccc
Confidence 7899999998877 6899999998654 5589999999772 34678887777663
No 31
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=85.42 E-value=1.3 Score=35.19 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=42.9
Q ss_pred CCCCEEEEEeCC-eeeeeEEEEEEee--------CCeeEEEEEEcCCCCCcceeeecccccccCHH
Q 022143 53 QVNEKVLAFFQS-HVYEAKVIQVQYR--------LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (302)
Q Consensus 53 ~vge~vl~~~~~-~~y~AkIl~i~~~--------~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~e 109 (302)
.+||.|.+.-+| .|+.|.|++-... .....|.|+|-|-+.. -||...+|+.+.+.
T Consensus 2 ~~GdlVWaK~~g~pwWPa~V~~~~~~p~~~~~~~~~~~~~~V~Ffgs~~y--~Wv~~~~l~pf~e~ 65 (95)
T cd05838 2 LYGDIVWAKLGNFRWWPAIICDPREVPPNIQVLRHCIGEFCVMFFGTHDY--YWVHRGRVFPYQEG 65 (95)
T ss_pred CcCCEEEEECCCCCCCCeEEcChhhcChhHhhccCCCCeEEEEEeCCCCE--EEeccccccchhhh
Confidence 479999999877 7999999985421 2235899999997654 59999999988654
No 32
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification]
Probab=81.42 E-value=1.7 Score=39.18 Aligned_cols=42 Identities=21% Similarity=0.510 Sum_probs=34.2
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCc
Q 022143 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSW 94 (302)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~ 94 (302)
.|+||++|.+.| ++..|+|.|..|....+.-. |.|.|+..|-
T Consensus 67 ~wKVgdkc~A~Y~e~g~~ypatidsi~~~~~tcv--v~ylgygnr~ 110 (218)
T KOG4327|consen 67 QWKVGDKCSAIYSEDGCIYPATIDSIDFKRETCV--VVYLGYGNRE 110 (218)
T ss_pred hheecceeeeeeecCcccccceecccccccCceE--EEEEeecchh
Confidence 799999999976 46789999999987655443 8899998763
No 33
>KOG3766 consensus Polycomb group protein SCM/L(3)MBT (tumor-supressor in Drosophila and humans) [Transcription]
Probab=73.16 E-value=6.1 Score=40.29 Aligned_cols=50 Identities=32% Similarity=0.470 Sum_probs=43.0
Q ss_pred CCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCC-cceeeeccc
Q 022143 50 CPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKS-WDEWVGVHR 102 (302)
Q Consensus 50 ~~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r-~DeWV~~~r 102 (302)
..|+||.++.+... ..+-.|.|.+|... ....||+.||... +|.|+..+.
T Consensus 199 ~~F~vgmkLEavd~~np~~IcvATV~~V~~~---~~i~v~~d~~~~~~~d~~~~~~s 252 (478)
T KOG3766|consen 199 SRFQVGMKLEAVDDLNPSAICVATVVEVFDS---REILVHFDGWDKSELDYWCDHDS 252 (478)
T ss_pred CcceeccEEEEeccCCCcceeeeehheeccc---ceEEEEeccCCCcccceeEecCC
Confidence 47999999999874 57899999998765 2589999999999 999999875
No 34
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=71.88 E-value=12 Score=29.01 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=36.2
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccC
Q 022143 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (302)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t 107 (302)
...+|+-++|.. ++.||.|+| ....+...|.|.|..+... ++|+.+.|....
T Consensus 51 ~~~~~~~~~~~~~~~~~w~Ra~I---~~~~~~~~~~V~~iD~G~~--~~v~~~~l~~l~ 104 (121)
T PF00567_consen 51 ESNPGEGCLCVVSEDGRWYRAVI---TVDIDENQYKVFLIDYGNT--EKVSASDLRPLP 104 (121)
T ss_dssp T--TTEEEEEEETTTSEEEEEEE---EEEECTTEEEEEETTTTEE--EEEEGGGEEE--
T ss_pred ccccCCEEEEEEecCCceeeEEE---EEecccceeEEEEEecCce--EEEcHHHhhhhC
Confidence 466888888875 589999999 2222345899999999864 568888887654
No 35
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=71.25 E-value=7.1 Score=36.57 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=29.5
Q ss_pred CCCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEE
Q 022143 48 ASCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHY 87 (302)
Q Consensus 48 ~~~~f~vge~vl~~~~~--~~y~AkIl~i~~~~~~~~Y~VHY 87 (302)
|...|..|..||+.+++ ++|.|.|++.-.+.. ..|+|-|
T Consensus 195 p~~~fpp~~~VLA~YP~TTcFY~aiVh~tp~d~s-~~y~vlf 235 (264)
T KOG3038|consen 195 PTALFPPGTIVLAVYPGTTCFYKAIVHSTPRDGS-CDYYVLF 235 (264)
T ss_pred CccCCCCCCEEEEEcCCcceeeeeEeecCCCCCC-Ccceeee
Confidence 44579999999999986 799999998765533 3455543
No 36
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=70.53 E-value=6.7 Score=28.56 Aligned_cols=37 Identities=8% Similarity=0.079 Sum_probs=24.9
Q ss_pred CCCCEEEEEe---CCeeeeeEEEEEEeeCCeeEEEEEEcC
Q 022143 53 QVNEKVLAFF---QSHVYEAKVIQVQYRLKEWTFRVHYLG 89 (302)
Q Consensus 53 ~vge~vl~~~---~~~~y~AkIl~i~~~~~~~~Y~VHY~G 89 (302)
.+||++++.- +..-..+.|+++...+|.+-|.|+|..
T Consensus 4 ~vGD~lvv~g~~vg~~~r~GeIveV~g~dG~PPY~VRw~D 43 (58)
T PF08940_consen 4 SVGDRLVVHGRTVGQPDRHGEIVEVRGPDGSPPYLVRWDD 43 (58)
T ss_dssp -TTEEEEES-TTTS--EEEEEEEE-S-SSS-S-EEEEETT
T ss_pred CCCCEEEEcCCcCCCCCcEeEEEEEECCCCCCCEEEEecC
Confidence 5899888764 336789999999999999999999763
No 37
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=70.40 E-value=9.6 Score=31.65 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=34.1
Q ss_pred CCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccC
Q 022143 55 NEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (302)
Q Consensus 55 ge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t 107 (302)
|.+|+|++ +|.+|.|.|.+.- +..+|+|+| +...=+.|+...|+.+.
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~---~~~~~lV~f---~~~~~~~v~~~~iI~~~ 49 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV---SSGQFLVEF---DDGDTQEVPISDIIALS 49 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc---CCCEEEEEE---CCCCEEEeChHHeEEcc
Confidence 78999998 4899999999876 345999999 22223566666665553
No 38
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=69.55 E-value=8.8 Score=29.89 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=41.9
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEeeCCeeEEEEEEcC-CCCCcceeeecccccccCHH
Q 022143 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYRLKEWTFRVHYLG-WNKSWDEWVGVHRLMKDTEA 109 (302)
Q Consensus 51 ~f~vge~vl~~~~~-~~y~AkIl~i~~~~~~~~Y~VHY~G-wn~r~DeWV~~~ri~k~t~e 109 (302)
.+..||.|.+...| -++.|+|++... ..|.|.|-| =..+ -||+..+|..++.+
T Consensus 6 c~~p~dLVwAK~kGyp~WPAkV~~~~~----~~~~V~FFG~t~~~--a~v~~~~i~~~~~~ 60 (83)
T cd05841 6 CRPPHELVWAKLKGFPYWPAKVMRVED----NQVDVRFFGGQHDR--AWIPSNNIQPISTE 60 (83)
T ss_pred cCCCCCEEEEeCCCCCCCCEEEeecCC----CeEEEEEcCCCCCe--EEEehHHeeehhhh
Confidence 46789999999888 689999998643 489999988 3222 59999999988654
No 39
>cd05839 BR140_related The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, BR140 is disrupted by chromosomal translocations, similar to translocations of WHSC1 in lymphoid multiple myeloma. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=66.22 E-value=8 Score=31.78 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=43.9
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEe-----------------------eCCeeEEEEEEcCCCCCcceeeecccccccC
Q 022143 52 YQVNEKVLAFFQS-HVYEAKVIQVQY-----------------------RLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (302)
Q Consensus 52 f~vge~vl~~~~~-~~y~AkIl~i~~-----------------------~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t 107 (302)
++.|+.|.+...| -||.|-|++-.. ..+...|+|+|-+=...| -||+...|...+
T Consensus 1 ~~pg~lVwaK~~g~P~wPa~iidp~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~lV~FFd~~~s~-~Wv~~~~l~pl~ 79 (111)
T cd05839 1 LEPLTLVWAKCRGYPSYPALIIDPKMPRDGVFHNGVPPDVLTLGEARAQNADERLYLVLFFDNKRTW-QWLPGDKLEPLG 79 (111)
T ss_pred CCCcCEeeeeecCCCCCCeEeeCCCCCCcccccCCCCchhhhHHHHHhccCCCcEEEEEEecCCCcc-eecCHHHCcccc
Confidence 3578999998777 689999998541 224568999998755555 599999988877
Q ss_pred HHhh
Q 022143 108 EANR 111 (302)
Q Consensus 108 ~en~ 111 (302)
.++.
T Consensus 80 ~~~~ 83 (111)
T cd05839 80 VDET 83 (111)
T ss_pred cchh
Confidence 6554
No 40
>KOG3001 consensus Dosage compensation regulatory complex/histone acetyltransferase complex, subunit MSL-3/MRG15/EAF3, and related CHROMO domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=64.50 E-value=0.53 Score=46.64 Aligned_cols=66 Identities=18% Similarity=0.168 Sum_probs=51.0
Q ss_pred CCCCcCCCCEEEEEeCCeeeeeEEEEEEeeC------------------CeeEEEEEEcCCCCCcc------------ee
Q 022143 48 ASCPYQVNEKVLAFFQSHVYEAKVIQVQYRL------------------KEWTFRVHYLGWNKSWD------------EW 97 (302)
Q Consensus 48 ~~~~f~vge~vl~~~~~~~y~AkIl~i~~~~------------------~~~~Y~VHY~Gwn~r~D------------eW 97 (302)
++-.|.+||.|.|.....+|+|.+...+... +..+|.+|+.|||.|.| +-
T Consensus 44 ~k~~~~~~e~v~~~~~~k~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~k~a~~~k~~~~~~~~~~~~~~~ 123 (391)
T KOG3001|consen 44 SKWRDSIGEEVPETLKLKPYEANAKDEEELRMNKSLSSQDEDETITKAKGKECKRKAFKGANPRKKHRTTMPTAGMNEEK 123 (391)
T ss_pred cccCCccchhhhhhhcCCcchhhHHHHHHhhhhccccccccccccccchhhHHHHHHhhccCcccccccccccccccccc
Confidence 3446889999999999999999887766533 23477799999999999 66
Q ss_pred eec----ccccccCHHhhhc
Q 022143 98 VGV----HRLMKDTEANRHR 113 (302)
Q Consensus 98 V~~----~ri~k~t~en~~~ 113 (302)
++. +|+++.+..++..
T Consensus 124 ~~~~~~~d~~~~~~~g~~~~ 143 (391)
T KOG3001|consen 124 IPVGKNVDRIKEGVDGQRKE 143 (391)
T ss_pred ccccccccccccCccccccc
Confidence 664 6888887777654
No 41
>PHA02763 hypothetical protein; Provisional
Probab=55.65 E-value=1.3 Score=34.93 Aligned_cols=52 Identities=21% Similarity=0.324 Sum_probs=40.0
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEeeC-CeeEEEEEEcCCCCCcceeeecccc
Q 022143 51 PYQVNEKVLAFFQSHVYEAKVIQVQYRL-KEWTFRVHYLGWNKSWDEWVGVHRL 103 (302)
Q Consensus 51 ~f~vge~vl~~~~~~~y~AkIl~i~~~~-~~~~Y~VHY~Gwn~r~DeWV~~~ri 103 (302)
-|++|++|...-++..+.|||+.+..-. .-..=||.|.|+++ -.||+.+.|=
T Consensus 27 ~YK~gqkv~l~v~dr~f~gKvIa~ap~t~~~LsKYv~~SGFe~-VEeWl~eArr 79 (102)
T PHA02763 27 FYKIGQKVILKVGDKRFPGKVIAKAPVTEYCLSKYVKFSGFEN-VEEWLNEARR 79 (102)
T ss_pred hhccCcEEEEEecCccccceEEEecCchHHHHHHHhhhcchhh-HHHHHHHHHH
Confidence 4899999998888888999999986532 12244789999986 6789987543
No 42
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=51.08 E-value=3.5 Score=40.87 Aligned_cols=35 Identities=26% Similarity=0.512 Sum_probs=25.8
Q ss_pred eeeeeEEEEEEeeCC-eeEEEEEEcCCCCCcceeee
Q 022143 65 HVYEAKVIQVQYRLK-EWTFRVHYLGWNKSWDEWVG 99 (302)
Q Consensus 65 ~~y~AkIl~i~~~~~-~~~Y~VHY~Gwn~r~DeWV~ 99 (302)
..-.|.+........ ...|+|||++.|+|.|+|++
T Consensus 34 ~~~~~~~~~~~~~~s~~~~~~v~~~~~~~r~d~~~~ 69 (396)
T KOG2747|consen 34 ENRKAETLPRKLIQSASLEYYVHYQKLNRRLDEWIG 69 (396)
T ss_pred ccccccccccccccCCCccchhhHHhhhcccccccc
Confidence 344445554444433 56999999999999999999
No 43
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=48.75 E-value=19 Score=33.41 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=25.4
Q ss_pred CcCCCCEEEEEeC--CeeeeeEEEEEEeeCCe
Q 022143 51 PYQVNEKVLAFFQ--SHVYEAKVIQVQYRLKE 80 (302)
Q Consensus 51 ~f~vge~vl~~~~--~~~y~AkIl~i~~~~~~ 80 (302)
.|.||++|.+.|. |.||+|.|-.|....++
T Consensus 90 ~w~vg~K~~A~~~ddg~~y~AtIe~ita~~~~ 121 (262)
T KOG3026|consen 90 GWKVGDKVQAVFSDDGQIYDATIEHITAMEGT 121 (262)
T ss_pred ccccCCEEEEeecCCCceEEeehhhccCCCCc
Confidence 6999999999874 79999999999875443
No 44
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=48.52 E-value=31 Score=28.65 Aligned_cols=33 Identities=9% Similarity=0.049 Sum_probs=25.5
Q ss_pred CCcCCCCEEEEEeC--CeeeeeEEEEEEeeCCeeE
Q 022143 50 CPYQVNEKVLAFFQ--SHVYEAKVIQVQYRLKEWT 82 (302)
Q Consensus 50 ~~f~vge~vl~~~~--~~~y~AkIl~i~~~~~~~~ 82 (302)
..|.+||-|++.-+ ...|-|+|+++....++..
T Consensus 2 ~~~~lgD~V~v~~~~~~~~yi~rI~~i~e~~~g~~ 36 (122)
T cd04716 2 ITYNLGDDAYVQGGEGEEPFICKITEFFEGTDGKT 36 (122)
T ss_pred cEEEcCCEEEEECCCCCCCEEEEEEEEEEcCCCce
Confidence 35889999988754 3689999999998655443
No 45
>KOG3766 consensus Polycomb group protein SCM/L(3)MBT (tumor-supressor in Drosophila and humans) [Transcription]
Probab=42.88 E-value=19 Score=36.76 Aligned_cols=52 Identities=21% Similarity=0.339 Sum_probs=41.6
Q ss_pred CCCCCCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc
Q 022143 46 TPASCPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH 101 (302)
Q Consensus 46 ~~~~~~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ 101 (302)
..|+..|.+|-++.+... -...-|.|.++..... -||+.||...+|.||.-+
T Consensus 302 ~~p~~~~k~~~k~e~~d~~~p~~~~vatv~~~~~~~~----~~h~d~~~~~~~~~i~~d 356 (478)
T KOG3766|consen 302 RCPNHLFKVGMKLEAVDLRNPRLICVATVEKVCKTPL----IIHFDGWPSEYDFWIDID 356 (478)
T ss_pred CCCCccccccceeeeccccCCcccccccchhcccccc----ccCCCCCCcccceeeecC
Confidence 445558999999988873 3677788888776554 899999999999999875
No 46
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=42.21 E-value=45 Score=27.32 Aligned_cols=29 Identities=21% Similarity=0.069 Sum_probs=23.5
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCC
Q 022143 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLK 79 (302)
Q Consensus 51 ~f~vge~vl~~~~---~~~y~AkIl~i~~~~~ 79 (302)
.|.+||.|++.-. ...|-|+|.++....+
T Consensus 3 ~~~vGD~V~v~~~~~~~~pyIgrI~~i~e~~~ 34 (121)
T cd04714 3 IIRVGDCVLFKSPGRPSLPYVARIESLWEDPE 34 (121)
T ss_pred EEEcCCEEEEeCCCCCCCCEEEEEEEEEEcCC
Confidence 5899999998754 3589999999988543
No 47
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=41.69 E-value=51 Score=36.24 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=44.8
Q ss_pred CCCCCCCCcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCHH
Q 022143 44 PPTPASCPYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (302)
Q Consensus 44 ~~~~~~~~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~e 109 (302)
||..+......|+-|++.+ +|.||.|.|..|..- ...-|+|..+.. .|-+|..+|-...+.
T Consensus 688 ~~~~~~~~p~~gd~c~A~y~~D~qwyRa~i~~V~~~---~~~~V~yiDygn--~E~lp~~~l~~lp~~ 750 (875)
T KOG2039|consen 688 PPSSGSYTPKRGDLCVAKYSLDGQWYRALIVEVLDP---ESMEVFYIDYGN--IETLPFVRLKPLPPH 750 (875)
T ss_pred ccccCCCCCCCCCeeeeeeccccceeeeeeeeeccC---cceeEEEEecCc--ccccccccccCCChH
Confidence 3344444667999999999 789999999997653 367788887765 577787777665443
No 48
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=41.40 E-value=51 Score=19.12 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=19.5
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEE
Q 022143 52 YQVNEKVLAFFQS-HVYEAKVIQVQ 75 (302)
Q Consensus 52 f~vge~vl~~~~~-~~y~AkIl~i~ 75 (302)
|.+|+.|.+..|. .-..|.|+++.
T Consensus 2 ~~~G~~V~I~~G~~~g~~g~i~~i~ 26 (28)
T smart00739 2 FEVGDTVRVIAGPFKGKVGKVLEVD 26 (28)
T ss_pred CCCCCEEEEeECCCCCcEEEEEEEc
Confidence 7899999999976 45678888875
No 49
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=40.42 E-value=82 Score=24.73 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=23.9
Q ss_pred EEEEeC--CeeeeeEEEEEEeeC----CeeEEEEEEcCCC
Q 022143 58 VLAFFQ--SHVYEAKVIQVQYRL----KEWTFRVHYLGWN 91 (302)
Q Consensus 58 vl~~~~--~~~y~AkIl~i~~~~----~~~~Y~VHY~Gwn 91 (302)
|=|.+. |-|++|+|+.|-... ....|.|-|.++.
T Consensus 2 vD~~d~~~gAWfEa~i~~i~~~~~~~~e~viYhIkyddyp 41 (85)
T PF12148_consen 2 VDARDRNMGAWFEAQIVTITKKCMSDDEDVIYHIKYDDYP 41 (85)
T ss_dssp EEEE-TTT-EEEEEEEEEEEES-SSSSTTEEEEEEETT-G
T ss_pred cccccCCCcceEEEEEEEeeccCCCCCCCEEEEEEeccCC
Confidence 445553 689999999998743 3679999998875
No 50
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=39.92 E-value=81 Score=22.98 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=31.5
Q ss_pred CCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCC
Q 022143 53 QVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGW 90 (302)
Q Consensus 53 ~vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY~Gw 90 (302)
+++++|.+.- |+...++.|+.++.=+.+.-|+|.-..|
T Consensus 2 kvnD~VtVKTDG~~rR~G~ilavE~F~EG~MYLvaL~dY 40 (62)
T PF10781_consen 2 KVNDRVTVKTDGGPRREGVILAVEPFNEGTMYLVALEDY 40 (62)
T ss_pred ccccEEEEecCCcccccceEEEEeeccCcEEEEEEcCcC
Confidence 5889998875 6688999999999987788999986654
No 51
>PF13495 Phage_int_SAM_4: Phage integrase, N-terminal SAM-like domain; PDB: 2A3V_A.
Probab=39.60 E-value=48 Score=24.37 Aligned_cols=44 Identities=27% Similarity=0.515 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHhhhcCc
Q 022143 195 PRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPI 239 (302)
Q Consensus 195 Pa~~tV~~IL~dY~~~~~~~~~~~~~~~~e~~~Gl~~yFn~~L~~ 239 (302)
|...|.++| ++|+.+.....+.....++-.+.+|+.+|+.++..
T Consensus 38 ~~~it~~~i-~~y~~~l~~~~~~s~~T~~~~~~~l~~ff~~~~~~ 81 (85)
T PF13495_consen 38 PDEITPEDI-EQYLNYLQNERGLSPSTINQYLSALRSFFRWLLER 81 (85)
T ss_dssp GGG--HHHH-HHHHHHHHTTT---HHHHHHHHHHHHHHHHCTSS-
T ss_pred cchhHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 566777766 88999987443334556677888999999998764
No 52
>PRK10708 hypothetical protein; Provisional
Probab=37.57 E-value=94 Score=22.64 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=31.6
Q ss_pred CCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCC
Q 022143 53 QVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGW 90 (302)
Q Consensus 53 ~vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY~Gw 90 (302)
+++++|.+.- |+...++.|+.|+.=+.+.-|+|.-..|
T Consensus 2 kvnD~VtVKTDG~~rR~G~iLavE~F~EG~MyLvaL~dY 40 (62)
T PRK10708 2 KVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDY 40 (62)
T ss_pred ccccEEEEecCCCccccceEEEEeeccCcEEEEEEcCcC
Confidence 5889998874 6688999999999987788999986654
No 53
>smart00439 BAH Bromo adjacent homology domain.
Probab=37.43 E-value=85 Score=24.56 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=23.7
Q ss_pred cCCCCEEEEEeCC---eeeeeEEEEEEeeCCe
Q 022143 52 YQVNEKVLAFFQS---HVYEAKVIQVQYRLKE 80 (302)
Q Consensus 52 f~vge~vl~~~~~---~~y~AkIl~i~~~~~~ 80 (302)
|.+|+.|++...+ ..|-|+|.++....++
T Consensus 2 ~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~~ 33 (120)
T smart00439 2 IRVGDFVLVEPDDADEPYYIGRIEEIFETKKN 33 (120)
T ss_pred cccCCEEEEeCCCCCCCCEEEEEEEEEECCCC
Confidence 7899999998653 5899999999886543
No 54
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=36.27 E-value=80 Score=27.43 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=24.1
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeC
Q 022143 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRL 78 (302)
Q Consensus 51 ~f~vge~vl~~~~-~~~y~AkIl~i~~~~ 78 (302)
.|.+||.|++..+ ...|-|+|.++....
T Consensus 29 ~y~lGD~Vlv~s~~~~~yIgkI~~iwe~~ 57 (159)
T cd04715 29 EYRLYDDVYVHNGDSEPYIGKIIKIYETA 57 (159)
T ss_pred EEeCCCEEEEeCCCCCCEEEEEEEEEEcC
Confidence 5899999999864 478999999998864
No 55
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=33.08 E-value=71 Score=24.92 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=23.4
Q ss_pred CCcCCCCEEEEEeC-----CeeeeeEEEEEEeeCC
Q 022143 50 CPYQVNEKVLAFFQ-----SHVYEAKVIQVQYRLK 79 (302)
Q Consensus 50 ~~f~vge~vl~~~~-----~~~y~AkIl~i~~~~~ 79 (302)
..|.+|+.|++.-. ...|-|+|.++.....
T Consensus 2 ~~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~~ 36 (123)
T cd04370 2 ITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTN 36 (123)
T ss_pred CEEecCCEEEEecCCcCCCCCCEEEEEeeeeECCC
Confidence 35889999988754 3489999999987643
No 56
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=32.93 E-value=33 Score=22.34 Aligned_cols=21 Identities=24% Similarity=0.631 Sum_probs=14.8
Q ss_pred CCCCcCCCCEEEEEeCCeeeeeE
Q 022143 48 ASCPYQVNEKVLAFFQSHVYEAK 70 (302)
Q Consensus 48 ~~~~f~vge~vl~~~~~~~y~Ak 70 (302)
++..|..|++|. |.|..|+|+
T Consensus 6 ~~~~Y~~Gd~V~--~~g~~y~a~ 26 (41)
T PF02839_consen 6 PGTTYNAGDRVS--YNGKLYQAK 26 (41)
T ss_dssp TTCEE-TT-EEE--ETTEEEEES
T ss_pred CCCEEcCCCEEE--ECCCEEEEe
Confidence 445689999765 889999985
No 57
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=32.84 E-value=1.1e+02 Score=24.82 Aligned_cols=29 Identities=14% Similarity=0.037 Sum_probs=23.9
Q ss_pred CCcCCCCEEEEEeC---CeeeeeEEEEEEeeC
Q 022143 50 CPYQVNEKVLAFFQ---SHVYEAKVIQVQYRL 78 (302)
Q Consensus 50 ~~f~vge~vl~~~~---~~~y~AkIl~i~~~~ 78 (302)
..|.+||-|++... +..|-|+|.++....
T Consensus 2 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~ 33 (121)
T cd04717 2 LQYRVGDCVYVANPEDPSKPIIFRIERLWKDE 33 (121)
T ss_pred CEEECCCEEEEeCCCCCCCCEEEEEeEEEECC
Confidence 35899999998753 568999999998865
No 58
>PF04319 NifZ: NifZ domain; InterPro: IPR007415 NifZ is a short protein is found in the nif (nitrogen fixation) operon. It is required for the maturation of the nitrogenase MoFe protein. In the absence of NifZ, only one of the two P-clusters of the MoFe protein is matured to the ultimate [8Fe-7S] structure. The other P-cluster site in the protein contains a [4Fe-4S] cluster pair, suggesting that NifZ is specifically required for the formation of the second P-cluster [, , ].; GO: 0009399 nitrogen fixation
Probab=32.52 E-value=67 Score=24.61 Aligned_cols=12 Identities=25% Similarity=0.188 Sum_probs=9.7
Q ss_pred CcCCCCEEEEEe
Q 022143 51 PYQVNEKVLAFF 62 (302)
Q Consensus 51 ~f~vge~vl~~~ 62 (302)
.|+.|++|.+..
T Consensus 4 ~f~~G~~V~a~~ 15 (75)
T PF04319_consen 4 RFEWGDKVRARK 15 (75)
T ss_pred ccCCCCEEEEEE
Confidence 589999998854
No 59
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=32.14 E-value=33 Score=27.56 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=17.1
Q ss_pred ceeeCCCCCCHHHHHHHHHHhh
Q 022143 190 KLVKLPRTPNVDDILEKYCDYR 211 (302)
Q Consensus 190 ~L~~LPa~~tV~~IL~dY~~~~ 211 (302)
.|..-|..|||++||+|--...
T Consensus 6 vLPtRP~PPTvEqILEDv~~A~ 27 (97)
T PF15136_consen 6 VLPTRPEPPTVEQILEDVRGAP 27 (97)
T ss_pred CCCCCCCCCCHHHHHHHHhcCC
Confidence 3555688899999999977654
No 60
>PF07154 DUF1392: Protein of unknown function (DUF1392); InterPro: IPR009824 This family consists of several hypothetical cyanobacterial proteins of around 150 residues in length, which seem to be specific to Anabaena species. The function of this family is unknown.
Probab=30.15 E-value=1.2e+02 Score=26.11 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=28.3
Q ss_pred CCcCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEE
Q 022143 50 CPYQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRV 85 (302)
Q Consensus 50 ~~f~vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~V 85 (302)
..|..||+|.... ++..-.--|+.|..-++.|.|.|
T Consensus 86 p~F~LGd~V~~~f~~~~pkqRlIlGv~lv~~~W~Y~V 122 (150)
T PF07154_consen 86 PAFRLGDRVEFRFYSDGPKQRLILGVFLVNNSWFYAV 122 (150)
T ss_pred CceecCCEEEEEecCCCCceEEEEEEEEecCceEEEE
Confidence 3699999997755 54444556888988899999998
No 61
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=28.93 E-value=3.5e+02 Score=22.67 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=29.6
Q ss_pred ceeeCCCCCCHHHHHHHHHHhhhccC-CcchhhHHHHHHHHHHHHhhhcCcccCChhhHhhH
Q 022143 190 KLVKLPRTPNVDDILEKYCDYRSKKD-GLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQY 250 (302)
Q Consensus 190 ~L~~LPa~~tV~~IL~dY~~~~~~~~-~~~~~~~~e~~~Gl~~yFn~~L~~~LLY~~Er~Qy 250 (302)
-++++|......+-+.+.+......+ .........++..|+.||.. |+.-|+-..--..+
T Consensus 23 giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~-Lp~pli~~~~~~~~ 83 (174)
T smart00324 23 GIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRE-LPEPLIPYELYEEF 83 (174)
T ss_pred ceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHh-CCCccCCHHHHHHH
Confidence 37888876554444444444332211 11222345667777777775 44445444333333
No 62
>TIGR00922 nusG transcription termination/antitermination factor NusG. Archaeal proteins once termed NusG share the KOW domain but are actually a ribosomal protein corresponding to L24p in bacterial and L26e in eukaryotes (TIGR00405).
Probab=28.22 E-value=1.6e+02 Score=25.04 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=29.7
Q ss_pred CCcCCCCEEEEEeCC-eeeeeEEEEEEeeCCeeEEEEEEcC
Q 022143 50 CPYQVNEKVLAFFQS-HVYEAKVIQVQYRLKEWTFRVHYLG 89 (302)
Q Consensus 50 ~~f~vge~vl~~~~~-~~y~AkIl~i~~~~~~~~Y~VHY~G 89 (302)
..|.+|++|.+..|+ .-++|.|.+++.+++...-.|...|
T Consensus 118 ~~~~~G~~V~I~~Gpf~G~~g~v~~~~~~~~r~~V~v~~~g 158 (172)
T TIGR00922 118 IDFEVGEQVRVNDGPFANFTGTVEEVDYEKSKLKVSVSIFG 158 (172)
T ss_pred cCCCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEECC
Confidence 459999999999998 4689999998765554444444444
No 63
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=28.02 E-value=4.1e+02 Score=23.24 Aligned_cols=105 Identities=20% Similarity=0.226 Sum_probs=45.7
Q ss_pred eCChhHHHHHHHHH-HHHhhcCceeeCCCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHhhhcCcccCChhhH
Q 022143 169 QIPPPLKKQLVDDC-EFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSER 247 (302)
Q Consensus 169 ~lP~~Lk~iLvdD~-~~I~~~~~L~~LPa~~tV~~IL~dY~~~~~~~~~~~~~~~~e~~~Gl~~yFn~~L~~~LLY~~Er 247 (302)
.+|..+..++..=. .-+..+| |+++|...+..+-|.+-++.-....-.....+..++..|+.||.. |+.-|+-.
T Consensus 21 ~iP~~i~~~i~~l~~~gl~~eG-IFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLRe-LPePLi~~--- 95 (199)
T cd04390 21 LVPILVEQCVDFIREHGLKEEG-LFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASLLKLYLRE-LPEPVIPW--- 95 (199)
T ss_pred CCChHHHHHHHHHHHcCCCCCC-eeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHHHHHHHHh-CCCccCCH---
Confidence 47866655542111 1133334 888987644333333322221111100112344566667777775 55555533
Q ss_pred hhHHHhhhc--CCCCCcccChHHHHHHhhhhhh
Q 022143 248 EQYEDSMAA--DVSPSSVYGAEHLLRLFVKLPE 278 (302)
Q Consensus 248 ~Qy~~~~~~--~~~pS~~YG~~HLLRL~vkLP~ 278 (302)
..|..++.- .....+.-++.-|.+++.+||.
T Consensus 96 ~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~ 128 (199)
T cd04390 96 AQYEDFLSCAQLLSKDEEKGLGELMKQVSILPK 128 (199)
T ss_pred HHHHHHHHHHhccCccHHHHHHHHHHHHHHCCH
Confidence 234443311 1112223334445555555554
No 64
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=27.90 E-value=1.5e+02 Score=23.17 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=24.4
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCe
Q 022143 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKE 80 (302)
Q Consensus 51 ~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~ 80 (302)
.|.+||.|++..+ ...|-|+|.++....++
T Consensus 2 ~~~vGD~V~v~~~~~~~~~~v~~I~~i~~~~~~ 34 (119)
T PF01426_consen 2 TYKVGDFVYVKPDDPPEPPYVARIEEIWEDKDG 34 (119)
T ss_dssp EEETTSEEEEECTSTTSEEEEEEEEEEEEETTT
T ss_pred EEeCCCEEEEeCCCCCCCCEEEEEEEEEcCCCC
Confidence 4789999999864 47899999999886544
No 65
>PF11390 FdsD: NADH-dependant formate dehydrogenase delta subunit FdsD; InterPro: IPR021074 FdsD is the delta subunit of the enzyme formate dehydrogenase. This subunit may play a role in maintaining the quaternary structure by means of electrostatic interactions with the other subunits []. The delta subunit is not involved in the active centre of the enzyme [].
Probab=27.51 E-value=78 Score=23.20 Aligned_cols=33 Identities=12% Similarity=0.256 Sum_probs=25.0
Q ss_pred HHHHHhhhhhhhhhcCCCCHHHHHHHHHHHhhh
Q 022143 268 HLLRLFVKLPELLVHAKIEEETLTLLQHKLVDL 300 (302)
Q Consensus 268 HLLRL~vkLP~ll~~~~~d~~s~~~l~~~l~~f 300 (302)
||+||--.+-.++...+=.++.+.-+..||+.|
T Consensus 1 ~LI~MANQIa~ff~~~p~~~~a~~~va~Hi~kF 33 (61)
T PF11390_consen 1 KLIKMANQIAAFFESYPPEEEAVEGVANHIKKF 33 (61)
T ss_pred CHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 688888888888887766666777777777766
No 66
>TIGR01956 NusG_myco NusG family protein. This model represents a family of Mycoplasma proteins orthologous to the bacterial transcription termination/antitermination factor NusG. These sequences from Mycoplasma are notably diverged (long branches in a Neighbor-joining phylogenetic tree) from the bacterial species. And although NusA and ribosomal protein S10 (NusE) appear to be present, NusB may be absent in Mycoplasmas calling into question whether these species have a functional Nus system including this family as a member.
Probab=27.18 E-value=2.7e+02 Score=26.23 Aligned_cols=41 Identities=15% Similarity=0.014 Sum_probs=29.8
Q ss_pred CCcCCCCEEEEEeCC-eeeeeEEEEEEeeCCeeEEEEEEcCCCC
Q 022143 50 CPYQVNEKVLAFFQS-HVYEAKVIQVQYRLKEWTFRVHYLGWNK 92 (302)
Q Consensus 50 ~~f~vge~vl~~~~~-~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~ 92 (302)
..|.+|+.|.+..|+ .-++|.|.++..+++ +..|...-+++
T Consensus 204 ~~f~vGd~VrI~dGPF~GfeG~I~eid~~k~--Rv~VlV~IfGR 245 (258)
T TIGR01956 204 SKFRVGNFVKIVDGPFKGIVGKIKKIDQEKK--KAIVEVEILGK 245 (258)
T ss_pred cCCCCCCEEEEEecCCCCcEEEEEEEeCCCC--EEEEEEEecCC
Confidence 459999999999998 569999999986544 34444433443
No 67
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=26.72 E-value=1.1e+02 Score=25.53 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=25.0
Q ss_pred CCcCCCCEEEEEe-CCeeeeeEEEEEEeeCCe
Q 022143 50 CPYQVNEKVLAFF-QSHVYEAKVIQVQYRLKE 80 (302)
Q Consensus 50 ~~f~vge~vl~~~-~~~~y~AkIl~i~~~~~~ 80 (302)
..|++|+.|++.- ++..|-|.|.++..+..+
T Consensus 6 ~~i~vGD~V~v~~~~~~~~va~Ie~i~ed~~g 37 (130)
T cd04721 6 VTISVHDFVYVLSEEEDRYVAYIEDLYEDKKG 37 (130)
T ss_pred EEEECCCEEEEeCCCCCcEEEEEEEEEEcCCC
Confidence 3589999999975 357899999999987543
No 68
>PRK05609 nusG transcription antitermination protein NusG; Validated
Probab=25.99 E-value=2.1e+02 Score=24.52 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=30.0
Q ss_pred CCcCCCCEEEEEeCC-eeeeeEEEEEEeeCCeeEEEEEEcCCCC
Q 022143 50 CPYQVNEKVLAFFQS-HVYEAKVIQVQYRLKEWTFRVHYLGWNK 92 (302)
Q Consensus 50 ~~f~vge~vl~~~~~-~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~ 92 (302)
..|.+|++|.+..|+ .-++|.|.+++.+++ ...|...-.++
T Consensus 125 ~~~~~Gd~VrI~~GPf~G~~g~v~~i~~~~~--r~~v~l~~~G~ 166 (181)
T PRK05609 125 VDFEVGEMVRVIDGPFADFNGTVEEVDYEKS--KLKVLVSIFGR 166 (181)
T ss_pred cCCCCCCEEEEeccCCCCCEEEEEEEeCCCC--EEEEEEEECCC
Confidence 469999999999998 469999999875444 44555444444
No 69
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=25.15 E-value=1.1e+02 Score=26.87 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=32.1
Q ss_pred CCcCCCCEEEEEeC--CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceee
Q 022143 50 CPYQVNEKVLAFFQ--SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWV 98 (302)
Q Consensus 50 ~~f~vge~vl~~~~--~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV 98 (302)
..|.+|+.|++..+ +..|-|.|.+|..........|+-. |=.||+|-.
T Consensus 51 ~~~~vGD~Vlik~~~~~~~~V~iI~ei~~~~~~~~v~i~v~-Wy~r~~Ei~ 100 (179)
T cd04720 51 LELSVGDTILVKDDVANSPSVYLIHEIRLNTLNNEVELWVM-WFLRWFEIN 100 (179)
T ss_pred eEEeCCCEEEEeCCCCCCCEEEEEEEEEeCCCCCEEEEEEE-EcCCHHHcc
Confidence 35999999999864 5688999999987653122234433 555566553
No 70
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.50 E-value=1.3e+02 Score=28.98 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=31.3
Q ss_pred CEEEEEe------CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeee
Q 022143 56 EKVLAFF------QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVG 99 (302)
Q Consensus 56 e~vl~~~------~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~ 99 (302)
..|-||+ +|..=.|.++--+..++..-=.|||.|++-|.++|-+
T Consensus 52 ~~ve~ydvTf~g~~g~rI~gwlvlP~~~~~~~P~vV~fhGY~g~~g~~~~ 101 (321)
T COG3458 52 PRVEVYDVTFTGYGGARIKGWLVLPRHEKGKLPAVVQFHGYGGRGGEWHD 101 (321)
T ss_pred CceEEEEEEEeccCCceEEEEEEeecccCCccceEEEEeeccCCCCCccc
Confidence 3477765 3444446666666666667789999999999888843
No 71
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=24.49 E-value=5.2e+02 Score=23.24 Aligned_cols=35 Identities=9% Similarity=0.074 Sum_probs=20.0
Q ss_pred CCCcccChHHHHHHhhhhhhhhhcCCCCHHHHHHH
Q 022143 259 SPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLL 293 (302)
Q Consensus 259 ~pS~~YG~~HLLRL~vkLP~ll~~~~~d~~s~~~l 293 (302)
++....=+.+|+++|.+.-.--....|+...+..+
T Consensus 123 P~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAiv 157 (220)
T cd04375 123 PDENREVLQTLLYFLSDVAANSQENQMTATNLAVC 157 (220)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHH
Confidence 34444445566666666655445566777766654
No 72
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=23.94 E-value=4.8e+02 Score=22.62 Aligned_cols=124 Identities=15% Similarity=0.132 Sum_probs=59.0
Q ss_pred eCChhHHHHHHHHH-HHHhhcCceeeCCCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHhhhcCcccCChhhH
Q 022143 169 QIPPPLKKQLVDDC-EFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSER 247 (302)
Q Consensus 169 ~lP~~Lk~iLvdD~-~~I~~~~~L~~LPa~~tV~~IL~dY~~~~~~~~~~~~~~~~e~~~Gl~~yFn~~L~~~LLY~~Er 247 (302)
.+|..|..++.-=. .-++.+| |++.|...+--+.+.+.++.......-....+..++.-|+.||... +.-|+-..--
T Consensus 14 ~vP~~l~~~~~~l~~~g~~~eG-iFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~flr~L-pepLi~~~~~ 91 (186)
T cd04377 14 SVPLVLEKLLEHIEMHGLYTEG-IYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQWLREL-PEPLMTFELY 91 (186)
T ss_pred CCChHHHHHHHHHHHcCCCCCc-eeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHHHHcC-CCccCCHHHH
Confidence 57877755533211 1233334 8888876554444444444321110111123445666677777765 4444432222
Q ss_pred hhHHHhhh---------------cCCCCCcccChHHHHHHhhhhhhhhhcCCCCHHHHHHHH
Q 022143 248 EQYEDSMA---------------ADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQ 294 (302)
Q Consensus 248 ~Qy~~~~~---------------~~~~pS~~YG~~HLLRL~vkLP~ll~~~~~d~~s~~~l~ 294 (302)
.++.+... ...++...+=+.+|+++|.++-.--....|+.+.+..+.
T Consensus 92 ~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf 153 (186)
T cd04377 92 ENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVF 153 (186)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 22222111 112333333344577777666554445677777766544
No 73
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=22.62 E-value=1.3e+02 Score=23.26 Aligned_cols=50 Identities=8% Similarity=0.102 Sum_probs=28.1
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEeeCC-eeEEEEEEcCCCCCcceeeecccc
Q 022143 51 PYQVNEKVLAFFQSHVYEAKVIQVQYRLK-EWTFRVHYLGWNKSWDEWVGVHRL 103 (302)
Q Consensus 51 ~f~vge~vl~~~~~~~y~AkIl~i~~~~~-~~~Y~VHY~Gwn~r~DeWV~~~ri 103 (302)
.|++||.|+.-..|.-.-..|..+...+. ...|.++|.+=+ =--||.+++
T Consensus 1 mf~~GD~VVh~~~Gv~~i~~i~~~~~~~~~~~yy~L~~~~~~---~i~vPv~~~ 51 (98)
T PF02559_consen 1 MFKIGDYVVHPNHGVGRIEGIEEIEFGGEKQEYYVLEYADDD---TIYVPVDNA 51 (98)
T ss_dssp T--TTSEEEETTTEEEEEEEEEEEECTTEEEEEEEEEECCCE---EEEEECCCG
T ss_pred CCCCCCEEEECCCceEEEEEEEEEeeCCeeEEEEEEEECCCC---EEEEEcCCh
Confidence 38999988877667644344444444322 346667777644 356676653
No 74
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=22.01 E-value=1.7e+02 Score=24.54 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=24.2
Q ss_pred CCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEc-CCC
Q 022143 54 VNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYL-GWN 91 (302)
Q Consensus 54 vge~vl~~~~~--~~y~AkIl~i~~~~~~~~Y~VHY~-Gwn 91 (302)
+|=+|++.|.. -.|..+|..- .+..+|.|-|. |-.
T Consensus 5 iG~rV~AkWS~n~yyY~G~I~~~---~~~~kykv~FdDG~~ 42 (122)
T PF09038_consen 5 IGLRVFAKWSDNGYYYPGKITSD---KGKNKYKVLFDDGYE 42 (122)
T ss_dssp TT-EEEEESSTTSEEEEEEEEEE---ETTTEEEEEETTS-E
T ss_pred cccEEEEEEccCCcccCceEeec---CCCCeEEEEecCCcc
Confidence 79999999964 4578998872 34458888875 443
No 75
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=21.81 E-value=4.1e+02 Score=23.18 Aligned_cols=72 Identities=15% Similarity=0.120 Sum_probs=36.7
Q ss_pred eCChhHHHHHHHH-HHHHhhcCceeeCCCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHhhhcCcccCC
Q 022143 169 QIPPPLKKQLVDD-CEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLY 243 (302)
Q Consensus 169 ~lP~~Lk~iLvdD-~~~I~~~~~L~~LPa~~tV~~IL~dY~~~~~~~~~~~~~~~~e~~~Gl~~yFn~~L~~~LLY 243 (302)
.+|..+..++..= ......+| ++++|...+.-+-+...++.....+ .....+..++..|+.||...-. -|+-
T Consensus 14 ~vP~~i~~~i~~l~~~g~~~eG-iFR~~g~~~~i~~l~~~~~~~~~~~-~~~~~~~~va~~lK~flreLpe-pLi~ 86 (192)
T cd04402 14 NLPKPILDMLSLLYQKGPSTEG-IFRRSANAKACKELKEKLNSGVEVD-LKAEPVLLLASVLKDFLRNIPG-SLLS 86 (192)
T ss_pred CCCHHHHHHHHHHHHhCCCCCC-eeeCCCcHHHHHHHHHHHhCCCCCC-CccCCHHHHHHHHHHHHHhCCC-ccCC
Confidence 5787776654431 11233344 8899987774444444443322111 1122344566667777776543 4443
No 76
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=21.45 E-value=1.4e+02 Score=24.88 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=25.6
Q ss_pred CcCCCCEEEEEeCC------eeeeeEEEEEEeeCCeeEEEEEEcCC
Q 022143 51 PYQVNEKVLAFFQS------HVYEAKVIQVQYRLKEWTFRVHYLGW 90 (302)
Q Consensus 51 ~f~vge~vl~~~~~------~~y~AkIl~i~~~~~~~~Y~VHY~Gw 90 (302)
.|++||.||.++.. .+|.|=-. +..+||+|=..-
T Consensus 42 ~f~~GDlvLflpt~~~~~~~~~~~af~~------~~~~YFL~~~s~ 81 (129)
T PF10377_consen 42 NFQVGDLVLFLPTRNHNNKKQPWAAFNV------GCPHYFLHEDSI 81 (129)
T ss_pred cCCCCCEEEEEecCCCCccccceEEeeC------CCceEEEecccc
Confidence 59999999999852 23666432 678999998877
No 77
>KOG1904 consensus Transcription coactivator [Transcription]
Probab=21.39 E-value=64 Score=33.16 Aligned_cols=58 Identities=10% Similarity=0.172 Sum_probs=44.9
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEee---CCeeEEEEEEcCCCCCcceeeecccccccCHHh
Q 022143 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYR---LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEAN 110 (302)
Q Consensus 51 ~f~vge~vl~~~~~-~~y~AkIl~i~~~---~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~en 110 (302)
.|.+|+.|++-=.| -.|.|+|...... .+..+|.|-|.|=... -||...+|+.|....
T Consensus 12 ~~~~GDLV~AKlkgyp~WParI~~~~~~~~kp~pkky~V~FfGT~e~--Afl~p~dlqpy~~~k 73 (496)
T KOG1904|consen 12 NFKCGDLVFAKLKGYPPWPARIRNGPDGAVKPPPKKYTVFFFGTKET--AFLKPKDLQPYMLNK 73 (496)
T ss_pred CCCCCceeeecccCCCCCcccccCcccccccCCCceeEEEEeccCcc--cccchhhccchhhhh
Confidence 59999999997766 6899999988765 4457999999885443 578888888775544
No 78
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=21.09 E-value=2e+02 Score=23.22 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=27.3
Q ss_pred CCCCcCCCCEEEEEeCCeeeeeEEEEEEeeCC
Q 022143 48 ASCPYQVNEKVLAFFQSHVYEAKVIQVQYRLK 79 (302)
Q Consensus 48 ~~~~f~vge~vl~~~~~~~y~AkIl~i~~~~~ 79 (302)
|+...++||.+....+...+..+|+.+....+
T Consensus 45 pS~~VK~GD~l~i~~~~~~~~v~Vl~~~~~r~ 76 (100)
T COG1188 45 PSKEVKVGDILTIRFGNKEFTVKVLALGEQRR 76 (100)
T ss_pred cccccCCCCEEEEEeCCcEEEEEEEecccccC
Confidence 55579999999999999999999999977543
No 79
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=20.73 E-value=6.3e+02 Score=22.75 Aligned_cols=73 Identities=16% Similarity=0.128 Sum_probs=35.3
Q ss_pred eCChhHHHHHHHHHHH-HhhcCceeeCCCCCC-HHHHHHHHHHhhhc--cCCcchhhHHHHHHHHHHHHhhhcCcccCC
Q 022143 169 QIPPPLKKQLVDDCEF-ITHLGKLVKLPRTPN-VDDILEKYCDYRSK--KDGLVADSTGEIVKGLRCYFDKALPIMLLY 243 (302)
Q Consensus 169 ~lP~~Lk~iLvdD~~~-I~~~~~L~~LPa~~t-V~~IL~dY~~~~~~--~~~~~~~~~~e~~~Gl~~yFn~~L~~~LLY 243 (302)
.||..+.++..-=... +..+| |+++|...+ |+++.+.|-..... ........+..++..|+.||.. |+..|+-
T Consensus 31 ~IP~iv~~ci~~l~~~gl~~EG-IFRvsG~~~~i~~L~~~~d~~~~~~~~~~~~~~~vh~va~lLK~fLRe-LPePLip 107 (225)
T cd04396 31 YIPVVVAKCGVYLKENATEVEG-IFRVAGSSKRIRELQLIFSTPPDYGKSFDWDGYTVHDAASVLRRYLNN-LPEPLVP 107 (225)
T ss_pred CCChHHHHHHHHHHHCCCCCCC-ceeCCCCHHHHHHHHHHHccCcccCCcCCccCCCHHHHHHHHHHHHHh-CCCccCC
Confidence 6787776663322111 23334 788887654 33333333321110 0011111234567778888877 5555544
No 80
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=20.51 E-value=2.1e+02 Score=28.91 Aligned_cols=78 Identities=17% Similarity=0.095 Sum_probs=49.5
Q ss_pred eCChhHHHHHHHHHHHHhhcCceeeCCCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHhhhcCcccCChhhHh
Q 022143 169 QIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSERE 248 (302)
Q Consensus 169 ~lP~~Lk~iLvdD~~~I~~~~~L~~LPa~~tV~~IL~dY~~~~~~~~~~~~~~~~e~~~Gl~~yFn~~L~~~LLY~~Er~ 248 (302)
.+++.|+..|...+-.+.+.+....+--..==..|-+.+- .-.......+.|+++|+|..|+..+...==|..|+.
T Consensus 70 ~~~edLr~fLe~nlpK~kkkk~sLgi~d~kLg~~i~E~~~----~i~c~~~~~~~ellRGvR~hf~kl~K~L~~~d~~ka 145 (498)
T KOG2573|consen 70 VVHEDLRSFLELNLPKVKKKKVSLGIGDSKLGISIKEAFP----KIPCQSNEVVQELLRGVRKHFDKLMKGLDPGDLEKA 145 (498)
T ss_pred cccHHHHHHHHhhChhhhcCceeeccCcchhhhHHHhhcc----CcccccchhHHHHHHHHHHHHHHHHccCCCccHHHH
Confidence 5788999999888776644333332222111122333321 111233456789999999999999988778889998
Q ss_pred hH
Q 022143 249 QY 250 (302)
Q Consensus 249 Qy 250 (302)
|-
T Consensus 146 qL 147 (498)
T KOG2573|consen 146 QL 147 (498)
T ss_pred Hh
Confidence 83
Done!